Query 041325
Match_columns 450
No_of_seqs 711 out of 3821
Neff 11.7
Searched_HMMs 46136
Date Fri Mar 29 06:00:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041325.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041325hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 1.9E-52 4.1E-57 341.4 26.1 316 14-448 118-479 (480)
2 KOG0271 Notchless-like WD40 re 100.0 9.8E-51 2.1E-55 331.4 27.6 288 63-450 105-439 (480)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.2E-49 2.7E-54 329.0 20.2 277 73-448 173-458 (459)
4 KOG0286 G-protein beta subunit 100.0 4.4E-44 9.6E-49 282.6 30.4 292 64-448 46-343 (343)
5 KOG0279 G protein beta subunit 100.0 6.9E-43 1.5E-47 274.1 32.0 300 64-450 6-313 (315)
6 KOG0315 G-protein beta subunit 100.0 1.2E-41 2.6E-46 262.8 27.7 276 85-450 10-288 (311)
7 KOG0285 Pleiotropic regulator 100.0 1.8E-42 3.9E-47 280.8 23.8 294 56-448 134-437 (460)
8 KOG0272 U4/U6 small nuclear ri 100.0 6.3E-43 1.4E-47 289.3 19.1 253 53-385 197-458 (459)
9 KOG0645 WD40 repeat protein [G 100.0 1.4E-40 2.9E-45 260.1 29.2 297 64-450 5-311 (312)
10 KOG0295 WD40 repeat-containing 100.0 3.1E-41 6.7E-46 274.2 25.5 309 42-450 77-406 (406)
11 KOG0281 Beta-TrCP (transducin 100.0 1.1E-42 2.3E-47 281.3 16.0 286 65-449 186-476 (499)
12 KOG0284 Polyadenylation factor 100.0 9.2E-42 2E-46 281.2 19.7 277 74-448 95-378 (464)
13 KOG0319 WD40-repeat-containing 100.0 1.2E-39 2.6E-44 288.0 27.9 349 53-450 84-577 (775)
14 KOG0318 WD40 repeat stress pro 100.0 2.9E-38 6.3E-43 268.8 35.2 351 51-450 168-560 (603)
15 KOG0273 Beta-transducin family 100.0 9.1E-40 2E-44 274.3 25.4 289 73-450 176-482 (524)
16 KOG0263 Transcription initiati 100.0 1.9E-39 4.2E-44 289.4 26.0 291 62-420 367-698 (707)
17 KOG0315 G-protein beta subunit 100.0 4.4E-38 9.6E-43 243.1 28.2 281 55-415 22-308 (311)
18 KOG0265 U5 snRNP-specific prot 100.0 1.6E-38 3.4E-43 252.2 23.9 283 72-449 44-337 (338)
19 KOG0291 WD40-repeat-containing 100.0 7.4E-37 1.6E-41 271.0 36.8 370 12-450 97-550 (893)
20 KOG0293 WD40 repeat-containing 100.0 2E-38 4.3E-43 262.0 23.4 307 42-449 197-512 (519)
21 KOG0279 G protein beta subunit 100.0 1.6E-37 3.4E-42 244.1 25.5 257 59-387 49-313 (315)
22 KOG0316 Conserved WD40 repeat- 100.0 2.8E-37 6.2E-42 236.7 26.0 265 64-420 8-283 (307)
23 KOG0263 Transcription initiati 100.0 3E-38 6.4E-43 281.8 23.6 269 126-450 377-649 (707)
24 KOG0291 WD40-repeat-containing 100.0 9.4E-37 2E-41 270.3 31.2 302 57-450 291-612 (893)
25 cd00200 WD40 WD40 domain, foun 100.0 2.8E-36 6E-41 264.9 34.3 282 66-448 2-289 (289)
26 KOG0313 Microtubule binding pr 100.0 1.4E-37 3E-42 254.4 23.4 287 64-448 97-416 (423)
27 KOG0319 WD40-repeat-containing 100.0 3.7E-38 7.9E-43 278.6 21.2 298 54-448 304-617 (775)
28 KOG0281 Beta-TrCP (transducin 100.0 1.4E-38 3E-43 257.5 16.4 265 51-389 215-479 (499)
29 KOG0273 Beta-transducin family 100.0 2.5E-36 5.5E-41 253.7 29.4 274 75-450 235-523 (524)
30 KOG0282 mRNA splicing factor [ 100.0 3.6E-38 7.9E-43 265.7 18.1 292 59-448 200-503 (503)
31 KOG0296 Angio-associated migra 100.0 4.8E-36 1E-40 244.2 29.6 330 64-449 55-397 (399)
32 KOG0266 WD40 repeat-containing 100.0 1.1E-35 2.3E-40 272.7 34.7 291 61-449 146-453 (456)
33 KOG0286 G-protein beta subunit 100.0 2E-36 4.4E-41 239.3 24.3 280 12-385 56-343 (343)
34 PLN00181 protein SPA1-RELATED; 100.0 4.9E-35 1.1E-39 288.4 37.3 299 73-449 481-792 (793)
35 KOG0295 WD40 repeat-containing 100.0 7.6E-37 1.6E-41 248.8 17.3 257 51-386 128-405 (406)
36 KOG0276 Vesicle coat complex C 100.0 8.1E-36 1.8E-40 259.1 24.4 280 67-446 7-295 (794)
37 KOG0284 Polyadenylation factor 100.0 5.2E-37 1.1E-41 253.3 15.4 239 73-388 136-381 (464)
38 KOG0285 Pleiotropic regulator 100.0 2.8E-36 6.1E-41 245.0 18.4 242 120-450 144-389 (460)
39 KOG0292 Vesicle coat complex C 100.0 3.4E-35 7.5E-40 264.8 24.9 287 73-449 7-320 (1202)
40 KOG0278 Serine/threonine kinas 100.0 3.8E-36 8.3E-41 232.6 15.7 278 69-449 8-296 (334)
41 KOG0306 WD40-repeat-containing 100.0 8.2E-35 1.8E-39 258.0 26.2 326 11-449 320-663 (888)
42 KOG0274 Cdc4 and related F-box 100.0 1.9E-34 4.1E-39 263.0 28.1 273 73-450 206-482 (537)
43 KOG0306 WD40-repeat-containing 100.0 1.4E-33 3E-38 250.2 31.7 344 55-449 89-579 (888)
44 KOG0318 WD40 repeat stress pro 100.0 8.6E-33 1.9E-37 235.7 33.9 348 53-450 212-602 (603)
45 KOG0277 Peroxisomal targeting 100.0 2.2E-34 4.9E-39 223.4 20.5 263 94-448 37-307 (311)
46 KOG1407 WD40 repeat protein [F 100.0 1.4E-33 2.9E-38 219.9 24.5 277 73-449 18-310 (313)
47 KOG0292 Vesicle coat complex C 100.0 8.8E-34 1.9E-38 255.8 27.0 256 3-342 1-288 (1202)
48 KOG0276 Vesicle coat complex C 100.0 1.1E-33 2.5E-38 245.8 26.7 257 48-382 30-294 (794)
49 KOG0643 Translation initiation 100.0 2.8E-33 6.1E-38 218.8 24.6 287 71-449 6-316 (327)
50 KOG0265 U5 snRNP-specific prot 100.0 9.9E-34 2.2E-38 225.0 22.2 247 121-449 41-295 (338)
51 KOG0316 Conserved WD40 repeat- 100.0 1.6E-32 3.5E-37 210.7 22.6 241 120-449 10-256 (307)
52 KOG0301 Phospholipase A2-activ 100.0 3.6E-32 7.8E-37 239.3 27.3 278 62-449 3-287 (745)
53 KOG0282 mRNA splicing factor [ 100.0 2.3E-33 4.9E-38 236.9 18.1 255 116-450 203-462 (503)
54 KOG0313 Microtubule binding pr 100.0 8.7E-33 1.9E-37 226.4 20.6 280 59-387 130-418 (423)
55 KOG0640 mRNA cleavage stimulat 100.0 4.3E-32 9.3E-37 216.8 23.9 299 72-448 109-424 (430)
56 KOG0268 Sof1-like rRNA process 100.0 1E-33 2.2E-38 230.5 14.7 282 65-449 58-344 (433)
57 KOG0283 WD40 repeat-containing 100.0 1.1E-32 2.3E-37 248.5 22.7 286 125-449 265-575 (712)
58 KOG0310 Conserved WD40 repeat- 100.0 2.5E-32 5.4E-37 230.9 21.3 277 28-388 25-310 (487)
59 KOG0275 Conserved WD40 repeat- 100.0 6.1E-33 1.3E-37 223.1 16.6 298 62-448 201-507 (508)
60 KOG0645 WD40 repeat protein [G 100.0 1.3E-31 2.9E-36 210.0 23.3 211 204-449 8-224 (312)
61 KOG0274 Cdc4 and related F-box 100.0 1.8E-31 3.9E-36 243.6 27.7 249 56-389 231-484 (537)
62 KOG0277 Peroxisomal targeting 100.0 2.3E-32 4.9E-37 212.3 18.3 240 73-386 58-308 (311)
63 KOG0266 WD40 repeat-containing 100.0 1.5E-31 3.2E-36 245.4 26.7 243 125-450 157-409 (456)
64 KOG0294 WD40 repeat-containing 100.0 9E-31 2E-35 209.6 27.2 270 61-416 29-306 (362)
65 KOG0283 WD40 repeat-containing 100.0 3.3E-32 7.2E-37 245.4 21.1 256 73-388 265-577 (712)
66 PLN00181 protein SPA1-RELATED; 100.0 6.2E-31 1.3E-35 259.5 31.5 276 94-449 457-737 (793)
67 KOG0293 WD40 repeat-containing 100.0 1.6E-31 3.5E-36 221.3 22.0 274 17-388 230-514 (519)
68 KOG0300 WD40 repeat-containing 100.0 1.1E-31 2.4E-36 215.2 20.4 330 63-449 138-475 (481)
69 KOG0294 WD40 repeat-containing 100.0 1.1E-30 2.4E-35 209.2 25.8 276 87-450 3-281 (362)
70 KOG0296 Angio-associated migra 100.0 2.2E-31 4.9E-36 217.1 21.8 256 119-450 56-356 (399)
71 KOG0288 WD40 repeat protein Ti 100.0 1.6E-32 3.4E-37 227.3 14.0 286 64-448 166-459 (459)
72 KOG0289 mRNA splicing factor [ 100.0 2.1E-30 4.5E-35 216.1 25.9 279 76-449 220-505 (506)
73 cd00200 WD40 WD40 domain, foun 100.0 5.2E-30 1.1E-34 225.0 29.5 275 11-385 9-289 (289)
74 KOG0264 Nucleosome remodeling 100.0 2.1E-31 4.6E-36 223.6 19.4 270 73-388 122-405 (422)
75 KOG0310 Conserved WD40 repeat- 100.0 1.8E-30 3.9E-35 219.7 23.8 273 73-446 24-305 (487)
76 KOG0641 WD40 repeat protein [G 100.0 1.3E-28 2.9E-33 188.3 31.7 314 58-449 18-348 (350)
77 KOG0973 Histone transcription 100.0 2E-30 4.4E-35 240.0 26.0 312 73-449 11-354 (942)
78 KOG0305 Anaphase promoting com 100.0 3.8E-30 8.3E-35 226.1 24.6 264 84-449 187-460 (484)
79 KOG1446 Histone H3 (Lys4) meth 100.0 9.8E-29 2.1E-33 198.6 30.1 284 64-447 5-300 (311)
80 KOG1063 RNA polymerase II elon 100.0 8.5E-30 1.9E-34 224.4 25.8 361 57-449 173-647 (764)
81 KOG0647 mRNA export protein (c 100.0 8.8E-30 1.9E-34 202.8 23.2 263 74-421 26-307 (347)
82 KOG0299 U3 snoRNP-associated p 100.0 1.1E-29 2.5E-34 213.3 24.2 293 66-421 135-439 (479)
83 KOG0650 WD40 repeat nucleolar 100.0 3.3E-29 7.1E-34 217.2 27.5 324 65-447 392-732 (733)
84 KOG0264 Nucleosome remodeling 100.0 4.6E-30 9.9E-35 215.6 21.5 263 123-449 120-403 (422)
85 KOG0772 Uncharacterized conser 100.0 6.3E-30 1.4E-34 217.8 22.2 305 68-447 160-484 (641)
86 PTZ00420 coronin; Provisional 100.0 1.7E-28 3.7E-33 224.9 32.4 288 57-421 10-320 (568)
87 KOG0305 Anaphase promoting com 100.0 9.1E-30 2E-34 223.8 22.7 251 59-388 203-462 (484)
88 PTZ00421 coronin; Provisional 100.0 1.6E-28 3.5E-33 224.2 31.7 277 78-420 25-316 (493)
89 KOG0308 Conserved WD40 repeat- 100.0 9.3E-31 2E-35 228.8 15.9 277 84-450 36-327 (735)
90 PTZ00420 coronin; Provisional 100.0 2E-28 4.2E-33 224.5 30.1 203 205-450 69-293 (568)
91 KOG0278 Serine/threonine kinas 100.0 1.8E-30 4E-35 201.2 14.2 253 55-389 41-299 (334)
92 KOG4283 Transcription-coupled 100.0 1E-28 2.2E-33 196.2 22.9 303 73-448 41-363 (397)
93 PTZ00421 coronin; Provisional 100.0 2.1E-28 4.5E-33 223.5 28.4 251 128-450 21-290 (493)
94 KOG1036 Mitotic spindle checkp 100.0 1.8E-28 3.8E-33 196.2 24.2 268 75-440 13-294 (323)
95 KOG1332 Vesicle coat complex C 100.0 3.5E-29 7.5E-34 193.5 19.2 251 123-448 7-284 (299)
96 KOG0639 Transducin-like enhanc 100.0 3.3E-28 7.2E-33 206.8 25.0 281 73-449 417-703 (705)
97 KOG1408 WD40 repeat protein [F 100.0 3.6E-28 7.9E-33 215.0 25.6 317 79-449 328-712 (1080)
98 KOG2096 WD40 repeat protein [G 100.0 1.2E-27 2.6E-32 192.2 25.0 316 63-447 76-399 (420)
99 KOG2445 Nuclear pore complex c 100.0 3.5E-27 7.7E-32 188.5 27.4 262 123-449 9-317 (361)
100 KOG0641 WD40 repeat protein [G 100.0 2.9E-27 6.2E-32 181.0 25.5 299 13-387 34-349 (350)
101 KOG1332 Vesicle coat complex C 100.0 1.8E-28 3.9E-33 189.6 18.8 250 73-388 9-287 (299)
102 KOG0275 Conserved WD40 repeat- 100.0 6E-29 1.3E-33 200.2 16.4 248 125-449 211-466 (508)
103 KOG2445 Nuclear pore complex c 100.0 5.2E-27 1.1E-31 187.6 26.8 281 73-405 11-331 (361)
104 KOG2106 Uncharacterized conser 100.0 2.1E-26 4.5E-31 196.0 31.9 362 13-449 202-625 (626)
105 KOG0269 WD40 repeat-containing 100.0 3.2E-28 7E-33 217.1 20.3 284 77-445 41-335 (839)
106 KOG0299 U3 snoRNP-associated p 100.0 2.8E-27 6.2E-32 199.0 24.2 259 121-449 136-409 (479)
107 KOG1408 WD40 repeat protein [F 100.0 7.2E-27 1.6E-31 206.9 26.2 374 42-450 47-626 (1080)
108 KOG1539 WD repeat protein [Gen 100.0 4.8E-27 1E-31 211.4 25.0 331 40-449 169-605 (910)
109 KOG1407 WD40 repeat protein [F 100.0 3.7E-27 8.1E-32 184.1 21.0 237 123-446 16-257 (313)
110 KOG0308 Conserved WD40 repeat- 100.0 3.1E-28 6.8E-33 213.1 16.3 239 140-450 40-285 (735)
111 KOG0289 mRNA splicing factor [ 100.0 6.3E-27 1.4E-31 195.5 22.7 259 52-386 240-505 (506)
112 KOG0643 Translation initiation 100.0 1.1E-26 2.3E-31 182.2 22.3 232 121-420 4-244 (327)
113 KOG1446 Histone H3 (Lys4) meth 100.0 3.1E-26 6.7E-31 184.3 24.3 275 12-387 15-303 (311)
114 KOG0288 WD40 repeat protein Ti 100.0 1.1E-27 2.3E-32 198.8 15.4 244 64-385 210-459 (459)
115 KOG0772 Uncharacterized conser 100.0 7.9E-27 1.7E-31 199.0 19.3 260 117-448 157-443 (641)
116 KOG0321 WD40 repeat-containing 100.0 1E-26 2.2E-31 203.3 20.2 286 85-449 64-390 (720)
117 KOG0301 Phospholipase A2-activ 99.9 4.4E-26 9.5E-31 201.2 21.4 236 122-449 9-248 (745)
118 KOG2048 WD40 repeat protein [G 99.9 1E-24 2.2E-29 192.2 29.8 285 74-446 24-315 (691)
119 KOG0647 mRNA export protein (c 99.9 1.3E-25 2.8E-30 179.2 21.9 241 125-449 25-280 (347)
120 KOG1188 WD40 repeat protein [G 99.9 5.6E-26 1.2E-30 184.3 19.9 291 86-449 41-345 (376)
121 KOG1539 WD repeat protein [Gen 99.9 2.9E-25 6.4E-30 200.0 26.5 338 51-448 222-646 (910)
122 KOG0300 WD40 repeat-containing 99.9 3.5E-26 7.6E-31 183.8 17.7 271 53-388 170-477 (481)
123 KOG4328 WD40 protein [Function 99.9 3.9E-25 8.4E-30 186.1 23.8 305 63-448 176-493 (498)
124 KOG0646 WD40 repeat protein [G 99.9 2.2E-25 4.8E-30 188.1 22.2 281 88-450 10-307 (476)
125 KOG0267 Microtubule severing p 99.9 1.8E-27 4E-32 210.8 9.3 241 88-420 7-251 (825)
126 KOG0640 mRNA cleavage stimulat 99.9 3.2E-26 6.9E-31 183.4 14.9 298 14-387 115-426 (430)
127 KOG1036 Mitotic spindle checkp 99.9 7.4E-25 1.6E-29 175.6 22.7 238 126-450 12-262 (323)
128 KOG0268 Sof1-like rRNA process 99.9 4.7E-26 1E-30 186.1 16.1 252 51-388 87-346 (433)
129 KOG1274 WD40 repeat protein [G 99.9 1.9E-24 4E-29 197.0 27.7 267 73-420 11-283 (933)
130 KOG0269 WD40 repeat-containing 99.9 8.8E-27 1.9E-31 208.1 12.4 237 79-388 91-341 (839)
131 KOG0646 WD40 repeat protein [G 99.9 1.9E-25 4.2E-30 188.4 18.6 234 73-368 79-328 (476)
132 KOG0270 WD40 repeat-containing 99.9 1.2E-25 2.6E-30 188.5 16.5 252 137-449 192-448 (463)
133 KOG2106 Uncharacterized conser 99.9 7.3E-24 1.6E-28 180.6 27.5 288 59-448 186-519 (626)
134 KOG0270 WD40 repeat-containing 99.9 1.5E-25 3.3E-30 187.9 17.0 242 85-389 192-451 (463)
135 KOG1063 RNA polymerase II elon 99.9 6E-24 1.3E-28 187.8 26.7 359 50-449 31-436 (764)
136 KOG0302 Ribosome Assembly prot 99.9 3E-25 6.4E-30 182.4 17.1 269 122-448 146-436 (440)
137 KOG0302 Ribosome Assembly prot 99.9 2.6E-25 5.6E-30 182.7 16.4 209 207-449 148-377 (440)
138 KOG0973 Histone transcription 99.9 1.1E-24 2.5E-29 202.2 22.1 303 13-389 15-357 (942)
139 KOG2048 WD40 repeat protein [G 99.9 6.1E-23 1.3E-27 181.2 31.0 250 65-388 60-320 (691)
140 KOG1034 Transcriptional repres 99.9 1.2E-23 2.7E-28 169.9 23.7 318 60-449 24-382 (385)
141 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.2E-22 2.5E-27 179.7 30.5 269 85-450 1-279 (300)
142 KOG2055 WD40 repeat protein [G 99.9 1.2E-23 2.6E-28 177.4 21.9 285 75-450 213-512 (514)
143 KOG4283 Transcription-coupled 99.9 1.5E-23 3.2E-28 167.0 21.0 230 123-390 39-279 (397)
144 KOG1445 Tumor-specific antigen 99.9 8.8E-24 1.9E-28 185.2 19.5 117 306-449 629-749 (1012)
145 KOG4227 WD40 repeat protein [G 99.9 2E-23 4.3E-28 172.7 20.4 314 65-448 48-385 (609)
146 KOG0321 WD40 repeat-containing 99.9 5.4E-24 1.2E-28 186.4 17.7 302 73-419 98-429 (720)
147 KOG0267 Microtubule severing p 99.9 7.2E-25 1.6E-29 194.5 9.9 228 73-378 26-259 (825)
148 KOG1273 WD40 repeat protein [G 99.9 3.6E-22 7.8E-27 160.6 23.6 289 64-449 16-321 (405)
149 KOG0322 G-protein beta subunit 99.9 2E-23 4.4E-28 163.6 14.5 296 64-449 5-322 (323)
150 KOG0639 Transducin-like enhanc 99.9 1.1E-23 2.4E-28 179.5 13.9 235 73-386 463-703 (705)
151 KOG1274 WD40 repeat protein [G 99.9 6.6E-22 1.4E-26 180.6 24.8 247 124-450 10-262 (933)
152 KOG2919 Guanine nucleotide-bin 99.9 3.9E-22 8.4E-27 161.0 19.7 280 79-440 53-360 (406)
153 KOG4378 Nuclear protein COP1 [ 99.9 3E-22 6.5E-27 170.6 19.1 260 78-419 37-305 (673)
154 KOG1007 WD repeat protein TSSC 99.9 3.3E-21 7.2E-26 153.3 22.8 290 86-449 27-360 (370)
155 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.1E-20 2.4E-25 167.0 29.2 274 58-417 16-300 (300)
156 KOG0649 WD40 repeat protein [G 99.9 9.3E-21 2E-25 147.1 24.5 291 84-447 21-313 (325)
157 KOG2055 WD40 repeat protein [G 99.9 1.6E-21 3.6E-26 164.6 21.4 290 11-387 213-512 (514)
158 KOG0307 Vesicle coat complex C 99.9 7.4E-23 1.6E-27 191.2 14.4 246 128-450 65-327 (1049)
159 KOG1034 Transcriptional repres 99.9 1.7E-22 3.8E-27 163.3 13.8 260 64-387 78-383 (385)
160 KOG2096 WD40 repeat protein [G 99.9 8.1E-22 1.8E-26 158.9 17.4 219 204-449 80-307 (420)
161 KOG1273 WD40 repeat protein [G 99.9 9.5E-22 2E-26 158.3 17.5 244 130-448 26-278 (405)
162 KOG0307 Vesicle coat complex C 99.9 3E-22 6.6E-27 187.2 15.6 249 74-389 63-329 (1049)
163 KOG1009 Chromatin assembly com 99.9 6.1E-21 1.3E-25 158.7 21.4 308 75-446 13-368 (434)
164 KOG1310 WD40 repeat protein [G 99.9 2.3E-21 4.9E-26 167.4 19.4 227 65-337 42-306 (758)
165 KOG1007 WD repeat protein TSSC 99.9 4.2E-21 9.1E-26 152.7 18.5 271 67-388 57-362 (370)
166 KOG4378 Nuclear protein COP1 [ 99.9 2.8E-21 6.2E-26 164.7 17.4 261 95-450 12-280 (673)
167 KOG0642 Cell-cycle nuclear pro 99.9 1.3E-21 2.8E-26 169.4 15.6 265 63-388 284-562 (577)
168 KOG4328 WD40 protein [Function 99.9 3.6E-21 7.9E-26 162.4 17.6 209 205-449 181-398 (498)
169 KOG1334 WD40 repeat protein [G 99.9 1E-21 2.2E-26 167.1 13.4 308 65-448 134-464 (559)
170 KOG1517 Guanine nucleotide bin 99.9 6.4E-20 1.4E-24 170.1 23.4 293 85-449 1076-1380(1387)
171 KOG2919 Guanine nucleotide-bin 99.9 1.1E-19 2.3E-24 147.1 21.4 294 10-378 48-361 (406)
172 KOG0650 WD40 repeat nucleolar 99.9 5E-20 1.1E-24 160.7 20.0 246 116-448 389-678 (733)
173 KOG0290 Conserved WD40 repeat- 99.9 2.4E-19 5.2E-24 143.0 20.7 279 75-420 44-348 (364)
174 KOG0303 Actin-binding protein 99.9 8.4E-20 1.8E-24 151.5 18.7 208 73-338 79-298 (472)
175 KOG1587 Cytoplasmic dynein int 99.9 3.3E-19 7.1E-24 162.2 24.3 275 94-449 221-515 (555)
176 KOG0290 Conserved WD40 repeat- 99.8 1.7E-19 3.7E-24 143.8 18.7 207 208-450 94-318 (364)
177 KOG0642 Cell-cycle nuclear pro 99.8 6.8E-21 1.5E-25 165.0 11.5 294 85-449 242-560 (577)
178 KOG1538 Uncharacterized conser 99.8 9.2E-20 2E-24 161.2 18.2 269 13-388 14-294 (1081)
179 KOG1240 Protein kinase contain 99.8 2E-18 4.4E-23 162.7 26.2 361 57-448 1032-1431(1431)
180 KOG1538 Uncharacterized conser 99.8 2.7E-19 5.9E-24 158.2 19.3 268 77-449 14-292 (1081)
181 KOG0303 Actin-binding protein 99.8 4E-19 8.7E-24 147.5 19.1 254 77-389 29-296 (472)
182 KOG1963 WD40 repeat protein [G 99.8 1.9E-17 4.2E-22 151.3 31.7 377 52-449 36-537 (792)
183 COG2319 FOG: WD40 repeat [Gene 99.8 2.3E-17 5E-22 153.9 33.7 279 73-450 63-359 (466)
184 KOG0644 Uncharacterized conser 99.8 2.8E-20 6.1E-25 168.3 11.3 273 64-447 181-465 (1113)
185 KOG1587 Cytoplasmic dynein int 99.8 6.3E-18 1.4E-22 154.0 25.3 258 74-388 241-517 (555)
186 KOG0649 WD40 repeat protein [G 99.8 8.1E-18 1.8E-22 130.9 19.8 247 129-449 12-273 (325)
187 KOG1523 Actin-related protein 99.8 3.6E-17 7.8E-22 132.5 23.8 215 73-337 8-239 (361)
188 KOG1445 Tumor-specific antigen 99.8 6.2E-18 1.4E-22 148.9 18.0 205 210-449 627-843 (1012)
189 KOG0322 G-protein beta subunit 99.8 1.3E-18 2.7E-23 137.0 12.2 291 31-386 16-322 (323)
190 KOG2110 Uncharacterized conser 99.8 8.8E-16 1.9E-20 127.0 28.1 236 74-389 4-250 (391)
191 COG2319 FOG: WD40 repeat [Gene 99.8 1.6E-15 3.6E-20 141.4 34.3 286 63-450 145-442 (466)
192 KOG1188 WD40 repeat protein [G 99.8 7.8E-18 1.7E-22 137.4 15.6 193 223-450 41-242 (376)
193 KOG1524 WD40 repeat-containing 99.8 9.5E-18 2.1E-22 144.9 16.5 266 73-446 12-282 (737)
194 KOG1517 Guanine nucleotide bin 99.8 3.4E-17 7.4E-22 152.3 20.4 277 52-388 1085-1382(1387)
195 KOG1272 WD40-repeat-containing 99.8 2.4E-18 5.2E-23 145.9 11.6 257 77-420 131-392 (545)
196 KOG0644 Uncharacterized conser 99.8 3.4E-19 7.4E-24 161.4 6.9 235 123-449 186-425 (1113)
197 PRK11028 6-phosphogluconolacto 99.8 2E-15 4.4E-20 134.6 30.4 277 88-449 5-303 (330)
198 KOG2394 WD40 protein DMR-N9 [G 99.8 1.1E-15 2.4E-20 132.3 25.2 136 211-369 220-384 (636)
199 KOG1310 WD40 repeat protein [G 99.7 4.5E-17 9.8E-22 141.2 15.6 231 203-449 43-302 (758)
200 KOG1409 Uncharacterized conser 99.7 1.8E-16 3.9E-21 129.7 17.3 254 61-389 12-272 (404)
201 KOG1354 Serine/threonine prote 99.7 5.6E-16 1.2E-20 126.8 19.4 292 73-389 23-361 (433)
202 KOG0771 Prolactin regulatory e 99.7 1.1E-16 2.4E-21 134.5 15.5 199 131-388 148-355 (398)
203 KOG4227 WD40 repeat protein [G 99.7 2.5E-16 5.4E-21 131.1 15.4 257 123-449 52-321 (609)
204 KOG1523 Actin-related protein 99.7 5.9E-15 1.3E-19 119.8 21.8 241 126-420 9-262 (361)
205 KOG1240 Protein kinase contain 99.7 4.5E-15 9.8E-20 140.6 24.0 262 123-449 1044-1333(1431)
206 KOG0771 Prolactin regulatory e 99.7 5.8E-16 1.3E-20 130.3 15.1 196 214-449 148-353 (398)
207 KOG3881 Uncharacterized conser 99.7 4.1E-15 8.8E-20 123.9 19.2 251 73-388 53-321 (412)
208 PRK01742 tolB translocation pr 99.7 2.5E-15 5.4E-20 138.2 19.9 235 94-419 183-427 (429)
209 KOG2139 WD40 repeat protein [G 99.7 8.6E-14 1.9E-18 115.0 25.0 259 76-388 99-384 (445)
210 KOG2321 WD40 repeat protein [G 99.7 3.5E-14 7.6E-19 124.2 22.4 279 72-447 48-340 (703)
211 KOG2110 Uncharacterized conser 99.7 1.9E-13 4.2E-18 113.3 25.4 188 213-450 49-248 (391)
212 KOG1963 WD40 repeat protein [G 99.7 1.2E-13 2.6E-18 126.9 26.5 330 73-449 13-374 (792)
213 KOG1524 WD40 repeat-containing 99.7 3.8E-15 8.3E-20 129.0 15.8 204 85-383 75-282 (737)
214 KOG0974 WD-repeat protein WDR6 99.7 1E-14 2.2E-19 136.1 19.0 197 210-449 87-287 (967)
215 KOG1009 Chromatin assembly com 99.6 1.5E-15 3.2E-20 127.1 11.7 177 252-449 12-194 (434)
216 KOG1272 WD40-repeat-containing 99.6 3.5E-16 7.5E-21 133.0 7.1 191 212-450 131-323 (545)
217 KOG2111 Uncharacterized conser 99.6 1.9E-12 4.2E-17 105.4 27.0 235 78-389 8-258 (346)
218 KOG3881 Uncharacterized conser 99.6 5E-14 1.1E-18 117.6 18.2 214 73-339 103-325 (412)
219 KOG2111 Uncharacterized conser 99.6 3.3E-13 7.2E-18 109.7 21.7 174 232-450 75-256 (346)
220 KOG2394 WD40 protein DMR-N9 [G 99.6 1.3E-14 2.8E-19 125.8 14.4 162 128-314 220-384 (636)
221 PRK11028 6-phosphogluconolacto 99.6 1.1E-12 2.3E-17 117.1 26.9 208 211-449 35-257 (330)
222 PRK01742 tolB translocation pr 99.6 9.4E-14 2E-18 127.8 18.9 192 208-449 201-400 (429)
223 PF02239 Cytochrom_D1: Cytochr 99.6 2E-12 4.4E-17 115.0 26.2 280 86-450 6-302 (369)
224 KOG1334 WD40 repeat protein [G 99.6 5.5E-14 1.2E-18 120.6 13.9 265 122-448 137-422 (559)
225 PRK03629 tolB translocation pr 99.6 2.4E-12 5.2E-17 118.2 24.5 231 96-418 180-428 (429)
226 KOG4497 Uncharacterized conser 99.5 1.1E-12 2.3E-17 107.3 18.5 282 75-448 10-389 (447)
227 KOG0280 Uncharacterized conser 99.5 6.6E-12 1.4E-16 101.2 21.3 273 93-448 44-331 (339)
228 KOG4497 Uncharacterized conser 99.5 2.2E-11 4.8E-16 99.8 23.2 302 75-443 48-425 (447)
229 PRK04922 tolB translocation pr 99.5 1.2E-11 2.5E-16 114.2 23.6 231 95-417 184-432 (433)
230 KOG4714 Nucleoporin [Nuclear s 99.5 2.3E-12 5E-17 102.0 15.4 259 77-385 38-316 (319)
231 KOG2139 WD40 repeat protein [G 99.5 4.3E-12 9.3E-17 105.2 16.6 187 211-421 99-294 (445)
232 PRK05137 tolB translocation pr 99.5 3.6E-11 7.9E-16 111.1 24.6 173 96-336 183-368 (435)
233 PF02239 Cytochrom_D1: Cytochr 99.4 1.8E-10 3.9E-15 102.7 25.9 303 57-449 20-346 (369)
234 PRK02889 tolB translocation pr 99.4 2.4E-11 5.1E-16 111.8 20.8 218 124-418 192-425 (427)
235 COG5170 CDC55 Serine/threonine 99.4 6.2E-12 1.3E-16 102.2 14.5 261 74-337 25-312 (460)
236 PRK03629 tolB translocation pr 99.4 6.2E-11 1.4E-15 108.9 23.1 219 66-369 191-427 (429)
237 KOG1064 RAVE (regulator of V-A 99.4 4.1E-12 8.8E-17 125.3 15.2 226 73-380 2206-2439(2439)
238 KOG4547 WD40 repeat-containing 99.4 9.3E-11 2E-15 103.7 22.1 144 221-388 69-221 (541)
239 TIGR03300 assembly_YfgL outer 99.4 2.7E-09 5.8E-14 97.3 32.7 299 81-447 61-376 (377)
240 PRK05137 tolB translocation pr 99.4 1.2E-10 2.7E-15 107.7 24.1 178 208-420 199-389 (435)
241 PF08662 eIF2A: Eukaryotic tra 99.4 3.8E-11 8.2E-16 97.0 18.0 115 209-339 58-183 (194)
242 PF08662 eIF2A: Eukaryotic tra 99.4 2.5E-11 5.3E-16 98.1 16.4 149 214-388 9-180 (194)
243 PRK04922 tolB translocation pr 99.4 7E-11 1.5E-15 109.1 21.1 178 208-420 201-391 (433)
244 KOG1409 Uncharacterized conser 99.4 1.9E-11 4.1E-16 100.7 15.1 221 205-450 19-270 (404)
245 KOG2321 WD40 repeat protein [G 99.4 6E-11 1.3E-15 104.4 18.7 241 124-448 48-300 (703)
246 KOG1354 Serine/threonine prote 99.4 4.3E-11 9.3E-16 98.7 16.5 271 127-449 25-358 (433)
247 KOG0974 WD-repeat protein WDR6 99.4 2.7E-11 5.9E-16 113.8 16.6 184 84-335 98-289 (967)
248 KOG1912 WD40 repeat protein [G 99.4 3.1E-10 6.8E-15 103.5 22.0 355 47-450 29-551 (1062)
249 KOG1064 RAVE (regulator of V-A 99.4 8.2E-12 1.8E-16 123.2 12.8 192 123-389 2204-2400(2439)
250 KOG4547 WD40 repeat-containing 99.3 1.1E-10 2.5E-15 103.1 18.4 187 220-449 3-219 (541)
251 KOG0280 Uncharacterized conser 99.3 2.7E-10 5.9E-15 92.1 17.7 250 75-388 69-334 (339)
252 PF10282 Lactonase: Lactonase, 99.3 3.3E-08 7.2E-13 88.4 33.2 283 88-449 2-321 (345)
253 KOG0309 Conserved WD40 repeat- 99.3 2.3E-11 5E-16 110.1 12.7 298 75-449 24-338 (1081)
254 KOG4190 Uncharacterized conser 99.3 1.1E-11 2.3E-16 108.7 10.2 296 69-446 729-1032(1034)
255 TIGR02800 propeller_TolB tol-p 99.3 8.8E-10 1.9E-14 102.1 23.5 178 208-420 187-377 (417)
256 TIGR02800 propeller_TolB tol-p 99.3 1.1E-09 2.4E-14 101.5 24.1 174 96-337 171-357 (417)
257 PRK02889 tolB translocation pr 99.3 6.8E-10 1.5E-14 102.2 21.9 180 208-420 193-383 (427)
258 PRK00178 tolB translocation pr 99.3 3.5E-09 7.6E-14 98.2 24.8 175 96-338 180-367 (430)
259 PF04762 IKI3: IKI3 family; I 99.3 1.8E-08 4E-13 99.9 30.9 317 73-449 73-455 (928)
260 KOG2315 Predicted translation 99.3 4.6E-09 1E-13 92.6 23.3 304 77-449 36-389 (566)
261 KOG4190 Uncharacterized conser 99.3 1.5E-11 3.3E-16 107.7 8.0 216 120-389 728-950 (1034)
262 COG4946 Uncharacterized protei 99.2 1.3E-08 2.7E-13 88.1 24.6 170 84-323 331-507 (668)
263 KOG2041 WD40 repeat protein [G 99.2 1.6E-09 3.4E-14 98.3 19.7 279 75-420 14-321 (1189)
264 PRK04792 tolB translocation pr 99.2 7E-09 1.5E-13 95.9 23.4 216 123-417 213-446 (448)
265 TIGR03300 assembly_YfgL outer 99.1 8.4E-08 1.8E-12 87.5 27.0 281 59-384 81-376 (377)
266 PRK00178 tolB translocation pr 99.1 1.5E-08 3.2E-13 94.0 22.4 178 208-420 196-386 (430)
267 PF10282 Lactonase: Lactonase, 99.1 3.1E-07 6.6E-12 82.3 29.9 262 76-387 37-322 (345)
268 KOG4532 WD40-like repeat conta 99.1 2.6E-08 5.6E-13 79.9 19.4 196 84-339 83-287 (344)
269 PLN02919 haloacid dehalogenase 99.1 1.3E-07 2.8E-12 95.9 28.6 283 80-389 572-890 (1057)
270 PRK01029 tolB translocation pr 99.1 5.6E-08 1.2E-12 89.2 23.8 179 212-418 232-425 (428)
271 COG5354 Uncharacterized protei 99.1 2E-07 4.4E-12 81.6 24.5 309 74-449 31-394 (561)
272 KOG0309 Conserved WD40 repeat- 99.1 5.4E-10 1.2E-14 101.5 9.2 239 87-388 84-340 (1081)
273 PRK04792 tolB translocation pr 99.1 6E-08 1.3E-12 89.7 22.9 118 209-337 216-341 (448)
274 PLN02919 haloacid dehalogenase 99.1 3.7E-07 7.9E-12 92.7 29.7 225 212-450 625-888 (1057)
275 COG2706 3-carboxymuconate cycl 99.1 2.2E-06 4.7E-11 72.3 28.9 280 94-449 15-320 (346)
276 TIGR02658 TTQ_MADH_Hv methylam 99.1 7.1E-07 1.5E-11 78.1 27.4 264 54-341 28-337 (352)
277 PRK11138 outer membrane biogen 99.0 2.5E-07 5.4E-12 84.7 25.3 271 81-449 116-393 (394)
278 PF15492 Nbas_N: Neuroblastoma 99.0 5E-07 1.1E-11 73.8 23.2 189 213-449 46-258 (282)
279 KOG4714 Nucleoporin [Nuclear s 99.0 1.4E-08 3E-13 81.0 13.7 158 209-388 88-255 (319)
280 TIGR02658 TTQ_MADH_Hv methylam 99.0 3.2E-06 6.9E-11 74.0 29.0 266 95-449 27-329 (352)
281 KOG4532 WD40-like repeat conta 99.0 4.8E-08 1E-12 78.3 16.1 198 221-450 83-282 (344)
282 PF04762 IKI3: IKI3 family; I 99.0 2.1E-06 4.6E-11 85.6 30.8 209 74-336 208-458 (928)
283 KOG3914 WD repeat protein WDR4 99.0 1.7E-08 3.7E-13 85.5 13.4 156 212-391 64-227 (390)
284 KOG2315 Predicted translation 99.0 8E-08 1.7E-12 85.0 18.0 270 77-388 75-391 (566)
285 KOG0882 Cyclophilin-related pe 99.0 2.7E-08 5.8E-13 85.6 14.5 264 73-389 7-307 (558)
286 KOG2041 WD40 repeat protein [G 99.0 1.6E-08 3.4E-13 92.0 13.7 255 126-442 13-280 (1189)
287 PRK01029 tolB translocation pr 98.9 4E-07 8.6E-12 83.7 22.6 115 213-337 283-406 (428)
288 KOG3914 WD repeat protein WDR4 98.9 2.1E-08 4.5E-13 85.0 12.3 81 206-288 147-227 (390)
289 PRK11138 outer membrane biogen 98.9 1.5E-06 3.2E-11 79.7 25.5 238 82-389 66-314 (394)
290 KOG1912 WD40 repeat protein [G 98.9 7.6E-08 1.6E-12 88.5 16.2 245 76-388 16-305 (1062)
291 KOG2066 Vacuolar assembly/sort 98.9 1.5E-07 3.3E-12 87.0 17.8 192 127-388 39-234 (846)
292 KOG2695 WD40 repeat protein [G 98.9 2.6E-09 5.7E-14 88.5 5.4 148 268-450 226-376 (425)
293 KOG1832 HIV-1 Vpr-binding prot 98.9 2.1E-09 4.6E-14 99.8 4.9 245 15-339 1043-1296(1516)
294 PF08450 SGL: SMP-30/Gluconola 98.9 1.4E-05 3E-10 68.1 27.8 217 80-368 4-233 (246)
295 PF00400 WD40: WD domain, G-be 98.9 9.5E-09 2.1E-13 59.0 5.8 38 398-448 2-39 (39)
296 KOG1275 PAB-dependent poly(A) 98.9 4.8E-08 1E-12 91.3 13.2 187 84-333 146-341 (1118)
297 KOG2695 WD40 repeat protein [G 98.8 1.3E-08 2.7E-13 84.5 7.7 124 209-339 251-381 (425)
298 COG5170 CDC55 Serine/threonine 98.8 8.4E-08 1.8E-12 78.7 12.1 230 126-389 25-311 (460)
299 PF13360 PQQ_2: PQQ-like domai 98.8 4.6E-06 1E-10 70.8 23.0 222 93-389 1-232 (238)
300 PF00400 WD40: WD domain, G-be 98.8 2.1E-08 4.5E-13 57.6 5.9 37 63-101 1-39 (39)
301 COG2706 3-carboxymuconate cycl 98.8 5.4E-05 1.2E-09 64.2 27.7 266 73-388 37-322 (346)
302 PF13360 PQQ_2: PQQ-like domai 98.8 3.3E-06 7.2E-11 71.7 21.1 194 221-450 35-230 (238)
303 PF15492 Nbas_N: Neuroblastoma 98.8 2.6E-06 5.7E-11 69.7 18.6 201 78-339 46-264 (282)
304 KOG1275 PAB-dependent poly(A) 98.7 3.1E-07 6.8E-12 86.1 13.8 183 221-448 146-340 (1118)
305 KOG3621 WD40 repeat-containing 98.7 1.6E-05 3.5E-10 73.0 23.2 157 77-286 37-199 (726)
306 KOG2314 Translation initiation 98.7 2.5E-05 5.4E-10 69.7 23.6 306 84-449 221-572 (698)
307 COG4946 Uncharacterized protei 98.7 8.5E-06 1.8E-10 71.2 19.6 121 208-339 357-482 (668)
308 KOG4649 PQQ (pyrrolo-quinoline 98.6 0.00014 3E-09 58.9 23.9 140 85-283 23-164 (354)
309 KOG0882 Cyclophilin-related pe 98.6 1E-06 2.2E-11 76.2 12.3 218 125-390 7-234 (558)
310 KOG2066 Vacuolar assembly/sort 98.6 3E-06 6.4E-11 78.8 15.3 190 75-335 39-234 (846)
311 KOG1645 RING-finger-containing 98.6 4.3E-06 9.4E-11 71.4 15.0 89 55-158 175-269 (463)
312 KOG1920 IkappaB kinase complex 98.5 5.9E-05 1.3E-09 73.8 24.1 230 75-337 68-325 (1265)
313 PRK04043 tolB translocation pr 98.5 3.7E-05 8E-10 70.4 22.1 174 212-420 189-380 (419)
314 PF11768 DUF3312: Protein of u 98.5 0.00026 5.7E-09 64.3 26.1 114 213-337 208-332 (545)
315 PF08450 SGL: SMP-30/Gluconola 98.5 0.00057 1.2E-08 58.2 27.1 175 213-416 42-233 (246)
316 KOG1645 RING-finger-containing 98.5 1.3E-05 2.7E-10 68.6 15.8 80 206-287 189-269 (463)
317 KOG1008 Uncharacterized conser 98.5 2.6E-07 5.6E-12 83.4 6.1 203 73-335 54-276 (783)
318 KOG1920 IkappaB kinase complex 98.5 0.00048 1E-08 67.7 27.7 197 128-388 69-323 (1265)
319 PF08596 Lgl_C: Lethal giant l 98.4 0.00025 5.5E-09 63.9 24.2 267 129-420 3-319 (395)
320 PRK04043 tolB translocation pr 98.4 0.00036 7.8E-09 64.0 25.7 113 212-337 234-360 (419)
321 PF11768 DUF3312: Protein of u 98.4 0.0013 2.8E-08 60.0 29.5 148 253-420 205-370 (545)
322 KOG2114 Vacuolar assembly/sort 98.4 9.9E-05 2.1E-09 69.6 20.6 207 77-337 27-246 (933)
323 KOG1008 Uncharacterized conser 98.4 1.1E-07 2.4E-12 85.6 1.3 205 210-450 56-275 (783)
324 cd00216 PQQ_DH Dehydrogenases 98.4 0.0013 2.8E-08 62.1 27.9 285 83-389 59-426 (488)
325 COG5354 Uncharacterized protei 98.3 0.00031 6.8E-09 62.3 21.6 236 126-450 31-306 (561)
326 KOG2314 Translation initiation 98.3 8.2E-05 1.8E-09 66.5 18.0 209 212-449 251-524 (698)
327 KOG2114 Vacuolar assembly/sort 98.3 8E-05 1.7E-09 70.2 16.9 183 217-420 30-227 (933)
328 KOG3621 WD40 repeat-containing 98.2 1.5E-05 3.3E-10 73.1 11.5 158 209-379 32-190 (726)
329 KOG1832 HIV-1 Vpr-binding prot 98.2 7.5E-07 1.6E-11 83.5 2.9 161 204-389 1095-1257(1516)
330 PF07433 DUF1513: Protein of u 98.1 0.0044 9.5E-08 52.8 25.3 198 85-339 17-252 (305)
331 PF03178 CPSF_A: CPSF A subuni 98.1 0.0009 1.9E-08 59.5 19.8 183 232-449 2-201 (321)
332 PF07433 DUF1513: Protein of u 98.0 0.0065 1.4E-07 51.8 24.2 157 216-389 56-249 (305)
333 PF04053 Coatomer_WDAD: Coatom 98.0 0.001 2.3E-08 60.9 19.0 231 125-449 30-261 (443)
334 PF08596 Lgl_C: Lethal giant l 98.0 0.0017 3.7E-08 58.6 20.1 210 212-449 3-289 (395)
335 PF04841 Vps16_N: Vps16, N-ter 98.0 0.012 2.6E-07 54.0 25.9 70 304-385 216-285 (410)
336 PF00780 CNH: CNH domain; Int 98.0 0.0085 1.8E-07 52.1 24.7 247 84-405 6-265 (275)
337 PF04841 Vps16_N: Vps16, N-ter 98.0 0.013 2.7E-07 53.9 26.4 209 61-282 68-285 (410)
338 KOG3617 WD40 and TPR repeat-co 97.9 0.00044 9.6E-09 65.4 14.5 68 78-157 62-133 (1416)
339 PF03178 CPSF_A: CPSF A subuni 97.9 0.0034 7.4E-08 55.9 19.9 214 59-331 8-262 (321)
340 KOG1897 Damage-specific DNA bi 97.9 0.03 6.4E-07 54.7 28.2 161 233-420 751-926 (1096)
341 PF14783 BBS2_Mid: Ciliary BBS 97.8 0.0018 4E-08 45.7 13.4 100 213-329 2-109 (111)
342 KOG4649 PQQ (pyrrolo-quinoline 97.8 0.0059 1.3E-07 49.8 17.5 108 222-341 23-130 (354)
343 PRK02888 nitrous-oxide reducta 97.8 0.0079 1.7E-07 56.5 20.9 83 304-388 320-405 (635)
344 KOG2444 WD40 repeat protein [G 97.8 9.2E-05 2E-09 58.9 7.0 140 268-450 32-177 (238)
345 PF06977 SdiA-regulated: SdiA- 97.8 0.017 3.8E-07 48.4 23.2 197 208-420 19-234 (248)
346 PF00780 CNH: CNH domain; Int 97.7 0.022 4.7E-07 49.5 21.9 118 212-338 37-169 (275)
347 smart00320 WD40 WD40 repeats. 97.7 0.00011 2.3E-09 41.4 4.7 38 398-448 3-40 (40)
348 COG3386 Gluconolactonase [Carb 97.7 0.025 5.4E-07 49.3 20.7 142 212-369 112-264 (307)
349 smart00320 WD40 WD40 repeats. 97.7 0.00017 3.7E-09 40.5 5.4 37 63-101 2-40 (40)
350 KOG4640 Anaphase-promoting com 97.6 0.00036 7.8E-09 63.7 9.3 91 128-262 21-114 (665)
351 PF14783 BBS2_Mid: Ciliary BBS 97.5 0.01 2.2E-07 42.0 13.4 103 307-445 2-109 (111)
352 cd00216 PQQ_DH Dehydrogenases 97.5 0.091 2E-06 49.8 24.3 108 224-340 303-430 (488)
353 PF08553 VID27: VID27 cytoplas 97.5 0.015 3.3E-07 56.7 18.8 100 224-334 544-647 (794)
354 KOG4640 Anaphase-promoting com 97.5 0.00049 1.1E-08 62.9 8.0 77 253-339 20-97 (665)
355 KOG2395 Protein involved in va 97.5 0.0089 1.9E-07 53.9 15.2 111 213-334 378-500 (644)
356 KOG4441 Proteins containing BT 97.4 0.045 9.7E-07 52.5 21.1 230 84-388 284-547 (571)
357 KOG3617 WD40 and TPR repeat-co 97.4 0.00022 4.7E-09 67.3 5.3 111 212-334 17-131 (1416)
358 PHA02713 hypothetical protein; 97.4 0.0092 2E-07 57.2 16.2 187 221-449 303-532 (557)
359 KOG1897 Damage-specific DNA bi 97.4 0.16 3.5E-06 49.9 28.7 324 75-447 530-895 (1096)
360 PF04053 Coatomer_WDAD: Coatom 97.3 0.081 1.8E-06 48.8 20.4 224 73-387 30-262 (443)
361 PF08553 VID27: VID27 cytoplas 97.3 0.0088 1.9E-07 58.3 14.5 128 268-420 495-631 (794)
362 PF06433 Me-amine-dh_H: Methyl 97.3 0.1 2.2E-06 45.4 21.8 265 95-389 17-322 (342)
363 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.2 0.2 4.3E-06 47.8 28.4 188 81-288 116-337 (527)
364 PHA02713 hypothetical protein; 97.2 0.076 1.6E-06 51.1 20.2 146 221-389 351-535 (557)
365 PF14583 Pectate_lyase22: Olig 97.2 0.14 3E-06 45.5 23.5 99 232-337 168-275 (386)
366 PF06977 SdiA-regulated: SdiA- 97.2 0.11 2.4E-06 43.7 23.7 214 70-331 16-247 (248)
367 PF05694 SBP56: 56kDa selenium 97.2 0.17 3.6E-06 45.5 19.9 106 231-336 221-344 (461)
368 KOG4441 Proteins containing BT 97.2 0.081 1.8E-06 50.8 19.5 181 221-443 332-534 (571)
369 PRK02888 nitrous-oxide reducta 97.2 0.034 7.3E-07 52.5 16.3 112 219-335 285-405 (635)
370 KOG2079 Vacuolar assembly/sort 97.0 0.034 7.5E-07 54.8 15.5 72 209-283 129-202 (1206)
371 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.0 0.34 7.3E-06 46.3 29.1 76 84-160 68-143 (527)
372 PF12894 Apc4_WD40: Anaphase-p 97.0 0.0031 6.8E-08 37.0 5.2 33 304-337 11-43 (47)
373 KOG2395 Protein involved in va 96.9 0.034 7.4E-07 50.4 13.4 128 268-420 348-484 (644)
374 KOG4499 Ca2+-binding protein R 96.8 0.19 4.2E-06 40.7 17.5 140 212-370 110-264 (310)
375 PF05096 Glu_cyclase_2: Glutam 96.8 0.24 5.2E-06 41.6 20.8 115 212-339 46-162 (264)
376 PF12894 Apc4_WD40: Anaphase-p 96.8 0.0049 1.1E-07 36.2 5.1 35 209-244 10-44 (47)
377 KOG2079 Vacuolar assembly/sort 96.8 0.0054 1.2E-07 60.0 8.1 95 266-380 99-198 (1206)
378 KOG2444 WD40 repeat protein [G 96.8 0.003 6.6E-08 50.5 5.1 107 221-335 69-178 (238)
379 COG3204 Uncharacterized protei 96.7 0.31 6.7E-06 41.2 17.4 177 208-388 83-264 (316)
380 PF02897 Peptidase_S9_N: Proly 96.7 0.55 1.2E-05 43.6 25.6 118 213-336 126-262 (414)
381 PHA03098 kelch-like protein; P 96.7 0.2 4.2E-06 48.4 17.9 108 221-338 294-418 (534)
382 PF15390 DUF4613: Domain of un 96.6 0.17 3.7E-06 46.9 15.3 159 76-286 20-188 (671)
383 KOG1916 Nuclear protein, conta 96.5 0.0013 2.8E-08 62.8 2.0 162 207-388 129-324 (1283)
384 PF05096 Glu_cyclase_2: Glutam 96.5 0.41 8.8E-06 40.3 25.4 199 63-323 33-249 (264)
385 PHA03098 kelch-like protein; P 96.5 0.64 1.4E-05 44.9 20.3 147 221-388 342-512 (534)
386 PRK13616 lipoprotein LpqB; Pro 96.4 0.46 1E-05 45.8 18.3 151 211-387 350-525 (591)
387 PF00930 DPPIV_N: Dipeptidyl p 96.3 0.82 1.8E-05 41.4 21.6 55 94-161 22-77 (353)
388 KOG2280 Vacuolar assembly/sort 96.2 0.2 4.4E-06 47.7 14.3 37 304-340 216-252 (829)
389 COG3391 Uncharacterized conser 96.2 0.92 2E-05 41.5 19.9 114 213-337 76-193 (381)
390 PHA02790 Kelch-like protein; P 96.2 0.62 1.3E-05 44.1 18.0 145 221-389 271-425 (480)
391 COG0823 TolB Periplasmic compo 96.2 0.18 3.9E-06 46.4 13.8 116 210-336 192-316 (425)
392 PF06433 Me-amine-dh_H: Methyl 96.2 0.77 1.7E-05 40.2 16.9 203 214-450 98-320 (342)
393 KOG3630 Nuclear pore complex, 96.1 0.19 4.1E-06 50.3 13.9 141 212-370 102-254 (1405)
394 TIGR03074 PQQ_membr_DH membran 95.9 2.1 4.6E-05 42.7 20.9 73 84-160 193-283 (764)
395 PF00930 DPPIV_N: Dipeptidyl p 95.5 1.8 3.8E-05 39.2 20.7 190 211-420 43-293 (353)
396 PF14727 PHTB1_N: PTHB1 N-term 95.5 1.1 2.3E-05 41.1 15.4 153 265-448 36-202 (418)
397 COG3490 Uncharacterized protei 95.5 1.3 2.9E-05 37.3 17.7 69 303-386 278-347 (366)
398 COG5276 Uncharacterized conser 95.5 1.4 3E-05 37.4 18.7 190 202-420 33-226 (370)
399 PF08728 CRT10: CRT10; InterP 95.4 0.81 1.8E-05 44.4 14.9 105 221-333 113-245 (717)
400 COG0823 TolB Periplasmic compo 95.4 0.34 7.4E-06 44.6 12.2 77 252-337 191-273 (425)
401 PF14655 RAB3GAP2_N: Rab3 GTPa 95.4 2.1 4.7E-05 39.1 25.3 91 215-314 6-118 (415)
402 KOG2280 Vacuolar assembly/sort 95.4 1.4 3.1E-05 42.4 16.0 190 62-262 72-268 (829)
403 COG3386 Gluconolactonase [Carb 95.4 1.8 3.8E-05 38.0 21.2 179 212-418 67-265 (307)
404 KOG3630 Nuclear pore complex, 95.4 0.17 3.6E-06 50.6 10.3 156 64-264 90-254 (1405)
405 KOG2247 WD40 repeat-containing 95.3 0.0046 1E-07 55.2 -0.1 145 212-381 36-182 (615)
406 PF08728 CRT10: CRT10; InterP 95.2 1.7 3.6E-05 42.4 16.4 153 222-386 49-245 (717)
407 PF12234 Rav1p_C: RAVE protein 95.1 0.86 1.9E-05 43.8 14.0 121 212-334 31-156 (631)
408 PF10168 Nup88: Nuclear pore c 95.0 3.8 8.3E-05 40.7 18.6 75 212-287 86-182 (717)
409 PF12234 Rav1p_C: RAVE protein 94.9 0.73 1.6E-05 44.3 13.1 105 304-420 29-141 (631)
410 PRK13616 lipoprotein LpqB; Pro 94.9 3.2 6.9E-05 40.3 17.6 149 213-383 399-564 (591)
411 PHA02790 Kelch-like protein; P 94.8 3.7 8.1E-05 39.0 18.5 144 221-388 318-471 (480)
412 PF10313 DUF2415: Uncharacteri 94.5 0.18 3.9E-06 28.7 4.9 31 305-335 1-34 (43)
413 PF10313 DUF2415: Uncharacteri 94.5 0.23 4.9E-06 28.3 5.3 31 211-241 1-34 (43)
414 COG3391 Uncharacterized conser 94.4 3.9 8.4E-05 37.5 23.0 122 212-339 117-244 (381)
415 PF15390 DUF4613: Domain of un 94.4 0.89 1.9E-05 42.5 11.7 119 209-335 55-187 (671)
416 PF14761 HPS3_N: Hermansky-Pud 94.4 2.3 5E-05 34.5 15.6 156 130-333 20-213 (215)
417 COG3490 Uncharacterized protei 94.3 2.9 6.3E-05 35.4 13.6 49 217-266 120-174 (366)
418 COG3823 Glutamine cyclotransfe 94.1 2.5 5.4E-05 34.0 14.3 178 64-273 35-248 (262)
419 PF12768 Rax2: Cortical protei 94.1 2.9 6.3E-05 36.1 13.8 139 275-439 15-169 (281)
420 PF10647 Gmad1: Lipoprotein Lp 94.0 3.4 7.4E-05 35.3 15.2 145 255-420 25-178 (253)
421 TIGR03074 PQQ_membr_DH membran 93.9 7.9 0.00017 38.9 18.6 123 222-344 194-354 (764)
422 COG5276 Uncharacterized conser 93.7 3.9 8.5E-05 34.9 27.5 281 75-449 86-368 (370)
423 PF07569 Hira: TUP1-like enhan 93.7 0.41 8.8E-06 39.7 7.8 81 76-157 13-97 (219)
424 KOG4499 Ca2+-binding protein R 93.2 4 8.7E-05 33.5 12.3 47 215-262 216-262 (310)
425 PRK13684 Ycf48-like protein; P 93.1 6.3 0.00014 35.3 26.6 158 252-448 171-329 (334)
426 KOG4460 Nuclear pore complex, 92.6 3.1 6.8E-05 38.4 11.9 76 212-287 105-201 (741)
427 KOG2377 Uncharacterized conser 92.4 2.2 4.7E-05 38.6 10.5 101 303-420 65-166 (657)
428 PF14655 RAB3GAP2_N: Rab3 GTPa 92.3 2.4 5.3E-05 38.8 11.2 82 206-287 303-401 (415)
429 KOG1900 Nuclear pore complex, 92.1 1.9 4E-05 44.4 11.0 100 230-333 97-204 (1311)
430 PF14727 PHTB1_N: PTHB1 N-term 92.1 9.6 0.00021 35.1 29.2 157 85-284 37-204 (418)
431 PF14761 HPS3_N: Hermansky-Pud 92.1 5.6 0.00012 32.4 13.2 154 223-386 29-213 (215)
432 PF07569 Hira: TUP1-like enhan 91.9 1.6 3.4E-05 36.2 9.0 80 254-338 13-99 (219)
433 PF02897 Peptidase_S9_N: Proly 91.9 11 0.00023 35.1 24.2 158 215-387 174-357 (414)
434 KOG2377 Uncharacterized conser 91.2 11 0.00023 34.5 13.4 105 209-323 65-172 (657)
435 PF05694 SBP56: 56kDa selenium 91.0 12 0.00027 34.2 16.7 193 221-450 86-342 (461)
436 PF14870 PSII_BNR: Photosynthe 90.8 11 0.00023 33.1 33.5 157 209-384 143-301 (302)
437 KOG1898 Splicing factor 3b, su 90.6 22 0.00047 36.4 28.1 173 234-446 855-1044(1205)
438 KOG1983 Tomosyn and related SN 90.6 23 0.00051 37.0 17.3 26 313-338 243-268 (993)
439 KOG1983 Tomosyn and related SN 90.3 3.3 7.1E-05 42.9 11.0 36 210-245 35-70 (993)
440 COG5167 VID27 Protein involved 90.2 4.9 0.00011 37.1 10.6 125 269-421 483-617 (776)
441 KOG1896 mRNA cleavage and poly 90.1 26 0.00056 36.4 23.5 184 231-448 1003-1211(1366)
442 TIGR03032 conserved hypothetic 89.9 12 0.00027 32.5 21.8 86 315-420 212-317 (335)
443 PRK10115 protease 2; Provision 89.8 23 0.0005 35.5 22.5 114 212-334 128-255 (686)
444 COG3204 Uncharacterized protei 89.6 12 0.00027 32.0 16.9 169 73-285 83-264 (316)
445 COG5167 VID27 Protein involved 89.6 14 0.00031 34.3 13.0 61 265-334 572-632 (776)
446 TIGR03606 non_repeat_PQQ dehyd 89.0 13 0.00029 34.6 12.9 57 209-265 28-90 (454)
447 TIGR02604 Piru_Ver_Nterm putat 88.6 19 0.00041 32.8 13.8 108 212-323 15-142 (367)
448 PF11715 Nup160: Nucleoporin N 88.4 5 0.00011 38.9 10.6 37 305-341 215-255 (547)
449 PF08801 Nucleoporin_N: Nup133 88.4 22 0.00047 33.2 15.6 29 360-388 190-220 (422)
450 PF07995 GSDH: Glucose / Sorbo 88.4 8.4 0.00018 34.5 11.2 53 306-369 3-58 (331)
451 PF10168 Nup88: Nuclear pore c 88.3 28 0.00061 34.9 15.4 83 305-389 85-181 (717)
452 KOG1896 mRNA cleavage and poly 88.2 32 0.00069 35.9 15.4 165 223-409 1047-1235(1366)
453 PF07995 GSDH: Glucose / Sorbo 88.1 19 0.00041 32.2 25.2 69 360-445 253-330 (331)
454 PF14781 BBS2_N: Ciliary BBSom 88.1 9.1 0.0002 28.5 13.6 109 216-337 4-128 (136)
455 PF12341 DUF3639: Protein of u 87.7 2 4.3E-05 21.7 3.8 26 76-101 2-27 (27)
456 KOG1900 Nuclear pore complex, 87.4 24 0.00053 37.0 14.4 74 210-287 178-275 (1311)
457 KOG1916 Nuclear protein, conta 87.2 0.3 6.6E-06 47.6 1.4 193 231-448 110-321 (1283)
458 KOG2247 WD40 repeat-containing 87.2 0.07 1.5E-06 48.1 -2.5 135 84-278 45-182 (615)
459 PLN00033 photosystem II stabil 86.1 28 0.00061 32.0 16.4 144 127-331 238-396 (398)
460 PF02333 Phytase: Phytase; In 85.5 28 0.00061 31.6 19.0 118 212-335 157-291 (381)
461 PRK13684 Ycf48-like protein; P 85.2 28 0.00061 31.2 19.6 113 211-333 215-330 (334)
462 PLN02153 epithiospecifier prot 84.9 29 0.00063 31.2 19.7 65 221-287 32-112 (341)
463 PLN02153 epithiospecifier prot 84.7 30 0.00064 31.2 22.6 65 221-287 85-170 (341)
464 KOG4659 Uncharacterized conser 84.3 60 0.0013 34.4 18.3 43 61-103 333-384 (1899)
465 PF10214 Rrn6: RNA polymerase 84.0 53 0.0012 33.5 17.1 240 6-333 73-328 (765)
466 KOG2063 Vacuolar assembly/sort 83.8 41 0.00089 34.3 13.9 79 80-159 21-100 (877)
467 TIGR03606 non_repeat_PQQ dehyd 83.5 39 0.00084 31.7 12.9 60 305-371 30-90 (454)
468 COG3823 Glutamine cyclotransfe 83.4 23 0.00049 28.8 13.6 103 221-335 55-159 (262)
469 TIGR02276 beta_rpt_yvtn 40-res 83.3 6.1 0.00013 22.1 5.9 30 220-249 1-31 (42)
470 PF10647 Gmad1: Lipoprotein Lp 82.9 29 0.00063 29.6 17.7 145 212-370 25-176 (253)
471 PF14781 BBS2_N: Ciliary BBSom 82.8 17 0.00038 27.1 11.9 74 209-285 46-126 (136)
472 PF02333 Phytase: Phytase; In 82.1 40 0.00086 30.7 24.1 202 220-449 66-289 (381)
473 KOG2006 WD40 repeat protein [G 81.7 39 0.00085 34.5 12.7 75 76-157 151-227 (1023)
474 smart00036 CNH Domain found in 81.5 37 0.0008 29.9 26.9 59 84-157 12-75 (302)
475 PF12657 TFIIIC_delta: Transcr 81.1 14 0.0003 29.4 8.2 33 409-448 87-119 (173)
476 TIGR03548 mutarot_permut cycli 81.0 40 0.00087 30.0 18.6 63 315-388 123-195 (323)
477 PF12657 TFIIIC_delta: Transcr 80.8 16 0.00034 29.0 8.5 32 211-242 86-123 (173)
478 COG3292 Predicted periplasmic 80.2 56 0.0012 31.2 15.4 70 74-156 163-234 (671)
479 smart00564 PQQ beta-propeller 79.9 5.5 0.00012 20.9 4.0 23 317-339 7-29 (33)
480 TIGR03548 mutarot_permut cycli 79.9 44 0.00095 29.8 15.9 109 221-338 72-198 (323)
481 KOG3616 Selective LIM binding 79.5 63 0.0014 31.9 12.8 67 77-156 16-84 (1636)
482 TIGR03547 muta_rot_YjhT mutatr 78.9 49 0.0011 29.8 22.1 22 82-103 15-37 (346)
483 PF08801 Nucleoporin_N: Nup133 78.7 44 0.00095 31.2 12.1 31 305-335 190-220 (422)
484 PRK14131 N-acetylneuraminic ac 78.2 55 0.0012 30.0 20.4 24 81-104 35-59 (376)
485 PF03022 MRJP: Major royal jel 77.7 48 0.001 29.0 13.8 181 233-420 35-248 (287)
486 PF13570 PQQ_3: PQQ-like domai 77.0 9.4 0.0002 21.3 4.5 26 79-104 15-40 (40)
487 COG4590 ABC-type uncharacteriz 76.4 14 0.00031 33.7 7.5 163 209-389 219-388 (733)
488 PLN02193 nitrile-specifier pro 76.4 72 0.0016 30.3 19.8 150 221-389 175-353 (470)
489 PF11715 Nup160: Nucleoporin N 76.4 7 0.00015 37.9 6.3 37 212-248 216-256 (547)
490 PLN02193 nitrile-specifier pro 76.1 73 0.0016 30.3 23.9 111 221-338 228-355 (470)
491 TIGR02604 Piru_Ver_Nterm putat 76.0 48 0.001 30.3 11.2 107 305-420 14-136 (367)
492 PF14870 PSII_BNR: Photosynthe 75.7 56 0.0012 28.8 28.8 158 251-447 142-301 (302)
493 PF01436 NHL: NHL repeat; Int 75.6 8.8 0.00019 19.5 4.0 25 307-331 4-28 (28)
494 PF07676 PD40: WD40-like Beta 74.7 11 0.00023 20.8 4.4 31 405-447 6-38 (39)
495 PF14779 BBS1: Ciliary BBSome 74.5 41 0.00089 28.6 9.3 71 209-281 175-255 (257)
496 TIGR03547 muta_rot_YjhT mutatr 71.9 76 0.0016 28.6 17.5 23 265-287 63-96 (346)
497 PF10433 MMS1_N: Mono-function 71.8 98 0.0021 29.8 22.2 216 75-314 255-503 (504)
498 KOG3522 Predicted guanine nucl 70.8 15 0.00032 36.4 6.6 144 224-386 549-696 (925)
499 KOG3522 Predicted guanine nucl 69.4 44 0.00095 33.4 9.3 149 85-285 547-698 (925)
500 PF01011 PQQ: PQQ enzyme repea 67.5 17 0.00038 20.0 4.1 27 224-250 2-28 (38)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.9e-52 Score=341.43 Aligned_cols=316 Identities=25% Similarity=0.457 Sum_probs=274.7
Q ss_pred cCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEe
Q 041325 14 NKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGG 91 (450)
Q Consensus 14 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tg 91 (450)
+-+..|+|++..+.+++.++++++ +...+..+..+.+ ||..+|.|++| ||+.||+|
T Consensus 118 Vl~~~fsp~g~~l~tGsGD~TvR~--------------------WD~~TeTp~~t~K--gH~~WVlcvawsPDgk~iASG 175 (480)
T KOG0271|consen 118 VLSVQFSPTGSRLVTGSGDTTVRL--------------------WDLDTETPLFTCK--GHKNWVLCVAWSPDGKKIASG 175 (480)
T ss_pred EEEEEecCCCceEEecCCCceEEe--------------------eccCCCCcceeec--CCccEEEEEEECCCcchhhcc
Confidence 345567777777777777776665 4444556777788 99999999999 99999999
Q ss_pred eCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-------EEEEeCCCeEEEEEcCCCceeEEec
Q 041325 92 SSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-------LFSAHQDHKIRVWKIDNNTSAYYST 164 (450)
Q Consensus 92 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-------l~s~~~dg~i~iw~~~~~~~~~~~~ 164 (450)
+.||+|++||..+++..-. .+.+|...|++|+|.|-. |++++.||.|+|||+..+
T Consensus 176 ~~dg~I~lwdpktg~~~g~-----------~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~------- 237 (480)
T KOG0271|consen 176 SKDGSIRLWDPKTGQQIGR-----------ALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLG------- 237 (480)
T ss_pred ccCCeEEEecCCCCCcccc-----------cccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCc-------
Confidence 9999999999999886544 477999999999997533 999999999999999988
Q ss_pred cCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeE
Q 041325 165 SGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRC 244 (450)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 244 (450)
.++. .+.+|+.+|+|+.|..+| ++++|+.|++|++|+...|++
T Consensus 238 ---------~~~~---------------------------~lsgHT~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~ 280 (480)
T KOG0271|consen 238 ---------TCVR---------------------------TLSGHTASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKL 280 (480)
T ss_pred ---------eEEE---------------------------EeccCccceEEEEEcCCc-eEEecCCCceEEEEEccchhH
Confidence 3333 344899999999998765 899999999999999999999
Q ss_pred EEEeecccccceEEEEEe-----------ecC------------------------CcEEEEEcCCCcEEEEeCcchhhh
Q 041325 245 LESVKNAHDDAINAIVVS-----------KSN------------------------DGFVYTGSADTKIKVWKKLRAALQ 289 (450)
Q Consensus 245 ~~~~~~~~~~~v~~~~~~-----------~~~------------------------~~~l~~~~~dg~i~vwd~~~~~~~ 289 (450)
.+.++ +|...|+.++.+ |.+ ...+++|+.|.++.+|+....+
T Consensus 281 ~r~lk-GHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k-- 357 (480)
T KOG0271|consen 281 CRELK-GHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK-- 357 (480)
T ss_pred HHhhc-ccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc--
Confidence 99999 999999999887 111 1259999999999999975432
Q ss_pred ccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC
Q 041325 290 VNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS 369 (450)
Q Consensus 290 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 369 (450)
+++..+.+|..-|..+.|+||++++++++-|..|++||.++|+.+ ..+.+|-..|..++|+.
T Consensus 358 -----kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~l-------------asfRGHv~~VYqvawsa 419 (480)
T KOG0271|consen 358 -----KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFL-------------ASFRGHVAAVYQVAWSA 419 (480)
T ss_pred -----cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchh-------------hhhhhccceeEEEEecc
Confidence 478888999999999999999999999999999999999999866 78999999999999996
Q ss_pred C--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEE
Q 041325 370 N--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIW 447 (450)
Q Consensus 370 ~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw 447 (450)
+ +|++|+.|.++++|++++. +....+.+|...|.++.|+|||. .+++|+.|..+++|
T Consensus 420 DsRLlVS~SkDsTLKvw~V~tk--------Kl~~DLpGh~DEVf~vDwspDG~-------------rV~sggkdkv~~lw 478 (480)
T KOG0271|consen 420 DSRLLVSGSKDSTLKVWDVRTK--------KLKQDLPGHADEVFAVDWSPDGQ-------------RVASGGKDKVLRLW 478 (480)
T ss_pred CccEEEEcCCCceEEEEEeeee--------eecccCCCCCceEEEEEecCCCc-------------eeecCCCceEEEee
Confidence 6 9999999999999999984 78888999999999999999999 99999999999999
Q ss_pred E
Q 041325 448 Q 448 (450)
Q Consensus 448 ~ 448 (450)
.
T Consensus 479 ~ 479 (480)
T KOG0271|consen 479 R 479 (480)
T ss_pred c
Confidence 5
No 2
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.8e-51 Score=331.42 Aligned_cols=288 Identities=27% Similarity=0.470 Sum_probs=259.2
Q ss_pred ceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-
Q 041325 63 HQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK- 139 (450)
Q Consensus 63 ~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~- 139 (450)
.+|...+. ||.++|.|++| +|..|+||+.|.++|+||+.+..+... ..+|...|.|++|+||+
T Consensus 105 trCssS~~--GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t------------~KgH~~WVlcvawsPDgk 170 (480)
T KOG0271|consen 105 TRCSSSIA--GHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFT------------CKGHKNWVLCVAWSPDGK 170 (480)
T ss_pred ceeccccC--CCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCccee------------ecCCccEEEEEEECCCcc
Confidence 35667777 99999999999 899999999999999999999887766 78999999999999999
Q ss_pred -EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEE
Q 041325 140 -LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALAL 218 (450)
Q Consensus 140 -l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 218 (450)
|++|+.||+|++||..++++ ....+.+|...|++++|
T Consensus 171 ~iASG~~dg~I~lwdpktg~~------------------------------------------~g~~l~gH~K~It~Law 208 (480)
T KOG0271|consen 171 KIASGSKDGSIRLWDPKTGQQ------------------------------------------IGRALRGHKKWITALAW 208 (480)
T ss_pred hhhccccCCeEEEecCCCCCc------------------------------------------ccccccCcccceeEEee
Confidence 99999999999999988842 22345589999999999
Q ss_pred cc-----CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc
Q 041325 219 SS-----DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 219 ~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 293 (450)
.| ..++|++++.||.|+|||+..++++..+. +|..+|+|+.|- +++++++|+.|++|++|+...+.
T Consensus 209 ep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~ls-gHT~~VTCvrwG--G~gliySgS~DrtIkvw~a~dG~------ 279 (480)
T KOG0271|consen 209 EPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLS-GHTASVTCVRWG--GEGLIYSGSQDRTIKVWRALDGK------ 279 (480)
T ss_pred cccccCCCccceecccCCCCEEEEEccCceEEEEec-cCccceEEEEEc--CCceEEecCCCceEEEEEccchh------
Confidence 76 56799999999999999999999999998 999999999998 78899999999999999997777
Q ss_pred chhhhhHhhcccceEEEEEc-----------CCC-------------------------CEEEEeeCCCcEEEEEcCCCc
Q 041325 294 HSLVQTLEKHKSAVTALALS-----------TDG-------------------------TVLYSGACDRSILVWERDQGN 337 (450)
Q Consensus 294 ~~~~~~~~~~~~~i~~l~~~-----------~~~-------------------------~~l~~g~~dg~i~vwd~~~~~ 337 (450)
+...+.+|...|+.++.+ |.+ ..|++|+.|.++.+|+....+
T Consensus 280 --~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~k 357 (480)
T KOG0271|consen 280 --LCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSK 357 (480)
T ss_pred --HHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccc
Confidence 899999999999999887 223 359999999999999976543
Q ss_pred eeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEE
Q 041325 338 YIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTA 415 (450)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 415 (450)
.+...+.+|..-|+.+.|+|+ ++|+++.|..|++||-++| +.+..+.+|-.+|..++|
T Consensus 358 ------------kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG--------k~lasfRGHv~~VYqvaw 417 (480)
T KOG0271|consen 358 ------------KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG--------KFLASFRGHVAAVYQVAW 417 (480)
T ss_pred ------------cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc--------chhhhhhhccceeEEEEe
Confidence 234688999999999999976 9999999999999999986 789999999999999999
Q ss_pred EecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 416 VVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+.|.+ +|++||.|.++++|++|
T Consensus 418 saDsR-------------LlVS~SkDsTLKvw~V~ 439 (480)
T KOG0271|consen 418 SADSR-------------LLVSGSKDSTLKVWDVR 439 (480)
T ss_pred ccCcc-------------EEEEcCCCceEEEEEee
Confidence 99999 99999999999999986
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.2e-49 Score=328.98 Aligned_cols=277 Identities=24% Similarity=0.412 Sum_probs=253.7
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC----eEEEEeCC
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD----KLFSAHQD 146 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~l~s~~~d 146 (450)
|.+.+|..+.| |++.|+|||.+|.++||+......+.. +.+|...|.++.|+|. .++||+.|
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~------------l~gH~~~v~~~~fhP~~~~~~lat~s~D 240 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQT------------LRGHTSRVGAAVFHPVDSDLNLATASAD 240 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEE------------EeccccceeeEEEccCCCccceeeeccC
Confidence 77889999999 899999999999999999988865555 8899999999999987 29999999
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLY 226 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 226 (450)
|++++|++++. . +...+.+|...|..++|+|+|++|+
T Consensus 241 gtvklw~~~~e----------------~---------------------------~l~~l~gH~~RVs~VafHPsG~~L~ 277 (459)
T KOG0272|consen 241 GTVKLWKLSQE----------------T---------------------------PLQDLEGHLARVSRVAFHPSGKFLG 277 (459)
T ss_pred CceeeeccCCC----------------c---------------------------chhhhhcchhhheeeeecCCCceee
Confidence 99999999987 2 2334458999999999999999999
Q ss_pred EEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccc
Q 041325 227 STSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSA 306 (450)
Q Consensus 227 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 306 (450)
+++.|.+-++||++++..+.... +|...|.+++|++++. ++++|+.|..-+|||++++. .+..+.+|..+
T Consensus 278 TasfD~tWRlWD~~tk~ElL~QE-GHs~~v~~iaf~~DGS-L~~tGGlD~~~RvWDlRtgr--------~im~L~gH~k~ 347 (459)
T KOG0272|consen 278 TASFDSTWRLWDLETKSELLLQE-GHSKGVFSIAFQPDGS-LAATGGLDSLGRVWDLRTGR--------CIMFLAGHIKE 347 (459)
T ss_pred ecccccchhhcccccchhhHhhc-ccccccceeEecCCCc-eeeccCccchhheeecccCc--------EEEEecccccc
Confidence 99999999999999988777666 9999999999999555 99999999999999999988 78889999999
Q ss_pred eEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC---CeEEEEeCCCeEEE
Q 041325 307 VTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS---NLLFSGSSDNTIRI 383 (450)
Q Consensus 307 i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~i 383 (450)
|.+++|+|+|..|++|+.|++++|||++..+.+ ..+.+|..-|+.+.|.+ .+|+|++.|++++|
T Consensus 348 I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~l-------------y~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~ki 414 (459)
T KOG0272|consen 348 ILSVAFSPNGYHLATGSSDNTCKVWDLRMRSEL-------------YTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKI 414 (459)
T ss_pred eeeEeECCCceEEeecCCCCcEEEeeecccccc-------------eecccccchhhheEecccCCeEEEEcccCcceee
Confidence 999999999999999999999999999987644 68899999999999984 49999999999999
Q ss_pred eeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 384 WRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 384 wd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
|...+ +.++..+.||.+.|.++..+++++ +++|++.|.+|++|.
T Consensus 415 Ws~~~--------~~~~ksLaGHe~kV~s~Dis~d~~-------------~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 415 WSTRT--------WSPLKSLAGHEGKVISLDISPDSQ-------------AIATSSFDRTIKLWR 458 (459)
T ss_pred ecCCC--------cccchhhcCCccceEEEEeccCCc-------------eEEEeccCceeeecc
Confidence 99776 689999999999999999999999 999999999999995
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=4.4e-44 Score=282.56 Aligned_cols=292 Identities=20% Similarity=0.317 Sum_probs=253.8
Q ss_pred eeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--
Q 041325 64 QCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 139 (450)
+..++|+ ||.+.|.++.| |.++|++++.||.+.|||.-+...+.. +.-....|..++|+|.+
T Consensus 46 ~~rr~Lk--GH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~ha------------ipl~s~WVMtCA~sPSg~~ 111 (343)
T KOG0286|consen 46 RTRRTLK--GHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHA------------IPLPSSWVMTCAYSPSGNF 111 (343)
T ss_pred eeEEEec--ccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeE------------EecCceeEEEEEECCCCCe
Confidence 3447777 99999999999 899999999999999999888775555 44566799999999877
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS 219 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (450)
+++|+.|+...||++...... . .......+.+|.+.+.|+.|-
T Consensus 112 VAcGGLdN~Csiy~ls~~d~~----------------g---------------------~~~v~r~l~gHtgylScC~f~ 154 (343)
T KOG0286|consen 112 VACGGLDNKCSIYPLSTRDAE----------------G---------------------NVRVSRELAGHTGYLSCCRFL 154 (343)
T ss_pred EEecCcCceeEEEeccccccc----------------c---------------------cceeeeeecCccceeEEEEEc
Confidence 899999999999999865210 0 002233566899999999999
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhh
Q 041325 220 SDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQT 299 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 299 (450)
+|+ .|++++.|.+..+||+++++.+..+. +|.+.|.++.+.|...+.+++|+-|+..++||++.+. ..+.
T Consensus 155 dD~-~ilT~SGD~TCalWDie~g~~~~~f~-GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~--------c~qt 224 (343)
T KOG0286|consen 155 DDN-HILTGSGDMTCALWDIETGQQTQVFH-GHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQ--------CVQT 224 (343)
T ss_pred CCC-ceEecCCCceEEEEEcccceEEEEec-CCcccEEEEecCCCCCCeEEecccccceeeeeccCcc--------eeEe
Confidence 865 58899999999999999999999999 9999999999999777799999999999999998877 8999
Q ss_pred HhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeC
Q 041325 300 LEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSS 377 (450)
Q Consensus 300 ~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~ 377 (450)
|.+|++.|++++|.|+|.-+++|+.|++.++||++..+.+.. .....-..+|++++|+ |++|++|..
T Consensus 225 F~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~-----------ys~~~~~~gitSv~FS~SGRlLfagy~ 293 (343)
T KOG0286|consen 225 FEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAV-----------YSHDSIICGITSVAFSKSGRLLFAGYD 293 (343)
T ss_pred ecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEee-----------eccCcccCCceeEEEcccccEEEeeec
Confidence 999999999999999999999999999999999998776532 2233344678999997 889999999
Q ss_pred CCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 378 DNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 378 dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
|..+.+||.-.+ +.+..+.+|...|+++..+|||. .++|||.|.++|||.
T Consensus 294 d~~c~vWDtlk~--------e~vg~L~GHeNRvScl~~s~DG~-------------av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 294 DFTCNVWDTLKG--------ERVGVLAGHENRVSCLGVSPDGM-------------AVATGSWDSTLRIWA 343 (343)
T ss_pred CCceeEeecccc--------ceEEEeeccCCeeEEEEECCCCc-------------EEEecchhHheeecC
Confidence 999999998764 77888999999999999999999 999999999999994
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.9e-43 Score=274.10 Aligned_cols=300 Identities=22% Similarity=0.376 Sum_probs=242.5
Q ss_pred eeeeEEeecCCCcceEEEEE---eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-
Q 041325 64 QCSATLKVKGNSSYIPSLAI---AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~---d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~- 139 (450)
.+.-+|+ +|.+.|+.++. +.+.+++++.|..+.+|++...... -......+.||...|..+..++++
T Consensus 6 ~l~~tl~--gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~-------~G~~~r~~~GHsH~v~dv~~s~dg~ 76 (315)
T KOG0279|consen 6 VLRGTLE--GHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIK-------YGVPVRRLTGHSHFVSDVVLSSDGN 76 (315)
T ss_pred eeeeeec--CCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccc-------cCceeeeeeccceEecceEEccCCc
Confidence 4555677 99999999999 5889999999999999998765211 111223488999999999999777
Q ss_pred -EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEE
Q 041325 140 -LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALAL 218 (450)
Q Consensus 140 -l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 218 (450)
.++++.|+++++||+.+++ ....+.+|...|.+++|
T Consensus 77 ~alS~swD~~lrlWDl~~g~-------------------------------------------~t~~f~GH~~dVlsva~ 113 (315)
T KOG0279|consen 77 FALSASWDGTLRLWDLATGE-------------------------------------------STRRFVGHTKDVLSVAF 113 (315)
T ss_pred eEEeccccceEEEEEecCCc-------------------------------------------EEEEEEecCCceEEEEe
Confidence 8999999999999999983 34456689999999999
Q ss_pred ccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecC-CcEEEEEcCCCcEEEEeCcchhhhccccchhh
Q 041325 219 SSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSN-DGFVYTGSADTKIKVWKKLRAALQVNKKHSLV 297 (450)
Q Consensus 219 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 297 (450)
++|.+.+++|+.|.+|++||+............+.+-|.|+.|+|.. +.+|++++.|+.|++||+++.+ ..
T Consensus 114 s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~--------l~ 185 (315)
T KOG0279|consen 114 STDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ--------LR 185 (315)
T ss_pred cCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc--------hh
Confidence 99999999999999999999975444443332337899999999975 4579999999999999997766 78
Q ss_pred hhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-eEEEEe
Q 041325 298 QTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFSGS 376 (450)
Q Consensus 298 ~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~ 376 (450)
..+.+|.+.++.++++|||.++++|+.||.+.+||++.++.+ ....|...|.+++|+|+ +.++..
T Consensus 186 ~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~l--------------ysl~a~~~v~sl~fspnrywL~~a 251 (315)
T KOG0279|consen 186 TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNL--------------YSLEAFDIVNSLCFSPNRYWLCAA 251 (315)
T ss_pred hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCcee--------------EeccCCCeEeeEEecCCceeEeec
Confidence 889999999999999999999999999999999999998865 23457789999999988 555666
Q ss_pred CCCeEEEeeCCCCccccCCCceeEEE-ecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 377 SDNTIRIWRRSSSVTDHQKGYSCLAV-LEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 377 ~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
.+..|+|||+.++........+.... .+...-...+++|+++|. .|++|-.|+.|++|.+.
T Consensus 252 t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~-------------tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 252 TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQ-------------TLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCc-------------EEEeeecCCcEEEEEee
Confidence 67779999999863322211111111 122233467889999999 99999999999999974
No 6
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=1.2e-41 Score=262.79 Aligned_cols=276 Identities=21% Similarity=0.393 Sum_probs=235.8
Q ss_pred CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEEEcCCCceeEEe
Q 041325 85 GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVWKIDNNTSAYYS 163 (450)
Q Consensus 85 ~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~~~~~~~~~~~ 163 (450)
.-+|++++.|.+||+|...+|.+... +....+.|+.|...|++ .++++....||+||+++...
T Consensus 10 ~viLvsA~YDhTIRfWqa~tG~C~rT------------iqh~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np---- 73 (311)
T KOG0315|consen 10 PVILVSAGYDHTIRFWQALTGICSRT------------IQHPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNP---- 73 (311)
T ss_pred ceEEEeccCcceeeeeehhcCeEEEE------------EecCccceeeEEEcCCcchhhhccCCeeEEEEccCCCC----
Confidence 45799999999999999999998887 44556789999999988 44444457899999998832
Q ss_pred ccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCe
Q 041325 164 TSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFR 243 (450)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 243 (450)
.+...+.+|.+.|+++.|..+|+++++|++||+++|||++...
T Consensus 74 -------------------------------------~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~ 116 (311)
T KOG0315|consen 74 -------------------------------------NPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS 116 (311)
T ss_pred -------------------------------------CceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc
Confidence 3556677899999999999999999999999999999999988
Q ss_pred EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEee
Q 041325 244 CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA 323 (450)
Q Consensus 244 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~ 323 (450)
+.+.++ +..+|+++..+| +...|++|..+|.|++||+....+. ...+......|.++...|||.+++.+.
T Consensus 117 ~qR~~~--~~spVn~vvlhp-nQteLis~dqsg~irvWDl~~~~c~-------~~liPe~~~~i~sl~v~~dgsml~a~n 186 (311)
T KOG0315|consen 117 CQRNYQ--HNSPVNTVVLHP-NQTELISGDQSGNIRVWDLGENSCT-------HELIPEDDTSIQSLTVMPDGSMLAAAN 186 (311)
T ss_pred cchhcc--CCCCcceEEecC-CcceEEeecCCCcEEEEEccCCccc-------cccCCCCCcceeeEEEcCCCcEEEEec
Confidence 888886 779999999999 5568999999999999999776421 111223447899999999999999999
Q ss_pred CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEE
Q 041325 324 CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLA 401 (450)
Q Consensus 324 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 401 (450)
..|..++|++-.... ...+.+...++.|.+-++.+.++++ +|+++|.|.+++||+.+.- ++...
T Consensus 187 nkG~cyvW~l~~~~~-------~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-------~kle~ 252 (311)
T KOG0315|consen 187 NKGNCYVWRLLNHQT-------ASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-------FKLEL 252 (311)
T ss_pred CCccEEEEEccCCCc-------cccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-------eeeEE
Confidence 999999999986432 3445677889999999999999865 9999999999999998862 46777
Q ss_pred EecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 402 VLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 402 ~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
.+++|...+...+|+.|+. ||+||+.|+.+++|+++
T Consensus 253 ~l~gh~rWvWdc~FS~dg~-------------YlvTassd~~~rlW~~~ 288 (311)
T KOG0315|consen 253 VLTGHQRWVWDCAFSADGE-------------YLVTASSDHTARLWDLS 288 (311)
T ss_pred EeecCCceEEeeeeccCcc-------------EEEecCCCCceeecccc
Confidence 8899999999999999999 99999999999999974
No 7
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.8e-42 Score=280.85 Aligned_cols=294 Identities=22% Similarity=0.397 Sum_probs=256.1
Q ss_pred CCCCCccceeeeEEeecCCCcceEEEEEe--CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEE
Q 041325 56 QAPAASEHQCSATLKVKGNSSYIPSLAIA--GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSL 133 (450)
Q Consensus 56 ~~~~~~~~~~~~~l~~~~h~~~v~~~~~d--~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 133 (450)
.+-+..++++.+.++ ||.++|.|+++| ..+|+||+.|++|+|||+.++++... +.||...|..+
T Consensus 134 rPeWHapwKl~rVi~--gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lklt------------ltGhi~~vr~v 199 (460)
T KOG0285|consen 134 RPEWHAPWKLYRVIS--GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLT------------LTGHIETVRGV 199 (460)
T ss_pred CccccCcceehhhhh--hccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEe------------ecchhheeeee
Confidence 345667788999999 999999999995 78999999999999999999998776 88999999999
Q ss_pred EEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCC
Q 041325 134 VVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVD 211 (450)
Q Consensus 134 ~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (450)
++++.. +++++.|+.|+.||++..+ ....+.+|-.
T Consensus 200 avS~rHpYlFs~gedk~VKCwDLe~nk-------------------------------------------vIR~YhGHlS 236 (460)
T KOG0285|consen 200 AVSKRHPYLFSAGEDKQVKCWDLEYNK-------------------------------------------VIRHYHGHLS 236 (460)
T ss_pred eecccCceEEEecCCCeeEEEechhhh-------------------------------------------hHHHhccccc
Confidence 999766 9999999999999999872 3334558999
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN 291 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 291 (450)
.|.|++.+|.-+.|++|+.|.++++||+++...+..+. +|..+|.++.+.|.+. .+++|+.|++|++||++.++
T Consensus 237 ~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~-GH~~~V~~V~~~~~dp-qvit~S~D~tvrlWDl~agk---- 310 (460)
T KOG0285|consen 237 GVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLS-GHTNPVASVMCQPTDP-QVITGSHDSTVRLWDLRAGK---- 310 (460)
T ss_pred eeEEEeccccceeEEecCCcceEEEeeecccceEEEec-CCCCcceeEEeecCCC-ceEEecCCceEEEeeeccCc----
Confidence 99999999999999999999999999999999999998 9999999999998544 89999999999999998887
Q ss_pred ccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-
Q 041325 292 KKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN- 370 (450)
Q Consensus 292 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 370 (450)
....+..|+..+.+++.+|....+++++.|. |+-|++..+..+ ..+.+|...|++++.+.+
T Consensus 311 ----t~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~-------------~nlsgh~~iintl~~nsD~ 372 (460)
T KOG0285|consen 311 ----TMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFL-------------QNLSGHNAIINTLSVNSDG 372 (460)
T ss_pred ----eeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchh-------------hccccccceeeeeeeccCc
Confidence 6677778999999999999999999998775 999999988755 668999999999999854
Q ss_pred eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecC-----CCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEE
Q 041325 371 LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG-----HRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIK 445 (450)
Q Consensus 371 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-----h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~ 445 (450)
++++|+.+|.+.+||.+++.. ++......+ ....|.+.+|...+. .|+||..|.+|+
T Consensus 373 v~~~G~dng~~~fwdwksg~n-----yQ~~~t~vqpGSl~sEagI~as~fDktg~-------------rlit~eadKtIk 434 (460)
T KOG0285|consen 373 VLVSGGDNGSIMFWDWKSGHN-----YQRGQTIVQPGSLESEAGIFASCFDKTGS-------------RLITGEADKTIK 434 (460)
T ss_pred eEEEcCCceEEEEEecCcCcc-----cccccccccCCccccccceeEEeecccCc-------------eEEeccCCcceE
Confidence 999999999999999998632 222221111 234688888888888 899999999999
Q ss_pred EEE
Q 041325 446 IWQ 448 (450)
Q Consensus 446 iw~ 448 (450)
+|+
T Consensus 435 ~~k 437 (460)
T KOG0285|consen 435 MYK 437 (460)
T ss_pred EEe
Confidence 996
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.3e-43 Score=289.34 Aligned_cols=253 Identities=22% Similarity=0.355 Sum_probs=227.9
Q ss_pred cccCCCCCccceeeeEEeecCCCcceEEEEE----eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCC
Q 041325 53 FRKQAPAASEHQCSATLKVKGNSSYIPSLAI----AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGD 128 (450)
Q Consensus 53 ~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~----d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 128 (450)
...+.++.+..+.+++|. ||...|.++.| ++.-||||+.||++++|++++..++.. +.+|..
T Consensus 197 G~~kvW~~~~~~~~~~l~--gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~------------l~gH~~ 262 (459)
T KOG0272|consen 197 GLVKVWSVPQCNLLQTLR--GHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQD------------LEGHLA 262 (459)
T ss_pred CceeEeecCCcceeEEEe--ccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhh------------hhcchh
Confidence 445667777778899999 99999999999 367999999999999999998765555 789999
Q ss_pred ceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeee
Q 041325 129 AVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTW 206 (450)
Q Consensus 129 ~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (450)
.|..++|+|++ |+|++.|.+-++||++++. .....
T Consensus 263 RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~-------------------------------------------ElL~Q 299 (459)
T KOG0272|consen 263 RVSRVAFHPSGKFLGTASFDSTWRLWDLETKS-------------------------------------------ELLLQ 299 (459)
T ss_pred hheeeeecCCCceeeecccccchhhcccccch-------------------------------------------hhHhh
Confidence 99999999888 9999999999999999883 22233
Q ss_pred ecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcch
Q 041325 207 VHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 207 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 286 (450)
.+|...|.+++|.+||.++++|+.|..-+|||+++++++..+. +|..+|.+|+|+| ++..+++|+.|++++|||++..
T Consensus 300 EGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~-gH~k~I~~V~fsP-NGy~lATgs~Dnt~kVWDLR~r 377 (459)
T KOG0272|consen 300 EGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLA-GHIKEILSVAFSP-NGYHLATGSSDNTCKVWDLRMR 377 (459)
T ss_pred cccccccceeEecCCCceeeccCccchhheeecccCcEEEEec-ccccceeeEeECC-CceEEeecCCCCcEEEeeeccc
Confidence 4799999999999999999999999999999999999999998 8999999999998 5558999999999999999877
Q ss_pred hhhccccchhhhhHhhcccceEEEEEcC-CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEE
Q 041325 287 ALQVNKKHSLVQTLEKHKSAVTALALST-DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL 365 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 365 (450)
. .+..+.+|.+-|+.+.|+| .|.+|++++.|++++||..++..++ ..+.+|.+.|.++
T Consensus 378 ~--------~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~-------------ksLaGHe~kV~s~ 436 (459)
T KOG0272|consen 378 S--------ELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPL-------------KSLAGHEGKVISL 436 (459)
T ss_pred c--------cceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccc-------------hhhcCCccceEEE
Confidence 6 6888999999999999999 7899999999999999999987755 8999999999999
Q ss_pred EEeCC--eEEEEeCCCeEEEee
Q 041325 366 AVVSN--LLFSGSSDNTIRIWR 385 (450)
Q Consensus 366 ~~~~~--~l~s~~~dg~v~iwd 385 (450)
..+++ .+++++.|+++++|.
T Consensus 437 Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 437 DISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred EeccCCceEEEeccCceeeecc
Confidence 98854 899999999999995
No 9
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.4e-40 Score=260.14 Aligned_cols=297 Identities=24% Similarity=0.408 Sum_probs=242.7
Q ss_pred eeeeEEeecCCCcceEEEEEe---CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-
Q 041325 64 QCSATLKVKGNSSYIPSLAIA---GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~d---~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~- 139 (450)
..+++++ +|.+.|..++|+ |..||||+.|..||+|+...+.-..... +.-.+|+..|.+++|+|.+
T Consensus 5 ~~~~~~~--gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~--------vld~~hkrsVRsvAwsp~g~ 74 (312)
T KOG0645|consen 5 ILEQKLS--GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKT--------VLDDGHKRSVRSVAWSPHGR 74 (312)
T ss_pred eeEEeec--CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEE--------eccccchheeeeeeecCCCc
Confidence 3456666 999999999994 5599999999999999988533222211 1234899999999998766
Q ss_pred -EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEE
Q 041325 140 -LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALAL 218 (450)
Q Consensus 140 -l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 218 (450)
|++|+.|.++.||.-..++- +++.++ .+|...|.|++|
T Consensus 75 ~La~aSFD~t~~Iw~k~~~ef--------------ecv~~l---------------------------EGHEnEVK~Vaw 113 (312)
T KOG0645|consen 75 YLASASFDATVVIWKKEDGEF--------------ECVATL---------------------------EGHENEVKCVAW 113 (312)
T ss_pred EEEEeeccceEEEeecCCCce--------------eEEeee---------------------------eccccceeEEEE
Confidence 99999999999998776532 444443 489999999999
Q ss_pred ccCCCEEEEEeCCCcEEEEecCC---CeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccch
Q 041325 219 SSDGSLLYSTSWDRTFKIWRTSD---FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHS 295 (450)
Q Consensus 219 ~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 295 (450)
+++|++||+++.|..|-||.+.. .++...++ .|...|..+.|+|..+ +|++++.|++|++|+-.. . ..+.
T Consensus 114 s~sG~~LATCSRDKSVWiWe~deddEfec~aVL~-~HtqDVK~V~WHPt~d-lL~S~SYDnTIk~~~~~~-d----ddW~ 186 (312)
T KOG0645|consen 114 SASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ-EHTQDVKHVIWHPTED-LLFSCSYDNTIKVYRDED-D----DDWE 186 (312)
T ss_pred cCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeec-cccccccEEEEcCCcc-eeEEeccCCeEEEEeecC-C----CCee
Confidence 99999999999999999999874 45677777 8999999999999555 999999999999998753 2 4667
Q ss_pred hhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEE
Q 041325 296 LVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSG 375 (450)
Q Consensus 296 ~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~ 375 (450)
+.+++.+|...|.+++|++.|..|++++.|++++||-..+. ....|...+..++|....|+++
T Consensus 187 c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----------------~~~~~sr~~Y~v~W~~~~IaS~ 249 (312)
T KOG0645|consen 187 CVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----------------LSGMHSRALYDVPWDNGVIASG 249 (312)
T ss_pred EEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-----------------cchhcccceEeeeecccceEec
Confidence 89999999999999999999999999999999999986632 2345788999999997799999
Q ss_pred eCCCeEEEeeCCCCccccCCCceeEE-EecCCCcceEEEEEEec-CCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 376 SSDNTIRIWRRSSSVTDHQKGYSCLA-VLEGHRRPVKCLTAVVD-SDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 376 ~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~-~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+.|+.|++|.-.... ....++.+. .-..|...|++++|.|. .. +|++|++||.|++|.++
T Consensus 250 ggD~~i~lf~~s~~~--d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~-------------~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 250 GGDDAIRLFKESDSP--DEPSWNLLAKKEGAHEVDVNSVQWNPKVSN-------------RLASGGDDGIVNFWELE 311 (312)
T ss_pred cCCCEEEEEEecCCC--CCchHHHHHhhhcccccccceEEEcCCCCC-------------ceeecCCCceEEEEEec
Confidence 999999999876421 122233333 34679999999999995 34 89999999999999974
No 10
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.1e-41 Score=274.24 Aligned_cols=309 Identities=23% Similarity=0.397 Sum_probs=270.4
Q ss_pred CCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcc
Q 041325 42 PSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHA 119 (450)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~ 119 (450)
+..-...|+.+.+.+.-+.+.+.+.+.+. ||..+|+.+-| +-..+++++.|++|++||..++++...
T Consensus 77 ~el~~g~pt~~~~~~~~wipRp~l~~~l~--g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~--------- 145 (406)
T KOG0295|consen 77 DELIAGDPTGSKRTPALWIPRPNLVQKLA--GHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERS--------- 145 (406)
T ss_pred cccccCCCCcCccChhhcCCCCCchhhhh--ccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhh---------
Confidence 44445666666666666666667778888 99999999999 677888899999999999999998665
Q ss_pred eeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEE
Q 041325 120 NVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQ 197 (450)
Q Consensus 120 ~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (450)
+.||...|.+|+|...+ +++++.|=.+++||.++.. +++.
T Consensus 146 ---LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~---------------~c~k-------------------- 187 (406)
T KOG0295|consen 146 ---LRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFF---------------RCIK-------------------- 187 (406)
T ss_pred ---hhccccceeEEEEecCccEEEecCCccchhheeHHHHH---------------HHHH--------------------
Confidence 88999999999998555 9999999999999998641 2222
Q ss_pred EeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCc
Q 041325 198 VRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTK 277 (450)
Q Consensus 198 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 277 (450)
.+.+|...|.+++|-|.|+++++++.|.+|+.|++.++-++.++. +|...|..++.+.+ ..++++++.|.+
T Consensus 188 -------s~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~-~h~ewvr~v~v~~D-Gti~As~s~dqt 258 (406)
T KOG0295|consen 188 -------SLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFP-GHSEWVRMVRVNQD-GTIIASCSNDQT 258 (406)
T ss_pred -------HhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEecc-CchHhEEEEEecCC-eeEEEecCCCce
Confidence 233788899999999999999999999999999999999999999 89999999999853 337899999999
Q ss_pred EEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCC---------------CCEEEEeeCCCcEEEEEcCCCceeeeC
Q 041325 278 IKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTD---------------GTVLYSGACDRSILVWERDQGNYIVDG 342 (450)
Q Consensus 278 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~---------------~~~l~~g~~dg~i~vwd~~~~~~~~~~ 342 (450)
|++|-+.+++ +...+..|+.+|.+++|-|. ++++.+++.|++|++||+.++.++
T Consensus 259 l~vW~~~t~~--------~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL--- 327 (406)
T KOG0295|consen 259 LRVWVVATKQ--------CKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL--- 327 (406)
T ss_pred EEEEEeccch--------hhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE---
Confidence 9999997776 77888999999999999763 369999999999999999999877
Q ss_pred CCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 343 DDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
.++.+|...|..++|+ |+||+++.+|+++++||+++. +|...+..|..-|+++.|+.+..
T Consensus 328 ----------~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~--------~cmk~~~ah~hfvt~lDfh~~~p 389 (406)
T KOG0295|consen 328 ----------FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL--------QCMKTLEAHEHFVTSLDFHKTAP 389 (406)
T ss_pred ----------EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc--------eeeeccCCCcceeEEEecCCCCc
Confidence 6899999999999999 779999999999999999974 89999999999999999999998
Q ss_pred CCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 421 YSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 421 ~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+++||+-|.++++|+=|
T Consensus 390 -------------~VvTGsVdqt~KvwEcr 406 (406)
T KOG0295|consen 390 -------------YVVTGSVDQTVKVWECR 406 (406)
T ss_pred -------------eEEeccccceeeeeecC
Confidence 99999999999999743
No 11
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.1e-42 Score=281.33 Aligned_cols=286 Identities=24% Similarity=0.452 Sum_probs=246.6
Q ss_pred eeeEEeecC-CCcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEE
Q 041325 65 CSATLKVKG-NSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSA 143 (450)
Q Consensus 65 ~~~~l~~~~-h~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~ 143 (450)
.++++.... ....|.|+.+|+..+++|..|++|+|||.++..+... +.||++.|.|+.|...-+++|
T Consensus 186 ~~~rinc~Se~skgVYClQYDD~kiVSGlrDnTikiWD~n~~~c~~~------------L~GHtGSVLCLqyd~rviisG 253 (499)
T KOG0281|consen 186 LLQRINCRSENSKGVYCLQYDDEKIVSGLRDNTIKIWDKNSLECLKI------------LTGHTGSVLCLQYDERVIVSG 253 (499)
T ss_pred eeeeecCCcccCCceEEEEecchhhhcccccCceEEeccccHHHHHh------------hhcCCCcEEeeeccceEEEec
Confidence 344454322 3468999999999999999999999999999887776 889999999999998889999
Q ss_pred eCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCC
Q 041325 144 HQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGS 223 (450)
Q Consensus 144 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 223 (450)
+.|.+|++||++++ + +...+.+|...|..+.|+ ..
T Consensus 254 SSDsTvrvWDv~tg----------------e---------------------------~l~tlihHceaVLhlrf~--ng 288 (499)
T KOG0281|consen 254 SSDSTVRVWDVNTG----------------E---------------------------PLNTLIHHCEAVLHLRFS--NG 288 (499)
T ss_pred CCCceEEEEeccCC----------------c---------------------------hhhHHhhhcceeEEEEEe--CC
Confidence 99999999999999 2 333445799999999997 56
Q ss_pred EEEEEeCCCcEEEEecCCCeEE---EEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhH
Q 041325 224 LLYSTSWDRTFKIWRTSDFRCL---ESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTL 300 (450)
Q Consensus 224 ~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 300 (450)
++++++.|..|.+||+.....+ +.+. +|...|+.+.|. +.++++++.|.+|++|++.+.+ .++.+
T Consensus 289 ~mvtcSkDrsiaVWdm~sps~it~rrVLv-GHrAaVNvVdfd---~kyIVsASgDRTikvW~~st~e--------fvRtl 356 (499)
T KOG0281|consen 289 YMVTCSKDRSIAVWDMASPTDITLRRVLV-GHRAAVNVVDFD---DKYIVSASGDRTIKVWSTSTCE--------FVRTL 356 (499)
T ss_pred EEEEecCCceeEEEeccCchHHHHHHHHh-hhhhheeeeccc---cceEEEecCCceEEEEecccee--------eehhh
Confidence 8999999999999999875422 2233 899999999996 4499999999999999998777 89999
Q ss_pred hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCe
Q 041325 301 EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNT 380 (450)
Q Consensus 301 ~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~ 380 (450)
.+|+..|.|+.+ .++++++|+.|.+|++||+..|+++ ..+.+|+.-|.|+.|+...+++|+.||+
T Consensus 357 ~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cL-------------RvLeGHEeLvRciRFd~krIVSGaYDGk 421 (499)
T KOG0281|consen 357 NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACL-------------RVLEGHEELVRCIRFDNKRIVSGAYDGK 421 (499)
T ss_pred hcccccceehhc--cCeEEEecCCCceEEEEeccccHHH-------------HHHhchHHhhhheeecCceeeeccccce
Confidence 999999999998 6899999999999999999999866 8899999999999999999999999999
Q ss_pred EEEeeCCCCccccC-CCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 381 IRIWRRSSSVTDHQ-KGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 381 v~iwd~~~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
|++||+..+..... ...-|+..+..|++.|..+.|..- .+++++.|.+|.|||+
T Consensus 422 ikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD~f---------------qIvsssHddtILiWdF 476 (499)
T KOG0281|consen 422 IKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFDEF---------------QIISSSHDDTILIWDF 476 (499)
T ss_pred EEEEecccccCCcccccchHHHhhhhccceeEEEeecce---------------EEEeccCCCeEEEEEc
Confidence 99999998643321 223467778889999999998543 7999999999999996
No 12
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=9.2e-42 Score=281.24 Aligned_cols=277 Identities=23% Similarity=0.371 Sum_probs=239.8
Q ss_pred CCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeE
Q 041325 74 NSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKI 149 (450)
Q Consensus 74 h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i 149 (450)
-.-.|..+.| +|+.|++|+..|.+.+|+...-....+ +..|..+|.++.|+.+. +++|+.+|.|
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEti------------lQaHDs~Vr~m~ws~~g~wmiSgD~gG~i 162 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETI------------LQAHDSPVRTMKWSHNGTWMISGDKGGMI 162 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHH------------hhhhcccceeEEEccCCCEEEEcCCCceE
Confidence 3457888888 899999999999999999755443333 67999999999999766 9999999999
Q ss_pred EEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe
Q 041325 150 RVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS 229 (450)
Q Consensus 150 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 229 (450)
++|+..-... ......|...|++++|+|+...|++++
T Consensus 163 KyWqpnmnnV-------------------------------------------k~~~ahh~eaIRdlafSpnDskF~t~S 199 (464)
T KOG0284|consen 163 KYWQPNMNNV-------------------------------------------KIIQAHHAEAIRDLAFSPNDSKFLTCS 199 (464)
T ss_pred Eecccchhhh-------------------------------------------HHhhHhhhhhhheeccCCCCceeEEec
Confidence 9999875411 111124558999999999988999999
Q ss_pred CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEE
Q 041325 230 WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTA 309 (450)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 309 (450)
.||+|+|||....+....+. +|.-.|.+++|+| ..+++++++.|..|++||.+++. ++.++..|+..|..
T Consensus 200 dDg~ikiWdf~~~kee~vL~-GHgwdVksvdWHP-~kgLiasgskDnlVKlWDprSg~--------cl~tlh~HKntVl~ 269 (464)
T KOG0284|consen 200 DDGTIKIWDFRMPKEERVLR-GHGWDVKSVDWHP-TKGLIASGSKDNLVKLWDPRSGS--------CLATLHGHKNTVLA 269 (464)
T ss_pred CCCeEEEEeccCCchhheec-cCCCCcceeccCC-ccceeEEccCCceeEeecCCCcc--------hhhhhhhccceEEE
Confidence 99999999999888877786 9999999999999 56699999999999999998887 89999999999999
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe---CCeEEEEeCCCeEEEeeC
Q 041325 310 LALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV---SNLLFSGSSDNTIRIWRR 386 (450)
Q Consensus 310 l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~v~iwd~ 386 (450)
+.|+|++++|++++.|..++++|+++.+.+ ..+.+|...|+++.|+ ++++.+|+.||.|..|.+
T Consensus 270 ~~f~~n~N~Llt~skD~~~kv~DiR~mkEl-------------~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v 336 (464)
T KOG0284|consen 270 VKFNPNGNWLLTGSKDQSCKVFDIRTMKEL-------------FTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVV 336 (464)
T ss_pred EEEcCCCCeeEEccCCceEEEEehhHhHHH-------------HHhhcchhhheeeccccccccceeeccCCCceEEEec
Confidence 999999999999999999999999976644 7889999999999998 469999999999999998
Q ss_pred CCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 387 SSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
... ......-.+|...|++++|+|-|. +|++|+.|.++++|.
T Consensus 337 ~~~-------~p~~~i~~AHd~~iwsl~~hPlGh-------------il~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 337 GLE-------EPLGEIPPAHDGEIWSLAYHPLGH-------------ILATGSNDRTVRFWT 378 (464)
T ss_pred ccc-------ccccCCCcccccceeeeeccccce-------------eEeecCCCcceeeec
Confidence 732 122233467999999999999999 999999999999995
No 13
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.2e-39 Score=287.97 Aligned_cols=349 Identities=23% Similarity=0.414 Sum_probs=267.2
Q ss_pred cccCCCCCccceeeeEEeecC-CCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCc
Q 041325 53 FRKQAPAASEHQCSATLKVKG-NSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDA 129 (450)
Q Consensus 53 ~~~~~~~~~~~~~~~~l~~~~-h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 129 (450)
-....+..+++++++.++ + |.++|.-++| .+.+|++|+.||.|+|||+..+.+... +.||++.
T Consensus 84 ~llrv~~L~tgk~irswK--a~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th~------------fkG~gGv 149 (775)
T KOG0319|consen 84 QLLRVWSLPTGKLIRSWK--AIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTHS------------FKGHGGV 149 (775)
T ss_pred ceEEEEEcccchHhHhHh--hccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEEE------------ecCCCce
Confidence 334567888888889888 7 9999999999 489999999999999999999998877 8899999
Q ss_pred eEEEEEeCCe----EEEEeCCCeEEEEEcCCCce--------------eEEeccCc-------c------cccceeeeee
Q 041325 130 VKSLVVLGDK----LFSAHQDHKIRVWKIDNNTS--------------AYYSTSGK-------L------KNKYYERIAT 178 (450)
Q Consensus 130 v~~l~~~~~~----l~s~~~dg~i~iw~~~~~~~--------------~~~~~~~~-------~------~~~~~~~~~~ 178 (450)
|.++.|+|+. |++|+.|+++++||++.... ..+..... . .-..++...+
T Consensus 150 Vssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~ 229 (775)
T KOG0319|consen 150 VSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKT 229 (775)
T ss_pred EEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhhe
Confidence 9999999876 89999999999999985533 00000000 0 0001111111
Q ss_pred ccCCCcc---------------eeEeeecCc-------------------------------------------eEEEe-
Q 041325 179 LPTLNDR---------------FTKCFLANN-------------------------------------------YVQVR- 199 (450)
Q Consensus 179 ~~~~~~~---------------~~~~~~~~~-------------------------------------------~~~~~- 199 (450)
+|..+.. +.......+ .+.+.
T Consensus 230 lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d 309 (775)
T KOG0319|consen 230 LPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYD 309 (775)
T ss_pred echhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEE
Confidence 1111110 000000000 00000
Q ss_pred ------------------------------------------e---cceeeeecCCCceEEEEEccCCCEEEEEeCCCcE
Q 041325 200 ------------------------------------------R---HKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTF 234 (450)
Q Consensus 200 ------------------------------------------~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 234 (450)
. ..-..+.+|.+.|.+++...+|.+|++|+.|.++
T Consensus 310 ~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~sv 389 (775)
T KOG0319|consen 310 EDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSV 389 (775)
T ss_pred ccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEecCCceE
Confidence 0 0001256899999999977788999999999999
Q ss_pred EEEecCCCe----EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc-cccchhhhhHhhcccceEE
Q 041325 235 KIWRTSDFR----CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV-NKKHSLVQTLEKHKSAVTA 309 (450)
Q Consensus 235 ~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~i~~ 309 (450)
++|.++++. ++.... +|...|.+++++.....+|++++.|+++++|++...+... ............|...|++
T Consensus 390 ilWr~~~~~~~~~~~a~~~-gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~ 468 (775)
T KOG0319|consen 390 ILWRLNNNCSKSLCVAQAN-GHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINC 468 (775)
T ss_pred EEEEecCCcchhhhhhhhc-ccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccc
Confidence 999885433 333344 8999999999987677789999999999999997733111 1112233456679999999
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCC
Q 041325 310 LALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 310 l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~ 387 (450)
++++|+.++|++|+.|.+.+||+++... ....+.+|...|.|+.|++. .++|+|.|++|+||.+.
T Consensus 469 Vaia~ndkLiAT~SqDktaKiW~le~~~-------------l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is 535 (775)
T KOG0319|consen 469 VAIAPNDKLIATGSQDKTAKIWDLEQLR-------------LLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSIS 535 (775)
T ss_pred eEecCCCceEEecccccceeeecccCce-------------EEEEeeCCccceEEEEeccccceeEeccCCceEEEEEec
Confidence 9999999999999999999999999655 44899999999999999965 99999999999999999
Q ss_pred CCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 388 SSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+ +.|+.++.||...|..+.|..++. .|+|++.||-|+||+++
T Consensus 536 ~--------fSClkT~eGH~~aVlra~F~~~~~-------------qliS~~adGliKlWnik 577 (775)
T KOG0319|consen 536 T--------FSCLKTFEGHTSAVLRASFIRNGK-------------QLISAGADGLIKLWNIK 577 (775)
T ss_pred c--------ceeeeeecCccceeEeeeeeeCCc-------------EEEeccCCCcEEEEecc
Confidence 7 599999999999999999999999 99999999999999985
No 14
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.9e-38 Score=268.82 Aligned_cols=351 Identities=17% Similarity=0.254 Sum_probs=270.0
Q ss_pred CccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCC
Q 041325 51 SSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGD 128 (450)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 128 (450)
.......+.-++++...+++ .|..-|.|+.| ||.++||.+.||.|.+||=.+++.+...... .+|.+
T Consensus 168 dDn~v~ffeGPPFKFk~s~r--~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~---------~aHkG 236 (603)
T KOG0318|consen 168 DDNTVAFFEGPPFKFKSSFR--EHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDS---------DAHKG 236 (603)
T ss_pred CCCeEEEeeCCCeeeeeccc--ccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCC---------CCccc
Confidence 34555667777888888998 99999999999 8999999999999999999999988774432 28999
Q ss_pred ceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCc-ccccceeeeeeccCCCcceeEeeecCceEEEe----ec
Q 041325 129 AVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGK-LKNKYYERIATLPTLNDRFTKCFLANNYVQVR----RH 201 (450)
Q Consensus 129 ~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 201 (450)
.|.+|+|+||. +++++.|.+++|||+.+.........+. ...+.+-++.. ++.+. ....++.+.+. ..
T Consensus 237 sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq----kd~lI-tVSl~G~in~ln~~d~~ 311 (603)
T KOG0318|consen 237 SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ----KDHLI-TVSLSGTINYLNPSDPS 311 (603)
T ss_pred cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe----CCeEE-EEEcCcEEEEecccCCC
Confidence 99999999988 9999999999999999986654433322 22222222222 22222 22222333221 12
Q ss_pred ceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEE
Q 041325 202 KKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVW 281 (450)
Q Consensus 202 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw 281 (450)
....+.+|...|+++..++++++|++|+.||.|.-||..++..-+.....|...|.+++.+ ..+.+++.+.|.++++.
T Consensus 312 ~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~--~~~~~~t~g~Dd~l~~~ 389 (603)
T KOG0318|consen 312 VLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS--ESGELFTIGWDDTLRVI 389 (603)
T ss_pred hhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeec--CCCcEEEEecCCeEEEE
Confidence 4556789999999999999999999999999999999999988777656899999999988 55689999999999999
Q ss_pred eCcchhhhcc------ccchh-----------------hhhHh--------hcccceEEEEEcCCCCEEEEeeCCCcEEE
Q 041325 282 KKLRAALQVN------KKHSL-----------------VQTLE--------KHKSAVTALALSTDGTVLYSGACDRSILV 330 (450)
Q Consensus 282 d~~~~~~~~~------~~~~~-----------------~~~~~--------~~~~~i~~l~~~~~~~~l~~g~~dg~i~v 330 (450)
++..+..... .++.. +..++ ...-...+++++|+++.+++|+.||.|+|
T Consensus 390 ~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhv 469 (603)
T KOG0318|consen 390 SLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHV 469 (603)
T ss_pred ecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEE
Confidence 8754332110 00000 00001 01234578999999999999999999999
Q ss_pred EEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCc
Q 041325 331 WERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRR 408 (450)
Q Consensus 331 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~ 408 (450)
|.+...... ....+..|.++|++++|+++ +|++|...+.+.+||+.+.. .....+.-|+.
T Consensus 470 ysl~g~~l~-----------ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~-------~~~~~w~FHta 531 (603)
T KOG0318|consen 470 YSLSGDELK-----------EEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASRE-------VKTNRWAFHTA 531 (603)
T ss_pred EEecCCccc-----------ceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCc-------eecceeeeeee
Confidence 999865432 33466789999999999976 99999999999999999741 23344555999
Q ss_pred ceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 409 PVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 409 ~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
.|++++|+|+.. ++||||.|-.|.||+++
T Consensus 532 kI~~~aWsP~n~-------------~vATGSlDt~Viiysv~ 560 (603)
T KOG0318|consen 532 KINCVAWSPNNK-------------LVATGSLDTNVIIYSVK 560 (603)
T ss_pred eEEEEEeCCCce-------------EEEeccccceEEEEEcc
Confidence 999999999999 99999999999999984
No 15
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=9.1e-40 Score=274.30 Aligned_cols=289 Identities=25% Similarity=0.319 Sum_probs=241.4
Q ss_pred CCCcceEEEEEe---CCEEEEeeCCCcEEEecCCCCCceeeeecCCC--CcceeEEecCCCceEEEEEeCCe--EEEEeC
Q 041325 73 GNSSYIPSLAIA---GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVG--DHANVVATGNGDAVKSLVVLGDK--LFSAHQ 145 (450)
Q Consensus 73 ~h~~~v~~~~~d---~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~--~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~ 145 (450)
.|..+|.+.+|+ ...+++|+.|-..++|++....-......... ......-......|++|+|+.++ |++|+.
T Consensus 176 ~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~ 255 (524)
T KOG0273|consen 176 RHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSE 255 (524)
T ss_pred cCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeec
Confidence 699999999993 56899999999999999875111100000000 00000011234689999999555 999999
Q ss_pred CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEE
Q 041325 146 DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLL 225 (450)
Q Consensus 146 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 225 (450)
||.+++|+..... ...+..|.++|.++.|+.+|++|
T Consensus 256 ~G~~riw~~~G~l--------------------------------------------~~tl~~HkgPI~slKWnk~G~yi 291 (524)
T KOG0273|consen 256 DGEARIWNKDGNL--------------------------------------------ISTLGQHKGPIFSLKWNKKGTYI 291 (524)
T ss_pred CcEEEEEecCchh--------------------------------------------hhhhhccCCceEEEEEcCCCCEE
Confidence 9999999998762 22344699999999999999999
Q ss_pred EEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhccc
Q 041325 226 YSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS 305 (450)
Q Consensus 226 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 305 (450)
++++.|+++.+||..+++....+. .|..+...+.|. ++..+++++.|+.|+++.+.... ++.++.+|.+
T Consensus 292 lS~~vD~ttilwd~~~g~~~q~f~-~~s~~~lDVdW~--~~~~F~ts~td~~i~V~kv~~~~--------P~~t~~GH~g 360 (524)
T KOG0273|consen 292 LSGGVDGTTILWDAHTGTVKQQFE-FHSAPALDVDWQ--SNDEFATSSTDGCIHVCKVGEDR--------PVKTFIGHHG 360 (524)
T ss_pred EeccCCccEEEEeccCceEEEeee-eccCCccceEEe--cCceEeecCCCceEEEEEecCCC--------cceeeecccC
Confidence 999999999999999999988887 677776888998 56689999999999999986655 8889999999
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-----------eEEE
Q 041325 306 AVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-----------LLFS 374 (450)
Q Consensus 306 ~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----------~l~s 374 (450)
+|.++.|+|.|.+|++++.|++++||........ ..+.+|...|..+.|+|. .+++
T Consensus 361 ~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~-------------~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~s 427 (524)
T KOG0273|consen 361 EVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSV-------------HDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLAS 427 (524)
T ss_pred ceEEEEECCCCceEEEecCCCeeEeeecCCCcch-------------hhhhhhccceeeEeecCCCCccCCCcCCceEEE
Confidence 9999999999999999999999999998876544 678899999999999742 8999
Q ss_pred EeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 375 GSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 375 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
++.|++|++||+..+ .++..+..|..+|.+|+|+|++. ++|+|+.||.|++|+.+
T Consensus 428 as~dstV~lwdv~~g--------v~i~~f~kH~~pVysvafS~~g~-------------ylAsGs~dg~V~iws~~ 482 (524)
T KOG0273|consen 428 ASFDSTVKLWDVESG--------VPIHTLMKHQEPVYSVAFSPNGR-------------YLASGSLDGCVHIWSTK 482 (524)
T ss_pred eecCCeEEEEEccCC--------ceeEeeccCCCceEEEEecCCCc-------------EEEecCCCCeeEecccc
Confidence 999999999999985 88999999999999999999999 99999999999999875
No 16
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.9e-39 Score=289.39 Aligned_cols=291 Identities=24% Similarity=0.414 Sum_probs=243.4
Q ss_pred cceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeee-------------------ecCCCCcce
Q 041325 62 EHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNIT-------------------STDVGDHAN 120 (450)
Q Consensus 62 ~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~-------------------~~~~~~~~~ 120 (450)
+-.|..++. .-...++|..| |+.+||.|-.|..|++|.+...++.... .........
T Consensus 367 pSic~YT~~--nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~ 444 (707)
T KOG0263|consen 367 PSICMYTFH--NTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTS 444 (707)
T ss_pred CcEEEEEEE--EcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCcee
Confidence 346777777 66778999999 6889999999999999999853321110 011122233
Q ss_pred eEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEE
Q 041325 121 VVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQV 198 (450)
Q Consensus 121 ~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (450)
..+.||.++|....|+|+. |+++++|+++|+|.+++.. ++
T Consensus 445 ~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s----------------~~---------------------- 486 (707)
T KOG0263|consen 445 RTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS----------------CL---------------------- 486 (707)
T ss_pred EEeecCCCceeeeeecccccceeeccCCcceeeeecccce----------------eE----------------------
Confidence 4588999999999999988 9999999999999999883 22
Q ss_pred eecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcE
Q 041325 199 RRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKI 278 (450)
Q Consensus 199 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 278 (450)
..+.+|..+|.++.|+|.|-+||+++.|++.++|......+++.+. +|...|.|+.|+| +..++++|+.|.+|
T Consensus 487 -----V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifa-ghlsDV~cv~FHP-Ns~Y~aTGSsD~tV 559 (707)
T KOG0263|consen 487 -----VIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFA-GHLSDVDCVSFHP-NSNYVATGSSDRTV 559 (707)
T ss_pred -----EEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhc-ccccccceEEECC-cccccccCCCCceE
Confidence 2344799999999999999999999999999999999999999888 9999999999999 56699999999999
Q ss_pred EEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC
Q 041325 279 KVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358 (450)
Q Consensus 279 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (450)
|+||+.++. .++.|.+|.++|.+++|+|+|++|++|+.||.|.+||+.+++.+ ..+.+|
T Consensus 560 RlWDv~~G~--------~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v-------------~~l~~H 618 (707)
T KOG0263|consen 560 RLWDVSTGN--------SVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLV-------------KQLKGH 618 (707)
T ss_pred EEEEcCCCc--------EEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcch-------------hhhhcc
Confidence 999998877 78889999999999999999999999999999999999998855 788999
Q ss_pred ccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccc----------------cCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 359 TKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTD----------------HQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 359 ~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~----------------~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
.+.|.++.|+ +..|++|+.|..|++||+...... ......++..+.....+|.+|.|....-
T Consensus 619 t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK~tpv~~l~FtrrNl 698 (707)
T KOG0263|consen 619 TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTKNTPVVGLHFTRRNL 698 (707)
T ss_pred cCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeecCceEEEEEEeccce
Confidence 9999999998 669999999999999998754222 1122235666666777899999887665
No 17
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.4e-38 Score=243.12 Aligned_cols=281 Identities=20% Similarity=0.350 Sum_probs=239.3
Q ss_pred cCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEE
Q 041325 55 KQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKS 132 (450)
Q Consensus 55 ~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 132 (450)
+..+...++.|.++++ ...+.|..+.. |++.||+|+. -.||+||++++.... ...+.+|...|++
T Consensus 22 IRfWqa~tG~C~rTiq--h~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~P----------v~t~e~h~kNVta 88 (311)
T KOG0315|consen 22 IRFWQALTGICSRTIQ--HPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPNP----------VATFEGHTKNVTA 88 (311)
T ss_pred eeeeehhcCeEEEEEe--cCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCCc----------eeEEeccCCceEE
Confidence 3456777899999998 67789999999 8889998876 689999999877432 2458899999999
Q ss_pred EEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCC
Q 041325 133 LVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHV 210 (450)
Q Consensus 133 l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (450)
+.|..++ +++|++||+++|||++.... ... ..|.
T Consensus 89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~----------------qR~----------------------------~~~~ 124 (311)
T KOG0315|consen 89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSC----------------QRN----------------------------YQHN 124 (311)
T ss_pred EEEeecCeEEEecCCCceEEEEeccCccc----------------chh----------------------------ccCC
Confidence 9998666 99999999999999998622 111 1477
Q ss_pred CceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc
Q 041325 211 DTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 290 (450)
.+|+++..+|+...|++|..+|.|++||+.+..+...+.......|.++...|++. +++.+...|..++|++.... .
T Consensus 125 spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgs-ml~a~nnkG~cyvW~l~~~~--~ 201 (311)
T KOG0315|consen 125 SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGS-MLAAANNKGNCYVWRLLNHQ--T 201 (311)
T ss_pred CCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCc-EEEEecCCccEEEEEccCCC--c
Confidence 89999999999999999999999999999998888888767778999999999555 89999999999999997743 2
Q ss_pred cccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV-- 368 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 368 (450)
.....++..++.|++-+..+.+|||+++|++++.|.+++||+.++. +.....+.+|...+...+|+
T Consensus 202 ~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~------------~kle~~l~gh~rWvWdc~FS~d 269 (311)
T KOG0315|consen 202 ASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF------------FKLELVLTGHQRWVWDCAFSAD 269 (311)
T ss_pred cccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc------------eeeEEEeecCCceEEeeeeccC
Confidence 2455677889999999999999999999999999999999999865 12456788999999999998
Q ss_pred CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEE
Q 041325 369 SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTA 415 (450)
Q Consensus 369 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 415 (450)
+.||+||+.|+.+++|++..+ +.+....+|.....|++.
T Consensus 270 g~YlvTassd~~~rlW~~~~~--------k~v~qy~gh~K~~vc~~l 308 (311)
T KOG0315|consen 270 GEYLVTASSDHTARLWDLSAG--------KEVRQYQGHHKAAVCVAL 308 (311)
T ss_pred ccEEEecCCCCceeecccccC--------ceeeecCCcccccEEEEe
Confidence 459999999999999999985 678889999988887765
No 18
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.6e-38 Score=252.17 Aligned_cols=283 Identities=25% Similarity=0.354 Sum_probs=236.0
Q ss_pred cCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCC
Q 041325 72 KGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDH 147 (450)
Q Consensus 72 ~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg 147 (450)
.||.+.|..+.| +|..||||+.|..|.+|++....... ..+.+|.++|..+.|..+. +++++.|+
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~-----------~~lkgHsgAVM~l~~~~d~s~i~S~gtDk 112 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENF-----------WVLKGHSGAVMELHGMRDGSHILSCGTDK 112 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccce-----------eeeccccceeEeeeeccCCCEEEEecCCc
Confidence 399999999999 89999999999999999965433211 2367999999999999777 99999999
Q ss_pred eEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCC-CEEE
Q 041325 148 KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDG-SLLY 226 (450)
Q Consensus 148 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~ 226 (450)
+|+.||+++++. ...+.+|.+-|+++.-+.-| .++.
T Consensus 113 ~v~~wD~~tG~~-------------------------------------------~rk~k~h~~~vNs~~p~rrg~~lv~ 149 (338)
T KOG0265|consen 113 TVRGWDAETGKR-------------------------------------------IRKHKGHTSFVNSLDPSRRGPQLVC 149 (338)
T ss_pred eEEEEeccccee-------------------------------------------eehhccccceeeecCccccCCeEEE
Confidence 999999999932 23344788889988855544 4667
Q ss_pred EEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccc
Q 041325 227 STSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSA 306 (450)
Q Consensus 227 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 306 (450)
+++.|+++++||+++...++.+. .+..++++.|....+ .+.+|+-|+.|++||++.++ ....+.+|...
T Consensus 150 SgsdD~t~kl~D~R~k~~~~t~~--~kyqltAv~f~d~s~-qv~sggIdn~ikvWd~r~~d--------~~~~lsGh~Dt 218 (338)
T KOG0265|consen 150 SGSDDGTLKLWDIRKKEAIKTFE--NKYQLTAVGFKDTSD-QVISGGIDNDIKVWDLRKND--------GLYTLSGHADT 218 (338)
T ss_pred ecCCCceEEEEeecccchhhccc--cceeEEEEEeccccc-ceeeccccCceeeeccccCc--------ceEEeecccCc
Confidence 78899999999999999888885 678899999987444 78999999999999998877 78899999999
Q ss_pred eEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCc----cceEEEEEeCC--eEEEEeCCCe
Q 041325 307 VTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT----KAILCLAVVSN--LLFSGSSDNT 380 (450)
Q Consensus 307 i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~--~l~s~~~dg~ 380 (450)
|+.+..+|+|.++.+-+.|.++++||++....- ......+.+|. ......+|+++ .+.+|+.|+.
T Consensus 219 It~lsls~~gs~llsnsMd~tvrvwd~rp~~p~---------~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~ 289 (338)
T KOG0265|consen 219 ITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS---------QRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRF 289 (338)
T ss_pred eeeEEeccCCCccccccccceEEEEEecccCCC---------CceEEEeecchhhhhhhcceeeccCCCCccccccccce
Confidence 999999999999999999999999999843211 11123333332 33466778755 8999999999
Q ss_pred EEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 381 IRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 381 v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+++||..+ ...+..+.||.+.|++++|+|... +|.+++.|.+|++=++
T Consensus 290 vyvwd~~~--------r~~lyklpGh~gsvn~~~Fhp~e~-------------iils~~sdk~i~lgei 337 (338)
T KOG0265|consen 290 VYVWDTTS--------RRILYKLPGHYGSVNEVDFHPTEP-------------IILSCSSDKTIYLGEI 337 (338)
T ss_pred EEEeeccc--------ccEEEEcCCcceeEEEeeecCCCc-------------EEEEeccCceeEeecc
Confidence 99999886 478999999999999999999999 9999999999988554
No 19
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.4e-37 Score=270.99 Aligned_cols=370 Identities=22% Similarity=0.337 Sum_probs=269.0
Q ss_pred cccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEE
Q 041325 12 RRNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLY 89 (450)
Q Consensus 12 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~ 89 (450)
+++..+.|+|++...+....+--.-. -.+...+. ...++.+.+++. ||-..|+++.| |.++|+
T Consensus 97 ~~v~~i~fSPng~~fav~~gn~lqiw----------~~P~~~~~---~~~pFvl~r~~~--g~fddi~si~Ws~DSr~l~ 161 (893)
T KOG0291|consen 97 RGVGAIKFSPNGKFFAVGCGNLLQIW----------HAPGEIKN---EFNPFVLHRTYL--GHFDDITSIDWSDDSRLLV 161 (893)
T ss_pred CccceEEECCCCcEEEEEecceeEEE----------ecCcchhc---ccCcceEeeeec--CCccceeEEEeccCCceEE
Confidence 45667888888888777654432211 00001111 233456777888 99999999999 799999
Q ss_pred EeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEe----
Q 041325 90 GGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYS---- 163 (450)
Q Consensus 90 tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~---- 163 (450)
+|+.|-.+++|+++..+-... ..+.+|.+.|.+.-|..+. +++.+.||.+.+|...........
T Consensus 162 ~gsrD~s~rl~~v~~~k~~~~----------~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd 231 (893)
T KOG0291|consen 162 TGSRDLSARLFGVDGNKNLFT----------YALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKD 231 (893)
T ss_pred eccccceEEEEEeccccccce----------EeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccc
Confidence 999999999999987664222 2478999999999998665 999999999999998722110000
Q ss_pred ------------ccCcccccce--------------------------------------------eeeeeccCCCccee
Q 041325 164 ------------TSGKLKNKYY--------------------------------------------ERIATLPTLNDRFT 187 (450)
Q Consensus 164 ------------~~~~~~~~~~--------------------------------------------~~~~~~~~~~~~~~ 187 (450)
.+.......+ ..+..+...+..+.
T Consensus 232 ~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~ 311 (893)
T KOG0291|consen 232 EEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKIL 311 (893)
T ss_pred ccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceee
Confidence 0000000000 00000111100110
Q ss_pred Eeeec--Cc----------eEEEeec----ceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecc
Q 041325 188 KCFLA--NN----------YVQVRRH----KKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNA 251 (450)
Q Consensus 188 ~~~~~--~~----------~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 251 (450)
.+... +. .+.++.. -.....+|...+++++++|||+++++|+.||.|+|||...+-|..++. .
T Consensus 312 t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFt-e 390 (893)
T KOG0291|consen 312 TVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFT-E 390 (893)
T ss_pred EEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEec-c
Confidence 00000 11 1111111 122346899999999999999999999999999999999999999999 8
Q ss_pred cccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhh-cccceEEEEEcCCCCEEEEeeCCC-cEE
Q 041325 252 HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEK-HKSAVTALALSTDGTVLYSGACDR-SIL 329 (450)
Q Consensus 252 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~g~~dg-~i~ 329 (450)
|...|+.+.|+. .++.+++.+-||+|+.||+.... ..+++.. ..-...|++..|.|.++.+|+.|. .|.
T Consensus 391 Hts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYr--------NfRTft~P~p~QfscvavD~sGelV~AG~~d~F~If 461 (893)
T KOG0291|consen 391 HTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYR--------NFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIF 461 (893)
T ss_pred CCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccc--------eeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEE
Confidence 999999999998 44589999999999999996544 4444443 234567899999999999999887 599
Q ss_pred EEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCC
Q 041325 330 VWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHR 407 (450)
Q Consensus 330 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~ 407 (450)
+|++.+|+.+ ..+.+|.++|.+++|+ ++.|+++|+|.+||+||+-.. ...+..+. +.
T Consensus 462 vWS~qTGqll-------------DiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s-------~~~vEtl~-i~ 520 (893)
T KOG0291|consen 462 VWSVQTGQLL-------------DILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSS-------SGTVETLE-IR 520 (893)
T ss_pred EEEeecCeee-------------ehhcCCCCcceeeEEccccCeEEeccccceEEEEEeecc-------CceeeeEe-ec
Confidence 9999999865 7899999999998877 669999999999999998753 22344444 67
Q ss_pred cceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 408 RPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 408 ~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
..+..++|.|+|+ -|+.+..||.|.+||++
T Consensus 521 sdvl~vsfrPdG~-------------elaVaTldgqItf~d~~ 550 (893)
T KOG0291|consen 521 SDVLAVSFRPDGK-------------ELAVATLDGQITFFDIK 550 (893)
T ss_pred cceeEEEEcCCCC-------------eEEEEEecceEEEEEhh
Confidence 7899999999999 89999999999999974
No 20
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-38 Score=262.04 Aligned_cols=307 Identities=23% Similarity=0.350 Sum_probs=247.2
Q ss_pred CCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcc
Q 041325 42 PSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHA 119 (450)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~ 119 (450)
.+...+....+.+.++|+ +..++|. .|.+.|.-+.| +|++|||++.|.+..+|.+.........
T Consensus 197 dsvsll~Dh~c~~~qip~----qt~qil~--~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~-------- 262 (519)
T KOG0293|consen 197 DSVSLLSDHFCGRLQIPS----QTWQILQ--DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLK-------- 262 (519)
T ss_pred chhhhhhhcccCcccCCc----hhhhhHh--hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeee--------
Confidence 334445555667777777 7778888 99999999999 8999999999999999987665543321
Q ss_pred eeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEE
Q 041325 120 NVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQ 197 (450)
Q Consensus 120 ~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (450)
..+.+|..+|..+.|+||. |++|+.|..+.+||+.++.. ...++.
T Consensus 263 -~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~----------------~~~y~~---------------- 309 (519)
T KOG0293|consen 263 -KTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDL----------------RHLYPS---------------- 309 (519)
T ss_pred -eeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchh----------------hhhccc----------------
Confidence 2377999999999999887 99999999999999999832 222221
Q ss_pred EeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCc
Q 041325 198 VRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTK 277 (450)
Q Consensus 198 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 277 (450)
++...+.+++|.|||..+++|+.|+.+..||+. |..+...+......|.+++..+++. .+++.+.|..
T Consensus 310 ----------~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlait~Dgk-~vl~v~~d~~ 377 (519)
T KOG0293|consen 310 ----------GLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAITYDGK-YVLLVTVDKK 377 (519)
T ss_pred ----------CcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccccceeEEEEEcCCCc-EEEEEecccc
Confidence 245689999999999999999999999999997 4555555534456799999998555 6777779999
Q ss_pred EEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccC
Q 041325 278 IKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG 357 (450)
Q Consensus 278 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (450)
|++|+.++.. ... +.....+|++++.+.|++++++.-.+..+++||+...+.+ ..+.+
T Consensus 378 i~l~~~e~~~--------dr~-lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv-------------~kY~G 435 (519)
T KOG0293|consen 378 IRLYNREARV--------DRG-LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLV-------------RKYFG 435 (519)
T ss_pred eeeechhhhh--------hhc-cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHH-------------HHhhc
Confidence 9999986543 121 3335678999999999999999999999999999976543 66777
Q ss_pred Cccc--eEEEEEe---CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCce
Q 041325 358 HTKA--ILCLAVV---SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTS 432 (450)
Q Consensus 358 ~~~~--v~~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~ 432 (450)
|... +..-+|. ..++++||.|+.|+||+..++ +++..+.||...|++++|+|...+
T Consensus 436 hkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg--------kll~~LsGHs~~vNcVswNP~~p~----------- 496 (519)
T KOG0293|consen 436 HKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG--------KLLAVLSGHSKTVNCVSWNPADPE----------- 496 (519)
T ss_pred ccccceEEEeccCCCCcceEEecCCCceEEEEEccCC--------ceeEeecCCcceeeEEecCCCCHH-----------
Confidence 7654 2333343 249999999999999999885 899999999999999999999886
Q ss_pred EEEEEcccCCcEEEEEe
Q 041325 433 FLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 433 ~~l~s~~~Dg~i~iw~l 449 (450)
++|+||+||+||||..
T Consensus 497 -m~ASasDDgtIRIWg~ 512 (519)
T KOG0293|consen 497 -MFASASDDGTIRIWGP 512 (519)
T ss_pred -HhhccCCCCeEEEecC
Confidence 8999999999999975
No 21
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-37 Score=244.07 Aligned_cols=257 Identities=21% Similarity=0.381 Sum_probs=212.9
Q ss_pred CCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe
Q 041325 59 AASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL 136 (450)
Q Consensus 59 ~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 136 (450)
....+.+++.|+ ||...|..+.. ||++.++++.||++|+||+.+++.... +.+|...|.+++|+
T Consensus 49 d~~~G~~~r~~~--GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~------------f~GH~~dVlsva~s 114 (315)
T KOG0279|consen 49 DIKYGVPVRRLT--GHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRR------------FVGHTKDVLSVAFS 114 (315)
T ss_pred ccccCceeeeee--ccceEecceEEccCCceEEeccccceEEEEEecCCcEEEE------------EEecCCceEEEEec
Confidence 566678899999 99999999988 899999999999999999999976665 88999999999999
Q ss_pred CCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceE
Q 041325 137 GDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVS 214 (450)
Q Consensus 137 ~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 214 (450)
+|. +++|+.|++|++|+...... .++.. ..+.+.|.
T Consensus 115 ~dn~qivSGSrDkTiklwnt~g~ck-----------------~t~~~-------------------------~~~~~WVs 152 (315)
T KOG0279|consen 115 TDNRQIVSGSRDKTIKLWNTLGVCK-----------------YTIHE-------------------------DSHREWVS 152 (315)
T ss_pred CCCceeecCCCcceeeeeeecccEE-----------------EEEec-------------------------CCCcCcEE
Confidence 877 99999999999999987621 11100 02377999
Q ss_pred EEEEccC--CCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccc
Q 041325 215 ALALSSD--GSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNK 292 (450)
Q Consensus 215 ~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 292 (450)
|+.|+|+ ..+|++++.|++|++||+++.+....+. +|.+.++.++++|++. ++++|+.||.+.+||++.++
T Consensus 153 cvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~-gh~~~v~t~~vSpDGs-lcasGgkdg~~~LwdL~~~k----- 225 (315)
T KOG0279|consen 153 CVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI-GHSGYVNTVTVSPDGS-LCASGGKDGEAMLWDLNEGK----- 225 (315)
T ss_pred EEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc-cccccEEEEEECCCCC-EEecCCCCceEEEEEccCCc-----
Confidence 9999997 7899999999999999999988888887 8999999999999555 89999999999999998877
Q ss_pred cchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CC
Q 041325 293 KHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SN 370 (450)
Q Consensus 293 ~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~ 370 (450)
.+..+ .+...|.+++|+|+...|+.+. +..|+|||+.++..+.++..+.... ..+.......+++|+ |.
T Consensus 226 ---~lysl-~a~~~v~sl~fspnrywL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~----s~~~~~~~clslaws~dG~ 296 (315)
T KOG0279|consen 226 ---NLYSL-EAFDIVNSLCFSPNRYWLCAAT-ATSIKIWDLESKAVVEELKLDGIGP----SSKAGDPICLSLAWSADGQ 296 (315)
T ss_pred ---eeEec-cCCCeEeeEEecCCceeEeecc-CCceEEEeccchhhhhhcccccccc----ccccCCcEEEEEEEcCCCc
Confidence 55555 4789999999999876666554 5569999999998886555443221 222233445778888 67
Q ss_pred eEEEEeCCCeEEEeeCC
Q 041325 371 LLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 371 ~l~s~~~dg~v~iwd~~ 387 (450)
.|++|..|+.|++|.+.
T Consensus 297 tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 297 TLFAGYTDNVIRVWQVA 313 (315)
T ss_pred EEEeeecCCcEEEEEee
Confidence 99999999999999875
No 22
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.8e-37 Score=236.74 Aligned_cols=265 Identities=18% Similarity=0.356 Sum_probs=228.6
Q ss_pred eeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--
Q 041325 64 QCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 139 (450)
+.+++|. +|.++|.++.| ||+|.+|++.|.+|++||...+.+++. +.+|...|..++.+.|.
T Consensus 8 kr~~~l~--~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~likt------------YsghG~EVlD~~~s~Dnsk 73 (307)
T KOG0316|consen 8 KRLSILD--CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKT------------YSGHGHEVLDAALSSDNSK 73 (307)
T ss_pred hhceeec--ccccceEEEEEccCCCEEEEcCCCceEEeecccccceeee------------ecCCCceeeeccccccccc
Confidence 4567777 99999999999 899999999999999999999998887 78999999999988665
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS 219 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (450)
+++|+.|+.|.+||+++++ ....+.+|...|+.+.|+
T Consensus 74 f~s~GgDk~v~vwDV~TGk-------------------------------------------v~Rr~rgH~aqVNtV~fN 110 (307)
T KOG0316|consen 74 FASCGGDKAVQVWDVNTGK-------------------------------------------VDRRFRGHLAQVNTVRFN 110 (307)
T ss_pred cccCCCCceEEEEEcccCe-------------------------------------------eeeecccccceeeEEEec
Confidence 9999999999999999993 344566899999999999
Q ss_pred cCCCEEEEEeCCCcEEEEecCCC--eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhh
Q 041325 220 SDGSLLYSTSWDRTFKIWRTSDF--RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLV 297 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 297 (450)
.+...+++|+.|..+++||.++. ++++.+. .....|.++... +..+++|+.||+++.||++.+. ..
T Consensus 111 eesSVv~SgsfD~s~r~wDCRS~s~ePiQild-ea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~--------l~ 178 (307)
T KOG0316|consen 111 EESSVVASGSFDSSVRLWDCRSRSFEPIQILD-EAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGT--------LS 178 (307)
T ss_pred CcceEEEeccccceeEEEEcccCCCCccchhh-hhcCceeEEEec---ccEEEeeccCCcEEEEEeecce--------ee
Confidence 99999999999999999999864 5677776 677889999986 4589999999999999998876 33
Q ss_pred hhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEE--Ee--CCeEE
Q 041325 298 QTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLA--VV--SNLLF 373 (450)
Q Consensus 298 ~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~--~~~l~ 373 (450)
... ...+|++++|++|++..++++.|++|++.|-.+|+.+ ...++|...-..+. +. ...++
T Consensus 179 sDy--~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL-------------~sYkGhkn~eykldc~l~qsdthV~ 243 (307)
T KOG0316|consen 179 SDY--FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLL-------------KSYKGHKNMEYKLDCCLNQSDTHVF 243 (307)
T ss_pred hhh--cCCcceeEEecCCCCEEEEeeccceeeecccchhHHH-------------HHhcccccceeeeeeeecccceeEE
Confidence 333 4578999999999999999999999999999999865 67888876654333 22 34999
Q ss_pred EEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcc-eEEEEEEecCC
Q 041325 374 SGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRP-VKCLTAVVDSD 420 (450)
Q Consensus 374 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~~~~~ 420 (450)
+|++||.|++||+... ..+..+..|... |.++.++|...
T Consensus 244 sgSEDG~Vy~wdLvd~--------~~~sk~~~~~~v~v~dl~~hp~~~ 283 (307)
T KOG0316|consen 244 SGSEDGKVYFWDLVDE--------TQISKLSVVSTVIVTDLSCHPTMD 283 (307)
T ss_pred eccCCceEEEEEeccc--------eeeeeeccCCceeEEeeecccCcc
Confidence 9999999999999874 667778878777 89999999987
No 23
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=3e-38 Score=281.85 Aligned_cols=269 Identities=22% Similarity=0.384 Sum_probs=222.5
Q ss_pred CCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecce
Q 041325 126 NGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKK 203 (450)
Q Consensus 126 h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (450)
-...++|..|+++. ||.|-.|..|++|.+...+............. .+...+.. .+..........
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~-----d~~sad~~-------~~~~D~~~~~~~ 444 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNI-----DTESADVD-------VDMLDDDSSGTS 444 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccc-----cccccchh-------hhhccccCCcee
Confidence 34589999999888 88888999999999986532211111111000 00000000 000000011233
Q ss_pred eeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeC
Q 041325 204 CTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKK 283 (450)
Q Consensus 204 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 283 (450)
..+.+|.++|....|+|+.++|++++.|+++|+|.+.+..++..++ +|..+|+.+.|+| .+.++++++.|++.++|..
T Consensus 445 ~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~-GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~ 522 (707)
T KOG0263|consen 445 RTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYK-GHLAPVWDVQFAP-RGYYFATASHDQTARLWST 522 (707)
T ss_pred EEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEec-CCCcceeeEEecC-CceEEEecCCCceeeeeec
Confidence 4477999999999999999999999999999999999999999999 9999999999998 5668999999999999998
Q ss_pred cchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceE
Q 041325 284 LRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAIL 363 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 363 (450)
...+ +.+.+.+|.+.|.|+.|+|+..|+++|+.|.++++||..+|..+ +.+.+|.++|+
T Consensus 523 d~~~--------PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~V-------------RiF~GH~~~V~ 581 (707)
T KOG0263|consen 523 DHNK--------PLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSV-------------RIFTGHKGPVT 581 (707)
T ss_pred ccCC--------chhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEE-------------EEecCCCCceE
Confidence 7665 89999999999999999999999999999999999999999765 78899999999
Q ss_pred EEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccC
Q 041325 364 CLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLD 441 (450)
Q Consensus 364 ~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~D 441 (450)
+++|+ |.+|++|+.||.|++||+.++ ..+..+.+|++.|.++.|+.++. .||+||.|
T Consensus 582 al~~Sp~Gr~LaSg~ed~~I~iWDl~~~--------~~v~~l~~Ht~ti~SlsFS~dg~-------------vLasgg~D 640 (707)
T KOG0263|consen 582 ALAFSPCGRYLASGDEDGLIKIWDLANG--------SLVKQLKGHTGTIYSLSFSRDGN-------------VLASGGAD 640 (707)
T ss_pred EEEEcCCCceEeecccCCcEEEEEcCCC--------cchhhhhcccCceeEEEEecCCC-------------EEEecCCC
Confidence 99998 559999999999999999985 78889999999999999999999 99999999
Q ss_pred CcEEEEEeC
Q 041325 442 CEIKIWQIR 450 (450)
Q Consensus 442 g~i~iw~l~ 450 (450)
.+|++||+.
T Consensus 641 nsV~lWD~~ 649 (707)
T KOG0263|consen 641 NSVRLWDLT 649 (707)
T ss_pred CeEEEEEch
Confidence 999999974
No 24
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=9.4e-37 Score=270.32 Aligned_cols=302 Identities=21% Similarity=0.363 Sum_probs=250.9
Q ss_pred CCCCccceeeeEEeecCCCcceEEEEEe--CCEEEEeeCC-CcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEE
Q 041325 57 APAASEHQCSATLKVKGNSSYIPSLAIA--GKLLYGGSSN-GEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSL 133 (450)
Q Consensus 57 ~~~~~~~~~~~~l~~~~h~~~v~~~~~d--~~~l~tgs~d-g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 133 (450)
.+..+...+++.+. -...+|..++|+ |.+||.|+.. |.+-||+..+...+.. ..+|...++++
T Consensus 291 LyelP~f~lih~LS--is~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlK------------QQgH~~~i~~l 356 (893)
T KOG0291|consen 291 LYELPDFNLIHSLS--ISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLK------------QQGHSDRITSL 356 (893)
T ss_pred EEecCCceEEEEee--cccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeee------------ccccccceeeE
Confidence 56667778999999 667789999995 9999998875 8999999998876655 56999999999
Q ss_pred EEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCC
Q 041325 134 VVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVD 211 (450)
Q Consensus 134 ~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (450)
+++||+ +++|+.||.|++||..++ -|+.++. .|+.
T Consensus 357 ~YSpDgq~iaTG~eDgKVKvWn~~Sg----------------fC~vTFt---------------------------eHts 393 (893)
T KOG0291|consen 357 AYSPDGQLIATGAEDGKVKVWNTQSG----------------FCFVTFT---------------------------EHTS 393 (893)
T ss_pred EECCCCcEEEeccCCCcEEEEeccCc----------------eEEEEec---------------------------cCCC
Confidence 999996 999999999999999998 5555554 7999
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCC-cEEEEeCcchhhhc
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADT-KIKVWKKLRAALQV 290 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~ 290 (450)
.|+.+.|+..|+.+++.+.||+|+.||+...+..+++..+......|++..|.+. ++++|+.|. .|.+|++.+++
T Consensus 394 ~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGe-lV~AG~~d~F~IfvWS~qTGq--- 469 (893)
T KOG0291|consen 394 GVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGE-LVCAGAQDSFEIFVWSVQTGQ--- 469 (893)
T ss_pred ceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCC-EEEeeccceEEEEEEEeecCe---
Confidence 9999999999999999999999999999999999999877777788888887554 677777665 69999999888
Q ss_pred cccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV-- 368 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 368 (450)
++..+.+|+++|.+++|+|++..|++|+.|.+|++||+-..... .....+...+++++|.
T Consensus 470 -----llDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~-------------vEtl~i~sdvl~vsfrPd 531 (893)
T KOG0291|consen 470 -----LLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGT-------------VETLEIRSDVLAVSFRPD 531 (893)
T ss_pred -----eeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCce-------------eeeEeeccceeEEEEcCC
Confidence 89999999999999999999999999999999999998754321 2233456778899998
Q ss_pred CCeEEEEeCCCeEEEeeCCCCcccc--------CCCce----eEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEE
Q 041325 369 SNLLFSGSSDNTIRIWRRSSSVTDH--------QKGYS----CLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVY 436 (450)
Q Consensus 369 ~~~l~s~~~dg~v~iwd~~~~~~~~--------~~~~~----~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~ 436 (450)
|+.|+++.-||.|.+||.+.+.... ..+.. ....-.......+.+++++||. +++
T Consensus 532 G~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~-------------~Il 598 (893)
T KOG0291|consen 532 GKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGK-------------CIL 598 (893)
T ss_pred CCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCC-------------EEE
Confidence 5699999999999999988653210 00011 1111122346899999999999 999
Q ss_pred EcccCCcEEEEEeC
Q 041325 437 SGSLDCEIKIWQIR 450 (450)
Q Consensus 437 s~~~Dg~i~iw~l~ 450 (450)
+||....|+||+++
T Consensus 599 AgG~sn~iCiY~v~ 612 (893)
T KOG0291|consen 599 AGGESNSICIYDVP 612 (893)
T ss_pred ecCCcccEEEEECc
Confidence 99999999999974
No 25
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.8e-36 Score=264.88 Aligned_cols=282 Identities=34% Similarity=0.607 Sum_probs=239.6
Q ss_pred eeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EE
Q 041325 66 SATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LF 141 (450)
Q Consensus 66 ~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~ 141 (450)
+++++ +|..+|++++| ++++|++++.||.|++|++.+++.... +..|...+..+.|.++. ++
T Consensus 2 ~~~~~--~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~------------~~~~~~~i~~~~~~~~~~~l~ 67 (289)
T cd00200 2 RRTLK--GHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT------------LKGHTGPVRDVAASADGTYLA 67 (289)
T ss_pred chHhc--ccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEE------------EecCCcceeEEEECCCCCEEE
Confidence 34566 99999999999 679999999999999999988764443 56888899999999775 99
Q ss_pred EEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC
Q 041325 142 SAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD 221 (450)
Q Consensus 142 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 221 (450)
+++.||.|++|++...+ ....+..|...+.++.|+++
T Consensus 68 ~~~~~~~i~i~~~~~~~-------------------------------------------~~~~~~~~~~~i~~~~~~~~ 104 (289)
T cd00200 68 SGSSDKTIRLWDLETGE-------------------------------------------CVRTLTGHTSYVSSVAFSPD 104 (289)
T ss_pred EEcCCCeEEEEEcCccc-------------------------------------------ceEEEeccCCcEEEEEEcCC
Confidence 99999999999998752 11223357778999999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHh
Q 041325 222 GSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLE 301 (450)
Q Consensus 222 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 301 (450)
++++++++.|+.|.+||+.+++....+. .|...+.++.++|. ..++++++.||.|++||++.++ ....+.
T Consensus 105 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~-~~~l~~~~~~~~i~i~d~~~~~--------~~~~~~ 174 (289)
T cd00200 105 GRILSSSSRDKTIKVWDVETGKCLTTLR-GHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGK--------CVATLT 174 (289)
T ss_pred CCEEEEecCCCeEEEEECCCcEEEEEec-cCCCcEEEEEEcCc-CCEEEEEcCCCcEEEEEccccc--------cceeEe
Confidence 8888888889999999999888888887 78889999999985 5577777779999999997655 555666
Q ss_pred hcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCC
Q 041325 302 KHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDN 379 (450)
Q Consensus 302 ~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg 379 (450)
.|...+.+++|+|+++.+++++.|+.|++||++.++.+ ..+..|...+.++.|++ .++++++.||
T Consensus 175 ~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~-------------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 241 (289)
T cd00200 175 GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCL-------------GTLRGHENGVNSVAFSPDGYLLASGSEDG 241 (289)
T ss_pred cCccccceEEECCCcCEEEEecCCCcEEEEECCCCcee-------------cchhhcCCceEEEEEcCCCcEEEEEcCCC
Confidence 78889999999999999999999999999999976644 45557888999999986 4777777799
Q ss_pred eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 380 TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 380 ~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
.|++||+.++ .....+..|...|.+++|++++. +|++++.||.|++|+
T Consensus 242 ~i~i~~~~~~--------~~~~~~~~~~~~i~~~~~~~~~~-------------~l~~~~~d~~i~iw~ 289 (289)
T cd00200 242 TIRVWDLRTG--------ECVQTLSGHTNSVTSLAWSPDGK-------------RLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEcCCc--------eeEEEccccCCcEEEEEECCCCC-------------EEEEecCCCeEEecC
Confidence 9999999863 56677778999999999999988 899999999999996
No 26
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=1.4e-37 Score=254.37 Aligned_cols=287 Identities=25% Similarity=0.438 Sum_probs=238.1
Q ss_pred eeeeEEeecCCCcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe--CCe--
Q 041325 64 QCSATLKVKGNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL--GDK-- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~-- 139 (450)
++++-+ -|.++|.++...+++|+||+.||.+++||..... ... ..||.++|.+++|. +..
T Consensus 97 ~pl~~~---~hdDWVSsv~~~~~~IltgsYDg~~riWd~~Gk~-~~~------------~~Ght~~ik~v~~v~~n~~~~ 160 (423)
T KOG0313|consen 97 KPLQCF---LHDDWVSSVKGASKWILTGSYDGTSRIWDLKGKS-IKT------------IVGHTGPIKSVAWVIKNSSSC 160 (423)
T ss_pred Cccccc---cchhhhhhhcccCceEEEeecCCeeEEEecCCce-EEE------------EecCCcceeeeEEEecCCccc
Confidence 444444 5999999999999999999999999999976543 333 67999999999986 222
Q ss_pred -EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEE
Q 041325 140 -LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALAL 218 (450)
Q Consensus 140 -l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 218 (450)
+++++.|.++++|.++.+.... .......+|...|.++..
T Consensus 161 ~fvsas~Dqtl~Lw~~~~~~~~~---------------------------------------~~~~~~~GHk~~V~sVsv 201 (423)
T KOG0313|consen 161 LFVSASMDQTLRLWKWNVGENKV---------------------------------------KALKVCRGHKRSVDSVSV 201 (423)
T ss_pred eEEEecCCceEEEEEecCchhhh---------------------------------------hHHhHhcccccceeEEEe
Confidence 9999999999999998874311 011122379999999999
Q ss_pred ccCCCEEEEEeCCCcEEEEecCC-------------------------CeEEEEeecccccceEEEEEeecCCcEEEEEc
Q 041325 219 SSDGSLLYSTSWDRTFKIWRTSD-------------------------FRCLESVKNAHDDAINAIVVSKSNDGFVYTGS 273 (450)
Q Consensus 219 ~~~~~~l~~~~~dg~i~iwd~~~-------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 273 (450)
.++|..+++|+.|..|.||+... +.++..+. +|..+|.++.|++ ...+++++
T Consensus 202 ~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~-GHt~~Vs~V~w~d--~~v~yS~S 278 (423)
T KOG0313|consen 202 DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLE-GHTEPVSSVVWSD--ATVIYSVS 278 (423)
T ss_pred cCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEec-ccccceeeEEEcC--CCceEeec
Confidence 99999999999999999999321 22344455 8999999999995 66899999
Q ss_pred CCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeec
Q 041325 274 ADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKG 353 (450)
Q Consensus 274 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 353 (450)
.|.+|+.||+.++. ....+. .+..+.++.++|..++|++|+.|..|++||.+++.- ....+
T Consensus 279 wDHTIk~WDletg~--------~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g----------s~v~~ 339 (423)
T KOG0313|consen 279 WDHTIKVWDLETGG--------LKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG----------SVVSQ 339 (423)
T ss_pred ccceEEEEEeeccc--------ceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCC----------ceeEE
Confidence 99999999998877 444443 457789999999999999999999999999997632 23567
Q ss_pred cccCCccceEEEEEeCC---eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCC
Q 041325 354 ALRGHTKAILCLAVVSN---LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSS 430 (450)
Q Consensus 354 ~~~~~~~~v~~~~~~~~---~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~ 430 (450)
.+.+|.+.|.++.|++. +|++|+.|+++++||+++. ..++..+.+|...|.++.|...+
T Consensus 340 s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~-------k~plydI~~h~DKvl~vdW~~~~----------- 401 (423)
T KOG0313|consen 340 SLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST-------KAPLYDIAGHNDKVLSVDWNEGG----------- 401 (423)
T ss_pred eeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC-------CCcceeeccCCceEEEEeccCCc-----------
Confidence 89999999999999954 9999999999999999984 35889999999999999997665
Q ss_pred ceEEEEEcccCCcEEEEE
Q 041325 431 TSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 431 ~~~~l~s~~~Dg~i~iw~ 448 (450)
++++||.|.+|+|+.
T Consensus 402 ---~IvSGGaD~~l~i~~ 416 (423)
T KOG0313|consen 402 ---LIVSGGADNKLRIFK 416 (423)
T ss_pred ---eEEeccCcceEEEec
Confidence 699999999999985
No 27
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.7e-38 Score=278.64 Aligned_cols=298 Identities=24% Similarity=0.377 Sum_probs=254.5
Q ss_pred ccCCCCCccceeeeEEeecCCCcceEEEEE---eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCce
Q 041325 54 RKQAPAASEHQCSATLKVKGNSSYIPSLAI---AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAV 130 (450)
Q Consensus 54 ~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~---d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 130 (450)
....+...+.++.+.+- |-.+.|..|.| +.++||.++..+.+|+++..+..+. ++.||...|
T Consensus 304 nl~l~d~~~l~i~k~iv--G~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-------------ii~GH~e~v 368 (775)
T KOG0319|consen 304 NLFLYDEDELTIVKQIV--GYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-------------IIPGHTEAV 368 (775)
T ss_pred eEEEEEccccEEehhhc--CCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-------------EEeCchhhe
Confidence 34455677888888888 99999999999 5799999999999999988776654 367999999
Q ss_pred EEEE-Ee-CCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeec
Q 041325 131 KSLV-VL-GDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVH 208 (450)
Q Consensus 131 ~~l~-~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (450)
.++. |+ ++.|+||+.|+++++|.++.+.... .......+
T Consensus 369 lSL~~~~~g~llat~sKD~svilWr~~~~~~~~---------------------------------------~~~a~~~g 409 (775)
T KOG0319|consen 369 LSLDVWSSGDLLATGSKDKSVILWRLNNNCSKS---------------------------------------LCVAQANG 409 (775)
T ss_pred eeeeecccCcEEEEecCCceEEEEEecCCcchh---------------------------------------hhhhhhcc
Confidence 9999 43 4459999999999999996553210 01112337
Q ss_pred CCCceEEEEEccC-CCEEEEEeCCCcEEEEecCCCeEE---EE-----eecccccceEEEEEeecCCcEEEEEcCCCcEE
Q 041325 209 HVDTVSALALSSD-GSLLYSTSWDRTFKIWRTSDFRCL---ES-----VKNAHDDAINAIVVSKSNDGFVYTGSADTKIK 279 (450)
Q Consensus 209 ~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~---~~-----~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 279 (450)
|+..|.+++++.. ...|++++.|+++++|++...+.. .. ....|...|++++++| ++.++++|+.|++.+
T Consensus 410 H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaK 488 (775)
T KOG0319|consen 410 HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAK 488 (775)
T ss_pred cccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEeccccccee
Confidence 9999999999774 468999999999999999762211 11 1237899999999999 566999999999999
Q ss_pred EEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCc
Q 041325 280 VWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT 359 (450)
Q Consensus 280 vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (450)
+|+++... ....+.+|...|+++.|+|..+.+++++.|++|+||.+.+..++ .++.+|.
T Consensus 489 iW~le~~~--------l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSCl-------------kT~eGH~ 547 (775)
T KOG0319|consen 489 IWDLEQLR--------LLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCL-------------KTFEGHT 547 (775)
T ss_pred eecccCce--------EEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceee-------------eeecCcc
Confidence 99997555 88899999999999999999999999999999999999998766 7999999
Q ss_pred cceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEE
Q 041325 360 KAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYS 437 (450)
Q Consensus 360 ~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s 437 (450)
..|....|- +..|++++.||.+++|+++++ .|+..+.+|...|++++.++... +++|
T Consensus 548 ~aVlra~F~~~~~qliS~~adGliKlWnikt~--------eC~~tlD~H~DrvWaL~~~~~~~-------------~~~t 606 (775)
T KOG0319|consen 548 SAVLRASFIRNGKQLISAGADGLIKLWNIKTN--------ECEMTLDAHNDRVWALSVSPLLD-------------MFVT 606 (775)
T ss_pred ceeEeeeeeeCCcEEEeccCCCcEEEEeccch--------hhhhhhhhccceeEEEeecCccc-------------eeEe
Confidence 999999996 569999999999999999985 89999999999999999999999 9999
Q ss_pred cccCCcEEEEE
Q 041325 438 GSLDCEIKIWQ 448 (450)
Q Consensus 438 ~~~Dg~i~iw~ 448 (450)
|+.||.|.+|.
T Consensus 607 gg~Dg~i~~wk 617 (775)
T KOG0319|consen 607 GGGDGRIIFWK 617 (775)
T ss_pred cCCCeEEEEee
Confidence 99999999995
No 28
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.4e-38 Score=257.51 Aligned_cols=265 Identities=23% Similarity=0.381 Sum_probs=230.7
Q ss_pred CccccCCCCCccceeeeEEeecCCCcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCce
Q 041325 51 SSFRKQAPAASEHQCSATLKVKGNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAV 130 (450)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 130 (450)
......++.....++++.|. ||++.|.|+.||.+.|++|+.|.+|+|||+++++++.. +.+|...|
T Consensus 215 rDnTikiWD~n~~~c~~~L~--GHtGSVLCLqyd~rviisGSSDsTvrvWDv~tge~l~t------------lihHceaV 280 (499)
T KOG0281|consen 215 RDNTIKIWDKNSLECLKILT--GHTGSVLCLQYDERVIVSGSSDSTVRVWDVNTGEPLNT------------LIHHCEAV 280 (499)
T ss_pred ccCceEEeccccHHHHHhhh--cCCCcEEeeeccceEEEecCCCceEEEEeccCCchhhH------------Hhhhccee
Confidence 33445677888889999999 99999999999999999999999999999999998877 78999999
Q ss_pred EEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCC
Q 041325 131 KSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHV 210 (450)
Q Consensus 131 ~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (450)
..+.|+++.+++++.|.++.+||+..... ......+.+|.
T Consensus 281 Lhlrf~ng~mvtcSkDrsiaVWdm~sps~----------------------------------------it~rrVLvGHr 320 (499)
T KOG0281|consen 281 LHLRFSNGYMVTCSKDRSIAVWDMASPTD----------------------------------------ITLRRVLVGHR 320 (499)
T ss_pred EEEEEeCCEEEEecCCceeEEEeccCchH----------------------------------------HHHHHHHhhhh
Confidence 99999999999999999999999987621 01122455899
Q ss_pred CceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc
Q 041325 211 DTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 290 (450)
..|+.+.|+ .+++++++.|.+|++|++.++++++.+. +|...|.|+.+. +.++++|+.|.+|++||+..+.
T Consensus 321 AaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~-gHkRGIAClQYr---~rlvVSGSSDntIRlwdi~~G~--- 391 (499)
T KOG0281|consen 321 AAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLN-GHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGA--- 391 (499)
T ss_pred hheeeeccc--cceEEEecCCceEEEEeccceeeehhhh-cccccceehhcc---CeEEEecCCCceEEEEeccccH---
Confidence 999999997 4599999999999999999999999998 999999999885 6699999999999999998887
Q ss_pred cccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN 370 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 370 (450)
+++.+++|+.-|.++.| |.+.|++|..||+|+|||+..+...- ..........+..|++.|..+.|+..
T Consensus 392 -----cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldpr----a~~~~~Cl~~lv~hsgRVFrLQFD~f 460 (499)
T KOG0281|consen 392 -----CLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDPR----APASTLCLRTLVEHSGRVFRLQFDEF 460 (499)
T ss_pred -----HHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCCc----ccccchHHHhhhhccceeEEEeecce
Confidence 89999999999999999 57899999999999999998764210 01112244567789999999999999
Q ss_pred eEEEEeCCCeEEEeeCCCC
Q 041325 371 LLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 371 ~l~s~~~dg~v~iwd~~~~ 389 (450)
.+++++.|.+|.|||+..+
T Consensus 461 qIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 461 QIISSSHDDTILIWDFLNG 479 (499)
T ss_pred EEEeccCCCeEEEEEcCCC
Confidence 9999999999999999875
No 29
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=2.5e-36 Score=253.69 Aligned_cols=274 Identities=21% Similarity=0.335 Sum_probs=236.0
Q ss_pred CcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEE
Q 041325 75 SSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIR 150 (450)
Q Consensus 75 ~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~ 150 (450)
...|++++| +|.+||+|+.||.++||+........ +..|.++|.+|.|+.++ |++++.||++.
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~t-------------l~~HkgPI~slKWnk~G~yilS~~vD~tti 301 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLIST-------------LGQHKGPIFSLKWNKKGTYILSGGVDGTTI 301 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCchhhhh-------------hhccCCceEEEEEcCCCCEEEeccCCccEE
Confidence 358999999 69999999999999999987655322 56899999999999655 99999999999
Q ss_pred EEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeC
Q 041325 151 VWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSW 230 (450)
Q Consensus 151 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 230 (450)
+||..+++. .. .+..|..+...+.|-.+ ..+++++.
T Consensus 302 lwd~~~g~~----------------~q---------------------------~f~~~s~~~lDVdW~~~-~~F~ts~t 337 (524)
T KOG0273|consen 302 LWDAHTGTV----------------KQ---------------------------QFEFHSAPALDVDWQSN-DEFATSST 337 (524)
T ss_pred EEeccCceE----------------EE---------------------------eeeeccCCccceEEecC-ceEeecCC
Confidence 999988832 11 22246666677888754 45899999
Q ss_pred CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEE
Q 041325 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310 (450)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l 310 (450)
|+.|+++.+...+++.++. +|.+.|.++.|+|.+ .+|++++.|++++||+..... ....+.+|...|..+
T Consensus 338 d~~i~V~kv~~~~P~~t~~-GH~g~V~alk~n~tg-~LLaS~SdD~TlkiWs~~~~~--------~~~~l~~Hskei~t~ 407 (524)
T KOG0273|consen 338 DGCIHVCKVGEDRPVKTFI-GHHGEVNALKWNPTG-SLLASCSDDGTLKIWSMGQSN--------SVHDLQAHSKEIYTI 407 (524)
T ss_pred CceEEEEEecCCCcceeee-cccCceEEEEECCCC-ceEEEecCCCeeEeeecCCCc--------chhhhhhhccceeeE
Confidence 9999999999999999999 799999999999854 499999999999999986555 788899999999999
Q ss_pred EEcCCC---------CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCC
Q 041325 311 ALSTDG---------TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDN 379 (450)
Q Consensus 311 ~~~~~~---------~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg 379 (450)
.|+|.| ..+++++.|++|++||+..+.++ ..+..|..+|.+++|+ +.++|+|+.||
T Consensus 408 ~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i-------------~~f~kH~~pVysvafS~~g~ylAsGs~dg 474 (524)
T KOG0273|consen 408 KWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPI-------------HTLMKHQEPVYSVAFSPNGRYLASGSLDG 474 (524)
T ss_pred eecCCCCccCCCcCCceEEEeecCCeEEEEEccCCcee-------------EeeccCCCceEEEEecCCCcEEEecCCCC
Confidence 999954 47999999999999999999876 6788999999999999 55999999999
Q ss_pred eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 380 TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 380 ~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
.|.+|+.+++ +.++.+.+ .+.|..|+|+.++. +|..+-.||.+++-|+|
T Consensus 475 ~V~iws~~~~--------~l~~s~~~-~~~Ifel~Wn~~G~-------------kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 475 CVHIWSTKTG--------KLVKSYQG-TGGIFELCWNAAGD-------------KLGACASDGSVCVLDLR 523 (524)
T ss_pred eeEeccccch--------heeEeecC-CCeEEEEEEcCCCC-------------EEEEEecCCCceEEEec
Confidence 9999999985 66666664 56699999999999 88888899999999986
No 30
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=3.6e-38 Score=265.66 Aligned_cols=292 Identities=17% Similarity=0.301 Sum_probs=243.0
Q ss_pred CCccceeeeEEeecCCCcceEEEEE---eCCEEEEeeCCCcEEEecCCC-CCceeeeecCCCCcceeEEecCCCceEEEE
Q 041325 59 AASEHQCSATLKVKGNSSYIPSLAI---AGKLLYGGSSNGEIRAWNRDP-NNYVNITSTDVGDHANVVATGNGDAVKSLV 134 (450)
Q Consensus 59 ~~~~~~~~~~l~~~~h~~~v~~~~~---d~~~l~tgs~dg~v~vw~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 134 (450)
+.-+.+.++++. ||+..|+++.| .+.+|++|+.|+.|+||++.. +.++.. +.+|..+|.+++
T Consensus 200 c~~Pkk~~~~~~--gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrt------------f~gH~k~Vrd~~ 265 (503)
T KOG0282|consen 200 CYLPKKLSHNLS--GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRT------------FKGHRKPVRDAS 265 (503)
T ss_pred eeccHhheeecc--CCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehh------------hhcchhhhhhhh
Confidence 334556777777 99999999999 699999999999999999877 666665 889999999999
Q ss_pred EeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCc
Q 041325 135 VLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDT 212 (450)
Q Consensus 135 ~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (450)
|+.++ +++++.|+.|++||++++++ +..+. -...
T Consensus 266 ~s~~g~~fLS~sfD~~lKlwDtETG~~----------------~~~f~----------------------------~~~~ 301 (503)
T KOG0282|consen 266 FNNCGTSFLSASFDRFLKLWDTETGQV----------------LSRFH----------------------------LDKV 301 (503)
T ss_pred ccccCCeeeeeecceeeeeeccccceE----------------EEEEe----------------------------cCCC
Confidence 99776 99999999999999999943 33332 2336
Q ss_pred eEEEEEccCC-CEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc
Q 041325 213 VSALALSSDG-SLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN 291 (450)
Q Consensus 213 v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 291 (450)
+.|+.|+|++ +.+++|+.|+.|+.||+++++.++.+. .|-+.|..+.|.+. +..+++.+.|+.+++|+.+.+-
T Consensus 302 ~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd-~hLg~i~~i~F~~~-g~rFissSDdks~riWe~~~~v---- 375 (503)
T KOG0282|consen 302 PTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYD-RHLGAILDITFVDE-GRRFISSSDDKSVRIWENRIPV---- 375 (503)
T ss_pred ceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHH-hhhhheeeeEEccC-CceEeeeccCccEEEEEcCCCc----
Confidence 8999999987 899999999999999999999999888 89999999999984 4489999999999999986654
Q ss_pred ccchhhh-hHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccc--eEEEEEe
Q 041325 292 KKHSLVQ-TLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA--ILCLAVV 368 (450)
Q Consensus 292 ~~~~~~~-~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~ 368 (450)
.++ ....+.....++..+|+++++++-+.|+.|.++.+...- .+.....+.+|..+ -..+.|+
T Consensus 376 ----~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~----------r~nkkK~feGh~vaGys~~v~fS 441 (503)
T KOG0282|consen 376 ----PIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPF----------RLNKKKRFEGHSVAGYSCQVDFS 441 (503)
T ss_pred ----cchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccc----------ccCHhhhhcceeccCceeeEEEc
Confidence 222 222344567789999999999999999999999976422 12234567777644 3455666
Q ss_pred --CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEE
Q 041325 369 --SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKI 446 (450)
Q Consensus 369 --~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~i 446 (450)
+.+|++|+.||.+.+||.++ .+.+..+++|.+++..+.|+|.... .+||+|.||.|++
T Consensus 442 pDG~~l~SGdsdG~v~~wdwkt--------~kl~~~lkah~~~ci~v~wHP~e~S------------kvat~~w~G~Iki 501 (503)
T KOG0282|consen 442 PDGRTLCSGDSDGKVNFWDWKT--------TKLVSKLKAHDQPCIGVDWHPVEPS------------KVATCGWDGLIKI 501 (503)
T ss_pred CCCCeEEeecCCccEEEeechh--------hhhhhccccCCcceEEEEecCCCcc------------eeEecccCceeEe
Confidence 45999999999999999997 4788899999999999999998775 8999999999999
Q ss_pred EE
Q 041325 447 WQ 448 (450)
Q Consensus 447 w~ 448 (450)
|+
T Consensus 502 wd 503 (503)
T KOG0282|consen 502 WD 503 (503)
T ss_pred cC
Confidence 96
No 31
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.8e-36 Score=244.23 Aligned_cols=330 Identities=13% Similarity=0.170 Sum_probs=256.9
Q ss_pred eeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--
Q 041325 64 QCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 139 (450)
.-+.+|. .|...|.+++. +.++++||+.|..-.+|+..++..... +.+|+..|+++.|+-++
T Consensus 55 dS~~tF~--~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~e------------ltgHKDSVt~~~Fshdgtl 120 (399)
T KOG0296|consen 55 DSLVTFD--KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGE------------LTGHKDSVTCCSFSHDGTL 120 (399)
T ss_pred cceeehh--hcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeE------------ecCCCCceEEEEEccCceE
Confidence 4566777 99999999999 689999999999999999999985555 78999999999999666
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCC-CcceeEeeecCceEEEeecc----eeeeecCCCceE
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTL-NDRFTKCFLANNYVQVRRHK----KCTWVHHVDTVS 214 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~ 214 (450)
|+||+.+|.|++|+..++.......... .-+..+.-. ...+..+...++.+=+++.+ ...+.+|..+++
T Consensus 121 LATGdmsG~v~v~~~stg~~~~~~~~e~------~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct 194 (399)
T KOG0296|consen 121 LATGDMSGKVLVFKVSTGGEQWKLDQEV------EDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCT 194 (399)
T ss_pred EEecCCCccEEEEEcccCceEEEeeccc------CceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcc
Confidence 9999999999999999986543332110 111111111 23344444455555554433 356789999999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccc
Q 041325 215 ALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKH 294 (450)
Q Consensus 215 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 294 (450)
+=.|.|+|+.++++..||+|++||+.+++++..+.........++.++. ....++.|..++.+++-+..+++.......
T Consensus 195 ~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~-~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~ 273 (399)
T KOG0296|consen 195 CGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNL-AGSTLTKGNSEGVACGVNNGSGKVVNCNNG 273 (399)
T ss_pred cccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccc-ccceeEeccCCccEEEEccccceEEEecCC
Confidence 9999999999999999999999999999999988755566677888775 334788899999998888777663221111
Q ss_pred hhhhhHhhcccc---eEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC-C
Q 041325 295 SLVQTLEKHKSA---VTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS-N 370 (450)
Q Consensus 295 ~~~~~~~~~~~~---i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 370 (450)
........+... |.++.++..-.+.|+|+.||+|.|||+...+. +..-.|...|+.+.|.+ .
T Consensus 274 ~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~--------------R~~c~he~~V~~l~w~~t~ 339 (399)
T KOG0296|consen 274 TVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL--------------RHICEHEDGVTKLKWLNTD 339 (399)
T ss_pred CCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh--------------heeccCCCceEEEEEcCcc
Confidence 111111123333 44455555667899999999999999986542 34456888899999998 6
Q ss_pred eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 371 LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 371 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+|++++.+|.|+.||.++| +++..+.+|...|.+++++|+.+ +++|+|.|++.+||++
T Consensus 340 ~l~t~c~~g~v~~wDaRtG--------~l~~~y~GH~~~Il~f~ls~~~~-------------~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 340 YLLTACANGKVRQWDARTG--------QLKFTYTGHQMGILDFALSPQKR-------------LVVTVSDDNTALVFEV 397 (399)
T ss_pred hheeeccCceEEeeecccc--------ceEEEEecCchheeEEEEcCCCc-------------EEEEecCCCeEEEEec
Confidence 9999999999999999986 88999999999999999999999 9999999999999986
No 32
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.1e-35 Score=272.68 Aligned_cols=291 Identities=28% Similarity=0.521 Sum_probs=240.6
Q ss_pred ccceeeeEEeecCC-CcceEEEEE--eCCEEEEeeCCCcEEEecCCCCC--ceeeeecCCCCcceeEEecCCCceEEEEE
Q 041325 61 SEHQCSATLKVKGN-SSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNN--YVNITSTDVGDHANVVATGNGDAVKSLVV 135 (450)
Q Consensus 61 ~~~~~~~~l~~~~h-~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 135 (450)
..+...+.+. +| ...|+++.| ||+++++++.|+.+++|+..... .... +.+|...|.+++|
T Consensus 146 ~~~~~~~~~~--~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~------------l~~h~~~v~~~~f 211 (456)
T KOG0266|consen 146 RVFSLEQTLA--GHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRE------------LSGHTRGVSDVAF 211 (456)
T ss_pred ccceeeeeec--ccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcc------------ccccccceeeeEE
Confidence 3344455554 55 789999999 89999999999999999996665 2222 4689999999999
Q ss_pred eCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCce
Q 041325 136 LGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTV 213 (450)
Q Consensus 136 ~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 213 (450)
+++. +++++.|++|++||+.... .....+.+|...|
T Consensus 212 s~d~~~l~s~s~D~tiriwd~~~~~------------------------------------------~~~~~l~gH~~~v 249 (456)
T KOG0266|consen 212 SPDGSYLLSGSDDKTLRIWDLKDDG------------------------------------------RNLKTLKGHSTYV 249 (456)
T ss_pred CCCCcEEEEecCCceEEEeeccCCC------------------------------------------eEEEEecCCCCce
Confidence 9887 9999999999999994331 1233455899999
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc
Q 041325 214 SALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 214 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 293 (450)
++++|+|+++++++|+.|++|+|||+++++++..+. .|.+.|.+++|.++ ..+|++++.|+.|++||+.++...
T Consensus 250 ~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~-~hs~~is~~~f~~d-~~~l~s~s~d~~i~vwd~~~~~~~---- 323 (456)
T KOG0266|consen 250 TSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLK-GHSDGISGLAFSPD-GNLLVSASYDGTIRVWDLETGSKL---- 323 (456)
T ss_pred EEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeee-ccCCceEEEEECCC-CCEEEEcCCCccEEEEECCCCcee----
Confidence 999999999999999999999999999999999999 89999999999984 458999999999999999876511
Q ss_pred chhhhhHhhccc--ceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEE---EEe
Q 041325 294 HSLVQTLEKHKS--AVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL---AVV 368 (450)
Q Consensus 294 ~~~~~~~~~~~~--~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~ 368 (450)
+...+..+.. .+++++|+|++.+|++++.|+.+++||+..++.. ....+|...+.|+ ...
T Consensus 324 --~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~-------------~~~~~~~~~~~~~~~~~~~ 388 (456)
T KOG0266|consen 324 --CLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSV-------------GTYTGHSNLVRCIFSPTLS 388 (456)
T ss_pred --eeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcce-------------eeecccCCcceeEeccccc
Confidence 2344444444 5999999999999999999999999999988755 4556666544333 212
Q ss_pred --CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCC-CcceEEEEEEecCCCCCCCCCCCCceEEEEEcc--cCCc
Q 041325 369 --SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGH-RRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGS--LDCE 443 (450)
Q Consensus 369 --~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~--~Dg~ 443 (450)
+.++++|+.|+.|++||+.++ ..+..+.+| ...+..+.+++... ++++++ .|+.
T Consensus 389 ~~~~~i~sg~~d~~v~~~~~~s~--------~~~~~l~~h~~~~~~~~~~~~~~~-------------~~~s~s~~~d~~ 447 (456)
T KOG0266|consen 389 TGGKLIYSGSEDGSVYVWDSSSG--------GILQRLEGHSKAAVSDLSSHPTEN-------------LIASSSFEGDGL 447 (456)
T ss_pred CCCCeEEEEeCCceEEEEeCCcc--------chhhhhcCCCCCceeccccCCCcC-------------eeeecCcCCCce
Confidence 569999999999999999974 677888899 89999999999999 899998 7999
Q ss_pred EEEEEe
Q 041325 444 IKIWQI 449 (450)
Q Consensus 444 i~iw~l 449 (450)
|++|..
T Consensus 448 ~~~w~~ 453 (456)
T KOG0266|consen 448 IRLWKY 453 (456)
T ss_pred EEEecC
Confidence 999974
No 33
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=2e-36 Score=239.33 Aligned_cols=280 Identities=21% Similarity=0.372 Sum_probs=233.9
Q ss_pred cccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEE
Q 041325 12 RRNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLY 89 (450)
Q Consensus 12 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~ 89 (450)
.++-...|+|++.++.+++.+-.+ .++..-+....+.+. --..+|..++| +|+++|
T Consensus 56 ~Ki~~~~ws~Dsr~ivSaSqDGkl--------------------IvWDs~TtnK~haip--l~s~WVMtCA~sPSg~~VA 113 (343)
T KOG0286|consen 56 NKIYAMDWSTDSRRIVSASQDGKL--------------------IVWDSFTTNKVHAIP--LPSSWVMTCAYSPSGNFVA 113 (343)
T ss_pred cceeeeEecCCcCeEEeeccCCeE--------------------EEEEcccccceeEEe--cCceeEEEEEECCCCCeEE
Confidence 367778888999888887665544 334444445666666 56789999999 899999
Q ss_pred EeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEEEcCCCceeEEeccCcc
Q 041325 90 GGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVWKIDNNTSAYYSTSGKL 168 (450)
Q Consensus 90 tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 168 (450)
.|+.|+...||++.+...... ....-.+.+|++.+.|+.|.+|. |++++.|.+..+||+++++
T Consensus 114 cGGLdN~Csiy~ls~~d~~g~------~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~---------- 177 (343)
T KOG0286|consen 114 CGGLDNKCSIYPLSTRDAEGN------VRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQ---------- 177 (343)
T ss_pred ecCcCceeEEEeccccccccc------ceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccce----------
Confidence 999999999999985521111 01112378999999999999887 9999999999999999983
Q ss_pred cccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCeEEEE
Q 041325 169 KNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSDFRCLES 247 (450)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~ 247 (450)
....+.+|.+.|.+++++| +++.+++|+-|+..++||++.+.+.+.
T Consensus 178 ---------------------------------~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qt 224 (343)
T KOG0286|consen 178 ---------------------------------QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQT 224 (343)
T ss_pred ---------------------------------EEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEe
Confidence 3345568999999999999 999999999999999999999999999
Q ss_pred eecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhH--hhcccceEEEEEcCCCCEEEEeeCC
Q 041325 248 VKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTL--EKHKSAVTALALSTDGTVLYSGACD 325 (450)
Q Consensus 248 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~i~~l~~~~~~~~l~~g~~d 325 (450)
|. +|...|+++.|.|++. -+++|+.|+..++||++..+ .+..+ .....+|++++|+..|++|++|..|
T Consensus 225 F~-ghesDINsv~ffP~G~-afatGSDD~tcRlyDlRaD~--------~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d 294 (343)
T KOG0286|consen 225 FE-GHESDINSVRFFPSGD-AFATGSDDATCRLYDLRADQ--------ELAVYSHDSIICGITSVAFSKSGRLLFAGYDD 294 (343)
T ss_pred ec-ccccccceEEEccCCC-eeeecCCCceeEEEeecCCc--------EEeeeccCcccCCceeEEEcccccEEEeeecC
Confidence 99 9999999999999544 79999999999999998865 22222 2345689999999999999999999
Q ss_pred CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEee
Q 041325 326 RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWR 385 (450)
Q Consensus 326 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd 385 (450)
..+.+||.-.++.+ ..+.+|...|.|+...++ -+++|+.|..+|||.
T Consensus 295 ~~c~vWDtlk~e~v-------------g~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 295 FTCNVWDTLKGERV-------------GVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CceeEeeccccceE-------------EEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 99999999888755 678899999999999866 899999999999994
No 34
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=4.9e-35 Score=288.45 Aligned_cols=299 Identities=15% Similarity=0.192 Sum_probs=228.3
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC---eEEEEeCCC
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD---KLFSAHQDH 147 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~l~s~~~dg 147 (450)
+|...|++++| ++++||+|+.||.|+||+......... ........+ .+...|.+++|++. .|++++.||
T Consensus 481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~----~~~~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg 555 (793)
T PLN00181 481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGR----DIHYPVVEL-ASRSKLSGICWNSYIKSQVASSNFEG 555 (793)
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccc----ccccceEEe-cccCceeeEEeccCCCCEEEEEeCCC
Confidence 69999999999 799999999999999999764211000 000011122 33468999999853 499999999
Q ss_pred eEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEEE
Q 041325 148 KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLY 226 (450)
Q Consensus 148 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~ 226 (450)
+|++||+.+++ . ...+.+|.+.|++++|+| ++.+|+
T Consensus 556 ~v~lWd~~~~~----------------~---------------------------~~~~~~H~~~V~~l~~~p~~~~~L~ 592 (793)
T PLN00181 556 VVQVWDVARSQ----------------L---------------------------VTEMKEHEKRVWSIDYSSADPTLLA 592 (793)
T ss_pred eEEEEECCCCe----------------E---------------------------EEEecCCCCCEEEEEEcCCCCCEEE
Confidence 99999998762 1 123346999999999997 789999
Q ss_pred EEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccc
Q 041325 227 STSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSA 306 (450)
Q Consensus 227 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 306 (450)
+|+.||.|++||+.++..+..+. +...+.++.|.+....++++|+.||.|++||++... .....+.+|...
T Consensus 593 Sgs~Dg~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~-------~~~~~~~~h~~~ 663 (793)
T PLN00181 593 SGSDDGSVKLWSINQGVSIGTIK--TKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPK-------LPLCTMIGHSKT 663 (793)
T ss_pred EEcCCCEEEEEECCCCcEEEEEe--cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCC-------ccceEecCCCCC
Confidence 99999999999999998888886 346899999976566789999999999999997643 134455689999
Q ss_pred eEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEe
Q 041325 307 VTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIW 384 (450)
Q Consensus 307 i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iw 384 (450)
|.++.|. ++.+|++++.|+.|++||++.+... ........+.+|...+.+++|+ +.+|++|+.|+.|++|
T Consensus 664 V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~-------~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw 735 (793)
T PLN00181 664 VSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG-------INETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVY 735 (793)
T ss_pred EEEEEEe-CCCEEEEEECCCEEEEEeCCCCccc-------cCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEE
Confidence 9999997 7889999999999999999753200 0011335677899989888887 4599999999999999
Q ss_pred eCCCCccccC---CCceeE--EEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 385 RRSSSVTDHQ---KGYSCL--AVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 385 d~~~~~~~~~---~~~~~~--~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+......... .....+ .....|...|.+++|++++. .|++|+.||.|+||+|
T Consensus 736 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~-------------~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 736 HKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSS-------------TLVAANSTGNIKILEM 792 (793)
T ss_pred ECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCC-------------eEEEecCCCcEEEEec
Confidence 9764311000 000000 11234667899999999999 9999999999999997
No 35
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.6e-37 Score=248.77 Aligned_cols=257 Identities=23% Similarity=0.429 Sum_probs=228.6
Q ss_pred CccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCC-CceeeeecCCCCcceeEEecCC
Q 041325 51 SSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPN-NYVNITSTDVGDHANVVATGNG 127 (450)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~-~~~~~~~~~~~~~~~~~~~~h~ 127 (450)
.......+...++++.+.|+ ||.+.|..++| .|++||+++.|=.+.+||.++. ++.+. +.+|.
T Consensus 128 ~d~tikv~D~~tg~~e~~Lr--GHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks------------~~gh~ 193 (406)
T KOG0295|consen 128 EDATIKVFDTETGELERSLR--GHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKS------------LIGHE 193 (406)
T ss_pred CCceEEEEEccchhhhhhhh--ccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHH------------hcCcc
Confidence 45667778888999999999 99999999999 5999999999999999998763 33332 56899
Q ss_pred CceEEEEEeCC--eEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceee
Q 041325 128 DAVKSLVVLGD--KLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCT 205 (450)
Q Consensus 128 ~~v~~l~~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (450)
..|.+++|-|. .+++++.|.+|+.|++.++ .++.+++
T Consensus 194 h~vS~V~f~P~gd~ilS~srD~tik~We~~tg----------------~cv~t~~------------------------- 232 (406)
T KOG0295|consen 194 HGVSSVFFLPLGDHILSCSRDNTIKAWECDTG----------------YCVKTFP------------------------- 232 (406)
T ss_pred cceeeEEEEecCCeeeecccccceeEEecccc----------------eeEEecc-------------------------
Confidence 99999999854 4999999999999999999 5555555
Q ss_pred eecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecC--------------CcEEEE
Q 041325 206 WVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSN--------------DGFVYT 271 (450)
Q Consensus 206 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--------------~~~l~~ 271 (450)
+|...|..+..+.||.++++++.|.+|++|-+.++++...++ .|+.+|.+++|.|.. ..++.+
T Consensus 233 --~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR-~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s 309 (406)
T KOG0295|consen 233 --GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELR-EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGS 309 (406)
T ss_pred --CchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhh-ccccceEEEEecccccCcchhhccCCCCCccEEEe
Confidence 688899999999999999999999999999999998888888 899999999998732 137999
Q ss_pred EcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceee
Q 041325 272 GSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVL 351 (450)
Q Consensus 272 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 351 (450)
++.|++|++||+.++. ++.++.+|.+.|..++|+|.|+||+++.+|+++++||++++++.
T Consensus 310 ~SrDktIk~wdv~tg~--------cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cm------------ 369 (406)
T KOG0295|consen 310 GSRDKTIKIWDVSTGM--------CLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCM------------ 369 (406)
T ss_pred ecccceEEEEeccCCe--------EEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceee------------
Confidence 9999999999998887 88999999999999999999999999999999999999998866
Q ss_pred eccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeC
Q 041325 352 KGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRR 386 (450)
Q Consensus 352 ~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~ 386 (450)
..+..|..-++++.|..+ ++++|+-|..+++|.-
T Consensus 370 -k~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 370 -KTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred -eccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 677789999999999854 9999999999999963
No 36
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.1e-36 Score=259.07 Aligned_cols=280 Identities=23% Similarity=0.386 Sum_probs=242.8
Q ss_pred eEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEE
Q 041325 67 ATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFS 142 (450)
Q Consensus 67 ~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s 142 (450)
+++. .|...|.++.+ ...+++++-.+|.|.|||.++...+.. +.-..-+|.+..|-+.. +++
T Consensus 7 rk~~--~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVks------------feV~~~PvRa~kfiaRknWiv~ 72 (794)
T KOG0276|consen 7 RKFQ--SRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKS------------FEVSEVPVRAAKFIARKNWIVT 72 (794)
T ss_pred hHhh--ccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeee------------eeecccchhhheeeeccceEEE
Confidence 3445 78999999999 689999999999999999999988877 44556789999998655 999
Q ss_pred EeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCC
Q 041325 143 AHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDG 222 (450)
Q Consensus 143 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 222 (450)
|+.|..|++|+.++. + +...+..|.+.|++++.+|..
T Consensus 73 GsDD~~IrVfnynt~----------------e---------------------------kV~~FeAH~DyIR~iavHPt~ 109 (794)
T KOG0276|consen 73 GSDDMQIRVFNYNTG----------------E---------------------------KVKTFEAHSDYIRSIAVHPTL 109 (794)
T ss_pred ecCCceEEEEecccc----------------e---------------------------eeEEeeccccceeeeeecCCC
Confidence 999999999999998 2 333455799999999999999
Q ss_pred CEEEEEeCCCcEEEEecCCC-eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHh
Q 041325 223 SLLYSTSWDRTFKIWRTSDF-RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLE 301 (450)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 301 (450)
.+++++++|-+|++||.+.. .+.+.+. +|...|++++|+|.+.+.+++++-|++|++|.+.... +..+++
T Consensus 110 P~vLtsSDDm~iKlW~we~~wa~~qtfe-GH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~--------~nfTl~ 180 (794)
T KOG0276|consen 110 PYVLTSSDDMTIKLWDWENEWACEQTFE-GHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPH--------PNFTLE 180 (794)
T ss_pred CeEEecCCccEEEEeeccCceeeeeEEc-CcceEEEEEEecCCCccceeeeeccccEEEEEcCCCC--------Cceeee
Confidence 99999999999999999875 4556666 9999999999999999999999999999999996655 788899
Q ss_pred hcccceEEEEEcCCC--CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeC
Q 041325 302 KHKSAVTALALSTDG--TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSS 377 (450)
Q Consensus 302 ~~~~~i~~l~~~~~~--~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~ 377 (450)
+|...|+++.|-+.| .+|++|+.|..|+|||..+..|+ +++.+|...|.++.|++. .+++|+.
T Consensus 181 gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV-------------~TLeGHt~Nvs~v~fhp~lpiiisgsE 247 (794)
T KOG0276|consen 181 GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCV-------------QTLEGHTNNVSFVFFHPELPIIISGSE 247 (794)
T ss_pred ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHH-------------HHhhcccccceEEEecCCCcEEEEecC
Confidence 999999999998744 69999999999999999998866 899999999999999987 8999999
Q ss_pred CCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEE
Q 041325 378 DNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKI 446 (450)
Q Consensus 378 dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~i 446 (450)
||++|||+..+ ++....+.-.-..|++++-.+.+. .++.|.++|.|.+
T Consensus 248 DGTvriWhs~T--------y~lE~tLn~gleRvW~I~~~k~~~-------------~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 248 DGTVRIWNSKT--------YKLEKTLNYGLERVWCIAAHKGDG-------------KIAVGFDEGSVTV 295 (794)
T ss_pred CccEEEecCcc--------eehhhhhhcCCceEEEEeecCCCC-------------eEEEeccCCcEEE
Confidence 99999999776 455555655667899999888877 7888887777653
No 37
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=5.2e-37 Score=253.27 Aligned_cols=239 Identities=23% Similarity=0.404 Sum_probs=209.1
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCe
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHK 148 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~ 148 (450)
+|..+|+++.| +|.++++|+.+|.|++|+..-...... ...|...|++++|+|+. +++++.||+
T Consensus 136 aHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~------------~ahh~eaIRdlafSpnDskF~t~SdDg~ 203 (464)
T KOG0284|consen 136 AHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKII------------QAHHAEAIRDLAFSPNDSKFLTCSDDGT 203 (464)
T ss_pred hhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHh------------hHhhhhhhheeccCCCCceeEEecCCCe
Confidence 99999999999 899999999999999998765443322 23555899999999766 999999999
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST 228 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 228 (450)
|+|||....+ +...+.+|.-.|.+++|+|...++++|
T Consensus 204 ikiWdf~~~k-------------------------------------------ee~vL~GHgwdVksvdWHP~kgLiasg 240 (464)
T KOG0284|consen 204 IKIWDFRMPK-------------------------------------------EERVLRGHGWDVKSVDWHPTKGLIASG 240 (464)
T ss_pred EEEEeccCCc-------------------------------------------hhheeccCCCCcceeccCCccceeEEc
Confidence 9999998762 333456899999999999999999999
Q ss_pred eCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceE
Q 041325 229 SWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVT 308 (450)
Q Consensus 229 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 308 (450)
++|..|++||.+++.++.++. .|+..|..+.|++.. ++|++++.|..++++|+++.+ .+..+++|+..++
T Consensus 241 skDnlVKlWDprSg~cl~tlh-~HKntVl~~~f~~n~-N~Llt~skD~~~kv~DiR~mk--------El~~~r~Hkkdv~ 310 (464)
T KOG0284|consen 241 SKDNLVKLWDPRSGSCLATLH-GHKNTVLAVKFNPNG-NWLLTGSKDQSCKVFDIRTMK--------ELFTYRGHKKDVT 310 (464)
T ss_pred cCCceeEeecCCCcchhhhhh-hccceEEEEEEcCCC-CeeEEccCCceEEEEehhHhH--------HHHHhhcchhhhe
Confidence 999999999999999999998 899999999999965 799999999999999998655 7889999999999
Q ss_pred EEEEcC-CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEee
Q 041325 309 ALALST-DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWR 385 (450)
Q Consensus 309 ~l~~~~-~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd 385 (450)
+++|+| ...+|.+|+.||.|..|.+...+++ ...-.+|...|++++|+ |.+|++|+.|.++++|.
T Consensus 311 ~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~------------~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~ 378 (464)
T KOG0284|consen 311 SLTWHPLNESLFTSGGSDGSVVHWVVGLEEPL------------GEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT 378 (464)
T ss_pred eeccccccccceeeccCCCceEEEeccccccc------------cCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence 999999 6678999999999999999844433 23456799999999999 67999999999999997
Q ss_pred CCC
Q 041325 386 RSS 388 (450)
Q Consensus 386 ~~~ 388 (450)
...
T Consensus 379 r~r 381 (464)
T KOG0284|consen 379 RNR 381 (464)
T ss_pred cCC
Confidence 553
No 38
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.8e-36 Score=244.98 Aligned_cols=242 Identities=24% Similarity=0.429 Sum_probs=216.9
Q ss_pred eeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEE
Q 041325 120 NVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQ 197 (450)
Q Consensus 120 ~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (450)
..++.+|.+.|.|+++.|.. +++|+.|++|+|||+.+++
T Consensus 144 ~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~--------------------------------------- 184 (460)
T KOG0285|consen 144 YRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQ--------------------------------------- 184 (460)
T ss_pred hhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCe---------------------------------------
Confidence 34578999999999999766 9999999999999999983
Q ss_pred EeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCc
Q 041325 198 VRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTK 277 (450)
Q Consensus 198 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 277 (450)
....+.+|...|..+++++...|+++++.|+.|+.||++..+.++.+. +|.+.|.+++.+|..+ .|++|+.|..
T Consensus 185 ----LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~Yh-GHlS~V~~L~lhPTld-vl~t~grDst 258 (460)
T KOG0285|consen 185 ----LKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYH-GHLSGVYCLDLHPTLD-VLVTGGRDST 258 (460)
T ss_pred ----EEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhc-cccceeEEEeccccce-eEEecCCcce
Confidence 233455899999999999999999999999999999999999999988 9999999999999555 8999999999
Q ss_pred EEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccC
Q 041325 278 IKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG 357 (450)
Q Consensus 278 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (450)
+++||+++.. .+..+.+|..+|.++.+.|-...+++|+.|++|++||++.++.. ..+..
T Consensus 259 ~RvWDiRtr~--------~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~-------------~tlt~ 317 (460)
T KOG0285|consen 259 IRVWDIRTRA--------SVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTM-------------ITLTH 317 (460)
T ss_pred EEEeeecccc--------eEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCcee-------------Eeeec
Confidence 9999998877 78899999999999999997888999999999999999998754 57788
Q ss_pred CccceEEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEE
Q 041325 358 HTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLV 435 (450)
Q Consensus 358 ~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l 435 (450)
|...|.+++.+++ .+++++.|. |+-|++..+ ..+..+.+|...|++++...|+ ++
T Consensus 318 hkksvral~lhP~e~~fASas~dn-ik~w~~p~g--------~f~~nlsgh~~iintl~~nsD~--------------v~ 374 (460)
T KOG0285|consen 318 HKKSVRALCLHPKENLFASASPDN-IKQWKLPEG--------EFLQNLSGHNAIINTLSVNSDG--------------VL 374 (460)
T ss_pred ccceeeEEecCCchhhhhccCCcc-ceeccCCcc--------chhhccccccceeeeeeeccCc--------------eE
Confidence 9999999999976 777777775 999999875 6677799999999999998887 69
Q ss_pred EEcccCCcEEEEEeC
Q 041325 436 YSGSLDCEIKIWQIR 450 (450)
Q Consensus 436 ~s~~~Dg~i~iw~l~ 450 (450)
++|++.|.+.+||-|
T Consensus 375 ~~G~dng~~~fwdwk 389 (460)
T KOG0285|consen 375 VSGGDNGSIMFWDWK 389 (460)
T ss_pred EEcCCceEEEEEecC
Confidence 999999999999964
No 39
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-35 Score=264.79 Aligned_cols=287 Identities=19% Similarity=0.358 Sum_probs=245.2
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCe
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHK 148 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~ 148 (450)
..+..|..++| ...+++++-..|.|++||.+-+.++.. +..|.++|..++|+|.. +++||.|-.
T Consensus 7 skSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~r------------FdeHdGpVRgv~FH~~qplFVSGGDDyk 74 (1202)
T KOG0292|consen 7 SKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDR------------FDEHDGPVRGVDFHPTQPLFVSGGDDYK 74 (1202)
T ss_pred cccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhh------------hhccCCccceeeecCCCCeEEecCCccE
Confidence 56778999999 688999999999999999998887766 77999999999999888 999999999
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST 228 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 228 (450)
|++|+..+. .++.+ +.+|-+.|+.+.|++.-.+++++
T Consensus 75 IkVWnYk~r----------------rclft---------------------------L~GHlDYVRt~~FHheyPWIlSA 111 (1202)
T KOG0292|consen 75 IKVWNYKTR----------------RCLFT---------------------------LLGHLDYVRTVFFHHEYPWILSA 111 (1202)
T ss_pred EEEEecccc----------------eehhh---------------------------hccccceeEEeeccCCCceEEEc
Confidence 999999988 34433 44899999999999999999999
Q ss_pred eCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc-----------------
Q 041325 229 SWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN----------------- 291 (450)
Q Consensus 229 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~----------------- 291 (450)
++|.+|+||+..+++++..+. +|...|+|..|+|..+ ++++++-|.+||+||+..-+....
T Consensus 112 SDDQTIrIWNwqsr~~iavlt-GHnHYVMcAqFhptED-lIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~d 189 (1202)
T KOG0292|consen 112 SDDQTIRIWNWQSRKCIAVLT-GHNHYVMCAQFHPTED-LIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSD 189 (1202)
T ss_pred cCCCeEEEEeccCCceEEEEe-cCceEEEeeccCCccc-eEEEecccceEEEEeecchhccCCCCCCchhhhhccccchh
Confidence 999999999999999999999 9999999999999655 999999999999999854221100
Q ss_pred ----ccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEE
Q 041325 292 ----KKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV 367 (450)
Q Consensus 292 ----~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 367 (450)
........+++|...|+-++|+|.-.+|++|+.|..|++|.+...+.- ......+|.+.|.++-|
T Consensus 190 Lfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaW-----------EvDtcrgH~nnVssvlf 258 (1202)
T KOG0292|consen 190 LFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAW-----------EVDTCRGHYNNVSSVLF 258 (1202)
T ss_pred hcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccce-----------eehhhhcccCCcceEEe
Confidence 011223456789999999999999999999999999999999865422 44678899999999999
Q ss_pred eC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEE
Q 041325 368 VS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIK 445 (450)
Q Consensus 368 ~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~ 445 (450)
++ +++++.|.|++|+|||+.. ...+..+....+.-+.++.+|..+ |+.++.|+-+.
T Consensus 259 hp~q~lIlSnsEDksirVwDm~k--------Rt~v~tfrrendRFW~laahP~lN--------------LfAAgHDsGm~ 316 (1202)
T KOG0292|consen 259 HPHQDLILSNSEDKSIRVWDMTK--------RTSVQTFRRENDRFWILAAHPELN--------------LFAAGHDSGMI 316 (1202)
T ss_pred cCccceeEecCCCccEEEEeccc--------ccceeeeeccCCeEEEEEecCCcc--------------eeeeecCCceE
Confidence 98 6999999999999999986 367888877788899999999998 44455666677
Q ss_pred EEEe
Q 041325 446 IWQI 449 (450)
Q Consensus 446 iw~l 449 (450)
+|.+
T Consensus 317 VFkl 320 (1202)
T KOG0292|consen 317 VFKL 320 (1202)
T ss_pred EEEE
Confidence 7776
No 40
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=3.8e-36 Score=232.61 Aligned_cols=278 Identities=22% Similarity=0.392 Sum_probs=231.2
Q ss_pred EeecCCCcceEEEEE-----eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EE
Q 041325 69 LKVKGNSSYIPSLAI-----AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LF 141 (450)
Q Consensus 69 l~~~~h~~~v~~~~~-----d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~ 141 (450)
+..+||..+|..++| +|-+|++++.||.-.+-+-+++.-+-. +.+|.+.|++...+.+. -+
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigt------------feghkgavw~~~l~~na~~aa 75 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGT------------FEGHKGAVWSATLNKNATRAA 75 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEe------------eeccCcceeeeecCchhhhhh
Confidence 445699999999999 689999999999999988888887766 88999999999998766 78
Q ss_pred EEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC
Q 041325 142 SAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD 221 (450)
Q Consensus 142 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 221 (450)
+++.|=+-++||.-++. .+..+ .|..-|.+++|+.|
T Consensus 76 saaadftakvw~a~tgd----------------elhsf----------------------------~hkhivk~~af~~d 111 (334)
T KOG0278|consen 76 SAAADFTAKVWDAVTGD----------------ELHSF----------------------------EHKHIVKAVAFSQD 111 (334)
T ss_pred hhcccchhhhhhhhhhh----------------hhhhh----------------------------hhhheeeeEEeccc
Confidence 88999999999998882 22222 48889999999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCe-EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhH
Q 041325 222 GSLLYSTSWDRTFKIWRTSDFR-CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTL 300 (450)
Q Consensus 222 ~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 300 (450)
.++|++|+.+..+|+||++..+ +...+. +|.+.|..+.|.. .++.+++.+.|+.||+||.+++. .++.+
T Consensus 112 s~~lltgg~ekllrvfdln~p~App~E~~-ghtg~Ir~v~wc~-eD~~iLSSadd~tVRLWD~rTgt--------~v~sL 181 (334)
T KOG0278|consen 112 SNYLLTGGQEKLLRVFDLNRPKAPPKEIS-GHTGGIRTVLWCH-EDKCILSSADDKTVRLWDHRTGT--------EVQSL 181 (334)
T ss_pred chhhhccchHHHhhhhhccCCCCCchhhc-CCCCcceeEEEec-cCceEEeeccCCceEEEEeccCc--------EEEEE
Confidence 9999999999999999998765 344555 8999999999997 55578888999999999998887 55555
Q ss_pred hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCC
Q 041325 301 EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSD 378 (450)
Q Consensus 301 ~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~d 378 (450)
. .+..|+++.++++|++|.++ ..+.|..||..+-..+. .. .-...|.+.+..|+ .+++|+.|
T Consensus 182 ~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lK-------------s~-k~P~nV~SASL~P~k~~fVaGged 245 (334)
T KOG0278|consen 182 E-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLK-------------SY-KMPCNVESASLHPKKEFFVAGGED 245 (334)
T ss_pred e-cCCCCcceeeccCCCEEEEe-cCceeEEecccccccee-------------ec-cCccccccccccCCCceEEecCcc
Confidence 4 56889999999999877665 46789999999765542 11 12344566666654 89999999
Q ss_pred CeEEEeeCCCCccccCCCceeEEE-ecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 379 NTIRIWRRSSSVTDHQKGYSCLAV-LEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 379 g~v~iwd~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
..++.||+.++ ..+.. .++|.++|.|+.|+|+|. ..++||.||+|+||.+
T Consensus 246 ~~~~kfDy~Tg--------eEi~~~nkgh~gpVhcVrFSPdGE-------------~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 246 FKVYKFDYNTG--------EEIGSYNKGHFGPVHCVRFSPDGE-------------LYASGSEDGTIRLWQT 296 (334)
T ss_pred eEEEEEeccCC--------ceeeecccCCCCceEEEEECCCCc-------------eeeccCCCceEEEEEe
Confidence 99999999986 33444 489999999999999999 9999999999999986
No 41
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.2e-35 Score=257.95 Aligned_cols=326 Identities=20% Similarity=0.357 Sum_probs=260.2
Q ss_pred CcccCCCccCCCCCcc--ccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE-eCCE
Q 041325 11 CRRNKEPKFQPSSNHL--QSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI-AGKL 87 (450)
Q Consensus 11 ~~~~~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~-d~~~ 87 (450)
.+|++++.+-|.+... ....+++++.. +..+. + ....+....+..+.+.||...|+++++ +.+.
T Consensus 320 ~~kiks~dv~~~~~~~~~lv~l~nNtv~~----ysl~~---s------~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~ 386 (888)
T KOG0306|consen 320 SAKIKSFDVTPSGGTENTLVLLANNTVEW----YSLEN---S------GKTSPEADRTSNIEIGGHRSDVRSLCVSSDSI 386 (888)
T ss_pred hhheeEEEEEecCCcceeEEEeecCceEE----EEecc---C------CCCCccccccceeeeccchhheeEEEeecCce
Confidence 4589999998887665 22456666543 11111 0 011134456677888899999999999 4444
Q ss_pred EEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEecc
Q 041325 88 LYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTS 165 (450)
Q Consensus 88 l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~ 165 (450)
++..+..+.+++|+..+.+++.. -..+.+.+..|.|.. +++|...|.+.++|+.+..
T Consensus 387 ~~~Sga~~SikiWn~~t~kciRT--------------i~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~------- 445 (888)
T KOG0306|consen 387 LLASGAGESIKIWNRDTLKCIRT--------------ITCGYILASKFVPGDRYIVLGTKNGELQVFDLASAS------- 445 (888)
T ss_pred eeeecCCCcEEEEEccCcceeEE--------------eccccEEEEEecCCCceEEEeccCCceEEEEeehhh-------
Confidence 44444458999999999998776 122377888887655 9999999999999998772
Q ss_pred CcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCC----
Q 041325 166 GKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSD---- 241 (450)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---- 241 (450)
.+.+ ...|.+.+.+++.+||+..+++|+.|.+|++||..-
T Consensus 446 ---------l~Et---------------------------i~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~ 489 (888)
T KOG0306|consen 446 ---------LVET---------------------------IRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSV 489 (888)
T ss_pred ---------hhhh---------------------------hhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEecc
Confidence 2222 236999999999999999999999999999999742
Q ss_pred -CeE--EEEee----cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcC
Q 041325 242 -FRC--LESVK----NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST 314 (450)
Q Consensus 242 -~~~--~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 314 (450)
+.. ...+. ......|.|+.++|++ .+|+++--|.+|++|-+++-+ ..-.+.+|.-+|.||..+|
T Consensus 490 ~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg-k~LaVsLLdnTVkVyflDtlK--------FflsLYGHkLPV~smDIS~ 560 (888)
T KOG0306|consen 490 PGTQKKVLSLKHTRTLELEDDVLCVSVSPDG-KLLAVSLLDNTVKVYFLDTLK--------FFLSLYGHKLPVLSMDISP 560 (888)
T ss_pred CcccceeeeeccceEEeccccEEEEEEcCCC-cEEEEEeccCeEEEEEeccee--------eeeeecccccceeEEeccC
Confidence 111 11111 1346789999999954 499999999999999987665 6677889999999999999
Q ss_pred CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCCCccc
Q 041325 315 DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTD 392 (450)
Q Consensus 315 ~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~ 392 (450)
|++++++|+.|.+|+||-+.-|.|- ..+.+|...|+++.|.|+ ++++++.|+.|+-||-..
T Consensus 561 DSklivTgSADKnVKiWGLdFGDCH-------------KS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k---- 623 (888)
T KOG0306|consen 561 DSKLIVTGSADKNVKIWGLDFGDCH-------------KSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK---- 623 (888)
T ss_pred CcCeEEeccCCCceEEeccccchhh-------------hhhhcccCceeEEEEcccceeEEEecCcceEEeechhh----
Confidence 9999999999999999999988755 788899999999999976 899999999999999765
Q ss_pred cCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 393 HQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 393 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
++++..+.+|...|++++.+|+|. +++++|.|.+|++|+.
T Consensus 624 ----Fe~iq~L~~H~~ev~cLav~~~G~-------------~vvs~shD~sIRlwE~ 663 (888)
T KOG0306|consen 624 ----FEEIQKLDGHHSEVWCLAVSPNGS-------------FVVSSSHDKSIRLWER 663 (888)
T ss_pred ----hhhheeeccchheeeeeEEcCCCC-------------eEEeccCCceeEeeec
Confidence 688999999999999999999999 9999999999999974
No 42
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=1.9e-34 Score=263.02 Aligned_cols=273 Identities=28% Similarity=0.504 Sum_probs=241.6
Q ss_pred CCCcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe--CCeEEEEeCCCeEE
Q 041325 73 GNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL--GDKLFSAHQDHKIR 150 (450)
Q Consensus 73 ~h~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~ 150 (450)
.|...+.+..+.+.++++++.|++|++|+..++..+.. .+.||.+.|+++++. .+.+++|+.|.+++
T Consensus 206 ~~~~~~~~~q~~~~~~~~~s~~~tl~~~~~~~~~~i~~-----------~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~r 274 (537)
T KOG0274|consen 206 TDDHVVLCLQLHDGFFKSGSDDSTLHLWDLNNGYLILT-----------RLVGHFGGVWGLAFPSGGDKLVSGSTDKTER 274 (537)
T ss_pred cCcchhhhheeecCeEEecCCCceeEEeecccceEEEe-----------eccCCCCCceeEEEecCCCEEEEEecCCcEE
Confidence 36678999999999999999999999999988876554 367999999999999 77799999999999
Q ss_pred EEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeC
Q 041325 151 VWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSW 230 (450)
Q Consensus 151 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 230 (450)
+||..++ .|... +.+|.+.|.++... ...+++|+.
T Consensus 275 vWd~~sg----------------~C~~~---------------------------l~gh~stv~~~~~~--~~~~~sgs~ 309 (537)
T KOG0274|consen 275 VWDCSTG----------------ECTHS---------------------------LQGHTSSVRCLTID--PFLLVSGSR 309 (537)
T ss_pred eEecCCC----------------cEEEE---------------------------ecCCCceEEEEEcc--CceEeeccC
Confidence 9999998 33333 34799999998876 456888999
Q ss_pred CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEE
Q 041325 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310 (450)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l 310 (450)
|.+|++|++.++.++..+. +|..+|.++..+ ..++++|+.|+.|++||+.+++ ++..+.+|...|.++
T Consensus 310 D~tVkVW~v~n~~~l~l~~-~h~~~V~~v~~~---~~~lvsgs~d~~v~VW~~~~~~--------cl~sl~gH~~~V~sl 377 (537)
T KOG0274|consen 310 DNTVKVWDVTNGACLNLLR-GHTGPVNCVQLD---EPLLVSGSYDGTVKVWDPRTGK--------CLKSLSGHTGRVYSL 377 (537)
T ss_pred CceEEEEeccCcceEEEec-cccccEEEEEec---CCEEEEEecCceEEEEEhhhce--------eeeeecCCcceEEEE
Confidence 9999999999999999998 699999999997 5599999999999999998777 899999999999999
Q ss_pred EEcCCCCEEEEeeCCCcEEEEEcCCC-ceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCCC
Q 041325 311 ALSTDGTVLYSGACDRSILVWERDQG-NYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 311 ~~~~~~~~l~~g~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~ 389 (450)
.+... +.+++|+.|+.|++||+++. +++ ..+.+|...+..+.+.+++|++++.|++|++||.+++
T Consensus 378 ~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~-------------~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik~WD~~~~ 443 (537)
T KOG0274|consen 378 IVDSE-NRLLSGSLDTTIKVWDLRTKRKCI-------------HTLQGHTSLVSSLLLRDNFLVSSSADGTIKLWDAEEG 443 (537)
T ss_pred EecCc-ceEEeeeeccceEeecCCchhhhh-------------hhhcCCcccccccccccceeEeccccccEEEeecccC
Confidence 88654 89999999999999999988 654 7889999999999999999999999999999999875
Q ss_pred ccccCCCceeEEEecC-CCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 390 VTDHQKGYSCLAVLEG-HRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 390 ~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+++..+.+ |...|..+++. .. .+++++.||.+++||++
T Consensus 444 --------~~~~~~~~~~~~~v~~l~~~--~~-------------~il~s~~~~~~~l~dl~ 482 (537)
T KOG0274|consen 444 --------ECLRTLEGRHVGGVSALALG--KE-------------EILCSSDDGSVKLWDLR 482 (537)
T ss_pred --------ceeeeeccCCcccEEEeecC--cc-------------eEEEEecCCeeEEEecc
Confidence 78888888 67889888876 33 79999999999999985
No 43
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.4e-33 Score=250.25 Aligned_cols=344 Identities=24% Similarity=0.401 Sum_probs=254.3
Q ss_pred cCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEE
Q 041325 55 KQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKS 132 (450)
Q Consensus 55 ~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 132 (450)
.++++.......-++. ||..+|+++.| .|..|++||.|+.|.+||+-...-... +.||.+.|+.
T Consensus 89 Vqif~~~s~~~~~tfn--gHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV~E~Gl~r------------L~GHkd~iT~ 154 (888)
T KOG0306|consen 89 VQIFSLESEEILITFN--GHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLVGEEGLFR------------LRGHKDSITQ 154 (888)
T ss_pred EEeeccCCCceeeeec--ccccceEEEEEcccCceEeecCCCccEEEEEeccceeeEE------------eecchHHHhH
Confidence 3444444445666777 99999999999 599999999999999999876654443 7899999999
Q ss_pred EEEeC-Ce-EEEEeCCCeEEEEEcCCCceeEEeccCcc------------------cc-cce------------------
Q 041325 133 LVVLG-DK-LFSAHQDHKIRVWKIDNNTSAYYSTSGKL------------------KN-KYY------------------ 173 (450)
Q Consensus 133 l~~~~-~~-l~s~~~dg~i~iw~~~~~~~~~~~~~~~~------------------~~-~~~------------------ 173 (450)
.-|.. +. +++.+.|+.|++||+++..+........- .. ..+
T Consensus 155 ~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~ 234 (888)
T KOG0306|consen 155 ALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWELAFEDDEKETNRYISTK 234 (888)
T ss_pred HhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEEeecccccccccccceee
Confidence 99986 44 99999999999999998755322111110 00 000
Q ss_pred -----------eeeeeccCCCcceeEeeecC-------------------------------------------------
Q 041325 174 -----------ERIATLPTLNDRFTKCFLAN------------------------------------------------- 193 (450)
Q Consensus 174 -----------~~~~~~~~~~~~~~~~~~~~------------------------------------------------- 193 (450)
..+.......+++..+-..+
T Consensus 235 ~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~ 314 (888)
T KOG0306|consen 235 LRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRL 314 (888)
T ss_pred ccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHH
Confidence 01111111122222221111
Q ss_pred -----------------------------ceEEEeec-------------ceeeeecCCCceEEEEEccCCCEEEEEeCC
Q 041325 194 -----------------------------NYVQVRRH-------------KKCTWVHHVDTVSALALSSDGSLLYSTSWD 231 (450)
Q Consensus 194 -----------------------------~~~~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 231 (450)
+.+..... ....+.+|...|.+++++.+...+++|+ .
T Consensus 315 ~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~ 393 (888)
T KOG0306|consen 315 ETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGA-G 393 (888)
T ss_pred HheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecC-C
Confidence 11111000 0133568999999999999888777776 6
Q ss_pred CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEE
Q 041325 232 RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALA 311 (450)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 311 (450)
+.|++|+..+.++++++. .+.+.+..|.| ++.++++|...|.+.+||+.... ++....+|.+.|++++
T Consensus 394 ~SikiWn~~t~kciRTi~---~~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~~--------l~Eti~AHdgaIWsi~ 461 (888)
T KOG0306|consen 394 ESIKIWNRDTLKCIRTIT---CGYILASKFVP-GDRYIVLGTKNGELQVFDLASAS--------LVETIRAHDGAIWSIS 461 (888)
T ss_pred CcEEEEEccCcceeEEec---cccEEEEEecC-CCceEEEeccCCceEEEEeehhh--------hhhhhhccccceeeee
Confidence 799999999999999997 34888999998 67799999999999999997666 7888889999999999
Q ss_pred EcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCc-eeee-ccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCC
Q 041325 312 LSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGH-MVLK-GALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 312 ~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~ 387 (450)
.+||++.+++|+.|.+|++||+.--. ........ ..+. ...-.-...|.|++++|+ +|+.+--|++|+||-+.
T Consensus 462 ~~pD~~g~vT~saDktVkfWdf~l~~---~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflD 538 (888)
T KOG0306|consen 462 LSPDNKGFVTGSADKTVKFWDFKLVV---SVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLD 538 (888)
T ss_pred ecCCCCceEEecCCcEEEEEeEEEEe---ccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEec
Confidence 99999999999999999999986211 10000000 0000 011123567899999954 99999999999999998
Q ss_pred CCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 388 SSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+ .+..-.+.||.-||.|+..+||++ +++|||.|..|++|-+
T Consensus 539 t--------lKFflsLYGHkLPV~smDIS~DSk-------------livTgSADKnVKiWGL 579 (888)
T KOG0306|consen 539 T--------LKFFLSLYGHKLPVLSMDISPDSK-------------LIVTGSADKNVKIWGL 579 (888)
T ss_pred c--------eeeeeeecccccceeEEeccCCcC-------------eEEeccCCCceEEecc
Confidence 7 578889999999999999999999 9999999999999976
No 44
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=8.6e-33 Score=235.66 Aligned_cols=348 Identities=20% Similarity=0.254 Sum_probs=249.7
Q ss_pred cccCCCCCccceeeeEEe-ecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCC-------------
Q 041325 53 FRKQAPAASEHQCSATLK-VKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVG------------- 116 (450)
Q Consensus 53 ~~~~~~~~~~~~~~~~l~-~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~------------- 116 (450)
...-++.-.+++.+..|. -.+|.+.|.+++| |+..++|++.|.+++|||+.+.+++........
T Consensus 212 gki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd 291 (603)
T KOG0318|consen 212 GKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKD 291 (603)
T ss_pred ccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCC
Confidence 445567777888888776 4589999999999 899999999999999999998776554322111
Q ss_pred ------------------CcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeee
Q 041325 117 ------------------DHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERI 176 (450)
Q Consensus 117 ------------------~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~ 176 (450)
......+.||...|+++..+++. |++|+.||.|.-|+..++.......... ...+
T Consensus 292 ~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h-----~nqI 366 (603)
T KOG0318|consen 292 HLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGH-----TNQI 366 (603)
T ss_pred eEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccc-----cceE
Confidence 11344577999999999999877 9999999999999999885533221111 1222
Q ss_pred eeccCCCcceeEeeecCceEEEeecceeeee-----cCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecc
Q 041325 177 ATLPTLNDRFTKCFLANNYVQVRRHKKCTWV-----HHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNA 251 (450)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 251 (450)
..+...+........-+..+.........+. .-.....+++..+++.+++..+.++.+.+=|.. .+..+.
T Consensus 367 ~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~---~~~~~~-- 441 (603)
T KOG0318|consen 367 KGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQT---KVSSIP-- 441 (603)
T ss_pred EEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCC---cceeec--
Confidence 3333333222222222222222211111111 111223477888887777777755555444433 222222
Q ss_pred cccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEE
Q 041325 252 HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVW 331 (450)
Q Consensus 252 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vw 331 (450)
-.-...+++++|+ ...+++|+.||.|++|.+..... ........|.++|++++|+||+.+|++|...+.+.+|
T Consensus 442 ~~y~~s~vAv~~~-~~~vaVGG~Dgkvhvysl~g~~l------~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~y 514 (603)
T KOG0318|consen 442 IGYESSAVAVSPD-GSEVAVGGQDGKVHVYSLSGDEL------KEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLY 514 (603)
T ss_pred cccccceEEEcCC-CCEEEEecccceEEEEEecCCcc------cceeeeecccCCceEEEECCCCcEEEEeccCCcEEEE
Confidence 3456788999984 44899999999999999876541 1233455699999999999999999999999999999
Q ss_pred EcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcc
Q 041325 332 ERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRP 409 (450)
Q Consensus 332 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~ 409 (450)
|+.+.+.. ...+.-|...|.|++|+++ ++|||+.|-.|.||+++.+ .+.+....+|...
T Consensus 515 d~~s~~~~------------~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP-------~~~i~iknAH~~g 575 (603)
T KOG0318|consen 515 DVASREVK------------TNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKP-------AKHIIIKNAHLGG 575 (603)
T ss_pred EcccCcee------------cceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccCh-------hhheEeccccccC
Confidence 99986532 2456679999999999976 9999999999999999864 3446667889999
Q ss_pred eEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 410 VKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 410 v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
|+.+.|..+.. +++.|.|..|++|.+.
T Consensus 576 Vn~v~wlde~t--------------vvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 576 VNSVAWLDEST--------------VVSSGQDANIKVWNVT 602 (603)
T ss_pred ceeEEEecCce--------------EEeccCcceeEEeccc
Confidence 99999987765 9999999999999873
No 45
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.2e-34 Score=223.35 Aligned_cols=263 Identities=19% Similarity=0.294 Sum_probs=220.4
Q ss_pred CCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---EEEEeCCCeEEEEEcCCCceeEEeccCcccc
Q 041325 94 NGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKN 170 (450)
Q Consensus 94 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 170 (450)
.|.+.|-++...+-+... ....-.+.+..++|+++. +++++.||++++||.....
T Consensus 37 ~G~L~ile~~~~~gi~e~----------~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s------------ 94 (311)
T KOG0277|consen 37 NGRLFILEVTDPKGIQEC----------QSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS------------ 94 (311)
T ss_pred CceEEEEecCCCCCeEEE----------EeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCC------------
Confidence 588999988644322221 122345689999999655 9999999999999965431
Q ss_pred cceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCeEEEEee
Q 041325 171 KYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSDFRCLESVK 249 (450)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 249 (450)
.+...+++|..+|.++.|++ ++..+++++.|++|++|+...++.+.++.
T Consensus 95 ------------------------------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~ 144 (311)
T KOG0277|consen 95 ------------------------------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFN 144 (311)
T ss_pred ------------------------------cchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeec
Confidence 24445668999999999999 67788899999999999999999999998
Q ss_pred cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcC-CCCEEEEeeCCCcE
Q 041325 250 NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST-DGTVLYSGACDRSI 328 (450)
Q Consensus 250 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~g~~dg~i 328 (450)
+|...|....|+|...+++++++.|+.+++||++... ....+..|...|.++.|+. +.+.+++|+.|+.|
T Consensus 145 -gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~g--------k~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~v 215 (311)
T KOG0277|consen 145 -GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPG--------KFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLV 215 (311)
T ss_pred -CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCC--------ceeEEEeccceeEeecccccCCcEEEecCCCceE
Confidence 8999999999999999999999999999999997654 2333778999999999998 67789999999999
Q ss_pred EEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC---eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecC
Q 041325 329 LVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN---LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG 405 (450)
Q Consensus 329 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 405 (450)
++||+++.+ .+...+.+|.-.|..+.|++. .|++++.|-++||||...+ ..++.+...
T Consensus 216 r~wDir~~r------------~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~-------ds~~e~~~~ 276 (311)
T KOG0277|consen 216 RGWDIRNLR------------TPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ-------DSAIETVDH 276 (311)
T ss_pred EEEehhhcc------------ccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc-------hhhhhhhhc
Confidence 999999764 245678999999999999965 9999999999999998853 356667778
Q ss_pred CCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 406 HRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 406 h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
|+.-|..+.|++.... ++|+++-|+.++||+
T Consensus 277 HtEFv~g~Dws~~~~~------------~vAs~gWDe~l~Vw~ 307 (311)
T KOG0277|consen 277 HTEFVCGLDWSLFDPG------------QVASTGWDELLYVWN 307 (311)
T ss_pred cceEEeccccccccCc------------eeeecccccceeeec
Confidence 9999999999987554 899999999999997
No 46
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=1.4e-33 Score=219.88 Aligned_cols=277 Identities=18% Similarity=0.272 Sum_probs=230.1
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC---CeEEEEeCCC
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG---DKLFSAHQDH 147 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~~~dg 147 (450)
+|...|.+++| +|..|++|+.|+++.+|+++....... ....+|.+.|-.++|.+ +.+++++.|+
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~----------~~~~gh~~svdql~w~~~~~d~~atas~dk 87 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE----------LVYRGHTDSVDQLCWDPKHPDLFATASGDK 87 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh----------hcccCCCcchhhheeCCCCCcceEEecCCc
Confidence 99999999999 899999999999999999987753332 23569999999999984 4599999999
Q ss_pred eEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEE
Q 041325 148 KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYS 227 (450)
Q Consensus 148 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 227 (450)
+|++||++..+ +..... ..+.-.-+.|+|+|.+++.
T Consensus 88 ~ir~wd~r~~k----------------~~~~i~----------------------------~~~eni~i~wsp~g~~~~~ 123 (313)
T KOG1407|consen 88 TIRIWDIRSGK----------------CTARIE----------------------------TKGENINITWSPDGEYIAV 123 (313)
T ss_pred eEEEEEeccCc----------------EEEEee----------------------------ccCcceEEEEcCCCCEEEE
Confidence 99999999984 333322 2223345789999999999
Q ss_pred EeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccce
Q 041325 228 TSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAV 307 (450)
Q Consensus 228 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i 307 (450)
++.|..|.+.|.++.+.....+ ....++.+.|+. .+.+++.....|.|.|.....- ++++.++.|....
T Consensus 124 ~~kdD~it~id~r~~~~~~~~~--~~~e~ne~~w~~-~nd~Fflt~GlG~v~ILsypsL--------kpv~si~AH~snC 192 (313)
T KOG1407|consen 124 GNKDDRITFIDARTYKIVNEEQ--FKFEVNEISWNN-SNDLFFLTNGLGCVEILSYPSL--------KPVQSIKAHPSNC 192 (313)
T ss_pred ecCcccEEEEEecccceeehhc--ccceeeeeeecC-CCCEEEEecCCceEEEEecccc--------ccccccccCCcce
Confidence 9999999999999988887775 667889999995 4446666677799999987544 4899999999999
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEee
Q 041325 308 TALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWR 385 (450)
Q Consensus 308 ~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd 385 (450)
.||.|+|+|++||+|+.|-.+.+||+...- ..+.+..+.-+|..++|+ +++||+||.|..|-|=+
T Consensus 193 icI~f~p~GryfA~GsADAlvSLWD~~ELi-------------C~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~ 259 (313)
T KOG1407|consen 193 ICIEFDPDGRYFATGSADALVSLWDVDELI-------------CERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAE 259 (313)
T ss_pred EEEEECCCCceEeeccccceeeccChhHhh-------------hheeeccccCceEEEEeccCcceeeccCccceEEeEe
Confidence 999999999999999999999999998644 446778889999999997 67999999999999999
Q ss_pred CCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccC---------CcEEEEEe
Q 041325 386 RSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLD---------CEIKIWQI 449 (450)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~D---------g~i~iw~l 449 (450)
+++| ..+..++ +.++...|+|+|... +||-+++| |.|++|-+
T Consensus 260 vetG--------d~~~eI~-~~~~t~tVAWHPk~~-------------LLAyA~ddk~~d~~reag~vKiFG~ 310 (313)
T KOG1407|consen 260 VETG--------DRVWEIP-CEGPTFTVAWHPKRP-------------LLAYACDDKDGDSNREAGTVKIFGL 310 (313)
T ss_pred cccC--------CeEEEee-ccCCceeEEecCCCc-------------eeeEEecCCCCccccccceeEEecC
Confidence 9986 4455554 788999999999998 88877754 56777643
No 47
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.8e-34 Score=255.76 Aligned_cols=256 Identities=20% Similarity=0.346 Sum_probs=218.6
Q ss_pred ccCCcccCCcccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEE
Q 041325 3 LLLPFPMPCRRNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLA 82 (450)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~ 82 (450)
||+-|-.-.+|+|+++|.|..+-+....++.++ |.+..+.+.++..|. +|.++|+.+.
T Consensus 1 mltkfEskSsRvKglsFHP~rPwILtslHsG~I--------------------QlWDYRM~tli~rFd--eHdGpVRgv~ 58 (1202)
T KOG0292|consen 1 MLTKFESKSSRVKGLSFHPKRPWILTSLHSGVI--------------------QLWDYRMGTLIDRFD--EHDGPVRGVD 58 (1202)
T ss_pred CcchhhcccccccceecCCCCCEEEEeecCcee--------------------eeehhhhhhHHhhhh--ccCCccceee
Confidence 455566667799999999999988887666555 667778889999999 9999999999
Q ss_pred E--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCc
Q 041325 83 I--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNT 158 (450)
Q Consensus 83 ~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~ 158 (450)
| .+.++++|++|-.|+||+....+++.. +.||-+-|..+.|++.+ +++++.|.+|+||++.+.
T Consensus 59 FH~~qplFVSGGDDykIkVWnYk~rrclft------------L~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr- 125 (1202)
T KOG0292|consen 59 FHPTQPLFVSGGDDYKIKVWNYKTRRCLFT------------LLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR- 125 (1202)
T ss_pred ecCCCCeEEecCCccEEEEEecccceehhh------------hccccceeEEeeccCCCceEEEccCCCeEEEEeccCC-
Confidence 9 799999999999999999999988776 88999999999999988 999999999999999998
Q ss_pred eeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEe
Q 041325 159 SAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWR 238 (450)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 238 (450)
.++.. +.+|...|.|..|+|..+++++++.|.+||+||
T Consensus 126 ---------------~~iav---------------------------ltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWD 163 (1202)
T KOG0292|consen 126 ---------------KCIAV---------------------------LTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWD 163 (1202)
T ss_pred ---------------ceEEE---------------------------EecCceEEEeeccCCccceEEEecccceEEEEe
Confidence 44444 448999999999999999999999999999999
Q ss_pred cCCC----------------------------eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc
Q 041325 239 TSDF----------------------------RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290 (450)
Q Consensus 239 ~~~~----------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 290 (450)
+... ..++.+..+|...|+-++|+|.-. ++++|+.|..|++|.+...+
T Consensus 164 isGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlp-liVSG~DDRqVKlWrmnetK--- 239 (1202)
T KOG0292|consen 164 ISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLP-LIVSGADDRQVKLWRMNETK--- 239 (1202)
T ss_pred ecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcc-eEEecCCcceeeEEEecccc---
Confidence 8531 122233358999999999998555 99999999999999986543
Q ss_pred cccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeC
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDG 342 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~ 342 (450)
.+ .+.+..+|.+.|.++-|+|..+++++.++|+.|+|||+...+.+..+
T Consensus 240 --aW-EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tf 288 (1202)
T KOG0292|consen 240 --AW-EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTF 288 (1202)
T ss_pred --ce-eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeee
Confidence 11 35677899999999999999999999999999999999987766433
No 48
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-33 Score=245.80 Aligned_cols=257 Identities=20% Similarity=0.318 Sum_probs=222.0
Q ss_pred CCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEec
Q 041325 48 APSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATG 125 (450)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (450)
+...+...+++...+..+++.+. -...+|++..| -.+++++|++|+.|||++.++++.+.. +..
T Consensus 30 a~LynG~V~IWnyetqtmVksfe--V~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~------------FeA 95 (794)
T KOG0276|consen 30 AALYNGDVQIWNYETQTMVKSFE--VSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKT------------FEA 95 (794)
T ss_pred EeeecCeeEEEecccceeeeeee--ecccchhhheeeeccceEEEecCCceEEEEecccceeeEE------------eec
Confidence 33345566788888889999999 78899999999 689999999999999999999997776 889
Q ss_pred CCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecce
Q 041325 126 NGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKK 203 (450)
Q Consensus 126 h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (450)
|.+-|.+++.+|.. +++++.|-+|++||.+.+- ...
T Consensus 96 H~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~w------------------------------------------a~~ 133 (794)
T KOG0276|consen 96 HSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEW------------------------------------------ACE 133 (794)
T ss_pred cccceeeeeecCCCCeEEecCCccEEEEeeccCce------------------------------------------eee
Confidence 99999999999988 9999999999999999872 233
Q ss_pred eeeecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCc-EEEEEcCCCcEEEE
Q 041325 204 CTWVHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDG-FVYTGSADTKIKVW 281 (450)
Q Consensus 204 ~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vw 281 (450)
..+.+|+..|.+++|+| |.+.+++++.|++|++|.+.+..+..++. +|...|+++.+.+.++. +|++|+.|..|++|
T Consensus 134 qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~-gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvW 212 (794)
T KOG0276|consen 134 QTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLE-GHEKGVNCVDYYTGGDKPYLISGADDLTIKVW 212 (794)
T ss_pred eEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeee-ccccCcceEEeccCCCcceEEecCCCceEEEe
Confidence 45668999999999999 78899999999999999999999999999 99999999999864433 89999999999999
Q ss_pred eCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccc
Q 041325 282 KKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA 361 (450)
Q Consensus 282 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (450)
|..+.. +++++.+|...|..+.|+|.-.++++|++||+++||+..+-+. ...+.-.-..
T Consensus 213 DyQtk~--------CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~l-------------E~tLn~gleR 271 (794)
T KOG0276|consen 213 DYQTKS--------CVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKL-------------EKTLNYGLER 271 (794)
T ss_pred ecchHH--------HHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcceeh-------------hhhhhcCCce
Confidence 998777 8999999999999999999999999999999999999887543 2445555667
Q ss_pred eEEEEEe--CCeEEEEeCCCeEE
Q 041325 362 ILCLAVV--SNLLFSGSSDNTIR 382 (450)
Q Consensus 362 v~~~~~~--~~~l~s~~~dg~v~ 382 (450)
++|++.. .+.++.|..+|.|.
T Consensus 272 vW~I~~~k~~~~i~vG~Deg~i~ 294 (794)
T KOG0276|consen 272 VWCIAAHKGDGKIAVGFDEGSVT 294 (794)
T ss_pred EEEEeecCCCCeEEEeccCCcEE
Confidence 8888865 34677777766654
No 49
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=2.8e-33 Score=218.82 Aligned_cols=287 Identities=15% Similarity=0.245 Sum_probs=224.0
Q ss_pred ecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCC
Q 041325 71 VKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQD 146 (450)
Q Consensus 71 ~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d 146 (450)
+.||..+++.+.+ +|.+|++++.|.+..||-..+++.+-. +.||.+.|+++...-+. +++|+.|
T Consensus 6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGt------------y~GHtGavW~~Did~~s~~liTGSAD 73 (327)
T KOG0643|consen 6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGT------------YDGHTGAVWCCDIDWDSKHLITGSAD 73 (327)
T ss_pred cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeee------------ecCCCceEEEEEecCCcceeeecccc
Confidence 4499999999999 799999999999999999888886666 88999999999987544 9999999
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLY 226 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 226 (450)
.++++||+++++ .+...+ ...+|..+.|+++|++++
T Consensus 74 ~t~kLWDv~tGk----------------~la~~k----------------------------~~~~Vk~~~F~~~gn~~l 109 (327)
T KOG0643|consen 74 QTAKLWDVETGK----------------QLATWK----------------------------TNSPVKRVDFSFGGNLIL 109 (327)
T ss_pred ceeEEEEcCCCc----------------EEEEee----------------------------cCCeeEEEeeccCCcEEE
Confidence 999999999994 333333 344899999999999888
Q ss_pred EEeC-----CCcEEEEecC-------CCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccc
Q 041325 227 STSW-----DRTFKIWRTS-------DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKH 294 (450)
Q Consensus 227 ~~~~-----dg~i~iwd~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 294 (450)
.... .+.|.++|++ ..++...+. .+.+.++.+.|.|.++ +|++|..||.|..||+++++
T Consensus 110 ~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~-t~~skit~a~Wg~l~~-~ii~Ghe~G~is~~da~~g~------- 180 (327)
T KOG0643|consen 110 ASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIP-TPDSKITSALWGPLGE-TIIAGHEDGSISIYDARTGK------- 180 (327)
T ss_pred EEehhhcCcceEEEEEEccCChhhhcccCceEEec-CCccceeeeeecccCC-EEEEecCCCcEEEEEcccCc-------
Confidence 7753 4679999998 345566666 5678999999999554 99999999999999998875
Q ss_pred hhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeE
Q 041325 295 SLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLL 372 (450)
Q Consensus 295 ~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l 372 (450)
..+..-..|...|+.|++++|..++++++.|.+-++||..+.+.+ ..+ ....+|++.++.| +.+
T Consensus 181 ~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~-------------Kty-~te~PvN~aaisP~~d~V 246 (327)
T KOG0643|consen 181 ELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVL-------------KTY-TTERPVNTAAISPLLDHV 246 (327)
T ss_pred eeeechhhhccccccccccCCcceEEecccCccceeeeccceeeE-------------EEe-eecccccceecccccceE
Confidence 255666778999999999999999999999999999999986654 122 2356788888775 355
Q ss_pred EEEe-CCCe-EEEeeCCCCcccc----CCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEE
Q 041325 373 FSGS-SDNT-IRIWRRSSSVTDH----QKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKI 446 (450)
Q Consensus 373 ~s~~-~dg~-v~iwd~~~~~~~~----~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~i 446 (450)
+.|+ .+-. |.--+.+.++.+. .--.+.+...++|-++|++|+|+|+|+ ..++|+.||.|++
T Consensus 247 ilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGk-------------sYsSGGEDG~VR~ 313 (327)
T KOG0643|consen 247 ILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGK-------------SYSSGGEDGYVRL 313 (327)
T ss_pred EecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCc-------------ccccCCCCceEEE
Confidence 5444 3321 2111222111000 000144667899999999999999999 8999999999998
Q ss_pred EEe
Q 041325 447 WQI 449 (450)
Q Consensus 447 w~l 449 (450)
.-+
T Consensus 314 h~F 316 (327)
T KOG0643|consen 314 HHF 316 (327)
T ss_pred EEe
Confidence 643
No 50
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=9.9e-34 Score=225.00 Aligned_cols=247 Identities=23% Similarity=0.405 Sum_probs=212.4
Q ss_pred eEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEE
Q 041325 121 VVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQV 198 (450)
Q Consensus 121 ~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (450)
..+.+|++.|+.+.|+|++ |++|+.|..|.+|++-...
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc---------------------------------------- 80 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC---------------------------------------- 80 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc----------------------------------------
Confidence 3477999999999999988 9999999999999976552
Q ss_pred eecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcE
Q 041325 199 RRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKI 278 (450)
Q Consensus 199 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 278 (450)
+....+.+|.+.|..+.|.+|++.+++++.|.+++.||+++|+++..++ .|..-|+++.-...+..++.+++.||++
T Consensus 81 --eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k-~h~~~vNs~~p~rrg~~lv~SgsdD~t~ 157 (338)
T KOG0265|consen 81 --ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHK-GHTSFVNSLDPSRRGPQLVCSGSDDGTL 157 (338)
T ss_pred --cceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhc-cccceeeecCccccCCeEEEecCCCceE
Confidence 1223344899999999999999999999999999999999999999999 8999999998665555578999999999
Q ss_pred EEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC
Q 041325 279 KVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358 (450)
Q Consensus 279 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (450)
++||+++.+ .++.+. .+.+++++.|..++..+++|+-|+.|++||++.+..+ ..+.+|
T Consensus 158 kl~D~R~k~--------~~~t~~-~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~-------------~~lsGh 215 (338)
T KOG0265|consen 158 KLWDIRKKE--------AIKTFE-NKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGL-------------YTLSGH 215 (338)
T ss_pred EEEeecccc--------hhhccc-cceeEEEEEecccccceeeccccCceeeeccccCcce-------------EEeecc
Confidence 999998766 566554 4678999999999999999999999999999987654 688999
Q ss_pred ccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCc----ceEEEEEEecCCCCCCCCCCCCce
Q 041325 359 TKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRR----PVKCLTAVVDSDYSNRNSDHSSTS 432 (450)
Q Consensus 359 ~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~----~v~~l~~~~~~~~~~~~~~~~~~~ 432 (450)
..+|+.++.+ +.++.+-++|.++++||++.- ....+++..+.+|.. ....++|+|++.
T Consensus 216 ~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~----~p~~R~v~if~g~~hnfeknlL~cswsp~~~------------ 279 (338)
T KOG0265|consen 216 ADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPF----APSQRCVKIFQGHIHNFEKNLLKCSWSPNGT------------ 279 (338)
T ss_pred cCceeeEEeccCCCccccccccceEEEEEeccc----CCCCceEEEeecchhhhhhhcceeeccCCCC------------
Confidence 9999999987 569999999999999999864 333466777777643 456778999999
Q ss_pred EEEEEcccCCcEEEEEe
Q 041325 433 FLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 433 ~~l~s~~~Dg~i~iw~l 449 (450)
.+..|+.|..+++||.
T Consensus 280 -~i~ags~dr~vyvwd~ 295 (338)
T KOG0265|consen 280 -KITAGSADRFVYVWDT 295 (338)
T ss_pred -ccccccccceEEEeec
Confidence 8999999999999985
No 51
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-32 Score=210.70 Aligned_cols=241 Identities=20% Similarity=0.342 Sum_probs=204.7
Q ss_pred eeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEE
Q 041325 120 NVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQ 197 (450)
Q Consensus 120 ~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (450)
...+..|.++|.++.|+.++ .++++.|++|++|+...+ ..+
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg----------------~li--------------------- 52 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG----------------ALI--------------------- 52 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc----------------cee---------------------
Confidence 33567899999999999554 999999999999999888 233
Q ss_pred EeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCc
Q 041325 198 VRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTK 277 (450)
Q Consensus 198 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 277 (450)
.++.+|...|..++.+.|+..|++|+.|..+.+||+++|+.++.+. +|...|+.+.|+. ....+++|+.|..
T Consensus 53 ------ktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~r-gH~aqVNtV~fNe-esSVv~SgsfD~s 124 (307)
T KOG0316|consen 53 ------KTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFR-GHLAQVNTVRFNE-ESSVVASGSFDSS 124 (307)
T ss_pred ------eeecCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecc-cccceeeEEEecC-cceEEEeccccce
Confidence 3455899999999999999999999999999999999999999999 9999999999997 4448999999999
Q ss_pred EEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccC
Q 041325 278 IKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG 357 (450)
Q Consensus 278 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (450)
+++||.+... .++++.+......|.++... +..|++|+.||+++.||++.|+.. ...
T Consensus 125 ~r~wDCRS~s------~ePiQildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~l~-------------sDy-- 181 (307)
T KOG0316|consen 125 VRLWDCRSRS------FEPIQILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGTLS-------------SDY-- 181 (307)
T ss_pred eEEEEcccCC------CCccchhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecceee-------------hhh--
Confidence 9999998743 45788888888999999885 678999999999999999988743 223
Q ss_pred CccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEE--EEecCCCCCCCCCCCCceE
Q 041325 358 HTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLT--AVVDSDYSNRNSDHSSTSF 433 (450)
Q Consensus 358 ~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--~~~~~~~~~~~~~~~~~~~ 433 (450)
-..+|++++|+ ++..+.++.|+++++.|-.++ +.+..+++|...-..+. +.....
T Consensus 182 ~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG--------klL~sYkGhkn~eykldc~l~qsdt------------- 240 (307)
T KOG0316|consen 182 FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG--------KLLKSYKGHKNMEYKLDCCLNQSDT------------- 240 (307)
T ss_pred cCCcceeEEecCCCCEEEEeeccceeeecccchh--------HHHHHhcccccceeeeeeeecccce-------------
Confidence 34578888887 568999999999999998886 78888999987655444 334444
Q ss_pred EEEEcccCCcEEEEEe
Q 041325 434 LVYSGSLDCEIKIWQI 449 (450)
Q Consensus 434 ~l~s~~~Dg~i~iw~l 449 (450)
.+++|++||.|++|||
T Consensus 241 hV~sgSEDG~Vy~wdL 256 (307)
T KOG0316|consen 241 HVFSGSEDGKVYFWDL 256 (307)
T ss_pred eEEeccCCceEEEEEe
Confidence 8999999999999997
No 52
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=100.00 E-value=3.6e-32 Score=239.29 Aligned_cols=278 Identities=26% Similarity=0.513 Sum_probs=234.5
Q ss_pred cceeeeEEeecCCCcceEEEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEE-EEEeC-C
Q 041325 62 EHQCSATLKVKGNSSYIPSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKS-LVVLG-D 138 (450)
Q Consensus 62 ~~~~~~~l~~~~h~~~v~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~-~ 138 (450)
.+++-+.+. ||...|+.+++ ++..++++|.||++++|+-..++.+.. ..+.+|.+.|.. +++.+ +
T Consensus 3 ~Y~ls~~l~--gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~l~~----------~~~~~~~g~i~~~i~y~e~~ 70 (745)
T KOG0301|consen 3 QYKLSHELE--GHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQYLET----------HAFEGPKGFIANSICYAESD 70 (745)
T ss_pred cceeEEEec--cCccchheeEecCCeEEeecCCCCceeeeeccCcccccc----------eecccCcceeeccceecccc
Confidence 456777787 99999999999 788899999999999999877665543 235577777777 77764 2
Q ss_pred --eEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEE
Q 041325 139 --KLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSAL 216 (450)
Q Consensus 139 --~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 216 (450)
.+++|+.|++|.+|...+. .+...+.+|...|.++
T Consensus 71 ~~~l~~g~~D~~i~v~~~~~~-------------------------------------------~P~~~LkgH~snVC~l 107 (745)
T KOG0301|consen 71 KGRLVVGGMDTTIIVFKLSQA-------------------------------------------EPLYTLKGHKSNVCSL 107 (745)
T ss_pred CcceEeecccceEEEEecCCC-------------------------------------------Cchhhhhccccceeee
Confidence 2999999999999999887 2333455899999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchh
Q 041325 217 ALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSL 296 (450)
Q Consensus 217 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 296 (450)
+...++. +++|+.|.++++|-.. ++...++ +|...|+++...| ++.+++|+.|..|++|.- ...
T Consensus 108 s~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~-gH~asVWAv~~l~--e~~~vTgsaDKtIklWk~----------~~~ 171 (745)
T KOG0301|consen 108 SIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQ-GHTASVWAVASLP--ENTYVTGSADKTIKLWKG----------GTL 171 (745)
T ss_pred ecCCcCc-eEecccccceEEecch--hhhcccC-CcchheeeeeecC--CCcEEeccCcceeeeccC----------Cch
Confidence 9888887 9999999999999874 4555566 9999999999996 448999999999999974 237
Q ss_pred hhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEE
Q 041325 297 VQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFS 374 (450)
Q Consensus 297 ~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s 374 (450)
++++.+|...|+.+++-+++ .+++++.||.|+.|++ +++++ ..+.+|..-|.+++.. .+.+++
T Consensus 172 l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~-~ge~l-------------~~~~ghtn~vYsis~~~~~~~Ivs 236 (745)
T KOG0301|consen 172 LKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDL-DGEVL-------------LEMHGHTNFVYSISMALSDGLIVS 236 (745)
T ss_pred hhhhccchhheeeeEEecCC-CeEeecCCceEEEEec-cCcee-------------eeeeccceEEEEEEecCCCCeEEE
Confidence 89999999999999999764 5889999999999999 56655 6788999999999954 459999
Q ss_pred EeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 375 GSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 375 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+++|++++||+.. .+.+.+.-....|+++.+.+++. +++|+.||.||||..
T Consensus 237 ~gEDrtlriW~~~----------e~~q~I~lPttsiWsa~~L~NgD--------------Ivvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 237 TGEDRTLRIWKKD----------ECVQVITLPTTSIWSAKVLLNGD--------------IVVGGSDGRVRVFTV 287 (745)
T ss_pred ecCCceEEEeecC----------ceEEEEecCccceEEEEEeeCCC--------------EEEeccCceEEEEEe
Confidence 9999999999976 57788876677999999999998 999999999999975
No 53
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=2.3e-33 Score=236.86 Aligned_cols=255 Identities=21% Similarity=0.323 Sum_probs=214.4
Q ss_pred CCcceeEEecCCCceEEEEEeCCe---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeec
Q 041325 116 GDHANVVATGNGDAVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLA 192 (450)
Q Consensus 116 ~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (450)
+......+.+|+..|.++.|.|.. |++++.|+.|+||++-... .
T Consensus 203 Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~---------------~------------------ 249 (503)
T KOG0282|consen 203 PKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR---------------R------------------ 249 (503)
T ss_pred cHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCc---------------c------------------
Confidence 344556688999999999999844 9999999999999987641 2
Q ss_pred CceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEE
Q 041325 193 NNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTG 272 (450)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 272 (450)
...++.+|..+|.+++|+.+|..+++++.|+.|++||+++|+++..+. ....+.++.|+|++.+.+++|
T Consensus 250 ---------~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~--~~~~~~cvkf~pd~~n~fl~G 318 (503)
T KOG0282|consen 250 ---------CLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH--LDKVPTCVKFHPDNQNIFLVG 318 (503)
T ss_pred ---------eehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEe--cCCCceeeecCCCCCcEEEEe
Confidence 334556899999999999999999999999999999999999999997 667889999999887899999
Q ss_pred cCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeee
Q 041325 273 SADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLK 352 (450)
Q Consensus 273 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 352 (450)
+.|+.|+.||+++++ .++.+..|-+.|..+.|-++|+++++.+.|+.++||+.+.+..+ ...
T Consensus 319 ~sd~ki~~wDiRs~k--------vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~i----------k~i 380 (503)
T KOG0282|consen 319 GSDKKIRQWDIRSGK--------VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPI----------KNI 380 (503)
T ss_pred cCCCcEEEEeccchH--------HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccc----------hhh
Confidence 999999999999988 89999999999999999999999999999999999999876543 122
Q ss_pred ccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCC--cceEEEEEEecCCCCCCCCCCCC
Q 041325 353 GALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHR--RPVKCLTAVVDSDYSNRNSDHSS 430 (450)
Q Consensus 353 ~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~~~~~~~~~~~~~~~ 430 (450)
.....|+-+...+..++.++++-+.|+.|.++.+.. .........+.+|. +.-..+.|+||+.
T Consensus 381 ~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~-----~~r~nkkK~feGh~vaGys~~v~fSpDG~---------- 445 (503)
T KOG0282|consen 381 ADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVP-----PFRLNKKKRFEGHSVAGYSCQVDFSPDGR---------- 445 (503)
T ss_pred cchhhccCcceecCCCCCeehhhccCceEEEEeccc-----ccccCHhhhhcceeccCceeeEEEcCCCC----------
Confidence 333445555555555677999999999999998764 22234445667775 4466789999999
Q ss_pred ceEEEEEcccCCcEEEEEeC
Q 041325 431 TSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 431 ~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+|++|+.||.+.+||-+
T Consensus 446 ---~l~SGdsdG~v~~wdwk 462 (503)
T KOG0282|consen 446 ---TLCSGDSDGKVNFWDWK 462 (503)
T ss_pred ---eEEeecCCccEEEeech
Confidence 99999999999999964
No 54
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=8.7e-33 Score=226.41 Aligned_cols=280 Identities=23% Similarity=0.370 Sum_probs=217.8
Q ss_pred CCccceeeeEEeecCCCcceEEEEE---e--CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEE
Q 041325 59 AASEHQCSATLKVKGNSSYIPSLAI---A--GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSL 133 (450)
Q Consensus 59 ~~~~~~~~~~l~~~~h~~~v~~~~~---d--~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 133 (450)
+...+++..++. ||.++|.++++ | ...|++++.|.++++|..+.+....... ....||...|-++
T Consensus 130 Wd~~Gk~~~~~~--Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~--------~~~~GHk~~V~sV 199 (423)
T KOG0313|consen 130 WDLKGKSIKTIV--GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKAL--------KVCRGHKRSVDSV 199 (423)
T ss_pred EecCCceEEEEe--cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHH--------hHhcccccceeEE
Confidence 446678888888 99999999998 2 3469999999999999988776433211 1134999999999
Q ss_pred EEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCC
Q 041325 134 VVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVD 211 (450)
Q Consensus 134 ~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (450)
...+++ +++|+.|.+|++|+.+.................... ......+.+...+.+|..
T Consensus 200 sv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~------------------~~~~~~r~P~vtl~GHt~ 261 (423)
T KOG0313|consen 200 SVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKR------------------EKEGGTRTPLVTLEGHTE 261 (423)
T ss_pred EecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhh------------------hhcccccCceEEeccccc
Confidence 988666 999999999999994433211110000000000000 000112345567789999
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN 291 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 291 (450)
+|.++.|++ ...+++++.|.+|+.||+.++.....+. .....+++..+| ...+|++|+.|..+++||.+++.
T Consensus 262 ~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~--~~ksl~~i~~~~-~~~Ll~~gssdr~irl~DPR~~~---- 333 (423)
T KOG0313|consen 262 PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT--TNKSLNCISYSP-LSKLLASGSSDRHIRLWDPRTGD---- 333 (423)
T ss_pred ceeeEEEcC-CCceEeecccceEEEEEeecccceeeee--cCcceeEeeccc-ccceeeecCCCCceeecCCCCCC----
Confidence 999999998 6679999999999999999999988886 677899999998 45599999999999999998875
Q ss_pred ccchhhhhHhhcccceEEEEEcC-CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC-
Q 041325 292 KKHSLVQTLEKHKSAVTALALST-DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS- 369 (450)
Q Consensus 292 ~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 369 (450)
.....+.+.+|++.|.++.|+| +...|++|+.|+++++||+++.+. +...+.+|...|.++.|..
T Consensus 334 -gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~------------plydI~~h~DKvl~vdW~~~ 400 (423)
T KOG0313|consen 334 -GSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKA------------PLYDIAGHNDKVLSVDWNEG 400 (423)
T ss_pred -CceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCC------------cceeeccCCceEEEEeccCC
Confidence 2235667889999999999999 556789999999999999998651 2367889999999999995
Q ss_pred CeEEEEeCCCeEEEeeCC
Q 041325 370 NLLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 370 ~~l~s~~~dg~v~iwd~~ 387 (450)
.+|++|+.|..|+|+.-.
T Consensus 401 ~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 401 GLIVSGGADNKLRIFKGS 418 (423)
T ss_pred ceEEeccCcceEEEeccc
Confidence 599999999999999754
No 55
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=4.3e-32 Score=216.77 Aligned_cols=299 Identities=17% Similarity=0.298 Sum_probs=225.9
Q ss_pred cCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCc------eeeeecCCCCcceeEEecCCCceEEEEEeCCe--EE
Q 041325 72 KGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNY------VNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LF 141 (450)
Q Consensus 72 ~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~------~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~ 141 (450)
..|..++++-+| ||.++|||+.|-.|+|.|++.... +..........-.-.+..|.+.|+++.|+|.. |+
T Consensus 109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILi 188 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILI 188 (430)
T ss_pred eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEE
Confidence 389999999999 899999999999999999873211 11111111222334577899999999999877 99
Q ss_pred EEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC
Q 041325 142 SAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD 221 (450)
Q Consensus 142 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 221 (450)
+|+.|++|+++|+...... .... ......+|.++.|+|.
T Consensus 189 S~srD~tvKlFDfsK~saK-------------rA~K----------------------------~~qd~~~vrsiSfHPs 227 (430)
T KOG0640|consen 189 SGSRDNTVKLFDFSKTSAK-------------RAFK----------------------------VFQDTEPVRSISFHPS 227 (430)
T ss_pred eccCCCeEEEEecccHHHH-------------HHHH----------------------------HhhccceeeeEeecCC
Confidence 9999999999999765221 0011 1123458999999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCeEEEEee--cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhh
Q 041325 222 GSLLYSTSWDRTFKIWRTSDFRCLESVK--NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQT 299 (450)
Q Consensus 222 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 299 (450)
|.+++.|....++++||+++.++...-. ..|.+.|+++.+++.. .+.++++.||.|++||--.++ ++.+
T Consensus 228 GefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~-~lYvTaSkDG~IklwDGVS~r--------Cv~t 298 (430)
T KOG0640|consen 228 GEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTG-SLYVTASKDGAIKLWDGVSNR--------CVRT 298 (430)
T ss_pred CceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCc-cEEEEeccCCcEEeeccccHH--------HHHH
Confidence 9999999999999999999988876543 3688999999999844 489999999999999976665 6666
Q ss_pred Hhh-c-ccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEE
Q 041325 300 LEK-H-KSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSG 375 (450)
Q Consensus 300 ~~~-~-~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~ 375 (450)
+.. | .+.|.+..|..+|+++++.+.|..+++|.+.+++.+......... +...--+...|+ .++++.-
T Consensus 299 ~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~t--------grq~~rtqAvFNhtEdyVl~p 370 (430)
T KOG0640|consen 299 IGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTT--------GRQKHRTQAVFNHTEDYVLFP 370 (430)
T ss_pred HHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcc--------cchhhhhhhhhcCccceEEcc
Confidence 543 3 357999999999999999999999999999999887533322111 001111233344 3455544
Q ss_pred e-CCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 376 S-SDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 376 ~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
. ..+.+.-||.++.. +.-..-.+|++.+..+.-+|.+. .++|||.|-.+|+|-
T Consensus 371 DEas~slcsWdaRtad-------r~~l~slgHn~a~R~i~HSP~~p-------------~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 371 DEASNSLCSWDARTAD-------RVALLSLGHNGAVRWIVHSPVEP-------------AFMTCSDDFRARFWY 424 (430)
T ss_pred ccccCceeeccccchh-------hhhhcccCCCCCceEEEeCCCCC-------------ceeeecccceeeeee
Confidence 4 35679999998751 22223357999999999999999 899999999999995
No 56
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1e-33 Score=230.52 Aligned_cols=282 Identities=17% Similarity=0.307 Sum_probs=229.3
Q ss_pred eeeEEeecCCCcceEEEEEeC---CEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEE
Q 041325 65 CSATLKVKGNSSYIPSLAIAG---KLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLF 141 (450)
Q Consensus 65 ~~~~l~~~~h~~~v~~~~~d~---~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~ 141 (450)
.+..|. ||.+.|.|++-+. ..+|+|+.||.|+|||+....+... +..|.+.|..|++....++
T Consensus 58 Fv~~L~--gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~------------f~AH~G~V~Gi~v~~~~~~ 123 (433)
T KOG0268|consen 58 FVGSLD--GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT------------FKAHEGLVRGICVTQTSFF 123 (433)
T ss_pred chhhcc--ccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe------------eecccCceeeEEecccceE
Confidence 345566 9999999999953 5689999999999999998887776 7899999999999998899
Q ss_pred EEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC
Q 041325 142 SAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD 221 (450)
Q Consensus 142 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 221 (450)
+++.|++|+.|.++... +.++ .....+..+.-+..
T Consensus 124 tvgdDKtvK~wk~~~~p-----------------~~ti----------------------------lg~s~~~gIdh~~~ 158 (433)
T KOG0268|consen 124 TVGDDKTVKQWKIDGPP-----------------LHTI----------------------------LGKSVYLGIDHHRK 158 (433)
T ss_pred EecCCcceeeeeccCCc-----------------ceee----------------------------eccccccccccccc
Confidence 99999999999987631 0000 12335667777777
Q ss_pred CCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHh
Q 041325 222 GSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLE 301 (450)
Q Consensus 222 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 301 (450)
+..+++++ ..|.|||.....++..+. -....|.++.|+|....+|++++.|+.|.+||+++.. +++...
T Consensus 159 ~~~FaTcG--e~i~IWD~~R~~Pv~sms-wG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~--------Pl~KVi 227 (433)
T KOG0268|consen 159 NSVFATCG--EQIDIWDEQRDNPVSSMS-WGADSISSVKFNPVETSILASCASDRSIVLYDLRQAS--------PLKKVI 227 (433)
T ss_pred cccccccC--ceeeecccccCCccceee-cCCCceeEEecCCCcchheeeeccCCceEEEecccCC--------ccceee
Confidence 88899888 469999999888998887 5567899999999888889999999999999998876 444443
Q ss_pred hcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCC
Q 041325 302 KHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDN 379 (450)
Q Consensus 302 ~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg 379 (450)
....-+.|+|+|.+-.+++|++|..++.||++.... +.....+|.+.|+.+.|+ |+-+++||.|.
T Consensus 228 -~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~------------p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk 294 (433)
T KOG0268|consen 228 -LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSR------------PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK 294 (433)
T ss_pred -eeccccceecCccccceeeccccccceehhhhhhcc------------cchhhcccceeEEEeccCCCcchhccccccc
Confidence 234457899999888899999999999999986542 346788999999999998 56999999999
Q ss_pred eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 380 TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 380 ~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+|+||..+.+... .+. ....-..|.++.|+.|.+ ++++||+|+.|++|.-
T Consensus 295 sIRIf~~~~~~SR------diY-htkRMq~V~~Vk~S~Dsk-------------yi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 295 SIRIFPVNHGHSR------DIY-HTKRMQHVFCVKYSMDSK-------------YIISGSDDGNVRLWKA 344 (433)
T ss_pred eEEEeecCCCcch------hhh-hHhhhheeeEEEEecccc-------------EEEecCCCcceeeeec
Confidence 9999999865211 010 011234699999999999 9999999999999974
No 57
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-32 Score=248.55 Aligned_cols=286 Identities=20% Similarity=0.311 Sum_probs=209.1
Q ss_pred cCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCc------------ccccceee-----eeeccCCCcc
Q 041325 125 GNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGK------------LKNKYYER-----IATLPTLNDR 185 (450)
Q Consensus 125 ~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~------------~~~~~~~~-----~~~~~~~~~~ 185 (450)
.|.+.|+++.|++|+ ||+||.||.|+||.+............. ..+..... -.........
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 899999999999887 9999999999999987732211000000 00000000 0000000000
Q ss_pred eeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecC
Q 041325 186 FTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSN 265 (450)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 265 (450)
......+...-.+...+.+.+.+|.+.|.++.|+.++ +|++++.|.+|++|++...+|+..|. |.+.|+||+|+|.+
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~-fLLSSSMDKTVRLWh~~~~~CL~~F~--HndfVTcVaFnPvD 421 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN-FLLSSSMDKTVRLWHPGRKECLKVFS--HNDFVTCVAFNPVD 421 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCC-eeEeccccccEEeecCCCcceeeEEe--cCCeeEEEEecccC
Confidence 0001222233344567788899999999999999765 79999999999999999999999996 99999999999999
Q ss_pred CcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCC
Q 041325 266 DGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDD 345 (450)
Q Consensus 266 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 345 (450)
++++++|+-||.||||++...+ .+. +.....-|++++|.|||++.++|+.+|..++|+....+......-
T Consensus 422 DryFiSGSLD~KvRiWsI~d~~--------Vv~-W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I- 491 (712)
T KOG0283|consen 422 DRYFISGSLDGKVRLWSISDKK--------VVD-WNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHI- 491 (712)
T ss_pred CCcEeecccccceEEeecCcCe--------eEe-ehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeE-
Confidence 9999999999999999997665 333 333458899999999999999999999999999998776532111
Q ss_pred CCceeeec-cccCCccceEEEEEe---CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCc--ceEEEEEEecC
Q 041325 346 SGHMVLKG-ALRGHTKAILCLAVV---SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRR--PVKCLTAVVDS 419 (450)
Q Consensus 346 ~~~~~~~~-~~~~~~~~v~~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~ 419 (450)
.... .-..|. .|+++.+. ++.+++.+.|..|||+|.+.. .++..++|+.. .-....|+.||
T Consensus 492 ----~~~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~--------~lv~KfKG~~n~~SQ~~Asfs~Dg 558 (712)
T KOG0283|consen 492 ----RLHNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK--------DLVHKFKGFRNTSSQISASFSSDG 558 (712)
T ss_pred ----eeccCccccCc-eeeeeEecCCCCCeEEEecCCCceEEEeccch--------hhhhhhcccccCCcceeeeEccCC
Confidence 1111 112233 89999997 346888899999999999652 55666666543 23456788898
Q ss_pred CCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 420 DYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 420 ~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+ +|+++++|..|+||++
T Consensus 559 k-------------~IVs~seDs~VYiW~~ 575 (712)
T KOG0283|consen 559 K-------------HIVSASEDSWVYIWKN 575 (712)
T ss_pred C-------------EEEEeecCceEEEEeC
Confidence 8 9999999999999996
No 58
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.5e-32 Score=230.92 Aligned_cols=277 Identities=21% Similarity=0.349 Sum_probs=228.6
Q ss_pred cccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCC
Q 041325 28 SELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPN 105 (450)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~ 105 (450)
...+++++.|+|..| ..++.+++.+.++++.......+++. -....|.++.| ||++||+|...|.|+|+|..+.
T Consensus 25 e~~~vssl~fsp~~P--~d~aVt~S~rvqly~~~~~~~~k~~s--rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r 100 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHP--YDFAVTSSVRVQLYSSVTRSVRKTFS--RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR 100 (487)
T ss_pred ccCcceeEecCCCCC--CceEEecccEEEEEecchhhhhhhHH--hhccceeEEEeecCCeEEEccCCcCcEEEeccccH
Confidence 355667788877765 56888999999999999999999888 78899999999 8999999999999999997665
Q ss_pred CceeeeecCCCCcceeEEecCCCceEEEEEeCCe---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCC
Q 041325 106 NYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTL 182 (450)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (450)
..+.. +.+|..+|..+.|++.. +++|+.|+.+++||+.+..
T Consensus 101 ~iLR~------------~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~------------------------ 144 (487)
T KOG0310|consen 101 VILRQ------------LYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY------------------------ 144 (487)
T ss_pred HHHHH------------HhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE------------------------
Confidence 54444 77999999999999665 8999999999999999872
Q ss_pred CcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCCC-eEEEEeecccccceEEEE
Q 041325 183 NDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSDF-RCLESVKNAHDDAINAIV 260 (450)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~ 260 (450)
....+.+|++.|.|.+|+| ++.++++|+.||.|++||++.. ..+.++. |..+|..+.
T Consensus 145 -------------------v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln--hg~pVe~vl 203 (487)
T KOG0310|consen 145 -------------------VQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN--HGCPVESVL 203 (487)
T ss_pred -------------------EEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEec--CCCceeeEE
Confidence 1223457999999999999 5668999999999999999987 5666664 999999999
Q ss_pred EeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceee
Q 041325 261 VSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIV 340 (450)
Q Consensus 261 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~ 340 (450)
+.|.+ ..+++++. ..|++||+.++. +.+..+..|...|+|+++..++..|++|+-|+.+++||+.+-+.+
T Consensus 204 ~lpsg-s~iasAgG-n~vkVWDl~~G~-------qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv- 273 (487)
T KOG0310|consen 204 ALPSG-SLIASAGG-NSVKVWDLTTGG-------QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVV- 273 (487)
T ss_pred EcCCC-CEEEEcCC-CeEEEEEecCCc-------eehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEE-
Confidence 99843 46777665 579999997554 255556669999999999999999999999999999998766544
Q ss_pred eCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEEeeCCC
Q 041325 341 DGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~ 388 (450)
..+ ...++|.+++.++ +.++.|..||.+.+=+...
T Consensus 274 ------------~s~-~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 274 ------------HSW-KYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREV 310 (487)
T ss_pred ------------Eee-ecccceeeEEecCCCceEEEecccceeeeehhhc
Confidence 222 3468899999886 5999999999987775444
No 59
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=6.1e-33 Score=223.06 Aligned_cols=298 Identities=21% Similarity=0.307 Sum_probs=239.5
Q ss_pred cceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe
Q 041325 62 EHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK 139 (450)
Q Consensus 62 ~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 139 (450)
+-++.+++++ |..+.+-|..| ||++|++|+.||.|.|||..+++..+-.+.... -.+..+..+|.|+.|+.|.
T Consensus 201 Pt~l~r~IKF-g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAq----d~fMMmd~aVlci~FSRDs 275 (508)
T KOG0275|consen 201 PTQLARSIKF-GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQ----DNFMMMDDAVLCISFSRDS 275 (508)
T ss_pred hHHhhhheec-ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhh----cceeecccceEEEeecccH
Confidence 3456667775 77788889999 999999999999999999999886544322211 1256788999999999877
Q ss_pred --EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEE
Q 041325 140 --LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALA 217 (450)
Q Consensus 140 --l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 217 (450)
+++|+.||.|++|.++++ .|+..+. ..|+..|+|+.
T Consensus 276 EMlAsGsqDGkIKvWri~tG----------------~ClRrFd--------------------------rAHtkGvt~l~ 313 (508)
T KOG0275|consen 276 EMLASGSQDGKIKVWRIETG----------------QCLRRFD--------------------------RAHTKGVTCLS 313 (508)
T ss_pred HHhhccCcCCcEEEEEEecc----------------hHHHHhh--------------------------hhhccCeeEEE
Confidence 999999999999999999 4444433 15999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhh
Q 041325 218 LSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLV 297 (450)
Q Consensus 218 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 297 (450)
|+.|+..+++++.|.++++.-+.+|+++..++ +|.+.|+...|.++ +..+++++.||+|++|+..+.+ ++
T Consensus 314 FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfr-GHsSyvn~a~ft~d-G~~iisaSsDgtvkvW~~Ktte--------C~ 383 (508)
T KOG0275|consen 314 FSRDNSQILSASFDQTVRIHGLKSGKCLKEFR-GHSSYVNEATFTDD-GHHIISASSDGTVKVWHGKTTE--------CL 383 (508)
T ss_pred EccCcchhhcccccceEEEeccccchhHHHhc-CccccccceEEcCC-CCeEEEecCCccEEEecCcchh--------hh
Confidence 99999999999999999999999999999999 99999999999984 4489999999999999998877 55
Q ss_pred hhHhh--cccceEEEEEcC-CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccc-eEE-EEEeCCeE
Q 041325 298 QTLEK--HKSAVTALALST-DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA-ILC-LAVVSNLL 372 (450)
Q Consensus 298 ~~~~~--~~~~i~~l~~~~-~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~-~~~~~~~l 372 (450)
.+++. ...+|.++-.-| +...++++...++|+|.++.. +.+..+... +...+. |.| ++..|+++
T Consensus 384 ~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG-QvVrsfsSG----------kREgGdFi~~~lSpkGewi 452 (508)
T KOG0275|consen 384 STFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG-QVVRSFSSG----------KREGGDFINAILSPKGEWI 452 (508)
T ss_pred hhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc-eEEeeeccC----------CccCCceEEEEecCCCcEE
Confidence 55543 445778887777 556888898999999998863 322111110 011122 322 33347799
Q ss_pred EEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 373 FSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 373 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
.+.+.|+.++.|.+.++ +....+.-|...|..++-+|..+ ++++-+.||.+++|.
T Consensus 453 YcigED~vlYCF~~~sG--------~LE~tl~VhEkdvIGl~HHPHqN-------------llAsYsEDgllKLWk 507 (508)
T KOG0275|consen 453 YCIGEDGVLYCFSVLSG--------KLERTLPVHEKDVIGLTHHPHQN-------------LLASYSEDGLLKLWK 507 (508)
T ss_pred EEEccCcEEEEEEeecC--------ceeeeeecccccccccccCcccc-------------hhhhhcccchhhhcC
Confidence 99999999999999986 66778888999999999999999 999999999999995
No 60
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.3e-31 Score=209.96 Aligned_cols=211 Identities=28% Similarity=0.486 Sum_probs=187.9
Q ss_pred eeeecCCCceEEEEEccC-CCEEEEEeCCCcEEEEecCC---CeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEE
Q 041325 204 CTWVHHVDTVSALALSSD-GSLLYSTSWDRTFKIWRTSD---FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIK 279 (450)
Q Consensus 204 ~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 279 (450)
..+.+|.+.+..++|+|- |..|++|+.|..|++|+... ..+...+..+|+..|.+++|+|.+. +|++++.|.++.
T Consensus 8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~-~La~aSFD~t~~ 86 (312)
T KOG0645|consen 8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR-YLASASFDATVV 86 (312)
T ss_pred EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc-EEEEeeccceEE
Confidence 355689999999999997 89999999999999999984 5666777778999999999999655 999999999999
Q ss_pred EEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCc
Q 041325 280 VWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT 359 (450)
Q Consensus 280 vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (450)
||.-..+ .++.+..+++|+..|.+++|+++|++||+++.|..|-||.+.... .......+..|.
T Consensus 87 Iw~k~~~------efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd----------Efec~aVL~~Ht 150 (312)
T KOG0645|consen 87 IWKKEDG------EFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD----------EFECIAVLQEHT 150 (312)
T ss_pred EeecCCC------ceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC----------cEEEEeeecccc
Confidence 9986543 345788999999999999999999999999999999999998543 345678899999
Q ss_pred cceEEEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEE
Q 041325 360 KAILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYS 437 (450)
Q Consensus 360 ~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s 437 (450)
..|..+.|+| ++|++++.|++|++|+-.. ...+.++..+.+|...|.+++|.+.|. .|++
T Consensus 151 qDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~-----dddW~c~~tl~g~~~TVW~~~F~~~G~-------------rl~s 212 (312)
T KOG0645|consen 151 QDVKHVIWHPTEDLLFSCSYDNTIKVYRDED-----DDDWECVQTLDGHENTVWSLAFDNIGS-------------RLVS 212 (312)
T ss_pred ccccEEEEcCCcceeEEeccCCeEEEEeecC-----CCCeeEEEEecCccceEEEEEecCCCc-------------eEEE
Confidence 9999999998 6999999999999998763 335899999999999999999999998 8999
Q ss_pred cccCCcEEEEEe
Q 041325 438 GSLDCEIKIWQI 449 (450)
Q Consensus 438 ~~~Dg~i~iw~l 449 (450)
+++|++|+||.+
T Consensus 213 ~sdD~tv~Iw~~ 224 (312)
T KOG0645|consen 213 CSDDGTVSIWRL 224 (312)
T ss_pred ecCCcceEeeee
Confidence 999999999974
No 61
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=100.00 E-value=1.8e-31 Score=243.64 Aligned_cols=249 Identities=27% Similarity=0.473 Sum_probs=221.2
Q ss_pred CCCCCccceeeeE-EeecCCCcceEEEEEe--CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEE
Q 041325 56 QAPAASEHQCSAT-LKVKGNSSYIPSLAIA--GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKS 132 (450)
Q Consensus 56 ~~~~~~~~~~~~~-l~~~~h~~~v~~~~~d--~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 132 (450)
..+...++..+.+ +. ||.+.|.++++. +.+|++|+.|.+++|||..++++... +.+|.+.|.+
T Consensus 231 ~~~~~~~~~~i~~~l~--GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~------------l~gh~stv~~ 296 (537)
T KOG0274|consen 231 HLWDLNNGYLILTRLV--GHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHS------------LQGHTSSVRC 296 (537)
T ss_pred EEeecccceEEEeecc--CCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEE------------ecCCCceEEE
Confidence 4566666777777 88 999999999996 99999999999999999999999887 7899999999
Q ss_pred EEEeCCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCc
Q 041325 133 LVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDT 212 (450)
Q Consensus 133 l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (450)
+...+..+++|+.|.+|++|++++++ ++. .+.+|.++
T Consensus 297 ~~~~~~~~~sgs~D~tVkVW~v~n~~----------------~l~---------------------------l~~~h~~~ 333 (537)
T KOG0274|consen 297 LTIDPFLLVSGSRDNTVKVWDVTNGA----------------CLN---------------------------LLRGHTGP 333 (537)
T ss_pred EEccCceEeeccCCceEEEEeccCcc----------------eEE---------------------------Eecccccc
Confidence 99999999999999999999999882 222 23359999
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcch-hhhcc
Q 041325 213 VSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA-ALQVN 291 (450)
Q Consensus 213 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~~~~~ 291 (450)
|+++..+ +.++++|+.|++|++||+.+++++..+. +|...|.++.+.. ...+++|+.|+.|++||+++. +
T Consensus 334 V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~-gH~~~V~sl~~~~--~~~~~Sgs~D~~IkvWdl~~~~~---- 404 (537)
T KOG0274|consen 334 VNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLS-GHTGRVYSLIVDS--ENRLLSGSLDTTIKVWDLRTKRK---- 404 (537)
T ss_pred EEEEEec--CCEEEEEecCceEEEEEhhhceeeeeec-CCcceEEEEEecC--cceEEeeeeccceEeecCCchhh----
Confidence 9999998 8899999999999999999999999999 8999999998863 269999999999999999887 5
Q ss_pred ccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccC-CccceEEEEEeCC
Q 041325 292 KKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG-HTKAILCLAVVSN 370 (450)
Q Consensus 292 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~ 370 (450)
++..+.+|.+-+..+.+ .+++|++++.|+.|++||..+++++ ..+.+ |...|.++++...
T Consensus 405 ----c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~-------------~~~~~~~~~~v~~l~~~~~ 465 (537)
T KOG0274|consen 405 ----CIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECL-------------RTLEGRHVGGVSALALGKE 465 (537)
T ss_pred ----hhhhhcCCccccccccc--ccceeEeccccccEEEeecccCcee-------------eeeccCCcccEEEeecCcc
Confidence 89999999998877766 5789999999999999999998866 45555 6788999988877
Q ss_pred eEEEEeCCCeEEEeeCCCC
Q 041325 371 LLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 371 ~l~s~~~dg~v~iwd~~~~ 389 (450)
.+++++.||.+++||++++
T Consensus 466 ~il~s~~~~~~~l~dl~~~ 484 (537)
T KOG0274|consen 466 EILCSSDDGSVKLWDLRSG 484 (537)
T ss_pred eEEEEecCCeeEEEecccC
Confidence 9999999999999999986
No 62
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-32 Score=212.28 Aligned_cols=240 Identities=19% Similarity=0.258 Sum_probs=201.3
Q ss_pred CCCcceEEEEE---eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---EEEEeCC
Q 041325 73 GNSSYIPSLAI---AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---LFSAHQD 146 (450)
Q Consensus 73 ~h~~~v~~~~~---d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~d 146 (450)
.-.+.+..++| ..+.+++++.||++++||+.... .+...++.|...|.++.|++.. +++++.|
T Consensus 58 d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s-----------~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD 126 (311)
T KOG0277|consen 58 DTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPS-----------KPIHKFKEHKREVYSVDWNTVRRRIFLTSSWD 126 (311)
T ss_pred ecccceeEeeecCCCcceEEEEecCceEEEeccCCCC-----------cchhHHHhhhhheEEeccccccceeEEeeccC
Confidence 46778999999 47899999999999999954322 1233478999999999998543 8888999
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLL 225 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l 225 (450)
++|++|+..... ...++.+|...|...+|+| .++++
T Consensus 127 ~TiKLW~~~r~~-------------------------------------------Sv~Tf~gh~~~Iy~a~~sp~~~nlf 163 (311)
T KOG0277|consen 127 GTIKLWDPNRPN-------------------------------------------SVQTFNGHNSCIYQAAFSPHIPNLF 163 (311)
T ss_pred CceEeecCCCCc-------------------------------------------ceEeecCCccEEEEEecCCCCCCeE
Confidence 999999998772 3334568999999999999 78999
Q ss_pred EEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhccc
Q 041325 226 YSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS 305 (450)
Q Consensus 226 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 305 (450)
++++.|+.+++||++.......+. .|...+.++.|+..+.+++++|+.|+.|+.||+++-+ .++..+.+|.-
T Consensus 164 as~Sgd~~l~lwdvr~~gk~~~i~-ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r-------~pl~eL~gh~~ 235 (311)
T KOG0277|consen 164 ASASGDGTLRLWDVRSPGKFMSIE-AHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR-------TPLFELNGHGL 235 (311)
T ss_pred EEccCCceEEEEEecCCCceeEEE-eccceeEeecccccCCcEEEecCCCceEEEEehhhcc-------ccceeecCCce
Confidence 999999999999998754444466 7889999999999888899999999999999998755 36778899999
Q ss_pred ceEEEEEcCC-CCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe---CCeEEEEeCCCeE
Q 041325 306 AVTALALSTD-GTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV---SNLLFSGSSDNTI 381 (450)
Q Consensus 306 ~i~~l~~~~~-~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~v 381 (450)
.|..++|+|. ..+|++++.|-+++|||...+.- .......|+.-+..+.|+ +.++|+++.|+.+
T Consensus 236 AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds------------~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 236 AVRKVKFSPHHASLLASASYDMTVRIWDPERQDS------------AIETVDHHTEFVCGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred EEEEEecCcchhhHhhhccccceEEecccccchh------------hhhhhhccceEEeccccccccCceeeecccccce
Confidence 9999999994 46899999999999999985432 335666788889999987 6699999999999
Q ss_pred EEeeC
Q 041325 382 RIWRR 386 (450)
Q Consensus 382 ~iwd~ 386 (450)
+||+.
T Consensus 304 ~Vw~p 308 (311)
T KOG0277|consen 304 YVWNP 308 (311)
T ss_pred eeecc
Confidence 99984
No 63
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.5e-31 Score=245.39 Aligned_cols=243 Identities=29% Similarity=0.486 Sum_probs=203.7
Q ss_pred cCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecc
Q 041325 125 GNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHK 202 (450)
Q Consensus 125 ~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (450)
.|...|.++.|++++ +++++.|+.+++|+...... ..
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-----------------------------------------~~ 195 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-----------------------------------------NL 195 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-----------------------------------------hh
Confidence 347899999999877 99999999999999965520 01
Q ss_pred eeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEec-CCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEE
Q 041325 203 KCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRT-SDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVW 281 (450)
Q Consensus 203 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw 281 (450)
...+.+|...|.+++|+|+++++++++.|++|++||+ ..+..++.+. +|...|++++|+|.+ +++++|+.|+.|++|
T Consensus 196 ~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~-gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriW 273 (456)
T KOG0266|consen 196 LRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLK-GHSTYVTSVAFSPDG-NLLVSGSDDGTVRIW 273 (456)
T ss_pred hccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEec-CCCCceEEEEecCCC-CEEEEecCCCcEEEE
Confidence 1222479999999999999999999999999999999 5558888888 999999999999976 799999999999999
Q ss_pred eCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCcc-
Q 041325 282 KKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK- 360 (450)
Q Consensus 282 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 360 (450)
|+++++ +...+.+|...|++++|++++++|++++.|+.|++||+.++... ....+..+..
T Consensus 274 d~~~~~--------~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~-----------~~~~~~~~~~~ 334 (456)
T KOG0266|consen 274 DVRTGE--------CVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL-----------CLKLLSGAENS 334 (456)
T ss_pred eccCCe--------EEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee-----------eeecccCCCCC
Confidence 998866 88899999999999999999999999999999999999988721 1134444444
Q ss_pred -ceEEEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcce---EEEEEEecCCCCCCCCCCCCceEE
Q 041325 361 -AILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPV---KCLTAVVDSDYSNRNSDHSSTSFL 434 (450)
Q Consensus 361 -~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v---~~l~~~~~~~~~~~~~~~~~~~~~ 434 (450)
+++++.|++ .++++++.|+.+++||+..+ .+...+.+|...+ .+...++.+. +
T Consensus 335 ~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~ 393 (456)
T KOG0266|consen 335 APVTSVQFSPNGKYLLSASLDRTLKLWDLRSG--------KSVGTYTGHSNLVRCIFSPTLSTGGK-------------L 393 (456)
T ss_pred CceeEEEECCCCcEEEEecCCCeEEEEEccCC--------cceeeecccCCcceeEecccccCCCC-------------e
Confidence 489999984 49999999999999999975 6777788887753 3334445555 9
Q ss_pred EEEcccCCcEEEEEeC
Q 041325 435 VYSGSLDCEIKIWQIR 450 (450)
Q Consensus 435 l~s~~~Dg~i~iw~l~ 450 (450)
+++|+.|+.|++|++.
T Consensus 394 i~sg~~d~~v~~~~~~ 409 (456)
T KOG0266|consen 394 IYSGSEDGSVYVWDSS 409 (456)
T ss_pred EEEEeCCceEEEEeCC
Confidence 9999999999999973
No 64
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9e-31 Score=209.64 Aligned_cols=270 Identities=19% Similarity=0.309 Sum_probs=209.9
Q ss_pred ccceeeeEEeecCCCcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-
Q 041325 61 SEHQCSATLKVKGNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK- 139 (450)
Q Consensus 61 ~~~~~~~~l~~~~h~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~- 139 (450)
..+.+...|.++.|.++|++++.++.++|+|+.|-+|+|||+........ +..|.+.|+++.|.+..
T Consensus 29 ~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~qlg~------------ll~HagsitaL~F~~~~S 96 (362)
T KOG0294|consen 29 VKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRKQLGI------------LLSHAGSITALKFYPPLS 96 (362)
T ss_pred cceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccchhhhcc------------eeccccceEEEEecCCcc
Confidence 33445556666699999999999999999999999999999988775554 67899999999998655
Q ss_pred ---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEE
Q 041325 140 ---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSAL 216 (450)
Q Consensus 140 ---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 216 (450)
|++|+.||.|.+|+...- ..+ ..+..|.+.|+.+
T Consensus 97 ~shLlS~sdDG~i~iw~~~~W----------------~~~---------------------------~slK~H~~~Vt~l 133 (362)
T KOG0294|consen 97 KSHLLSGSDDGHIIIWRVGSW----------------ELL---------------------------KSLKAHKGQVTDL 133 (362)
T ss_pred hhheeeecCCCcEEEEEcCCe----------------EEe---------------------------eeeccccccccee
Confidence 999999999999999865 222 2345799999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchh
Q 041325 217 ALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSL 296 (450)
Q Consensus 217 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 296 (450)
+++|.+++.++.+.|+.+++||+-+|+.-..+...+ ....+.|+|.++ +++.+..+ .|-+|.+.+.. .
T Consensus 134 siHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~--~at~v~w~~~Gd-~F~v~~~~-~i~i~q~d~A~--------v 201 (362)
T KOG0294|consen 134 SIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN--KATLVSWSPQGD-HFVVSGRN-KIDIYQLDNAS--------V 201 (362)
T ss_pred EecCCCceEEEEcCCceeeeehhhcCccceeeccCC--cceeeEEcCCCC-EEEEEecc-EEEEEecccHh--------H
Confidence 999999999999999999999999998766665333 345599998665 56666664 48899986655 3
Q ss_pred hhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC----eE
Q 041325 297 VQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN----LL 372 (450)
Q Consensus 297 ~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~l 372 (450)
...+. ....+.++.|. ++..|++|..|+.|.+||..+..+. ..+.+|...|.++.+..+ +|
T Consensus 202 ~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~-------------~~~~AH~~RVK~i~~~~~~~~~~l 266 (362)
T KOG0294|consen 202 FREIE-NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPL-------------TEFLAHENRVKDIASYTNPEHEYL 266 (362)
T ss_pred hhhhh-ccccceeeeec-CCceEEEecCCceEEEeccCCCccc-------------eeeecchhheeeeEEEecCCceEE
Confidence 44433 33557777776 6778999999999999999976544 788999999999996533 99
Q ss_pred EEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEE
Q 041325 373 FSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAV 416 (450)
Q Consensus 373 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 416 (450)
+|+|.||.|++||++.... .+...+..+.. ...++|+...
T Consensus 267 vTaSSDG~I~vWd~~~~~k---~~~~~l~e~n~-~~RltCl~~~ 306 (362)
T KOG0294|consen 267 VTASSDGFIKVWDIDMETK---KRPTLLAELNT-NVRLTCLRVK 306 (362)
T ss_pred EEeccCceEEEEEcccccc---CCcceeEEeec-CCccceeeeh
Confidence 9999999999999986421 22234444432 4556666543
No 65
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=3.3e-32 Score=245.39 Aligned_cols=256 Identities=18% Similarity=0.298 Sum_probs=194.0
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCce-----------------------eee----------------
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYV-----------------------NIT---------------- 111 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~-----------------------~~~---------------- 111 (450)
+|.+.|.++.| ||+|||+|+.||.|+||.+...+.. ...
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 89999999999 9999999999999999987651000 000
Q ss_pred ---------ecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccC
Q 041325 112 ---------STDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPT 181 (450)
Q Consensus 112 ---------~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (450)
.......+...+.||.+.|.+|.|+.++ |++++.|++||+|++... .|+..+.
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~----------------~CL~~F~- 407 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRK----------------ECLKVFS- 407 (712)
T ss_pred CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCc----------------ceeeEEe-
Confidence 0000112334577999999999999666 999999999999999988 6666664
Q ss_pred CCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEE
Q 041325 182 LNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIV 260 (450)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~ 260 (450)
|.+-|+|++|+| |.++|++|+-||.||||++...+.+.-.. ...-|++++
T Consensus 408 ---------------------------HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D--l~~lITAvc 458 (712)
T KOG0283|consen 408 ---------------------------HNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND--LRDLITAVC 458 (712)
T ss_pred ---------------------------cCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehh--hhhhheeEE
Confidence 999999999999 89999999999999999999877666554 558999999
Q ss_pred EeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCC-CCEEEEeeCCCcEEEEEcCCCcee
Q 041325 261 VSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTD-GTVLYSGACDRSILVWERDQGNYI 339 (450)
Q Consensus 261 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~~g~~dg~i~vwd~~~~~~~ 339 (450)
+.|+ ++..++|+.+|.+++|+....+............-+.....|+.+.|.|. ...+++.+.|..|+|||.++.+.+
T Consensus 459 y~Pd-Gk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv 537 (712)
T KOG0283|consen 459 YSPD-GKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLV 537 (712)
T ss_pred eccC-CceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhh
Confidence 9996 55899999999999999877663322211111111112237999999983 346888889999999999876544
Q ss_pred eeCCCCCCceeeeccccCCccc---e-EEEEEeCCeEEEEeCCCeEEEeeCCC
Q 041325 340 VDGDDDSGHMVLKGALRGHTKA---I-LCLAVVSNLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~---v-~~~~~~~~~l~s~~~dg~v~iwd~~~ 388 (450)
..++++... + .++.-+|++|++++.|..|++|++..
T Consensus 538 -------------~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 538 -------------HKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred -------------hhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 344443222 2 23333588999999999999999743
No 66
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=6.2e-31 Score=259.48 Aligned_cols=276 Identities=18% Similarity=0.284 Sum_probs=214.3
Q ss_pred CCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCccccc
Q 041325 94 NGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNK 171 (450)
Q Consensus 94 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 171 (450)
+|.+++|+............. .+..|.+.|.+++|++++ +++|+.|+.|++|++...... ..
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~-------~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~-----~~---- 520 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQG-------DLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKD-----GR---- 520 (793)
T ss_pred hhhhhhhcccceEEEEeeccc-------cccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccc-----cc----
Confidence 678889988765543321111 145689999999999776 999999999999998643100 00
Q ss_pred ceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCeEEEEeec
Q 041325 172 YYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSDFRCLESVKN 250 (450)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 250 (450)
.. . .....+ .+...+.+++|++ ++.+|++++.||.|++||+.+++.+..+.
T Consensus 521 ---~~-~----------------------~~~~~~-~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~- 572 (793)
T PLN00181 521 ---DI-H----------------------YPVVEL-ASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMK- 572 (793)
T ss_pred ---cc-c----------------------cceEEe-cccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEec-
Confidence 00 0 000011 2345789999987 57899999999999999999999888887
Q ss_pred ccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEc-CCCCEEEEeeCCCcEE
Q 041325 251 AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALS-TDGTVLYSGACDRSIL 329 (450)
Q Consensus 251 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~-~~~~~l~~g~~dg~i~ 329 (450)
.|...|.+++|+|.++.+|++|+.||.|++||++++. .+..+.. ...+.++.|+ +++.+|++|+.||.|+
T Consensus 573 ~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~--------~~~~~~~-~~~v~~v~~~~~~g~~latgs~dg~I~ 643 (793)
T PLN00181 573 EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGV--------SIGTIKT-KANICCVQFPSESGRSLAFGSADHKVY 643 (793)
T ss_pred CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCc--------EEEEEec-CCCeEEEEEeCCCCCEEEEEeCCCeEE
Confidence 8999999999997666699999999999999997665 3333433 3578999995 5799999999999999
Q ss_pred EEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe-CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCc
Q 041325 330 VWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV-SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRR 408 (450)
Q Consensus 330 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~ 408 (450)
+||+++.+. ....+.+|...|.++.|. +.+|++++.|+.|++||+..+.. .....++..+.+|..
T Consensus 644 iwD~~~~~~------------~~~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~--~~~~~~l~~~~gh~~ 709 (793)
T PLN00181 644 YYDLRNPKL------------PLCTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSIS--GINETPLHSFMGHTN 709 (793)
T ss_pred EEECCCCCc------------cceEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCcc--ccCCcceEEEcCCCC
Confidence 999986542 123556899999999997 56999999999999999975311 112356778899999
Q ss_pred ceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 409 PVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 409 ~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
.+..++|++++. +|++|+.||.|++|+.
T Consensus 710 ~i~~v~~s~~~~-------------~lasgs~D~~v~iw~~ 737 (793)
T PLN00181 710 VKNFVGLSVSDG-------------YIATGSETNEVFVYHK 737 (793)
T ss_pred CeeEEEEcCCCC-------------EEEEEeCCCEEEEEEC
Confidence 999999999998 9999999999999985
No 67
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-31 Score=221.33 Aligned_cols=274 Identities=21% Similarity=0.362 Sum_probs=220.0
Q ss_pred CccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCC
Q 041325 17 PKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSN 94 (450)
Q Consensus 17 ~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~d 94 (450)
+.|+|++..++++++..+.-.- ...+. ...++.+++. ||..+|..+.| |.++|++++.|
T Consensus 230 l~FS~nGkyLAsaSkD~Taiiw----------------~v~~d-~~~kl~~tlv--gh~~~V~yi~wSPDdryLlaCg~~ 290 (519)
T KOG0293|consen 230 LQFSHNGKYLASASKDSTAIIW----------------IVVYD-VHFKLKKTLV--GHSQPVSYIMWSPDDRYLLACGFD 290 (519)
T ss_pred EEEcCCCeeEeeccCCceEEEE----------------EEecC-cceeeeeeee--cccCceEEEEECCCCCeEEecCch
Confidence 4678888888887766654220 01111 1257889999 99999999999 89999999999
Q ss_pred CcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccc
Q 041325 95 GEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKY 172 (450)
Q Consensus 95 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~ 172 (450)
..+++||+.++...... -.+|...+.+++|.||+ +++|+.|+++..||++......
T Consensus 291 e~~~lwDv~tgd~~~~y-----------~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~----------- 348 (519)
T KOG0293|consen 291 EVLSLWDVDTGDLRHLY-----------PSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGN----------- 348 (519)
T ss_pred HheeeccCCcchhhhhc-----------ccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhc-----------
Confidence 99999999999866551 22456899999999998 9999999999999998763210
Q ss_pred eeeeeeccCCCcceeEeeecCceEEEeecceeeeec-CCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecc
Q 041325 173 YERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVH-HVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNA 251 (450)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 251 (450)
+.+ ....|.+++..+||+++++.+.|..|++++.++......+.
T Consensus 349 ---------------------------------W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lis-- 393 (519)
T KOG0293|consen 349 ---------------------------------WEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLIS-- 393 (519)
T ss_pred ---------------------------------ccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhcccc--
Confidence 111 12368999999999999999999999999999877665554
Q ss_pred cccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEE--EEcC-CCCEEEEeeCCCcE
Q 041325 252 HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL--ALST-DGTVLYSGACDRSI 328 (450)
Q Consensus 252 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l--~~~~-~~~~l~~g~~dg~i 328 (450)
...+|+++..+.+ +.++++.-.+..+++||++... .++.+.+|+..-.-+ +|-- +..++++|++|+.|
T Consensus 394 e~~~its~~iS~d-~k~~LvnL~~qei~LWDl~e~~--------lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kv 464 (519)
T KOG0293|consen 394 EEQPITSFSISKD-GKLALVNLQDQEIHLWDLEENK--------LVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKV 464 (519)
T ss_pred ccCceeEEEEcCC-CcEEEEEcccCeeEEeecchhh--------HHHHhhcccccceEEEeccCCCCcceEEecCCCceE
Confidence 5678999999974 3477888889999999997655 888888887653322 4433 55899999999999
Q ss_pred EEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC---eEEEEeCCCeEEEeeCCC
Q 041325 329 LVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN---LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 329 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~~~dg~v~iwd~~~ 388 (450)
+||+..+++++ ..+.+|...|+|++|+|. ++|+++.||+||||....
T Consensus 465 yIWhr~sgkll-------------~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 465 YIWHRISGKLL-------------AVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred EEEEccCCcee-------------EeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 99999999866 789999999999999964 999999999999998763
No 68
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-31 Score=215.17 Aligned_cols=330 Identities=20% Similarity=0.278 Sum_probs=244.2
Q ss_pred ceeeeEEeecCCCcceEEEEEe--CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-
Q 041325 63 HQCSATLKVKGNSSYIPSLAIA--GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK- 139 (450)
Q Consensus 63 ~~~~~~l~~~~h~~~v~~~~~d--~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~- 139 (450)
.++++.|. ||.+.|..++.+ ...+.+++.|.+.+||.++++.++.. +.||.+.|+++.|++.+
T Consensus 138 ~~lvre~~--GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~------------Y~GH~GSVNsikfh~s~~ 203 (481)
T KOG0300|consen 138 FRLVRELE--GHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLAT------------YTGHTGSVNSIKFHNSGL 203 (481)
T ss_pred Eeehhhhc--ccccceeeehhhcCCcceeecccccceeEEeeccccceee------------ecccccceeeEEeccccc
Confidence 45666677 999999999994 56888999999999999999998877 88999999999999766
Q ss_pred -EEEEeCCCeEEEEEcCCCceeEEe--ccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEE
Q 041325 140 -LFSAHQDHKIRVWKIDNNTSAYYS--TSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSAL 216 (450)
Q Consensus 140 -l~s~~~dg~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 216 (450)
+++++.|++-.||...-.-.+... ..+.......++.. ....+.-... .......+.+.+.+.+|...|.+.
T Consensus 204 L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sD--e~~~d~d~~~---~sD~~tiRvPl~~ltgH~~vV~a~ 278 (481)
T KOG0300|consen 204 LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSD--EHNRDTDSSE---KSDGHTIRVPLMRLTGHRAVVSAC 278 (481)
T ss_pred eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhccc--cccccccccc---ccCCceeeeeeeeeeccccceEeh
Confidence 889999999999984221100000 00000000000000 0000000000 001112345667888999999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchh
Q 041325 217 ALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSL 296 (450)
Q Consensus 217 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 296 (450)
.|-..|+.+++++.|.+..+||+++++.+..+. +|....+.++-+| ...++++.+.|-+.++||++.. ...
T Consensus 279 dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~Lt-GHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFRea-------I~s 349 (481)
T KOG0300|consen 279 DWLAGGQQMVTASWDRTANLWDVETGEVVNILT-GHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREA-------IQS 349 (481)
T ss_pred hhhcCcceeeeeeccccceeeeeccCceecccc-CcchhccccccCC-cceEEEEeccCceeEeccchhh-------cce
Confidence 999999999999999999999999999999998 9999999999998 4558999999999999999743 235
Q ss_pred hhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe-CC-eEEE
Q 041325 297 VQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV-SN-LLFS 374 (450)
Q Consensus 297 ~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~-~l~s 374 (450)
+..|++|...|+++.|..+ ..+++|+.|.+|+|||+++.+.. ... .....+++.++.+ +. .|+.
T Consensus 350 V~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsp------------lAT-IRtdS~~NRvavs~g~~iIAi 415 (481)
T KOG0300|consen 350 VAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSP------------LAT-IRTDSPANRVAVSKGHPIIAI 415 (481)
T ss_pred eeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCc------------cee-eecCCccceeEeecCCceEEe
Confidence 7789999999999999965 56899999999999999976422 111 1234566777776 33 6677
Q ss_pred EeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 375 GSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 375 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
--.+..|++||++.. .-..-+-..-++|..-|.|++|..+...+ -|+++|.|..+.=|++
T Consensus 416 PhDNRqvRlfDlnG~----RlaRlPrtsRqgHrRMV~c~AW~eehp~c-----------nLftcGFDR~v~gW~i 475 (481)
T KOG0300|consen 416 PHDNRQVRLFDLNGN----RLARLPRTSRQGHRRMVTCCAWLEEHPAC-----------NLFTCGFDRMVAGWKI 475 (481)
T ss_pred ccCCceEEEEecCCC----ccccCCcccccccceeeeeeeccccCccc-----------ccccccccceeeeeEe
Confidence 777788999999853 11112223457899999999999887632 5899999999999987
No 69
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-30 Score=209.16 Aligned_cols=276 Identities=20% Similarity=0.325 Sum_probs=213.2
Q ss_pred EEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEeccC
Q 041325 87 LLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSG 166 (450)
Q Consensus 87 ~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 166 (450)
.|++|+....|.-+++.-..............+.+.+..|.++|++++.++..+++|+.|-+|+|||+....
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssDetI~IYDm~k~~-------- 74 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSDETIHIYDMRKRK-------- 74 (362)
T ss_pred eEEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEecceeEeccCCCCcEEEEeccchh--------
Confidence 477888877777776654331000011112234456789999999999999999999999999999999872
Q ss_pred cccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCC--EEEEEeCCCcEEEEecCCCeE
Q 041325 167 KLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGS--LLYSTSWDRTFKIWRTSDFRC 244 (450)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~ 244 (450)
....+..|.+.|+++.|.+... .|++|+.||.|.+|+....++
T Consensus 75 -----------------------------------qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~ 119 (362)
T KOG0294|consen 75 -----------------------------------QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWEL 119 (362)
T ss_pred -----------------------------------hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEE
Confidence 2223446999999999998654 899999999999999999999
Q ss_pred EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC
Q 041325 245 LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC 324 (450)
Q Consensus 245 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~ 324 (450)
+..++ +|.+.|+.++++|.+. +.++.+.|+.+++||+-+++ ...... .....+.+.|+|.|.+++.+..
T Consensus 120 ~~slK-~H~~~Vt~lsiHPS~K-LALsVg~D~~lr~WNLV~Gr--------~a~v~~-L~~~at~v~w~~~Gd~F~v~~~ 188 (362)
T KOG0294|consen 120 LKSLK-AHKGQVTDLSIHPSGK-LALSVGGDQVLRTWNLVRGR--------VAFVLN-LKNKATLVSWSPQGDHFVVSGR 188 (362)
T ss_pred eeeec-ccccccceeEecCCCc-eEEEEcCCceeeeehhhcCc--------cceeec-cCCcceeeEEcCCCCEEEEEec
Confidence 99999 8999999999999554 88899999999999997776 111111 2233355999999999988876
Q ss_pred CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe-CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEe
Q 041325 325 DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV-SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVL 403 (450)
Q Consensus 325 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 403 (450)
++ |-+|.+.+.+.. ..+. ....+.|+.|. +..|++|..|+.|++||..+. .+...+
T Consensus 189 ~~-i~i~q~d~A~v~-------------~~i~-~~~r~l~~~~l~~~~L~vG~d~~~i~~~D~ds~--------~~~~~~ 245 (362)
T KOG0294|consen 189 NK-IDIYQLDNASVF-------------REIE-NPKRILCATFLDGSELLVGGDNEWISLKDTDSD--------TPLTEF 245 (362)
T ss_pred cE-EEEEecccHhHh-------------hhhh-ccccceeeeecCCceEEEecCCceEEEeccCCC--------ccceee
Confidence 54 889998875533 1111 22456777776 669999999999999998863 788889
Q ss_pred cCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 404 EGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 404 ~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
.+|...|.++.+-.+.. +.+|+|+|.||.|++||++
T Consensus 246 ~AH~~RVK~i~~~~~~~-----------~~~lvTaSSDG~I~vWd~~ 281 (362)
T KOG0294|consen 246 LAHENRVKDIASYTNPE-----------HEYLVTASSDGFIKVWDID 281 (362)
T ss_pred ecchhheeeeEEEecCC-----------ceEEEEeccCceEEEEEcc
Confidence 99999999998655432 2299999999999999984
No 70
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.2e-31 Score=217.14 Aligned_cols=256 Identities=20% Similarity=0.284 Sum_probs=206.4
Q ss_pred ceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceE
Q 041325 119 ANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYV 196 (450)
Q Consensus 119 ~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (450)
....+..|++.|.+++.+|+. ++||+.|..-.+|++.++.
T Consensus 56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge-------------------------------------- 97 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE-------------------------------------- 97 (399)
T ss_pred ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc--------------------------------------
Confidence 345578999999999999866 8999999999999999983
Q ss_pred EEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCC
Q 041325 197 QVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADT 276 (450)
Q Consensus 197 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 276 (450)
....+.+|.+.|+++.|+.+|.+||+|+.+|.|+||+..++.....+. .....+.=+.|+| ...+|++|+.||
T Consensus 98 -----~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~-~e~~dieWl~WHp-~a~illAG~~DG 170 (399)
T KOG0296|consen 98 -----FAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLD-QEVEDIEWLKWHP-RAHILLAGSTDG 170 (399)
T ss_pred -----ceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEee-cccCceEEEEecc-cccEEEeecCCC
Confidence 122344799999999999999999999999999999999998888876 5667788899999 555899999999
Q ss_pred cEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCcee------
Q 041325 277 KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMV------ 350 (450)
Q Consensus 277 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~------ 350 (450)
.+-+|.+.++. ..+.+.+|+.++++=.|.|+|+.++++..||+|++|++.+++++...........
T Consensus 171 svWmw~ip~~~--------~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~ 242 (399)
T KOG0296|consen 171 SVWMWQIPSQA--------LCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLN 242 (399)
T ss_pred cEEEEECCCcc--------eeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccc
Confidence 99999997644 6778889999999999999999999999999999999999988766552110000
Q ss_pred ------------------------eecc--------ccCCccceEEEEEe---CC--eEEEEeCCCeEEEeeCCCCcccc
Q 041325 351 ------------------------LKGA--------LRGHTKAILCLAVV---SN--LLFSGSSDNTIRIWRRSSSVTDH 393 (450)
Q Consensus 351 ------------------------~~~~--------~~~~~~~v~~~~~~---~~--~l~s~~~dg~v~iwd~~~~~~~~ 393 (450)
.... ...+...+.|+.+. .. +.|+|+.||+|.|||+..
T Consensus 243 ~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~----- 317 (399)
T KOG0296|consen 243 LAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAA----- 317 (399)
T ss_pred cccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEeccc-----
Confidence 0000 01222223333333 22 789999999999999986
Q ss_pred CCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 394 QKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 394 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
..++..-.|..+|+.+.|.+ .. +|++++.||.|+.||.|
T Consensus 318 ----~~~R~~c~he~~V~~l~w~~-t~-------------~l~t~c~~g~v~~wDaR 356 (399)
T KOG0296|consen 318 ----STLRHICEHEDGVTKLKWLN-TD-------------YLLTACANGKVRQWDAR 356 (399)
T ss_pred ----chhheeccCCCceEEEEEcC-cc-------------hheeeccCceEEeeecc
Confidence 34455556899999999999 55 89999999999999976
No 71
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=1.6e-32 Score=227.28 Aligned_cols=286 Identities=22% Similarity=0.297 Sum_probs=231.6
Q ss_pred eeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--
Q 041325 64 QCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 139 (450)
.....+. .|.+.|..+.| +...|++|+.|..|++|+....+.... ..+.|..++|+.+.|.+++
T Consensus 166 ~~~~~ld--~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~----------~tLaGs~g~it~~d~d~~~~~ 233 (459)
T KOG0288|consen 166 RALFVLD--AHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELI----------STLAGSLGNITSIDFDSDNKH 233 (459)
T ss_pred hhhhhhh--ccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhh----------hhhhccCCCcceeeecCCCce
Confidence 4555666 99999999999 569999999999999999987762221 1266888899999998665
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS 219 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (450)
+++++.|+.+++|+++.. ....++.+|.+.|+++.|.
T Consensus 234 ~iAas~d~~~r~Wnvd~~-------------------------------------------r~~~TLsGHtdkVt~ak~~ 270 (459)
T KOG0288|consen 234 VIAASNDKNLRLWNVDSL-------------------------------------------RLRHTLSGHTDKVTAAKFK 270 (459)
T ss_pred EEeecCCCceeeeeccch-------------------------------------------hhhhhhcccccceeeehhh
Confidence 999999999999999987 2233455899999999998
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhh
Q 041325 220 SDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQT 299 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 299 (450)
.....+++|+.|.+|++||+....|..++. ....+..|... ...+++|..|+.|++||.+... +...
T Consensus 271 ~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l--~~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~--------~~~s 337 (459)
T KOG0288|consen 271 LSHSRVVSGSADRTIKLWDLQKAYCSKTVL--PGSQCNDIVCS---ISDVISGHFDKKVRFWDIRSAD--------KTRS 337 (459)
T ss_pred ccccceeeccccchhhhhhhhhhheecccc--ccccccceEec---ceeeeecccccceEEEeccCCc--------eeeE
Confidence 877779999999999999999998888876 55677788775 3478999999999999998776 5555
Q ss_pred HhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeC
Q 041325 300 LEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSS 377 (450)
Q Consensus 300 ~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~ 377 (450)
...+ +.|+++..++++..|++++.|.++.+.|+++.+....+... ....+|. .+.+.|+| .|+++||.
T Consensus 338 v~~g-g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~-------g~k~asD--wtrvvfSpd~~YvaAGS~ 407 (459)
T KOG0288|consen 338 VPLG-GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAE-------GFKCASD--WTRVVFSPDGSYVAAGSA 407 (459)
T ss_pred eecC-cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeecc-------ccccccc--cceeEECCCCceeeeccC
Confidence 5544 58999999999999999999999999999987654221111 1122233 56666764 59999999
Q ss_pred CCeEEEeeCCCCccccCCCceeEEEecCCCc--ceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 378 DNTIRIWRRSSSVTDHQKGYSCLAVLEGHRR--PVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 378 dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
||.|+||++.++ ++...+..... .|++++|+|.|. .|++++.++.+.+|.
T Consensus 408 dgsv~iW~v~tg--------KlE~~l~~s~s~~aI~s~~W~~sG~-------------~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 408 DGSVYIWSVFTG--------KLEKVLSLSTSNAAITSLSWNPSGS-------------GLLSADKQKAVTLWT 459 (459)
T ss_pred CCcEEEEEccCc--------eEEEEeccCCCCcceEEEEEcCCCc-------------hhhcccCCcceEecC
Confidence 999999999985 66666655544 499999999999 899999999999994
No 72
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=100.00 E-value=2.1e-30 Score=216.09 Aligned_cols=279 Identities=20% Similarity=0.284 Sum_probs=234.5
Q ss_pred cceEEEEEe--CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEE
Q 041325 76 SYIPSLAIA--GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRV 151 (450)
Q Consensus 76 ~~v~~~~~d--~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~i 151 (450)
..|+++... ...++||+.|..+.++|...++.+.+ +.||...|+.+.++++. +++++.|-.|++
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~------------~~Gh~kki~~v~~~~~~~~v~~aSad~~i~v 287 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILAT------------LKGHTKKITSVKFHKDLDTVITASADEIIRV 287 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhhh------------ccCcceEEEEEEeccchhheeecCCcceEEe
Confidence 467777773 48999999999999999999988777 88999999999999887 999999999999
Q ss_pred EEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCC
Q 041325 152 WKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWD 231 (450)
Q Consensus 152 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 231 (450)
|....... ......|..+|+.+..+|.|+||++++.|
T Consensus 288 ws~~~~s~-------------------------------------------~~~~~~h~~~V~~ls~h~tgeYllsAs~d 324 (506)
T KOG0289|consen 288 WSVPLSSE-------------------------------------------PTSSRPHEEPVTGLSLHPTGEYLLSASND 324 (506)
T ss_pred eccccccC-------------------------------------------ccccccccccceeeeeccCCcEEEEecCC
Confidence 99876621 11233599999999999999999999999
Q ss_pred CcEEEEecCCCeEEEEeecc-cccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEE
Q 041325 232 RTFKIWRTSDFRCLESVKNA-HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310 (450)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l 310 (450)
++..+.|++++..+...... ..-.+++.+|+| ++.+|.+|..||.|++||+..+. .+..|.+|.++|..+
T Consensus 325 ~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp-DgLifgtgt~d~~vkiwdlks~~--------~~a~Fpght~~vk~i 395 (506)
T KOG0289|consen 325 GTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP-DGLIFGTGTPDGVVKIWDLKSQT--------NVAKFPGHTGPVKAI 395 (506)
T ss_pred ceEEEEEccCCcEEEEEeeccccceeEEeeEcC-CceEEeccCCCceEEEEEcCCcc--------ccccCCCCCCceeEE
Confidence 99999999999998887632 234689999998 44489999999999999997665 788899999999999
Q ss_pred EEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCC
Q 041325 311 ALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 311 ~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~ 388 (450)
+|+.+|.+|++++.|+.|++||++..+... ...+ .....+.++.|+ |.+|+.++.|=.|++++-.
T Consensus 396 ~FsENGY~Lat~add~~V~lwDLRKl~n~k-----------t~~l-~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~- 462 (506)
T KOG0289|consen 396 SFSENGYWLATAADDGSVKLWDLRKLKNFK-----------TIQL-DEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKK- 462 (506)
T ss_pred EeccCceEEEEEecCCeEEEEEehhhcccc-----------eeec-cccccceeEEEcCCCCeEEeecceeEEEEEecc-
Confidence 999999999999999999999999765331 1111 122367788887 7799999888666666644
Q ss_pred CccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 389 SVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 389 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
.+.|.++..+..|.+..+++.|....+ +++++|.|..++++.+
T Consensus 463 -----~k~W~~~~~~~~~sg~st~v~Fg~~aq-------------~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 463 -----TKSWTEIKELADHSGLSTGVRFGEHAQ-------------YLASTSMDAILRLYAL 505 (506)
T ss_pred -----cccceeeehhhhcccccceeeecccce-------------EEeeccchhheEEeec
Confidence 446889999999999999999999988 9999999999999875
No 73
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=5.2e-30 Score=224.97 Aligned_cols=275 Identities=30% Similarity=0.500 Sum_probs=220.6
Q ss_pred CcccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEE
Q 041325 11 CRRNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLL 88 (450)
Q Consensus 11 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l 88 (450)
..++..+.|+|+...+.....+..+.. +...+.+....+. +|...+.++.| ++++|
T Consensus 9 ~~~i~~~~~~~~~~~l~~~~~~g~i~i--------------------~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~l 66 (289)
T cd00200 9 TGGVTCVAFSPDGKLLATGSGDGTIKV--------------------WDLETGELLRTLK--GHTGPVRDVAASADGTYL 66 (289)
T ss_pred CCCEEEEEEcCCCCEEEEeecCcEEEE--------------------EEeeCCCcEEEEe--cCCcceeEEEECCCCCEE
Confidence 456778888888777766654444432 2222333556666 89999999999 67899
Q ss_pred EEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccC
Q 041325 89 YGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSG 166 (450)
Q Consensus 89 ~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~ 166 (450)
++++.||.|++|++.+++.... +..|...|.++.|+++. +++++.||.|++||+.+...
T Consensus 67 ~~~~~~~~i~i~~~~~~~~~~~------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~------- 127 (289)
T cd00200 67 ASGSSDKTIRLWDLETGECVRT------------LTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC------- 127 (289)
T ss_pred EEEcCCCeEEEEEcCcccceEE------------EeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE-------
Confidence 9999999999999988654443 56788899999999864 66666699999999986521
Q ss_pred cccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEE
Q 041325 167 KLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLE 246 (450)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 246 (450)
. ..+..|...+.+++|+|++.++++++.|+.|++||+++++.+.
T Consensus 128 ---------~---------------------------~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~ 171 (289)
T cd00200 128 ---------L---------------------------TTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVA 171 (289)
T ss_pred ---------E---------------------------EEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccce
Confidence 1 1222577789999999999999888889999999999888888
Q ss_pred EeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCC
Q 041325 247 SVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDR 326 (450)
Q Consensus 247 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg 326 (450)
.+. .+...+.++.|+|++ ..+++++.++.|++||++.++ ....+..|...+.+++|+|++.++++++.||
T Consensus 172 ~~~-~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~d~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 241 (289)
T cd00200 172 TLT-GHTGEVNSVAFSPDG-EKLLSSSSDGTIKLWDLSTGK--------CLGTLRGHENGVNSVAFSPDGYLLASGSEDG 241 (289)
T ss_pred eEe-cCccccceEEECCCc-CEEEEecCCCcEEEEECCCCc--------eecchhhcCCceEEEEEcCCCcEEEEEcCCC
Confidence 887 788899999999844 377888889999999997655 5566667888999999999988999888899
Q ss_pred cEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEEee
Q 041325 327 SILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRIWR 385 (450)
Q Consensus 327 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd 385 (450)
.|++||+.+++.. ..+..|...|.++.|++ +++++++.||.|++|+
T Consensus 242 ~i~i~~~~~~~~~-------------~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 242 TIRVWDLRTGECV-------------QTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEcCCceeE-------------EEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 9999999876644 44557888999999986 5999999999999996
No 74
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=100.00 E-value=2.1e-31 Score=223.57 Aligned_cols=270 Identities=23% Similarity=0.305 Sum_probs=217.6
Q ss_pred CCCcceEEEEE---eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---EEEEeCC
Q 041325 73 GNSSYIPSLAI---AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---LFSAHQD 146 (450)
Q Consensus 73 ~h~~~v~~~~~---d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~d 146 (450)
-|.+.|+.+.+ +...+|+++..+.|.|||..+..-..... ....+.+.+.+|...-.+|+|++.. |++++.|
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~--~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKAS--GECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCccccc--ccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 69999999999 78999999999999999987654332211 1345566789999888999998554 9999999
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLL 225 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l 225 (450)
++|++||+...... . . ...+...+.+|.+.|..++|++ +..+|
T Consensus 200 ~~i~lwdi~~~~~~---------~------~---------------------~~~p~~~~~~h~~~VeDV~~h~~h~~lF 243 (422)
T KOG0264|consen 200 HTICLWDINAESKE---------D------K---------------------VVDPKTIFSGHEDVVEDVAWHPLHEDLF 243 (422)
T ss_pred CcEEEEeccccccC---------C------c---------------------cccceEEeecCCcceehhhccccchhhh
Confidence 99999999876210 0 0 0123345668999999999999 67889
Q ss_pred EEEeCCCcEEEEecCC--CeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhc
Q 041325 226 YSTSWDRTFKIWRTSD--FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKH 303 (450)
Q Consensus 226 ~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 303 (450)
++++.|+.+.|||+++ .++..... +|...|+|++|+|.++.+||+|+.|++|++||+|+-. ..+..+.+|
T Consensus 244 ~sv~dd~~L~iwD~R~~~~~~~~~~~-ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~-------~~lh~~e~H 315 (422)
T KOG0264|consen 244 GSVGDDGKLMIWDTRSNTSKPSHSVK-AHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN-------KPLHTFEGH 315 (422)
T ss_pred eeecCCCeEEEEEcCCCCCCCccccc-ccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc-------cCceeccCC
Confidence 9999999999999994 44555555 8999999999999999899999999999999998755 278889999
Q ss_pred ccceEEEEEcCC-CCEEEEeeCCCcEEEEEcCCCceee-eCCCCCCceeeeccccCCccceEEEEEeCC---eEEEEeCC
Q 041325 304 KSAVTALALSTD-GTVLYSGACDRSILVWERDQGNYIV-DGDDDSGHMVLKGALRGHTKAILCLAVVSN---LLFSGSSD 378 (450)
Q Consensus 304 ~~~i~~l~~~~~-~~~l~~g~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~~~d 378 (450)
+..|..+.|+|+ ...|++++.|+.+.|||+..-.... ......+...+...-.||...|..++|+++ .|++.+.|
T Consensus 316 ~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeD 395 (422)
T KOG0264|consen 316 EDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAED 395 (422)
T ss_pred CcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCC
Confidence 999999999994 5688999999999999997422111 122334455566778899999999999976 89999999
Q ss_pred CeEEEeeCCC
Q 041325 379 NTIRIWRRSS 388 (450)
Q Consensus 379 g~v~iwd~~~ 388 (450)
+.+.||+...
T Consensus 396 N~LqIW~~s~ 405 (422)
T KOG0264|consen 396 NILQIWQMAE 405 (422)
T ss_pred ceEEEeeccc
Confidence 9999999874
No 75
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.8e-30 Score=219.75 Aligned_cols=273 Identities=22% Similarity=0.333 Sum_probs=221.7
Q ss_pred CCCcceEEEEEe---C-CEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCC
Q 041325 73 GNSSYIPSLAIA---G-KLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQD 146 (450)
Q Consensus 73 ~h~~~v~~~~~d---~-~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d 146 (450)
...+.|++++|+ . ++.+|+| -.|.|++..+...... +.-....|.++.|..|+ |++|+..
T Consensus 24 ke~~~vssl~fsp~~P~d~aVt~S--~rvqly~~~~~~~~k~------------~srFk~~v~s~~fR~DG~LlaaGD~s 89 (487)
T KOG0310|consen 24 KEHNSVSSLCFSPKHPYDFAVTSS--VRVQLYSSVTRSVRKT------------FSRFKDVVYSVDFRSDGRLLAAGDES 89 (487)
T ss_pred cccCcceeEecCCCCCCceEEecc--cEEEEEecchhhhhhh------------HHhhccceeEEEeecCCeEEEccCCc
Confidence 455789999994 3 4444554 4799999888776554 33445689999998666 8888889
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLL 225 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l 225 (450)
|.|+++|+.+. .....+.+|+.+|..+.|+| ++..+
T Consensus 90 G~V~vfD~k~r-------------------------------------------~iLR~~~ah~apv~~~~f~~~d~t~l 126 (487)
T KOG0310|consen 90 GHVKVFDMKSR-------------------------------------------VILRQLYAHQAPVHVTKFSPQDNTML 126 (487)
T ss_pred CcEEEeccccH-------------------------------------------HHHHHHhhccCceeEEEecccCCeEE
Confidence 99999996553 22334557999999999999 66778
Q ss_pred EEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhccc
Q 041325 226 YSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS 305 (450)
Q Consensus 226 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 305 (450)
++|++|+.+++||+.+...+..+. +|++.|.+.+|+|..+.++++|+.||.|++||++... ..+.++ .|..
T Consensus 127 ~s~sDd~v~k~~d~s~a~v~~~l~-~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~-------~~v~el-nhg~ 197 (487)
T KOG0310|consen 127 VSGSDDKVVKYWDLSTAYVQAELS-GHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLT-------SRVVEL-NHGC 197 (487)
T ss_pred EecCCCceEEEEEcCCcEEEEEec-CCcceeEeeccccCCCeEEEecCCCceEEEEEeccCC-------ceeEEe-cCCC
Confidence 889999999999999988755666 9999999999999888899999999999999997652 134444 4899
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEE
Q 041325 306 AVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRI 383 (450)
Q Consensus 306 ~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~i 383 (450)
+|.++.+-|.|..|++++ ...|+|||+.+|... ...+..|...|+|+.+.. ..|++|+-|+.|++
T Consensus 198 pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~ql------------l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKV 264 (487)
T KOG0310|consen 198 PVESVLALPSGSLIASAG-GNSVKVWDLTTGGQL------------LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKV 264 (487)
T ss_pred ceeeEEEcCCCCEEEEcC-CCeEEEEEecCCcee------------hhhhhcccceEEEEEeecCCceEeecccccceEE
Confidence 999999999999999887 467999999976543 244555999999999985 59999999999999
Q ss_pred eeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEE
Q 041325 384 WRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKI 446 (450)
Q Consensus 384 wd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~i 446 (450)
||+.+ ++.+..+. ..++|.+++.+|+++ .++.|..||.+.+
T Consensus 265 fd~t~--------~Kvv~s~~-~~~pvLsiavs~dd~-------------t~viGmsnGlv~~ 305 (487)
T KOG0310|consen 265 FDTTN--------YKVVHSWK-YPGPVLSIAVSPDDQ-------------TVVIGMSNGLVSI 305 (487)
T ss_pred EEccc--------eEEEEeee-cccceeeEEecCCCc-------------eEEEecccceeee
Confidence 99765 57777765 678999999999998 8999999998764
No 76
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.98 E-value=1.3e-28 Score=188.29 Aligned_cols=314 Identities=19% Similarity=0.216 Sum_probs=239.0
Q ss_pred CCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeee---cCCCCcceeEEecCCCceEE
Q 041325 58 PAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITS---TDVGDHANVVATGNGDAVKS 132 (450)
Q Consensus 58 ~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~---~~~~~~~~~~~~~h~~~v~~ 132 (450)
...+.++++.+|+ ....|++++| .|.+.+.|+...+.||.....-.-..... ...+...-..-..|.+.|.|
T Consensus 18 ~~k~~f~~i~~l~---dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc 94 (350)
T KOG0641|consen 18 KEKKHFEAINILE---DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYC 94 (350)
T ss_pred ccccceEEEEEec---chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEE
Confidence 3445567777775 7789999999 79999999999999988654322111111 11111111223478999999
Q ss_pred EEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCC
Q 041325 133 LVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHV 210 (450)
Q Consensus 133 l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (450)
.+|++.+ +++|+.|++|++..++..++ ..+- ....+.-|.
T Consensus 95 ~~ws~~geliatgsndk~ik~l~fn~dt~----------------~~~g----------------------~dle~nmhd 136 (350)
T KOG0641|consen 95 TAWSPCGELIATGSNDKTIKVLPFNADTC----------------NATG----------------------HDLEFNMHD 136 (350)
T ss_pred EEecCccCeEEecCCCceEEEEecccccc----------------cccC----------------------cceeeeecC
Confidence 9999887 99999999999998887632 1111 123445699
Q ss_pred CceEEEEEcc----CCCEEEEEe-CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc
Q 041325 211 DTVSALALSS----DGSLLYSTS-WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR 285 (450)
Q Consensus 211 ~~v~~~~~~~----~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 285 (450)
+.|..++|-. .+.+|++++ .|..|.+-|...++..+.+. +|.+.|.++--- ++-++++|+.|.+|++||++-
T Consensus 137 gtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s-ghtghilalysw--n~~m~~sgsqdktirfwdlrv 213 (350)
T KOG0641|consen 137 GTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS-GHTGHILALYSW--NGAMFASGSQDKTIRFWDLRV 213 (350)
T ss_pred CceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec-CCcccEEEEEEe--cCcEEEccCCCceEEEEeeec
Confidence 9999999965 355677665 57788888999999999988 899999887533 466899999999999999976
Q ss_pred hhhhccccchhhhhHhh---cccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccce
Q 041325 286 AALQVNKKHSLVQTLEK---HKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI 362 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~~---~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 362 (450)
..+... +-..+.+ ..+.|.+++..|.|++|++|..|....+||++.++.+ +.+..|...|
T Consensus 214 ~~~v~~----l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~i-------------q~f~phsadi 276 (350)
T KOG0641|consen 214 NSCVNT----LDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMI-------------QRFHPHSADI 276 (350)
T ss_pred cceeee----ccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCcee-------------eeeCCCccce
Confidence 552110 1111111 2367999999999999999999999999999998865 7888999999
Q ss_pred EEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEccc
Q 041325 363 LCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSL 440 (450)
Q Consensus 363 ~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~ 440 (450)
.|+.|++. ++++|+.|..|++-|++.... ..-.......|...+..+.|+|..- -+++.+.
T Consensus 277 r~vrfsp~a~yllt~syd~~ikltdlqgdla----~el~~~vv~ehkdk~i~~rwh~~d~-------------sfisssa 339 (350)
T KOG0641|consen 277 RCVRFSPGAHYLLTCSYDMKIKLTDLQGDLA----HELPIMVVAEHKDKAIQCRWHPQDF-------------SFISSSA 339 (350)
T ss_pred eEEEeCCCceEEEEecccceEEEeecccchh----hcCceEEEEeccCceEEEEecCccc-------------eeeeccC
Confidence 99999976 999999999999999985421 1234455667999999999999988 7999999
Q ss_pred CCcEEEEEe
Q 041325 441 DCEIKIWQI 449 (450)
Q Consensus 441 Dg~i~iw~l 449 (450)
|.++.+|-+
T Consensus 340 dkt~tlwa~ 348 (350)
T KOG0641|consen 340 DKTATLWAL 348 (350)
T ss_pred cceEEEecc
Confidence 999999975
No 77
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.98 E-value=2e-30 Score=240.01 Aligned_cols=312 Identities=20% Similarity=0.279 Sum_probs=229.4
Q ss_pred CCCcceEEEEE--eCCEEEEee--CCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCC
Q 041325 73 GNSSYIPSLAI--AGKLLYGGS--SNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQD 146 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs--~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d 146 (450)
.++..|.++.. ||..+|||+ .||.++||+.+.-..........-.........|.+.|+|+.|++|+ ||+|+.|
T Consensus 11 H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD 90 (942)
T KOG0973|consen 11 HNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDD 90 (942)
T ss_pred cCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCc
Confidence 44567899988 899999999 89999999876422111111111233445577899999999999888 9999999
Q ss_pred CeEEEEEcCCC--ceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCE
Q 041325 147 HKIRVWKIDNN--TSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSL 224 (450)
Q Consensus 147 g~i~iw~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 224 (450)
+.|.+|+.... ...+-...+... .-.......+.+|...|..++|+|++.+
T Consensus 91 ~~v~iW~~~~~~~~~~fgs~g~~~~---------------------------vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~ 143 (942)
T KOG0973|consen 91 RLVMIWERAEIGSGTVFGSTGGAKN---------------------------VESWKVVSILRGHDSDVLDVNWSPDDSL 143 (942)
T ss_pred ceEEEeeecccCCcccccccccccc---------------------------cceeeEEEEEecCCCccceeccCCCccE
Confidence 99999998741 000000000000 1122344566789999999999999999
Q ss_pred EEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcc
Q 041325 225 LYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHK 304 (450)
Q Consensus 225 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 304 (450)
|++++.|++|.|||..+++.+..+. +|.+.|..+.|.|.+. +|++-+.|++|++|++.+-... ........-....
T Consensus 144 lvS~s~DnsViiwn~~tF~~~~vl~-~H~s~VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~--k~It~pf~~~~~~ 219 (942)
T KOG0973|consen 144 LVSVSLDNSVIIWNAKTFELLKVLR-GHQSLVKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIE--KSITKPFEESPLT 219 (942)
T ss_pred EEEecccceEEEEccccceeeeeee-cccccccceEECCccC-eeeeecCCceEEEEEcccceee--EeeccchhhCCCc
Confidence 9999999999999999999888888 9999999999999554 9999999999999996442210 0000001111233
Q ss_pred cceEEEEEcCCCCEEEEeeC----CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC-------C---
Q 041325 305 SAVTALALSTDGTVLYSGAC----DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS-------N--- 370 (450)
Q Consensus 305 ~~i~~l~~~~~~~~l~~g~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~--- 370 (450)
.-+..+.|+|||++|++... -..+.|.+-.+-+ ....+.+|.+++.++.|++ +
T Consensus 220 T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk-------------~~~~LvGH~~p~evvrFnP~lfe~~~~ng~ 286 (942)
T KOG0973|consen 220 TFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWK-------------VDKDLVGHSAPVEVVRFNPKLFERNNKNGT 286 (942)
T ss_pred ceeeecccCCCcCeecchhhccCCcceeEEEecCCce-------------eeeeeecCCCceEEEEeChHHhccccccCC
Confidence 45789999999999998753 2356676654433 3467889999999999973 1
Q ss_pred ---------eEEEEeCCCeEEEeeCCCCccccCCCceeEEEe-cCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEccc
Q 041325 371 ---------LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVL-EGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSL 440 (450)
Q Consensus 371 ---------~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~ 440 (450)
.+|+|+.|++|.||..... +++... .-....|.+++|+|||. .|+.+|.
T Consensus 287 ~~~~~~~y~i~AvgSqDrSlSVW~T~~~--------RPl~vi~~lf~~SI~DmsWspdG~-------------~LfacS~ 345 (942)
T KOG0973|consen 287 STQPNCYYCIAAVGSQDRSLSVWNTALP--------RPLFVIHNLFNKSIVDMSWSPDGF-------------SLFACSL 345 (942)
T ss_pred ccCCCcceEEEEEecCCccEEEEecCCC--------CchhhhhhhhcCceeeeeEcCCCC-------------eEEEEec
Confidence 5789999999999998652 333222 33467899999999999 8999999
Q ss_pred CCcEEEEEe
Q 041325 441 DCEIKIWQI 449 (450)
Q Consensus 441 Dg~i~iw~l 449 (450)
||+|.+..+
T Consensus 346 DGtV~~i~F 354 (942)
T KOG0973|consen 346 DGTVALIHF 354 (942)
T ss_pred CCeEEEEEc
Confidence 999998876
No 78
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.8e-30 Score=226.13 Aligned_cols=264 Identities=23% Similarity=0.356 Sum_probs=218.7
Q ss_pred eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeE
Q 041325 84 AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAY 161 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~ 161 (450)
..+.||.|.. ..|++|+..++..... ...+...|+++.|++++ |++|..+|.|.|||..+..
T Consensus 187 s~n~laValg-~~vylW~~~s~~v~~l------------~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k--- 250 (484)
T KOG0305|consen 187 SANVLAVALG-QSVYLWSASSGSVTEL------------CSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQK--- 250 (484)
T ss_pred cCCeEEEEec-ceEEEEecCCCceEEe------------EecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcc---
Confidence 3567777764 6899999999886655 33347899999999766 9999999999999998772
Q ss_pred EeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeec-CCCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 041325 162 YSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVH-HVDTVSALALSSDGSLLYSTSWDRTFKIWRTS 240 (450)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 240 (450)
....+.+ |...|-+++|. +..+.+|+.|+.|..+|++
T Consensus 251 ----------------------------------------~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR 288 (484)
T KOG0305|consen 251 ----------------------------------------KTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVR 288 (484)
T ss_pred ----------------------------------------ccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEe
Confidence 2222334 88999999998 6789999999999999999
Q ss_pred CCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcC-CCCEE
Q 041325 241 DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST-DGTVL 319 (450)
Q Consensus 241 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l 319 (450)
..+.......+|...|..+.|+++ ..++++|+.|+.+.|||....+ +...+..|...|..++|+| ...+|
T Consensus 289 ~~~~~~~~~~~H~qeVCgLkws~d-~~~lASGgnDN~~~Iwd~~~~~--------p~~~~~~H~aAVKA~awcP~q~~lL 359 (484)
T KOG0305|consen 289 ISQHVVSTLQGHRQEVCGLKWSPD-GNQLASGGNDNVVFIWDGLSPE--------PKFTFTEHTAAVKALAWCPWQSGLL 359 (484)
T ss_pred cchhhhhhhhcccceeeeeEECCC-CCeeccCCCccceEeccCCCcc--------ccEEEeccceeeeEeeeCCCccCce
Confidence 887666633389999999999984 4499999999999999985544 7788889999999999999 56788
Q ss_pred EEee--CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCe--EEE--EeCCCeEEEeeCCCCcccc
Q 041325 320 YSGA--CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNL--LFS--GSSDNTIRIWRRSSSVTDH 393 (450)
Q Consensus 320 ~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~s--~~~dg~v~iwd~~~~~~~~ 393 (450)
|+|+ .|+.|++||..+++.+ ........|..+.|+..+ |++ |..++.|.||++.+
T Consensus 360 AsGGGs~D~~i~fwn~~~g~~i--------------~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps----- 420 (484)
T KOG0305|consen 360 ATGGGSADRCIKFWNTNTGARI--------------DSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPS----- 420 (484)
T ss_pred EEcCCCcccEEEEEEcCCCcEe--------------cccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccc-----
Confidence 8865 5999999999998765 223345789999999652 333 44577899999987
Q ss_pred CCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 394 QKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 394 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
.+.+..+.+|...|..++++||+. .+++|+.|.++++|++
T Consensus 421 ---~~~~~~l~gH~~RVl~la~SPdg~-------------~i~t~a~DETlrfw~~ 460 (484)
T KOG0305|consen 421 ---MKLVAELLGHTSRVLYLALSPDGE-------------TIVTGAADETLRFWNL 460 (484)
T ss_pred ---cceeeeecCCcceeEEEEECCCCC-------------EEEEecccCcEEeccc
Confidence 478899999999999999999999 9999999999999986
No 79
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.8e-29 Score=198.58 Aligned_cols=284 Identities=19% Similarity=0.309 Sum_probs=214.7
Q ss_pred eeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe--CCe
Q 041325 64 QCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL--GDK 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~ 139 (450)
++.+.|+ .-...|.++.| +|.+|++++.|.++++||..+++.+.. ...+.-.|..++|. +..
T Consensus 5 ~~ak~f~--~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~t------------i~skkyG~~~~~Fth~~~~ 70 (311)
T KOG1446|consen 5 RPAKVFR--ETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKT------------INSKKYGVDLACFTHHSNT 70 (311)
T ss_pred ccccccc--cCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeE------------eecccccccEEEEecCCce
Confidence 4445565 56788999999 799999999999999999999998877 33444566667775 344
Q ss_pred EEEEeC--CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEE
Q 041325 140 LFSAHQ--DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALA 217 (450)
Q Consensus 140 l~s~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 217 (450)
++.++. |.+||..++.+. +.+..++ +|...|++++
T Consensus 71 ~i~sStk~d~tIryLsl~dN----------------kylRYF~---------------------------GH~~~V~sL~ 107 (311)
T KOG1446|consen 71 VIHSSTKEDDTIRYLSLHDN----------------KYLRYFP---------------------------GHKKRVNSLS 107 (311)
T ss_pred EEEccCCCCCceEEEEeecC----------------ceEEEcC---------------------------CCCceEEEEE
Confidence 665555 889999999988 4444444 8999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhh
Q 041325 218 LSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLV 297 (450)
Q Consensus 218 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 297 (450)
.+|-++.+++++.|++|++||++..++...+. ...-..+++.| .+-++|++...+.|++||++.-.. ......
T Consensus 108 ~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~---~~~~pi~AfDp-~GLifA~~~~~~~IkLyD~Rs~dk---gPF~tf 180 (311)
T KOG1446|consen 108 VSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLN---LSGRPIAAFDP-EGLIFALANGSELIKLYDLRSFDK---GPFTTF 180 (311)
T ss_pred ecCCCCeEEecccCCeEEeeEecCCCCceEEe---cCCCcceeECC-CCcEEEEecCCCeEEEEEecccCC---CCceeE
Confidence 99988999999999999999999888887775 23335567887 333677777777999999987531 111111
Q ss_pred hhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccce---EEEEEe--CCeE
Q 041325 298 QTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI---LCLAVV--SNLL 372 (450)
Q Consensus 298 ~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v---~~~~~~--~~~l 372 (450)
..........+.|.|+|||++|+.++..+.+++.|.-+|.... .+..+...- ....|. ++++
T Consensus 181 ~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~-------------tfs~~~~~~~~~~~a~ftPds~Fv 247 (311)
T KOG1446|consen 181 SITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKS-------------TFSGYPNAGNLPLSATFTPDSKFV 247 (311)
T ss_pred ccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEee-------------eEeeccCCCCcceeEEECCCCcEE
Confidence 1111456788999999999999999999999999999887552 222222111 344454 5699
Q ss_pred EEEeCCCeEEEeeCCCCccccCCCceeEEEecC-CCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEE
Q 041325 373 FSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG-HRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIW 447 (450)
Q Consensus 373 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw 447 (450)
++|+.||+|.+|+++++ ..+..+.+ +.+++.++.|.|... +++|++ ..+-+|
T Consensus 248 l~gs~dg~i~vw~~~tg--------~~v~~~~~~~~~~~~~~~fnP~~~-------------mf~sa~--s~l~fw 300 (311)
T KOG1446|consen 248 LSGSDDGTIHVWNLETG--------KKVAVLRGPNGGPVSCVRFNPRYA-------------MFVSAS--SNLVFW 300 (311)
T ss_pred EEecCCCcEEEEEcCCC--------cEeeEecCCCCCCccccccCCcee-------------eeeecC--ceEEEE
Confidence 99999999999999986 66777777 799999999999866 666664 456666
No 80
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.97 E-value=8.5e-30 Score=224.36 Aligned_cols=361 Identities=21% Similarity=0.262 Sum_probs=252.4
Q ss_pred CCCCccceeeeEEeecCCCcceEEEEE-----eCCEEEEeeCCCcEEEecCCCCCcee----eee---------------
Q 041325 57 APAASEHQCSATLKVKGNSSYIPSLAI-----AGKLLYGGSSNGEIRAWNRDPNNYVN----ITS--------------- 112 (450)
Q Consensus 57 ~~~~~~~~~~~~l~~~~h~~~v~~~~~-----d~~~l~tgs~dg~v~vw~~~~~~~~~----~~~--------------- 112 (450)
.++....+..+...+.||.++|.+++| +.-+||++|.|..||||.+.-+.... ...
T Consensus 173 ~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~ 252 (764)
T KOG1063|consen 173 LYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEE 252 (764)
T ss_pred EeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeee
Confidence 333334445555555599999999999 35689999999999999875333111 000
Q ss_pred cCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEe--ccCcccccceeeeeeccCCCcceeE
Q 041325 113 TDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYS--TSGKLKNKYYERIATLPTLNDRFTK 188 (450)
Q Consensus 113 ~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (450)
......-...+.||.+.|.++.|.|.. |++++.|.++.+|.-++....... ..+.......-....+-..+....+
T Consensus 253 i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii 332 (764)
T KOG1063|consen 253 IQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVII 332 (764)
T ss_pred EEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEE
Confidence 000000112356999999999999888 999999999999998877443221 1122111111111111111222233
Q ss_pred eeecCceEEEee-------cceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCe----EEEEeecccccceE
Q 041325 189 CFLANNYVQVRR-------HKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFR----CLESVKNAHDDAIN 257 (450)
Q Consensus 189 ~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~v~ 257 (450)
+....+...+++ .......+|.+.|.+++|+|.|.+|++.+.|.+-|++-.-..+ .+..-+ .|...++
T Consensus 333 ~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQ-iHGyDl~ 411 (764)
T KOG1063|consen 333 AHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQ-IHGYDLT 411 (764)
T ss_pred EecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccc-cccccce
Confidence 333333444444 2233467899999999999999999999999999998654211 222222 5788899
Q ss_pred EEEEeecCCcEEEEEcCCCcEEEEeCcchhhh------------------------------------------------
Q 041325 258 AIVVSKSNDGFVYTGSADTKIKVWKKLRAALQ------------------------------------------------ 289 (450)
Q Consensus 258 ~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~------------------------------------------------ 289 (450)
|+++.+. +..+++|...+.+|+|+....-..
T Consensus 412 c~~~vn~-~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~e 490 (764)
T KOG1063|consen 412 CLSFVNE-DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAE 490 (764)
T ss_pred eeehccC-CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeee
Confidence 9999863 657899999999999975432110
Q ss_pred --------------------ccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC-----CcEEEEEcCCCceeeeCCC
Q 041325 290 --------------------VNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD-----RSILVWERDQGNYIVDGDD 344 (450)
Q Consensus 290 --------------------~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d-----g~i~vwd~~~~~~~~~~~~ 344 (450)
...-++.++++.+|...|.+++.+|+++++++++.. ..|++|+..+-..
T Consensus 491 t~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~------ 564 (764)
T KOG1063|consen 491 TPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQ------ 564 (764)
T ss_pred cccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhh------
Confidence 001123455667899999999999999999999864 3589999886543
Q ss_pred CCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCC
Q 041325 345 DSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYS 422 (450)
Q Consensus 345 ~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 422 (450)
...+.+|.-.|+.++|+++ +|++.+.|+++.+|........ .......+.|+.-|.+..|+|++.
T Consensus 565 -------~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~----e~~fa~~k~HtRIIWdcsW~pde~-- 631 (764)
T KOG1063|consen 565 -------VQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKD----EFRFACLKAHTRIIWDCSWSPDEK-- 631 (764)
T ss_pred -------hheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccch----hhhhccccccceEEEEcccCcccc--
Confidence 3578999999999999955 9999999999999998654222 122444788999999999999999
Q ss_pred CCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 423 NRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 423 ~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+++|+|.|.+|++|.+
T Consensus 632 -----------~FaTaSRDK~VkVW~~ 647 (764)
T KOG1063|consen 632 -----------YFATASRDKKVKVWEE 647 (764)
T ss_pred -----------eeEEecCCceEEEEec
Confidence 8999999999999975
No 81
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=8.8e-30 Score=202.82 Aligned_cols=263 Identities=20% Similarity=0.285 Sum_probs=207.4
Q ss_pred CCcceEEEEE---eCCEEEEeeCCCcEEEecCCCC-CceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCC
Q 041325 74 NSSYIPSLAI---AGKLLYGGSSNGEIRAWNRDPN-NYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDH 147 (450)
Q Consensus 74 h~~~v~~~~~---d~~~l~tgs~dg~v~vw~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg 147 (450)
-.+.|.+|+| ...++++||.||+||+|+++.. ..... ....|.++|.+++|+.++ +++|+.|+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~k-----------a~~~~~~PvL~v~WsddgskVf~g~~Dk 94 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPK-----------AQQSHDGPVLDVCWSDDGSKVFSGGCDK 94 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccch-----------hhhccCCCeEEEEEccCCceEEeeccCC
Confidence 3578999999 4778889999999999999873 32221 245789999999999777 99999999
Q ss_pred eEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCC--EE
Q 041325 148 KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGS--LL 225 (450)
Q Consensus 148 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l 225 (450)
.+++||+.+++. ..+..|.++|.++.|-+... .|
T Consensus 95 ~~k~wDL~S~Q~--------------------------------------------~~v~~Hd~pvkt~~wv~~~~~~cl 130 (347)
T KOG0647|consen 95 QAKLWDLASGQV--------------------------------------------SQVAAHDAPVKTCHWVPGMNYQCL 130 (347)
T ss_pred ceEEEEccCCCe--------------------------------------------eeeeecccceeEEEEecCCCccee
Confidence 999999999843 12335999999999987554 89
Q ss_pred EEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhccc
Q 041325 226 YSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS 305 (450)
Q Consensus 226 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 305 (450)
++|+.|.+|+.||.+...++..+. ..+.+.++..- ..+++++..+..|.+|+++++..+. .......+-
T Consensus 131 ~TGSWDKTlKfWD~R~~~pv~t~~--LPeRvYa~Dv~---~pm~vVata~r~i~vynL~n~~te~------k~~~SpLk~ 199 (347)
T KOG0647|consen 131 VTGSWDKTLKFWDTRSSNPVATLQ--LPERVYAADVL---YPMAVVATAERHIAVYNLENPPTEF------KRIESPLKW 199 (347)
T ss_pred EecccccceeecccCCCCeeeeee--ccceeeehhcc---CceeEEEecCCcEEEEEcCCCcchh------hhhcCcccc
Confidence 999999999999999999999886 67788888775 3488999999999999997765211 111112345
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC---------ccceEEEEEeCC--eEEE
Q 041325 306 AVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH---------TKAILCLAVVSN--LLFS 374 (450)
Q Consensus 306 ~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~v~~~~~~~~--~l~s 374 (450)
.++|++..+|.+..+.|+-+|.+.|..+..+... ....++.| -..|.+++|++. .|+|
T Consensus 200 Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~-----------~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvT 268 (347)
T KOG0647|consen 200 QTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPK-----------DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVT 268 (347)
T ss_pred eeeEEEEEecCCceEeeeecceEEEEecCCCCcc-----------CceeEEEeccCCCCCCceEEecceEeecccceEEE
Confidence 6899999998888899999999999998875321 11122222 246788999975 8999
Q ss_pred EeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCC
Q 041325 375 GSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDY 421 (450)
Q Consensus 375 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 421 (450)
++.||+..+||-.. ...+...+.|..+|++..|+.+|..
T Consensus 269 aGsDGtf~FWDkda--------r~kLk~s~~~~qpItcc~fn~~G~i 307 (347)
T KOG0647|consen 269 AGSDGTFSFWDKDA--------RTKLKTSETHPQPITCCSFNRNGSI 307 (347)
T ss_pred ecCCceEEEecchh--------hhhhhccCcCCCccceeEecCCCCE
Confidence 99999999999775 2556677789999999999999993
No 82
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.97 E-value=1.1e-29 Score=213.31 Aligned_cols=293 Identities=22% Similarity=0.322 Sum_probs=229.3
Q ss_pred eeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCce-eeeecC-----CCCcceeEEecCCCceEEEEEeC
Q 041325 66 SATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYV-NITSTD-----VGDHANVVATGNGDAVKSLVVLG 137 (450)
Q Consensus 66 ~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~-~~~~~~-----~~~~~~~~~~~h~~~v~~l~~~~ 137 (450)
.+.+. .|.-+|+||++ |+.+.++++.||+|.=|++.+++.. ...... ........-.+|...+.+++.++
T Consensus 135 ~~~~~--~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~ 212 (479)
T KOG0299|consen 135 FRVIG--KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSS 212 (479)
T ss_pred ceeec--cccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcC
Confidence 44555 89999999999 7999999999999999999988744 121111 00000000138999999999998
Q ss_pred Ce--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEE
Q 041325 138 DK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSA 215 (450)
Q Consensus 138 ~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 215 (450)
|+ |++|+.|..|.||+.++.+ ....+.+|.+.|.+
T Consensus 213 Dgkylatgg~d~~v~Iw~~~t~e-------------------------------------------hv~~~~ghr~~V~~ 249 (479)
T KOG0299|consen 213 DGKYLATGGRDRHVQIWDCDTLE-------------------------------------------HVKVFKGHRGAVSS 249 (479)
T ss_pred CCcEEEecCCCceEEEecCcccc-------------------------------------------hhhcccccccceee
Confidence 87 9999999999999999882 22234589999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccch
Q 041325 216 LALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHS 295 (450)
Q Consensus 216 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 295 (450)
++|-.....+++++.|+.|++|+++....+.++. +|.+.|..|.... ....+-+|+.|.++++|++...
T Consensus 250 L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetly-GHqd~v~~IdaL~-reR~vtVGgrDrT~rlwKi~ee--------- 318 (479)
T KOG0299|consen 250 LAFRKGTSELYSASADRSVKVWSIDQLSYVETLY-GHQDGVLGIDALS-RERCVTVGGRDRTVRLWKIPEE--------- 318 (479)
T ss_pred eeeecCccceeeeecCCceEEEehhHhHHHHHHh-CCccceeeechhc-ccceEEeccccceeEEEecccc---------
Confidence 9999988889999999999999999988888887 8999999998874 3335666669999999998433
Q ss_pred hhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEE
Q 041325 296 LVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLF 373 (450)
Q Consensus 296 ~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~ 373 (450)
....+.++.+.+-|++|- +...+++|+.||.|.+|++...++++......+..... ....++.+|++++.. .++++
T Consensus 319 sqlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~-~~~~~~~Witsla~i~~sdL~a 396 (479)
T KOG0299|consen 319 SQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPEL-DPVNGNFWITSLAVIPGSDLLA 396 (479)
T ss_pred ceeeeeCCCCCeeeEEEe-cccceeeccCCceEEEeeecccCceeEeeccccccCCc-cccccccceeeeEecccCceEE
Confidence 234556778899999998 45789999999999999999999886554443322211 112334689999887 45999
Q ss_pred EEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCC
Q 041325 374 SGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDY 421 (450)
Q Consensus 374 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 421 (450)
+|+.+|.|++|.+..+ .....++..+. -.+-|++|+|+++++.
T Consensus 397 sGS~~G~vrLW~i~~g----~r~i~~l~~ls-~~GfVNsl~f~~sgk~ 439 (479)
T KOG0299|consen 397 SGSWSGCVRLWKIEDG----LRAINLLYSLS-LVGFVNSLAFSNSGKR 439 (479)
T ss_pred ecCCCCceEEEEecCC----ccccceeeecc-cccEEEEEEEccCCCE
Confidence 9999999999999986 44566677766 6788999999999983
No 83
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=3.3e-29 Score=217.18 Aligned_cols=324 Identities=15% Similarity=0.259 Sum_probs=237.3
Q ss_pred eeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---
Q 041325 65 CSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--- 139 (450)
Q Consensus 65 ~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--- 139 (450)
+-..++ ||.+.|+|++. .|.+|++|+.||+||||.+.++.++..... .+.|.|++|+|..
T Consensus 392 ~~lvyr--GHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~-------------d~~I~~vaw~P~~~~~ 456 (733)
T KOG0650|consen 392 CALVYR--GHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQF-------------DSEIRSVAWNPLSDLC 456 (733)
T ss_pred eeeeEe--ccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEee-------------cceeEEEEecCCCCce
Confidence 444455 99999999999 599999999999999999999999887333 2489999999766
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcc--eeEeeecCceEEEeecceeeeecCCCceEEEE
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDR--FTKCFLANNYVQVRRHKKCTWVHHVDTVSALA 217 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 217 (450)
+++++....+.+-+-.-+........ .+.+...+..... ..+.+......+ .....+....|...|..+.
T Consensus 457 vLAvA~~~~~~ivnp~~G~~~e~~~t-------~ell~~~~~~~~p~~~~~~W~~~~~~e-~~~~v~~~I~~~k~i~~vt 528 (733)
T KOG0650|consen 457 VLAVAVGECVLIVNPIFGDRLEVGPT-------KELLASAPNESEPDAAVVTWSRASLDE-LEKGVCIVIKHPKSIRQVT 528 (733)
T ss_pred eEEEEecCceEEeCccccchhhhcch-------hhhhhcCCCccCCcccceeechhhhhh-hccceEEEEecCCccceee
Confidence 55555555577766544421111000 0111111111110 111111110000 1112445567999999999
Q ss_pred EccCCCEEEEEeC---CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccc
Q 041325 218 LSSDGSLLYSTSW---DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKH 294 (450)
Q Consensus 218 ~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 294 (450)
|+..|+||++..- ...|.|+++...+....|. ...+.|.++.|+|... +|++++. ..|++||+....
T Consensus 529 WHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~-kskG~vq~v~FHPs~p-~lfVaTq-~~vRiYdL~kqe------- 598 (733)
T KOG0650|consen 529 WHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFR-KSKGLVQRVKFHPSKP-YLFVATQ-RSVRIYDLSKQE------- 598 (733)
T ss_pred eecCCceEEEeccCCCcceEEEEecccccccCchh-hcCCceeEEEecCCCc-eEEEEec-cceEEEehhHHH-------
Confidence 9999999999765 3568899998887777776 5678899999999665 5666655 579999997655
Q ss_pred hhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eE
Q 041325 295 SLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LL 372 (450)
Q Consensus 295 ~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l 372 (450)
+++.+......|..++.+|.|..|+.|+.|+.+..||+.-+.. +...+..|...+++++|++. ++
T Consensus 599 -lvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlssk------------Pyk~lr~H~~avr~Va~H~ryPLf 665 (733)
T KOG0650|consen 599 -LVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSK------------PYKTLRLHEKAVRSVAFHKRYPLF 665 (733)
T ss_pred -HHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcc------------hhHHhhhhhhhhhhhhhcccccee
Confidence 7888887888999999999999999999999999999985432 33678889999999999977 89
Q ss_pred EEEeCCCeEEEeeCCCC-ccccCCCceeEEEecCCCcc----eEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEE
Q 041325 373 FSGSSDNTIRIWRRSSS-VTDHQKGYSCLAVLEGHRRP----VKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIW 447 (450)
Q Consensus 373 ~s~~~dg~v~iwd~~~~-~~~~~~~~~~~~~~~~h~~~----v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw 447 (450)
++|+.||++.|+.-.-- ....+.-..++..+.+|... |..+.|+|... +|++++.||+|++|
T Consensus 666 as~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qp-------------WLfsAGAd~tirlf 732 (733)
T KOG0650|consen 666 ASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQP-------------WLFSAGADGTIRLF 732 (733)
T ss_pred eeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCc-------------eEEecCCCceEEee
Confidence 99999999998842210 00112235678889999876 99999999999 99999999999999
No 84
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=4.6e-30 Score=215.62 Aligned_cols=263 Identities=15% Similarity=0.257 Sum_probs=213.7
Q ss_pred EecCCCceEEEEEeCCe---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEe
Q 041325 123 ATGNGDAVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVR 199 (450)
Q Consensus 123 ~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (450)
...|.+.|+.+.+.|.. +++.+..+.|.|||............ .
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~---------------------------------~ 166 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG---------------------------------E 166 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc---------------------------------c
Confidence 45789999999998766 77788899999999987632110000 1
Q ss_pred ecceeeeecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCeE-------EEEeecccccceEEEEEeecCCcEEEE
Q 041325 200 RHKKCTWVHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSDFRC-------LESVKNAHDDAINAIVVSKSNDGFVYT 271 (450)
Q Consensus 200 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l~~ 271 (450)
-.+...+.+|.+.-.+++|++ ..-.|++++.|+.|++||+..... ...+. .|...|..++|++....++++
T Consensus 167 ~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~-~h~~~VeDV~~h~~h~~lF~s 245 (422)
T KOG0264|consen 167 CRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFS-GHEDVVEDVAWHPLHEDLFGS 245 (422)
T ss_pred CCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEee-cCCcceehhhccccchhhhee
Confidence 123446678988888899999 445789999999999999975432 23334 899999999999999989999
Q ss_pred EcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcC-CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCcee
Q 041325 272 GSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST-DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMV 350 (450)
Q Consensus 272 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 350 (450)
++.|+.+.|||+|++. .++.....+|.+.|.|++|+| ++..||+|+.|++|.+||+++.+.
T Consensus 246 v~dd~~L~iwD~R~~~------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~------------ 307 (422)
T KOG0264|consen 246 VGDDGKLMIWDTRSNT------SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNK------------ 307 (422)
T ss_pred ecCCCeEEEEEcCCCC------CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhccc------------
Confidence 9999999999998521 125667788999999999999 677899999999999999997643
Q ss_pred eeccccCCccceEEEEEeCC---eEEEEeCCCeEEEeeCCCCccc------cCCCceeEEEecCCCcceEEEEEEecCCC
Q 041325 351 LKGALRGHTKAILCLAVVSN---LLFSGSSDNTIRIWRRSSSVTD------HQKGYSCLAVLEGHRRPVKCLTAVVDSDY 421 (450)
Q Consensus 351 ~~~~~~~~~~~v~~~~~~~~---~l~s~~~dg~v~iwd~~~~~~~------~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 421 (450)
....+.+|...|.++.|+++ .|++++.|+.+.+||+..-... ...+.+++..-.||...|..+.|+|+...
T Consensus 308 ~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW 387 (422)
T KOG0264|consen 308 PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPW 387 (422)
T ss_pred CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCe
Confidence 44788999999999999975 8999999999999999754322 13455677888999999999999999986
Q ss_pred CCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 422 SNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 422 ~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
.|+|.++|+.+.||++
T Consensus 388 ------------~I~SvaeDN~LqIW~~ 403 (422)
T KOG0264|consen 388 ------------TIASVAEDNILQIWQM 403 (422)
T ss_pred ------------EEEEecCCceEEEeec
Confidence 8999999999999986
No 85
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=6.3e-30 Score=217.79 Aligned_cols=305 Identities=14% Similarity=0.258 Sum_probs=220.1
Q ss_pred EEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEE
Q 041325 68 TLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSA 143 (450)
Q Consensus 68 ~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~ 143 (450)
-+++.+|+..|.++++ .|-+|++|+.|.+|++||+............ ........|.+++|++.+ |++.
T Consensus 160 Ei~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~-------l~P~E~h~i~sl~ys~Tg~~iLvv 232 (641)
T KOG0772|consen 160 EIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQ-------LQPCETHQINSLQYSVTGDQILVV 232 (641)
T ss_pred eEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhc-------cCcccccccceeeecCCCCeEEEE
Confidence 3444499999999999 5999999999999999999876533221000 011233489999999655 7777
Q ss_pred eCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CC
Q 041325 144 HQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DG 222 (450)
Q Consensus 144 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 222 (450)
+..-..+++|-+..+...+....+ ++ .....-.+|...++|.+|+| +.
T Consensus 233 sg~aqakl~DRdG~~~~e~~KGDQ---------------------------YI----~Dm~nTKGHia~lt~g~whP~~k 281 (641)
T KOG0772|consen 233 SGSAQAKLLDRDGFEIVEFSKGDQ---------------------------YI----RDMYNTKGHIAELTCGCWHPDNK 281 (641)
T ss_pred ecCcceeEEccCCceeeeeeccch---------------------------hh----hhhhccCCceeeeeccccccCcc
Confidence 777889999987764332222211 10 11112347999999999999 55
Q ss_pred CEEEEEeCCCcEEEEecCCCeEE-EEee----cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhh
Q 041325 223 SLLYSTSWDRTFKIWRTSDFRCL-ESVK----NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLV 297 (450)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~~~~~-~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 297 (450)
..+++++.||+++|||++..+.. ..+. .+..-+++.++|++++. .|++|+.||.|.+|+...... ....
T Consensus 282 ~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~-~iAagc~DGSIQ~W~~~~~~v-----~p~~ 355 (641)
T KOG0772|consen 282 EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGK-LIAAGCLDGSIQIWDKGSRTV-----RPVM 355 (641)
T ss_pred cceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcc-hhhhcccCCceeeeecCCccc-----ccce
Confidence 67999999999999999875432 2232 13345789999999555 799999999999999754321 1122
Q ss_pred hhHhhccc--ceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEE
Q 041325 298 QTLEKHKS--AVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLF 373 (450)
Q Consensus 298 ~~~~~~~~--~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~ 373 (450)
..-.+|.. .|+||.|++||++|++-+.|+++++||++..+..+. ...-.....+-+.++|+++ +|+
T Consensus 356 ~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~----------~~tgL~t~~~~tdc~FSPd~kli~ 425 (641)
T KOG0772|consen 356 KVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLN----------VRTGLPTPFPGTDCCFSPDDKLIL 425 (641)
T ss_pred EeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchh----------hhcCCCccCCCCccccCCCceEEE
Confidence 33345666 899999999999999999999999999997653210 0111112233466777765 777
Q ss_pred EEeC------CCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEE
Q 041325 374 SGSS------DNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIW 447 (450)
Q Consensus 374 s~~~------dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw 447 (450)
+|.. .|.+.+||..+ +..+..+.-....|..+.|+|.-+ .|+.|+.||.+++|
T Consensus 426 TGtS~~~~~~~g~L~f~d~~t--------~d~v~ki~i~~aSvv~~~WhpkLN-------------Qi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 426 TGTSAPNGMTAGTLFFFDRMT--------LDTVYKIDISTASVVRCLWHPKLN-------------QIFAGSGDGTAHVY 484 (641)
T ss_pred ecccccCCCCCceEEEEeccc--------eeeEEEecCCCceEEEEeecchhh-------------heeeecCCCceEEE
Confidence 7763 57899999876 577787877788999999999988 89999999999986
No 86
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=1.7e-28 Score=224.92 Aligned_cols=288 Identities=13% Similarity=0.206 Sum_probs=197.5
Q ss_pred CCCCccceeeeEEeecCCCcceEEEEEeCCEEEE------eeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCce
Q 041325 57 APAASEHQCSATLKVKGNSSYIPSLAIAGKLLYG------GSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAV 130 (450)
Q Consensus 57 ~~~~~~~~~~~~l~~~~h~~~v~~~~~d~~~l~t------gs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 130 (450)
.+..+...+..-+++....-.-..++.+++++|. |+.+|.|++|+........ .+.+|.+.|
T Consensus 10 ~~~~~~~~~y~diri~~~~~~s~~ia~n~~~~A~~w~~~gGG~~gvI~L~~~~r~~~v~------------~L~gH~~~V 77 (568)
T PTZ00420 10 LYPDPSNNLFDDLRICSRVIDSCGIACSSGFVAVPWEVEGGGLIGAIRLENQMRKPPVI------------KLKGHTSSI 77 (568)
T ss_pred cCCchhhCeeccEEccccccCceeEeeCCCeEEEEEEcCCCCceeEEEeeecCCCceEE------------EEcCCCCCE
Confidence 3333444444444432222222334445555553 5668889999876654333 377999999
Q ss_pred EEEEEeCC---eEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeee
Q 041325 131 KSLVVLGD---KLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWV 207 (450)
Q Consensus 131 ~~l~~~~~---~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (450)
.+++|+|+ .|++|+.||+|++||+.+.... ...+ ......+.
T Consensus 78 ~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~---------------~~~i--------------------~~p~~~L~ 122 (568)
T PTZ00420 78 LDLQFNPCFSEILASGSEDLTIRVWEIPHNDES---------------VKEI--------------------KDPQCILK 122 (568)
T ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc---------------cccc--------------------ccceEEee
Confidence 99999975 3999999999999999864210 0000 01122345
Q ss_pred cCCCceEEEEEccCCCE-EEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcch
Q 041325 208 HHVDTVSALALSSDGSL-LYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 286 (450)
+|...|.+++|+|++.. +++++.|+.|++||+++++.+..+. +...|.+++|+|++. +|++++.|+.|++||++++
T Consensus 123 gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~--~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg 199 (568)
T PTZ00420 123 GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQIN--MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQ 199 (568)
T ss_pred cCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEe--cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCC
Confidence 79999999999998875 5788999999999999998777765 567899999998544 8888999999999999877
Q ss_pred hhhccccchhhhhHhhcccceEE-----EEEcCCCCEEEEeeCCC----cEEEEEcCC-CceeeeCCCCCCceeeecccc
Q 041325 287 ALQVNKKHSLVQTLEKHKSAVTA-----LALSTDGTVLYSGACDR----SILVWERDQ-GNYIVDGDDDSGHMVLKGALR 356 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~-----l~~~~~~~~l~~g~~dg----~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~ 356 (450)
+ .+..+.+|.+.+.. ..|++++++|++++.|+ .|++||++. .+++ ....+.
T Consensus 200 ~--------~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl-----------~~~~ld 260 (568)
T PTZ00420 200 E--------IASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSAL-----------VTMSID 260 (568)
T ss_pred c--------EEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCce-----------EEEEec
Confidence 6 55566777765433 34568889999987764 799999995 3322 111222
Q ss_pred CCccceEEEEEe---CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCC
Q 041325 357 GHTKAILCLAVV---SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDY 421 (450)
Q Consensus 357 ~~~~~v~~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 421 (450)
.+.+.+.. .|+ +.++++|+.|+.|++|++..+ ....+..+. +..++.+++|.|....
T Consensus 261 ~~~~~L~p-~~D~~tg~l~lsGkGD~tIr~~e~~~~------~~~~l~~~~-s~~p~~g~~f~Pkr~~ 320 (568)
T PTZ00420 261 NASAPLIP-HYDESTGLIYLIGKGDGNCRYYQHSLG------SIRKVNEYK-SCSPFRSFGFLPKQIC 320 (568)
T ss_pred CCccceEE-eeeCCCCCEEEEEECCCeEEEEEccCC------cEEeecccc-cCCCccceEEcccccc
Confidence 33333222 233 448899999999999999764 122333333 6678889999998663
No 87
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.1e-30 Score=223.75 Aligned_cols=251 Identities=25% Similarity=0.342 Sum_probs=212.4
Q ss_pred CCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEec-CCCceEEEEE
Q 041325 59 AASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATG-NGDAVKSLVV 135 (450)
Q Consensus 59 ~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~ 135 (450)
...+++...... -+...|+++.| +|.+||+|..+|.|.|||....+.... +.+ |...|-+++|
T Consensus 203 ~~~s~~v~~l~~--~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~------------~~~~h~~rvg~laW 268 (484)
T KOG0305|consen 203 SASSGSVTELCS--FGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRT------------LRGSHASRVGSLAW 268 (484)
T ss_pred ecCCCceEEeEe--cCCCceEEEEECCCCCEEEEeecCCeEEEEehhhcccccc------------ccCCcCceeEEEec
Confidence 444444444444 34899999999 799999999999999999988775555 445 9999999999
Q ss_pred eCCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEE
Q 041325 136 LGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSA 215 (450)
Q Consensus 136 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 215 (450)
....+.+|+.|+.|..+|++..+.. ...+.+|...|..
T Consensus 269 ~~~~lssGsr~~~I~~~dvR~~~~~------------------------------------------~~~~~~H~qeVCg 306 (484)
T KOG0305|consen 269 NSSVLSSGSRDGKILNHDVRISQHV------------------------------------------VSTLQGHRQEVCG 306 (484)
T ss_pred cCceEEEecCCCcEEEEEEecchhh------------------------------------------hhhhhcccceeee
Confidence 9888999999999999999887320 0024579999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEc--CCCcEEEEeCcchhhhcccc
Q 041325 216 LALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGS--ADTKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 216 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~ 293 (450)
++|++|+.++|+|+.|+.+.|||....++...+. .|...|.+++|+|...++||+|+ .|+.|++||..++.
T Consensus 307 Lkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~-~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~------ 379 (484)
T KOG0305|consen 307 LKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFT-EHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGA------ 379 (484)
T ss_pred eEECCCCCeeccCCCccceEeccCCCccccEEEe-ccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCc------
Confidence 9999999999999999999999998888888887 89999999999999999999875 59999999998776
Q ss_pred chhhhhHhhcccceEEEEEcCCCCEEEEe--eCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-
Q 041325 294 HSLVQTLEKHKSAVTALALSTDGTVLYSG--ACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN- 370 (450)
Q Consensus 294 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~g--~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 370 (450)
.+.... ..+.|++|.|++..+-|+++ ..++.|.||+..+.+.+ ..+.+|...|..++++++
T Consensus 380 --~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~-------------~~l~gH~~RVl~la~SPdg 443 (484)
T KOG0305|consen 380 --RIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLV-------------AELLGHTSRVLYLALSPDG 443 (484)
T ss_pred --Eecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccccee-------------eeecCCcceeEEEEECCCC
Confidence 555544 56899999999988777764 45778999999986644 789999999999999865
Q ss_pred -eEEEEeCCCeEEEeeCCC
Q 041325 371 -LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 371 -~l~s~~~dg~v~iwd~~~ 388 (450)
.+++|+.|.++++|++-.
T Consensus 444 ~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 444 ETIVTGAADETLRFWNLFD 462 (484)
T ss_pred CEEEEecccCcEEeccccC
Confidence 999999999999999875
No 88
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=1.6e-28 Score=224.16 Aligned_cols=277 Identities=16% Similarity=0.205 Sum_probs=198.0
Q ss_pred eEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeec-CCCCcceeEEecCCCceEEEEEeC-Ce--EEEEeCCCeEEEEE
Q 041325 78 IPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITST-DVGDHANVVATGNGDAVKSLVVLG-DK--LFSAHQDHKIRVWK 153 (450)
Q Consensus 78 v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~-~~~~~~~~~~~~h~~~v~~l~~~~-~~--l~s~~~dg~i~iw~ 153 (450)
+...++|+..+++++.+.....|+...+..+..... .........+.+|.+.|.+++|+| +. |++|+.|++|++||
T Consensus 25 ~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWd 104 (493)
T PTZ00421 25 PSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWG 104 (493)
T ss_pred cccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEe
Confidence 445556878888888888888998766543222111 111112235789999999999997 43 99999999999999
Q ss_pred cCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCC-CEEEEEeCCC
Q 041325 154 IDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDG-SLLYSTSWDR 232 (450)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg 232 (450)
+....... . .......+.+|...|.+++|+|++ ++|++++.|+
T Consensus 105 i~~~~~~~----------------~--------------------~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 105 IPEEGLTQ----------------N--------------------ISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred cCCCcccc----------------c--------------------cCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 97652100 0 001223455799999999999975 7999999999
Q ss_pred cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccc-eEEEE
Q 041325 233 TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSA-VTALA 311 (450)
Q Consensus 233 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-i~~l~ 311 (450)
.|+|||+++++.+..+. .|...|.+++|+|+ ..+|++++.|+.|++||+++++ .+..+..|.+. ...+.
T Consensus 149 tVrIWDl~tg~~~~~l~-~h~~~V~sla~spd-G~lLatgs~Dg~IrIwD~rsg~--------~v~tl~~H~~~~~~~~~ 218 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIK-CHSDQITSLEWNLD-GSLLCTTSKDKKLNIIDPRDGT--------IVSSVEAHASAKSQRCL 218 (493)
T ss_pred EEEEEECCCCeEEEEEc-CCCCceEEEEEECC-CCEEEEecCCCEEEEEECCCCc--------EEEEEecCCCCcceEEE
Confidence 99999999999888887 78899999999985 4589999999999999998766 45556667654 45678
Q ss_pred EcCCCCEEEEee----CCCcEEEEEcCCCceeeeCCCCCCceeeeccccC-CccceEEEEEe--CCeEEEEe-CCCeEEE
Q 041325 312 LSTDGTVLYSGA----CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG-HTKAILCLAVV--SNLLFSGS-SDNTIRI 383 (450)
Q Consensus 312 ~~~~~~~l~~g~----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~--~~~l~s~~-~dg~v~i 383 (450)
|.+++..+++++ .|+.|++||+++..... ..... +...+....|+ +++|++++ .|+.|++
T Consensus 219 w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~------------~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iri 286 (493)
T PTZ00421 219 WAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY------------STVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRC 286 (493)
T ss_pred EcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce------------eEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEE
Confidence 888887777654 47899999998653211 11111 22334444555 45777776 5999999
Q ss_pred eeCCCCccccCCCceeEEEe-cCCCcceEEEEEEecCC
Q 041325 384 WRRSSSVTDHQKGYSCLAVL-EGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 384 wd~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~~ 420 (450)
||+.++ ...... ..+..++..++|.|...
T Consensus 287 wdl~~~--------~~~~~~~~~s~~~~~g~~~~pk~~ 316 (493)
T PTZ00421 287 FELMNE--------RLTFCSSYSSVEPHKGLCMMPKWS 316 (493)
T ss_pred EEeeCC--------ceEEEeeccCCCCCcceEeccccc
Confidence 999874 233322 22456788888888755
No 89
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=9.3e-31 Score=228.81 Aligned_cols=277 Identities=21% Similarity=0.386 Sum_probs=219.0
Q ss_pred eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeE
Q 041325 84 AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAY 161 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~ 161 (450)
++++|+||+.||.|++|+.....-... ......+..|.+.|+.+....++ |++++.|-+|++|+......
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s------~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~-- 107 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNEPS------TPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNT-- 107 (735)
T ss_pred CCceEEecCCCceEEEeccccccCCcc------cchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcc--
Confidence 578999999999999999865432111 11234477899999999987655 99999999999999987621
Q ss_pred EeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEE-ccCCCEEEEEeCCCcEEEEecC
Q 041325 162 YSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALAL-SSDGSLLYSTSWDRTFKIWRTS 240 (450)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~ 240 (450)
-|+ ..+..|.+.|.|+++ -++..++|+|+.|+.|.+||++
T Consensus 108 ------------~c~---------------------------stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin 148 (735)
T KOG0308|consen 108 ------------FCM---------------------------STIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDIN 148 (735)
T ss_pred ------------hhH---------------------------hhhhcccchheeeeecccCceeEEecCCCccEEEEEcc
Confidence 111 233469999999999 7789999999999999999999
Q ss_pred CCe--EEEEe--------ecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEE
Q 041325 241 DFR--CLESV--------KNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310 (450)
Q Consensus 241 ~~~--~~~~~--------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l 310 (450)
++. .+..+ ..++..+|++++.++.+ ..+++|+..+.+++||.++.+ .+..+.+|...|..+
T Consensus 149 ~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~-t~ivsGgtek~lr~wDprt~~--------kimkLrGHTdNVr~l 219 (735)
T KOG0308|consen 149 TGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTG-TIIVSGGTEKDLRLWDPRTCK--------KIMKLRGHTDNVRVL 219 (735)
T ss_pred CcchhhhhhccccccccCCCCCccceeeeecCCcc-eEEEecCcccceEEecccccc--------ceeeeeccccceEEE
Confidence 772 22222 23678899999998743 479999999999999998877 677788999999999
Q ss_pred EEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCC
Q 041325 311 ALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 311 ~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~ 388 (450)
..++||+.+++++.||+|++||+...+++ ..+..|...|+++..+++ .+.+|+.||.|..-|+++
T Consensus 220 l~~dDGt~~ls~sSDgtIrlWdLgqQrCl-------------~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 220 LVNDDGTRLLSASSDGTIRLWDLGQQRCL-------------ATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred EEcCCCCeEeecCCCceEEeeecccccee-------------eeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence 99999999999999999999999988876 568889999999998876 899999999999999987
Q ss_pred CccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 389 SVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 389 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
. .++.. +-....+|..+..+...+ -+-++..|+.|+-|.++
T Consensus 287 ~-------~~~tl-ick~daPv~~l~~~~~~~-------------~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 287 P-------AKSTL-ICKEDAPVLKLHLHEHDN-------------SVWVTTTDSSIKRWKLE 327 (735)
T ss_pred c-------hhheE-eecCCCchhhhhhccccC-------------CceeeeccccceecCCc
Confidence 3 12222 222445677777665554 34667778888888653
No 90
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=2e-28 Score=224.51 Aligned_cols=203 Identities=14% Similarity=0.199 Sum_probs=154.0
Q ss_pred eeecCCCceEEEEEccC-CCEEEEEeCCCcEEEEecCCCe--------EEEEeecccccceEEEEEeecCCcEEEEEcCC
Q 041325 205 TWVHHVDTVSALALSSD-GSLLYSTSWDRTFKIWRTSDFR--------CLESVKNAHDDAINAIVVSKSNDGFVYTGSAD 275 (450)
Q Consensus 205 ~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 275 (450)
.+.+|.+.|.+++|+|+ +++|++|+.|+.|++||+.++. ++..+. +|...|.+++|+|....++++++.|
T Consensus 69 ~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~-gH~~~V~sVaf~P~g~~iLaSgS~D 147 (568)
T PTZ00420 69 KLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILK-GHKKKISIIDWNPMNYYIMCSSGFD 147 (568)
T ss_pred EEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEee-cCCCcEEEEEECCCCCeEEEEEeCC
Confidence 44579999999999996 7899999999999999997642 233444 7889999999999776677899999
Q ss_pred CcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccc
Q 041325 276 TKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGAL 355 (450)
Q Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 355 (450)
+.|++||+++++ ....+. +...|.+++|+|+|++|++++.|+.|+|||+++++.+ ..+
T Consensus 148 gtIrIWDl~tg~--------~~~~i~-~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i-------------~tl 205 (568)
T PTZ00420 148 SFVNIWDIENEK--------RAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIA-------------SSF 205 (568)
T ss_pred CeEEEEECCCCc--------EEEEEe-cCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEE-------------EEE
Confidence 999999998765 222333 4578999999999999999999999999999988754 456
Q ss_pred cCCccceEEEE-----Ee--CCeEEEEeCCC----eEEEeeCCCCccccCCCceeEE--EecCCCcceEEEEEEecCCCC
Q 041325 356 RGHTKAILCLA-----VV--SNLLFSGSSDN----TIRIWRRSSSVTDHQKGYSCLA--VLEGHRRPVKCLTAVVDSDYS 422 (450)
Q Consensus 356 ~~~~~~v~~~~-----~~--~~~l~s~~~dg----~v~iwd~~~~~~~~~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~ 422 (450)
.+|.+.+.+.. |+ +++|++++.|+ .|+|||++.. ..++. .+..+.+.+......+++.
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~-------~~pl~~~~ld~~~~~L~p~~D~~tg~-- 276 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT-------TSALVTMSIDNASAPLIPHYDESTGL-- 276 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC-------CCceEEEEecCCccceEEeeeCCCCC--
Confidence 67776553322 22 45888887774 7999999852 12333 3333444443333344455
Q ss_pred CCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 423 NRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 423 ~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
++++|+.|+.|++|++.
T Consensus 277 -----------l~lsGkGD~tIr~~e~~ 293 (568)
T PTZ00420 277 -----------IYLIGKGDGNCRYYQHS 293 (568)
T ss_pred -----------EEEEEECCCeEEEEEcc
Confidence 89999999999999973
No 91
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.8e-30 Score=201.24 Aligned_cols=253 Identities=17% Similarity=0.319 Sum_probs=213.8
Q ss_pred cCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEE
Q 041325 55 KQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKS 132 (450)
Q Consensus 55 ~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 132 (450)
.....-.++.-+-+|. ||.+.|..... |....|+++.|-+-+|||.-++..+.. ..|.--|.+
T Consensus 41 pmlr~g~tgdwigtfe--ghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhs-------------f~hkhivk~ 105 (334)
T KOG0278|consen 41 PMLRNGDTGDWIGTFE--GHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHS-------------FEHKHIVKA 105 (334)
T ss_pred chhccCCCCCcEEeee--ccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhh-------------hhhhheeee
Confidence 3344556777888999 99999999999 567788999999999999988876554 367778999
Q ss_pred EEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCC
Q 041325 133 LVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHV 210 (450)
Q Consensus 133 l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (450)
++|+.|. |++|+.++.+|++|++..+ .+...+.+|+
T Consensus 106 ~af~~ds~~lltgg~ekllrvfdln~p~------------------------------------------App~E~~ght 143 (334)
T KOG0278|consen 106 VAFSQDSNYLLTGGQEKLLRVFDLNRPK------------------------------------------APPKEISGHT 143 (334)
T ss_pred EEecccchhhhccchHHHhhhhhccCCC------------------------------------------CCchhhcCCC
Confidence 9999776 9999999999999998773 2334556899
Q ss_pred CceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc
Q 041325 211 DTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 290 (450)
+.|..+.|....+.+++...|++||+||.++++.++.+. .+.+|+++.+++ ++.+++....+.|.+||..+-.
T Consensus 144 g~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~--~~s~VtSlEvs~--dG~ilTia~gssV~Fwdaksf~--- 216 (334)
T KOG0278|consen 144 GGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE--FNSPVTSLEVSQ--DGRILTIAYGSSVKFWDAKSFG--- 216 (334)
T ss_pred CcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe--cCCCCcceeecc--CCCEEEEecCceeEEecccccc---
Confidence 999999999988889999999999999999999999997 778999999995 5566777777899999986544
Q ss_pred cccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN 370 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 370 (450)
+++.++ ....|.+...+|+...+++|++|..++.||..+++.+. .-.++|.++|.|+.|+|+
T Consensus 217 -----~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~------------~~nkgh~gpVhcVrFSPd 278 (334)
T KOG0278|consen 217 -----LLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIG------------SYNKGHFGPVHCVRFSPD 278 (334)
T ss_pred -----ceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceee------------ecccCCCCceEEEEECCC
Confidence 555554 45678899999999999999999999999999998662 124899999999999965
Q ss_pred --eEEEEeCCCeEEEeeCCCC
Q 041325 371 --LLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 371 --~l~s~~~dg~v~iwd~~~~ 389 (450)
..++||.||+|++|....+
T Consensus 279 GE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 279 GELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred CceeeccCCCceEEEEEecCC
Confidence 8999999999999998764
No 92
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.97 E-value=1e-28 Score=196.16 Aligned_cols=303 Identities=20% Similarity=0.306 Sum_probs=221.3
Q ss_pred CCCcceEEEEE---eCCEEEEeeCCCcEEEecCCCCCceee---eecCCCCcceeEEecCCCceEEEEEeCCe---EEEE
Q 041325 73 GNSSYIPSLAI---AGKLLYGGSSNGEIRAWNRDPNNYVNI---TSTDVGDHANVVATGNGDAVKSLVVLGDK---LFSA 143 (450)
Q Consensus 73 ~h~~~v~~~~~---d~~~l~tgs~dg~v~vw~~~~~~~~~~---~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~ 143 (450)
-|.+.|.++.. .|+++++|+.||.|.|||++....... .....-......-.+|.-.|..+.|.|-. +.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 79999999999 499999999999999999976441110 00000000111134788899999998643 8889
Q ss_pred eCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc---
Q 041325 144 HQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS--- 220 (450)
Q Consensus 144 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--- 220 (450)
+.|.++++||..+.+.. ..+. ..+.|.+-+++|
T Consensus 121 SFDhtlKVWDtnTlQ~a----------------~~F~----------------------------me~~VYshamSp~a~ 156 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEA----------------VDFK----------------------------MEGKVYSHAMSPMAM 156 (397)
T ss_pred cccceEEEeecccceee----------------EEee----------------------------cCceeehhhcChhhh
Confidence 99999999999987432 1111 334566667776
Q ss_pred CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchh-h------hcccc
Q 041325 221 DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAA-L------QVNKK 293 (450)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~------~~~~~ 293 (450)
...++++|..|-.|++.|+.+|.+.+.+. +|.+.|.++.|+|..+-.|++|+.||.|++||++... + .....
T Consensus 157 sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls-GHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~ 235 (397)
T KOG4283|consen 157 SHCLIAAGTRDVQVRLCDIASGSFSHTLS-GHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKR 235 (397)
T ss_pred cceEEEEecCCCcEEEEeccCCcceeeec-cccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCcc
Confidence 24578888899999999999999999999 9999999999999888789999999999999998751 1 11122
Q ss_pred chhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEE-EEeCCeE
Q 041325 294 HSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL-AVVSNLL 372 (450)
Q Consensus 294 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~l 372 (450)
.+.++.-..|.+.+..++|+.++.++++++.|..+++|+..+|+.......+ .......|. .+. + ..+.+.+
T Consensus 236 ~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~-----~~~n~~~~~-~~~-~~~~~s~vf 308 (397)
T KOG4283|consen 236 PPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGP-----IIHNQTTSF-AVH-IQSMDSDVF 308 (397)
T ss_pred CccccccccccceeeeeeecccchhhhhccCccceEEeecccCccccccccc-----ccccccccc-eEE-EeecccceE
Confidence 3334445678899999999999999999999999999999988643211000 000000010 111 1 1112333
Q ss_pred EEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 373 FSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 373 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
+---.++.+.++++-++ ..+..+..|-..|.+..+-|+-+ .+.+|+.|+.|..|-
T Consensus 309 v~~p~~~~lall~~~sg--------s~ir~l~~h~k~i~c~~~~~~fq-------------~~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 309 VLFPNDGSLALLNLLEG--------SFVRRLSTHLKRINCAAYRPDFE-------------QCFTGDMNGNIYMWS 363 (397)
T ss_pred EEEecCCeEEEEEccCc--------eEEEeeecccceeeEEeecCchh-------------hhhccccCCcccccc
Confidence 33445688999998875 78888999999999999999988 899999999999884
No 93
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=2.1e-28 Score=223.49 Aligned_cols=251 Identities=16% Similarity=0.251 Sum_probs=183.7
Q ss_pred CceEEEEEeC--CeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceee
Q 041325 128 DAVKSLVVLG--DKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCT 205 (450)
Q Consensus 128 ~~v~~l~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (450)
..|.....++ ..+++++.+.....|+...+......... . .. ......
T Consensus 21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~----------------G-------------~~-~~~~~~ 70 (493)
T PTZ00421 21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDY----------------G-------------KL-ASNPPI 70 (493)
T ss_pred eccccccccCCCCCcEeECCceEEEEEecCCceEEeecccc----------------c-------------cC-CCCCce
Confidence 3444444443 44888888888899987665211100000 0 00 001123
Q ss_pred eecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCe-------EEEEeecccccceEEEEEeecCCcEEEEEcCCCc
Q 041325 206 WVHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSDFR-------CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTK 277 (450)
Q Consensus 206 ~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 277 (450)
+.+|.+.|.+++|+| ++++|++|+.|++|++||+.++. .+..+. +|...|.+++|+|...++|++++.|+.
T Consensus 71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~-gH~~~V~~l~f~P~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQ-GHTKKVGIVSFHPSAMNVLASAGADMV 149 (493)
T ss_pred EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEec-CCCCcEEEEEeCcCCCCEEEEEeCCCE
Confidence 568999999999999 88999999999999999997652 455565 799999999999976679999999999
Q ss_pred EEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccC
Q 041325 278 IKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG 357 (450)
Q Consensus 278 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (450)
|++||+++++ ....+..|...|.+++|+|+|++|++++.|+.|++||+++++.+ ..+.+
T Consensus 150 VrIWDl~tg~--------~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v-------------~tl~~ 208 (493)
T PTZ00421 150 VNVWDVERGK--------AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIV-------------SSVEA 208 (493)
T ss_pred EEEEECCCCe--------EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEE-------------EEEec
Confidence 9999997765 55667788999999999999999999999999999999988755 34556
Q ss_pred Cccce-EEEEEeC--CeEEEEe----CCCeEEEeeCCCCccccCCCceeEEEecCC-CcceEEEEEEecCCCCCCCCCCC
Q 041325 358 HTKAI-LCLAVVS--NLLFSGS----SDNTIRIWRRSSSVTDHQKGYSCLAVLEGH-RRPVKCLTAVVDSDYSNRNSDHS 429 (450)
Q Consensus 358 ~~~~v-~~~~~~~--~~l~s~~----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~~~~~~~~ 429 (450)
|...+ ..+.|.+ +.+++++ .|+.|++||+++.. .++.....+ ...+....|++++.
T Consensus 209 H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~-------~p~~~~~~d~~~~~~~~~~d~d~~--------- 272 (493)
T PTZ00421 209 HASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA-------SPYSTVDLDQSSALFIPFFDEDTN--------- 272 (493)
T ss_pred CCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC-------CceeEeccCCCCceEEEEEcCCCC---------
Confidence 66543 3455653 4666544 47999999998631 233333323 34556667888888
Q ss_pred CceEEEEEcc-cCCcEEEEEeC
Q 041325 430 STSFLVYSGS-LDCEIKIWQIR 450 (450)
Q Consensus 430 ~~~~~l~s~~-~Dg~i~iw~l~ 450 (450)
+|++++ .|+.|++||++
T Consensus 273 ----~L~lggkgDg~Iriwdl~ 290 (493)
T PTZ00421 273 ----LLYIGSKGEGNIRCFELM 290 (493)
T ss_pred ----EEEEEEeCCCeEEEEEee
Confidence 788877 59999999984
No 94
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=1.8e-28 Score=196.15 Aligned_cols=268 Identities=17% Similarity=0.233 Sum_probs=209.8
Q ss_pred CcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEE
Q 041325 75 SSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRV 151 (450)
Q Consensus 75 ~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~i 151 (450)
...|++|.| .+..|+.++.||++++|+........ ...|..++.+++|.++. +++|+.||.|+.
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~-------------~~~~~~plL~c~F~d~~~~~~G~~dg~vr~ 79 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL-------------KFKHGAPLLDCAFADESTIVTGGLDGQVRR 79 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh-------------heecCCceeeeeccCCceEEEeccCceEEE
Confidence 578999999 46777778899999999998774332 24688899999999876 999999999999
Q ss_pred EEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCC
Q 041325 152 WKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWD 231 (450)
Q Consensus 152 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 231 (450)
+|+.++.. ..+..|..+|.|+.+++....+++|++|
T Consensus 80 ~Dln~~~~--------------------------------------------~~igth~~~i~ci~~~~~~~~vIsgsWD 115 (323)
T KOG1036|consen 80 YDLNTGNE--------------------------------------------DQIGTHDEGIRCIEYSYEVGCVISGSWD 115 (323)
T ss_pred EEecCCcc--------------------------------------------eeeccCCCceEEEEeeccCCeEEEcccC
Confidence 99998832 1233589999999999988889999999
Q ss_pred CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEE
Q 041325 232 RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALA 311 (450)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 311 (450)
++|++||.+.......+. ....|.++... ++.|++|+.+..|.+||+++.... ....-...+-.+.+++
T Consensus 116 ~~ik~wD~R~~~~~~~~d--~~kkVy~~~v~---g~~LvVg~~~r~v~iyDLRn~~~~------~q~reS~lkyqtR~v~ 184 (323)
T KOG1036|consen 116 KTIKFWDPRNKVVVGTFD--QGKKVYCMDVS---GNRLVVGTSDRKVLIYDLRNLDEP------FQRRESSLKYQTRCVA 184 (323)
T ss_pred ccEEEEeccccccccccc--cCceEEEEecc---CCEEEEeecCceEEEEEcccccch------hhhccccceeEEEEEE
Confidence 999999999865655554 44589998886 458999999999999999876521 1112223456789999
Q ss_pred EcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCc---------cceEEEEEeCC--eEEEEeCCCe
Q 041325 312 LSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT---------KAILCLAVVSN--LLFSGSSDNT 380 (450)
Q Consensus 312 ~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~--~l~s~~~dg~ 380 (450)
+.|++.-.++++-||.|.+=.++..+.. ......++.|. .+|.+|+|++- .++||+.||.
T Consensus 185 ~~pn~eGy~~sSieGRVavE~~d~s~~~---------~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~ 255 (323)
T KOG1036|consen 185 LVPNGEGYVVSSIEGRVAVEYFDDSEEA---------QSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGI 255 (323)
T ss_pred EecCCCceEEEeecceEEEEccCCchHH---------hhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCce
Confidence 9999888999999999988666654111 01112233332 57899999965 8999999999
Q ss_pred EEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEccc
Q 041325 381 IRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSL 440 (450)
Q Consensus 381 v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~ 440 (450)
|.+||..+. +.+..+......|.+++|+.+|. .||.|+.
T Consensus 256 V~~Wd~~~r--------Krl~q~~~~~~SI~slsfs~dG~-------------~LAia~s 294 (323)
T KOG1036|consen 256 VNIWDLFNR--------KRLKQLAKYETSISSLSFSMDGS-------------LLAIASS 294 (323)
T ss_pred EEEccCcch--------hhhhhccCCCCceEEEEeccCCC-------------eEEEEec
Confidence 999999873 55666666677899999999999 8888873
No 95
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.5e-29 Score=193.53 Aligned_cols=251 Identities=21% Similarity=0.354 Sum_probs=201.6
Q ss_pred EecCCCceEEEE--EeCCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEee
Q 041325 123 ATGNGDAVKSLV--VLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRR 200 (450)
Q Consensus 123 ~~~h~~~v~~l~--~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (450)
...|.+.|..+. |.+.+|+|++.|++|+|+.++.....
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s---------------------------------------- 46 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQS---------------------------------------- 46 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCc----------------------------------------
Confidence 457777777654 56888999999999999999887320
Q ss_pred cceeeeecCCCceEEEEEcc--CCCEEEEEeCCCcEEEEecCCCeEE--EEeecccccceEEEEEeecCCcE-EEEEcCC
Q 041325 201 HKKCTWVHHVDTVSALALSS--DGSLLYSTSWDRTFKIWRTSDFRCL--ESVKNAHDDAINAIVVSKSNDGF-VYTGSAD 275 (450)
Q Consensus 201 ~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~-l~~~~~d 275 (450)
.....+.+|.++|..++|-. .|.+|++++.||.|.||.-.+++-. .... .|...|++++|.|.+-++ |++++.|
T Consensus 47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~-~h~~SVNsV~wapheygl~LacasSD 125 (299)
T KOG1332|consen 47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHA-AHSASVNSVAWAPHEYGLLLACASSD 125 (299)
T ss_pred eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhh-hhcccceeecccccccceEEEEeeCC
Confidence 23345668999999999965 8999999999999999999887532 2333 789999999999977665 8899999
Q ss_pred CcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCC---C-----------CEEEEeeCCCcEEEEEcCCCceeee
Q 041325 276 TKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTD---G-----------TVLYSGACDRSILVWERDQGNYIVD 341 (450)
Q Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~---~-----------~~l~~g~~dg~i~vwd~~~~~~~~~ 341 (450)
|.|.+.+.+... .+........|.-.|++++|.|. | +.|++|+.|..|+||+..+++..
T Consensus 126 G~vsvl~~~~~g-----~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~-- 198 (299)
T KOG1332|consen 126 GKVSVLTYDSSG-----GWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWK-- 198 (299)
T ss_pred CcEEEEEEcCCC-----CccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchh--
Confidence 999999987652 23345566779999999999985 4 57999999999999999976433
Q ss_pred CCCCCCceeeeccccCCccceEEEEEeCC------eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEE
Q 041325 342 GDDDSGHMVLKGALRGHTKAILCLAVVSN------LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTA 415 (450)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 415 (450)
....+.+|...|..++|.|. +|+++++||+|.||-.... .+.+ ....++.....+..+.|
T Consensus 199 ---------~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e----~e~w-k~tll~~f~~~~w~vSW 264 (299)
T KOG1332|consen 199 ---------LERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE----YEPW-KKTLLEEFPDVVWRVSW 264 (299)
T ss_pred ---------hhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc----cCcc-cccccccCCcceEEEEE
Confidence 45668999999999999864 8999999999999987732 1111 12234446788999999
Q ss_pred EecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 416 VVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
+..+. +|+.++.|+.|.+|.
T Consensus 265 S~sGn-------------~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 265 SLSGN-------------ILAVSGGDNKVTLWK 284 (299)
T ss_pred ecccc-------------EEEEecCCcEEEEEE
Confidence 99999 999999999999996
No 96
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.97 E-value=3.3e-28 Score=206.80 Aligned_cols=281 Identities=18% Similarity=0.335 Sum_probs=223.7
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCe
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHK 148 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~ 148 (450)
.|..-|.+++. ..++++||+. |.|+|||+........ ...+-.......|.++...+|+ |++|++-.+
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~P-------vsqLdcl~rdnyiRSckL~pdgrtLivGGeast 488 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSP-------VSQLDCLNRDNYIRSCKLLPDGRTLIVGGEAST 488 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCc-------cccccccCcccceeeeEecCCCceEEeccccce
Confidence 69999999999 5788999987 8999999875421111 1111122345678888888877 999999999
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST 228 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 228 (450)
+.|||+...+... ...+....-...+++.+||.+..+++
T Consensus 489 lsiWDLAapTpri-----------------------------------------kaeltssapaCyALa~spDakvcFsc 527 (705)
T KOG0639|consen 489 LSIWDLAAPTPRI-----------------------------------------KAELTSSAPACYALAISPDAKVCFSC 527 (705)
T ss_pred eeeeeccCCCcch-----------------------------------------hhhcCCcchhhhhhhcCCccceeeee
Confidence 9999998774310 00111122357789999999999999
Q ss_pred eCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceE
Q 041325 229 SWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVT 308 (450)
Q Consensus 229 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 308 (450)
+.||.|.|||+.+...++.++ +|.+.+.||.++++ ...|.+|+-|++||-||++++. .+... ...+.|.
T Consensus 528 csdGnI~vwDLhnq~~Vrqfq-GhtDGascIdis~d-GtklWTGGlDntvRcWDlregr--------qlqqh-dF~SQIf 596 (705)
T KOG0639|consen 528 CSDGNIAVWDLHNQTLVRQFQ-GHTDGASCIDISKD-GTKLWTGGLDNTVRCWDLREGR--------QLQQH-DFSSQIF 596 (705)
T ss_pred ccCCcEEEEEcccceeeeccc-CCCCCceeEEecCC-CceeecCCCccceeehhhhhhh--------hhhhh-hhhhhhe
Confidence 999999999999999999999 99999999999974 3479999999999999998776 33332 2467899
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeC
Q 041325 309 ALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRR 386 (450)
Q Consensus 309 ~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~ 386 (450)
++-++|++.+++.|-+++.+-|......+ +..+..|...|.++.|. |+++++.+.|+.+..|..
T Consensus 597 SLg~cP~~dWlavGMens~vevlh~skp~--------------kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrt 662 (705)
T KOG0639|consen 597 SLGYCPTGDWLAVGMENSNVEVLHTSKPE--------------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT 662 (705)
T ss_pred ecccCCCccceeeecccCcEEEEecCCcc--------------ceeecccccEEEEEEecccCceeeecCchhhhhhccC
Confidence 99999999999999999999888776432 24667789999999987 889999999999999998
Q ss_pred CCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 387 SSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
.-+ ..+...+ ..+.|.++..+.|.+ +++||+.|....+|.+
T Consensus 663 PyG--------asiFqsk-E~SsVlsCDIS~ddk-------------yIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 663 PYG--------ASIFQSK-ESSSVLSCDISFDDK-------------YIVTGSGDKKATVYEV 703 (705)
T ss_pred ccc--------cceeecc-ccCcceeeeeccCce-------------EEEecCCCcceEEEEE
Confidence 765 2233333 467899999999999 9999999999999986
No 97
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=3.6e-28 Score=215.01 Aligned_cols=317 Identities=19% Similarity=0.230 Sum_probs=223.3
Q ss_pred EEEEEe--CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC------------Ce-EEEE
Q 041325 79 PSLAIA--GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG------------DK-LFSA 143 (450)
Q Consensus 79 ~~~~~d--~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~------------~~-l~s~ 143 (450)
-++.|| ...|...-.|..++|||+++-..+.. ...+.-|...|+.+.-.| .. ++++
T Consensus 328 IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk---------~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TC 398 (1080)
T KOG1408|consen 328 IACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGK---------CSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTC 398 (1080)
T ss_pred eEEEecCCCceEEEEEcCceEEEEeccccccccc---------eeeeeeccceeeeeccccccccCcccccCCccceeEe
Confidence 355665 67788888999999999987553222 123557888888887643 22 9999
Q ss_pred eCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCC
Q 041325 144 HQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGS 223 (450)
Q Consensus 144 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 223 (450)
+.|++||+|+++............+.. .+..++..++...... +....+..+......+..-.+.+++.+|+|+
T Consensus 399 SsD~TIRlW~l~~ctnn~vyrRNils~----~l~ki~y~d~~~q~~~--d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq 472 (1080)
T KOG1408|consen 399 SSDGTIRLWDLAFCTNNQVYRRNILSA----NLSKIPYEDSTQQIMH--DASAGIFDKALVSTCDSRFGFRALAVSPDGQ 472 (1080)
T ss_pred cCCCcEEEeecccccccceeecccchh----hhhcCccccCchhhhh--hccCCcccccchhhcCcccceEEEEECCCcc
Confidence 999999999998753321111111000 0000000000000000 0000001111112223445799999999999
Q ss_pred EEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecC--CcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHh
Q 041325 224 LLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSN--DGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLE 301 (450)
Q Consensus 224 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 301 (450)
+|++|..-|.+++||+.+.+....+. .|+..|.|+.++... ..+|++++.|..|++||+... ..+++++.
T Consensus 473 hLAsGDr~GnlrVy~Lq~l~~~~~~e-AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn-------y~l~qtld 544 (1080)
T KOG1408|consen 473 HLASGDRGGNLRVYDLQELEYTCFME-AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN-------YDLVQTLD 544 (1080)
T ss_pred eecccCccCceEEEEehhhhhhhhee-cccceeEEEeecCchhhhHhhhhccCCceEEEEecccc-------cchhhhhc
Confidence 99999999999999999988887777 999999999998422 236999999999999998543 23444444
Q ss_pred hcccce-------------------------------------------------EEEEEcCCCCEEEEeeCCCcEEEEE
Q 041325 302 KHKSAV-------------------------------------------------TALALSTDGTVLYSGACDRSILVWE 332 (450)
Q Consensus 302 ~~~~~i-------------------------------------------------~~l~~~~~~~~l~~g~~dg~i~vwd 332 (450)
+|.+.| ..|+..|..+++++++.|..|+|||
T Consensus 545 ~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~ 624 (1080)
T KOG1408|consen 545 GHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFD 624 (1080)
T ss_pred ccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEe
Confidence 444444 4555556677899999999999999
Q ss_pred cCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcce
Q 041325 333 RDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPV 410 (450)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v 410 (450)
+.+++....+ ..-..|.+....+..+ +.||++...|.++.++|+.++ +++..+.||...|
T Consensus 625 i~sgKq~k~F----------Kgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg--------EcvA~m~GHsE~V 686 (1080)
T KOG1408|consen 625 IESGKQVKSF----------KGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG--------ECVAQMTGHSEAV 686 (1080)
T ss_pred ccccceeeee----------cccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc--------hhhhhhcCcchhe
Confidence 9998866311 2234566666666666 559999999999999999986 8999999999999
Q ss_pred EEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 411 KCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 411 ~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+.+.|.+|-+ .|++.+.||.|.||.|
T Consensus 687 TG~kF~nDCk-------------HlISvsgDgCIFvW~l 712 (1080)
T KOG1408|consen 687 TGVKFLNDCK-------------HLISVSGDGCIFVWKL 712 (1080)
T ss_pred eeeeecccch-------------hheeecCCceEEEEEC
Confidence 9999999999 8999999999999986
No 98
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.2e-27 Score=192.16 Aligned_cols=316 Identities=18% Similarity=0.241 Sum_probs=209.7
Q ss_pred ceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-
Q 041325 63 HQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK- 139 (450)
Q Consensus 63 ~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~- 139 (450)
.-.+.+|+ ||.+.|++++| ||++|||++.|+.|++|++++-..... ..+...-.-+-.+.+.|.||-
T Consensus 76 pl~~~~LK--gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eH--------r~~R~nve~dhpT~V~FapDc~ 145 (420)
T KOG2096|consen 76 PLNVSVLK--GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEH--------RCIRQNVEYDHPTRVVFAPDCK 145 (420)
T ss_pred chhhhhhh--ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhh--------hHhhccccCCCceEEEECCCcc
Confidence 34456677 99999999999 899999999999999999987432111 000011111245788899887
Q ss_pred --EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEE
Q 041325 140 --LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALA 217 (450)
Q Consensus 140 --l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 217 (450)
++++-...++++|.+...+. +...... .....+. --..|.-.+..+-
T Consensus 146 s~vv~~~~g~~l~vyk~~K~~d------G~~~~~~-v~~D~~~------------------------f~~kh~v~~i~iG 194 (420)
T KOG2096|consen 146 SVVVSVKRGNKLCVYKLVKKTD------GSGSHHF-VHIDNLE------------------------FERKHQVDIINIG 194 (420)
T ss_pred eEEEEEccCCEEEEEEeeeccc------CCCCccc-ccccccc------------------------cchhcccceEEEe
Confidence 55666667899998865521 0000000 0000000 0013555677777
Q ss_pred EccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhh
Q 041325 218 LSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLV 297 (450)
Q Consensus 218 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 297 (450)
...++.++++++.|..|.+|+++ |+.+..+. .....-+..+.+|++ .++++++..--|++|.+--.+-........+
T Consensus 195 iA~~~k~imsas~dt~i~lw~lk-Gq~L~~id-tnq~~n~~aavSP~G-RFia~~gFTpDVkVwE~~f~kdG~fqev~rv 271 (420)
T KOG2096|consen 195 IAGNAKYIMSASLDTKICLWDLK-GQLLQSID-TNQSSNYDAAVSPDG-RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRV 271 (420)
T ss_pred ecCCceEEEEecCCCcEEEEecC-Cceeeeec-cccccccceeeCCCC-cEEEEecCCCCceEEEEEeccCcchhhhhhh
Confidence 77789999999999999999998 88888887 555666778899854 4899999999999999754432222334456
Q ss_pred hhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeee-ccccCCccceEEEEEe--CCeEEE
Q 041325 298 QTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLK-GALRGHTKAILCLAVV--SNLLFS 374 (450)
Q Consensus 298 ~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~--~~~l~s 374 (450)
..+++|.+.|..++|+++...+++.+.||++++||.+-.... ..++..+..- ..+....+.-..++.+ ++.|+.
T Consensus 272 f~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~---~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~ 348 (420)
T KOG2096|consen 272 FSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA---GQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAV 348 (420)
T ss_pred heeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec---CCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEe
Confidence 778899999999999999999999999999999998742211 1111000000 1111111222244444 455554
Q ss_pred EeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEE
Q 041325 375 GSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIW 447 (450)
Q Consensus 375 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw 447 (450)
+....++++..+.+.. ..+ .-..|...|.+++|+++|+ +++|+| |..+++.
T Consensus 349 -s~gs~l~~~~se~g~~-----~~~--~e~~h~~~Is~is~~~~g~-------------~~atcG-dr~vrv~ 399 (420)
T KOG2096|consen 349 -SFGSDLKVFASEDGKD-----YPE--LEDIHSTTISSISYSSDGK-------------YIATCG-DRYVRVI 399 (420)
T ss_pred -ecCCceEEEEcccCcc-----chh--HHHhhcCceeeEEecCCCc-------------EEeeec-ceeeeee
Confidence 4455799998887521 112 2245899999999999999 899887 5566664
No 99
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.5e-27 Score=188.55 Aligned_cols=262 Identities=15% Similarity=0.311 Sum_probs=201.6
Q ss_pred EecCCCceEEEEEe--CCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEee
Q 041325 123 ATGNGDAVKSLVVL--GDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRR 200 (450)
Q Consensus 123 ~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (450)
-.+|.+-|.++.|. ++++++|+.|++|+|||.+..... .
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~---------------------------------------W 49 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGT---------------------------------------W 49 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCc---------------------------------------e
Confidence 45888899999987 566999999999999998665321 1
Q ss_pred cceeeeecCCCceEEEEEcc--CCCEEEEEeCCCcEEEEecCC---------CeEEEEeecccccceEEEEEeecCCcE-
Q 041325 201 HKKCTWVHHVDTVSALALSS--DGSLLYSTSWDRTFKIWRTSD---------FRCLESVKNAHDDAINAIVVSKSNDGF- 268 (450)
Q Consensus 201 ~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~- 268 (450)
.....++.|.+.|..+.|-+ -|+.+|+++.|+++.||.-.. -.....+. ...+.|+.+.|.|..-++
T Consensus 50 ~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~-DsrssV~DV~FaP~hlGLk 128 (361)
T KOG2445|consen 50 SCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLV-DSRSSVTDVKFAPKHLGLK 128 (361)
T ss_pred EEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEee-cCCcceeEEEecchhcceE
Confidence 22335667999999999965 699999999999999997621 11233343 567899999999876664
Q ss_pred EEEEcCCCcEEEEeCcchhhhccccchhhhhHh-------hcccceEEEEEcC---CCCEEEEeeCC-----CcEEEEEc
Q 041325 269 VYTGSADTKIKVWKKLRAALQVNKKHSLVQTLE-------KHKSAVTALALST---DGTVLYSGACD-----RSILVWER 333 (450)
Q Consensus 269 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-------~~~~~i~~l~~~~---~~~~l~~g~~d-----g~i~vwd~ 333 (450)
+++++.||.+|||+....- ....+.+..++. .+.....|+.|+| ...+|+.|+.+ +.++||..
T Consensus 129 lA~~~aDG~lRIYEA~dp~--nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~ 206 (361)
T KOG2445|consen 129 LAAASADGILRIYEAPDPM--NLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEY 206 (361)
T ss_pred EEEeccCcEEEEEecCCcc--ccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEe
Confidence 8999999999999875532 123455666665 4667789999998 35688888876 47888887
Q ss_pred CCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC------eEEEEeCCCeEEEeeCCCCc------------cccCC
Q 041325 334 DQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN------LLFSGSSDNTIRIWRRSSSV------------TDHQK 395 (450)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~l~s~~~dg~v~iwd~~~~~------------~~~~~ 395 (450)
..+- ........+.+|..+|+.++|.|+ +||+++.|| |+||++.... .....
T Consensus 207 ~e~~---------rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l 276 (361)
T KOG2445|consen 207 NENG---------RKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDL 276 (361)
T ss_pred cCCc---------ceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCcccc
Confidence 6532 233455678899999999999865 899999999 9999988421 01123
Q ss_pred CceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 396 GYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 396 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
..+.+..+.+|.+.|..+.|.-.|. .|++.|.||+||+|+.
T Consensus 277 ~v~~vs~~~~H~~~VWrv~wNmtGt-------------iLsStGdDG~VRLWka 317 (361)
T KOG2445|consen 277 PVEKVSELDDHNGEVWRVRWNMTGT-------------ILSSTGDDGCVRLWKA 317 (361)
T ss_pred ceEEeeeccCCCCceEEEEEeeeee-------------EEeecCCCceeeehhh
Confidence 4566778899999999999999999 9999999999999963
No 100
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=2.9e-27 Score=181.03 Aligned_cols=299 Identities=18% Similarity=0.251 Sum_probs=224.6
Q ss_pred ccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEE
Q 041325 13 RNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYG 90 (450)
Q Consensus 13 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~t 90 (450)
-++...|.|.+..-+..+++.+++...- |.+.... .-.+.+..++-...++-+ .|.+.|.|.+| +|++|+|
T Consensus 34 airav~fhp~g~lyavgsnskt~ric~y----p~l~~~r-~~hea~~~pp~v~~kr~k--hhkgsiyc~~ws~~geliat 106 (350)
T KOG0641|consen 34 AIRAVAFHPAGGLYAVGSNSKTFRICAY----PALIDLR-HAHEAAKQPPSVLCKRNK--HHKGSIYCTAWSPCGELIAT 106 (350)
T ss_pred heeeEEecCCCceEEeccCCceEEEEcc----ccccCcc-cccccccCCCeEEeeecc--ccCccEEEEEecCccCeEEe
Confidence 4678899999999999988888876321 1111110 011112222224445555 89999999999 7999999
Q ss_pred eeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe------EEEEeC-CCeEEEEEcCCCceeEEe
Q 041325 91 GSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK------LFSAHQ-DHKIRVWKIDNNTSAYYS 163 (450)
Q Consensus 91 gs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~------l~s~~~-dg~i~iw~~~~~~~~~~~ 163 (450)
|+.|.+|++--++...+... ...+.+..|.+.|..++|..+- |++++. |..|++-|-..+
T Consensus 107 gsndk~ik~l~fn~dt~~~~-------g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g------ 173 (350)
T KOG0641|consen 107 GSNDKTIKVLPFNADTCNAT-------GHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG------ 173 (350)
T ss_pred cCCCceEEEEeccccccccc-------CcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC------
Confidence 99999999987665443322 1223477899999999997332 666554 566666676666
Q ss_pred ccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCe
Q 041325 164 TSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFR 243 (450)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 243 (450)
.....+.+|++.|.++ ++=++-++++|+.|.+|++||++-..
T Consensus 174 -------------------------------------~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~ 215 (350)
T KOG0641|consen 174 -------------------------------------QGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNS 215 (350)
T ss_pred -------------------------------------CcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccc
Confidence 2333455799988876 44568899999999999999999988
Q ss_pred EEEEeecc------cccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCC
Q 041325 244 CLESVKNA------HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGT 317 (450)
Q Consensus 244 ~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~ 317 (450)
++..+... ....|.++++.|.+ .+|++|..|....+||++.+. .++.+..|...|.++.|+|...
T Consensus 216 ~v~~l~~~~~~~glessavaav~vdpsg-rll~sg~~dssc~lydirg~r--------~iq~f~phsadir~vrfsp~a~ 286 (350)
T KOG0641|consen 216 CVNTLDNDFHDGGLESSAVAAVAVDPSG-RLLASGHADSSCMLYDIRGGR--------MIQRFHPHSADIRCVRFSPGAH 286 (350)
T ss_pred eeeeccCcccCCCcccceeEEEEECCCc-ceeeeccCCCceEEEEeeCCc--------eeeeeCCCccceeEEEeCCCce
Confidence 88877531 23578999999854 499999999999999998877 8899999999999999999999
Q ss_pred EEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCC
Q 041325 318 VLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 318 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~ 387 (450)
++++++.|..|++-|+... ............|...+..+.|.+. -+++.+.|.++.+|-++
T Consensus 287 yllt~syd~~ikltdlqgd---------la~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 287 YLLTCSYDMKIKLTDLQGD---------LAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred EEEEecccceEEEeecccc---------hhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 9999999999999998732 1111233455678888999999976 78899999999999764
No 101
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.8e-28 Score=189.63 Aligned_cols=250 Identities=22% Similarity=0.305 Sum_probs=196.5
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe-CCe---EEEEeCC
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL-GDK---LFSAHQD 146 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~---l~s~~~d 146 (450)
.|.+.|..+.. -|++|||++.|++|+|+.......... ...+.||.++|+.++|. |.. |++++.|
T Consensus 9 ~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~l---------l~~L~Gh~GPVwqv~wahPk~G~iLAScsYD 79 (299)
T KOG1332|consen 9 QHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKL---------LAELTGHSGPVWKVAWAHPKFGTILASCSYD 79 (299)
T ss_pred hhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCcee---------eeEecCCCCCeeEEeecccccCcEeeEeecC
Confidence 89999998877 499999999999999999887653211 23488999999999997 333 9999999
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc--CCCE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS--DGSL 224 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~ 224 (450)
|.|.||.-+++.- ........|...|++++|.| -|-.
T Consensus 80 gkVIiWke~~g~w-----------------------------------------~k~~e~~~h~~SVNsV~wapheygl~ 118 (299)
T KOG1332|consen 80 GKVIIWKEENGRW-----------------------------------------TKAYEHAAHSASVNSVAWAPHEYGLL 118 (299)
T ss_pred ceEEEEecCCCch-----------------------------------------hhhhhhhhhcccceeecccccccceE
Confidence 9999999988721 22233446999999999998 4678
Q ss_pred EEEEeCCCcEEEEecCCC--eEEEEeecccccceEEEEEeecCC-------------cEEEEEcCCCcEEEEeCcchhhh
Q 041325 225 LYSTSWDRTFKIWRTSDF--RCLESVKNAHDDAINAIVVSKSND-------------GFVYTGSADTKIKVWKKLRAALQ 289 (450)
Q Consensus 225 l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~-------------~~l~~~~~dg~i~vwd~~~~~~~ 289 (450)
|++++.||.|.|.+.+.. -....+...|.-.|++++|.|..- ..|++|+.|+.|+||+...+.
T Consensus 119 LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~-- 196 (299)
T KOG1332|consen 119 LACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDS-- 196 (299)
T ss_pred EEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcc--
Confidence 999999999999988753 344445558999999999998521 259999999999999987653
Q ss_pred ccccchhhhhHhhcccceEEEEEcCCC----CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEE
Q 041325 290 VNKKHSLVQTLEKHKSAVTALALSTDG----TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL 365 (450)
Q Consensus 290 ~~~~~~~~~~~~~~~~~i~~l~~~~~~----~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 365 (450)
+.....+.+|...|+.++|.|.- .+|++++.||++.||..+.... .. ....+......+..+
T Consensus 197 ----w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e-------~w---k~tll~~f~~~~w~v 262 (299)
T KOG1332|consen 197 ----WKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE-------PW---KKTLLEEFPDVVWRV 262 (299)
T ss_pred ----hhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC-------cc---cccccccCCcceEEE
Confidence 44666799999999999999953 5899999999999998773210 11 112233355678888
Q ss_pred EEe--CCeEEEEeCCCeEEEeeCCC
Q 041325 366 AVV--SNLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 366 ~~~--~~~l~s~~~dg~v~iwd~~~ 388 (450)
+|+ ++.|+.++.|+.|.+|.-+.
T Consensus 263 SWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 263 SWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred EEeccccEEEEecCCcEEEEEEeCC
Confidence 887 88999999999999997553
No 102
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=6e-29 Score=200.19 Aligned_cols=248 Identities=17% Similarity=0.267 Sum_probs=204.6
Q ss_pred cCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecc
Q 041325 125 GNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHK 202 (450)
Q Consensus 125 ~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (450)
+...-+.|..|+||+ |++|+.||.|.+||..+++...... -+.
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLk-----------------------------------YQA 255 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLK-----------------------------------YQA 255 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhh-----------------------------------hhh
Confidence 556678899999988 9999999999999999885321000 011
Q ss_pred eeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEe
Q 041325 203 KCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWK 282 (450)
Q Consensus 203 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd 282 (450)
.-.+.-+.++|.|+.|+.|..++++|+.||.|++|.+++|.|++.+...|...|+++.|+.++. .+++++.|.++++--
T Consensus 256 qd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~S-qiLS~sfD~tvRiHG 334 (508)
T KOG0275|consen 256 QDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNS-QILSASFDQTVRIHG 334 (508)
T ss_pred hcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcc-hhhcccccceEEEec
Confidence 1123347789999999999999999999999999999999999999989999999999997544 789999999999999
Q ss_pred CcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccce
Q 041325 283 KLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI 362 (450)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 362 (450)
+..++ .++.+.+|.+-|+...|.+||..+++++.||+|++|+..+.+++..+ ...+...+|
T Consensus 335 lKSGK--------~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tf-----------k~~~~d~~v 395 (508)
T KOG0275|consen 335 LKSGK--------CLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTF-----------KPLGTDYPV 395 (508)
T ss_pred cccch--------hHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhc-----------cCCCCcccc
Confidence 98877 89999999999999999999999999999999999999998877322 223345667
Q ss_pred EEEEEe---CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecC---CCcceEEEEEEecCCCCCCCCCCCCceEEEE
Q 041325 363 LCLAVV---SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG---HRRPVKCLTAVVDSDYSNRNSDHSSTSFLVY 436 (450)
Q Consensus 363 ~~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~ 436 (450)
..+..- +..++.|...++|+|.++.. +.+..+.. ..+...+...+|.|. ++.
T Consensus 396 nsv~~~PKnpeh~iVCNrsntv~imn~qG---------QvVrsfsSGkREgGdFi~~~lSpkGe-------------wiY 453 (508)
T KOG0275|consen 396 NSVILLPKNPEHFIVCNRSNTVYIMNMQG---------QVVRSFSSGKREGGDFINAILSPKGE-------------WIY 453 (508)
T ss_pred eeEEEcCCCCceEEEEcCCCeEEEEeccc---------eEEeeeccCCccCCceEEEEecCCCc-------------EEE
Confidence 776664 45999999999999999884 55555532 344566777889988 999
Q ss_pred EcccCCcEEEEEe
Q 041325 437 SGSLDCEIKIWQI 449 (450)
Q Consensus 437 s~~~Dg~i~iw~l 449 (450)
+.+.|+.++.+.+
T Consensus 454 cigED~vlYCF~~ 466 (508)
T KOG0275|consen 454 CIGEDGVLYCFSV 466 (508)
T ss_pred EEccCcEEEEEEe
Confidence 9999999988864
No 103
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.2e-27 Score=187.61 Aligned_cols=281 Identities=14% Similarity=0.246 Sum_probs=204.4
Q ss_pred CCCcceEEEEEe--CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe-CCe---EEEEeCC
Q 041325 73 GNSSYIPSLAIA--GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL-GDK---LFSAHQD 146 (450)
Q Consensus 73 ~h~~~v~~~~~d--~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~---l~s~~~d 146 (450)
+|.+-|.|+.|| |+++|||+.|++|+|||.++..-... .......|.+.|..+.|. |.. +++++.|
T Consensus 11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~--------~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~D 82 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWS--------CTSSWRAHDGSIWRVVWAHPEFGQVVATCSYD 82 (361)
T ss_pred CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceE--------EeeeEEecCCcEEEEEecCccccceEEEEecC
Confidence 899999999995 99999999999999999754432222 112367899999999997 433 9999999
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc--CCCE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS--DGSL 224 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~ 224 (450)
+++.||.-..... ...... ......+....+.|+++.|.| -|-.
T Consensus 83 rtv~iWEE~~~~~-------~~~~~~---------------------------Wv~~ttl~DsrssV~DV~FaP~hlGLk 128 (361)
T KOG2445|consen 83 RTVSIWEEQEKSE-------EAHGRR---------------------------WVRRTTLVDSRSSVTDVKFAPKHLGLK 128 (361)
T ss_pred Cceeeeeeccccc-------ccccce---------------------------eEEEEEeecCCcceeEEEecchhcceE
Confidence 9999998642210 000001 112233445777899999999 5778
Q ss_pred EEEEeCCCcEEEEecCCCeEEEEee------------cccccceEEEEEeecCC--cEEEEEcCC-----CcEEEEeCcc
Q 041325 225 LYSTSWDRTFKIWRTSDFRCLESVK------------NAHDDAINAIVVSKSND--GFVYTGSAD-----TKIKVWKKLR 285 (450)
Q Consensus 225 l~~~~~dg~i~iwd~~~~~~~~~~~------------~~~~~~v~~~~~~~~~~--~~l~~~~~d-----g~i~vwd~~~ 285 (450)
|++++.||.+|||+..+.-.+.... ..+..+..|+.|+|..- .+|++|+.+ +.+.||....
T Consensus 129 lA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e 208 (361)
T KOG2445|consen 129 LAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNE 208 (361)
T ss_pred EEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecC
Confidence 9999999999999876543332221 13556788999986432 257777766 5789998765
Q ss_pred hhhhccccchhhhhHhhcccceEEEEEcCC----CCEEEEeeCCCcEEEEEcCCCce-------eeeCCCCCCceeeecc
Q 041325 286 AALQVNKKHSLVQTLEKHKSAVTALALSTD----GTVLYSGACDRSILVWERDQGNY-------IVDGDDDSGHMVLKGA 354 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~----~~~l~~g~~dg~i~vwd~~~~~~-------~~~~~~~~~~~~~~~~ 354 (450)
.. +.+..+.++.+|..+|+.++|.|+ -.+|++++.|| |+||.+..... ................
T Consensus 209 ~~----rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~ 283 (361)
T KOG2445|consen 209 NG----RKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSE 283 (361)
T ss_pred Cc----ceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeee
Confidence 54 566677888899999999999995 35899999999 99999984221 1011111233455567
Q ss_pred ccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecC
Q 041325 355 LRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG 405 (450)
Q Consensus 355 ~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 405 (450)
+..|.+.|..+.|+ |..|++.+.||.||+|...- ...++|...+..
T Consensus 284 ~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany-----~n~~kC~sv~~~ 331 (361)
T KOG2445|consen 284 LDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY-----NNLWKCTSVLKA 331 (361)
T ss_pred ccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh-----hhhheeeeEEec
Confidence 88999999999998 88999999999999998764 334566666654
No 104
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.96 E-value=2.1e-26 Score=195.97 Aligned_cols=362 Identities=19% Similarity=0.212 Sum_probs=244.4
Q ss_pred ccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCC-cceEEEEE-eCCEEEE
Q 041325 13 RNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNS-SYIPSLAI-AGKLLYG 90 (450)
Q Consensus 13 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~-~~v~~~~~-d~~~l~t 90 (450)
-+..+.|.|..+.+........+.|- ...... -.+..-.|+ +++ ..|.|++| .+.-++|
T Consensus 202 ~v~~a~FHPtd~nliit~Gk~H~~Fw---------~~~~~~--------l~k~~~~fe--k~ekk~Vl~v~F~engdviT 262 (626)
T KOG2106|consen 202 VVFLATFHPTDPNLIITCGKGHLYFW---------TLRGGS--------LVKRQGIFE--KREKKFVLCVTFLENGDVIT 262 (626)
T ss_pred eEEEEEeccCCCcEEEEeCCceEEEE---------EccCCc--------eEEEeeccc--cccceEEEEEEEcCCCCEEe
Confidence 44566777777777777666666652 000000 012223344 333 57999999 6677899
Q ss_pred eeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEEEcCCCceeEEeccCccc
Q 041325 91 GSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVWKIDNNTSAYYSTSGKLK 169 (450)
Q Consensus 91 gs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 169 (450)
|..+|.|.||+..+.+..+. ...|.+.|.+++...++ |++|+.|+.|..||-.-.+.. + ...
T Consensus 263 gDS~G~i~Iw~~~~~~~~k~------------~~aH~ggv~~L~~lr~GtllSGgKDRki~~Wd~~y~k~r----~-~el 325 (626)
T KOG2106|consen 263 GDSGGNILIWSKGTNRISKQ------------VHAHDGGVFSLCMLRDGTLLSGGKDRKIILWDDNYRKLR----E-TEL 325 (626)
T ss_pred ecCCceEEEEeCCCceEEeE------------eeecCCceEEEEEecCccEeecCccceEEeccccccccc----c-ccC
Confidence 99999999999877765554 33899999999999887 999999999999993222111 1 111
Q ss_pred ccceeeeeeccCCCcceeEeeecCceEE--EeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEE
Q 041325 170 NKYYERIATLPTLNDRFTKCFLANNYVQ--VRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLES 247 (450)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 247 (450)
+...-.+.++......+.+....+..++ +.+.......+|.+....++.+|+.+++++++.|+.+++|+ ..+....
T Consensus 326 Pe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt 403 (626)
T KOG2106|consen 326 PEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWT 403 (626)
T ss_pred chhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEE
Confidence 1111223333322222333333332222 22334455678999999999999999999999999999999 4444444
Q ss_pred eecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCc
Q 041325 248 VKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRS 327 (450)
Q Consensus 248 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~ 327 (450)
.. ...++.++.|+|.+ .++.|+..|...+.|.++.. .+..-. .++++++++|+|+|.+||.|+.|+.
T Consensus 404 ~~--~~d~~~~~~fhpsg--~va~Gt~~G~w~V~d~e~~~--------lv~~~~-d~~~ls~v~ysp~G~~lAvgs~d~~ 470 (626)
T KOG2106|consen 404 KI--IEDPAECADFHPSG--VVAVGTATGRWFVLDTETQD--------LVTIHT-DNEQLSVVRYSPDGAFLAVGSHDNH 470 (626)
T ss_pred EE--ecCceeEeeccCcc--eEEEeeccceEEEEecccce--------eEEEEe-cCCceEEEEEcCCCCEEEEecCCCe
Confidence 43 56889999999844 99999999999999987744 333333 3789999999999999999999999
Q ss_pred EEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEEeeCCCCccc-------------
Q 041325 328 ILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTD------------- 392 (450)
Q Consensus 328 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~------------- 392 (450)
|++|.+......+ ...... +..+|+.+.|+. +++.+-+.|-.|..|....-...
T Consensus 471 iyiy~Vs~~g~~y---------~r~~k~--~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c 539 (626)
T KOG2106|consen 471 IYIYRVSANGRKY---------SRVGKC--SGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTC 539 (626)
T ss_pred EEEEEECCCCcEE---------EEeeee--cCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEE
Confidence 9999987654321 111122 225666666653 36666666666666622110000
Q ss_pred ------------------------------------------cCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCC
Q 041325 393 ------------------------------------------HQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSS 430 (450)
Q Consensus 393 ------------------------------------------~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~ 430 (450)
-.........+.+|.+-|++++|.-+..
T Consensus 540 ~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~---------- 609 (626)
T KOG2106|consen 540 TLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDS---------- 609 (626)
T ss_pred EEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCc----------
Confidence 0122344556788999999999999988
Q ss_pred ceEEEEEcccCCcEEEEEe
Q 041325 431 TSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 431 ~~~~l~s~~~Dg~i~iw~l 449 (450)
.+++.+.|.+|..|++
T Consensus 610 ---~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 610 ---HLISTGKDTSIMQWRL 625 (626)
T ss_pred ---eEEecCCCceEEEEEe
Confidence 7888889999999997
No 105
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.2e-28 Score=217.13 Aligned_cols=284 Identities=14% Similarity=0.205 Sum_probs=214.6
Q ss_pred ceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe---CCeEEEEeCCCeEEE
Q 041325 77 YIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL---GDKLFSAHQDHKIRV 151 (450)
Q Consensus 77 ~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~i 151 (450)
...+++. +-..++.++. ..+.|+.+................... .-.+..+.|. .+.|++++..|.|.+
T Consensus 41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~-----~~S~~DVkW~~~~~NlIAT~s~nG~i~v 114 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNK-----FYSAADVKWGQLYSNLIATCSTNGVISV 114 (839)
T ss_pred ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccce-----eeehhhcccccchhhhheeecCCCcEEE
Confidence 3455555 5556666655 467777665433211111000111110 1244556666 334999999999999
Q ss_pred EEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEEEEEeC
Q 041325 152 WKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLYSTSW 230 (450)
Q Consensus 152 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~ 230 (450)
||+.... +......+..|...++++.|++ ...+|++|+.
T Consensus 115 Wdlnk~~----------------------------------------rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQ 154 (839)
T KOG0269|consen 115 WDLNKSI----------------------------------------RNKLLTVFNEHERSANKLDFHSTEPNILISGSQ 154 (839)
T ss_pred EecCccc----------------------------------------cchhhhHhhhhccceeeeeeccCCccEEEecCC
Confidence 9998631 1122234557999999999999 6788999999
Q ss_pred CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEE
Q 041325 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310 (450)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l 310 (450)
||+|++||++..+....+. .....|..|.|+|..++.++++...|.+++||++... .....+.+|.++|.++
T Consensus 155 Dg~vK~~DlR~~~S~~t~~-~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~-------r~~~k~~AH~GpV~c~ 226 (839)
T KOG0269|consen 155 DGTVKCWDLRSKKSKSTFR-SNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD-------RCEKKLTAHNGPVLCL 226 (839)
T ss_pred CceEEEEeeeccccccccc-ccchhhhceeeccCCCceEEEecCCceEEEeeccCch-------hHHHHhhcccCceEEE
Confidence 9999999999988888887 6888999999999888899999999999999998654 4778888999999999
Q ss_pred EEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC---eEEEEeC--CCeEEEee
Q 041325 311 ALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN---LLFSGSS--DNTIRIWR 385 (450)
Q Consensus 311 ~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~~~--dg~v~iwd 385 (450)
.|+|++.+||+|+.|+.|+|||..+++.. . ........+|.++.|-|. +|++++. |-.|+|||
T Consensus 227 nwhPnr~~lATGGRDK~vkiWd~t~~~~~-----------~-~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWD 294 (839)
T KOG0269|consen 227 NWHPNREWLATGGRDKMVKIWDMTDSRAK-----------P-KHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWD 294 (839)
T ss_pred eecCCCceeeecCCCccEEEEeccCCCcc-----------c-eeEEeecceeeeeeeccCccchhhhhhccccceEEEEe
Confidence 99999999999999999999999865421 1 111223467899999865 7888775 67899999
Q ss_pred CCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEE
Q 041325 386 RSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIK 445 (450)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~ 445 (450)
++.. +.+...+..|...++.++|...... .+.+++.||+|.
T Consensus 295 vrRP-------YIP~~t~~eH~~~vt~i~W~~~d~~------------~l~s~sKD~tv~ 335 (839)
T KOG0269|consen 295 VRRP-------YIPYATFLEHTDSVTGIAWDSGDRI------------NLWSCSKDGTVL 335 (839)
T ss_pred eccc-------cccceeeeccCccccceeccCCCce------------eeEeecCccHHH
Confidence 9864 6788889999999999999774332 899999999874
No 106
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.8e-27 Score=199.01 Aligned_cols=259 Identities=26% Similarity=0.402 Sum_probs=207.4
Q ss_pred eEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEE
Q 041325 121 VVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQV 198 (450)
Q Consensus 121 ~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (450)
.....|.-+|.+++++++. .++++.||+|.-|++.++.............. ....+
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k----~~~~~------------------ 193 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLK----SHGNP------------------ 193 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhh----hccCC------------------
Confidence 3467899999999999885 99999999999999999854321111100000 00000
Q ss_pred eecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcE
Q 041325 199 RRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKI 278 (450)
Q Consensus 199 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 278 (450)
..... ..|.+.+.+++.++||++|++|+.|..|.||+.++.+.+..+. +|.+.|.+++|-. +...+++++.|+.|
T Consensus 194 --~k~~r-~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~-ghr~~V~~L~fr~-gt~~lys~s~Drsv 268 (479)
T KOG0299|consen 194 --LKESR-KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFK-GHRGAVSSLAFRK-GTSELYSASADRSV 268 (479)
T ss_pred --CCccc-ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhccc-ccccceeeeeeec-CccceeeeecCCce
Confidence 00001 3699999999999999999999999999999999999999988 8999999999986 45579999999999
Q ss_pred EEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC
Q 041325 279 KVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358 (450)
Q Consensus 279 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (450)
++|++.... .+.++.+|.+.|..|....-++.+-+|+.|+++++|++..... ..+.+|
T Consensus 269 kvw~~~~~s--------~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq--------------lifrg~ 326 (479)
T KOG0299|consen 269 KVWSIDQLS--------YVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ--------------LIFRGG 326 (479)
T ss_pred EEEehhHhH--------HHHHHhCCccceeeechhcccceEEeccccceeEEEeccccce--------------eeeeCC
Confidence 999996655 8889999999999999888888888888999999999975433 356778
Q ss_pred ccceEEEEEe-CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEe------------cCCCcceEEEEEEecCCCCCCC
Q 041325 359 TKAILCLAVV-SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVL------------EGHRRPVKCLTAVVDSDYSNRN 425 (450)
Q Consensus 359 ~~~v~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~------------~~h~~~v~~l~~~~~~~~~~~~ 425 (450)
.+.+-|++|- .+.+++|+.||.|.+|++.... ++... ..+...|++|+..|...
T Consensus 327 ~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKk--------plf~~~~AHgv~~~~~~~~~~~Witsla~i~~sd----- 393 (479)
T KOG0299|consen 327 EGSIDCVAFINDEHFVSGSDNGSIALWSLLKKK--------PLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSD----- 393 (479)
T ss_pred CCCeeeEEEecccceeeccCCceEEEeeecccC--------ceeEeeccccccCCccccccccceeeeEecccCc-----
Confidence 8899999997 5599999999999999988642 22211 11234789999999988
Q ss_pred CCCCCceEEEEEcccCCcEEEEEe
Q 041325 426 SDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 426 ~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
++++|+.+|.|++|.+
T Consensus 394 --------L~asGS~~G~vrLW~i 409 (479)
T KOG0299|consen 394 --------LLASGSWSGCVRLWKI 409 (479)
T ss_pred --------eEEecCCCCceEEEEe
Confidence 9999999999999986
No 107
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=7.2e-27 Score=206.90 Aligned_cols=374 Identities=18% Similarity=0.232 Sum_probs=248.1
Q ss_pred CCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEee--CCCcEEEecCCCCCceeeeecCCCC
Q 041325 42 PSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGS--SNGEIRAWNRDPNNYVNITSTDVGD 117 (450)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs--~dg~v~vw~~~~~~~~~~~~~~~~~ 117 (450)
|-...++....+-+..+.......-+.+. .|..+++|++| +|+|+|||- ....++||++.....+..
T Consensus 47 p~Sgl~aYpAGCvVVlfn~~~~tQ~hlvn--ssRk~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAE------- 117 (1080)
T KOG1408|consen 47 PCSGLCAYPAGCVVVLFNVDSCTQSHLVN--SSRKPLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAE------- 117 (1080)
T ss_pred ccccceeeccCcEEEEEcccccchhheec--ccCcceeEEEEcCCCcEEEecccCCCccceeeeeccccchhh-------
Confidence 33345666667777777777777777777 89999999999 899999985 567899999998776555
Q ss_pred cceeEEecCCCceEEEEEeCCe--EEEEeC--CCeEEEEEcCCCce------------eEEeccC-------cccccce-
Q 041325 118 HANVVATGNGDAVKSLVVLGDK--LFSAHQ--DHKIRVWKIDNNTS------------AYYSTSG-------KLKNKYY- 173 (450)
Q Consensus 118 ~~~~~~~~h~~~v~~l~~~~~~--l~s~~~--dg~i~iw~~~~~~~------------~~~~~~~-------~~~~~~~- 173 (450)
+..|.-.|+|++|+|.. +++.+. |-.|.+||++.... +.+...+ ....+.+
T Consensus 118 -----fvdHKY~vtcvaFsp~~kyvvSVGsQHDMIVnv~dWr~N~~~asnkiss~Vsav~fsEdgSYfvT~gnrHvk~wy 192 (1080)
T KOG1408|consen 118 -----FVDHKYNVTCVAFSPGNKYVVSVGSQHDMIVNVNDWRVNSSGASNKISSVVSAVAFSEDGSYFVTSGNRHVKLWY 192 (1080)
T ss_pred -----hhhccccceeeeecCCCcEEEeeccccceEEEhhhhhhcccccccccceeEEEEEEccCCceeeeeeeeeEEEEE
Confidence 77899999999999766 665544 45677887654321 0011111 0000000
Q ss_pred -----eeeeeccCC--------------------------------------------------------------Ccce
Q 041325 174 -----ERIATLPTL--------------------------------------------------------------NDRF 186 (450)
Q Consensus 174 -----~~~~~~~~~--------------------------------------------------------------~~~~ 186 (450)
.....+|.. ..++
T Consensus 193 l~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcVs~r~ 272 (1080)
T KOG1408|consen 193 LQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICVSSRL 272 (1080)
T ss_pred eeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeeeecce
Confidence 000000000 0111
Q ss_pred eEeeecCceEEEeecceeee------------------------ecC----CCceEEEEEccCCCEEEEEeCCCcEEEEe
Q 041325 187 TKCFLANNYVQVRRHKKCTW------------------------VHH----VDTVSALALSSDGSLLYSTSWDRTFKIWR 238 (450)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~------------------------~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 238 (450)
..+...++.+++.......+ .+. --...++.|++....|.+...|..+++||
T Consensus 273 I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWD 352 (1080)
T KOG1408|consen 273 IACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWD 352 (1080)
T ss_pred EEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEe
Confidence 11222222222221111100 000 01234677888888999999999999999
Q ss_pred cCCCeEEEE---eecccccceEEEEEeec----------CCcEEEEEcCCCcEEEEeCcchhhhccc-------------
Q 041325 239 TSDFRCLES---VKNAHDDAINAIVVSKS----------NDGFVYTGSADTKIKVWKKLRAALQVNK------------- 292 (450)
Q Consensus 239 ~~~~~~~~~---~~~~~~~~v~~~~~~~~----------~~~~l~~~~~dg~i~vwd~~~~~~~~~~------------- 292 (450)
+++-+.+.. +. .|...|+.+...|. ..+.+++++.|++||+||+.........
T Consensus 353 vrD~~kvgk~~s~l-yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~ 431 (1080)
T KOG1408|consen 353 VRDVNKVGKCSSML-YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIP 431 (1080)
T ss_pred ccccccccceeeee-eccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCc
Confidence 987543322 22 47788888876652 1236999999999999998763211000
Q ss_pred ----cc------------hhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeecccc
Q 041325 293 ----KH------------SLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALR 356 (450)
Q Consensus 293 ----~~------------~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 356 (450)
.. +.....-+....+.+++.+|+|++|++|..-|.|+||++.+.+. ...+.
T Consensus 432 y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~-------------~~~~e 498 (1080)
T KOG1408|consen 432 YEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY-------------TCFME 498 (1080)
T ss_pred cccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh-------------hhhee
Confidence 00 00001112345689999999999999999999999999987653 36788
Q ss_pred CCccceEEEEEeC-----CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCC----------
Q 041325 357 GHTKAILCLAVVS-----NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDY---------- 421 (450)
Q Consensus 357 ~~~~~v~~~~~~~-----~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~---------- 421 (450)
+|...|.|+.|+. .+|++++.|+.|.|||+... +.++.++.+|...|+++.|.-++--
T Consensus 499 AHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn-------y~l~qtld~HSssITsvKFa~~gln~~MiscGADk 571 (1080)
T KOG1408|consen 499 AHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN-------YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADK 571 (1080)
T ss_pred cccceeEEEeecCchhhhHhhhhccCCceEEEEecccc-------cchhhhhcccccceeEEEEeecCCceEEEeccCch
Confidence 9999999999982 39999999999999999753 6788999999999999999877621
Q ss_pred --------------------------CCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 422 --------------------------SNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 422 --------------------------~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
-.+..+..+...++++++.|..|+||+++
T Consensus 572 simFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~ 626 (1080)
T KOG1408|consen 572 SIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIE 626 (1080)
T ss_pred hhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEecc
Confidence 01112445666788999999999999874
No 108
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=4.8e-27 Score=211.37 Aligned_cols=331 Identities=19% Similarity=0.225 Sum_probs=254.0
Q ss_pred CCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCC
Q 041325 40 SLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGD 117 (450)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~ 117 (450)
+.+--..+......+.+++.-.+++.+++++ ++...|+++.- -=..+|.|..+|+|.|+|+..++.+..
T Consensus 169 ~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~--~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~s------- 239 (910)
T KOG1539|consen 169 STYLNKIVVGSSQGRLQLWNVRTGKVVYTFQ--EFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMS------- 239 (910)
T ss_pred hhheeeEEEeecCCcEEEEEeccCcEEEEec--ccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEE-------
Confidence 3333344455666788889999999999999 99999999988 467899999999999999999987766
Q ss_pred cceeEEecCCCceEEEEEeCCe---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCc
Q 041325 118 HANVVATGNGDAVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANN 194 (450)
Q Consensus 118 ~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (450)
+...-+.|++++|..|+ +++|+..|.+.+||++.... +..
T Consensus 240 -----Fk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl----------------~~v---------------- 282 (910)
T KOG1539|consen 240 -----FKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKL----------------INV---------------- 282 (910)
T ss_pred -----EEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCee----------------eee----------------
Confidence 44445899999999666 88888899999999998732 111
Q ss_pred eEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCe---EEEEeecccccceEEEEEeecCCcEEEE
Q 041325 195 YVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFR---CLESVKNAHDDAINAIVVSKSNDGFVYT 271 (450)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 271 (450)
....|.+.|..+.|.+....+++.+.|+.+++|=.+++. .+...+.+|..+..++.|......++.+
T Consensus 283 ----------~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ils 352 (910)
T KOG1539|consen 283 ----------TRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILS 352 (910)
T ss_pred ----------eeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEe
Confidence 122588899999999999999999999999998665443 2334455899999999999766668999
Q ss_pred EcCCCcEEEEeCcchhhhcc--------------c--------------------------------------cch----
Q 041325 272 GSADTKIKVWKKLRAALQVN--------------K--------------------------------------KHS---- 295 (450)
Q Consensus 272 ~~~dg~i~vwd~~~~~~~~~--------------~--------------------------------------~~~---- 295 (450)
++.|++++.+++........ . .+.
T Consensus 353 a~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~ 432 (910)
T KOG1539|consen 353 AKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNK 432 (910)
T ss_pred cccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCc
Confidence 99999888887644321100 0 000
Q ss_pred -h------hhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe
Q 041325 296 -L------VQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV 368 (450)
Q Consensus 296 -~------~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 368 (450)
. ...++.....+++++.++.|++.+.|...|.|-+|++.+|-... --..-..|..+|++++.+
T Consensus 433 ~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~----------sf~~~~ah~~~V~gla~D 502 (910)
T KOG1539|consen 433 TSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRK----------SFGDSPAHKGEVTGLAVD 502 (910)
T ss_pred ccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeec----------ccccCccccCceeEEEec
Confidence 0 00011122567899999999999999999999999999875321 001235899999999998
Q ss_pred C--CeEEEEeCCCeEEEeeCCCCcccc---------------------------------CCCceeEEEecCCCcceEEE
Q 041325 369 S--NLLFSGSSDNTIRIWRRSSSVTDH---------------------------------QKGYSCLAVLEGHRRPVKCL 413 (450)
Q Consensus 369 ~--~~l~s~~~dg~v~iwd~~~~~~~~---------------------------------~~~~~~~~~~~~h~~~v~~l 413 (450)
+ +.+++++.+|.+++||+....... ....+.++.+.+|...|+++
T Consensus 503 ~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~ 582 (910)
T KOG1539|consen 503 GTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDM 582 (910)
T ss_pred CCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeee
Confidence 4 589999999999999998754110 11223455678999999999
Q ss_pred EEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 414 TAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+|+||++ +|++++.|++|++||+
T Consensus 583 ~FS~Dgr-------------WlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 583 TFSPDGR-------------WLISASMDSTIRTWDL 605 (910)
T ss_pred EeCCCCc-------------EEEEeecCCcEEEEec
Confidence 9999999 9999999999999997
No 109
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=3.7e-27 Score=184.12 Aligned_cols=237 Identities=19% Similarity=0.328 Sum_probs=199.1
Q ss_pred EecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEee
Q 041325 123 ATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRR 200 (450)
Q Consensus 123 ~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (450)
..+|.+.|.+++|+-++ |++|+.|+++.+|+++....
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~----------------------------------------- 54 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF----------------------------------------- 54 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhh-----------------------------------------
Confidence 56899999999999655 99999999999999987621
Q ss_pred cceeeeecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEE
Q 041325 201 HKKCTWVHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIK 279 (450)
Q Consensus 201 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 279 (450)
.......+|.+.|-.++|+| +.+++++++.|.+|++||++.+++...+. ....-.-+.|+|+ +++++++..|..|.
T Consensus 55 ~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~--~~~eni~i~wsp~-g~~~~~~~kdD~it 131 (313)
T KOG1407|consen 55 RKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIE--TKGENINITWSPD-GEYIAVGNKDDRIT 131 (313)
T ss_pred hhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEee--ccCcceEEEEcCC-CCEEEEecCcccEE
Confidence 12233457999999999998 77899999999999999999999999887 4444456789984 55999999999999
Q ss_pred EEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCc
Q 041325 280 VWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT 359 (450)
Q Consensus 280 vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (450)
..|.++.+ .....+ ....+..++|+.++++++.....|.|.|......+++ ..+.+|.
T Consensus 132 ~id~r~~~--------~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv-------------~si~AH~ 189 (313)
T KOG1407|consen 132 FIDARTYK--------IVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPV-------------QSIKAHP 189 (313)
T ss_pred EEEecccc--------eeehhc-ccceeeeeeecCCCCEEEEecCCceEEEEeccccccc-------------cccccCC
Confidence 99997765 333332 4456788899988888888777899999998876644 7899999
Q ss_pred cceEEEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEE
Q 041325 360 KAILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYS 437 (450)
Q Consensus 360 ~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s 437 (450)
....|+.|++ +++|+|+.|-.+.+||++. ..|++.+..+.-+|..|.|+.+++ +||+
T Consensus 190 snCicI~f~p~GryfA~GsADAlvSLWD~~E--------LiC~R~isRldwpVRTlSFS~dg~-------------~lAS 248 (313)
T KOG1407|consen 190 SNCICIEFDPDGRYFATGSADALVSLWDVDE--------LICERCISRLDWPVRTLSFSHDGR-------------MLAS 248 (313)
T ss_pred cceEEEEECCCCceEeeccccceeeccChhH--------hhhheeeccccCceEEEEeccCcc-------------eeec
Confidence 9999999984 5999999999999999986 578899999999999999999999 9999
Q ss_pred cccCCcEEE
Q 041325 438 GSLDCEIKI 446 (450)
Q Consensus 438 ~~~Dg~i~i 446 (450)
||+|..|-|
T Consensus 249 aSEDh~IDI 257 (313)
T KOG1407|consen 249 ASEDHFIDI 257 (313)
T ss_pred cCccceEEe
Confidence 999998844
No 110
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=3.1e-28 Score=213.12 Aligned_cols=239 Identities=29% Similarity=0.481 Sum_probs=198.1
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS 219 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (450)
|++||.||.|++|++......... .....+..|.+.|+.++..
T Consensus 40 LfTgGRDg~i~~W~~~~d~~~~s~-------------------------------------~~~asme~HsDWVNDiiL~ 82 (735)
T KOG0308|consen 40 LFTGGRDGIIRLWSVTQDSNEPST-------------------------------------PYIASMEHHSDWVNDIILC 82 (735)
T ss_pred EEecCCCceEEEeccccccCCccc-------------------------------------chhhhhhhhHhHHhhHHhh
Confidence 999999999999999866321000 0122345799999999999
Q ss_pred cCCCEEEEEeCCCcEEEEecCCC--eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhh--hccccch
Q 041325 220 SDGSLLYSTSWDRTFKIWRTSDF--RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAAL--QVNKKHS 295 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~ 295 (450)
.+++.|++++.|-+|++|+...+ -+...+. .|.+.|.|+++......++++|+-|+.|.+||+..+.. .......
T Consensus 83 ~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir-~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~ 161 (735)
T KOG0308|consen 83 GNGKTLISASSDTTVKVWNAHKDNTFCMSTIR-THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNV 161 (735)
T ss_pred cCCCceEEecCCceEEEeecccCcchhHhhhh-cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccc
Confidence 99999999999999999999877 4667777 89999999999544666899999999999999987632 1111111
Q ss_pred hhhhHh-hcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeE
Q 041325 296 LVQTLE-KHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLL 372 (450)
Q Consensus 296 ~~~~~~-~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 372 (450)
....+. ++...|.+++.++.|..|++|+..+.|++||.++++.+ ..+.+|...|.++..+ |..+
T Consensus 162 t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~ki-------------mkLrGHTdNVr~ll~~dDGt~~ 228 (735)
T KOG0308|consen 162 TVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKI-------------MKLRGHTDNVRVLLVNDDGTRL 228 (735)
T ss_pred ccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccce-------------eeeeccccceEEEEEcCCCCeE
Confidence 222222 78899999999999999999999999999999998866 5777999999999987 5599
Q ss_pred EEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 373 FSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 373 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+++|.||+|++||+... +|+.++..|...|+++..+|+-. .+++|+.||.|..=||+
T Consensus 229 ls~sSDgtIrlWdLgqQ--------rCl~T~~vH~e~VWaL~~~~sf~-------------~vYsG~rd~~i~~Tdl~ 285 (735)
T KOG0308|consen 229 LSASSDGTIRLWDLGQQ--------RCLATYIVHKEGVWALQSSPSFT-------------HVYSGGRDGNIYRTDLR 285 (735)
T ss_pred eecCCCceEEeeecccc--------ceeeeEEeccCceEEEeeCCCcc-------------eEEecCCCCcEEecccC
Confidence 99999999999999863 89999999999999999999988 89999999999887764
No 111
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=6.3e-27 Score=195.45 Aligned_cols=259 Identities=19% Similarity=0.243 Sum_probs=208.3
Q ss_pred ccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCc
Q 041325 52 SFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDA 129 (450)
Q Consensus 52 ~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 129 (450)
......+..+..+.+.+|+ ||...|+.+.+ +...+++++.|-.|+||.......... ...|.++
T Consensus 240 d~~av~~d~~s~q~l~~~~--Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~------------~~~h~~~ 305 (506)
T KOG0289|consen 240 DKTAVLFDKPSNQILATLK--GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTS------------SRPHEEP 305 (506)
T ss_pred CCceEEEecchhhhhhhcc--CcceEEEEEEeccchhheeecCCcceEEeeccccccCccc------------ccccccc
Confidence 3345567778889999999 99999999999 688899999999999999876653333 6689999
Q ss_pred eEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeee
Q 041325 130 VKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWV 207 (450)
Q Consensus 130 v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (450)
|+.+..++.+ |++++.||+..+.|++++.+ +......
T Consensus 306 V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~----------------lt~vs~~------------------------- 344 (506)
T KOG0289|consen 306 VTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ----------------LTVVSDE------------------------- 344 (506)
T ss_pred ceeeeeccCCcEEEEecCCceEEEEEccCCcE----------------EEEEeec-------------------------
Confidence 9999998655 99999999999999999843 2111100
Q ss_pred cCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchh
Q 041325 208 HHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAA 287 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 287 (450)
...-.+++++|+|||.+|.+|..||.|+|||+.++..+..|. +|.++|..+.|+. ++.++++++.|+.|++||+|..+
T Consensus 345 ~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fp-ght~~vk~i~FsE-NGY~Lat~add~~V~lwDLRKl~ 422 (506)
T KOG0289|consen 345 TSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFP-GHTGPVKAISFSE-NGYWLATAADDGSVKLWDLRKLK 422 (506)
T ss_pred cccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCC-CCCCceeEEEecc-CceEEEEEecCCeEEEEEehhhc
Confidence 011258999999999999999999999999999999999998 7999999999995 44479999999999999998765
Q ss_pred hhccccchhhhhHhh-cccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEE
Q 041325 288 LQVNKKHSLVQTLEK-HKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLA 366 (450)
Q Consensus 288 ~~~~~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 366 (450)
...++.. ....+.++.|.+.|.+|+.++.|=.|++++-.+.+ +.....+..|.+..+++.
T Consensus 423 --------n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~-----------W~~~~~~~~~sg~st~v~ 483 (506)
T KOG0289|consen 423 --------NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKS-----------WTEIKELADHSGLSTGVR 483 (506)
T ss_pred --------ccceeeccccccceeEEEcCCCCeEEeecceeEEEEEeccccc-----------ceeeehhhhcccccceee
Confidence 3333322 22368999999999999999888777777755433 234456777888889999
Q ss_pred EeC--CeEEEEeCCCeEEEeeC
Q 041325 367 VVS--NLLFSGSSDNTIRIWRR 386 (450)
Q Consensus 367 ~~~--~~l~s~~~dg~v~iwd~ 386 (450)
|.. .++++++.|..++++.+
T Consensus 484 Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 484 FGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ecccceEEeeccchhheEEeec
Confidence 974 49999999999988754
No 112
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=1.1e-26 Score=182.18 Aligned_cols=232 Identities=19% Similarity=0.264 Sum_probs=192.0
Q ss_pred eEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEE
Q 041325 121 VVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQV 198 (450)
Q Consensus 121 ~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (450)
+.+.||..+++.+.|+.++ |++++.|.+..+|-..++ +.
T Consensus 4 i~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG----------------er----------------------- 44 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG----------------ER----------------------- 44 (327)
T ss_pred cccccCccccceEEecCCCcEEEEecCCCCceEEEecCC----------------ce-----------------------
Confidence 4578999999999999544 999999999999998777 23
Q ss_pred eecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEc-----
Q 041325 199 RRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGS----- 273 (450)
Q Consensus 199 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~----- 273 (450)
.-.+.+|.+.|.|++.+-+.+.+++|+.|.++++||+++|+++..++ ...+|..+.|++.+. +++...
T Consensus 45 ----lGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k--~~~~Vk~~~F~~~gn-~~l~~tD~~mg 117 (327)
T KOG0643|consen 45 ----LGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWK--TNSPVKRVDFSFGGN-LILASTDKQMG 117 (327)
T ss_pred ----eeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEee--cCCeeEEEeeccCCc-EEEEEehhhcC
Confidence 33455899999999999999999999999999999999999999997 778999999998544 444332
Q ss_pred CCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeec
Q 041325 274 ADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKG 353 (450)
Q Consensus 274 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 353 (450)
..+.|.++|++...... ....+...+..+.+.++.+-|.|-+++|++|..||.|.+||+++++.+ ..
T Consensus 118 ~~~~v~~fdi~~~~~~~-~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~------------v~ 184 (327)
T KOG0643|consen 118 YTCFVSVFDIRDDSSDI-DSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKEL------------VD 184 (327)
T ss_pred cceEEEEEEccCChhhh-cccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCcee------------ee
Confidence 34689999998544211 122245555667799999999999999999999999999999998654 25
Q ss_pred cccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 354 ALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 354 ~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
....|...|+.+.++++ ++++++.|.+-++||+.+ ..++..+. -..||++.+++|...
T Consensus 185 s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t--------l~v~Kty~-te~PvN~aaisP~~d 244 (327)
T KOG0643|consen 185 SDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRT--------LEVLKTYT-TERPVNTAAISPLLD 244 (327)
T ss_pred chhhhccccccccccCCcceEEecccCccceeeeccc--------eeeEEEee-ecccccceecccccc
Confidence 56678889999999866 999999999999999997 46666665 467999999999887
No 113
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.1e-26 Score=184.26 Aligned_cols=275 Identities=15% Similarity=0.258 Sum_probs=209.9
Q ss_pred cccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEE
Q 041325 12 RRNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLY 89 (450)
Q Consensus 12 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~ 89 (450)
.++.++.|++++.++...+.+.++ ++++...+..++++. .+.-.|..+.| ..+.++
T Consensus 15 ~~i~sl~fs~~G~~litss~dDsl--------------------~LYd~~~g~~~~ti~--skkyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 15 GKINSLDFSDDGLLLITSSEDDSL--------------------RLYDSLSGKQVKTIN--SKKYGVDLACFTHHSNTVI 72 (311)
T ss_pred CceeEEEecCCCCEEEEecCCCeE--------------------EEEEcCCCceeeEee--cccccccEEEEecCCceEE
Confidence 355666666666666554444344 567777888999998 66666777777 566666
Q ss_pred EeeC--CCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEecc
Q 041325 90 GGSS--NGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTS 165 (450)
Q Consensus 90 tgs~--dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~ 165 (450)
.++. |.+||.-++.+.+.++. +.||...|++|+.+|-. +++++.|++|++||++..++
T Consensus 73 ~sStk~d~tIryLsl~dNkylRY------------F~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~c------ 134 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDNKYLRY------------FPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKC------ 134 (311)
T ss_pred EccCCCCCceEEEEeecCceEEE------------cCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCC------
Confidence 6665 88999999999998887 88999999999999655 99999999999999997632
Q ss_pred CcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCC--e
Q 041325 166 GKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDF--R 243 (450)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~ 243 (450)
...+ +...-..++|+|+|-++|++...+.|++||++.. .
T Consensus 135 ----------qg~l-----------------------------~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkg 175 (311)
T KOG1446|consen 135 ----------QGLL-----------------------------NLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKG 175 (311)
T ss_pred ----------ceEE-----------------------------ecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCC
Confidence 1111 2223456889999999999998889999999864 2
Q ss_pred EEEEee--cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccc---eEEEEEcCCCCE
Q 041325 244 CLESVK--NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSA---VTALALSTDGTV 318 (450)
Q Consensus 244 ~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~---i~~l~~~~~~~~ 318 (450)
+...+. .......+.|.|+|+++ .++.++..+.+++.|.-++. ....+..+... --..+|+||+++
T Consensus 176 PF~tf~i~~~~~~ew~~l~FS~dGK-~iLlsT~~s~~~~lDAf~G~--------~~~tfs~~~~~~~~~~~a~ftPds~F 246 (311)
T KOG1446|consen 176 PFTTFSITDNDEAEWTDLEFSPDGK-SILLSTNASFIYLLDAFDGT--------VKSTFSGYPNAGNLPLSATFTPDSKF 246 (311)
T ss_pred CceeEccCCCCccceeeeEEcCCCC-EEEEEeCCCcEEEEEccCCc--------EeeeEeeccCCCCcceeEEECCCCcE
Confidence 333332 24467889999999655 77777888999999987776 44444443322 256789999999
Q ss_pred EEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccC-CccceEEEEEeCCeEEEEeCCCeEEEeeCC
Q 041325 319 LYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG-HTKAILCLAVVSNLLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 319 l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~ 387 (450)
+++|+.||+|.+|++++++.+ ..+.+ +..++.++.|+|.+..-++.+..+.+|=..
T Consensus 247 vl~gs~dg~i~vw~~~tg~~v-------------~~~~~~~~~~~~~~~fnP~~~mf~sa~s~l~fw~p~ 303 (311)
T KOG1446|consen 247 VLSGSDDGTIHVWNLETGKKV-------------AVLRGPNGGPVSCVRFNPRYAMFVSASSNLVFWLPD 303 (311)
T ss_pred EEEecCCCcEEEEEcCCCcEe-------------eEecCCCCCCccccccCCceeeeeecCceEEEEecc
Confidence 999999999999999998866 34444 678899999999988778888889999655
No 114
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=1.1e-27 Score=198.76 Aligned_cols=244 Identities=20% Similarity=0.278 Sum_probs=192.2
Q ss_pred eeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--
Q 041325 64 QCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 139 (450)
..+.+|. |..+.|+++.| +++.+++++.|+.+++|+++..+.... +.||.+.|+++.|.-..
T Consensus 210 ~~~~tLa--Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~T------------LsGHtdkVt~ak~~~~~~~ 275 (459)
T KOG0288|consen 210 ELISTLA--GSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHT------------LSGHTDKVTAAKFKLSHSR 275 (459)
T ss_pred hhhhhhh--ccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhh------------hcccccceeeehhhccccc
Confidence 4677887 99999999999 699999999999999999999887776 88999999999998444
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS 219 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (450)
+++|+.|.+|+.||+... .|..++- ....+.+|+.+
T Consensus 276 vVsgs~DRtiK~WDl~k~----------------~C~kt~l----------------------------~~S~cnDI~~~ 311 (459)
T KOG0288|consen 276 VVSGSADRTIKLWDLQKA----------------YCSKTVL----------------------------PGSQCNDIVCS 311 (459)
T ss_pred eeeccccchhhhhhhhhh----------------heecccc----------------------------ccccccceEec
Confidence 999999999999999987 3333332 12245555554
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhh
Q 041325 220 SDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQT 299 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 299 (450)
...+++|-.|++|++||.+...+..... ..+.|+++..+++ ...+++++.|..+.+.|+++.+.... ......
T Consensus 312 --~~~~~SgH~DkkvRfwD~Rs~~~~~sv~--~gg~vtSl~ls~~-g~~lLsssRDdtl~viDlRt~eI~~~--~sA~g~ 384 (459)
T KOG0288|consen 312 --ISDVISGHFDKKVRFWDIRSADKTRSVP--LGGRVTSLDLSMD-GLELLSSSRDDTLKVIDLRTKEIRQT--FSAEGF 384 (459)
T ss_pred --ceeeeecccccceEEEeccCCceeeEee--cCcceeeEeeccC-CeEEeeecCCCceeeeecccccEEEE--eecccc
Confidence 5568889999999999999999988886 4569999999984 44678889999999999988762111 111111
Q ss_pred HhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeC
Q 041325 300 LEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSS 377 (450)
Q Consensus 300 ~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~ 377 (450)
. .....+.+.|||++.|+++|+.||.|+||++.++++.. ..........|++++|+ |..|++++.
T Consensus 385 k--~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~-----------~l~~s~s~~aI~s~~W~~sG~~Llsadk 451 (459)
T KOG0288|consen 385 K--CASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEK-----------VLSLSTSNAAITSLSWNPSGSGLLSADK 451 (459)
T ss_pred c--cccccceeEECCCCceeeeccCCCcEEEEEccCceEEE-----------EeccCCCCcceEEEEEcCCCchhhcccC
Confidence 1 22347889999999999999999999999999988652 11222222369999998 569999999
Q ss_pred CCeEEEee
Q 041325 378 DNTIRIWR 385 (450)
Q Consensus 378 dg~v~iwd 385 (450)
++.+.+|.
T Consensus 452 ~~~v~lW~ 459 (459)
T KOG0288|consen 452 QKAVTLWT 459 (459)
T ss_pred CcceEecC
Confidence 99999993
No 115
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=7.9e-27 Score=199.03 Aligned_cols=260 Identities=18% Similarity=0.267 Sum_probs=193.6
Q ss_pred CcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCc
Q 041325 117 DHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANN 194 (450)
Q Consensus 117 ~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (450)
....+.+.+|+..|.++++.+.+ |++|+.|-+|++||+....... .....+.
T Consensus 157 ~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~------------~~fr~l~-------------- 210 (641)
T KOG0772|consen 157 GSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASM------------RSFRQLQ-------------- 210 (641)
T ss_pred ccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccc------------hhhhccC--------------
Confidence 34456688999999999999777 9999999999999998763210 0000110
Q ss_pred eEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEee-----------cccccceEEEEEee
Q 041325 195 YVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVK-----------NAHDDAINAIVVSK 263 (450)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~v~~~~~~~ 263 (450)
......|+++.|++.|..|++.+.....+|+|-...+.....+ .+|...+++.+|+|
T Consensus 211 ------------P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP 278 (641)
T KOG0772|consen 211 ------------PCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHP 278 (641)
T ss_pred ------------cccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeecccccc
Confidence 1234478999999999999999989999999987554443332 37888999999999
Q ss_pred cCCcEEEEEcCCCcEEEEeCcchhhhccccchhhh--hHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeee
Q 041325 264 SNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQ--TLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVD 341 (450)
Q Consensus 264 ~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~ 341 (450)
...+.+++++.||++|+||+.+.+.+ .+.+. ...+..-.++.++|+|||++||+|+.||.|.+|+..+...-
T Consensus 279 ~~k~~FlT~s~DgtlRiWdv~~~k~q----~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~-- 352 (641)
T KOG0772|consen 279 DNKEEFLTCSYDGTLRIWDVNNTKSQ----LQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVR-- 352 (641)
T ss_pred CcccceEEecCCCcEEEEecCCchhh----eeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccc--
Confidence 99999999999999999999876521 11111 11234567899999999999999999999999998543210
Q ss_pred CCCCCCceeeeccccCCcc--ceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCC--CcceEEEEE
Q 041325 342 GDDDSGHMVLKGALRGHTK--AILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGH--RRPVKCLTA 415 (450)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~--~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~ 415 (450)
.....-.+|.. .|+|+.|+ +++|++-+.|+++++||++.. .+++....+- ..+-+.++|
T Consensus 353 --------p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~-------kkpL~~~tgL~t~~~~tdc~F 417 (641)
T KOG0772|consen 353 --------PVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF-------KKPLNVRTGLPTPFPGTDCCF 417 (641)
T ss_pred --------cceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc-------ccchhhhcCCCccCCCCcccc
Confidence 11233456766 89999998 679999999999999999974 2344433332 235678899
Q ss_pred EecCCCCCCCCCCCCceEEEEEcc------cCCcEEEEE
Q 041325 416 VVDSDYSNRNSDHSSTSFLVYSGS------LDCEIKIWQ 448 (450)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~l~s~~------~Dg~i~iw~ 448 (450)
+|+.+ +|+||. ..|.+.+||
T Consensus 418 SPd~k-------------li~TGtS~~~~~~~g~L~f~d 443 (641)
T KOG0772|consen 418 SPDDK-------------LILTGTSAPNGMTAGTLFFFD 443 (641)
T ss_pred CCCce-------------EEEecccccCCCCCceEEEEe
Confidence 99998 899987 355677766
No 116
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.95 E-value=1e-26 Score=203.34 Aligned_cols=286 Identities=20% Similarity=0.272 Sum_probs=209.1
Q ss_pred CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEE
Q 041325 85 GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYY 162 (450)
Q Consensus 85 ~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~ 162 (450)
.+.|+.+.+||.|.++|......... .........|...|..+.|.+.. |++++.|.++++||+......
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr~e------e~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~-- 135 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFRLE------ERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLV-- 135 (720)
T ss_pred cceEEEecCCCceeeecchhhhcchh------hhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceee--
Confidence 67899999999999999876553311 11112356899999999999855 999999999999999987321
Q ss_pred eccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCC
Q 041325 163 STSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSD 241 (450)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~ 241 (450)
....+.+|.+.|.+++|.+ +...|++|+.||.|.|||++.
T Consensus 136 ---------------------------------------G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~ 176 (720)
T KOG0321|consen 136 ---------------------------------------GGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRC 176 (720)
T ss_pred ---------------------------------------cceeecccccccchhhhccCCCcceeeccCCCcEEEEEEec
Confidence 1113558999999999999 667899999999999999864
Q ss_pred Ce--------------------EEEEee------ccccc----ceEEEEEeecCCcEEEEEcC-CCcEEEEeCcchhhhc
Q 041325 242 FR--------------------CLESVK------NAHDD----AINAIVVSKSNDGFVYTGSA-DTKIKVWKKLRAALQV 290 (450)
Q Consensus 242 ~~--------------------~~~~~~------~~~~~----~v~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~ 290 (450)
.. ...... ..+.. .|+.+.|- ++..|++++. |+.|+|||++......
T Consensus 177 n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fk--De~tlaSaga~D~~iKVWDLRk~~~~~ 254 (720)
T KOG0321|consen 177 NGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFK--DESTLASAGAADSTIKVWDLRKNYTAY 254 (720)
T ss_pred cchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEe--ccceeeeccCCCcceEEEeeccccccc
Confidence 22 000000 02222 34455555 5557888877 9999999999876443
Q ss_pred cccchhhhhHhhc---ccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccc----eE
Q 041325 291 NKKHSLVQTLEKH---KSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA----IL 363 (450)
Q Consensus 291 ~~~~~~~~~~~~~---~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----v~ 363 (450)
.........+..+ ...+.++.....|.+|++.+.|+.|+.|++.+...- +...+.++... -.
T Consensus 255 r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~s-----------P~~~~sg~~~~sf~vks 323 (720)
T KOG0321|consen 255 RQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSIS-----------PVAEFSGKLNSSFYVKS 323 (720)
T ss_pred ccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcC-----------chhhccCcccceeeeee
Confidence 3333333333333 456788888888999999999999999999864321 22333333221 14
Q ss_pred EEEEeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCc
Q 041325 364 CLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCE 443 (450)
Q Consensus 364 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~ 443 (450)
++.+++.++++|+.|...++|.+.+. ......+.+|...|++++|.|.... -++|+++|..
T Consensus 324 ~lSpd~~~l~SgSsd~~ayiw~vs~~-------e~~~~~l~Ght~eVt~V~w~pS~~t------------~v~TcSdD~~ 384 (720)
T KOG0321|consen 324 ELSPDDCSLLSGSSDEQAYIWVVSSP-------EAPPALLLGHTREVTTVRWLPSATT------------PVATCSDDFR 384 (720)
T ss_pred ecCCCCceEeccCCCcceeeeeecCc-------cCChhhhhCcceEEEEEeeccccCC------------CceeeccCcc
Confidence 55666779999999999999999874 3556778899999999999987653 4888899999
Q ss_pred EEEEEe
Q 041325 444 IKIWQI 449 (450)
Q Consensus 444 i~iw~l 449 (450)
++||++
T Consensus 385 ~kiW~l 390 (720)
T KOG0321|consen 385 VKIWRL 390 (720)
T ss_pred eEEEec
Confidence 999987
No 117
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.95 E-value=4.4e-26 Score=201.24 Aligned_cols=236 Identities=24% Similarity=0.441 Sum_probs=200.8
Q ss_pred EEecCCCceEEEEEeCCe-EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEee
Q 041325 122 VATGNGDAVKSLVVLGDK-LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRR 200 (450)
Q Consensus 122 ~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (450)
.+.+|...|..+++.++. +++++.||++++|+-..++- +
T Consensus 9 ~l~gH~~DVr~v~~~~~~~i~s~sRd~t~~vw~~~~~~~----------------l------------------------ 48 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDGVCIISGSRDGTVKVWAKKGKQY----------------L------------------------ 48 (745)
T ss_pred EeccCccchheeEecCCeEEeecCCCCceeeeeccCccc----------------c------------------------
Confidence 477999999999998777 99999999999999866521 1
Q ss_pred cceeeeecCCCceEE-EEEcc-CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcE
Q 041325 201 HKKCTWVHHVDTVSA-LALSS-DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKI 278 (450)
Q Consensus 201 ~~~~~~~~~~~~v~~-~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 278 (450)
....+.+|.+-|.. +++-+ ++-.+++|+.|.+|.+|...+..++..+. +|+..|.++... .+..+++|+.|.++
T Consensus 49 -~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~Lk-gH~snVC~ls~~--~~~~~iSgSWD~Ta 124 (745)
T KOG0301|consen 49 -ETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLK-GHKSNVCSLSIG--EDGTLISGSWDSTA 124 (745)
T ss_pred -cceecccCcceeeccceeccccCcceEeecccceEEEEecCCCCchhhhh-ccccceeeeecC--CcCceEecccccce
Confidence 11122345566655 77775 55569999999999999999999999999 999999999977 45569999999999
Q ss_pred EEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC
Q 041325 279 KVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358 (450)
Q Consensus 279 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (450)
++|.... +...+.+|...|+.++.-|++ .+++|+.|..|++|.-.+ ....+.+|
T Consensus 125 kvW~~~~----------l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~---------------~l~tf~gH 178 (745)
T KOG0301|consen 125 KVWRIGE----------LVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGT---------------LLKTFSGH 178 (745)
T ss_pred EEecchh----------hhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCCc---------------hhhhhccc
Confidence 9997532 566789999999999999887 899999999999998743 34789999
Q ss_pred ccceEEEEEeCC-eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEE
Q 041325 359 TKAILCLAVVSN-LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYS 437 (450)
Q Consensus 359 ~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s 437 (450)
...|..+++-++ .+++++.||.|++|++.. +++..+.+|+.-|.++....++. .++|
T Consensus 179 tD~VRgL~vl~~~~flScsNDg~Ir~w~~~g---------e~l~~~~ghtn~vYsis~~~~~~-------------~Ivs 236 (745)
T KOG0301|consen 179 TDCVRGLAVLDDSHFLSCSNDGSIRLWDLDG---------EVLLEMHGHTNFVYSISMALSDG-------------LIVS 236 (745)
T ss_pred hhheeeeEEecCCCeEeecCCceEEEEeccC---------ceeeeeeccceEEEEEEecCCCC-------------eEEE
Confidence 999999999876 999999999999999953 78999999999999999777777 8999
Q ss_pred cccCCcEEEEEe
Q 041325 438 GSLDCEIKIWQI 449 (450)
Q Consensus 438 ~~~Dg~i~iw~l 449 (450)
+|+|++++||+.
T Consensus 237 ~gEDrtlriW~~ 248 (745)
T KOG0301|consen 237 TGEDRTLRIWKK 248 (745)
T ss_pred ecCCceEEEeec
Confidence 999999999985
No 118
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1e-24 Score=192.23 Aligned_cols=285 Identities=18% Similarity=0.253 Sum_probs=220.5
Q ss_pred CCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEec-CCCceEEEEEeCCe-EEEEeCCCeE
Q 041325 74 NSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATG-NGDAVKSLVVLGDK-LFSAHQDHKI 149 (450)
Q Consensus 74 h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~-l~s~~~dg~i 149 (450)
-..+|+||+| +.+.||.+-.||.|.||++...-+... .+.+ ....|.+|+|++.+ |++.+.+|.|
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~-----------vi~g~~drsIE~L~W~e~~RLFS~g~sg~i 92 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP-----------VIHGPEDRSIESLAWAEGGRLFSSGLSGSI 92 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE-----------EEecCCCCceeeEEEccCCeEEeecCCceE
Confidence 4678999999 678899999999999999987543332 2333 45689999999554 9999999999
Q ss_pred EEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe
Q 041325 150 RVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS 229 (450)
Q Consensus 150 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 229 (450)
.-||+.+.+.. ..+....+.|.+++.+|.++.++.|+
T Consensus 93 ~EwDl~~lk~~-------------------------------------------~~~d~~gg~IWsiai~p~~~~l~Igc 129 (691)
T KOG2048|consen 93 TEWDLHTLKQK-------------------------------------------YNIDSNGGAIWSIAINPENTILAIGC 129 (691)
T ss_pred EEEecccCcee-------------------------------------------EEecCCCcceeEEEeCCccceEEeec
Confidence 99999988431 22234566899999999999999999
Q ss_pred CCCcEEEEecCCCeEEEEee-cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceE
Q 041325 230 WDRTFKIWRTSDFRCLESVK-NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVT 308 (450)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 308 (450)
.||.+..++...++...... ...++.+.++.|+|+ ...+++|+.||.|++||...+.............-+....-|+
T Consensus 130 ddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~-~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVW 208 (691)
T KOG2048|consen 130 DDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPT-GTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVW 208 (691)
T ss_pred CCceEEEEecCCceEEEEeecccccceEEEEEecCC-ccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEE
Confidence 99988888887766543322 134689999999973 3369999999999999998766221111111111112345688
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeC
Q 041325 309 ALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRR 386 (450)
Q Consensus 309 ~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~ 386 (450)
++.|-.++ .|++|...|+|.+||...+..+ +....|...|.|++.. ++++++++.|+.|..|..
T Consensus 209 Sv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLi-------------qS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~ 274 (691)
T KOG2048|consen 209 SVLFLRDS-TIASGDSAGTVTFWDSIFGTLI-------------QSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSL 274 (691)
T ss_pred EEEEeecC-cEEEecCCceEEEEcccCcchh-------------hhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEe
Confidence 88888664 7999999999999999988755 7788899999999997 459999999999999988
Q ss_pred CCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEE
Q 041325 387 SSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKI 446 (450)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~i 446 (450)
... ...+........|...|.+++..++ .+++||.|..+.+
T Consensus 275 ~~~----~~~wv~~~~r~~h~hdvrs~av~~~---------------~l~sgG~d~~l~i 315 (691)
T KOG2048|consen 275 TTN----KSEWVINSRRDLHAHDVRSMAVIEN---------------ALISGGRDFTLAI 315 (691)
T ss_pred cCC----ccceeeeccccCCcccceeeeeecc---------------eEEecceeeEEEE
Confidence 765 2235566667889999999998877 6999999988765
No 119
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=1.3e-25 Score=179.25 Aligned_cols=241 Identities=19% Similarity=0.237 Sum_probs=179.2
Q ss_pred cCCCceEEEEEeCCe---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeec
Q 041325 125 GNGDAVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRH 201 (450)
Q Consensus 125 ~h~~~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (450)
...+.|.+|+|+|.. +++++.||+||+|+++.... .
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~-----------------------------------------~ 63 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQ-----------------------------------------L 63 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCc-----------------------------------------c
Confidence 456799999999833 66899999999999987411 0
Q ss_pred ceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCC-cEEEEEcCCCcEEE
Q 041325 202 KKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSND-GFVYTGSADTKIKV 280 (450)
Q Consensus 202 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~v 280 (450)
.......|.++|.+++|+.+|..+++|+-|+.+++||+.+++.. .+. .|..+|..+.|.+... ..|++|+.|++|+.
T Consensus 64 ~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~-~v~-~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKf 141 (347)
T KOG0647|consen 64 VPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVS-QVA-AHDAPVKTCHWVPGMNYQCLVTGSWDKTLKF 141 (347)
T ss_pred cchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCee-eee-ecccceeEEEEecCCCcceeEecccccceee
Confidence 00122358999999999999999999999999999999999554 444 6999999999986333 25899999999999
Q ss_pred EeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCcc
Q 041325 281 WKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK 360 (450)
Q Consensus 281 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (450)
||.+... ++..+. ..+.+.++.. -..+++++..+..|.+|+++++... .......-.-
T Consensus 142 WD~R~~~--------pv~t~~-LPeRvYa~Dv--~~pm~vVata~r~i~vynL~n~~te-----------~k~~~SpLk~ 199 (347)
T KOG0647|consen 142 WDTRSSN--------PVATLQ-LPERVYAADV--LYPMAVVATAERHIAVYNLENPPTE-----------FKRIESPLKW 199 (347)
T ss_pred cccCCCC--------eeeeee-ccceeeehhc--cCceeEEEecCCcEEEEEcCCCcch-----------hhhhcCcccc
Confidence 9997655 555544 4456666655 3468888999999999999865422 1111111223
Q ss_pred ceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCC---------cceEEEEEEecCCCCCCCCCCC
Q 041325 361 AILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHR---------RPVKCLTAVVDSDYSNRNSDHS 429 (450)
Q Consensus 361 ~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~---------~~v~~l~~~~~~~~~~~~~~~~ 429 (450)
.+.|++.. .+..+.|+.+|++.|..+..+.. +.-..++.|. -.|++|+|+|...
T Consensus 200 Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~------~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hg--------- 264 (347)
T KOG0647|consen 200 QTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP------KDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHG--------- 264 (347)
T ss_pred eeeEEEEEecCCceEeeeecceEEEEecCCCCc------cCceeEEEeccCCCCCCceEEecceEeecccc---------
Confidence 35566654 45669999999999999887422 2222333343 3689999999888
Q ss_pred CceEEEEEcccCCcEEEEEe
Q 041325 430 STSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 430 ~~~~~l~s~~~Dg~i~iw~l 449 (450)
.|+|+|.||++.+||=
T Consensus 265 ----tlvTaGsDGtf~FWDk 280 (347)
T KOG0647|consen 265 ----TLVTAGSDGTFSFWDK 280 (347)
T ss_pred ----eEEEecCCceEEEecc
Confidence 8999999999999983
No 120
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=5.6e-26 Score=184.33 Aligned_cols=291 Identities=14% Similarity=0.268 Sum_probs=208.6
Q ss_pred CEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC----CeEEEEeCCCeEEEEEcCCCceeE
Q 041325 86 KLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG----DKLFSAHQDHKIRVWKIDNNTSAY 161 (450)
Q Consensus 86 ~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~~~dg~i~iw~~~~~~~~~ 161 (450)
..+|++-..|.|++||..+++.... +.++...++.++|.. ..+.+|+.||+|++||++.....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~- 107 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEE------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES- 107 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhhe------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh-
Confidence 6788899999999999999887776 778888888898864 44999999999999999987321
Q ss_pred EeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCC-CceEEEEEccCCCEEEEEe----CCCcEEE
Q 041325 162 YSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHV-DTVSALALSSDGSLLYSTS----WDRTFKI 236 (450)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~----~dg~i~i 236 (450)
....+..+. .+..+++.+.+++.+++|. .+-.|.+
T Consensus 108 ----------------------------------------a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~l 147 (376)
T KOG1188|consen 108 ----------------------------------------ARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVL 147 (376)
T ss_pred ----------------------------------------hheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEE
Confidence 111122233 4667788777888888875 4678999
Q ss_pred EecCCCeE-EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCC
Q 041325 237 WRTSDFRC-LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTD 315 (450)
Q Consensus 237 wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 315 (450)
||++..+. +..+...|...|+++.|+|.+.++|++|+.||.|.+||+.... +...+...+ .+.+.|.++.|..+
T Consensus 148 wDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~----EeDaL~~vi-N~~sSI~~igw~~~ 222 (376)
T KOG1188|consen 148 WDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN----EEDALLHVI-NHGSSIHLIGWLSK 222 (376)
T ss_pred EEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc----chhhHHHhh-cccceeeeeeeecC
Confidence 99998877 7788789999999999999999999999999999999997653 333344444 57888999999987
Q ss_pred C-CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe-CCeEEEEeC-CCeEEEeeCCCCccc
Q 041325 316 G-TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV-SNLLFSGSS-DNTIRIWRRSSSVTD 392 (450)
Q Consensus 316 ~-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~-dg~v~iwd~~~~~~~ 392 (450)
+ +.|.+-+..+...+|+++.+.....++.+............-..-|.+.... .+..+.++. -|...++-+.....
T Consensus 223 ~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s- 301 (376)
T KOG1188|consen 223 KYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSS- 301 (376)
T ss_pred CcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeeccc-
Confidence 6 4588889999999999998875433333221111111111222223333222 234444443 56666665542110
Q ss_pred cCCCceeEEEecC-CCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 393 HQKGYSCLAVLEG-HRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 393 ~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
.........+++ |..-|.++.|...+. ++.|||.||.+.+|..
T Consensus 302 -~~~~~~~a~l~g~~~eiVR~i~~~~~~~-------------~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 302 -GSLLTEPAILQGGHEEIVRDILFDVKND-------------VLYTGGEDGLLQAWKV 345 (376)
T ss_pred -ccccCccccccCCcHHHHHHHhhhcccc-------------eeeccCCCceEEEEec
Confidence 222344555665 777888998887777 9999999999999984
No 121
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.95 E-value=2.9e-25 Score=199.98 Aligned_cols=338 Identities=19% Similarity=0.263 Sum_probs=248.4
Q ss_pred CccccCCCCCccceeeeEEeecCCCcceEEEEE--eCC-EEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCC
Q 041325 51 SSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGK-LLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNG 127 (450)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~-~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~ 127 (450)
.+..+.+...+..+.+.+|+ ...+.|+.++| ||+ .+|+|+..|.+-+||++..+.... ....|.
T Consensus 222 ~~G~ViifNlK~dkil~sFk--~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v-----------~~nah~ 288 (910)
T KOG1539|consen 222 ENGTVIIFNLKFDKILMSFK--QDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINV-----------TRNAHY 288 (910)
T ss_pred cCceEEEEEcccCcEEEEEE--ccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeee-----------eecccc
Confidence 34566777888889999998 33599999999 765 566777789999999998886655 344788
Q ss_pred CceEEEEEeCCe--EEEEeCCCeEEEEEcCCCcee--E-EeccCcccccceeeeeec--------cCCCc----------
Q 041325 128 DAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSA--Y-YSTSGKLKNKYYERIATL--------PTLND---------- 184 (450)
Q Consensus 128 ~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~--~-~~~~~~~~~~~~~~~~~~--------~~~~~---------- 184 (450)
+.|....|.+.. +++++.|+.+++|=.+++... . ....+...+. .++... +...+
T Consensus 289 ~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp--~~irfy~~~g~~ilsa~~Drt~r~fs~~~ 366 (910)
T KOG1539|consen 289 GSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPP--SCIRFYGSQGHFILSAKQDRTLRSFSVIS 366 (910)
T ss_pred CCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCc--hheeeeccCcEEEEecccCcchhhhhhhH
Confidence 899999999877 899999999999977744321 0 0000000000 000000 00000
Q ss_pred ----------------------------------------------ceeEeeecCceEEEeecceeee----ecC-----
Q 041325 185 ----------------------------------------------RFTKCFLANNYVQVRRHKKCTW----VHH----- 209 (450)
Q Consensus 185 ----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~----~~~----- 209 (450)
....+-........|+...... ..+
T Consensus 367 e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~ 446 (910)
T KOG1539|consen 367 ESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKK 446 (910)
T ss_pred HHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccc
Confidence 0000001111111122111111 122
Q ss_pred -CCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEe--ecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcch
Q 041325 210 -VDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESV--KNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 210 -~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 286 (450)
...+++++.++.|++.+.|+..|.|-+|++.+|.....+ ...|..+|..++... -+..+++++.+|.+.+||....
T Consensus 447 ~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k 525 (910)
T KOG1539|consen 447 DDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKK 525 (910)
T ss_pred cCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCc
Confidence 257889999999999999999999999999999888888 247999999999985 3447999999999999998654
Q ss_pred hhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEE
Q 041325 287 ALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLA 366 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 366 (450)
. ++..+. -...+..+.++.....++.+..|-.|+++|..+.+.+ +.+.+|...|++++
T Consensus 526 ~--------l~~~l~-l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvv-------------R~f~gh~nritd~~ 583 (910)
T KOG1539|consen 526 V--------LKKSLR-LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVV-------------REFWGHGNRITDMT 583 (910)
T ss_pred c--------eeeeec-cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhh-------------HHhhccccceeeeE
Confidence 4 444443 4567888999988899999999999999999987644 88999999999999
Q ss_pred EeC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccC-Cc
Q 041325 367 VVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLD-CE 443 (450)
Q Consensus 367 ~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~D-g~ 443 (450)
|++ ++|++++.|++|++||+.++ .++..+. -..+++++.|+|+++ +|||...| .-
T Consensus 584 FS~DgrWlisasmD~tIr~wDlpt~--------~lID~~~-vd~~~~sls~SPngD-------------~LAT~Hvd~~g 641 (910)
T KOG1539|consen 584 FSPDGRWLISASMDSTIRTWDLPTG--------TLIDGLL-VDSPCTSLSFSPNGD-------------FLATVHVDQNG 641 (910)
T ss_pred eCCCCcEEEEeecCCcEEEEeccCc--------ceeeeEe-cCCcceeeEECCCCC-------------EEEEEEecCce
Confidence 985 49999999999999999985 4555443 467899999999999 99999998 66
Q ss_pred EEEEE
Q 041325 444 IKIWQ 448 (450)
Q Consensus 444 i~iw~ 448 (450)
|++|-
T Consensus 642 IylWs 646 (910)
T KOG1539|consen 642 IYLWS 646 (910)
T ss_pred EEEEE
Confidence 99995
No 122
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=3.5e-26 Score=183.79 Aligned_cols=271 Identities=19% Similarity=0.339 Sum_probs=215.1
Q ss_pred cccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCC------CCC---------ce-eeee--
Q 041325 53 FRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRD------PNN---------YV-NITS-- 112 (450)
Q Consensus 53 ~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~------~~~---------~~-~~~~-- 112 (450)
-...+++..++.|+.++. ||.+.|+++.| .+.+++|++.|++-.||... ... .. ...+
T Consensus 170 hTA~iWs~Esg~CL~~Y~--GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~ 247 (481)
T KOG0300|consen 170 HTARIWSLESGACLATYT--GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHN 247 (481)
T ss_pred cceeEEeeccccceeeec--ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccc
Confidence 334578889999999999 99999999999 68999999999999999731 100 00 0000
Q ss_pred c--------C--CCCcceeEEecCCCceEEEEEeC--CeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeecc
Q 041325 113 T--------D--VGDHANVVATGNGDAVKSLVVLG--DKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLP 180 (450)
Q Consensus 113 ~--------~--~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (450)
. . .-..+...+.+|.+.|.+..|.. +.+++++.|.+..+||++++.
T Consensus 248 ~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge---------------------- 305 (481)
T KOG0300|consen 248 RDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGE---------------------- 305 (481)
T ss_pred cccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCc----------------------
Confidence 0 0 01124566889999999999974 449999999999999999983
Q ss_pred CCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCe-EEEEeecccccceEEE
Q 041325 181 TLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFR-CLESVKNAHDDAINAI 259 (450)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~ 259 (450)
....+.+|....+.++-+|..+++++.+.|.+.++||++..- .+..|+ +|...|+++
T Consensus 306 ---------------------~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ-GHtdtVTS~ 363 (481)
T KOG0300|consen 306 ---------------------VVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ-GHTDTVTSV 363 (481)
T ss_pred ---------------------eeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeec-ccccceeEE
Confidence 223445799999999999999999999999999999998543 455566 999999999
Q ss_pred EEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCcee
Q 041325 260 VVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYI 339 (450)
Q Consensus 260 ~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~ 339 (450)
.|. .+..+++|+.|.+|++||+++.. .++.++. ..++++.++.+..+..|+.-..+..|++||+...+..
T Consensus 364 vF~--~dd~vVSgSDDrTvKvWdLrNMR-------splATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rla 433 (481)
T KOG0300|consen 364 VFN--TDDRVVSGSDDRTVKVWDLRNMR-------SPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLA 433 (481)
T ss_pred EEe--cCCceeecCCCceEEEeeecccc-------Ccceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccc
Confidence 999 45579999999999999998754 1344443 5678999999988889999999999999999854422
Q ss_pred eeCCCCCCceeeeccccCCccceEEEEEeCC----eEEEEeCCCeEEEeeCCC
Q 041325 340 VDGDDDSGHMVLKGALRGHTKAILCLAVVSN----LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~----~l~s~~~dg~v~iwd~~~ 388 (450)
..+...-.+|...|+|.+|..+ -|++++.|..+.-|+++.
T Consensus 434 ---------RlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 434 ---------RLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred ---------cCCcccccccceeeeeeeccccCcccccccccccceeeeeEecc
Confidence 2234466789999999999854 788999999999999875
No 123
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.94 E-value=3.9e-25 Score=186.11 Aligned_cols=305 Identities=18% Similarity=0.230 Sum_probs=215.8
Q ss_pred ceeeeEEeecCCCcceEEEEE----eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC
Q 041325 63 HQCSATLKVKGNSSYIPSLAI----AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD 138 (450)
Q Consensus 63 ~~~~~~l~~~~h~~~v~~~~~----d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 138 (450)
.......+ -|..+|++++| +.+++|+|..-|+|-+||+.+.+. .......+..|.++|.+|.|+|.
T Consensus 176 ~~~~~v~k--v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~--------d~d~v~~f~~hs~~Vs~l~F~P~ 245 (498)
T KOG4328|consen 176 YRILNVAK--VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEK--------DKDGVYLFTPHSGPVSGLKFSPA 245 (498)
T ss_pred ceecceeE--ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCC--------ccCceEEeccCCccccceEecCC
Confidence 34455555 78999999999 358999999999999999973331 12234567899999999999976
Q ss_pred e---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEE
Q 041325 139 K---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSA 215 (450)
Q Consensus 139 ~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 215 (450)
. +++.+.||+|++-|++..... .+... .........
T Consensus 246 n~s~i~ssSyDGtiR~~D~~~~i~e--------------~v~s~---------------------------~~d~~~fs~ 284 (498)
T KOG4328|consen 246 NTSQIYSSSYDGTIRLQDFEGNISE--------------EVLSL---------------------------DTDNIWFSS 284 (498)
T ss_pred ChhheeeeccCceeeeeeecchhhH--------------HHhhc---------------------------Cccceeeee
Confidence 6 999999999999999987321 11110 012235677
Q ss_pred EEEccCCCEEEEEeCCCcEEEEecCCCeE-EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccc
Q 041325 216 LALSSDGSLLYSTSWDRTFKIWRTSDFRC-LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKH 294 (450)
Q Consensus 216 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 294 (450)
+.|+.+...++.+..=|...+||.++... ...+. .|+..|.+|+++|....++++++.|++++|||++.-. ...
T Consensus 285 ~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~-lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~----~K~ 359 (498)
T KOG4328|consen 285 LDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLR-LHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLR----GKA 359 (498)
T ss_pred ccccCCCccEEEeecccceEEEEeecCCccchhhh-hhhcccceeecCCCCchheeecccCcceeeeehhhhc----CCC
Confidence 88888777788888778999999998766 44444 7888999999999999899999999999999998754 222
Q ss_pred hhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eE
Q 041325 295 SLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LL 372 (450)
Q Consensus 295 ~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l 372 (450)
.+.-....|...|.+..|||.+-.|++.+.|..|+|||.. ++-....+... ..-....+..-......|+++ ++
T Consensus 360 sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss---~~sa~~~p~~~-I~Hn~~t~RwlT~fKA~W~P~~~li 435 (498)
T KOG4328|consen 360 SPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS---CISAKDEPLGT-IPHNNRTGRWLTPFKAAWDPDYNLI 435 (498)
T ss_pred CcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc---cccccCCccce-eeccCcccccccchhheeCCCccEE
Confidence 1233334699999999999988789999999999999984 11000000000 000111111122344567755 88
Q ss_pred EEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCc-ceEEE-EEEecCCCCCCCCCCCCceEEEEEc-ccCCcEEEEE
Q 041325 373 FSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRR-PVKCL-TAVVDSDYSNRNSDHSSTSFLVYSG-SLDCEIKIWQ 448 (450)
Q Consensus 373 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~-~v~~l-~~~~~~~~~~~~~~~~~~~~~l~s~-~~Dg~i~iw~ 448 (450)
++|-.-..|-|+|-+.+ +.+..+..... .|.++ .|+|-+. .+++| +.-|.|+||-
T Consensus 436 ~vg~~~r~IDv~~~~~~--------q~v~el~~P~~~tI~~vn~~HP~~~-------------~~~aG~~s~Gki~vft 493 (498)
T KOG4328|consen 436 VVGRYPRPIDVFDGNGG--------QMVCELHDPESSTIPSVNEFHPMRD-------------TLAAGGNSSGKIYVFT 493 (498)
T ss_pred EEeccCcceeEEcCCCC--------EEeeeccCccccccccceeeccccc-------------ceeccCCccceEEEEe
Confidence 99999999999997754 55555544333 45544 7888776 45554 4678888885
No 124
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.2e-25 Score=188.08 Aligned_cols=281 Identities=20% Similarity=0.318 Sum_probs=207.7
Q ss_pred EEEeeCC-CcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEe-CCCeEEEEEcCCCceeEEecc
Q 041325 88 LYGGSSN-GEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAH-QDHKIRVWKIDNNTSAYYSTS 165 (450)
Q Consensus 88 l~tgs~d-g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~-~dg~i~iw~~~~~~~~~~~~~ 165 (450)
+.+++.| ..+.+||+.++........... ..+|. .-+..+.+++++. ....|.+|.+......
T Consensus 10 ~sssS~d~~~~~~~dl~TGt~~~~ykg~~~------a~~~s----l~~l~~~yllsaq~~rp~l~vw~i~k~~~~----- 74 (476)
T KOG0646|consen 10 CSSSSFDPINCIVWDLRTGTSLLQYKGSYL------AQAAS----LTALNNEYLLSAQLKRPLLHVWEILKKDQV----- 74 (476)
T ss_pred EeccCCCCcceeEEecCCCceeEEecCccc------ccchh----hhhhchhheeeecccCccccccccCchhhh-----
Confidence 3344555 4599999999986655322100 11111 1112344555554 4557899998766321
Q ss_pred CcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEE
Q 041325 166 GKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCL 245 (450)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 245 (450)
. ...--.++|.+++-+|+|.+++.|+..|.|++|.+.+|..+
T Consensus 75 -----------~---------------------------q~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL 116 (476)
T KOG0646|consen 75 -----------V---------------------------QYIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILL 116 (476)
T ss_pred -----------h---------------------------hhcccccceeeeecCCCceEEEeecccCcEEEEEeccccHH
Confidence 0 00113458999999999999999989999999999999999
Q ss_pred EEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc-ccchhhhhHhhcccceEEEEEcCC--CCEEEEe
Q 041325 246 ESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN-KKHSLVQTLEKHKSAVTALALSTD--GTVLYSG 322 (450)
Q Consensus 246 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~--~~~l~~g 322 (450)
..+. .|-..|+++.|+. ++.+|++|+.||.|.+|++..--.... ....+...+..|.-+|+.+...+. ..+|+++
T Consensus 117 ~v~~-aHYQ~ITcL~fs~-dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~Ta 194 (476)
T KOG0646|consen 117 NVLS-AHYQSITCLKFSD-DGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTA 194 (476)
T ss_pred HHHH-hhccceeEEEEeC-CCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEe
Confidence 9886 9999999999996 444899999999999998754321111 245577888999999999998764 3589999
Q ss_pred eCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEEeeCCCCcccc-------
Q 041325 323 ACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTDH------- 393 (450)
Q Consensus 323 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~------- 393 (450)
+.|.++++||+..+..+. . ......+.+++.++ ..++.|+.+|.|.+.++.......
T Consensus 195 S~D~t~k~wdlS~g~LLl-------------t-i~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~ 260 (476)
T KOG0646|consen 195 SEDRTIKLWDLSLGVLLL-------------T-ITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKG 260 (476)
T ss_pred cCCceEEEEEeccceeeE-------------E-EecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccc
Confidence 999999999999987662 1 12345678888874 599999999999998876543111
Q ss_pred -CCCceeEEEecCCCc--ceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 394 -QKGYSCLAVLEGHRR--PVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 394 -~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
.........+.+|.+ .|+|++.+.|+. +|++|+.||.|+|||+.
T Consensus 261 ~~~~~t~~~~~~Gh~~~~~ITcLais~Dgt-------------lLlSGd~dg~VcvWdi~ 307 (476)
T KOG0646|consen 261 RHEENTQINVLVGHENESAITCLAISTDGT-------------LLLSGDEDGKVCVWDIY 307 (476)
T ss_pred cccccceeeeeccccCCcceeEEEEecCcc-------------EEEeeCCCCCEEEEecc
Confidence 122345667889988 999999999999 99999999999999973
No 125
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.8e-27 Score=210.77 Aligned_cols=241 Identities=23% Similarity=0.420 Sum_probs=205.2
Q ss_pred EEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe--CCeEEEEeCCCeEEEEEcCCCceeEEecc
Q 041325 88 LYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL--GDKLFSAHQDHKIRVWKIDNNTSAYYSTS 165 (450)
Q Consensus 88 l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~ 165 (450)
++....+-.+++|+... +..|...|.++..- ...+++|+.|-.+-+|.+....
T Consensus 7 ~m~~~~~t~Lr~~~~~~------------------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~------- 61 (825)
T KOG0267|consen 7 LMKTKRATKLRVWDTRE------------------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN------- 61 (825)
T ss_pred cceeeeeeccccccchh------------------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCc-------
Confidence 34445556677887654 33677788887763 2339999999999999987651
Q ss_pred CcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEE
Q 041325 166 GKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCL 245 (450)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 245 (450)
....+.+|..+|.++.|++...+|++|+.+|+|++||+++.+.+
T Consensus 62 ------------------------------------~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~v 105 (825)
T KOG0267|consen 62 ------------------------------------AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIV 105 (825)
T ss_pred ------------------------------------hhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhh
Confidence 12235589999999999999999999999999999999999999
Q ss_pred EEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC
Q 041325 246 ESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD 325 (450)
Q Consensus 246 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d 325 (450)
+.+. +|...+.++.|+|... +.+.|+.|+.+.+||.+... +...+.+|...+..+.|+|+|++++.|++|
T Consensus 106 rtLt-gh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~G--------c~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed 175 (825)
T KOG0267|consen 106 RTLT-GHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKKG--------CSHTYKSHTRVVDVLRLSPDGRWVASGGED 175 (825)
T ss_pred hhhh-ccccCcceeeeccceE-EeccccccccceehhhhccC--------ceeeecCCcceeEEEeecCCCceeeccCCc
Confidence 9888 8999999999999544 78999999999999997655 778888899999999999999999999999
Q ss_pred CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEe
Q 041325 326 RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVL 403 (450)
Q Consensus 326 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 403 (450)
..++|||+..|+.+ ..+..|...+.++.|++. ++++|+.|++|++||+++ ++.+...
T Consensus 176 ~tvki~d~~agk~~-------------~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dlet--------fe~I~s~ 234 (825)
T KOG0267|consen 176 NTVKIWDLTAGKLS-------------KEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLET--------FEVISSG 234 (825)
T ss_pred ceeeeecccccccc-------------cccccccccccccccCchhhhhccCCCCceeeeeccce--------eEEeecc
Confidence 99999999988755 688899999999999865 889999999999999996 4677777
Q ss_pred cCCCcceEEEEEEecCC
Q 041325 404 EGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 404 ~~h~~~v~~l~~~~~~~ 420 (450)
+.....|.+++|.+++.
T Consensus 235 ~~~~~~v~~~~fn~~~~ 251 (825)
T KOG0267|consen 235 KPETDGVRSLAFNPDGK 251 (825)
T ss_pred CCccCCceeeeecCCce
Confidence 77788999999999998
No 126
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=3.2e-26 Score=183.38 Aligned_cols=298 Identities=17% Similarity=0.290 Sum_probs=219.5
Q ss_pred cCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCc-cceeeeEEeecCCCcceEEEEE--eCCEEEE
Q 041325 14 NKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAAS-EHQCSATLKVKGNSSYIPSLAI--AGKLLYG 90 (450)
Q Consensus 14 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~h~~~v~~~~~--d~~~l~t 90 (450)
-+-+.|+|++...+.++.+.++....... .++-...........+ ....+++|- .|.+.|+++.| ....|++
T Consensus 115 cR~aafs~DG~lvATGsaD~SIKildver---mlaks~~~em~~~~~qa~hPvIRTlY--DH~devn~l~FHPre~ILiS 189 (430)
T KOG0640|consen 115 CRAAAFSPDGSLVATGSADASIKILDVER---MLAKSKPKEMISGDTQARHPVIRTLY--DHVDEVNDLDFHPRETILIS 189 (430)
T ss_pred eeeeeeCCCCcEEEccCCcceEEEeehhh---hhhhcchhhhccCCcccCCceEeehh--hccCcccceeecchhheEEe
Confidence 35678999999999999999887532211 1111111111111111 135678888 99999999999 6899999
Q ss_pred eeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcc
Q 041325 91 GSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKL 168 (450)
Q Consensus 91 gs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 168 (450)
|+.|++|+++|+......+..+ ......+|.++.|+|.+ |+.|..-.++++||+++-+
T Consensus 190 ~srD~tvKlFDfsK~saKrA~K----------~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q---------- 249 (430)
T KOG0640|consen 190 GSRDNTVKLFDFSKTSAKRAFK----------VFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ---------- 249 (430)
T ss_pred ccCCCeEEEEecccHHHHHHHH----------HhhccceeeeEeecCCCceEEEecCCCceeEEecccee----------
Confidence 9999999999987654332211 12344689999999776 8888888999999999873
Q ss_pred cccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEe
Q 041325 169 KNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESV 248 (450)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 248 (450)
|....... ..|.+.|+++.+++.+++.++++.||.|++||--+++|+..+
T Consensus 250 ------cfvsanPd------------------------~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~ 299 (430)
T KOG0640|consen 250 ------CFVSANPD------------------------DQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTI 299 (430)
T ss_pred ------EeeecCcc------------------------cccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHH
Confidence 33222211 159999999999999999999999999999999999999999
Q ss_pred eccccc-ceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhc-----ccceEEEEEcCCCCEEEEe
Q 041325 249 KNAHDD-AINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKH-----KSAVTALALSTDGTVLYSG 322 (450)
Q Consensus 249 ~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-----~~~i~~l~~~~~~~~l~~g 322 (450)
...|.+ .|.+..|.. +..++++.+.|..+++|.+.++. .+..+.+. ..--+...|+....+++.-
T Consensus 300 ~~AH~gsevcSa~Ftk-n~kyiLsSG~DS~vkLWEi~t~R--------~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~p 370 (430)
T KOG0640|consen 300 GNAHGGSEVCSAVFTK-NGKYILSSGKDSTVKLWEISTGR--------MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFP 370 (430)
T ss_pred HhhcCCceeeeEEEcc-CCeEEeecCCcceeeeeeecCCc--------eEEEEecCCcccchhhhhhhhhcCccceEEcc
Confidence 877765 678888887 45589999999999999998876 33332221 1112334577667777665
Q ss_pred eC-CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCC
Q 041325 323 AC-DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 323 ~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~ 387 (450)
.+ .+.+.-||.++.... .....+|++.+..+.-++. -+++|+.|..+|+|--+
T Consensus 371 DEas~slcsWdaRtadr~------------~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 371 DEASNSLCSWDARTADRV------------ALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred ccccCceeeccccchhhh------------hhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 54 577999999987543 1334689999999988865 89999999999999654
No 127
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=7.4e-25 Score=175.55 Aligned_cols=238 Identities=19% Similarity=0.255 Sum_probs=180.7
Q ss_pred CCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecce
Q 041325 126 NGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKK 203 (450)
Q Consensus 126 h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (450)
....|.++.|++.. |++++.||++++||+..... .
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l----------------~--------------------------- 48 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL----------------K--------------------------- 48 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh----------------h---------------------------
Confidence 35689999999554 88888999999999987621 0
Q ss_pred eeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeC
Q 041325 204 CTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKK 283 (450)
Q Consensus 204 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 283 (450)
....|..++.+++|.++ ..+++|+.||.|+.+|+.++...... .|..++.+|...+ ..+.+++|+.|+.|++||.
T Consensus 49 -~~~~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~~ig--th~~~i~ci~~~~-~~~~vIsgsWD~~ik~wD~ 123 (323)
T KOG1036|consen 49 -LKFKHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNEDQIG--THDEGIRCIEYSY-EVGCVISGSWDKTIKFWDP 123 (323)
T ss_pred -hheecCCceeeeeccCC-ceEEEeccCceEEEEEecCCcceeec--cCCCceEEEEeec-cCCeEEEcccCccEEEEec
Confidence 11148889999999874 46899999999999999988766555 5999999999997 6669999999999999999
Q ss_pred cchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceE
Q 041325 284 LRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAIL 363 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 363 (450)
+... ....+. ....|.++.. .|+.|++|+.|..+.+||+++..... ...-..-...+.
T Consensus 124 R~~~--------~~~~~d-~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~-----------q~reS~lkyqtR 181 (323)
T KOG1036|consen 124 RNKV--------VVGTFD-QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPF-----------QRRESSLKYQTR 181 (323)
T ss_pred cccc--------cccccc-cCceEEEEec--cCCEEEEeecCceEEEEEcccccchh-----------hhccccceeEEE
Confidence 7633 333333 3347888777 47899999999999999999865331 112222345567
Q ss_pred EEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCC---------cceEEEEEEecCCCCCCCCCCCCce
Q 041325 364 CLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHR---------RPVKCLTAVVDSDYSNRNSDHSSTS 432 (450)
Q Consensus 364 ~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~---------~~v~~l~~~~~~~~~~~~~~~~~~~ 432 (450)
|++..+ .-.++++-||+|.+=.++.... .......++.|. -+|++|+|+|-..
T Consensus 182 ~v~~~pn~eGy~~sSieGRVavE~~d~s~~----~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~------------ 245 (323)
T KOG1036|consen 182 CVALVPNGEGYVVSSIEGRVAVEYFDDSEE----AQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG------------ 245 (323)
T ss_pred EEEEecCCCceEEEeecceEEEEccCCchH----HhhhceeEEeeecccCCceEEEEeceeEeccccc------------
Confidence 777765 4788899999998866664311 112333445553 3899999999988
Q ss_pred EEEEEcccCCcEEEEEeC
Q 041325 433 FLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 433 ~~l~s~~~Dg~i~iw~l~ 450 (450)
.|+|||.||.|.+||+.
T Consensus 246 -tfaTgGsDG~V~~Wd~~ 262 (323)
T KOG1036|consen 246 -TFATGGSDGIVNIWDLF 262 (323)
T ss_pred -eEEecCCCceEEEccCc
Confidence 89999999999999973
No 128
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=4.7e-26 Score=186.09 Aligned_cols=252 Identities=16% Similarity=0.282 Sum_probs=200.8
Q ss_pred CccccCCCCCccceeeeEEeecCCCcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCce
Q 041325 51 SSFRKQAPAASEHQCSATLKVKGNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAV 130 (450)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 130 (450)
....+.++......++.+|+ +|.+.|..|+++...+++++.|.+|+.|.++.. .... + .....+
T Consensus 87 ~DG~VkiWnlsqR~~~~~f~--AH~G~V~Gi~v~~~~~~tvgdDKtvK~wk~~~~-p~~t------------i-lg~s~~ 150 (433)
T KOG0268|consen 87 CDGEVKIWNLSQRECIRTFK--AHEGLVRGICVTQTSFFTVGDDKTVKQWKIDGP-PLHT------------I-LGKSVY 150 (433)
T ss_pred cCceEEEEehhhhhhhheee--cccCceeeEEecccceEEecCCcceeeeeccCC-ccee------------e-eccccc
Confidence 34556678888899999999 999999999998899999999999999998763 2222 1 122355
Q ss_pred EEEEEe--CCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeec
Q 041325 131 KSLVVL--GDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVH 208 (450)
Q Consensus 131 ~~l~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (450)
..+.-+ .+.++|+|+ .|.|||..... +...+..
T Consensus 151 ~gIdh~~~~~~FaTcGe--~i~IWD~~R~~-------------------------------------------Pv~smsw 185 (433)
T KOG0268|consen 151 LGIDHHRKNSVFATCGE--QIDIWDEQRDN-------------------------------------------PVSSMSW 185 (433)
T ss_pred cccccccccccccccCc--eeeecccccCC-------------------------------------------ccceeec
Confidence 556554 333888877 59999998762 2333334
Q ss_pred CCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchh
Q 041325 209 HVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAA 287 (450)
Q Consensus 209 ~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 287 (450)
-.+.|.++.|+| ....|++++.|+.|.+||+++..++..+. ..-.-+.|+|+| +...+++|..|..++.||++.-+
T Consensus 186 G~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi--~~mRTN~IswnP-eafnF~~a~ED~nlY~~DmR~l~ 262 (433)
T KOG0268|consen 186 GADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVI--LTMRTNTICWNP-EAFNFVAANEDHNLYTYDMRNLS 262 (433)
T ss_pred CCCceeEEecCCCcchheeeeccCCceEEEecccCCccceee--eeccccceecCc-cccceeeccccccceehhhhhhc
Confidence 566899999999 45677788899999999999999998886 566779999999 55568999999999999997654
Q ss_pred hhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC---ccceEE
Q 041325 288 LQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH---TKAILC 364 (450)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~ 364 (450)
.++....+|.+.|.++.|+|.|+-+++|+.|.+|+||..+.+.- .-..| -..|.|
T Consensus 263 -------~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~S---------------RdiYhtkRMq~V~~ 320 (433)
T KOG0268|consen 263 -------RPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHS---------------RDIYHTKRMQHVFC 320 (433)
T ss_pred -------ccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcc---------------hhhhhHhhhheeeE
Confidence 36778889999999999999999999999999999999986531 11112 245899
Q ss_pred EEEeC--CeEEEEeCCCeEEEeeCCC
Q 041325 365 LAVVS--NLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 365 ~~~~~--~~l~s~~~dg~v~iwd~~~ 388 (450)
+.|+- .++++||.|+.|++|....
T Consensus 321 Vk~S~Dskyi~SGSdd~nvRlWka~A 346 (433)
T KOG0268|consen 321 VKYSMDSKYIISGSDDGNVRLWKAKA 346 (433)
T ss_pred EEEeccccEEEecCCCcceeeeecch
Confidence 99984 4999999999999998764
No 129
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.9e-24 Score=196.98 Aligned_cols=267 Identities=16% Similarity=0.260 Sum_probs=207.0
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCC-ceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeE
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNN-YVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKI 149 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i 149 (450)
+|...-+.++| +|++|++++.||.|++|+..... .... +.-++..|.+++...+.|++|+.+++|
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~t------------i~~~g~~v~~ia~~s~~f~~~s~~~tv 78 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPET------------IDISGELVSSIACYSNHFLTGSEQNTV 78 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCch------------hhccCceeEEEeecccceEEeeccceE
Confidence 79999999999 79999999999999999876552 1111 122778999999999999999999999
Q ss_pred EEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe
Q 041325 150 RVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS 229 (450)
Q Consensus 150 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 229 (450)
.+|.+.+++.. -.+...+-++++++++.+|++++.|+
T Consensus 79 ~~y~fps~~~~-------------------------------------------~iL~Rftlp~r~~~v~g~g~~iaags 115 (933)
T KOG1274|consen 79 LRYKFPSGEED-------------------------------------------TILARFTLPIRDLAVSGSGKMIAAGS 115 (933)
T ss_pred EEeeCCCCCcc-------------------------------------------ceeeeeeccceEEEEecCCcEEEeec
Confidence 99999988421 01112334799999999999999999
Q ss_pred CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhh-cccceE
Q 041325 230 WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEK-HKSAVT 308 (450)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~i~ 308 (450)
.|-.|++-++.+......++ +|..+|.++.++| .+.+|++.+.||.|++||+.++.+....... ...... ....+.
T Consensus 116 dD~~vK~~~~~D~s~~~~lr-gh~apVl~l~~~p-~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v-~k~n~~~~s~i~~ 192 (933)
T KOG1274|consen 116 DDTAVKLLNLDDSSQEKVLR-GHDAPVLQLSYDP-KGNFLAVSSCDGKVQIWDLQDGILSKTLTGV-DKDNEFILSRICT 192 (933)
T ss_pred CceeEEEEeccccchheeec-ccCCceeeeeEcC-CCCEEEEEecCceEEEEEcccchhhhhcccC-Cccccccccceee
Confidence 99999999999998888888 9999999999999 5559999999999999999877632111100 001111 145677
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeC
Q 041325 309 ALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRR 386 (450)
Q Consensus 309 ~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~ 386 (450)
.++|+|+|..++..+.|+.|++|+.......+ ......+...+.++.|+ |.|||+++.||.|.|||.
T Consensus 193 ~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f-----------~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv 261 (933)
T KOG1274|consen 193 RLAWHPKGGTLAVPPVDNTVKVYSRKGWELQF-----------KLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNV 261 (933)
T ss_pred eeeecCCCCeEEeeccCCeEEEEccCCceehe-----------eecccccccceEEEEEcCCCcEEeeeccCCcEEEEec
Confidence 89999998888888999999999998776542 22233344558888888 559999999999999999
Q ss_pred CCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 387 SSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
++- .. ......|.+++|.|+..
T Consensus 262 ~t~--------~~----~~~~~~Vc~~aw~p~~n 283 (933)
T KOG1274|consen 262 DTH--------ER----HEFKRAVCCEAWKPNAN 283 (933)
T ss_pred ccc--------hh----ccccceeEEEecCCCCC
Confidence 851 10 22346788888888876
No 130
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=8.8e-27 Score=208.07 Aligned_cols=237 Identities=19% Similarity=0.267 Sum_probs=185.2
Q ss_pred EEEEE---eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe---CCeEEEEeCCCeEEEE
Q 041325 79 PSLAI---AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL---GDKLFSAHQDHKIRVW 152 (450)
Q Consensus 79 ~~~~~---d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~l~s~~~dg~i~iw 152 (450)
..|.| +.++|||++..|.|.+||+...... .....+..|...++++.|+ |+.|++|+.||+|++|
T Consensus 91 ~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rn---------k~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~ 161 (839)
T KOG0269|consen 91 ADVKWGQLYSNLIATCSTNGVISVWDLNKSIRN---------KLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCW 161 (839)
T ss_pred hhcccccchhhhheeecCCCcEEEEecCccccc---------hhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEE
Confidence 34455 6899999999999999999862100 1112377999999999998 5559999999999999
Q ss_pred EcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEEEEEeCC
Q 041325 153 KIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLYSTSWD 231 (450)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d 231 (450)
|++..+. ...+.+....|+++.|+| .+..|+++.+.
T Consensus 162 DlR~~~S-------------------------------------------~~t~~~nSESiRDV~fsp~~~~~F~s~~ds 198 (839)
T KOG0269|consen 162 DLRSKKS-------------------------------------------KSTFRSNSESIRDVKFSPGYGNKFASIHDS 198 (839)
T ss_pred eeecccc-------------------------------------------cccccccchhhhceeeccCCCceEEEecCC
Confidence 9998732 122334566899999999 78899999999
Q ss_pred CcEEEEecCCCeE-EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEE
Q 041325 232 RTFKIWRTSDFRC-LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310 (450)
Q Consensus 232 g~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l 310 (450)
|.+++||++.... ...+. +|.++|.++.|+| +..+|++|+.|+.|+|||+.+.+. ..+.++ ....++.++
T Consensus 199 G~lqlWDlRqp~r~~~k~~-AH~GpV~c~nwhP-nr~~lATGGRDK~vkiWd~t~~~~------~~~~tI-nTiapv~rV 269 (839)
T KOG0269|consen 199 GYLQLWDLRQPDRCEKKLT-AHNGPVLCLNWHP-NREWLATGGRDKMVKIWDMTDSRA------KPKHTI-NTIAPVGRV 269 (839)
T ss_pred ceEEEeeccCchhHHHHhh-cccCceEEEeecC-CCceeeecCCCccEEEEeccCCCc------cceeEE-eecceeeee
Confidence 9999999997654 34444 9999999999999 677999999999999999976441 122222 245789999
Q ss_pred EEcCCCC-EEEEeeC--CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC---CeEEEEeCCCeEEEe
Q 041325 311 ALSTDGT-VLYSGAC--DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS---NLLFSGSSDNTIRIW 384 (450)
Q Consensus 311 ~~~~~~~-~l~~g~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iw 384 (450)
.|-|+.. .|++++. |-.|+|||++.. ..+...+..|...++.++|.. ..+.+++.||+|..-
T Consensus 270 kWRP~~~~hLAtcsmv~dtsV~VWDvrRP------------YIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh 337 (839)
T KOG0269|consen 270 KWRPARSYHLATCSMVVDTSVHVWDVRRP------------YIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQH 337 (839)
T ss_pred eeccCccchhhhhhccccceEEEEeeccc------------cccceeeeccCccccceeccCCCceeeEeecCccHHHHh
Confidence 9999665 4555553 788999999843 235578889999999999984 389999999998766
Q ss_pred eCCC
Q 041325 385 RRSS 388 (450)
Q Consensus 385 d~~~ 388 (450)
.+++
T Consensus 338 ~~kn 341 (839)
T KOG0269|consen 338 LFKN 341 (839)
T ss_pred hhhc
Confidence 5554
No 131
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.9e-25 Score=188.43 Aligned_cols=234 Identities=24% Similarity=0.365 Sum_probs=187.7
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCe
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHK 148 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~ 148 (450)
--.++|.|++- +|.+|+.|+..|.+++|.+.+|.++.. +.+|-..|+++.|++|+ |+||+.||.
T Consensus 79 v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v------------~~aHYQ~ITcL~fs~dgs~iiTgskDg~ 146 (476)
T KOG0646|consen 79 VLPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNV------------LSAHYQSITCLKFSDDGSHIITGSKDGA 146 (476)
T ss_pred ccccceeeeecCCCceEEEeecccCcEEEEEeccccHHHH------------HHhhccceeEEEEeCCCcEEEecCCCcc
Confidence 34678999988 689999998999999999999998877 67999999999999887 999999999
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC--CCEEE
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD--GSLLY 226 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~ 226 (450)
|.+|.+..--. ..+.. .-.+...+.+|.-+|+++...+. ..+++
T Consensus 147 V~vW~l~~lv~------------------a~~~~----------------~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~ 192 (476)
T KOG0646|consen 147 VLVWLLTDLVS------------------ADNDH----------------SVKPLHIFSDHTLSITDLQIGSGGTNARLY 192 (476)
T ss_pred EEEEEEEeecc------------------cccCC----------------CccceeeeccCcceeEEEEecCCCccceEE
Confidence 99999865411 00000 11345567789999999998764 46899
Q ss_pred EEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc--------cccchhhh
Q 041325 227 STSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV--------NKKHSLVQ 298 (450)
Q Consensus 227 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--------~~~~~~~~ 298 (450)
+++.|.++++||+..+..+..+. ....+.+++..| .+..+++|+.+|.|.+.++..-.-+. ........
T Consensus 193 TaS~D~t~k~wdlS~g~LLlti~--fp~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~ 269 (476)
T KOG0646|consen 193 TASEDRTIKLWDLSLGVLLLTIT--FPSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQIN 269 (476)
T ss_pred EecCCceEEEEEeccceeeEEEe--cCCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceee
Confidence 99999999999999999998886 788999999999 55589999999999998875533111 12223455
Q ss_pred hHhhccc--ceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe
Q 041325 299 TLEKHKS--AVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV 368 (450)
Q Consensus 299 ~~~~~~~--~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 368 (450)
.+.+|.+ .|+|++++-||.+|++|+.||.|+|||+.+.+++ +.+....++|+.+.+.
T Consensus 270 ~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~i-------------Rtl~~~kgpVtnL~i~ 328 (476)
T KOG0646|consen 270 VLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCI-------------RTLQTSKGPVTNLQIN 328 (476)
T ss_pred eeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHH-------------HHHhhhccccceeEee
Confidence 5677877 9999999999999999999999999999988766 4444456777777774
No 132
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.2e-25 Score=188.54 Aligned_cols=252 Identities=17% Similarity=0.251 Sum_probs=184.9
Q ss_pred CCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEE
Q 041325 137 GDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSAL 216 (450)
Q Consensus 137 ~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 216 (450)
++++|.|+.|..|.|||+.-....... ..+- ....+.....+.......+|++.|.++
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~-------------~~LG---------s~~sk~~~k~~k~~~~~~gHTdavl~L 249 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPC-------------VTLG---------SKASKKKKKKGKRSNSASGHTDAVLAL 249 (463)
T ss_pred cceEEEeccCceeEEeccccccccccc-------------eeec---------hhhhhhhhhhcccccccccchHHHHHH
Confidence 345999999999999999755221100 0000 000000011112223345799999999
Q ss_pred EEcc-CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccch
Q 041325 217 ALSS-DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHS 295 (450)
Q Consensus 217 ~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 295 (450)
+|+. ..+.|++|+.|.+|++||+.++++...+. .|...|.++.|+|....+|++|+.|++|.+.|.|...
T Consensus 250 s~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~-~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~-------- 320 (463)
T KOG0270|consen 250 SWNRNFRNVLASGSADKTVKLWDVDTGKPKSSIT-HHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPS-------- 320 (463)
T ss_pred HhccccceeEEecCCCceEEEEEcCCCCcceehh-hcCCceeEEEecCCCceEEEeccccceEEeeeccCcc--------
Confidence 9988 46789999999999999999999999998 8999999999999888899999999999999997532
Q ss_pred hhhhHhhcccceEEEEEcCC-CCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe---CCe
Q 041325 296 LVQTLEKHKSAVTALALSTD-GTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV---SNL 371 (450)
Q Consensus 296 ~~~~~~~~~~~i~~l~~~~~-~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~ 371 (450)
.....-...+.|-.++|.|. ...++++..||.|+-+|++... .+...++.|..+|.+++++ +.+
T Consensus 321 ~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~------------~~vwt~~AHd~~ISgl~~n~~~p~~ 388 (463)
T KOG0270|consen 321 NSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG------------KPVWTLKAHDDEISGLSVNIQTPGL 388 (463)
T ss_pred ccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCC------------CceeEEEeccCCcceEEecCCCCcc
Confidence 11122224578999999984 4577888899999999999752 2347889999999999998 569
Q ss_pred EEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 372 LFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 372 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+++++.|+.|++|++.... .+.+....-.-+...|.++.|+-.+ .++.||..+.++|||+
T Consensus 389 l~t~s~d~~Vklw~~~~~~------~~~v~~~~~~~~rl~c~~~~~~~a~------------~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 389 LSTASTDKVVKLWKFDVDS------PKSVKEHSFKLGRLHCFALDPDVAF------------TLAFGGEKAVLRVWDI 448 (463)
T ss_pred eeeccccceEEEEeecCCC------CcccccccccccceeecccCCCcce------------EEEecCccceEEEeec
Confidence 9999999999999987531 1111111111223566677777664 8999999999999997
No 133
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=7.3e-24 Score=180.64 Aligned_cols=288 Identities=19% Similarity=0.288 Sum_probs=214.2
Q ss_pred CCccceeeeEEeecCCCcceEEEEE---eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEE
Q 041325 59 AASEHQCSATLKVKGNSSYIPSLAI---AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVV 135 (450)
Q Consensus 59 ~~~~~~~~~~l~~~~h~~~v~~~~~---d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 135 (450)
..+........+ .....|....| |.+++++.+. |.+..|+++++.+.+.....++ .....|.|++|
T Consensus 186 dWqk~~~~~~vk--~sne~v~~a~FHPtd~nliit~Gk-~H~~Fw~~~~~~l~k~~~~fek--------~ekk~Vl~v~F 254 (626)
T KOG2106|consen 186 DWQKKAKLGPVK--TSNEVVFLATFHPTDPNLIITCGK-GHLYFWTLRGGSLVKRQGIFEK--------REKKFVLCVTF 254 (626)
T ss_pred hchhhhccCcce--eccceEEEEEeccCCCcEEEEeCC-ceEEEEEccCCceEEEeecccc--------ccceEEEEEEE
Confidence 333334444444 55677888888 7888888876 8999999999887666433221 22357999999
Q ss_pred eCCe-EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceE
Q 041325 136 LGDK-LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVS 214 (450)
Q Consensus 136 ~~~~-l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 214 (450)
.+++ +++|..+|.|.||+....... .....|.+.|.
T Consensus 255 ~engdviTgDS~G~i~Iw~~~~~~~~-------------------------------------------k~~~aH~ggv~ 291 (626)
T KOG2106|consen 255 LENGDVITGDSGGNILIWSKGTNRIS-------------------------------------------KQVHAHDGGVF 291 (626)
T ss_pred cCCCCEEeecCCceEEEEeCCCceEE-------------------------------------------eEeeecCCceE
Confidence 9888 999999999999999765211 11126999999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEe----------------------------------------eccccc
Q 041325 215 ALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESV----------------------------------------KNAHDD 254 (450)
Q Consensus 215 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----------------------------------------~~~~~~ 254 (450)
+++.-.+|.+|- |+.|..|..||-. .+.++.. ..+|..
T Consensus 292 ~L~~lr~GtllS-GgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~d 369 (626)
T KOG2106|consen 292 SLCMLRDGTLLS-GGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGD 369 (626)
T ss_pred EEEEecCccEee-cCccceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEeccc
Confidence 999999997555 9999999999832 1111110 025667
Q ss_pred ceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcC
Q 041325 255 AINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERD 334 (450)
Q Consensus 255 ~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~ 334 (450)
....++.+|+ ++.+++++.|+.+++|+ ..+ +... .....++.++.|+|.| .++.|+..|...+.|.+
T Consensus 370 elwgla~hps-~~q~~T~gqdk~v~lW~--~~k--------~~wt-~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e 436 (626)
T KOG2106|consen 370 ELWGLATHPS-KNQLLTCGQDKHVRLWN--DHK--------LEWT-KIIEDPAECADFHPSG-VVAVGTATGRWFVLDTE 436 (626)
T ss_pred ceeeEEcCCC-hhheeeccCcceEEEcc--CCc--------eeEE-EEecCceeEeeccCcc-eEEEeeccceEEEEecc
Confidence 7888888884 45899999999999999 222 1111 2245778999999999 99999999999999999
Q ss_pred CCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEE
Q 041325 335 QGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKC 412 (450)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~ 412 (450)
+...+ .+.....+++++.|+ |.+||.|+.|+.|++|.+..+ +.+....-+.|.++|+.
T Consensus 437 ~~~lv--------------~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~------g~~y~r~~k~~gs~ith 496 (626)
T KOG2106|consen 437 TQDLV--------------TIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN------GRKYSRVGKCSGSPITH 496 (626)
T ss_pred cceeE--------------EEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC------CcEEEEeeeecCceeEE
Confidence 85433 222227788999998 559999999999999998854 22333333444589999
Q ss_pred EEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 413 LTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 413 l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
+.|++|++ ++.+-+.|-.|..|+
T Consensus 497 LDwS~Ds~-------------~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 497 LDWSSDSQ-------------FLVSNSGDYEILYWK 519 (626)
T ss_pred eeecCCCc-------------eEEeccCceEEEEEc
Confidence 99999999 999999999999993
No 134
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.5e-25 Score=187.86 Aligned_cols=242 Identities=19% Similarity=0.316 Sum_probs=183.9
Q ss_pred CCEEEEeeCCCcEEEecCCCCCceee---eec------CCCCcceeEEecCCCceEEEEEeCCe---EEEEeCCCeEEEE
Q 041325 85 GKLLYGGSSNGEIRAWNRDPNNYVNI---TST------DVGDHANVVATGNGDAVKSLVVLGDK---LFSAHQDHKIRVW 152 (450)
Q Consensus 85 ~~~l~tgs~dg~v~vw~~~~~~~~~~---~~~------~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iw 152 (450)
|+++|.|+.|..|.|||++=...+.. ... ...........+|+..|.+|.|+... |++|+.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 78999999999999999864322111 000 00111333456899999999998555 9999999999999
Q ss_pred EcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEEEEEeCC
Q 041325 153 KIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLYSTSWD 231 (450)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d 231 (450)
|+.+++ +.. .+..|.+.|.+++|+| ....|++|+.|
T Consensus 272 D~~~g~----------------p~~---------------------------s~~~~~k~Vq~l~wh~~~p~~LLsGs~D 308 (463)
T KOG0270|consen 272 DVDTGK----------------PKS---------------------------SITHHGKKVQTLEWHPYEPSVLLSGSYD 308 (463)
T ss_pred EcCCCC----------------cce---------------------------ehhhcCCceeEEEecCCCceEEEecccc
Confidence 999993 222 3336899999999999 67899999999
Q ss_pred CcEEEEecCCCeEE-EEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEE
Q 041325 232 RTFKIWRTSDFRCL-ESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310 (450)
Q Consensus 232 g~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l 310 (450)
++|.+.|.+..... ..+ ...+.|..++|.|.....++++..||.|+-+|+|... +++.+++.|..+|.++
T Consensus 309 ~~V~l~D~R~~~~s~~~w--k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~-------~~vwt~~AHd~~ISgl 379 (463)
T KOG0270|consen 309 GTVALKDCRDPSNSGKEW--KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG-------KPVWTLKAHDDEISGL 379 (463)
T ss_pred ceEEeeeccCccccCceE--EeccceEEEEecCCCceeEEEecCCceEEeeecCCCC-------CceeEEEeccCCcceE
Confidence 99999999853322 223 3668899999999888889999999999999998753 4788899999999999
Q ss_pred EEcCC-CCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC---eEEEEeCCCeEEEeeC
Q 041325 311 ALSTD-GTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN---LLFSGSSDNTIRIWRR 386 (450)
Q Consensus 311 ~~~~~-~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~~~dg~v~iwd~ 386 (450)
++++. -.++++++.|+.|++|++.....- ......+ .-+...|++++++ .++.|+..+.++|||+
T Consensus 380 ~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~---------~v~~~~~--~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~ 448 (463)
T KOG0270|consen 380 SVNIQTPGLLSTASTDKVVKLWKFDVDSPK---------SVKEHSF--KLGRLHCFALDPDVAFTLAFGGEKAVLRVWDI 448 (463)
T ss_pred EecCCCCcceeeccccceEEEEeecCCCCc---------ccccccc--cccceeecccCCCcceEEEecCccceEEEeec
Confidence 99874 457899999999999999753321 0000111 1122456666655 8899999999999998
Q ss_pred CCC
Q 041325 387 SSS 389 (450)
Q Consensus 387 ~~~ 389 (450)
.+.
T Consensus 449 ~~~ 451 (463)
T KOG0270|consen 449 FTN 451 (463)
T ss_pred ccC
Confidence 864
No 135
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.94 E-value=6e-24 Score=187.83 Aligned_cols=359 Identities=17% Similarity=0.215 Sum_probs=245.5
Q ss_pred CCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCC---EEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEe
Q 041325 50 SSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGK---LLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVAT 124 (450)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~---~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~ 124 (450)
.....+....+.....+.++. ||..+|+|+.+ +.+ ++++|+.||.|++|.++....... ..+.
T Consensus 31 Ga~~~Iav~dp~k~~i~t~l~--GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i----------~~~~ 98 (764)
T KOG1063|consen 31 GAGPAIAVADPEKILIVTTLD--GHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKI----------YTIQ 98 (764)
T ss_pred cCCceEEEeCcccceeEEecc--CCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEE----------Eeec
Confidence 333444445544455666777 99999999999 444 899999999999999985444333 2244
Q ss_pred cCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEeccCc-ccccceeeeeeccCCCcceeEeeecCceEEEee---
Q 041325 125 GNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGK-LKNKYYERIATLPTLNDRFTKCFLANNYVQVRR--- 200 (450)
Q Consensus 125 ~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 200 (450)
+|...+.|+.-......+.+.|+++.+||.+..+......... .+....-++..++..+....++...+..+.+..
T Consensus 99 g~~~~~~cv~a~~~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~ 178 (764)
T KOG1063|consen 99 GHCKECVCVVARSSVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSA 178 (764)
T ss_pred CcceeEEEEEeeeeEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCC
Confidence 5655555444333333334789999999995554211111111 111222455555523333333333444444433
Q ss_pred ---cceeeeecCCCceEEEEEccCC---CEEEEEeCCCcEEEEecCCCe---------------------EEEE------
Q 041325 201 ---HKKCTWVHHVDTVSALALSSDG---SLLYSTSWDRTFKIWRTSDFR---------------------CLES------ 247 (450)
Q Consensus 201 ---~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~---------------------~~~~------ 247 (450)
.....+.+|.+.|.+++|...+ -+|++++.|..||||.+.-+. ....
T Consensus 179 d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is 258 (764)
T KOG1063|consen 179 DSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRIS 258 (764)
T ss_pred cceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEe
Confidence 3456788999999999998744 378899999999999764221 1111
Q ss_pred ---eecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC
Q 041325 248 ---VKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC 324 (450)
Q Consensus 248 ---~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~ 324 (450)
+..+|.+.|+++.|+|.. ..|++++.|.++.+|...+..-. -.....+..+.+.........|+|+++.+++-+.
T Consensus 259 ~eall~GHeDWV~sv~W~p~~-~~LLSASaDksmiiW~pd~~tGi-Wv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~ 336 (764)
T KOG1063|consen 259 FEALLMGHEDWVYSVWWHPEG-LDLLSASADKSMIIWKPDENTGI-WVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGR 336 (764)
T ss_pred hhhhhcCcccceEEEEEccch-hhheecccCcceEEEecCCccce-EEEEEEeecccccccceeeEEEcCCCCEEEEecc
Confidence 113899999999999843 37999999999999987554200 0000112233344566889999999999999999
Q ss_pred CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEE
Q 041325 325 DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAV 402 (450)
Q Consensus 325 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 402 (450)
.|..++|.... .........+.+|...|..++|+ |++|++.+.|.+-|+|-.-.. +..+..+..
T Consensus 337 ~Gg~hlWkt~d----------~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~----q~~wHEiaR 402 (764)
T KOG1063|consen 337 TGGFHLWKTKD----------KTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGR----QQEWHEIAR 402 (764)
T ss_pred cCcEEEEeccC----------ccceeeccccccccccceeeeecCCCCEEEEeccccceeeeccccc----ccceeeecc
Confidence 99999998332 22334556788999999999999 679999999999999865521 233677777
Q ss_pred ecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 403 LEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 403 ~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
.+-|.-.++|++|.+... .+++|.++..+|+|+.
T Consensus 403 PQiHGyDl~c~~~vn~~~-------------~FVSgAdEKVlRvF~a 436 (764)
T KOG1063|consen 403 PQIHGYDLTCLSFVNEDL-------------QFVSGADEKVLRVFEA 436 (764)
T ss_pred cccccccceeeehccCCc-------------eeeecccceeeeeecC
Confidence 888999999999999644 6999999999999874
No 136
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=3e-25 Score=182.36 Aligned_cols=269 Identities=18% Similarity=0.245 Sum_probs=196.9
Q ss_pred EEecCCCceEEEEEeCC--e--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEE
Q 041325 122 VATGNGDAVKSLVVLGD--K--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQ 197 (450)
Q Consensus 122 ~~~~h~~~v~~l~~~~~--~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (450)
...+|.+.++.+...+- . .++-+..|.|.||++...-........... .
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~---------------------------~ 198 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVK---------------------------D 198 (440)
T ss_pred cccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCcccccc---------------------------c
Confidence 34567777777776633 2 667788999999999754211000000000 0
Q ss_pred EeecceeeeecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCeEE---EEeecccccceEEEEEeecCCcEEEEEc
Q 041325 198 VRRHKKCTWVHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSDFRCL---ESVKNAHDDAINAIVVSKSNDGFVYTGS 273 (450)
Q Consensus 198 ~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 273 (450)
....+..++.+|.+.=..++|+| ....|++|.--+.|++|...++.-. ..+. +|...|..++|+|..++.|++|+
T Consensus 199 s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~-gH~~SVEDLqWSptE~~vfaScS 277 (440)
T KOG0302|consen 199 SEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFT-GHTKSVEDLQWSPTEDGVFASCS 277 (440)
T ss_pred cccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCcccc-ccccchhhhccCCccCceEEeee
Confidence 12345667778999999999999 2234788887889999999886522 2333 69999999999999999999999
Q ss_pred CCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeec
Q 041325 274 ADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKG 353 (450)
Q Consensus 274 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 353 (450)
.||.|+|||+|.+. ... .+ ..+.|.+.|+.|.|+.+..+|++|+.||+++|||+++-+.- .+..
T Consensus 278 ~DgsIrIWDiRs~~----~~~-~~-~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~----------~pVA 341 (440)
T KOG0302|consen 278 CDGSIRIWDIRSGP----KKA-AV-STKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSG----------QPVA 341 (440)
T ss_pred cCceEEEEEecCCC----ccc-ee-EeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCC----------Ccce
Confidence 99999999999874 111 22 23789999999999998889999999999999999965421 3456
Q ss_pred cccCCccceEEEEEeCC---eEEEEeCCCeEEEeeCCCCcccc-----------CCCceeEEEecCCCcceEEEEEEecC
Q 041325 354 ALRGHTKAILCLAVVSN---LLFSGSSDNTIRIWRRSSSVTDH-----------QKGYSCLAVLEGHRRPVKCLTAVVDS 419 (450)
Q Consensus 354 ~~~~~~~~v~~~~~~~~---~l~s~~~dg~v~iwd~~~~~~~~-----------~~~~~~~~~~~~h~~~v~~l~~~~~~ 419 (450)
.++.|..+|+++.|++. .|++++.|..|.+||+....... .-+.+++...+ -...+..+.|+++-
T Consensus 342 ~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~Qi 420 (440)
T KOG0302|consen 342 TFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQI 420 (440)
T ss_pred eEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEec-chhHhhhheeccCC
Confidence 78899999999999954 89999999999999987543211 01122333222 35678999999987
Q ss_pred CCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 420 DYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 420 ~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
.. ++++.+.|| +.||.
T Consensus 421 PG------------~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 421 PG------------LLVSTAIDG-FNVFK 436 (440)
T ss_pred CC------------eEEEecccc-eeEEE
Confidence 75 899999999 45553
No 137
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=2.6e-25 Score=182.72 Aligned_cols=209 Identities=22% Similarity=0.359 Sum_probs=169.7
Q ss_pred ecCCCceEEEEEccCC--CEEEEEeCCCcEEEEecCC----------------CeEEEEeecccccceEEEEEeecCCcE
Q 041325 207 VHHVDTVSALALSSDG--SLLYSTSWDRTFKIWRTSD----------------FRCLESVKNAHDDAINAIVVSKSNDGF 268 (450)
Q Consensus 207 ~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~----------------~~~~~~~~~~~~~~v~~~~~~~~~~~~ 268 (450)
..|.+.++.+.-.+-+ .+.++=+..|.|+|||+.. .+++.++. .|+..-+.++|+|...+.
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~-ghk~EGy~LdWSp~~~g~ 226 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFN-GHKGEGYGLDWSPIKTGR 226 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEec-ccCccceeeecccccccc
Confidence 3577777777777644 4555556889999999853 34566666 788889999999988888
Q ss_pred EEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCC-CCEEEEeeCCCcEEEEEcCCCceeeeCCCCCC
Q 041325 269 VYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTD-GTVLYSGACDRSILVWERDQGNYIVDGDDDSG 347 (450)
Q Consensus 269 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~ 347 (450)
+++|..-+.|++|...++.... -...+.+|...|-.++|+|. ...|++|+.||+|+|||++.+..-
T Consensus 227 LlsGDc~~~I~lw~~~~g~W~v-----d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~-------- 293 (440)
T KOG0302|consen 227 LLSGDCVKGIHLWEPSTGSWKV-----DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKK-------- 293 (440)
T ss_pred cccCccccceEeeeeccCceee-----cCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcc--------
Confidence 9999999999999988765332 23345569999999999995 468899999999999999987321
Q ss_pred ceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCC
Q 041325 348 HMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRN 425 (450)
Q Consensus 348 ~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~ 425 (450)
.....+.|.+.|+.|+|+.+ +|++|+.||+++|||++. .+..+++..++.|..+|++|.|+|....
T Consensus 294 ---~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~-----~~~~~pVA~fk~Hk~pItsieW~p~e~s---- 361 (440)
T KOG0302|consen 294 ---AAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQ-----FKSGQPVATFKYHKAPITSIEWHPHEDS---- 361 (440)
T ss_pred ---ceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhh-----ccCCCcceeEEeccCCeeEEEeccccCc----
Confidence 11233889999999999955 899999999999999997 3445789999999999999999998764
Q ss_pred CCCCCceEEEEEcccCCcEEEEEe
Q 041325 426 SDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 426 ~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
.|+++|.|.+|.||||
T Consensus 362 --------~iaasg~D~QitiWDl 377 (440)
T KOG0302|consen 362 --------VIAASGEDNQITIWDL 377 (440)
T ss_pred --------eEEeccCCCcEEEEEe
Confidence 8999999999999998
No 138
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=1.1e-24 Score=202.20 Aligned_cols=303 Identities=17% Similarity=0.207 Sum_probs=218.7
Q ss_pred ccCCCccCCCCCccccccccc--cCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEE
Q 041325 13 RNKEPKFQPSSNHLQSELSNA--SLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLL 88 (450)
Q Consensus 13 ~~~~~~~~p~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l 88 (450)
+|.++.-+|+....+...+.. .... .+...+-........ .-...+-++. .|.+.|+|+.| ||++|
T Consensus 15 ~IfSIdv~pdg~~~aTgGq~~d~~~~i----W~~~~vl~~~~~~~~----~l~k~l~~m~--~h~~sv~CVR~S~dG~~l 84 (942)
T KOG0973|consen 15 SIFSIDVHPDGVKFATGGQVLDGGIVI----WSQDPVLDEKEEKNE----NLPKHLCTMD--DHDGSVNCVRFSPDGSYL 84 (942)
T ss_pred eEEEEEecCCceeEecCCcccccccee----eccccccchhhhhhc----ccchhheeec--cccCceeEEEECCCCCeE
Confidence 566777788888777766333 2221 000000000000001 0235666777 99999999999 99999
Q ss_pred EEeeCCCcEEEecCCCCCceeee------ecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCcee
Q 041325 89 YGGSSNGEIRAWNRDPNNYVNIT------STDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSA 160 (450)
Q Consensus 89 ~tgs~dg~v~vw~~~~~~~~~~~------~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~ 160 (450)
|+|++|+.|.||..........+ ...+.-.....+.+|...|..++|+|+. |++++.|++|.+||..+.
T Consensus 85 AsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF--- 161 (942)
T KOG0973|consen 85 ASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF--- 161 (942)
T ss_pred eeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc---
Confidence 99999999999998741111111 1112223456788999999999999877 999999999999999877
Q ss_pred EEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 041325 161 YYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTS 240 (450)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 240 (450)
+ ....+.+|.+.|..+.|.|-|++|++-+.|++|++|++.
T Consensus 162 -------------~---------------------------~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~ 201 (942)
T KOG0973|consen 162 -------------E---------------------------LLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTS 201 (942)
T ss_pred -------------e---------------------------eeeeeecccccccceEECCccCeeeeecCCceEEEEEcc
Confidence 2 233455899999999999999999999999999999988
Q ss_pred CCeEEEEeecc-----cccceEEEEEeecCCcEEEEEcC----CCcEEEEeCcchhhhccccchhhhhHhhcccceEEEE
Q 041325 241 DFRCLESVKNA-----HDDAINAIVVSKSNDGFVYTGSA----DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALA 311 (450)
Q Consensus 241 ~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 311 (450)
+....+.+... .......+.|+|++. +|++... -..+.|.+- ..++.-..+.+|..++.++.
T Consensus 202 dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~-~las~nA~n~~~~~~~IieR--------~tWk~~~~LvGH~~p~evvr 272 (942)
T KOG0973|consen 202 DWGIEKSITKPFEESPLTTFFLRLSWSPDGH-HLASPNAVNGGKSTIAIIER--------GTWKVDKDLVGHSAPVEVVR 272 (942)
T ss_pred cceeeEeeccchhhCCCcceeeecccCCCcC-eecchhhccCCcceeEEEec--------CCceeeeeeecCCCceEEEE
Confidence 87776666522 234578899999666 6665432 235666664 34446677889999999999
Q ss_pred EcCC-----CC------------EEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eE
Q 041325 312 LSTD-----GT------------VLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LL 372 (450)
Q Consensus 312 ~~~~-----~~------------~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l 372 (450)
|+|. .+ .+|+|+.|++|.||.....++++ ....-....|..++|+++ .|
T Consensus 273 FnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~------------vi~~lf~~SI~DmsWspdG~~L 340 (942)
T KOG0973|consen 273 FNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF------------VIHNLFNKSIVDMSWSPDGFSL 340 (942)
T ss_pred eChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh------------hhhhhhcCceeeeeEcCCCCeE
Confidence 9981 11 68899999999999998766552 122233578999999955 89
Q ss_pred EEEeCCCeEEEeeCCCC
Q 041325 373 FSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 373 ~s~~~dg~v~iwd~~~~ 389 (450)
+++|.||+|.+..++..
T Consensus 341 facS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 341 FACSLDGTVALIHFEEK 357 (942)
T ss_pred EEEecCCeEEEEEcchH
Confidence 99999999999998764
No 139
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=6.1e-23 Score=181.17 Aligned_cols=250 Identities=20% Similarity=0.329 Sum_probs=202.4
Q ss_pred eeeEEeecCCC-cceEEEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--E
Q 041325 65 CSATLKVKGNS-SYIPSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--L 140 (450)
Q Consensus 65 ~~~~l~~~~h~-~~v~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l 140 (450)
+...+. |+. ..|-+++| ++..|++.+.+|.|.-||+.+.+.... .....+.|++++.+|.. +
T Consensus 60 ~~~vi~--g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~------------~d~~gg~IWsiai~p~~~~l 125 (691)
T KOG2048|consen 60 LEPVIH--GPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYN------------IDSNGGAIWSIAINPENTIL 125 (691)
T ss_pred eeEEEe--cCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEE------------ecCCCcceeEEEeCCccceE
Confidence 344444 665 58999999 799999999999999999999886665 55667899999999766 8
Q ss_pred EEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc
Q 041325 141 FSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS 220 (450)
Q Consensus 141 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 220 (450)
+.|+.||.+...+...+...+. ..+....++|.+++|++
T Consensus 126 ~IgcddGvl~~~s~~p~~I~~~-----------------------------------------r~l~rq~sRvLslsw~~ 164 (691)
T KOG2048|consen 126 AIGCDDGVLYDFSIGPDKITYK-----------------------------------------RSLMRQKSRVLSLSWNP 164 (691)
T ss_pred EeecCCceEEEEecCCceEEEE-----------------------------------------eecccccceEEEEEecC
Confidence 8999999777777776633111 11223467899999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCeEEEEee-------cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc
Q 041325 221 DGSLLYSTSWDRTFKIWRTSDFRCLESVK-------NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 293 (450)
++..+++|+.||.|++||...+..+.... .....-|+++.+. .++.+++|..-|.|.+||...+.
T Consensus 165 ~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L--rd~tI~sgDS~G~V~FWd~~~gT------ 236 (691)
T KOG2048|consen 165 TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL--RDSTIASGDSAGTVTFWDSIFGT------ 236 (691)
T ss_pred CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe--ecCcEEEecCCceEEEEcccCcc------
Confidence 99999999999999999999988776322 1234568888888 56799999999999999997766
Q ss_pred chhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEE
Q 041325 294 HSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLF 373 (450)
Q Consensus 294 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~ 373 (450)
+++....|.+.|.+++..++++++++++.|+.|.-|...+++. .+........|...|.+++..++.++
T Consensus 237 --LiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~---------~wv~~~~r~~h~hdvrs~av~~~~l~ 305 (691)
T KOG2048|consen 237 --LIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS---------EWVINSRRDLHAHDVRSMAVIENALI 305 (691)
T ss_pred --hhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc---------ceeeeccccCCcccceeeeeecceEE
Confidence 8999999999999999999999999999999999998876542 13344566778899999999999999
Q ss_pred EEeCCCeEEEeeCCC
Q 041325 374 SGSSDNTIRIWRRSS 388 (450)
Q Consensus 374 s~~~dg~v~iwd~~~ 388 (450)
+|+.|..+.+-....
T Consensus 306 sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 306 SGGRDFTLAICSSRE 320 (691)
T ss_pred ecceeeEEEEccccc
Confidence 999999887765443
No 140
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.93 E-value=1.2e-23 Score=169.89 Aligned_cols=318 Identities=13% Similarity=0.194 Sum_probs=225.6
Q ss_pred CccceeeeEEeecCCCcceEEEEEe-------CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEE
Q 041325 60 ASEHQCSATLKVKGNSSYIPSLAIA-------GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKS 132 (450)
Q Consensus 60 ~~~~~~~~~l~~~~h~~~v~~~~~d-------~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 132 (450)
.+.+++...++. +|..+|..++|+ ...+||.+. ..+.+++.....-....+... -..|......
T Consensus 24 k~~yk~t~~l~e-d~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~lq~y~-------D~d~~Esfyt 94 (385)
T KOG1034|consen 24 KRSYKYTNHLKE-DHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRLLQSYA-------DEDHDESFYT 94 (385)
T ss_pred ccceEeeeehhc-cCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceeeeeecc-------CCCCCcceEE
Confidence 455566666653 889999999993 456677665 578888876554333222211 1146677788
Q ss_pred EEEe---CC---eEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeee
Q 041325 133 LVVL---GD---KLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTW 206 (450)
Q Consensus 133 l~~~---~~---~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (450)
++|. .+ .+++||.-|.|++.|+.+++ ....+
T Consensus 95 csw~yd~~~~~p~la~~G~~GvIrVid~~~~~-------------------------------------------~~~~~ 131 (385)
T KOG1034|consen 95 CSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQ-------------------------------------------CSKNY 131 (385)
T ss_pred EEEEecCCCCCeeEEeecceeEEEEEecchhh-------------------------------------------hccce
Confidence 8886 21 18889999999999999873 22345
Q ss_pred ecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCeEEEEee--cccccceEEEEEeecCCcEEEEEcCCCcEEEEeC
Q 041325 207 VHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSDFRCLESVK--NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKK 283 (450)
Q Consensus 207 ~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 283 (450)
.+|...|+.+.++| +.+++++++.|..|++||+++..++..+. .+|.+.|.++.|+.+++ ++++++.|..+++|++
T Consensus 132 ~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l 210 (385)
T KOG1034|consen 132 RGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRL 210 (385)
T ss_pred eccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEec
Confidence 58999999999999 56899999999999999999999998885 37899999999999666 9999999999999999
Q ss_pred cchhhhcccc--------------------chhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEc-CCCceeeeC
Q 041325 284 LRAALQVNKK--------------------HSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWER-DQGNYIVDG 342 (450)
Q Consensus 284 ~~~~~~~~~~--------------------~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~-~~~~~~~~~ 342 (450)
...+...... .....+-..|...|.|+.|- |+++++-+.++.|..|.. +-++.+...
T Consensus 211 ~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~v 288 (385)
T KOG1034|consen 211 NVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNV 288 (385)
T ss_pred ChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhcc
Confidence 8544211000 00011223466666677774 789999999999999987 333332222
Q ss_pred CCCCCceeeeccccCCccceEEEEEe----CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEec
Q 041325 343 DDDSGHMVLKGALRGHTKAILCLAVV----SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVD 418 (450)
Q Consensus 343 ~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 418 (450)
..+.........+.-....|+-+.|. .+.|+.|...|.|.+||++..... ......-......|...+|+.|
T Consensus 289 kp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~----~~ttl~~s~~~~tVRQ~sfS~d 364 (385)
T KOG1034|consen 289 KPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP----KCTTLTHSKSGSTVRQTSFSRD 364 (385)
T ss_pred CCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc----cCceEEeccccceeeeeeeccc
Confidence 23333334445555556667666665 459999999999999999974221 1111111223467999999999
Q ss_pred CCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 419 SDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+. +|+..++|++|.-||-
T Consensus 365 gs-------------~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 365 GS-------------ILVLVCDDGTVWRWDR 382 (385)
T ss_pred Cc-------------EEEEEeCCCcEEEEEe
Confidence 99 9999999999999984
No 141
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.93 E-value=1.2e-22 Score=179.70 Aligned_cols=269 Identities=13% Similarity=0.139 Sum_probs=180.9
Q ss_pred CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--E-EEEeCCCeEEEEEcCCCceeE
Q 041325 85 GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--L-FSAHQDHKIRVWKIDNNTSAY 161 (450)
Q Consensus 85 ~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l-~s~~~dg~i~iw~~~~~~~~~ 161 (450)
++.+++++.||.|++||+.+++.... +..+. .+.+++|++++ + ++++.++.|++||..+++.
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~------------~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-- 65 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRT------------FPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-- 65 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEE------------EECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcE--
Confidence 46788999999999999988876554 33343 46789999776 4 5677899999999987632
Q ss_pred EeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE-eCCCcEEEEecC
Q 041325 162 YSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST-SWDRTFKIWRTS 240 (450)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~ 240 (450)
...++ .+. .+..++|+|+++.++++ +.++.|++||+.
T Consensus 66 --------------~~~~~---------------------------~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~ 103 (300)
T TIGR03866 66 --------------IGTLP---------------------------SGP-DPELFALHPNGKILYIANEDDNLVTVIDIE 103 (300)
T ss_pred --------------EEecc---------------------------CCC-CccEEEECCCCCEEEEEcCCCCeEEEEECC
Confidence 11111 121 24568899999877655 568999999999
Q ss_pred CCeEEEEeecccccceEEEEEeecCCcEEEEEcCCC-cEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEE
Q 041325 241 DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADT-KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVL 319 (450)
Q Consensus 241 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l 319 (450)
+.+.+..+. ....+.+++++|++. +++++..++ .+.+||..+.+ ...... ....+..++|+|++++|
T Consensus 104 ~~~~~~~~~--~~~~~~~~~~~~dg~-~l~~~~~~~~~~~~~d~~~~~--------~~~~~~-~~~~~~~~~~s~dg~~l 171 (300)
T TIGR03866 104 TRKVLAEIP--VGVEPEGMAVSPDGK-IVVNTSETTNMAHFIDTKTYE--------IVDNVL-VDQRPRFAEFTADGKEL 171 (300)
T ss_pred CCeEEeEee--CCCCcceEEECCCCC-EEEEEecCCCeEEEEeCCCCe--------EEEEEE-cCCCccEEEECCCCCEE
Confidence 988777765 334568899998554 666666654 56778986554 111111 22345779999999988
Q ss_pred EEe-eCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeE-EEEeCCCeEEEeeCCCCccccCC
Q 041325 320 YSG-ACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLL-FSGSSDNTIRIWRRSSSVTDHQK 395 (450)
Q Consensus 320 ~~g-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l-~s~~~dg~v~iwd~~~~~~~~~~ 395 (450)
+++ ..++.|++||+.+++.+........ ...........++|++ +++ ++.+.++.+.+||.+++
T Consensus 172 ~~~~~~~~~v~i~d~~~~~~~~~~~~~~~------~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~------ 239 (300)
T TIGR03866 172 WVSSEIGGTVSVIDVATRKVIKKITFEIP------GVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTY------ 239 (300)
T ss_pred EEEcCCCCEEEEEEcCcceeeeeeeeccc------ccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCC------
Confidence 655 4699999999998865422111000 0000011223566664 453 44456778999999864
Q ss_pred CceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEc-ccCCcEEEEEeC
Q 041325 396 GYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSG-SLDCEIKIWQIR 450 (450)
Q Consensus 396 ~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~-~~Dg~i~iw~l~ 450 (450)
+....+. +...+.+++|+|+++ +|+++ +.+|.|++||++
T Consensus 240 --~~~~~~~-~~~~~~~~~~~~~g~-------------~l~~~~~~~~~i~v~d~~ 279 (300)
T TIGR03866 240 --EVLDYLL-VGQRVWQLAFTPDEK-------------YLLTTNGVSNDVSVIDVA 279 (300)
T ss_pred --cEEEEEE-eCCCcceEEECCCCC-------------EEEEEcCCCCeEEEEECC
Confidence 3333332 345789999999999 77765 579999999974
No 142
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.2e-23 Score=177.40 Aligned_cols=285 Identities=12% Similarity=0.193 Sum_probs=214.8
Q ss_pred CcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---EEEEeCCCeE
Q 041325 75 SSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---LFSAHQDHKI 149 (450)
Q Consensus 75 ~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i 149 (450)
.+.|++|.| ....|++|+.||.++||.++......+ ..+.--..+|.+.+|.+++ +++++....+
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~l----------qS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ 282 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKL----------QSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYL 282 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhh----------eeeeeccCccceeeecCCCceEEEecccceEE
Confidence 468999999 688999999999999999876543322 1122334689999999876 8999999999
Q ss_pred EEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecC-CCceEEEEEccCCCEEEEE
Q 041325 150 RVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHH-VDTVSALALSSDGSLLYST 228 (450)
Q Consensus 150 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~ 228 (450)
+.||+++.+........ ++ ...+.....++++++|+..
T Consensus 283 ysyDle~ak~~k~~~~~-----------------------------------------g~e~~~~e~FeVShd~~fia~~ 321 (514)
T KOG2055|consen 283 YSYDLETAKVTKLKPPY-----------------------------------------GVEEKSMERFEVSHDSNFIAIA 321 (514)
T ss_pred EEeeccccccccccCCC-----------------------------------------CcccchhheeEecCCCCeEEEc
Confidence 99999887542221111 12 2356778889999999999
Q ss_pred eCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccc--
Q 041325 229 SWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSA-- 306 (450)
Q Consensus 229 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-- 306 (450)
+..|.|.+....+++.+..++ -.+.|..++|+.++ ..|++++.+|.|.+||++... ++..+.. .+.
T Consensus 322 G~~G~I~lLhakT~eli~s~K--ieG~v~~~~fsSds-k~l~~~~~~GeV~v~nl~~~~--------~~~rf~D-~G~v~ 389 (514)
T KOG2055|consen 322 GNNGHIHLLHAKTKELITSFK--IEGVVSDFTFSSDS-KELLASGGTGEVYVWNLRQNS--------CLHRFVD-DGSVH 389 (514)
T ss_pred ccCceEEeehhhhhhhhheee--eccEEeeEEEecCC-cEEEEEcCCceEEEEecCCcc--------eEEEEee-cCccc
Confidence 999999999999999999987 77899999999644 578888888999999998765 4444432 222
Q ss_pred eEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEe--CCCeEE
Q 041325 307 VTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGS--SDNTIR 382 (450)
Q Consensus 307 i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~--~dg~v~ 382 (450)
-++++.++++.+||+|+..|.|-|||..+... .....+...+..-...|+++.|+++ .||.+| .+..+|
T Consensus 390 gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~-------s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalr 462 (514)
T KOG2055|consen 390 GTSLCISLNGSYLATGSDSGIVNIYDGNSCFA-------STNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALR 462 (514)
T ss_pred eeeeeecCCCceEEeccCcceEEEeccchhhc-------cCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceE
Confidence 35677889999999999999999999765321 1122344555556678999999966 555554 567788
Q ss_pred EeeCCCCccccCCCceeEEEec---CCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 383 IWRRSSSVTDHQKGYSCLAVLE---GHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 383 iwd~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+-.+.+- .....+. ..-+.|+|++|+|.+. +||.|..+|.|.+|+|.
T Consensus 463 LVHvPS~--------TVFsNfP~~n~~vg~vtc~aFSP~sG-------------~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 463 LVHVPSC--------TVFSNFPTSNTKVGHVTCMAFSPNSG-------------YLAVGNEAGRVHLFKLH 512 (514)
T ss_pred EEeccce--------eeeccCCCCCCcccceEEEEecCCCc-------------eEEeecCCCceeeEeec
Confidence 8887752 2222222 2335689999999999 99999999999999974
No 143
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=1.5e-23 Score=167.00 Aligned_cols=230 Identities=22% Similarity=0.287 Sum_probs=175.1
Q ss_pred EecCCCceEEEEEeCC---eEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEe
Q 041325 123 ATGNGDAVKSLVVLGD---KLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVR 199 (450)
Q Consensus 123 ~~~h~~~v~~l~~~~~---~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (450)
...|.+.|+++...+. ++++|+.||.|.+||++....... .+- .....|+...
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~--s~l--i~k~~c~v~~-------------------- 94 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEA--SGL--IAKHKCIVAK-------------------- 94 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhh--ccc--eeheeeeccc--------------------
Confidence 4578999999999743 399999999999999987632100 000 0000111011
Q ss_pred ecceeeeecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCC--cEEEEEcCCC
Q 041325 200 RHKKCTWVHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSND--GFVYTGSADT 276 (450)
Q Consensus 200 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg 276 (450)
..-.+|.-.|.++.|-| |.-++.+++.|.++++||.++.+....++ .++.|.+-+++|-.. .++++|..+-
T Consensus 95 ----~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~--me~~VYshamSp~a~sHcLiA~gtr~~ 168 (397)
T KOG4283|consen 95 ----QHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFK--MEGKVYSHAMSPMAMSHCLIAAGTRDV 168 (397)
T ss_pred ----cCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEee--cCceeehhhcChhhhcceEEEEecCCC
Confidence 11125888999999999 77789999999999999999999888886 677888888887443 3688999999
Q ss_pred cEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCC-EEEEeeCCCcEEEEEcCCC-ceeeeCCCCC-Cceeeec
Q 041325 277 KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGT-VLYSGACDRSILVWERDQG-NYIVDGDDDS-GHMVLKG 353 (450)
Q Consensus 277 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~g~~dg~i~vwd~~~~-~~~~~~~~~~-~~~~~~~ 353 (450)
.|++-|+..+. ....+.+|...|.++.|+|... .|++|+.||.|++||++.. -++..++... .......
T Consensus 169 ~VrLCDi~SGs--------~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~ 240 (397)
T KOG4283|consen 169 QVRLCDIASGS--------FSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILK 240 (397)
T ss_pred cEEEEeccCCc--------ceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccc
Confidence 99999998877 7889999999999999999766 5788999999999999865 3333333333 2222333
Q ss_pred cccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCc
Q 041325 354 ALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSV 390 (450)
Q Consensus 354 ~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~ 390 (450)
.-..|.+.|..++|. +.++++++.|..+++|+..+|.
T Consensus 241 ~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 241 TNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 467899999999997 5699999999999999998874
No 144
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.92 E-value=8.8e-24 Score=185.17 Aligned_cols=117 Identities=21% Similarity=0.270 Sum_probs=100.4
Q ss_pred ceEEEEEcC-CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC---CeEEEEeCCCeE
Q 041325 306 AVTALALST-DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS---NLLFSGSSDNTI 381 (450)
Q Consensus 306 ~i~~l~~~~-~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v 381 (450)
.|+.+.|.| |.+.|++++.||.|++|.+..+-.. .....+...+..|...|+++.|++ +.|++++.|.+|
T Consensus 629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~------e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti 702 (1012)
T KOG1445|consen 629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP------ENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTI 702 (1012)
T ss_pred eeeecccCCCChHHeeecccCceEEEEEeccCCCC------cccCCcceeeecccceEEEEEecchhhhHhhhhhcccee
Confidence 367788888 6788999999999999999865322 233445577889999999999994 699999999999
Q ss_pred EEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 382 RIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 382 ~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
++||+.+. +....+.+|++.|.+++|+|+|+ .++|.+.||+|++|+-
T Consensus 703 ~lWDl~~~--------~~~~~l~gHtdqIf~~AWSpdGr-------------~~AtVcKDg~~rVy~P 749 (1012)
T KOG1445|consen 703 ELWDLANA--------KLYSRLVGHTDQIFGIAWSPDGR-------------RIATVCKDGTLRVYEP 749 (1012)
T ss_pred eeeehhhh--------hhhheeccCcCceeEEEECCCCc-------------ceeeeecCceEEEeCC
Confidence 99999975 66778899999999999999999 9999999999999974
No 145
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=2e-23 Score=172.71 Aligned_cols=314 Identities=16% Similarity=0.221 Sum_probs=221.7
Q ss_pred eeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe-CCe-E
Q 041325 65 CSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL-GDK-L 140 (450)
Q Consensus 65 ~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~-l 140 (450)
+.+-+. +|.+.|.++.| ++++|++|+.|..+++|+++..-..+. +....+.-..|...|.|++|. ++. +
T Consensus 48 ~qKD~~--~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~-----~KPI~~~~~~H~SNIF~L~F~~~N~~~ 120 (609)
T KOG4227|consen 48 CQKDVR--EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKT-----PKPIGVMEHPHRSNIFSLEFDLENRFL 120 (609)
T ss_pred hhhhhh--hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcC-----CCCceeccCccccceEEEEEccCCeeE
Confidence 444555 99999999999 799999999999999999864332221 011111223567899999998 333 9
Q ss_pred EEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc
Q 041325 141 FSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS 220 (450)
Q Consensus 141 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 220 (450)
++|+.+++|..-|+++.+..+ ..... ...+.|..+..+|
T Consensus 121 ~SG~~~~~VI~HDiEt~qsi~----------------V~~~~-------------------------~~~~~VY~m~~~P 159 (609)
T KOG4227|consen 121 YSGERWGTVIKHDIETKQSIY----------------VANEN-------------------------NNRGDVYHMDQHP 159 (609)
T ss_pred ecCCCcceeEeeecccceeee----------------eeccc-------------------------CcccceeecccCC
Confidence 999999999999999984322 22110 1334899999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCe-EEEEee-cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhh
Q 041325 221 DGSLLYSTSWDRTFKIWRTSDFR-CLESVK-NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQ 298 (450)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 298 (450)
..+.|++.+.++.|.+||.+... .+..+. .........+.|+|....+|++.+..+.+.+||.+......... ....
T Consensus 160 ~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~-~~~~ 238 (609)
T KOG4227|consen 160 TDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQR-SMFK 238 (609)
T ss_pred CCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhh-hccc
Confidence 88899999999999999998755 222222 12445678899999888899999999999999998755211000 0001
Q ss_pred hHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceee-eCCCCC-CceeeeccccCCccceEEEEEeCC-eEEEE
Q 041325 299 TLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIV-DGDDDS-GHMVLKGALRGHTKAILCLAVVSN-LLFSG 375 (450)
Q Consensus 299 ~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~ 375 (450)
.+......-.++.|+|+|+.|++--....-.+||+.+.++.. ..+.+. +. .....+.++.|.++ .+++|
T Consensus 239 ~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY--------~N~~T~KS~~F~~D~~v~tG 310 (609)
T KOG4227|consen 239 GLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGY--------CNIKTIKSMTFIDDYTVATG 310 (609)
T ss_pred cCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcc--------eeeeeeeeeeeecceeeecc
Confidence 111112233678899999999887777777788988755432 111111 11 11245677888876 78999
Q ss_pred eCCCeEEEeeCCCCccccC---------------CCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEccc
Q 041325 376 SSDNTIRIWRRSSSVTDHQ---------------KGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSL 440 (450)
Q Consensus 376 ~~dg~v~iwd~~~~~~~~~---------------~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~ 440 (450)
+.+-.|++|.+........ -.-+.+..+++|.+-++.+.|+|... +|++.+-
T Consensus 311 SD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~~-------------~l~SSGV 377 (609)
T KOG4227|consen 311 SDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHNN-------------LLVSSGV 377 (609)
T ss_pred CcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCcc-------------eEeccch
Confidence 9999999998864311100 11245678899999999999999998 9999999
Q ss_pred CCcEEEEE
Q 041325 441 DCEIKIWQ 448 (450)
Q Consensus 441 Dg~i~iw~ 448 (450)
...++||.
T Consensus 378 E~~~KlWS 385 (609)
T KOG4227|consen 378 ENSFKLWS 385 (609)
T ss_pred hhheeccc
Confidence 99999995
No 146
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.92 E-value=5.4e-24 Score=186.43 Aligned_cols=302 Identities=20% Similarity=0.305 Sum_probs=199.6
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---EEEEeCCC
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---LFSAHQDH 147 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg 147 (450)
.|...|..+.| -...|++++.|.++++||++...+.... .+.||.+.|.+++|.+.. |++|+.||
T Consensus 98 aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~----------~~~GH~~SvkS~cf~~~n~~vF~tGgRDg 167 (720)
T KOG0321|consen 98 AHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGR----------LNLGHTGSVKSECFMPTNPAVFCTGGRDG 167 (720)
T ss_pred cccceeEeeccCCCceeEEEccCCceeeeeeeccceeecce----------eecccccccchhhhccCCCcceeeccCCC
Confidence 89999999999 5678999999999999999988765431 367999999999999665 99999999
Q ss_pred eEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEE---EEEccCCCE
Q 041325 148 KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSA---LALSSDGSL 224 (450)
Q Consensus 148 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~~~~~~ 224 (450)
.|.|||++-......... ....+......+ ...............+...|.+ +.+..|...
T Consensus 168 ~illWD~R~n~~d~~e~~---~~~~~~~~n~~p-------------tpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~t 231 (720)
T KOG0321|consen 168 EILLWDCRCNGVDALEEF---DNRIYGRHNTAP-------------TPSKPLKKRIRKWKAASNTIFSSVTVVLFKDEST 231 (720)
T ss_pred cEEEEEEeccchhhHHHH---hhhhhccccCCC-------------CCCchhhccccccccccCceeeeeEEEEEeccce
Confidence 999999986531100000 000000000000 0001111222233445555555 556677888
Q ss_pred EEEEeC-CCcEEEEecCCCeEEEEeec-------cc---ccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc
Q 041325 225 LYSTSW-DRTFKIWRTSDFRCLESVKN-------AH---DDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 225 l~~~~~-dg~i~iwd~~~~~~~~~~~~-------~~---~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 293 (450)
|++++. |+.|++||++.......... .+ ...+.++.....+. ++++.+.|+.|++||+..-.
T Consensus 232 laSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt-~L~AsCtD~sIy~ynm~s~s------ 304 (720)
T KOG0321|consen 232 LASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT-YLFASCTDNSIYFYNMRSLS------ 304 (720)
T ss_pred eeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC-eEEEEecCCcEEEEeccccC------
Confidence 888887 99999999987654433221 11 23456666655444 55555569999999997644
Q ss_pred chhhhhHhhcccc--eEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-
Q 041325 294 HSLVQTLEKHKSA--VTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN- 370 (450)
Q Consensus 294 ~~~~~~~~~~~~~--i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 370 (450)
..++..+.++... -..-..+|++.++++|+.|...++|.+.+.+. ....+.+|...|+++.|.+.
T Consensus 305 ~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~------------~~~~l~Ght~eVt~V~w~pS~ 372 (720)
T KOG0321|consen 305 ISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA------------PPALLLGHTREVTTVRWLPSA 372 (720)
T ss_pred cCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC------------ChhhhhCcceEEEEEeecccc
Confidence 2234444433221 12234688999999999999999999986542 33577899999999999854
Q ss_pred --eEEEEeCCCeEEEeeCCCCcccc------CCCceeEEEecCCCcceEEEEEEecC
Q 041325 371 --LLFSGSSDNTIRIWRRSSSVTDH------QKGYSCLAVLEGHRRPVKCLTAVVDS 419 (450)
Q Consensus 371 --~l~s~~~dg~v~iwd~~~~~~~~------~~~~~~~~~~~~h~~~v~~l~~~~~~ 419 (450)
-+++++.|.++++|++..+.... .........+++|.-.+..+.++-.+
T Consensus 373 ~t~v~TcSdD~~~kiW~l~~~l~e~~~adk~s~v~~~~~rfk~~~p~~~nv~ss~~~ 429 (720)
T KOG0321|consen 373 TTPVATCSDDFRVKIWRLSNGLEEIYAADKDSIVYEYSRRFKGHLPQVLNVNSSLRK 429 (720)
T ss_pred CCCceeeccCcceEEEeccCchhhccccccchhhhhhhhhhhccccccccccccccc
Confidence 78888999999999997654322 11122334456666666555555433
No 147
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=7.2e-25 Score=194.52 Aligned_cols=228 Identities=21% Similarity=0.408 Sum_probs=195.2
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCe
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHK 148 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~ 148 (450)
.|...|.|+.. .++.+++|+.|..+-+|....-..+.. +.+|..+|.+|.|+... |++|+.+|+
T Consensus 26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S------------~~~hespIeSl~f~~~E~Llaagsasgt 93 (825)
T KOG0267|consen 26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITS------------LTGHESPIESLTFDTSERLLAAGSASGT 93 (825)
T ss_pred hhhhhhceeeeeccceeeccCCCceeeccccccCCchhhe------------eeccCCcceeeecCcchhhhcccccCCc
Confidence 78999999987 789999999999999998766554333 78999999999999666 889999999
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST 228 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 228 (450)
|++||++.. +....+.+|...+..+.|+|-+.+++.|
T Consensus 94 iK~wDleeA-------------------------------------------k~vrtLtgh~~~~~sv~f~P~~~~~a~g 130 (825)
T KOG0267|consen 94 IKVWDLEEA-------------------------------------------KIVRTLTGHLLNITSVDFHPYGEFFASG 130 (825)
T ss_pred eeeeehhhh-------------------------------------------hhhhhhhccccCcceeeeccceEEeccc
Confidence 999999977 2333555899999999999999999999
Q ss_pred eCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceE
Q 041325 229 SWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVT 308 (450)
Q Consensus 229 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 308 (450)
+.|..+++||.+...|...+. +|...+..+.|.|+ +.+++.++.|..+++||...++ ....|..|...+.
T Consensus 131 Stdtd~~iwD~Rk~Gc~~~~~-s~~~vv~~l~lsP~-Gr~v~~g~ed~tvki~d~~agk--------~~~ef~~~e~~v~ 200 (825)
T KOG0267|consen 131 STDTDLKIWDIRKKGCSHTYK-SHTRVVDVLRLSPD-GRWVASGGEDNTVKIWDLTAGK--------LSKEFKSHEGKVQ 200 (825)
T ss_pred cccccceehhhhccCceeeec-CCcceeEEEeecCC-CceeeccCCcceeeeecccccc--------ccccccccccccc
Confidence 999999999999888999998 69999999999994 4499999999999999998877 8889999999999
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCC
Q 041325 309 ALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSD 378 (450)
Q Consensus 309 ~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~d 378 (450)
.+.|+|..-+++.|+.|+++++||+++-+.+ .........|.+..|+++ .+++|..+
T Consensus 201 sle~hp~e~Lla~Gs~d~tv~f~dletfe~I-------------~s~~~~~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 201 SLEFHPLEVLLAPGSSDRTVRFWDLETFEVI-------------SSGKPETDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ccccCchhhhhccCCCCceeeeeccceeEEe-------------eccCCccCCceeeeecCCceeeecCchh
Confidence 9999999999999999999999999976644 334444677889999865 44444443
No 148
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.6e-22 Score=160.64 Aligned_cols=289 Identities=17% Similarity=0.251 Sum_probs=199.2
Q ss_pred eeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--
Q 041325 64 QCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 139 (450)
++-.+|. |.. -.|+.| .|.+||.|+.||.|.|||+.+...... +.+|..+|.+++|++++
T Consensus 16 el~~tld---~~~-a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~------------lsaH~~pi~sl~WS~dgr~ 79 (405)
T KOG1273|consen 16 ELTHTLD---NPL-AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARM------------LSAHVRPITSLCWSRDGRK 79 (405)
T ss_pred hhceecc---CCc-cceEEeccCcceeeeeccCCcEEEEEccccchhhh------------hhccccceeEEEecCCCCE
Confidence 4555665 333 788888 599999999999999999998875555 78999999999999887
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS 219 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (450)
|++++.|..|.+||+..+.. +..+ ....+|..+.|+
T Consensus 80 LltsS~D~si~lwDl~~gs~----------------l~ri----------------------------rf~spv~~~q~h 115 (405)
T KOG1273|consen 80 LLTSSRDWSIKLWDLLKGSP----------------LKRI----------------------------RFDSPVWGAQWH 115 (405)
T ss_pred eeeecCCceeEEEeccCCCc----------------eeEE----------------------------EccCccceeeec
Confidence 99999999999999998843 2222 144589999999
Q ss_pred cC-CCEEEEEeCCCcEEEEecCCCeEEEEee-ccccc----ceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc
Q 041325 220 SD-GSLLYSTSWDRTFKIWRTSDFRCLESVK-NAHDD----AINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 220 ~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~----~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 293 (450)
|. .+.+++.-.+..-.+-++..++ +.+. ....+ ...+..|.+ .++++++|...|.+.++|..+.+
T Consensus 116 p~k~n~~va~~~~~sp~vi~~s~~~--h~~Lp~d~d~dln~sas~~~fdr-~g~yIitGtsKGkllv~~a~t~e------ 186 (405)
T KOG1273|consen 116 PRKRNKCVATIMEESPVVIDFSDPK--HSVLPKDDDGDLNSSASHGVFDR-RGKYIITGTSKGKLLVYDAETLE------ 186 (405)
T ss_pred cccCCeEEEEEecCCcEEEEecCCc--eeeccCCCccccccccccccccC-CCCEEEEecCcceEEEEecchhe------
Confidence 93 3344444334444455554422 2211 01111 112224555 45599999999999999997765
Q ss_pred chhhhhHhhcc-cceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccC--CccceEEEEEe--
Q 041325 294 HSLVQTLEKHK-SAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG--HTKAILCLAVV-- 368 (450)
Q Consensus 294 ~~~~~~~~~~~-~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~-- 368 (450)
++..++... ..|..+.++..|+.|+.-+.|..|+.|++..--.. .......+.+.+.. ....=.++.|+
T Consensus 187 --~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~----~r~~e~e~~~K~qDvVNk~~Wk~ccfs~d 260 (405)
T KOG1273|consen 187 --CVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDE----GRDGEVEPEHKLQDVVNKLQWKKCCFSGD 260 (405)
T ss_pred --eeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhccc----CccCCcChhHHHHHHHhhhhhhheeecCC
Confidence 555555444 67889999999999999999999999998731100 00011111111110 01111455565
Q ss_pred CCeEEEEeC-CCeEEEeeCCCCccccCCCceeEEEecCCC-cceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEE
Q 041325 369 SNLLFSGSS-DNTIRIWRRSSSVTDHQKGYSCLAVLEGHR-RPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKI 446 (450)
Q Consensus 369 ~~~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~i 446 (450)
|.|+++++. -..++||....| .+++.+.|.. .....+.|+|-.. .+++- ..|.|++
T Consensus 261 geYv~a~s~~aHaLYIWE~~~G--------sLVKILhG~kgE~l~DV~whp~rp-------------~i~si-~sg~v~i 318 (405)
T KOG1273|consen 261 GEYVCAGSARAHALYIWEKSIG--------SLVKILHGTKGEELLDVNWHPVRP-------------IIASI-ASGVVYI 318 (405)
T ss_pred ccEEEeccccceeEEEEecCCc--------ceeeeecCCchhheeeccccccee-------------eeeec-cCCceEE
Confidence 447766663 456999998875 7888888877 5678899999988 77777 7889999
Q ss_pred EEe
Q 041325 447 WQI 449 (450)
Q Consensus 447 w~l 449 (450)
|..
T Consensus 319 w~~ 321 (405)
T KOG1273|consen 319 WAV 321 (405)
T ss_pred EEe
Confidence 975
No 149
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.91 E-value=2e-23 Score=163.62 Aligned_cols=296 Identities=17% Similarity=0.244 Sum_probs=199.4
Q ss_pred eeeeEEeecCCCcceEEEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEe-cCCCceEEEEEeCCe-E
Q 041325 64 QCSATLKVKGNSSYIPSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVAT-GNGDAVKSLVVLGDK-L 140 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~-l 140 (450)
.+...|+ +|.+.|+++.| ...+|.+|..-|.|++|++.+...... +. .|...|+.+...++. +
T Consensus 5 dP~fvLR--p~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~------------~r~~g~~~it~lq~~p~d~l 70 (323)
T KOG0322|consen 5 DPFFVLR--PHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPL------------IRLFGRLFITNLQSIPNDSL 70 (323)
T ss_pred CCeeEec--cccchheehhhccchhhhcccccceEEEEEeecCccchh------------hhhhccceeeceeecCCcch
Confidence 4556677 99999999999 467799999999999999998775544 33 567789999988744 9
Q ss_pred EEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc
Q 041325 141 FSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS 220 (450)
Q Consensus 141 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 220 (450)
.+-+.|+.+.+|++....... + |+-.++++-|.+
T Consensus 71 ~tqgRd~~L~lw~ia~s~~i~--------------i--------------------------------~Si~~nslgFCr 104 (323)
T KOG0322|consen 71 DTQGRDPLLILWTIAYSAFIS--------------I--------------------------------HSIVVNSLGFCR 104 (323)
T ss_pred hhcCCCceEEEEEccCcceEE--------------E--------------------------------eeeecccccccc
Confidence 999999999999998753211 1 111122222211
Q ss_pred -----CC----CEEEEEeCC-CcEEEEecCCCeEEEEee---cccccceEEEEEeecCCc--EEEEEcCCCcEEEEeCcc
Q 041325 221 -----DG----SLLYSTSWD-RTFKIWRTSDFRCLESVK---NAHDDAINAIVVSKSNDG--FVYTGSADTKIKVWKKLR 285 (450)
Q Consensus 221 -----~~----~~l~~~~~d-g~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~ 285 (450)
++ ..++.-+.. ..+++-|......+.... ....+.+++..+...... ++++|..+|.+.+||+.+
T Consensus 105 fSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~ 184 (323)
T KOG0322|consen 105 FSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLST 184 (323)
T ss_pred ceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccC
Confidence 00 011111100 012223332222222221 133456777664432222 588899999999999987
Q ss_pred hhh--hccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceE
Q 041325 286 AAL--QVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAIL 363 (450)
Q Consensus 286 ~~~--~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 363 (450)
+.. +....++.......|..++.++.|.+.-..=++|+.+..+..|.+.... ..+.......-.+..|.
T Consensus 185 ~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~---------gslq~~~e~~lknpGv~ 255 (323)
T KOG0322|consen 185 GDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHST---------GSLQIRKEITLKNPGVS 255 (323)
T ss_pred CceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeecccc---------CcccccceEEecCCCcc
Confidence 521 1122334555566799999999998866667788888899999987431 11111122222223343
Q ss_pred --EEEEeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccC
Q 041325 364 --CLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLD 441 (450)
Q Consensus 364 --~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~D 441 (450)
.|..+++.+||+++|++||||..++. .++..++.|...|++++|+|+.. ++|++|.|
T Consensus 256 gvrIRpD~KIlATAGWD~RiRVyswrtl--------~pLAVLkyHsagvn~vAfspd~~-------------lmAaaskD 314 (323)
T KOG0322|consen 256 GVRIRPDGKILATAGWDHRIRVYSWRTL--------NPLAVLKYHSAGVNAVAFSPDCE-------------LMAAASKD 314 (323)
T ss_pred ceEEccCCcEEeecccCCcEEEEEeccC--------CchhhhhhhhcceeEEEeCCCCc-------------hhhhccCC
Confidence 44455679999999999999999984 78999999999999999999988 99999999
Q ss_pred CcEEEEEe
Q 041325 442 CEIKIWQI 449 (450)
Q Consensus 442 g~i~iw~l 449 (450)
+.|.+|+|
T Consensus 315 ~rISLWkL 322 (323)
T KOG0322|consen 315 ARISLWKL 322 (323)
T ss_pred ceEEeeec
Confidence 99999997
No 150
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=1.1e-23 Score=179.54 Aligned_cols=235 Identities=21% Similarity=0.360 Sum_probs=188.8
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCe
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHK 148 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~ 148 (450)
.-...|+++.. ||+.|++|+.-.++.|||+.........+ +....-.+.+++.++|. .+++..||.
T Consensus 463 ~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikae----------ltssapaCyALa~spDakvcFsccsdGn 532 (705)
T KOG0639|consen 463 NRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAE----------LTSSAPACYALAISPDAKVCFSCCSDGN 532 (705)
T ss_pred CcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhh----------cCCcchhhhhhhcCCccceeeeeccCCc
Confidence 34556666666 89999999999999999998655322111 22333467888889887 888999999
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST 228 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 228 (450)
|.|||+.+.. .+..+.+|.+.+.||.++++|..|.+|
T Consensus 533 I~vwDLhnq~-------------------------------------------~VrqfqGhtDGascIdis~dGtklWTG 569 (705)
T KOG0639|consen 533 IAVWDLHNQT-------------------------------------------LVRQFQGHTDGASCIDISKDGTKLWTG 569 (705)
T ss_pred EEEEEcccce-------------------------------------------eeecccCCCCCceeEEecCCCceeecC
Confidence 9999999872 334556899999999999999999999
Q ss_pred eCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceE
Q 041325 229 SWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVT 308 (450)
Q Consensus 229 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 308 (450)
+-|++||.||+++++.+.... ....|.++..+|.++ ++++|-.++.+.+......+ ...+..|++.|.
T Consensus 570 GlDntvRcWDlregrqlqqhd--F~SQIfSLg~cP~~d-WlavGMens~vevlh~skp~---------kyqlhlheScVL 637 (705)
T KOG0639|consen 570 GLDNTVRCWDLREGRQLQQHD--FSSQIFSLGYCPTGD-WLAVGMENSNVEVLHTSKPE---------KYQLHLHESCVL 637 (705)
T ss_pred CCccceeehhhhhhhhhhhhh--hhhhheecccCCCcc-ceeeecccCcEEEEecCCcc---------ceeecccccEEE
Confidence 999999999999998877664 678999999999555 99999999999998865443 445667899999
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeC
Q 041325 309 ALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRR 386 (450)
Q Consensus 309 ~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~ 386 (450)
++.|.+.|+++++.+.|..+-.|...-|..++ .. .....|+++..+ ..+|+||+.|....+|.+
T Consensus 638 SlKFa~cGkwfvStGkDnlLnawrtPyGasiF-------------qs-kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 638 SLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF-------------QS-KESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred EEEecccCceeeecCchhhhhhccCcccccee-------------ec-cccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 99999999999999999999999998776553 11 224566666655 569999999998888865
No 151
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=6.6e-22 Score=180.56 Aligned_cols=247 Identities=18% Similarity=0.204 Sum_probs=192.2
Q ss_pred ecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeec
Q 041325 124 TGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRH 201 (450)
Q Consensus 124 ~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (450)
.+|....+.|+|.+++ |++++.||.|++|+......
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e------------------------------------------ 47 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEE------------------------------------------ 47 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCccc------------------------------------------
Confidence 4788899999999777 99999999999999776510
Q ss_pred ceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEE
Q 041325 202 KKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVW 281 (450)
Q Consensus 202 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw 281 (450)
....+.-+...|.+++.. +.+|++|+.+++|.+|.+.+++.-..+. ...-++.+++++.+ +.+++.|+.|-.|++.
T Consensus 48 ~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~~~~iL~-Rftlp~r~~~v~g~-g~~iaagsdD~~vK~~ 123 (933)
T KOG1274|consen 48 EPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGEEDTILA-RFTLPIRDLAVSGS-GKMIAAGSDDTAVKLL 123 (933)
T ss_pred CCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCCccceee-eeeccceEEEEecC-CcEEEeecCceeEEEE
Confidence 000000145567666654 5589999999999999999887655554 56678999999963 4489999999999999
Q ss_pred eCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccc
Q 041325 282 KKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA 361 (450)
Q Consensus 282 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (450)
++.+.. ....+.+|.++|.++.|+|++++||+.+.||.|++||+.++.....+..-..... ......
T Consensus 124 ~~~D~s--------~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~-----~~~s~i 190 (933)
T KOG1274|consen 124 NLDDSS--------QEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNE-----FILSRI 190 (933)
T ss_pred eccccc--------hheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCcccc-----ccccce
Confidence 987665 7788899999999999999999999999999999999998876543322111100 011455
Q ss_pred eEEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEe--cCCCcceEEEEEEecCCCCCCCCCCCCceEEEEE
Q 041325 362 ILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVL--EGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYS 437 (450)
Q Consensus 362 v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s 437 (450)
+..++|+++ .++..+.|+.|++|+.... .....+ ..+...+..++|+|+|+ |||+
T Consensus 191 ~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~w--------e~~f~Lr~~~~ss~~~~~~wsPnG~-------------YiAA 249 (933)
T KOG1274|consen 191 CTRLAWHPKGGTLAVPPVDNTVKVYSRKGW--------ELQFKLRDKLSSSKFSDLQWSPNGK-------------YIAA 249 (933)
T ss_pred eeeeeecCCCCeEEeeccCCeEEEEccCCc--------eeheeecccccccceEEEEEcCCCc-------------EEee
Confidence 678899966 8888889999999998863 444444 33445599999999999 9999
Q ss_pred cccCCcEEEEEeC
Q 041325 438 GSLDCEIKIWQIR 450 (450)
Q Consensus 438 ~~~Dg~i~iw~l~ 450 (450)
++.||.|.|||++
T Consensus 250 s~~~g~I~vWnv~ 262 (933)
T KOG1274|consen 250 STLDGQILVWNVD 262 (933)
T ss_pred eccCCcEEEEecc
Confidence 9999999999974
No 152
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.90 E-value=3.9e-22 Score=161.01 Aligned_cols=280 Identities=19% Similarity=0.234 Sum_probs=201.6
Q ss_pred EEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCC-CCcceeEEecCCCceEEEEEe-------CCe--EEEEeCC
Q 041325 79 PSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDV-GDHANVVATGNGDAVKSLVVL-------GDK--LFSAHQD 146 (450)
Q Consensus 79 ~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~l~~~-------~~~--l~s~~~d 146 (450)
..+.| ||.-|++-+.|..+++|++.......-..... .......-......|...+|. |+. +++.+.|
T Consensus 53 kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~ 132 (406)
T KOG2919|consen 53 KGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRD 132 (406)
T ss_pred ccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecccc
Confidence 34556 89999999999999999986543222111111 111112223445678888886 333 7888889
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCC---ceEEEEEccCCC
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVD---TVSALALSSDGS 223 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~v~~~~~~~~~~ 223 (450)
.-|++||.-+++.... .. ...|.+ ...+++|+|||.
T Consensus 133 ~PIh~wdaftG~lraS----------------y~-------------------------~ydh~de~taAhsL~Fs~DGe 171 (406)
T KOG2919|consen 133 QPIHLWDAFTGKLRAS----------------YR-------------------------AYDHQDEYTAAHSLQFSPDGE 171 (406)
T ss_pred Cceeeeeccccccccc----------------hh-------------------------hhhhHHhhhhheeEEecCCCC
Confidence 9999999998843110 00 012332 456899999999
Q ss_pred EEEEEeCCCcEEEEec-CCCeEEEEe------ecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchh
Q 041325 224 LLYSTSWDRTFKIWRT-SDFRCLESV------KNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSL 296 (450)
Q Consensus 224 ~l~~~~~dg~i~iwd~-~~~~~~~~~------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 296 (450)
+|++|. ...|+++|+ +.|+..... +.+..+-+.+++++|...+.++.|+....+-||.-.... +
T Consensus 172 qlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~--------p 242 (406)
T KOG2919|consen 172 QLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRR--------P 242 (406)
T ss_pred eEeecc-cceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCC--------c
Confidence 999876 689999999 444322211 113467789999999888899999999999999865544 7
Q ss_pred hhhHhhcccceEEEEEcCCCCEEEEeeC-CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCcc-ceEEEEEe----CC
Q 041325 297 VQTLEKHKSAVTALALSTDGTVLYSGAC-DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK-AILCLAVV----SN 370 (450)
Q Consensus 297 ~~~~~~~~~~i~~l~~~~~~~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~----~~ 370 (450)
+..+.+|.+.|+.++|.++|+.|++|.. |-.|..||++..+.. ...+..|.. .-..|-|+ ++
T Consensus 243 l~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p------------v~~L~rhv~~TNQRI~FDld~~~~ 310 (406)
T KOG2919|consen 243 LQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP------------VYALERHVGDTNQRILFDLDPKGE 310 (406)
T ss_pred eeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch------------hhhhhhhccCccceEEEecCCCCc
Confidence 7888899999999999999999999986 678999999965422 244555544 22334444 67
Q ss_pred eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEccc
Q 041325 371 LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSL 440 (450)
Q Consensus 371 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~ 440 (450)
+|++|+.||.|++||++.. ...+..+..|...|+.++++|--. +++|++.
T Consensus 311 ~LasG~tdG~V~vwdlk~~-------gn~~sv~~~~sd~vNgvslnP~mp-------------ilatssG 360 (406)
T KOG2919|consen 311 ILASGDTDGSVRVWDLKDL-------GNEVSVTGNYSDTVNGVSLNPIMP-------------ILATSSG 360 (406)
T ss_pred eeeccCCCccEEEEecCCC-------CCcccccccccccccceecCcccc-------------eeeeccC
Confidence 9999999999999999863 245667788999999999999977 7777764
No 153
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.90 E-value=3e-22 Score=170.61 Aligned_cols=260 Identities=14% Similarity=0.152 Sum_probs=198.8
Q ss_pred eEEEEEe-CCEEEEe--eCCCcEEEecCCCCC--ceeeeecCCCCcceeEEecCCC-ceEEEEEeCCeEEEEeCCCeEEE
Q 041325 78 IPSLAIA-GKLLYGG--SSNGEIRAWNRDPNN--YVNITSTDVGDHANVVATGNGD-AVKSLVVLGDKLFSAHQDHKIRV 151 (450)
Q Consensus 78 v~~~~~d-~~~l~tg--s~dg~v~vw~~~~~~--~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~l~s~~~dg~i~i 151 (450)
+.++.|+ .++|+++ +.|..|++|.-.... .... . ...+... .|.+..++ -++++|+..+.|+|
T Consensus 37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~-~---------k~~gd~~~Cv~~~s~S-~y~~sgG~~~~Vki 105 (673)
T KOG4378|consen 37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRV-R---------KLTGDNAFCVACASQS-LYEISGGQSGCVKI 105 (673)
T ss_pred ceeeeccccceEEEeecCCceeEEEecccCCCCcccee-e---------ccccchHHHHhhhhcc-eeeeccCcCceeee
Confidence 8888883 4445554 467789999754431 1111 0 0112211 22333333 44999999999999
Q ss_pred EEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCC
Q 041325 152 WKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWD 231 (450)
Q Consensus 152 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 231 (450)
||++.. .+ ...+.+|.+.|+++.++-...+|++++..
T Consensus 106 wdl~~k----------------l~---------------------------hr~lkdh~stvt~v~YN~~DeyiAsvs~g 142 (673)
T KOG4378|consen 106 WDLRAK----------------LI---------------------------HRFLKDHQSTVTYVDYNNTDEYIASVSDG 142 (673)
T ss_pred hhhHHH----------------HH---------------------------hhhccCCcceeEEEEecCCcceeEEeccC
Confidence 999865 11 22334799999999999999999999999
Q ss_pred CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEE
Q 041325 232 RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALA 311 (450)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 311 (450)
|.|.|..+.++.....+.......|.-+.+++....+|.+++.+|.|.+||+.... +.....+.|..+...|+
T Consensus 143 Gdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~s-------p~~~~~~~HsAP~~gic 215 (673)
T KOG4378|consen 143 GDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMS-------PIFHASEAHSAPCRGIC 215 (673)
T ss_pred CcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCC-------cccchhhhccCCcCcce
Confidence 99999999999988888856667788999999888789999999999999986543 24455677999999999
Q ss_pred EcC-CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEEeeCCC
Q 041325 312 LST-DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 312 ~~~-~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~ 388 (450)
|+| +..+|++.+.|..|.+||....+.. .......+..+++|.+ -+|++|...|.|..||++.
T Consensus 216 fspsne~l~vsVG~Dkki~~yD~~s~~s~--------------~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~ 281 (673)
T KOG4378|consen 216 FSPSNEALLVSVGYDKKINIYDIRSQAST--------------DRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS 281 (673)
T ss_pred ecCCccceEEEecccceEEEeeccccccc--------------ceeeecCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence 999 5568889999999999999865422 1223456778888874 4999999999999999997
Q ss_pred CccccCCCceeEEEecCCCcceEEEEEEecC
Q 041325 389 SVTDHQKGYSCLAVLEGHRRPVKCLTAVVDS 419 (450)
Q Consensus 389 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 419 (450)
. ..++..+..|...|++++|-+..
T Consensus 282 ~-------k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 282 T-------KAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred C-------CCCceEeeecccceeEEEeeecc
Confidence 4 46788899999999999999874
No 154
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.90 E-value=3.3e-21 Score=153.26 Aligned_cols=290 Identities=17% Similarity=0.238 Sum_probs=206.6
Q ss_pred CEEEEee----CCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---EEEEeCC-------CeEEE
Q 041325 86 KLLYGGS----SNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---LFSAHQD-------HKIRV 151 (450)
Q Consensus 86 ~~l~tgs----~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~d-------g~i~i 151 (450)
-.+++|. .|+.|.+-+++.+.-... .-.+..|.+.|+.|+-+|.. |+++..+ -.+.|
T Consensus 27 icFlvgTnslK~dNqVhll~~d~e~s~l~---------skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aai 97 (370)
T KOG1007|consen 27 ICFLVGTNSLKEDNQVHLLRLDSEGSELL---------SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAI 97 (370)
T ss_pred eEEEEeccccCCcceeEEEEecCccchhh---------hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEE
Confidence 3455554 367777777665432111 11356788999999988655 5555432 23678
Q ss_pred EEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCC
Q 041325 152 WKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWD 231 (450)
Q Consensus 152 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 231 (450)
|.+...... .....++++..++. .+-+.|.|+.|.|++..+++-. |
T Consensus 98 w~ipe~~~~-------S~~~tlE~v~~Ldt--------------------------eavg~i~cvew~Pns~klasm~-d 143 (370)
T KOG1007|consen 98 WQIPEPLGQ-------SNSSTLECVASLDT--------------------------EAVGKINCVEWEPNSDKLASMD-D 143 (370)
T ss_pred EecccccCc-------cccchhhHhhcCCH--------------------------HHhCceeeEEEcCCCCeeEEec-c
Confidence 988765221 11111223333321 3556899999999999988776 8
Q ss_pred CcEEEEecCCCeE-EEEee----cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccc
Q 041325 232 RTFKIWRTSDFRC-LESVK----NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSA 306 (450)
Q Consensus 232 g~i~iwd~~~~~~-~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 306 (450)
..|.+|++.++.. +..+. ..+....++-+|+|..++..+....|+++..||+++.+. ....-..|...
T Consensus 144 n~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~-------~~sI~dAHgq~ 216 (370)
T KOG1007|consen 144 NNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKK-------NNSIEDAHGQR 216 (370)
T ss_pred CceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhh-------hcchhhhhcce
Confidence 8999999998765 33332 234566788899997777777777899999999987651 23334568888
Q ss_pred eEEEEEcCCCC-EEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC---CeEEEEeCCCeEE
Q 041325 307 VTALALSTDGT-VLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS---NLLFSGSSDNTIR 382 (450)
Q Consensus 307 i~~l~~~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~ 382 (450)
+..+.|+|+.+ +|++|+.||.|++||.+..+. +...+.+|...|.++.|++ ++|++|+.|..|.
T Consensus 217 vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~------------pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~ 284 (370)
T KOG1007|consen 217 VRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKF------------PVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVN 284 (370)
T ss_pred eeeccCCCCceEEEEEcCCCccEEEEeccCCCc------------cccccCCCceEEEEEEecCccceEEEecCCCceeE
Confidence 99999999765 678899999999999997553 4578899999999999985 4999999999999
Q ss_pred EeeCCCCcccc----------------C-----CCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccC
Q 041325 383 IWRRSSSVTDH----------------Q-----KGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLD 441 (450)
Q Consensus 383 iwd~~~~~~~~----------------~-----~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~D 441 (450)
+|...+-.... . -.-..+.++..|...|.+++|+.-... ++|+-|.|
T Consensus 285 Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPW------------iFASLSYD 352 (370)
T KOG1007|consen 285 LSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPW------------IFASLSYD 352 (370)
T ss_pred EEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCe------------eEEEeccC
Confidence 99765432110 0 112345578889999999999998885 88999999
Q ss_pred CcEEEEEe
Q 041325 442 CEIKIWQI 449 (450)
Q Consensus 442 g~i~iw~l 449 (450)
|.+.|=.+
T Consensus 353 GRviIs~V 360 (370)
T KOG1007|consen 353 GRVIISSV 360 (370)
T ss_pred ceEEeecC
Confidence 99887443
No 155
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=1.1e-20 Score=167.03 Aligned_cols=274 Identities=12% Similarity=0.147 Sum_probs=180.0
Q ss_pred CCCccceeeeEEeecCCCcceEEEEE--eCCEE-EEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEE
Q 041325 58 PAASEHQCSATLKVKGNSSYIPSLAI--AGKLL-YGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLV 134 (450)
Q Consensus 58 ~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l-~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 134 (450)
+...++++++.+. +|.. +.+++| |++.+ ++++.++.|++||..+++.... +..+. .+..++
T Consensus 16 ~d~~t~~~~~~~~--~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~------------~~~~~-~~~~~~ 79 (300)
T TIGR03866 16 IDTATLEVTRTFP--VGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGT------------LPSGP-DPELFA 79 (300)
T ss_pred EECCCCceEEEEE--CCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEe------------ccCCC-CccEEE
Confidence 3344566777777 5544 667888 67766 6777899999999988775443 22222 346778
Q ss_pred EeCCe--EE-EEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCC
Q 041325 135 VLGDK--LF-SAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVD 211 (450)
Q Consensus 135 ~~~~~--l~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (450)
|+++. ++ +++.|+.|++||+.+... +..++ +..
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~----------------~~~~~----------------------------~~~ 115 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETRKV----------------LAEIP----------------------------VGV 115 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCeE----------------EeEee----------------------------CCC
Confidence 88765 44 455689999999987622 11111 122
Q ss_pred ceEEEEEccCCCEEEEEeCCC-cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc
Q 041325 212 TVSALALSSDGSLLYSTSWDR-TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 290 (450)
.+.+++|+|++++++++..++ .+.+||..+++....+. ....+..+.|++++..+++++..++.|++||+++++...
T Consensus 116 ~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~ 193 (300)
T TIGR03866 116 EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL--VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIK 193 (300)
T ss_pred CcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE--cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeee
Confidence 457799999999999988765 56778998887766554 234567889998655444566679999999998765211
Q ss_pred cccchhhhhHhhcccceEEEEEcCCCCEEEEe-eCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSG-ACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS 369 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 369 (450)
..... .............++|+|++++++++ ..++.|.+||.++++... .. .+...+.+++|++
T Consensus 194 ~~~~~-~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~-------------~~-~~~~~~~~~~~~~ 258 (300)
T TIGR03866 194 KITFE-IPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLD-------------YL-LVGQRVWQLAFTP 258 (300)
T ss_pred eeeec-ccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEE-------------EE-EeCCCcceEEECC
Confidence 00000 00000011224568899999986554 456789999998776441 11 1234678888874
Q ss_pred --CeEEEE-eCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEe
Q 041325 370 --NLLFSG-SSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVV 417 (450)
Q Consensus 370 --~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 417 (450)
++|+++ ..+|.|++||++++ +++..+... ...+.++++|
T Consensus 259 ~g~~l~~~~~~~~~i~v~d~~~~--------~~~~~~~~~-~~~~~~~~~~ 300 (300)
T TIGR03866 259 DEKYLLTTNGVSNDVSVIDVAAL--------KVIKSIKVG-RLPWGVVVRP 300 (300)
T ss_pred CCCEEEEEcCCCCeEEEEECCCC--------cEEEEEEcc-cccceeEeCC
Confidence 477765 56899999999974 566666544 4457777754
No 156
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=9.3e-21 Score=147.11 Aligned_cols=291 Identities=13% Similarity=0.160 Sum_probs=193.8
Q ss_pred eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEe
Q 041325 84 AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYS 163 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 163 (450)
.+++|++|..+|.|-+..+....-.. ....+....+...+|.++|+.++|..+.|++|+. |.|+-|..+......-
T Consensus 21 ~~~~l~agn~~G~iav~sl~sl~s~s--a~~~gk~~iv~eqahdgpiy~~~f~d~~Lls~gd-G~V~gw~W~E~~es~~- 96 (325)
T KOG0649|consen 21 SKQYLFAGNLFGDIAVLSLKSLDSGS--AEPPGKLKIVPEQAHDGPIYYLAFHDDFLLSGGD-GLVYGWEWNEEEESLA- 96 (325)
T ss_pred cceEEEEecCCCeEEEEEehhhhccc--cCCCCCcceeeccccCCCeeeeeeehhheeeccC-ceEEEeeehhhhhhcc-
Confidence 68999999999999999886533211 1223334445568999999999999887888775 9999999876532100
Q ss_pred ccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCe
Q 041325 164 TSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFR 243 (450)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 243 (450)
...+.....+ ...-.-..-.|+++-..|..+-++.++.|+.++-||+++|+
T Consensus 97 ---------~K~lwe~~~P--------------------~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~ 147 (325)
T KOG0649|consen 97 ---------TKRLWEVKIP--------------------MQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGR 147 (325)
T ss_pred ---------chhhhhhcCc--------------------cccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCE
Confidence 0000000000 00000112268999999976666666689999999999999
Q ss_pred EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccc-cchhhhhHhhc-ccceEEEEEcCCCCEEEE
Q 041325 244 CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNK-KHSLVQTLEKH-KSAVTALALSTDGTVLYS 321 (450)
Q Consensus 244 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~-~~~i~~l~~~~~~~~l~~ 321 (450)
....++ +|.+.+.++.-.. ....+++|+.||++|+||.++.++.... ..+....+..| ...|-+++- +..+|++
T Consensus 148 i~r~~r-GHtDYvH~vv~R~-~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvC 223 (325)
T KOG0649|consen 148 IQREYR-GHTDYVHSVVGRN-ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVC 223 (325)
T ss_pred EEEEEc-CCcceeeeeeecc-cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEe
Confidence 999999 9999999998754 4558999999999999999988733211 11111112222 245666666 5668887
Q ss_pred eeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEE
Q 041325 322 GACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLA 401 (450)
Q Consensus 322 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 401 (450)
|+ ...+.+|.+++.++. ....+ ...+..+.|..+.+++++..+.|.-|.+.. ....
T Consensus 224 Gg-Gp~lslwhLrsse~t-----------~vfpi---pa~v~~v~F~~d~vl~~G~g~~v~~~~l~G---------vl~a 279 (325)
T KOG0649|consen 224 GG-GPKLSLWHLRSSEST-----------CVFPI---PARVHLVDFVDDCVLIGGEGNHVQSYTLNG---------VLQA 279 (325)
T ss_pred cC-CCceeEEeccCCCce-----------EEEec---ccceeEeeeecceEEEeccccceeeeeecc---------EEEE
Confidence 76 567999999987654 22222 455777889999999999999999998873 2222
Q ss_pred EecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEE
Q 041325 402 VLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIW 447 (450)
Q Consensus 402 ~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw 447 (450)
.........++..|+...-+ ++-.++..+.+.|+
T Consensus 280 ~ip~~s~~c~s~s~~~~p~k------------~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 280 NIPVESTACYSASWQTSPIK------------FISIAGFSNKLHIL 313 (325)
T ss_pred eccCCccceeeecccCCceE------------EEEecccceeeeee
Confidence 23333333444444433321 66667777777665
No 157
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.6e-21 Score=164.64 Aligned_cols=290 Identities=13% Similarity=0.213 Sum_probs=214.8
Q ss_pred CcccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCC-E
Q 041325 11 CRRNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGK-L 87 (450)
Q Consensus 11 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~-~ 87 (450)
.++|.+.+|.|..+.+..+.-+..+++ +.... .....++.+. =-..+|.+..| +|. .
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lri---------fqvDG---------k~N~~lqS~~--l~~fPi~~a~f~p~G~~~ 272 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRI---------FQVDG---------KVNPKLQSIH--LEKFPIQKAEFAPNGHSV 272 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEE---------EEecC---------ccChhheeee--eccCccceeeecCCCceE
Confidence 347888888888888888877777765 22211 1223555555 34678888888 787 8
Q ss_pred EEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCC-CceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEec
Q 041325 88 LYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNG-DAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYST 164 (450)
Q Consensus 88 l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~ 164 (450)
+++++.....+.||+.+.+....... .++. ..+.....+++. |+..|..|.|.+....++
T Consensus 273 i~~s~rrky~ysyDle~ak~~k~~~~----------~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~------- 335 (514)
T KOG2055|consen 273 IFTSGRRKYLYSYDLETAKVTKLKPP----------YGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK------- 335 (514)
T ss_pred EEecccceEEEEeeccccccccccCC----------CCcccchhheeEecCCCCeEEEcccCceEEeehhhhh-------
Confidence 99999999999999998886655221 1222 344555556554 999999999999998887
Q ss_pred cCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeE
Q 041325 165 SGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRC 244 (450)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 244 (450)
+.+..+. -.+.|..++|+.+++.|++++.+|.|.+||++...+
T Consensus 336 ---------eli~s~K----------------------------ieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~ 378 (514)
T KOG2055|consen 336 ---------ELITSFK----------------------------IEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSC 378 (514)
T ss_pred ---------hhhheee----------------------------eccEEeeEEEecCCcEEEEEcCCceEEEEecCCcce
Confidence 3333322 345799999999999999999999999999999999
Q ss_pred EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC
Q 041325 245 LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC 324 (450)
Q Consensus 245 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~ 324 (450)
++.+.....-.-++++.++++. ++++|+..|.|.|||..+.. .....+++..+......|++|+|++|+++|+.++.
T Consensus 379 ~~rf~D~G~v~gts~~~S~ng~-ylA~GS~~GiVNIYd~~s~~--~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~ 455 (514)
T KOG2055|consen 379 LHRFVDDGSVHGTSLCISLNGS-YLATGSDSGIVNIYDGNSCF--ASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASR 455 (514)
T ss_pred EEEEeecCccceeeeeecCCCc-eEEeccCcceEEEeccchhh--ccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhh
Confidence 9999733333345566556444 99999999999999976533 23455678888888899999999999999998876
Q ss_pred --CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCC
Q 041325 325 --DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 325 --dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~ 387 (450)
+..+++-.+.+......++. ....-+.|+|++|+++ +||.|..+|.|.+|.+.
T Consensus 456 ~~knalrLVHvPS~TVFsNfP~----------~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 456 VKKNALRLVHVPSCTVFSNFPT----------SNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ccccceEEEeccceeeeccCCC----------CCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 56799988886553311111 1222356899999964 99999999999999875
No 158
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=7.4e-23 Score=191.24 Aligned_cols=246 Identities=20% Similarity=0.251 Sum_probs=190.9
Q ss_pred CceEEEEEeCC--e----EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeec
Q 041325 128 DAVKSLVVLGD--K----LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRH 201 (450)
Q Consensus 128 ~~v~~l~~~~~--~----l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (450)
...+.|+|... . |+.|.+||.|.+||...... . ... .
T Consensus 65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~----------~---~~~------------------------~ 107 (1049)
T KOG0307|consen 65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA----------N---ASE------------------------E 107 (1049)
T ss_pred ccceeeeecccCCCccceeeccccCCceEEecchhhcc----------C---cch------------------------H
Confidence 46788888632 2 77788899999999876300 0 000 1
Q ss_pred ceeeeecCCCceEEEEEccC-CCEEEEEeCCCcEEEEecCCCeEEEEe-ecccccceEEEEEeecCCcEEEEEcCCCcEE
Q 041325 202 KKCTWVHHVDTVSALALSSD-GSLLYSTSWDRTFKIWRTSDFRCLESV-KNAHDDAINAIVVSKSNDGFVYTGSADTKIK 279 (450)
Q Consensus 202 ~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 279 (450)
.......|.+.|..+.|++. +++|++|+.||.|.|||+...+.-... .....+.|.+++|+..-..+|++++.+|.+.
T Consensus 108 ~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~ 187 (1049)
T KOG0307|consen 108 VLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAV 187 (1049)
T ss_pred HHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCce
Confidence 11233469999999999994 559999999999999999886554444 2235678999999976666799999999999
Q ss_pred EEeCcchhhhccccchhhhhHhhcc--cceEEEEEcCCC-CEEEEeeCCC---cEEEEEcCCCceeeeCCCCCCceeeec
Q 041325 280 VWKKLRAALQVNKKHSLVQTLEKHK--SAVTALALSTDG-TVLYSGACDR---SILVWERDQGNYIVDGDDDSGHMVLKG 353 (450)
Q Consensus 280 vwd~~~~~~~~~~~~~~~~~~~~~~--~~i~~l~~~~~~-~~l~~g~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~ 353 (450)
|||++..+ .+-.+..+. ..+..++|+|+. ..|++++.|. .|.+||++.-. .+.+
T Consensus 188 iWDlr~~~--------pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as------------sP~k 247 (1049)
T KOG0307|consen 188 IWDLRKKK--------PIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS------------SPLK 247 (1049)
T ss_pred eccccCCC--------cccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC------------Cchh
Confidence 99998765 444444443 347889999975 4566665543 59999998532 2446
Q ss_pred cccCCccceEEEEEeC---CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCC
Q 041325 354 ALRGHTKAILCLAVVS---NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSS 430 (450)
Q Consensus 354 ~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~ 430 (450)
.+.+|...|.+++|++ .+|++++.|+.|.+|+.+++ +.+..+......+..+.|+|....
T Consensus 248 ~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg--------Evl~~~p~~~nW~fdv~w~pr~P~--------- 310 (1049)
T KOG0307|consen 248 ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG--------EVLGELPAQGNWCFDVQWCPRNPS--------- 310 (1049)
T ss_pred hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc--------eEeeecCCCCcceeeeeecCCCcc---------
Confidence 7789999999999983 49999999999999999986 788888888889999999998875
Q ss_pred ceEEEEEcccCCcEEEEEeC
Q 041325 431 TSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 431 ~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+++.++.||.|-||.++
T Consensus 311 ---~~A~asfdgkI~I~sl~ 327 (1049)
T KOG0307|consen 311 ---VMAAASFDGKISIYSLQ 327 (1049)
T ss_pred ---hhhhheeccceeeeeee
Confidence 89999999999999873
No 159
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.89 E-value=1.7e-22 Score=163.32 Aligned_cols=260 Identities=17% Similarity=0.290 Sum_probs=187.5
Q ss_pred eeeeEEeecCCCcceEEEEE--e----CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC
Q 041325 64 QCSATLKVKGNSSYIPSLAI--A----GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG 137 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d----~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 137 (450)
+.+++.....|......++| | ..++|.|+.-|.|+|.|+.++++... +.+|+..|+.|.+.|
T Consensus 78 r~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~------------~~ghG~sINeik~~p 145 (385)
T KOG1034|consen 78 RLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKN------------YRGHGGSINEIKFHP 145 (385)
T ss_pred eeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccc------------eeccCccchhhhcCC
Confidence 56666665567888888888 2 56899999999999999999987766 789999999999997
Q ss_pred Ce---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceE
Q 041325 138 DK---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVS 214 (450)
Q Consensus 138 ~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 214 (450)
+. +++++.|..||+|++++. .++..+... .+|.+.|.
T Consensus 146 ~~~qlvls~SkD~svRlwnI~~~----------------~Cv~VfGG~------------------------egHrdeVL 185 (385)
T KOG1034|consen 146 DRPQLVLSASKDHSVRLWNIQTD----------------VCVAVFGGV------------------------EGHRDEVL 185 (385)
T ss_pred CCCcEEEEecCCceEEEEeccCC----------------eEEEEeccc------------------------ccccCcEE
Confidence 66 999999999999999999 444444322 37999999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEecCCCeEEEE---------------------------eecccccceEEEEEeecCCc
Q 041325 215 ALALSSDGSLLYSTSWDRTFKIWRTSDFRCLES---------------------------VKNAHDDAINAIVVSKSNDG 267 (450)
Q Consensus 215 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---------------------------~~~~~~~~v~~~~~~~~~~~ 267 (450)
++.|+.+|.++++++.|..|++|++...+.... -...|...|.|+.|. + +
T Consensus 186 SvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--g-d 262 (385)
T KOG1034|consen 186 SVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--G-D 262 (385)
T ss_pred EEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--h-h
Confidence 999999999999999999999999983211110 112466677777776 3 4
Q ss_pred EEEEEcCCCcEEEEeCcc-hhh-----hccccchhhhhHhhcccceEEE--EEcCCCCEEEEeeCCCcEEEEEcCCCcee
Q 041325 268 FVYTGSADTKIKVWKKLR-AAL-----QVNKKHSLVQTLEKHKSAVTAL--ALSTDGTVLYSGACDRSILVWERDQGNYI 339 (450)
Q Consensus 268 ~l~~~~~dg~i~vwd~~~-~~~-----~~~~~~~~~~~~~~~~~~i~~l--~~~~~~~~l~~g~~dg~i~vwd~~~~~~~ 339 (450)
++++-+-++.|..|..-. .+. ........+..+.-....|+-+ +|.|-++.|+.|...|.|++||++.....
T Consensus 263 ~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~ 342 (385)
T KOG1034|consen 263 FILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPP 342 (385)
T ss_pred heeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCc
Confidence 889989999999998722 110 0001111222333334445555 45677889999999999999999976432
Q ss_pred eeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCC
Q 041325 340 VDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~ 387 (450)
....+. .......|...+|+ +..|+....|++|.-||..
T Consensus 343 -------~~ttl~--~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 343 -------KCTTLT--HSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred -------cCceEE--eccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 111111 11123456666665 6699999999999999854
No 160
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=8.1e-22 Score=158.88 Aligned_cols=219 Identities=17% Similarity=0.269 Sum_probs=161.7
Q ss_pred eeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeE-----EEEeecccccceEEEEEeecCCcEEEEEcCCCcE
Q 041325 204 CTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRC-----LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKI 278 (450)
Q Consensus 204 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 278 (450)
..+.+|.+.|++++|+.||++|++++.|+.|++|++++... ++.- -.-+..+.+.|.|+-..+++.......+
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~n--ve~dhpT~V~FapDc~s~vv~~~~g~~l 157 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQN--VEYDHPTRVVFAPDCKSVVVSVKRGNKL 157 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhcc--ccCCCceEEEECCCcceEEEEEccCCEE
Confidence 45678999999999999999999999999999999987432 2111 1223568899999888788888888899
Q ss_pred EEEeCcchhhhccc----cchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeecc
Q 041325 279 KVWKKLRAALQVNK----KHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGA 354 (450)
Q Consensus 279 ~vwd~~~~~~~~~~----~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 354 (450)
++|.+...+-.... .......-+.|...+-.+-...++.+|++++.|..|.+|+++ |+.+...+. ..
T Consensus 158 ~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt--------nq 228 (420)
T KOG2096|consen 158 CVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT--------NQ 228 (420)
T ss_pred EEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc--------cc
Confidence 99987654311000 000111123355666667777788999999999999999999 665522211 11
Q ss_pred ccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEE
Q 041325 355 LRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFL 434 (450)
Q Consensus 355 ~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~ 434 (450)
+. ..-.+++.+|+++++++..--|++|.+--+.....+....+..++||...|..++|+++.. .
T Consensus 229 ~~---n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~-------------r 292 (420)
T KOG2096|consen 229 SS---NYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSST-------------R 292 (420)
T ss_pred cc---ccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcc-------------e
Confidence 11 1224556667899999999999999976443333444566788999999999999999999 9
Q ss_pred EEEcccCCcEEEEEe
Q 041325 435 VYSGSLDCEIKIWQI 449 (450)
Q Consensus 435 l~s~~~Dg~i~iw~l 449 (450)
++|.|.||+++|||.
T Consensus 293 ~vtvSkDG~wriwdt 307 (420)
T KOG2096|consen 293 AVTVSKDGKWRIWDT 307 (420)
T ss_pred eEEEecCCcEEEeec
Confidence 999999999999996
No 161
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=9.5e-22 Score=158.25 Aligned_cols=244 Identities=16% Similarity=0.178 Sum_probs=172.7
Q ss_pred eEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeee
Q 041325 130 VKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWV 207 (450)
Q Consensus 130 v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (450)
..|+.|++.+ |++|+.||.|.+||+.+.. ....+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~-------------------------------------------iar~ls 62 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFR-------------------------------------------IARMLS 62 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccc-------------------------------------------hhhhhh
Confidence 6889998544 9999999999999999872 223345
Q ss_pred cCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchh
Q 041325 208 HHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAA 287 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 287 (450)
+|..+|++++|+++|+.|++++.|..|.+||+..|.+++.+. ...+|....|+|...+.+++.-.+..-.+.++..+.
T Consensus 63 aH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rir--f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~ 140 (405)
T KOG1273|consen 63 AHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIR--FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPK 140 (405)
T ss_pred ccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEE--ccCccceeeeccccCCeEEEEEecCCcEEEEecCCc
Confidence 799999999999999999999999999999999999999997 789999999999888877777666666676665432
Q ss_pred hhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC-ccceEEEE
Q 041325 288 LQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH-TKAILCLA 366 (450)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~ 366 (450)
. ..-+...-...+....+..|.+.|++|++|...|.+.++|..+.+++. .++-. ...|..+.
T Consensus 141 h----~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~va-------------s~rits~~~IK~I~ 203 (405)
T KOG1273|consen 141 H----SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVA-------------SFRITSVQAIKQII 203 (405)
T ss_pred e----eeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeee-------------eeeechheeeeEEE
Confidence 1 000010101112223344689999999999999999999999887662 22222 24566666
Q ss_pred Ee--CCeEEEEeCCCeEEEeeCCCCccc-cCCCceeEEEecC--CCcceEEEEEEecCCCCCCCCCCCCceEEEEEcc-c
Q 041325 367 VV--SNLLFSGSSDNTIRIWRRSSSVTD-HQKGYSCLAVLEG--HRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGS-L 440 (450)
Q Consensus 367 ~~--~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~-~ 440 (450)
+. ++.++.-+.|+.||.|+++.-... .....++...++. ....-.+++|+.+|. |++.++ .
T Consensus 204 ~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dge-------------Yv~a~s~~ 270 (405)
T KOG1273|consen 204 VSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGE-------------YVCAGSAR 270 (405)
T ss_pred EeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCcc-------------EEEecccc
Confidence 65 779999999999999998742110 0000111111111 112345677888887 666555 4
Q ss_pred CCcEEEEE
Q 041325 441 DCEIKIWQ 448 (450)
Q Consensus 441 Dg~i~iw~ 448 (450)
-..++||+
T Consensus 271 aHaLYIWE 278 (405)
T KOG1273|consen 271 AHALYIWE 278 (405)
T ss_pred ceeEEEEe
Confidence 56789996
No 162
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=3e-22 Score=187.19 Aligned_cols=249 Identities=18% Similarity=0.265 Sum_probs=192.5
Q ss_pred CCcceEEEEE--eC----CEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC---eEEEEe
Q 041325 74 NSSYIPSLAI--AG----KLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD---KLFSAH 144 (450)
Q Consensus 74 h~~~v~~~~~--d~----~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~l~s~~ 144 (450)
-......++| .+ .+||.|..||.|.+||...-. .............|.+.|..+.|++. .|++|+
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~------~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa 136 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASII------ANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGA 136 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhc------cCcchHHHhhhcccCCceeeeeccccCCceeeccC
Confidence 3456677888 22 369999999999999987631 00011111235689999999999854 499999
Q ss_pred CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCC
Q 041325 145 QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGS 223 (450)
Q Consensus 145 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 223 (450)
.||.|.|||+...+...... -....+.|.+++|+. ...
T Consensus 137 ~~geI~iWDlnn~~tP~~~~-----------------------------------------~~~~~~eI~~lsWNrkvqh 175 (1049)
T KOG0307|consen 137 DDGEILIWDLNKPETPFTPG-----------------------------------------SQAPPSEIKCLSWNRKVSH 175 (1049)
T ss_pred CCCcEEEeccCCcCCCCCCC-----------------------------------------CCCCcccceEeccchhhhH
Confidence 99999999998763211000 002445799999998 567
Q ss_pred EEEEEeCCCcEEEEecCCCeEEEEeecccc-cceEEEEEeecCCcEEEEEcCCC---cEEEEeCcchhhhccccchhhhh
Q 041325 224 LLYSTSWDRTFKIWRTSDFRCLESVKNAHD-DAINAIVVSKSNDGFVYTGSADT---KIKVWKKLRAALQVNKKHSLVQT 299 (450)
Q Consensus 224 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~ 299 (450)
.|++++.+|++.|||++..+.+..+..... ..+..++|+|+....+++++.|. .|.+||+|... .+++.
T Consensus 176 ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as-------sP~k~ 248 (1049)
T KOG0307|consen 176 ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS-------SPLKI 248 (1049)
T ss_pred HhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC-------Cchhh
Confidence 789999999999999998887777762222 35789999998887888887764 68999987643 36788
Q ss_pred HhhcccceEEEEEcCCC-CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC---CeEEEE
Q 041325 300 LEKHKSAVTALALSTDG-TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS---NLLFSG 375 (450)
Q Consensus 300 ~~~~~~~i~~l~~~~~~-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~ 375 (450)
+.+|...|.++.|++.+ ++|++++.|+.|.+|+.++++.+ ..+.....++..+.|++ ..++++
T Consensus 249 ~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl-------------~~~p~~~nW~fdv~w~pr~P~~~A~a 315 (1049)
T KOG0307|consen 249 LEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVL-------------GELPAQGNWCFDVQWCPRNPSVMAAA 315 (1049)
T ss_pred hcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEe-------------eecCCCCcceeeeeecCCCcchhhhh
Confidence 89999999999999955 89999999999999999999866 56666778899999984 499999
Q ss_pred eCCCeEEEeeCCCC
Q 041325 376 SSDNTIRIWRRSSS 389 (450)
Q Consensus 376 ~~dg~v~iwd~~~~ 389 (450)
+-||.|.||.+...
T Consensus 316 sfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 316 SFDGKISIYSLQGT 329 (1049)
T ss_pred eeccceeeeeeecC
Confidence 99999999998864
No 163
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.89 E-value=6.1e-21 Score=158.72 Aligned_cols=308 Identities=17% Similarity=0.196 Sum_probs=198.4
Q ss_pred CcceEEEEE---eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeE
Q 041325 75 SSYIPSLAI---AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKI 149 (450)
Q Consensus 75 ~~~v~~~~~---d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i 149 (450)
..+|..+.| +.+.||||+.|..|++|.++..+...- .........+..|...|+++.|+|++ |++|+.+|.|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~---~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v 89 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG---DMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEV 89 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCC---ceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceE
Confidence 467888888 345999999999999998876542210 01112233577999999999999886 9999999999
Q ss_pred EEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe
Q 041325 150 RVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS 229 (450)
Q Consensus 150 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 229 (450)
.+|................. . -.......+.+|.+.|..++|+|++.++++++
T Consensus 90 ~lWk~~~~~~~~~d~e~~~~-------------k--------------e~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s 142 (434)
T KOG1009|consen 90 FLWKQGDVRIFDADTEADLN-------------K--------------EKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGS 142 (434)
T ss_pred EEEEecCcCCccccchhhhC-------------c--------------cceEEEEEecccccchhhhhccCCCceeeeee
Confidence 99987742110000000000 0 01122334557999999999999999999999
Q ss_pred CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc-------------chh
Q 041325 230 WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK-------------HSL 296 (450)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-------------~~~ 296 (450)
.|+.+++||+..|.....+. .|...+..++|.|.+ .++++-+.|...+.+.+...+...... ...
T Consensus 143 ~dns~~l~Dv~~G~l~~~~~-dh~~yvqgvawDpl~-qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s 220 (434)
T KOG1009|consen 143 VDNSVRLWDVHAGQLLAILD-DHEHYVQGVAWDPLN-QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKS 220 (434)
T ss_pred ccceEEEEEeccceeEeecc-ccccccceeecchhh-hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcce
Confidence 99999999999999988887 899999999999944 478888888766666654332110000 000
Q ss_pred hhhHh--hcccceEEEEEcCCCCEEEEeeC----CCcE-----EEEEcCCCceeeeCCCCCCceeeeccccCCccceEEE
Q 041325 297 VQTLE--KHKSAVTALALSTDGTVLYSGAC----DRSI-----LVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL 365 (450)
Q Consensus 297 ~~~~~--~~~~~i~~l~~~~~~~~l~~g~~----dg~i-----~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 365 (450)
.+-+. ....-...++|+|||.++++... ++.+ ++|+-...+ .+...+..-..+...+
T Consensus 221 ~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~------------rP~~~lp~~~k~~lav 288 (434)
T KOG1009|consen 221 TRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLK------------RPAARLPSPKKPALAV 288 (434)
T ss_pred eeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeecccccc------------CceeecCCCCcceEEE
Confidence 00000 01122456889999999998643 2222 333322111 0112222222233333
Q ss_pred EEe-------------------CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCC
Q 041325 366 AVV-------------------SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNS 426 (450)
Q Consensus 366 ~~~-------------------~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~ 426 (450)
.++ -.++++....+.|++||.++. .+.-++. .-|-..++.++|++++.
T Consensus 289 r~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~-----~P~~~v~--nihy~~iTDiaws~dg~------ 355 (434)
T KOG1009|consen 289 RFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTL-----EPLAVVD--NIHYSAITDIAWSDDGS------ 355 (434)
T ss_pred EeeeeEEEeccccccccccccccceEEEEeecceEEEeccccc-----cceEEEe--eeeeeeecceeecCCCc------
Confidence 222 123444444567999998872 2233333 34788999999999999
Q ss_pred CCCCceEEEEEcccCCcEEE
Q 041325 427 DHSSTSFLVYSGSLDCEIKI 446 (450)
Q Consensus 427 ~~~~~~~~l~s~~~Dg~i~i 446 (450)
+|+..|.||...+
T Consensus 356 -------~l~vSS~DGyCS~ 368 (434)
T KOG1009|consen 356 -------VLLVSSTDGFCSL 368 (434)
T ss_pred -------EEEEeccCCceEE
Confidence 8999999997655
No 164
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.3e-21 Score=167.37 Aligned_cols=227 Identities=17% Similarity=0.320 Sum_probs=162.6
Q ss_pred eeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---
Q 041325 65 CSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--- 139 (450)
Q Consensus 65 ~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--- 139 (450)
+-+.|+ ||++.|.|+.| ||.+|++||+|-.+.|||.-..+++.. +-.||.+.|.++.|.|..
T Consensus 42 lE~eL~--GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~Kllhs-----------I~TgHtaNIFsvKFvP~tnnr 108 (758)
T KOG1310|consen 42 LEAELT--GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHS-----------ISTGHTANIFSVKFVPYTNNR 108 (758)
T ss_pred hhhhhc--cccceecceeecCCCCEEeecCCcceEEeecchhcceeee-----------eecccccceeEEeeeccCCCe
Confidence 344556 99999999999 899999999999999999887776655 457999999999998543
Q ss_pred -EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEE
Q 041325 140 -LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALAL 218 (450)
Q Consensus 140 -l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 218 (450)
+++|+.|..|+++|+...+.. ..... .......+..|...|..++.
T Consensus 109 iv~sgAgDk~i~lfdl~~~~~~------~~d~~---------------------------~~~~~~~~~cht~rVKria~ 155 (758)
T KOG1310|consen 109 IVLSGAGDKLIKLFDLDSSKEG------GMDHG---------------------------MEETTRCWSCHTDRVKRIAT 155 (758)
T ss_pred EEEeccCcceEEEEeccccccc------ccccC---------------------------ccchhhhhhhhhhhhhheec
Confidence 999999999999999864210 00000 00122334568999999999
Q ss_pred ccCC-CEEEEEeCCCcEEEEecCCCeEEE-------Eeec--ccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhh
Q 041325 219 SSDG-SLLYSTSWDRTFKIWRTSDFRCLE-------SVKN--AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAAL 288 (450)
Q Consensus 219 ~~~~-~~l~~~~~dg~i~iwd~~~~~~~~-------~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 288 (450)
.|++ +.+.+++.||+|+-+|+++..... .+.. ..--...++.++|....+|++|+.|-..++||.+...-
T Consensus 156 ~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lk 235 (758)
T KOG1310|consen 156 APNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLK 235 (758)
T ss_pred CCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhcc
Confidence 9987 889999999999999998732211 1110 12245688999999998999999999999999644221
Q ss_pred hccc----------cchhhhhHh-hc-----------ccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCc
Q 041325 289 QVNK----------KHSLVQTLE-KH-----------KSAVTALALSTDGTVLYSGACDRSILVWERDQGN 337 (450)
Q Consensus 289 ~~~~----------~~~~~~~~~-~~-----------~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~ 337 (450)
.... ...++..+. +| -..++-++|+|+|.-|+..-..-.|+++|+..++
T Consensus 236 s~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 236 SFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred CCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCC
Confidence 1100 001122111 11 1225678899999888777667789999987654
No 165
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.88 E-value=4.2e-21 Score=152.71 Aligned_cols=271 Identities=17% Similarity=0.204 Sum_probs=195.5
Q ss_pred eEEeecCCCcceEEEEE---eCCEEEEeeCC-------CcEEEecCCCCCceeeeecCCCCcceeEEe-cCCCceEEEEE
Q 041325 67 ATLKVKGNSSYIPSLAI---AGKLLYGGSSN-------GEIRAWNRDPNNYVNITSTDVGDHANVVAT-GNGDAVKSLVV 135 (450)
Q Consensus 67 ~~l~~~~h~~~v~~~~~---d~~~l~tgs~d-------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~ 135 (450)
+.|. .|.+.|..++- |.+.|+|+..+ -.+-||.+............ .....+. .+-+.|.|+.|
T Consensus 57 kvf~--h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tl---E~v~~Ldteavg~i~cvew 131 (370)
T KOG1007|consen 57 KVFF--HHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTL---ECVASLDTEAVGKINCVEW 131 (370)
T ss_pred hhhh--cCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchh---hHhhcCCHHHhCceeeEEE
Confidence 3444 78899999987 78888887653 24679988654322110000 0000111 34459999999
Q ss_pred eCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCce
Q 041325 136 LGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTV 213 (450)
Q Consensus 136 ~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 213 (450)
.|+. +++-. |..|.+|+++..... ...++.. .-.++....
T Consensus 132 ~Pns~klasm~-dn~i~l~~l~ess~~---------------vaev~ss----------------------~s~e~~~~f 173 (370)
T KOG1007|consen 132 EPNSDKLASMD-DNNIVLWSLDESSKI---------------VAEVLSS----------------------ESAEMRHSF 173 (370)
T ss_pred cCCCCeeEEec-cCceEEEEcccCcch---------------heeeccc----------------------cccccccee
Confidence 9877 66555 889999999887320 1111110 001255677
Q ss_pred EEEEEcc--CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc
Q 041325 214 SALALSS--DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN 291 (450)
Q Consensus 214 ~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 291 (450)
++-+|+| +++.+++.+ |+++..||+++.++...+...|...|..+.|+|....+|++|+.||.|++||.+..+
T Consensus 174 tsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk---- 248 (370)
T KOG1007|consen 174 TSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK---- 248 (370)
T ss_pred cccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC----
Confidence 8889998 788887765 899999999999999999989999999999999888789999999999999998655
Q ss_pred ccchhhhhHhhcccceEEEEEcC-CCCEEEEeeCCCcEEEEEcCCCc--eeeeCCCC--------------CCceeeecc
Q 041325 292 KKHSLVQTLEKHKSAVTALALST-DGTVLYSGACDRSILVWERDQGN--YIVDGDDD--------------SGHMVLKGA 354 (450)
Q Consensus 292 ~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~g~~dg~i~vwd~~~~~--~~~~~~~~--------------~~~~~~~~~ 354 (450)
.+++.+.+|...++++.|+| ..++|++|+.|..|.+|...+-. .-.....+ ...-.....
T Consensus 249 ---~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~t 325 (370)
T KOG1007|consen 249 ---FPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLET 325 (370)
T ss_pred ---ccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccccccccc
Confidence 37888999999999999999 56789999999999999865321 11111110 011112346
Q ss_pred ccCCccceEEEEEeCC---eEEEEeCCCeEEEeeCCC
Q 041325 355 LRGHTKAILCLAVVSN---LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 355 ~~~~~~~v~~~~~~~~---~l~s~~~dg~v~iwd~~~ 388 (450)
+..|...|.+++|+.. .+|+-+.||++.|=.+..
T Consensus 326 ydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r 362 (370)
T KOG1007|consen 326 YDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVPR 362 (370)
T ss_pred ccccccceEEEeeccCCCeeEEEeccCceEEeecCCh
Confidence 7789999999999843 899999999998877653
No 166
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=2.8e-21 Score=164.71 Aligned_cols=261 Identities=16% Similarity=0.144 Sum_probs=188.8
Q ss_pred CcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-E--EEEeCCCeEEEEEcCCCceeEEeccCccccc
Q 041325 95 GEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-L--FSAHQDHKIRVWKIDNNTSAYYSTSGKLKNK 171 (450)
Q Consensus 95 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l--~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 171 (450)
..+++||+........... ......+.++.|.... | ++.+.|..|++|.-...... .
T Consensus 12 d~~kl~D~s~~~~~~~~~~----------~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~-V--------- 71 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYVH----------QTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPE-V--------- 71 (673)
T ss_pred CceEEeecccccCcccccc----------CCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCc-c---------
Confidence 4799999987664433111 1112248899998555 4 44566888999976544110 0
Q ss_pred ceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecc
Q 041325 172 YYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNA 251 (450)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 251 (450)
..+.. ...+.-.|++......++++|+..+.|+|||++...+.+.+. .
T Consensus 72 --p~~~k-----------------------------~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lk-d 119 (673)
T KOG4378|consen 72 --PRVRK-----------------------------LTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLK-D 119 (673)
T ss_pred --ceeec-----------------------------cccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhcc-C
Confidence 00000 011234455555566899999999999999999555555555 8
Q ss_pred cccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhc-ccceEEEEEcCCCC-EEEEeeCCCcEE
Q 041325 252 HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKH-KSAVTALALSTDGT-VLYSGACDRSIL 329 (450)
Q Consensus 252 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~~~i~~l~~~~~~~-~l~~g~~dg~i~ 329 (450)
|...|+++.++. .+.+|++++..|.|.+-.+.++. ....+... ...+.-+.|+|..+ +|.+++.+|.|.
T Consensus 120 h~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~--------~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vt 190 (673)
T KOG4378|consen 120 HQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQ--------KTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVT 190 (673)
T ss_pred CcceeEEEEecC-CcceeEEeccCCcEEEEecccCc--------cccceecCCCCeEEEeecccccceeeEeeccCCeEE
Confidence 999999999987 55599999999999999987765 33344333 34566889999766 456788999999
Q ss_pred EEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC---eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCC
Q 041325 330 VWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN---LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGH 406 (450)
Q Consensus 330 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h 406 (450)
+||+....+++ .....|..+...++|++. +|++.+.|..|.+||+.+. .....+. .
T Consensus 191 lwDv~g~sp~~------------~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~--------~s~~~l~-y 249 (673)
T KOG4378|consen 191 LWDVQGMSPIF------------HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ--------ASTDRLT-Y 249 (673)
T ss_pred EEeccCCCccc------------chhhhccCCcCcceecCCccceEEEecccceEEEeecccc--------cccceee-e
Confidence 99998765442 456779999999999853 9999999999999999863 2222232 4
Q ss_pred CcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 407 RRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 407 ~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
..+.+.++|.++|. +|+.|...|.|..||||
T Consensus 250 ~~Plstvaf~~~G~-------------~L~aG~s~G~~i~YD~R 280 (673)
T KOG4378|consen 250 SHPLSTVAFSECGT-------------YLCAGNSKGELIAYDMR 280 (673)
T ss_pred cCCcceeeecCCce-------------EEEeecCCceEEEEecc
Confidence 56889999999999 99999999999999997
No 167
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=1.3e-21 Score=169.38 Aligned_cols=265 Identities=20% Similarity=0.297 Sum_probs=189.7
Q ss_pred ceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-
Q 041325 63 HQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK- 139 (450)
Q Consensus 63 ~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~- 139 (450)
+.+..++. .|...|++++| ....|++++.||.+.+|+++... ........+...+.+|.++|.|++...+.
T Consensus 284 w~ik~tl~--s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~----~s~~~~~epi~tfraH~gPVl~v~v~~n~~ 357 (577)
T KOG0642|consen 284 WNIKFTLR--SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAK----KSAEKDVEPILTFRAHEGPVLCVVVPSNGE 357 (577)
T ss_pred cceeeeee--cchhhhhhhhcCCCCCeEEEeccccchhhhhhcccC----CccccceeeeEEEecccCceEEEEecCCce
Confidence 34445666 89999999999 68999999999999999994411 12233345567799999999999998766
Q ss_pred -EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEE
Q 041325 140 -LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALAL 218 (450)
Q Consensus 140 -l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 218 (450)
+++|+.||+|+.|++......+- .+. -......+.+|.+.|+.+++
T Consensus 358 ~~ysgg~Dg~I~~w~~p~n~dp~d---------s~d------------------------p~vl~~~l~Ghtdavw~l~~ 404 (577)
T KOG0642|consen 358 HCYSGGIDGTIRCWNLPPNQDPDD---------SYD------------------------PSVLSGTLLGHTDAVWLLAL 404 (577)
T ss_pred EEEeeccCceeeeeccCCCCCccc---------ccC------------------------cchhccceeccccceeeeee
Confidence 99999999999999873311000 000 00112245689999999999
Q ss_pred ccCCCEEEEEeCCCcEEEEecCCCeEEEEeec-ccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhh
Q 041325 219 SSDGSLLYSTSWDRTFKIWRTSDFRCLESVKN-AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLV 297 (450)
Q Consensus 219 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 297 (450)
++....|++++.||++++|+...... ..+.. ...+...++.+-.....+.++....+.-.++++.... .+
T Consensus 405 s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s--------~~ 475 (577)
T KOG0642|consen 405 SSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVS--------DL 475 (577)
T ss_pred cccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhh--------he
Confidence 99999999999999999999877665 33331 2233445666653232233433333333333333222 11
Q ss_pred hhHh-------hcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC
Q 041325 298 QTLE-------KHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN 370 (450)
Q Consensus 298 ~~~~-------~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 370 (450)
..+. .....+..+.++|.+.+.+++..|+.|+++|..+++.+ .....|...++++++.++
T Consensus 476 ~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l-------------~s~~a~~~svtslai~~n 542 (577)
T KOG0642|consen 476 LIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKIL-------------HSMVAHKDSVTSLAIDPN 542 (577)
T ss_pred eeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccc-------------hheeeccceecceeecCC
Confidence 1111 11245677889999999999999999999999998865 678889999999999865
Q ss_pred --eEEEEeCCCeEEEeeCCC
Q 041325 371 --LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 371 --~l~s~~~dg~v~iwd~~~ 388 (450)
+|++++.|+.+++|.+..
T Consensus 543 g~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 543 GPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred CceEEeecCCceeehhhccc
Confidence 999999999999999875
No 168
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=3.6e-21 Score=162.41 Aligned_cols=209 Identities=18% Similarity=0.177 Sum_probs=167.0
Q ss_pred eeecCCCceEEEEEccC--CCEEEEEeCCCcEEEEecCCC----eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcE
Q 041325 205 TWVHHVDTVSALALSSD--GSLLYSTSWDRTFKIWRTSDF----RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKI 278 (450)
Q Consensus 205 ~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 278 (450)
...-+.++|.+++|+|. .+++++|..-|.|-+||+.+. ..+..+. .|..+|.++.|+|.+...+++.+.||+|
T Consensus 181 v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~-~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 181 VAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT-PHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred eeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEec-cCCccccceEecCCChhheeeeccCcee
Confidence 34458889999999994 368899999999999999522 2233444 7999999999999988899999999999
Q ss_pred EEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC
Q 041325 279 KVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358 (450)
Q Consensus 279 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (450)
++-|++.... ..+.........+.++.|+.+...++.+..=|...+||++++..- ...+..|
T Consensus 260 R~~D~~~~i~------e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~------------~~~~~lh 321 (498)
T KOG4328|consen 260 RLQDFEGNIS------EEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSE------------YENLRLH 321 (498)
T ss_pred eeeeecchhh------HHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCcc------------chhhhhh
Confidence 9999977542 234444445667888899988888888888889999999986531 1455668
Q ss_pred ccceEEEEEeC---CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEE
Q 041325 359 TKAILCLAVVS---NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLV 435 (450)
Q Consensus 359 ~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l 435 (450)
...|.++++++ .+|+|++.|++++|||++.-. ....++.....|...|.+..|+|.+. .|
T Consensus 322 ~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~----~K~sp~lst~~HrrsV~sAyFSPs~g-------------tl 384 (498)
T KOG4328|consen 322 KKKITSVALNPVCPWFLATASLDQTAKIWDLRQLR----GKASPFLSTLPHRRSVNSAYFSPSGG-------------TL 384 (498)
T ss_pred hcccceeecCCCCchheeecccCcceeeeehhhhc----CCCCcceecccccceeeeeEEcCCCC-------------ce
Confidence 88999999985 499999999999999998631 11123445567999999999999998 79
Q ss_pred EEcccCCcEEEEEe
Q 041325 436 YSGSLDCEIKIWQI 449 (450)
Q Consensus 436 ~s~~~Dg~i~iw~l 449 (450)
+|.+.|..|+|||.
T Consensus 385 ~TT~~D~~IRv~ds 398 (498)
T KOG4328|consen 385 LTTCQDNEIRVFDS 398 (498)
T ss_pred EeeccCCceEEeec
Confidence 99999999999985
No 169
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=1e-21 Score=167.06 Aligned_cols=308 Identities=19% Similarity=0.297 Sum_probs=226.7
Q ss_pred eeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---
Q 041325 65 CSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--- 139 (450)
Q Consensus 65 ~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--- 139 (450)
+...|. +|.+.|..|.| .|..|++|+.|..|.+||...+..... ...+|...|..-.|.|..
T Consensus 134 l~~kL~--~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~-----------f~SGH~~NvfQaKFiP~s~d~ 200 (559)
T KOG1334|consen 134 LQKKLN--KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS-----------FESGHCNNVFQAKFIPFSGDR 200 (559)
T ss_pred hhhccc--CCCCccceeeecccCceeeccCccceEEeehhhccCcccc-----------cccccccchhhhhccCCCCCc
Confidence 445566 99999999999 699999999999999999988876554 235888888888886543
Q ss_pred -EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEE
Q 041325 140 -LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALAL 218 (450)
Q Consensus 140 -l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 218 (450)
+++++.||.|++=.+...... .....+..|.++|.-++.
T Consensus 201 ti~~~s~dgqvr~s~i~~t~~~----------------------------------------e~t~rl~~h~g~vhklav 240 (559)
T KOG1334|consen 201 TIVTSSRDGQVRVSEILETGYV----------------------------------------ENTKRLAPHEGPVHKLAV 240 (559)
T ss_pred CceeccccCceeeeeeccccce----------------------------------------ecceecccccCccceeee
Confidence 999999999998876544210 112233469999999999
Q ss_pred ccC-CCEEEEEeCCCcEEEEecCCCeEEEEee--ccccc---ceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccc
Q 041325 219 SSD-GSLLYSTSWDRTFKIWRTSDFRCLESVK--NAHDD---AINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNK 292 (450)
Q Consensus 219 ~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~---~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 292 (450)
-|+ ..-|.+++.|+.+.-.|++.......+. ..+.. ....++..|.+.+.+++++.|..+++||.+.-......
T Consensus 241 ~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n 320 (559)
T KOG1334|consen 241 EPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENN 320 (559)
T ss_pred cCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhcccc
Confidence 994 5569999999999999998765443332 12333 57889999988889999999999999998764421110
Q ss_pred cchhhhhH------hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCcc--ceEE
Q 041325 293 KHSLVQTL------EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK--AILC 364 (450)
Q Consensus 293 ~~~~~~~~------~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~ 364 (450)
..+..+ ......|++++|+.++.-|++...|-.|+++.-..+.--...............+++|.. .|.+
T Consensus 321 --~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKg 398 (559)
T KOG1334|consen 321 --GVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKG 398 (559)
T ss_pred --chhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccce
Confidence 011211 133457999999988877777788888999954432210000001111223344778864 4778
Q ss_pred EEEeC---CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccC
Q 041325 365 LAVVS---NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLD 441 (450)
Q Consensus 365 ~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~D 441 (450)
+.|-| +++++|+.-|.|.||+-.++ +.+..+.+-..-|+||.-+|-.. +|||.|-|
T Consensus 399 VNFfGPrsEyVvSGSDCGhIFiW~K~t~--------eii~~MegDr~VVNCLEpHP~~P-------------vLAsSGid 457 (559)
T KOG1334|consen 399 VNFFGPRSEYVVSGSDCGHIFIWDKKTG--------EIIRFMEGDRHVVNCLEPHPHLP-------------VLASSGID 457 (559)
T ss_pred eeeccCccceEEecCccceEEEEecchh--------HHHHHhhcccceEeccCCCCCCc-------------hhhccCCc
Confidence 88775 49999999999999998874 67777777777999999999998 99999999
Q ss_pred CcEEEEE
Q 041325 442 CEIKIWQ 448 (450)
Q Consensus 442 g~i~iw~ 448 (450)
..|+||.
T Consensus 458 ~DVKIWT 464 (559)
T KOG1334|consen 458 HDVKIWT 464 (559)
T ss_pred cceeeec
Confidence 9999995
No 170
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.86 E-value=6.4e-20 Score=170.08 Aligned_cols=293 Identities=20% Similarity=0.265 Sum_probs=200.3
Q ss_pred CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe----EEEEeCCCeEEEEEcCCCcee
Q 041325 85 GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK----LFSAHQDHKIRVWKIDNNTSA 160 (450)
Q Consensus 85 ~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~----l~s~~~dg~i~iw~~~~~~~~ 160 (450)
...++++...-.|+|||.+.++...-+.... .....|+.+.+-++. +++|+.||.||||+--....
T Consensus 1076 ~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~---------~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~- 1145 (1387)
T KOG1517|consen 1076 EPQIAAADDRERIRVWDWEKGRLLNGFDNGA---------FPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW- 1145 (1387)
T ss_pred CceeEEcCCcceEEEEecccCceeccccCCC---------CCCCccceeeeecccchhheeeeccCceEEEeccccccc-
Confidence 4567888777899999999888654422211 334689999987544 99999999999997432210
Q ss_pred EEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 041325 161 YYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTS 240 (450)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 240 (450)
.+. +.+..... ..-.+.+..+.-.-++|.....+|++++.-..|+|||..
T Consensus 1146 -------~~~---eLVTaw~~--------------------Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~ 1195 (1387)
T KOG1517|consen 1146 -------KKP---ELVTAWSS--------------------LSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAH 1195 (1387)
T ss_pred -------CCc---eeEEeecc--------------------ccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecc
Confidence 000 00000000 000011111122456787765566666668899999999
Q ss_pred CCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccc--eEEEEEcCCCC-
Q 041325 241 DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSA--VTALALSTDGT- 317 (450)
Q Consensus 241 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--i~~l~~~~~~~- 317 (450)
...++..+..+....++++.-+-...+++++|..||.|++||.+... ....+...+.|+.. |..+.+.++|-
T Consensus 1196 ~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~-----~ds~v~~~R~h~~~~~Iv~~slq~~G~~ 1270 (1387)
T KOG1517|consen 1196 KEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAP-----PDSLVCVYREHNDVEPIVHLSLQRQGLG 1270 (1387)
T ss_pred cceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCC-----ccccceeecccCCcccceeEEeecCCCc
Confidence 98888888877778889988777677799999999999999987754 22356666778777 99999998765
Q ss_pred EEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCc--c-ceEEEEEeCC--eEEEEeCCCeEEEeeCCCCccc
Q 041325 318 VLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT--K-AILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTD 392 (450)
Q Consensus 318 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~ 392 (450)
.|++|+.||.|++||++..... .......|. + ..+++..+.. .+|+|+. +.|+||++......
T Consensus 1271 elvSgs~~G~I~~~DlR~~~~e-----------~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~ 1338 (1387)
T KOG1517|consen 1271 ELVSGSQDGDIQLLDLRMSSKE-----------TFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLN 1338 (1387)
T ss_pred ceeeeccCCeEEEEecccCccc-----------ccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhc
Confidence 4999999999999999973111 001122222 2 5788888754 8888888 99999998753221
Q ss_pred cCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 393 HQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 393 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
..+.. -..+....+.+.+++|+|..- ++|+|+.|.+|.||.-
T Consensus 1339 ~~k~n--~~F~~q~~gs~scL~FHP~~~-------------llAaG~~Ds~V~iYs~ 1380 (1387)
T KOG1517|consen 1339 IIKYN--PGFMGQRIGSVSCLAFHPHRL-------------LLAAGSADSTVSIYSC 1380 (1387)
T ss_pred ccccC--cccccCcCCCcceeeecchhH-------------hhhhccCCceEEEeec
Confidence 11100 111222356789999999988 8999999999999963
No 171
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.86 E-value=1.1e-19 Score=147.07 Aligned_cols=294 Identities=19% Similarity=0.219 Sum_probs=202.2
Q ss_pred CCcccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE------
Q 041325 10 PCRRNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI------ 83 (450)
Q Consensus 10 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~------ 83 (450)
|+.=.|+..|+|+++-+.+.+..+.++.- ..|.-..+... ..+...+.++...+ .....|...+|
T Consensus 48 p~nf~kgckWSPDGSciL~~sedn~l~~~----nlP~dlys~~~--~~~~~~~~~~~~r~---~eg~tvydy~wYs~M~s 118 (406)
T KOG2919|consen 48 PLNFLKGCKWSPDGSCILSLSEDNCLNCW----NLPFDLYSKKA--DGPLNFSKHLSYRY---QEGETVYDYCWYSRMKS 118 (406)
T ss_pred chhhhccceeCCCCceEEeecccCeeeEE----ecChhhcccCC--CCccccccceeEEe---ccCCEEEEEEeeecccc
Confidence 77778999999999999999888888652 11111111110 11111122222222 23455666666
Q ss_pred ---eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCC---ceEEEEEeCCe-EEEEeCCCeEEEEEcCC
Q 041325 84 ---AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGD---AVKSLVVLGDK-LFSAHQDHKIRVWKIDN 156 (450)
Q Consensus 84 ---d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~-l~s~~~dg~i~iw~~~~ 156 (450)
+..++|+.+.|.-|++||.-+++....... ..|.+ ...+|+|++|+ -+-++..+.|+++|+..
T Consensus 119 ~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~----------ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~R 188 (406)
T KOG2919|consen 119 DQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRA----------YDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSR 188 (406)
T ss_pred CCCccceeeeccccCceeeeeccccccccchhh----------hhhHHhhhhheeEEecCCCCeEeecccceEEEeeccC
Confidence 367899999999999999999986554221 22332 45789999998 55566778999999943
Q ss_pred CceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEEEEEeCCCcEE
Q 041325 157 NTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLYSTSWDRTFK 235 (450)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~ 235 (450)
.-.. .....++. ..-.+..+-+.+++|+| +.+.++.|+....+-
T Consensus 189 pGr~------------c~vy~t~~-----------------------~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~g 233 (406)
T KOG2919|consen 189 PGRD------------CPVYTTVT-----------------------KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVG 233 (406)
T ss_pred CCCC------------Ccchhhhh-----------------------cccccccceeeeeeccCCCCcceeeecccceee
Confidence 3110 00000000 00113466789999999 667999999999999
Q ss_pred EEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhccc-ceEEEE--E
Q 041325 236 IWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS-AVTALA--L 312 (450)
Q Consensus 236 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~i~~l~--~ 312 (450)
||.-..+.++..+. +|.+.|+.+.|.++++.++.-+-.|..|..||++... .++..+..|.. .-..|. .
T Consensus 234 iy~~~~~~pl~llg-gh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~-------~pv~~L~rhv~~TNQRI~FDl 305 (406)
T KOG2919|consen 234 IYNDDGRRPLQLLG-GHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR-------DPVYALERHVGDTNQRILFDL 305 (406)
T ss_pred eEecCCCCceeeec-ccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc-------chhhhhhhhccCccceEEEec
Confidence 99999889888887 9999999999999777444444558899999998654 35666666655 333444 4
Q ss_pred cCCCCEEEEeeCCCcEEEEEcCC-CceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCC
Q 041325 313 STDGTVLYSGACDRSILVWERDQ-GNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSD 378 (450)
Q Consensus 313 ~~~~~~l~~g~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~d 378 (450)
.|++++|++|+.||.|++||+.. +.. ...+..|...++.++++|- ++++++..
T Consensus 306 d~~~~~LasG~tdG~V~vwdlk~~gn~-------------~sv~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 306 DPKGEILASGDTDGSVRVWDLKDLGNE-------------VSVTGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred CCCCceeeccCCCccEEEEecCCCCCc-------------ccccccccccccceecCcccceeeeccCc
Confidence 67999999999999999999987 432 2566778889999999976 55555543
No 172
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=5e-20 Score=160.68 Aligned_cols=246 Identities=17% Similarity=0.242 Sum_probs=180.6
Q ss_pred CCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecC
Q 041325 116 GDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLAN 193 (450)
Q Consensus 116 ~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (450)
+......+.||++.|.+|...+.+ |++|+.||+|++|.+.++ .|+.+...
T Consensus 389 Pt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~Tg----------------Rcvr~~~~------------ 440 (733)
T KOG0650|consen 389 PTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATG----------------RCVRTVQF------------ 440 (733)
T ss_pred cceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecc----------------eEEEEEee------------
Confidence 344567799999999999998766 999999999999999999 55555542
Q ss_pred ceEEEeecceeeeecCCCceEEEEEccCCC--EEEEEeCC--------------------------------CcEEEEec
Q 041325 194 NYVQVRRHKKCTWVHHVDTVSALALSSDGS--LLYSTSWD--------------------------------RTFKIWRT 239 (450)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d--------------------------------g~i~iwd~ 239 (450)
.+.|.|++|+|.++ .||++-.+ +.+..|.-
T Consensus 441 ----------------d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~ 504 (733)
T KOG0650|consen 441 ----------------DSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSR 504 (733)
T ss_pred ----------------cceeEEEEecCCCCceeEEEEecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeech
Confidence 23577777777443 23333222 22333332
Q ss_pred CC---CeEEEEeecccccceEEEEEeecCCcEEEEEcC---CCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEc
Q 041325 240 SD---FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSA---DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALS 313 (450)
Q Consensus 240 ~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 313 (450)
.. ++.-..+...|...|..+.|+..++ +|++... ...|.|.++.... ....|....+.|.++.|+
T Consensus 505 ~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD-YlatV~~~~~~~~VliHQLSK~~--------sQ~PF~kskG~vq~v~FH 575 (733)
T KOG0650|consen 505 ASLDELEKGVCIVIKHPKSIRQVTWHRKGD-YLATVMPDSGNKSVLIHQLSKRK--------SQSPFRKSKGLVQRVKFH 575 (733)
T ss_pred hhhhhhccceEEEEecCCccceeeeecCCc-eEEEeccCCCcceEEEEeccccc--------ccCchhhcCCceeEEEec
Confidence 21 1100011225788999999997555 6666544 3578888886655 344555667889999999
Q ss_pred CCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCcc
Q 041325 314 TDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVT 391 (450)
Q Consensus 314 ~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~ 391 (450)
|...+|++++ ...|+|||+..+..+ ..+......|..++.+ |+.|+.|+.|+.+..+|+.-+
T Consensus 576 Ps~p~lfVaT-q~~vRiYdL~kqelv-------------KkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldls-- 639 (733)
T KOG0650|consen 576 PSKPYLFVAT-QRSVRIYDLSKQELV-------------KKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLS-- 639 (733)
T ss_pred CCCceEEEEe-ccceEEEehhHHHHH-------------HHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccC--
Confidence 9999998887 467999999875533 4555566778888887 579999999999999998854
Q ss_pred ccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 392 DHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 392 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
.++.+.+..|...+++|+|++.-. ++++|+.||++.|+-
T Consensus 640 -----skPyk~lr~H~~avr~Va~H~ryP-------------Lfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 640 -----SKPYKTLRLHEKAVRSVAFHKRYP-------------LFASGSDDGTVIVFH 678 (733)
T ss_pred -----cchhHHhhhhhhhhhhhhhccccc-------------eeeeecCCCcEEEEe
Confidence 356778889999999999999999 999999999998873
No 173
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.85 E-value=2.4e-19 Score=142.95 Aligned_cols=279 Identities=15% Similarity=0.184 Sum_probs=192.9
Q ss_pred CcceEEEEE-----eCCEEEEeeC----CCcEEEecCC--CCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe----
Q 041325 75 SSYIPSLAI-----AGKLLYGGSS----NGEIRAWNRD--PNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---- 139 (450)
Q Consensus 75 ~~~v~~~~~-----d~~~l~tgs~----dg~v~vw~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---- 139 (450)
.-.+.++.| .+.+||.|+. .+.|.|-.++ +++.+.. .-..|.-+++.+.|.|+.
T Consensus 44 p~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~-----------a~fd~~YP~tK~~wiPd~~g~~ 112 (364)
T KOG0290|consen 44 PWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVED-----------ANFDHPYPVTKLMWIPDSKGVY 112 (364)
T ss_pred CCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceecc-----------CCCCCCCCccceEecCCccccC
Confidence 345777777 2678888874 3556655444 2222221 013788899999998765
Q ss_pred ---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEE
Q 041325 140 ---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSAL 216 (450)
Q Consensus 140 ---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 216 (450)
|++++ ..+|+|.+...+... +....+.. ..-..+..++++.
T Consensus 113 pdlLATs~--D~LRlWri~~ee~~~------------~~~~~L~~----------------------~kns~~~aPlTSF 156 (364)
T KOG0290|consen 113 PDLLATSS--DFLRLWRIGDEESRV------------ELQSVLNN----------------------NKNSEFCAPLTSF 156 (364)
T ss_pred cchhhccc--CeEEEEeccCcCCce------------ehhhhhcc----------------------CcccccCCccccc
Confidence 44433 479999998542110 11111110 0112466799999
Q ss_pred EEcc-CCCEEEEEeCCCcEEEEecCCCeE--EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc
Q 041325 217 ALSS-DGSLLYSTSWDRTFKIWRTSDFRC--LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 217 ~~~~-~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 293 (450)
.|+. +.+++.+++-|-+..|||++++.. +++....|...|..++|...+.+++++.+.||.+|+||++..+.
T Consensus 157 DWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH----- 231 (364)
T KOG0290|consen 157 DWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH----- 231 (364)
T ss_pred ccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEeccccc-----
Confidence 9998 888999999999999999998733 33333389999999999976677899999999999999987541
Q ss_pred chhhhhHhhcccceEEEEEcC-CCCEEEEeeCC-CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-
Q 041325 294 HSLVQTLEKHKSAVTALALST-DGTVLYSGACD-RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN- 370 (450)
Q Consensus 294 ~~~~~~~~~~~~~i~~l~~~~-~~~~l~~g~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 370 (450)
...+.+-.....+...++|++ |-+++++-..| ..|.|.|++... .+...+.+|.+.|++++|.+.
T Consensus 232 STIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~------------tpva~L~~H~a~VNgIaWaPhS 299 (364)
T KOG0290|consen 232 STIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPC------------TPVARLRNHQASVNGIAWAPHS 299 (364)
T ss_pred ceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCC------------cceehhhcCcccccceEecCCC
Confidence 112222222256778899988 45677775555 569999998543 245789999999999999854
Q ss_pred --eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 371 --LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 371 --~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
.|++++.|..+.+||+.....+ ....++..+. -.+.|+.+.|++...
T Consensus 300 ~~hictaGDD~qaliWDl~q~~~~--~~~dPilay~-a~~EVNqi~Ws~~~~ 348 (364)
T KOG0290|consen 300 SSHICTAGDDCQALIWDLQQMPRE--NGEDPILAYT-AGGEVNQIQWSSSQP 348 (364)
T ss_pred CceeeecCCcceEEEEeccccccc--CCCCchhhhh-ccceeeeeeecccCC
Confidence 9999999999999999864221 1122333333 467899999997665
No 174
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=8.4e-20 Score=151.49 Aligned_cols=208 Identities=20% Similarity=0.314 Sum_probs=160.3
Q ss_pred CCCcceEEEEE---eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---EEEEeCC
Q 041325 73 GNSSYIPSLAI---AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---LFSAHQD 146 (450)
Q Consensus 73 ~h~~~v~~~~~---d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~d 146 (450)
||+++|..++| +...||+||.|.+|.||.+..+.+... ...+...+.+|...|--++|+|.- |++++.|
T Consensus 79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~-----ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRD-----LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred CccccccccccCccCCceeecCCCCceEEEEECCCcccccC-----cccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence 99999999999 799999999999999999987664333 224556789999999999999765 9999999
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLY 226 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 226 (450)
.+|.+||+.+++ .+.++ .|.+.|.++.|+.+|.+|+
T Consensus 154 n~v~iWnv~tge----------------ali~l----------------------------~hpd~i~S~sfn~dGs~l~ 189 (472)
T KOG0303|consen 154 NTVSIWNVGTGE----------------ALITL----------------------------DHPDMVYSMSFNRDGSLLC 189 (472)
T ss_pred ceEEEEeccCCc----------------eeeec----------------------------CCCCeEEEEEeccCCceee
Confidence 999999999983 22222 3999999999999999999
Q ss_pred EEeCCCcEEEEecCCCeEEEEeeccccc-ceEEEEEeecCCcEEEEEc----CCCcEEEEeCcchhhhccccchhhhhHh
Q 041325 227 STSWDRTFKIWRTSDFRCLESVKNAHDD-AINAIVVSKSNDGFVYTGS----ADTKIKVWKKLRAALQVNKKHSLVQTLE 301 (450)
Q Consensus 227 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 301 (450)
+.+.|..|+|||.++++.+..-. .|.+ .-..+.|.. ++.+++.+ .+..+.+||..+-+ . .-....+.
T Consensus 190 TtckDKkvRv~dpr~~~~v~e~~-~heG~k~~Raifl~--~g~i~tTGfsr~seRq~aLwdp~nl~----e-P~~~~elD 261 (472)
T KOG0303|consen 190 TTCKDKKVRVIDPRRGTVVSEGV-AHEGAKPARAIFLA--SGKIFTTGFSRMSERQIALWDPNNLE----E-PIALQELD 261 (472)
T ss_pred eecccceeEEEcCCCCcEeeecc-cccCCCcceeEEec--cCceeeeccccccccceeccCccccc----C-cceeEEec
Confidence 99999999999999999988875 5554 445555664 33355544 36789999976543 1 11223333
Q ss_pred hcccceEEEEEcCCCCEEE-EeeCCCcEEEEEcCCCce
Q 041325 302 KHKSAVTALALSTDGTVLY-SGACDRSILVWERDQGNY 338 (450)
Q Consensus 302 ~~~~~i~~l~~~~~~~~l~-~g~~dg~i~vwd~~~~~~ 338 (450)
..+.|.---|.+|.+.++ +|-.|+.|+.|.+....+
T Consensus 262 -tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 262 -TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred -cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 345566666788888765 455799999999987653
No 175
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.85 E-value=3.3e-19 Score=162.21 Aligned_cols=275 Identities=12% Similarity=0.146 Sum_probs=195.1
Q ss_pred CCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC---eEEEEeCCCeEEEEEcCCCceeEEeccCcccc
Q 041325 94 NGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD---KLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKN 170 (450)
Q Consensus 94 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 170 (450)
++.+.||++........ .......|+++.|++. .++.|..+|.|.+||+.......
T Consensus 221 ~~~~~vW~~~~p~~Pe~------------~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~--------- 279 (555)
T KOG1587|consen 221 DGVLLVWSLKNPNTPEL------------VLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP--------- 279 (555)
T ss_pred CceEEEEecCCCCCceE------------EEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC---------
Confidence 35799999987632111 2234568999999854 48899999999999999873210
Q ss_pred cceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCC--CEEEEEeCCCcEEEEecCCCeEEE-E
Q 041325 171 KYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDG--SLLYSTSWDRTFKIWRTSDFRCLE-S 247 (450)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~-~ 247 (450)
... .......|..++..+.|..+. .-+++++.||.|..|+++...... .
T Consensus 280 -----~s~-----------------------ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~ 331 (555)
T KOG1587|consen 280 -----PSG-----------------------LSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEG 331 (555)
T ss_pred -----Ccc-----------------------cccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhh
Confidence 000 001112588899999997643 459999999999999887543211 1
Q ss_pred e-----e-----cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCC
Q 041325 248 V-----K-----NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGT 317 (450)
Q Consensus 248 ~-----~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~ 317 (450)
. . ......++++.|.+.....+++|+.+|.|.--+............+....+..|.++|.++.++|-+.
T Consensus 332 ~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~ 411 (555)
T KOG1587|consen 332 LLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP 411 (555)
T ss_pred cccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCcc
Confidence 1 0 02234689999999888899999999998774332222111112233445667889999999999766
Q ss_pred EEEEeeCCCcEEEEEcC-CCceeeeCCCCCCceeeeccccCCccceEEEEEeCC---eEEEEeCCCeEEEeeCCCCcccc
Q 041325 318 VLYSGACDRSILVWERD-QGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN---LLFSGSSDNTIRIWRRSSSVTDH 393 (450)
Q Consensus 318 ~l~~g~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~~~dg~v~iwd~~~~~~~~ 393 (450)
.++..+.|-+++||... ...++ ..+..+...+++++|++. .++++..||.|.+||+...
T Consensus 412 k~fls~gDW~vriWs~~~~~~Pl-------------~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~---- 474 (555)
T KOG1587|consen 412 KNFLSVGDWTVRIWSEDVIASPL-------------LSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD---- 474 (555)
T ss_pred ceeeeeccceeEeccccCCCCcc-------------hhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcc----
Confidence 55555559999999987 43332 456667777999999954 8999999999999999853
Q ss_pred CCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 394 QKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 394 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
...++.....+....+.+.|+++++ +|+.|...|.+++|+|
T Consensus 475 --~~~Pv~s~~~~~~~l~~~~~s~~g~-------------~lavGd~~G~~~~~~l 515 (555)
T KOG1587|consen 475 --DEEPVLSQKVCSPALTRVRWSPNGK-------------LLAVGDANGTTHILKL 515 (555)
T ss_pred --ccCCcccccccccccceeecCCCCc-------------EEEEecCCCcEEEEEc
Confidence 2344555555566778888888888 9999999999999997
No 176
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.85 E-value=1.7e-19 Score=143.76 Aligned_cols=207 Identities=18% Similarity=0.256 Sum_probs=160.1
Q ss_pred cCCCceEEEEEccCC-----CEEEEEeCCCcEEEEecCC--CeEE--EEe----ecccccceEEEEEeecCCcEEEEEcC
Q 041325 208 HHVDTVSALALSSDG-----SLLYSTSWDRTFKIWRTSD--FRCL--ESV----KNAHDDAINAIVVSKSNDGFVYTGSA 274 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~-----~~l~~~~~dg~i~iwd~~~--~~~~--~~~----~~~~~~~v~~~~~~~~~~~~l~~~~~ 274 (450)
.|.-+++.+.|.|+. ++||+++ ..+|+|.+.. .+.. ..+ ...+..++++..|+..+.+++.+++-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 588899999999965 3555554 5899999873 2211 111 12456789999999888889999999
Q ss_pred CCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCC-CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeec
Q 041325 275 DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDG-TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKG 353 (450)
Q Consensus 275 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 353 (450)
|-+..|||++++. .......+..|..+|..++|...+ +.+++.+.||.+++||++..+.. ....
T Consensus 172 DTTCTiWdie~~~-----~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS----------TIIY 236 (364)
T KOG0290|consen 172 DTTCTIWDIETGV-----SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS----------TIIY 236 (364)
T ss_pred cCeEEEEEEeecc-----ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc----------eEEe
Confidence 9999999998763 111344566899999999999855 57899999999999999975422 1222
Q ss_pred cccCCccceEEEEEe---CCeEEEEeCCC-eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCC
Q 041325 354 ALRGHTKAILCLAVV---SNLLFSGSSDN-TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHS 429 (450)
Q Consensus 354 ~~~~~~~~v~~~~~~---~~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~ 429 (450)
+-.....+...++|+ ++++|+-..|+ .|.|.|++.. ..++..+.+|.+.|+.++|.|....
T Consensus 237 E~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P-------~tpva~L~~H~a~VNgIaWaPhS~~-------- 301 (364)
T KOG0290|consen 237 EDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVP-------CTPVARLRNHQASVNGIAWAPHSSS-------- 301 (364)
T ss_pred cCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCC-------CcceehhhcCcccccceEecCCCCc--------
Confidence 222235677889997 45888877764 5999999875 5678899999999999999998875
Q ss_pred CceEEEEEcccCCcEEEEEeC
Q 041325 430 STSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 430 ~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
.|+|+|+|..+.||||.
T Consensus 302 ----hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 302 ----HICTAGDDCQALIWDLQ 318 (364)
T ss_pred ----eeeecCCcceEEEEecc
Confidence 89999999999999984
No 177
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.85 E-value=6.8e-21 Score=164.99 Aligned_cols=294 Identities=14% Similarity=0.212 Sum_probs=193.9
Q ss_pred CCEEEEeeCCCcEEEe--cCCCCCceeeee--------cCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEE
Q 041325 85 GKLLYGGSSNGEIRAW--NRDPNNYVNITS--------TDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVW 152 (450)
Q Consensus 85 ~~~l~tgs~dg~v~vw--~~~~~~~~~~~~--------~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw 152 (450)
....++...|...++| ++....+..... ........+.+..|.+.|+.++|.+.. |++++.||++++|
T Consensus 242 k~~~~g~d~~l~~~l~~~tla~l~I~~~~dd~~~~k~a~~k~w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~W 321 (577)
T KOG0642|consen 242 KSISVGADEDLMSRLGLGTLAGLTIEDEFDDLSDLKKAFTKKWNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLW 321 (577)
T ss_pred CCccccCchHHHHhhcccchhcccccccccchhhhhhhhheecceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhh
Confidence 4566777778888888 554433322222 011122334677899999999998766 9999999999999
Q ss_pred EcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCC
Q 041325 153 KIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDR 232 (450)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 232 (450)
+++.... .. ...-.+...|.+|.++|.|+++.+++..+++|+.||
T Consensus 322 nLqk~~~--------s~---------------------------~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg 366 (577)
T KOG0642|consen 322 NLQKAKK--------SA---------------------------EKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDG 366 (577)
T ss_pred hhcccCC--------cc---------------------------ccceeeeEEEecccCceEEEEecCCceEEEeeccCc
Confidence 9943210 00 011134556779999999999999999999999999
Q ss_pred cEEEEecCC---------CeEE-EEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhh
Q 041325 233 TFKIWRTSD---------FRCL-ESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEK 302 (450)
Q Consensus 233 ~i~iwd~~~---------~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 302 (450)
+|+.|++.. ...+ ..+. +|.+.++.+++++..+ .|++++.||++++|+..... .+......
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~-Ghtdavw~l~~s~~~~-~Llscs~DgTvr~w~~~~~~-------~~~f~~~~ 437 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLL-GHTDAVWLLALSSTKD-RLLSCSSDGTVRLWEPTEES-------PCTFGEPK 437 (577)
T ss_pred eeeeeccCCCCCcccccCcchhcccee-ccccceeeeeeccccc-ceeeecCCceEEeeccCCcC-------ccccCCcc
Confidence 999996542 1122 2334 8999999999998554 79999999999999975543 01111111
Q ss_pred cccceEEEEEcCCC-CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCC
Q 041325 303 HKSAVTALALSTDG-TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDN 379 (450)
Q Consensus 303 ~~~~i~~l~~~~~~-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg 379 (450)
..+...++.+-... ...++...-+.-.+++......+..+..... ........+..+.+++ ++.+++..|+
T Consensus 438 e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~------~~~~~~~~in~vVs~~~~~~~~~~hed~ 511 (577)
T KOG0642|consen 438 EHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSAS------PGPRRYPQINKVVSHPTADITFTAHEDR 511 (577)
T ss_pred ccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCC------CcccccCccceEEecCCCCeeEecccCC
Confidence 22334555554322 1222222222233333333322211111000 0000112345555553 4899999999
Q ss_pred eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 380 TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 380 ~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
.|+++|..++ ..+.....|...++++++.|++. +|++++.||.+++|.+
T Consensus 512 ~Ir~~dn~~~--------~~l~s~~a~~~svtslai~~ng~-------------~l~s~s~d~sv~l~kl 560 (577)
T KOG0642|consen 512 SIRFFDNKTG--------KILHSMVAHKDSVTSLAIDPNGP-------------YLMSGSHDGSVRLWKL 560 (577)
T ss_pred ceeccccccc--------ccchheeeccceecceeecCCCc-------------eEEeecCCceeehhhc
Confidence 9999998875 77888889999999999999999 9999999999999986
No 178
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.85 E-value=9.2e-20 Score=161.17 Aligned_cols=269 Identities=15% Similarity=0.223 Sum_probs=199.8
Q ss_pred ccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEE
Q 041325 13 RNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYG 90 (450)
Q Consensus 13 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~t 90 (450)
.+--++|.|+++.+..+.. .+.-.+....+..+++|+ ||.+.|.|++| ||+++|+
T Consensus 14 ci~d~afkPDGsqL~lAAg---------------------~rlliyD~ndG~llqtLK--gHKDtVycVAys~dGkrFAS 70 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG---------------------SRLLVYDTSDGTLLQPLK--GHKDTVYCVAYAKDGKRFAS 70 (1081)
T ss_pred chheeEECCCCceEEEecC---------------------CEEEEEeCCCcccccccc--cccceEEEEEEccCCceecc
Confidence 4445566666666655433 344455666778899999 99999999999 8999999
Q ss_pred eeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcc
Q 041325 91 GSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKL 168 (450)
Q Consensus 91 gs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 168 (450)
|+.|..|.+|+..-....+ ..|++.|.|+.|+|-. |++++- ...-+|..+.......
T Consensus 71 G~aDK~VI~W~~klEG~Lk--------------YSH~D~IQCMsFNP~~h~LasCsL-sdFglWS~~qK~V~K~------ 129 (1081)
T KOG1538|consen 71 GSADKSVIIWTSKLEGILK--------------YSHNDAIQCMSFNPITHQLASCSL-SDFGLWSPEQKSVSKH------ 129 (1081)
T ss_pred CCCceeEEEecccccceee--------------eccCCeeeEeecCchHHHhhhcch-hhccccChhhhhHHhh------
Confidence 9999999999865444333 4899999999999866 777765 4577888765521100
Q ss_pred cccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEe
Q 041325 169 KNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESV 248 (450)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 248 (450)
.....+.+++|..||++++.|-.+|+|.+-+-.. +....+
T Consensus 130 ---------------------------------------kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~g-Eek~~I 169 (1081)
T KOG1538|consen 130 ---------------------------------------KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNG-EEKVKI 169 (1081)
T ss_pred ---------------------------------------hhheeEEEeeecCCCcEEEEeccCceEEeecCCC-CcceEE
Confidence 1234788999999999999999999999987643 333333
Q ss_pred e--cccccceEEEEEeecCC----cEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEe
Q 041325 249 K--NAHDDAINAIVVSKSND----GFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSG 322 (450)
Q Consensus 249 ~--~~~~~~v~~~~~~~~~~----~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g 322 (450)
. .+..++|.+++|+|... ..+++.....++.+|.+.... +..-....-...|+.+.++|.+++.|
T Consensus 170 ~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~---------Igk~r~L~FdP~CisYf~NGEy~LiG 240 (1081)
T KOG1538|consen 170 ERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQ---------IGKDRALNFDPCCISYFTNGEYILLG 240 (1081)
T ss_pred eCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEeccee---------ecccccCCCCchhheeccCCcEEEEc
Confidence 3 24678999999998543 257888888888888764432 22222334456789999999999999
Q ss_pred eCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCC
Q 041325 323 ACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 323 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~ 388 (450)
+.|+.+++|..+ |- ...+......+|+.+...|+ +++.|+.||+|..|++..
T Consensus 241 Gsdk~L~~fTR~-Gv-------------rLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 241 GSDKQLSLFTRD-GV-------------RLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred cCCCceEEEeec-Ce-------------EEeeccccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 999999999754 32 22455556788988888754 999999999999998754
No 179
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.84 E-value=2e-18 Score=162.66 Aligned_cols=361 Identities=15% Similarity=0.166 Sum_probs=210.7
Q ss_pred CCCCccceeeeEEeecCCCcceEEEEE---eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEE
Q 041325 57 APAASEHQCSATLKVKGNSSYIPSLAI---AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSL 133 (450)
Q Consensus 57 ~~~~~~~~~~~~l~~~~h~~~v~~~~~---d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 133 (450)
..+.+.+.++.+|. .|...|..++. ++.+++|||.||+|++||........ ........+...+..+.++
T Consensus 1032 ~gW~p~G~lVAhL~--Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~-----~s~rS~ltys~~~sr~~~v 1104 (1431)
T KOG1240|consen 1032 PGWNPRGILVAHLH--EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG-----GSARSELTYSPEGSRVEKV 1104 (1431)
T ss_pred CCCCccceEeehhh--hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc-----ceeeeeEEEeccCCceEEE
Confidence 34578899999998 99999999988 46899999999999999986533110 0111122233345667777
Q ss_pred EEe--CCeEEEEeCCCeEEEEEcCCCceeEEe-----ccCcccccceeeeeeccCCCcc-eeEeeecCceEEEeecce--
Q 041325 134 VVL--GDKLFSAHQDHKIRVWKIDNNTSAYYS-----TSGKLKNKYYERIATLPTLNDR-FTKCFLANNYVQVRRHKK-- 203 (450)
Q Consensus 134 ~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-- 203 (450)
... ++.++.++.||.|++.+++........ .........+..+......... ..+.......+..++...
T Consensus 1105 t~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~ 1184 (1431)
T KOG1240|consen 1105 TMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRH 1184 (1431)
T ss_pred EeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhh
Confidence 665 455999999999999999874221111 1111111222222222222222 222222223333332211
Q ss_pred ----eeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCC--cE-EEEEc-CC
Q 041325 204 ----CTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSND--GF-VYTGS-AD 275 (450)
Q Consensus 204 ----~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~-l~~~~-~d 275 (450)
.......+.|++++.+|.++++++|...|.+.+||++-+..+..+..++..+++.+..+|... .. +.++. ..
T Consensus 1185 ~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~ 1264 (1431)
T KOG1240|consen 1185 DAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSN 1264 (1431)
T ss_pred hHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCC
Confidence 122335678999999999999999999999999999999999999877888999999888665 34 44444 58
Q ss_pred CcEEEEeCcchhhhccc----cchhhhhHh-------hcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCC
Q 041325 276 TKIKVWKKLRAALQVNK----KHSLVQTLE-------KHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDD 344 (450)
Q Consensus 276 g~i~vwd~~~~~~~~~~----~~~~~~~~~-------~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~ 344 (450)
+.|.+|++.++.++..- ....+.... .+.-......+..-+..+++|+.|..|+.||....+...
T Consensus 1265 nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss---- 1340 (1431)
T KOG1240|consen 1265 NEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISS---- 1340 (1431)
T ss_pred CceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccccc----
Confidence 89999999887643211 000111111 011112223334345689999999999999988644220
Q ss_pred CCCceeeeccccCCccceEEEEEe-CCeEEEEeCCCeE-EEeeCCCCcc-----ccCCCceeEEEecCCCcceEEEEEEe
Q 041325 345 DSGHMVLKGALRGHTKAILCLAVV-SNLLFSGSSDNTI-RIWRRSSSVT-----DHQKGYSCLAVLEGHRRPVKCLTAVV 417 (450)
Q Consensus 345 ~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~v-~iwd~~~~~~-----~~~~~~~~~~~~~~h~~~v~~l~~~~ 417 (450)
....+..........+ ...++.|+.--.. .+.....+.. ...........-..|..+|+++++..
T Consensus 1341 --------~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~ 1412 (1431)
T KOG1240|consen 1341 --------YAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLK 1412 (1431)
T ss_pred --------ccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhc
Confidence 0111111111111111 1122222211000 0011111000 00000111222346889999999887
Q ss_pred cCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 418 DSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
.... +|++++.||.|+||.
T Consensus 1413 ~~q~------------llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1413 SEQP------------LLVSSSRDGVIKIWK 1431 (1431)
T ss_pred cCcc------------EEEEecCCCeeeecC
Confidence 7653 899999999999995
No 180
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.84 E-value=2.7e-19 Score=158.24 Aligned_cols=268 Identities=15% Similarity=0.234 Sum_probs=202.4
Q ss_pred ceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEE
Q 041325 77 YIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVW 152 (450)
Q Consensus 77 ~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw 152 (450)
.|..++| ||..|+.+.. ..+.+||.+.+..... +.+|.+.|.+++|+.|+ +++|+.|+.|.+|
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqt------------LKgHKDtVycVAys~dGkrFASG~aDK~VI~W 80 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQP------------LKGHKDTVYCVAYAKDGKRFASGSADKSVIIW 80 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccc------------cccccceEEEEEEccCCceeccCCCceeEEEe
Confidence 7888999 8888887755 5799999999987776 88999999999999776 9999999999999
Q ss_pred EcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCC
Q 041325 153 KIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDR 232 (450)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 232 (450)
+-.-.... -..|.+.|.|+.|+|-...|++++. .
T Consensus 81 ~~klEG~L---------------------------------------------kYSH~D~IQCMsFNP~~h~LasCsL-s 114 (1081)
T KOG1538|consen 81 TSKLEGIL---------------------------------------------KYSHNDAIQCMSFNPITHQLASCSL-S 114 (1081)
T ss_pred ccccccee---------------------------------------------eeccCCeeeEeecCchHHHhhhcch-h
Confidence 87654211 1149999999999998888998875 3
Q ss_pred cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEE
Q 041325 233 TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALAL 312 (450)
Q Consensus 233 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 312 (450)
..-+|........ .. .....+.+.+|..+ +.+++.|-.||+|.+-+-...+ ...+..-.+.+++|++++|
T Consensus 115 dFglWS~~qK~V~-K~--kss~R~~~CsWtnD-GqylalG~~nGTIsiRNk~gEe------k~~I~Rpgg~Nspiwsi~~ 184 (1081)
T KOG1538|consen 115 DFGLWSPEQKSVS-KH--KSSSRIICCSWTND-GQYLALGMFNGTISIRNKNGEE------KVKIERPGGSNSPIWSICW 184 (1081)
T ss_pred hccccChhhhhHH-hh--hhheeEEEeeecCC-CcEEEEeccCceEEeecCCCCc------ceEEeCCCCCCCCceEEEe
Confidence 5678887654322 22 24567788888863 4489999999999998643221 1123333457889999999
Q ss_pred cCCC-----CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEee
Q 041325 313 STDG-----TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWR 385 (450)
Q Consensus 313 ~~~~-----~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd 385 (450)
+|+. ..+++.....++..|.+. |+.+ ..-..-.-.-.|+++. |.+++.|+.|+.+.+|-
T Consensus 185 ~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~I-------------gk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fT 250 (1081)
T KOG1538|consen 185 NPSSGEGRNDILAVADWGQTLSFYQLS-GKQI-------------GKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFT 250 (1081)
T ss_pred cCCCCCCccceEEEEeccceeEEEEec-ceee-------------cccccCCCCchhheeccCCcEEEEccCCCceEEEe
Confidence 9953 477888888888888775 3322 1111111223566665 66999999999999997
Q ss_pred CCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 386 RSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
.+ ...+.++......|+.++..|+++ .++.|+.||+|-.|++
T Consensus 251 R~---------GvrLGTvg~~D~WIWtV~~~PNsQ-------------~v~~GCqDGTiACyNl 292 (1081)
T KOG1538|consen 251 RD---------GVRLGTVGEQDSWIWTVQAKPNSQ-------------YVVVGCQDGTIACYNL 292 (1081)
T ss_pred ec---------CeEEeeccccceeEEEEEEccCCc-------------eEEEEEccCeeehhhh
Confidence 55 256677777788999999999999 9999999999988875
No 181
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.84 E-value=4e-19 Score=147.49 Aligned_cols=254 Identities=16% Similarity=0.224 Sum_probs=174.3
Q ss_pred ceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeee---cCCCCcceeEEecCCCceEEEEEeCCe---EEEEeCCCeEE
Q 041325 77 YIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITS---TDVGDHANVVATGNGDAVKSLVVLGDK---LFSAHQDHKIR 150 (450)
Q Consensus 77 ~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~---~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~ 150 (450)
.|+..+||..++++--. -.-.+|+...+....... ...-....-...||+++|..++|+|-. +++|+.|.+|.
T Consensus 29 rVs~~tWDS~fcavNPk-fiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~ 107 (472)
T KOG0303|consen 29 RVSRVTWDSSFCAVNPK-FVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVM 107 (472)
T ss_pred eeeeeeccccccccCCc-eEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEE
Confidence 47777776555443321 122355554443221111 111111222467999999999998544 99999999999
Q ss_pred EEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEEEEEe
Q 041325 151 VWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLYSTS 229 (450)
Q Consensus 151 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~ 229 (450)
+|++..+... .. -..+...+.+|...|--++|+| ..+.|++++
T Consensus 108 vW~IPe~~l~----------------~~--------------------ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag 151 (472)
T KOG0303|consen 108 VWQIPENGLT----------------RD--------------------LTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG 151 (472)
T ss_pred EEECCCcccc----------------cC--------------------cccceEEEeecceeEEEEeecccchhhHhhcc
Confidence 9999876210 00 0134556778999999999999 567889999
Q ss_pred CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhccc-ceE
Q 041325 230 WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS-AVT 308 (450)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~i~ 308 (450)
.|.+|.+||+.+++.+..+. |.+.|.++.|+.+ ..++++++.|+.|||||.++++ .+..-.+|.+ .-.
T Consensus 152 ~Dn~v~iWnv~tgeali~l~--hpd~i~S~sfn~d-Gs~l~TtckDKkvRv~dpr~~~--------~v~e~~~heG~k~~ 220 (472)
T KOG0303|consen 152 SDNTVSIWNVGTGEALITLD--HPDMVYSMSFNRD-GSLLCTTCKDKKVRVIDPRRGT--------VVSEGVAHEGAKPA 220 (472)
T ss_pred CCceEEEEeccCCceeeecC--CCCeEEEEEeccC-CceeeeecccceeEEEcCCCCc--------EeeecccccCCCcc
Confidence 99999999999999988886 9999999999984 4489999999999999998887 4554445553 345
Q ss_pred EEEEcCCCCEEEEee---CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC---eEEEEeCCCeEE
Q 041325 309 ALALSTDGTVLYSGA---CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN---LLFSGSSDNTIR 382 (450)
Q Consensus 309 ~l~~~~~~~~l~~g~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~~~dg~v~ 382 (450)
.+-|-.+|.++.+|. .+..+-+||..+-+.. .....+.. +..|.---|+++ ..++|-.|+.||
T Consensus 221 Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP----------~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IR 289 (472)
T KOG0303|consen 221 RAIFLASGKIFTTGFSRMSERQIALWDPNNLEEP----------IALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIR 289 (472)
T ss_pred eeEEeccCceeeeccccccccceeccCcccccCc----------ceeEEecc-CCceEEeeecCCCCEEEEEecCCcceE
Confidence 566777888666664 3678999998754311 11122322 334444445544 456777899999
Q ss_pred EeeCCCC
Q 041325 383 IWRRSSS 389 (450)
Q Consensus 383 iwd~~~~ 389 (450)
.|.+...
T Consensus 290 YyEit~d 296 (472)
T KOG0303|consen 290 YFEITNE 296 (472)
T ss_pred EEEecCC
Confidence 9998864
No 182
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=1.9e-17 Score=151.31 Aligned_cols=377 Identities=19% Similarity=0.248 Sum_probs=238.3
Q ss_pred ccccCCCCCccceeeeEEeecCCCcceEEEEEe---C--CEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEe--
Q 041325 52 SFRKQAPAASEHQCSATLKVKGNSSYIPSLAIA---G--KLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVAT-- 124 (450)
Q Consensus 52 ~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~d---~--~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~-- 124 (450)
......++..++++++.|. +|..+++.+.++ . .++++++.||.|++||...+.+........+........
T Consensus 36 ~~~V~VyS~~Tg~~i~~l~--~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~ 113 (792)
T KOG1963|consen 36 GNFVKVYSTATGECITSLE--DHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQ 113 (792)
T ss_pred CCEEEEEecchHhhhhhcc--cccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEEEEecCCceeEEEechhH
Confidence 3556788899999999888 999999999992 3 678899999999999999888766543332211111000
Q ss_pred ---------------------cC----CC-------------------ceEEEEEeCCe-EEEEeCCCeEEEEEcCCCce
Q 041325 125 ---------------------GN----GD-------------------AVKSLVVLGDK-LFSAHQDHKIRVWKIDNNTS 159 (450)
Q Consensus 125 ---------------------~h----~~-------------------~v~~l~~~~~~-l~s~~~dg~i~iw~~~~~~~ 159 (450)
.+ .. .-.+|.+++.+ +.....+..+.+|+......
T Consensus 114 a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~~~i~~~~~~~~~~v~~~~~ 193 (792)
T KOG1963|consen 114 ADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEFKGIVHMCKIHIYFVPKHTK 193 (792)
T ss_pred hCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceEEEEEEeeeEEEEEecccce
Confidence 00 00 01223333333 44444455677777776541
Q ss_pred eEEeccCcccccc-eeeeeeccCCCcceeEeeecCceEEEeecce--------eeeecCCCceEEEEEccCCCEEEEEeC
Q 041325 160 AYYSTSGKLKNKY-YERIATLPTLNDRFTKCFLANNYVQVRRHKK--------CTWVHHVDTVSALALSSDGSLLYSTSW 230 (450)
Q Consensus 160 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~v~~~~~~~~~~~l~~~~~ 230 (450)
............. ..+.. -...++..+....++.+.+++... ..+..|.+.|++++|+++|.+|++|+.
T Consensus 194 ~~~~~~~~~~Htf~~t~~~--~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~ 271 (792)
T KOG1963|consen 194 HTSSRDITVHHTFNITCVA--LSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGR 271 (792)
T ss_pred eeccchhhhhhcccceeEE--eccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeeccc
Confidence 1111111111111 11111 122445555555556666654433 346679999999999999999999999
Q ss_pred CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccc--hh-hhhHhhcccce
Q 041325 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKH--SL-VQTLEKHKSAV 307 (450)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~--~~-~~~~~~~~~~i 307 (450)
.+.+.+|.+.+++ +++.+.-.++|..+.++|+++ ..+....|+.|.+....+......-.. .. ...-....+-.
T Consensus 272 E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~-~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~ 348 (792)
T KOG1963|consen 272 EGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSD-LYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLT 348 (792)
T ss_pred ceEEEEEeecCCC--cccccccCCeeEEEEEcCCCC-eEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccc
Confidence 9999999999988 444446788999999998665 666777799999998755431110000 00 00001123446
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCC-------CC-----------------------------------
Q 041325 308 TALALSTDGTVLYSGACDRSILVWERDQGNYIVDGD-------DD----------------------------------- 345 (450)
Q Consensus 308 ~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~-------~~----------------------------------- 345 (450)
+.++++|.-+.++-.+..|.|.+||+.+.+.+..+. ++
T Consensus 349 t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~ 428 (792)
T KOG1963|consen 349 TGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDG 428 (792)
T ss_pred eeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCc
Confidence 778888876777778888999999987654432111 00
Q ss_pred ------------CCceee-eccccCCccceEEEEEe----CCeEEEEeCCCeEEEeeCCCCcc--ccCCCceeEEEecCC
Q 041325 346 ------------SGHMVL-KGALRGHTKAILCLAVV----SNLLFSGSSDNTIRIWRRSSSVT--DHQKGYSCLAVLEGH 406 (450)
Q Consensus 346 ------------~~~~~~-~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~v~iwd~~~~~~--~~~~~~~~~~~~~~h 406 (450)
.....+ ......|...+.+..+. .+..++++.||.+++|-+..... .....+.|...-..|
T Consensus 429 e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~ 508 (792)
T KOG1963|consen 429 EVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYH 508 (792)
T ss_pred eEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccc
Confidence 000000 01223455555544443 23789999999999998854322 224457777766678
Q ss_pred CcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 407 RRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 407 ~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
..++++++|+.||. +++.+.|++|.+||-
T Consensus 509 k~~i~a~~fs~dGs--------------lla~s~~~~Itiwd~ 537 (792)
T KOG1963|consen 509 KTPITALCFSQDGS--------------LLAVSFDDTITIWDY 537 (792)
T ss_pred cCcccchhhcCCCc--------------EEEEecCCEEEEecC
Confidence 99999999999997 777788999999985
No 183
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=2.3e-17 Score=153.86 Aligned_cols=279 Identities=33% Similarity=0.589 Sum_probs=208.2
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCC-ceeeeecCCCCcceeEEecCC-CceEEEEE-eCCe---EEEE-
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNN-YVNITSTDVGDHANVVATGNG-DAVKSLVV-LGDK---LFSA- 143 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~-~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~-~~~~---l~s~- 143 (450)
+|...+.++.+ ++..++.++.|+.+.+|+..... .... +.++. ..+..+.+ .++. ++..
T Consensus 63 ~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (466)
T COG2319 63 GHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKS------------LEGLHDSSVSKLALSSPDGNSILLASS 130 (466)
T ss_pred eccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEE------------EeccCCCceeeEEEECCCcceEEeccC
Confidence 89999999999 68889999999999999998876 3322 22322 35666666 4333 3443
Q ss_pred eCCCeEEEEEcCC-CceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCC
Q 041325 144 HQDHKIRVWKIDN-NTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDG 222 (450)
Q Consensus 144 ~~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 222 (450)
..|+.+.+|+... . .....+..|...|..++|+|++
T Consensus 131 ~~d~~~~~~~~~~~~-------------------------------------------~~~~~~~~~~~~v~~~~~~~~~ 167 (466)
T COG2319 131 SLDGTVKLWDLSTPG-------------------------------------------KLIRTLEGHSESVTSLAFSPDG 167 (466)
T ss_pred CCCccEEEEEecCCC-------------------------------------------eEEEEEecCcccEEEEEECCCC
Confidence 4499999999987 3 1222344688899999999999
Q ss_pred CEEEEEeC-CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhh-hH
Q 041325 223 SLLYSTSW-DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQ-TL 300 (450)
Q Consensus 223 ~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~-~~ 300 (450)
..+++++. |+.+++|+...+..+..+. .|...+.+++++|.....+++++.|+.|++||...+. ... .+
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~--------~~~~~~ 238 (466)
T COG2319 168 KLLASGSSLDGTIKLWDLRTGKPLSTLA-GHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGK--------LLRSTL 238 (466)
T ss_pred CEEEecCCCCCceEEEEcCCCceEEeec-cCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCc--------EEeeec
Confidence 98888885 9999999999888888887 6899999999996444255555999999999876443 333 46
Q ss_pred hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCC
Q 041325 301 EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSD 378 (450)
Q Consensus 301 ~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~d 378 (450)
..|.... ...|+|++.++++++.|+.+++|+....... . .....|...+.++.+.+ ..+++++.|
T Consensus 239 ~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-----------~-~~~~~~~~~v~~~~~~~~~~~~~~~~~d 305 (466)
T COG2319 239 SGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSL-----------L-RTLSGHSSSVLSVAFSPDGKLLASGSSD 305 (466)
T ss_pred CCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcE-----------E-EEEecCCccEEEEEECCCCCEEEEeeCC
Confidence 6666664 3389999989999999999999999866531 0 11267788999999986 577779999
Q ss_pred CeEEEeeCCCCccccCCCceeEEEe--cCCCcceEEEEEEecC-CCCCCCCCCCCceEEEEEc-ccCCcEEEEEeC
Q 041325 379 NTIRIWRRSSSVTDHQKGYSCLAVL--EGHRRPVKCLTAVVDS-DYSNRNSDHSSTSFLVYSG-SLDCEIKIWQIR 450 (450)
Q Consensus 379 g~v~iwd~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~~~~-~~~~~~~~~~~~~~~l~s~-~~Dg~i~iw~l~ 450 (450)
+.+++|+.... ...... ..|...+..+.| ... . .++.+ ..|+.+.+|++.
T Consensus 306 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~~~-------------~~~~~~~~d~~~~~~~~~ 359 (466)
T COG2319 306 GTVRLWDLETG--------KLLSSLTLKGHEGPVSSLSF-SPDGS-------------LLVSGGSDDGTIRLWDLR 359 (466)
T ss_pred CcEEEEEcCCC--------ceEEEeeecccCCceEEEEE-CCCCC-------------EEEEeecCCCcEEeeecC
Confidence 99999988764 222333 477778999999 433 3 44444 788999999863
No 184
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.83 E-value=2.8e-20 Score=168.26 Aligned_cols=273 Identities=20% Similarity=0.314 Sum_probs=198.9
Q ss_pred eeeeEEeecCCCcceEEEEEe--CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--
Q 041325 64 QCSATLKVKGNSSYIPSLAIA--GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~d--~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 139 (450)
+.++.|. ||..+|.|+.|| |.++++|+.|..|+||..++..+... ..||.+.|+.++.+.+.
T Consensus 181 k~ikrLl--gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs------------~rGhs~ditdlavs~~n~~ 246 (1113)
T KOG0644|consen 181 KNIKRLL--GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLAS------------CRGHSGDITDLAVSSNNTM 246 (1113)
T ss_pred HHHHHHH--hhhhheeeeeeccccceEeecCccceeeeeeccchhhhcc------------CCCCccccchhccchhhhh
Confidence 3445566 999999999994 99999999999999999998887766 77999999999998666
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS 219 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (450)
+++++.|..|++|.+..+ .+...+.+|++.|++++|+
T Consensus 247 iaaaS~D~vIrvWrl~~~-------------------------------------------~pvsvLrghtgavtaiafs 283 (1113)
T KOG0644|consen 247 IAAASNDKVIRVWRLPDG-------------------------------------------APVSVLRGHTGAVTAIAFS 283 (1113)
T ss_pred hhhcccCceEEEEecCCC-------------------------------------------chHHHHhccccceeeeccC
Confidence 889999999999999988 2344556899999999999
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCeEEEEe----ecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccch
Q 041325 220 SDGSLLYSTSWDRTFKIWRTSDFRCLESV----KNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHS 295 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 295 (450)
|-. +.+.||++++||.+ ...+... .......+.++.+.. ...-+++++.|+.-..|.+....
T Consensus 284 P~~----sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~-~~~~f~Tgs~d~ea~n~e~~~l~-------- 349 (1113)
T KOG0644|consen 284 PRA----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFEN-NGDRFLTGSRDGEARNHEFEQLA-------- 349 (1113)
T ss_pred ccc----cCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccc-cccccccccCCcccccchhhHhh--------
Confidence 954 67889999999997 2222211 112234555565553 22358999999999988763221
Q ss_pred hhhhHhhcccceEEEEEcCCC-CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC---Ce
Q 041325 296 LVQTLEKHKSAVTALALSTDG-TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS---NL 371 (450)
Q Consensus 296 ~~~~~~~~~~~i~~l~~~~~~-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~ 371 (450)
.+...+.-+.++.+. .+.+++-.+-.+.+|++.++... ..+.+|...+..+.+++ ..
T Consensus 350 ------~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~-------------H~l~ghsd~~yvLd~Hpfn~ri 410 (1113)
T KOG0644|consen 350 ------WRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLL-------------HNLMGHSDEVYVLDVHPFNPRI 410 (1113)
T ss_pred ------hhccceEEEeccccccccceeeeeeeEeeeeecccchhh-------------hhhcccccceeeeeecCCCcHh
Confidence 122222223333222 45666667888999999988644 67888999999998874 47
Q ss_pred EEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEE
Q 041325 372 LFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIW 447 (450)
Q Consensus 372 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw 447 (450)
..+++.||...|||+-.+. .......+|. .+..-+|+++|. .++....-|.+.|.
T Consensus 411 ~msag~dgst~iwdi~eg~-------pik~y~~gh~-kl~d~kFSqdgt-------------s~~lsd~hgql~i~ 465 (1113)
T KOG0644|consen 411 AMSAGYDGSTIIWDIWEGI-------PIKHYFIGHG-KLVDGKFSQDGT-------------SIALSDDHGQLYIL 465 (1113)
T ss_pred hhhccCCCceEeeecccCC-------cceeeecccc-eeeccccCCCCc-------------eEecCCCCCceEEe
Confidence 7899999999999998752 1122224554 456678999988 55555555555554
No 185
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.82 E-value=6.3e-18 Score=153.95 Aligned_cols=258 Identities=17% Similarity=0.185 Sum_probs=180.5
Q ss_pred CCcceEEEEE---eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC----eEEEEeCC
Q 041325 74 NSSYIPSLAI---AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD----KLFSAHQD 146 (450)
Q Consensus 74 h~~~v~~~~~---d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----~l~s~~~d 146 (450)
-...|+|+.| +..++|.|..+|.|.+||+..+..... .........|..+|+.+.|..+ .+++++.|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~------s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssD 314 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP------SGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSD 314 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC------cccccccccCCcCeEEEEEeccCCCCceEEEecC
Confidence 5678999999 799999999999999999988764211 1111234578999999999732 29999999
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLL 225 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l 225 (450)
|.|..|+++.-.......... ... +.. .-......+++++|.+ +...+
T Consensus 315 G~i~~W~~~~l~~P~e~~~~~----------~~~--------------------~~~-~~~~~~~~~t~~~F~~~~p~~F 363 (555)
T KOG1587|consen 315 GSICSWDTDMLSLPVEGLLLE----------SKK--------------------HKG-QQSSKAVGATSLKFEPTDPNHF 363 (555)
T ss_pred CcEeeeeccccccchhhcccc----------ccc--------------------ccc-cccccccceeeEeeccCCCceE
Confidence 999999877553210000000 000 000 0001233688999988 67789
Q ss_pred EEEeCCCcEEEEecCCCeE--------EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhh
Q 041325 226 YSTSWDRTFKIWRTSDFRC--------LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLV 297 (450)
Q Consensus 226 ~~~~~dg~i~iwd~~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 297 (450)
+.|+.+|.|.--+-...+. ...+. .|.++|.++.++|....++++++ |..+++|.-.. ...++
T Consensus 364 iVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~-~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~-------~~~Pl 434 (555)
T KOG1587|consen 364 IVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFI-THIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDV-------IASPL 434 (555)
T ss_pred EEEcCCcEEEEEeccCCccccccccccccccc-ccCcceEeeecCCCccceeeeec-cceeEeccccC-------CCCcc
Confidence 9999999998733322221 22233 68899999999998887777777 89999998751 22367
Q ss_pred hhHhhcccceEEEEEcCCC-CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEE
Q 041325 298 QTLEKHKSAVTALALSTDG-TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFS 374 (450)
Q Consensus 298 ~~~~~~~~~i~~l~~~~~~-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s 374 (450)
..+..+...+++++|||-. ..|+++..||.|.+||+.....- +......+....+.+.|+ +..|++
T Consensus 435 ~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~-----------Pv~s~~~~~~~l~~~~~s~~g~~lav 503 (555)
T KOG1587|consen 435 LSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEE-----------PVLSQKVCSPALTRVRWSPNGKLLAV 503 (555)
T ss_pred hhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccC-----------CcccccccccccceeecCCCCcEEEE
Confidence 7777778889999999954 57888888999999999854321 222333334455666666 458999
Q ss_pred EeCCCeEEEeeCCC
Q 041325 375 GSSDNTIRIWRRSS 388 (450)
Q Consensus 375 ~~~dg~v~iwd~~~ 388 (450)
|...|.+.+|++..
T Consensus 504 Gd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 504 GDANGTTHILKLSE 517 (555)
T ss_pred ecCCCcEEEEEcCc
Confidence 99999999999974
No 186
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=8.1e-18 Score=130.94 Aligned_cols=247 Identities=21% Similarity=0.225 Sum_probs=170.1
Q ss_pred ceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeee
Q 041325 129 AVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTW 206 (450)
Q Consensus 129 ~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (450)
.|.+-+++|.. |++|..+|.|.+..+.+.........+ +.+....
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~g---------------------------------k~~iv~e 58 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPG---------------------------------KLKIVPE 58 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCC---------------------------------Ccceeec
Confidence 34444555544 999999999999998765321111111 1122233
Q ss_pred ecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeE------EEEee-cc-----cccceEEEEEeecCCcEEEEEcC
Q 041325 207 VHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRC------LESVK-NA-----HDDAINAIVVSKSNDGFVYTGSA 274 (450)
Q Consensus 207 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~-~~-----~~~~v~~~~~~~~~~~~l~~~~~ 274 (450)
.+|.+++..++|. ..+|++|+ ||.|+-|..++... +...+ .. .--.|+++...|..+ -++.++.
T Consensus 59 qahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en-Si~~AgG 134 (325)
T KOG0649|consen 59 QAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN-SILFAGG 134 (325)
T ss_pred cccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC-cEEEecC
Confidence 5799999999998 44566666 69999998765322 11111 11 123688898988655 5555558
Q ss_pred CCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeecc
Q 041325 275 DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGA 354 (450)
Q Consensus 275 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 354 (450)
|+.++-||+++++ ..+++++|...|.++.--.....+++|++||++++||+++++.+......... ..
T Consensus 135 D~~~y~~dlE~G~--------i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~----~~ 202 (325)
T KOG0649|consen 135 DGVIYQVDLEDGR--------IQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNP----NL 202 (325)
T ss_pred CeEEEEEEecCCE--------EEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccCh----hh
Confidence 9999999998887 77889999999999988444556899999999999999999987544433222 22
Q ss_pred ccCC-ccceEEEEEeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceE
Q 041325 355 LRGH-TKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSF 433 (450)
Q Consensus 355 ~~~~-~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~ 433 (450)
+..| ...|.+++.+.+.|++|+.- .+.+|.+++. ...++..+. .+|..+.|..+
T Consensus 203 lRp~~g~wigala~~edWlvCGgGp-~lslwhLrss------e~t~vfpip---a~v~~v~F~~d--------------- 257 (325)
T KOG0649|consen 203 LRPDWGKWIGALAVNEDWLVCGGGP-KLSLWHLRSS------ESTCVFPIP---ARVHLVDFVDD--------------- 257 (325)
T ss_pred cCcccCceeEEEeccCceEEecCCC-ceeEEeccCC------CceEEEecc---cceeEeeeecc---------------
Confidence 3333 35689999999999887644 5899999974 123444444 45667777665
Q ss_pred EEEEcccCCcEEEEEe
Q 041325 434 LVYSGSLDCEIKIWQI 449 (450)
Q Consensus 434 ~l~s~~~Dg~i~iw~l 449 (450)
.+++++....|.-|.+
T Consensus 258 ~vl~~G~g~~v~~~~l 273 (325)
T KOG0649|consen 258 CVLIGGEGNHVQSYTL 273 (325)
T ss_pred eEEEeccccceeeeee
Confidence 6778887777777764
No 187
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.81 E-value=3.6e-17 Score=132.47 Aligned_cols=215 Identities=11% Similarity=0.074 Sum_probs=166.5
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCe
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHK 148 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~ 148 (450)
--..+|+|.+| |+..+|.+.....|.|+.....++-.. ...+..|...|++++|++.. |++++.|..
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~---------~htls~Hd~~vtgvdWap~snrIvtcs~drn 78 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEP---------AHTLSEHDKIVTGVDWAPKSNRIVTCSHDRN 78 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCcee---------ceehhhhCcceeEEeecCCCCceeEccCCCC
Confidence 34579999999 799999999999999999877662222 12367899999999999765 999999999
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST 228 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 228 (450)
-++|....+. ...+...+..++..++++.|+|.++.|++|
T Consensus 79 ayVw~~~~~~----------------------------------------~WkptlvLlRiNrAAt~V~WsP~enkFAVg 118 (361)
T KOG1523|consen 79 AYVWTQPSGG----------------------------------------TWKPTLVLLRINRAATCVKWSPKENKFAVG 118 (361)
T ss_pred ccccccCCCC----------------------------------------eeccceeEEEeccceeeEeecCcCceEEec
Confidence 9999984431 123444556788899999999999999999
Q ss_pred eCCCcEEEEecCCCeE---EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc----------cccch
Q 041325 229 SWDRTFKIWRTSDFRC---LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV----------NKKHS 295 (450)
Q Consensus 229 ~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~----------~~~~~ 295 (450)
+....|.+|-++...- -+.++..+...|.++.|+| ++-++++|+.|+..|++..--..... .....
T Consensus 119 Sgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhp-nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~ 197 (361)
T KOG1523|consen 119 SGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHP-NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQ 197 (361)
T ss_pred cCccEEEEEEEecccceehhhhhCCccccceeeeeccC-CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHH
Confidence 9999999998875432 2233446778899999998 55589999999999999643222111 01123
Q ss_pred hhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCc
Q 041325 296 LVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGN 337 (450)
Q Consensus 296 ~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~ 337 (450)
++.++....+.+..+.|+|+|..|+-.+.|+.+.+-|.....
T Consensus 198 lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 198 LMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred HHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 455555567899999999999999999999999999887553
No 188
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.79 E-value=6.2e-18 Score=148.91 Aligned_cols=205 Identities=17% Similarity=0.200 Sum_probs=144.4
Q ss_pred CCceEEEEEcc-CCCEEEEEeCCCcEEEEecCCC-------eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEE
Q 041325 210 VDTVSALALSS-DGSLLYSTSWDRTFKIWRTSDF-------RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVW 281 (450)
Q Consensus 210 ~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw 281 (450)
...|+.+.|+| |...|+.++.||.|++|.+..+ +....+. .|...|+++.|+|-....|++++.|-+|++|
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt-~h~eKI~slRfHPLAadvLa~asyd~Ti~lW 705 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILT-IHGEKITSLRFHPLAADVLAVASYDSTIELW 705 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeee-cccceEEEEEecchhhhHhhhhhccceeeee
Confidence 34799999999 8889999999999999998753 2334444 7999999999999888899999999999999
Q ss_pred eCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccc
Q 041325 282 KKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA 361 (450)
Q Consensus 282 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (450)
|+++.+ ....+.+|.+.|..++|+|||+.+++.+.||+|++|+.++++.... ......+..+.
T Consensus 706 Dl~~~~--------~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~---------Eg~gpvgtRgA 768 (1012)
T KOG1445|consen 706 DLANAK--------LYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVY---------EGKGPVGTRGA 768 (1012)
T ss_pred ehhhhh--------hhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccc---------cCCCCccCcce
Confidence 998877 7778899999999999999999999999999999999987653210 00011111222
Q ss_pred eEEEEEeCCeEEEEeCC----CeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEE
Q 041325 362 ILCLAVVSNLLFSGSSD----NTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYS 437 (450)
Q Consensus 362 v~~~~~~~~~l~s~~~d----g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s 437 (450)
-.-.+.++.++++.+.| +.|.+||.++-. ...+.. ..+...|.-- .....-..+.+++|
T Consensus 769 Ri~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~------~~pl~t--------~~lDvaps~L---vP~YD~Ds~~lflt 831 (1012)
T KOG1445|consen 769 RILWACDGRIVIVVGFDKSSERQVQMYDAQTLD------LRPLYT--------QVLDVAPSPL---VPHYDYDSNVLFLT 831 (1012)
T ss_pred eEEEEecCcEEEEecccccchhhhhhhhhhhcc------CCccee--------eeecccCccc---cccccCCCceEEEe
Confidence 22233347777777665 457888876420 111211 1122222110 00011122348899
Q ss_pred cccCCcEEEEEe
Q 041325 438 GSLDCEIKIWQI 449 (450)
Q Consensus 438 ~~~Dg~i~iw~l 449 (450)
|-.|..|.+|++
T Consensus 832 GKGD~~v~~yEv 843 (1012)
T KOG1445|consen 832 GKGDRFVNMYEV 843 (1012)
T ss_pred cCCCceEEEEEe
Confidence 999999999986
No 189
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.79 E-value=1.3e-18 Score=136.97 Aligned_cols=291 Identities=16% Similarity=0.181 Sum_probs=191.3
Q ss_pred ccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE-eCCEEEEeeCCCcEEEecCCCCCcee
Q 041325 31 SNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVN 109 (450)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~ 109 (450)
+++++-|+.... .+.-........+..++.+.+-.+++ .|...|+.+.. -+..|.+-+.|+.+.+|++.....+.
T Consensus 16 ~v~s~~fqa~~r---L~sg~~~G~V~~w~lqt~r~~~~~r~-~g~~~it~lq~~p~d~l~tqgRd~~L~lw~ia~s~~i~ 91 (323)
T KOG0322|consen 16 SVTSVLFQANER---LMSGLSVGIVKMWVLQTERDLPLIRL-FGRLFITNLQSIPNDSLDTQGRDPLLILWTIAYSAFIS 91 (323)
T ss_pred hheehhhccchh---hhcccccceEEEEEeecCccchhhhh-hccceeeceeecCCcchhhcCCCceEEEEEccCcceEE
Confidence 344444443332 34445556667777777777777773 46678888888 56899999999999999998766443
Q ss_pred eeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCC-eEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeE
Q 041325 110 ITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDH-KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTK 188 (450)
Q Consensus 110 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (450)
+ |.-.++++.|.+-.+...+... ..-.++-+..... ......+..-.
T Consensus 92 i---------------~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~-----------------h~~D~g~~tqv 139 (323)
T KOG0322|consen 92 I---------------HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDET-----------------HKQDGGDTTQV 139 (323)
T ss_pred E---------------eeeeccccccccceeccCCCcchhheecCCcccchh-----------------hhhccCcccee
Confidence 3 4456667777665555554433 1112211111000 00000000000
Q ss_pred eeecCceEEEeecceeeeecCCCceEEEEEcc-CCC--EEEEEeCCCcEEEEecCCCeEEEEee---------cccccce
Q 041325 189 CFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGS--LLYSTSWDRTFKIWRTSDFRCLESVK---------NAHDDAI 256 (450)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~--~l~~~~~dg~i~iwd~~~~~~~~~~~---------~~~~~~v 256 (450)
.+... .-....+.+.|..+.. ++. ++++|.++|.+.+||+.++..+..+. ..|..+|
T Consensus 140 --------~i~dd---~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpv 208 (323)
T KOG0322|consen 140 --------QIADD---SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPV 208 (323)
T ss_pred --------EccCc---hhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcc
Confidence 00000 0113445677776543 333 46778899999999999985444332 2688899
Q ss_pred EEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCC
Q 041325 257 NAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQG 336 (450)
Q Consensus 257 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~ 336 (450)
.++.+.+.-+ .=++|+.+..+..|++.... ...+.-....-.+-.+..+..-||++.+++++.|+.|+||..++.
T Consensus 209 lsldyas~~~-rGisgga~dkl~~~Sl~~s~----gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl 283 (323)
T KOG0322|consen 209 LSLDYASSCD-RGISGGADDKLVMYSLNHST----GSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL 283 (323)
T ss_pred eeeeechhhc-CCcCCCccccceeeeecccc----CcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC
Confidence 9999986433 55778888889999986542 111122222334456888999999999999999999999999998
Q ss_pred ceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeC
Q 041325 337 NYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRR 386 (450)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~ 386 (450)
+++ ..++.|...|++++|+++ ++|+++.|++|.+|++
T Consensus 284 ~pL-------------AVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 284 NPL-------------AVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred Cch-------------hhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 765 788999999999999976 9999999999999986
No 190
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.78 E-value=8.8e-16 Score=126.95 Aligned_cols=236 Identities=17% Similarity=0.287 Sum_probs=166.1
Q ss_pred CCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCC--CeE
Q 041325 74 NSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQD--HKI 149 (450)
Q Consensus 74 h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~d--g~i 149 (450)
....+..+.| |...|..|+.|| -++++.+....... .......|..+-|+...++..+.+ +.+
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~------------~~~~~~~IvEmLFSSSLvaiV~~~qpr~L 70 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFS------------KDTEGVSIVEMLFSSSLVAIVSIKQPRKL 70 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhc------------ccCCCeEEEEeecccceeEEEecCCCceE
Confidence 3456777778 677888899888 56777655432110 112234677777888875555444 458
Q ss_pred EEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe
Q 041325 150 RVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS 229 (450)
Q Consensus 150 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 229 (450)
++.++..... +..+ ....+|.++.++. +.|+++-
T Consensus 71 kv~~~Kk~~~----------------ICe~----------------------------~fpt~IL~VrmNr--~RLvV~L 104 (391)
T KOG2110|consen 71 KVVHFKKKTT----------------ICEI----------------------------FFPTSILAVRMNR--KRLVVCL 104 (391)
T ss_pred EEEEcccCce----------------EEEE----------------------------ecCCceEEEEEcc--ceEEEEE
Confidence 8888887632 1111 1334788888864 4566655
Q ss_pred CCCcEEEEecCCCeEEEEeecc--cccceEEEEEeecCCcEEEE--EcCCCcEEEEeCcchhhhccccchhhhhHhhccc
Q 041325 230 WDRTFKIWRTSDFRCLESVKNA--HDDAINAIVVSKSNDGFVYT--GSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS 305 (450)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 305 (450)
.+ .|.|||+++.+.++++... +...+.++..+..+ .+++. ....|.|.+||..+-+ .+..+..|++
T Consensus 105 ee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n-~ylAyp~s~t~GdV~l~d~~nl~--------~v~~I~aH~~ 174 (391)
T KOG2110|consen 105 EE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNAN-CYLAYPGSTTSGDVVLFDTINLQ--------PVNTINAHKG 174 (391)
T ss_pred cc-cEEEEecccceeehhhhccCCCccceEeeccCCCC-ceEEecCCCCCceEEEEEcccce--------eeeEEEecCC
Confidence 44 4999999999999998744 44456666665422 24443 3346899999986655 7788889999
Q ss_pred ceEEEEEcCCCCEEEEeeCCCc-EEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEE
Q 041325 306 AVTALALSTDGTVLYSGACDRS-ILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIR 382 (450)
Q Consensus 306 ~i~~l~~~~~~~~l~~g~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~ 382 (450)
.+.+++|+++|.+||++++.|+ |||+.+.+|+.+.++..+ .....|.+++|+++ +|++.+..++|.
T Consensus 175 ~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG-----------~~~~~IySL~Fs~ds~~L~~sS~TeTVH 243 (391)
T KOG2110|consen 175 PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRG-----------TYPVSIYSLSFSPDSQFLAASSNTETVH 243 (391)
T ss_pred ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCC-----------ceeeEEEEEEECCCCCeEEEecCCCeEE
Confidence 9999999999999999999986 799999999877432221 12456889999855 999999999999
Q ss_pred EeeCCCC
Q 041325 383 IWRRSSS 389 (450)
Q Consensus 383 iwd~~~~ 389 (450)
+|.+...
T Consensus 244 iFKL~~~ 250 (391)
T KOG2110|consen 244 IFKLEKV 250 (391)
T ss_pred EEEeccc
Confidence 9998764
No 191
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.78 E-value=1.6e-15 Score=141.37 Aligned_cols=286 Identities=32% Similarity=0.573 Sum_probs=205.2
Q ss_pred ceeeeEEeecCCCcceEEEEE--eCCEEEEeeC-CCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe
Q 041325 63 HQCSATLKVKGNSSYIPSLAI--AGKLLYGGSS-NGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK 139 (450)
Q Consensus 63 ~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 139 (450)
......+. +|...|.+++| ++.++++++. |+.+++|+......... +.+|...|.+++|+++.
T Consensus 145 ~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~v~~~~~~~~~ 210 (466)
T COG2319 145 GKLIRTLE--GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLST------------LAGHTDPVSSLAFSPDG 210 (466)
T ss_pred CeEEEEEe--cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEe------------eccCCCceEEEEEcCCc
Confidence 46666777 99999999999 6778888885 99999999988555444 55699999999999775
Q ss_pred --EEE-EeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEE
Q 041325 140 --LFS-AHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSAL 216 (450)
Q Consensus 140 --l~s-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 216 (450)
++. ++.|+.|++||...+.. +.. .+..|.... ..
T Consensus 211 ~~~~~~~~~d~~i~~wd~~~~~~----------------~~~--------------------------~~~~~~~~~-~~ 247 (466)
T COG2319 211 GLLIASGSSDGTIRLWDLSTGKL----------------LRS--------------------------TLSGHSDSV-VS 247 (466)
T ss_pred ceEEEEecCCCcEEEEECCCCcE----------------Eee--------------------------ecCCCCcce-eE
Confidence 444 48999999998774421 110 122465554 33
Q ss_pred EEccCCCEEEEEeCCCcEEEEecCCCeE-EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccch
Q 041325 217 ALSSDGSLLYSTSWDRTFKIWRTSDFRC-LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHS 295 (450)
Q Consensus 217 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 295 (450)
.|++++..+++++.|+.+++|+...... +..+ ..|...+.++.+.|... .+++++.|+.+.+||......
T Consensus 248 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~------- 318 (466)
T COG2319 248 SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-SGHSSSVLSVAFSPDGK-LLASGSSDGTVRLWDLETGKL------- 318 (466)
T ss_pred eECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-ecCCccEEEEEECCCCC-EEEEeeCCCcEEEEEcCCCce-------
Confidence 8999998899999999999999987664 4444 36789999999998444 666688889999998866541
Q ss_pred hhhh--HhhcccceEEEEEcCCCCEEEEe-eCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC-Ce
Q 041325 296 LVQT--LEKHKSAVTALALSTDGTVLYSG-ACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS-NL 371 (450)
Q Consensus 296 ~~~~--~~~~~~~i~~l~~~~~~~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 371 (450)
... ...|...+..+.|.+++..++.+ ..|+.+.+|+....... ....... .+..+.+.. ..
T Consensus 319 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-------------~~~~~~~-~~~~~~~~~~~~ 383 (466)
T COG2319 319 -LSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPL-------------KTLEGHS-NVLSVSFSPDGR 383 (466)
T ss_pred -EEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCcee-------------EEecCCc-eEEEEEECCCCC
Confidence 111 23566678999994332455555 67899999999876411 1111111 155555544 22
Q ss_pred EE-EEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 372 LF-SGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 372 l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+. .+..++.+.+|+.... ........+...+....+.+++. .+++++.++.+++|++.
T Consensus 384 ~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~ 442 (466)
T COG2319 384 VVSSGSTDGTVRLWDLSTG--------SLLRNLDGHTSRVTSLDFSPDGK-------------SLASGSSDNTIRLWDLK 442 (466)
T ss_pred EEEEecCCCceEEEecccC--------eeeeeccCCCCcEEEEEECCCCc-------------EEEEecCCCcEEEEecc
Confidence 33 4788999999999864 33333333327888899999988 89999999999999863
No 192
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=7.8e-18 Score=137.40 Aligned_cols=193 Identities=15% Similarity=0.230 Sum_probs=150.8
Q ss_pred CEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeec-CCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHh
Q 041325 223 SLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKS-NDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLE 301 (450)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 301 (450)
..++++...|.|++||..+++.+..++ .++..++.+.|... ....+.+++.||.|++||+|..... ....+.
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk-~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~------a~~~~~ 113 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFK-GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES------ARISWT 113 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheec-CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh------hheecc
Confidence 568888999999999999999999998 88899999999864 3446999999999999999876511 222233
Q ss_pred hcc-cceEEEEEcCCCCEEEEeeC----CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe---CCeEE
Q 041325 302 KHK-SAVTALALSTDGTVLYSGAC----DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV---SNLLF 373 (450)
Q Consensus 302 ~~~-~~i~~l~~~~~~~~l~~g~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~ 373 (450)
.+. .+..+++.+-+++.+++|.. +-.|.+||++..+.. +..-...|...|+++.|+ +++|+
T Consensus 114 ~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~-----------l~~~~eSH~DDVT~lrFHP~~pnlLl 182 (376)
T KOG1188|consen 114 QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQL-----------LRQLNESHNDDVTQLRFHPSDPNLLL 182 (376)
T ss_pred CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccch-----------hhhhhhhccCcceeEEecCCCCCeEE
Confidence 333 46677777667888888864 667999999976542 334557899999999998 45999
Q ss_pred EEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 374 SGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 374 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+||.||.|.+||++... + -..+...-.|...|..+.|..++-. .+.+-+.+++..+|+++
T Consensus 183 SGSvDGLvnlfD~~~d~----E-eDaL~~viN~~sSI~~igw~~~~yk------------rI~clTH~Etf~~~ele 242 (376)
T KOG1188|consen 183 SGSVDGLVNLFDTKKDN----E-EDALLHVINHGSSIHLIGWLSKKYK------------RIMCLTHMETFAIYELE 242 (376)
T ss_pred eecccceEEeeecCCCc----c-hhhHHHhhcccceeeeeeeecCCcc------------eEEEEEccCceeEEEcc
Confidence 99999999999998641 1 1223334457888999999988743 58888899999999974
No 193
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.78 E-value=9.5e-18 Score=144.88 Aligned_cols=266 Identities=17% Similarity=0.159 Sum_probs=178.1
Q ss_pred CCCcceEEEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe----CCeEEEEeCCC
Q 041325 73 GNSSYIPSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL----GDKLFSAHQDH 147 (450)
Q Consensus 73 ~h~~~v~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~~~dg 147 (450)
-|..-|.|+.| ...-++..++|..+.+|+-.+..............+ -..|. ....-. .+.++.++.||
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~p---t~~h~---~~rs~~~g~~~d~~~i~s~DG 85 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVP---TDMHL---GGRSSGGGKGSDTLLICSNDG 85 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCC---ccccc---cccccCCCCCcceEEEEcCCc
Confidence 46667788888 444455555566666665433322222111111000 00110 001111 23388899999
Q ss_pred eEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEE
Q 041325 148 KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYS 227 (450)
Q Consensus 148 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 227 (450)
.+.+.+-... .......|.+.+.+-.|+|+|.-|++
T Consensus 86 kf~il~k~~r--------------------------------------------VE~sv~AH~~A~~~gRW~~dGtgLlt 121 (737)
T KOG1524|consen 86 RFVILNKSAR--------------------------------------------VERSISAHAAAISSGRWSPDGAGLLT 121 (737)
T ss_pred eEEEecccch--------------------------------------------hhhhhhhhhhhhhhcccCCCCceeee
Confidence 9888764432 11223469999999999999999999
Q ss_pred EeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccce
Q 041325 228 TSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAV 307 (450)
Q Consensus 228 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i 307 (450)
++.||.|++|.-. |-....+- ....+|.|++|.|+.+..+++.+. .+.+=-+.... .+-.++.|.+-|
T Consensus 122 ~GEDG~iKiWSrs-GMLRStl~-Q~~~~v~c~~W~p~S~~vl~c~g~--h~~IKpL~~n~--------k~i~WkAHDGii 189 (737)
T KOG1524|consen 122 AGEDGVIKIWSRS-GMLRSTVV-QNEESIRCARWAPNSNSIVFCQGG--HISIKPLAANS--------KIIRWRAHDGLV 189 (737)
T ss_pred ecCCceEEEEecc-chHHHHHh-hcCceeEEEEECCCCCceEEecCC--eEEEeeccccc--------ceeEEeccCcEE
Confidence 9999999999854 43333333 467899999999988777776654 44444332222 345567899999
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCC
Q 041325 308 TALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 308 ~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~ 387 (450)
.++.|++..+++++|++|-..+|||.... .......|..+|++++|+++.++..+.-+++|+=
T Consensus 190 L~~~W~~~s~lI~sgGED~kfKvWD~~G~--------------~Lf~S~~~ey~ITSva~npd~~~~v~S~nt~R~~--- 252 (737)
T KOG1524|consen 190 LSLSWSTQSNIIASGGEDFRFKIWDAQGA--------------NLFTSAAEEYAITSVAFNPEKDYLLWSYNTARFS--- 252 (737)
T ss_pred EEeecCccccceeecCCceeEEeecccCc--------------ccccCChhccceeeeeeccccceeeeeeeeeeec---
Confidence 99999999999999999999999997643 2246678999999999998844433333344411
Q ss_pred CCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEE
Q 041325 388 SSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKI 446 (450)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~i 446 (450)
+...+.|..++|++||. .++.|...|.+.+
T Consensus 253 ----------------~p~~GSifnlsWS~DGT-------------Q~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 253 ----------------SPRVGSIFNLSWSADGT-------------QATCGTSTGQLIV 282 (737)
T ss_pred ----------------CCCccceEEEEEcCCCc-------------eeeccccCceEEE
Confidence 23457899999999999 8999988887653
No 194
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.78 E-value=3.4e-17 Score=152.33 Aligned_cols=277 Identities=19% Similarity=0.257 Sum_probs=182.6
Q ss_pred ccccCCCCCccceeeeEEeecCC-CcceEEEEE----eCCEEEEeeCCCcEEEecCC-CC--CceeeeecCCCCcceeEE
Q 041325 52 SFRKQAPAASEHQCSATLKVKGN-SSYIPSLAI----AGKLLYGGSSNGEIRAWNRD-PN--NYVNITSTDVGDHANVVA 123 (450)
Q Consensus 52 ~~~~~~~~~~~~~~~~~l~~~~h-~~~v~~~~~----d~~~l~tgs~dg~v~vw~~~-~~--~~~~~~~~~~~~~~~~~~ 123 (450)
..+...+....++++..|....- ...|+.+.+ |..++++|+.||.||||+-. +. +.........- ... .
T Consensus 1085 r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~L--s~~-~ 1161 (1387)
T KOG1517|consen 1085 RERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSL--SDQ-L 1161 (1387)
T ss_pred cceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccc--ccc-C
Confidence 44556677777777777763222 247999999 67899999999999999632 21 11111111100 000 0
Q ss_pred ecCCCceEEEEEe--CCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeec
Q 041325 124 TGNGDAVKSLVVL--GDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRH 201 (450)
Q Consensus 124 ~~h~~~v~~l~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (450)
.+..+.=.-+.|. ...|+++|.-..|+|||...+ .....++.
T Consensus 1162 ~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E----------------~~~~diP~-------------------- 1205 (1387)
T KOG1517|consen 1162 PGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKE----------------QVVADIPY-------------------- 1205 (1387)
T ss_pred ccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccc----------------eeEeeccc--------------------
Confidence 1111111334554 233777777899999999988 34444432
Q ss_pred ceeeeecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCe---EEEEeecccccc--eEEEEEeecCCcEEEEEcCC
Q 041325 202 KKCTWVHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSDFR---CLESVKNAHDDA--INAIVVSKSNDGFVYTGSAD 275 (450)
Q Consensus 202 ~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~~d 275 (450)
+....|+++.-+. .|+.+++|..||.|++||.+... .+...+ .|... |..+.+.+.+-+.+++|+.|
T Consensus 1206 ------~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R-~h~~~~~Iv~~slq~~G~~elvSgs~~ 1278 (1387)
T KOG1517|consen 1206 ------GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYR-EHNDVEPIVHLSLQRQGLGELVSGSQD 1278 (1387)
T ss_pred ------CCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeec-ccCCcccceeEEeecCCCcceeeeccC
Confidence 2333566666544 57999999999999999987543 334444 67666 99999997666679999999
Q ss_pred CcEEEEeCcchhhhccccchhhhhHhhc---ccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeee
Q 041325 276 TKIKVWKKLRAALQVNKKHSLVQTLEKH---KSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLK 352 (450)
Q Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~~~~~~---~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 352 (450)
|.|++||++.... . .......| .+..+++..+++...+|+|+. +.|+||++...+ +..+....
T Consensus 1279 G~I~~~DlR~~~~---e---~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~-l~~~k~n~------ 1344 (1387)
T KOG1517|consen 1279 GDIQLLDLRMSSK---E---TFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQ-LNIIKYNP------ 1344 (1387)
T ss_pred CeEEEEecccCcc---c---ccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecChhh-hcccccCc------
Confidence 9999999987420 1 11111111 235899999999999999998 999999987433 21111111
Q ss_pred ccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCC
Q 041325 353 GALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 353 ~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~ 388 (450)
..+....+.+.|++|++. ++++|+.|.+|.||....
T Consensus 1345 ~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k 1382 (1387)
T KOG1517|consen 1345 GFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEK 1382 (1387)
T ss_pred ccccCcCCCcceeeecchhHhhhhccCCceEEEeecCC
Confidence 112223355699999976 889999999999998764
No 195
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.77 E-value=2.4e-18 Score=145.90 Aligned_cols=257 Identities=15% Similarity=0.211 Sum_probs=195.9
Q ss_pred ceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEEE
Q 041325 77 YIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVWK 153 (450)
Q Consensus 77 ~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~ 153 (450)
.-..+.+ +|++|+.|+..|.|-.+|..++++..... -...|.++.|.-+. +++......+.|||
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-------------v~Etv~Dv~~LHneq~~AVAQK~y~yvYD 197 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-------------VMETVRDVTFLHNEQFFAVAQKKYVYVYD 197 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeee-------------hhhhhhhhhhhcchHHHHhhhhceEEEec
Confidence 3455666 79999999999999999999998766522 23478888887444 77777889999999
Q ss_pred cCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCc
Q 041325 154 IDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRT 233 (450)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 233 (450)
-..-+. .|+. ....|..+.|-|.--+|++++..|.
T Consensus 198 ~~GtEl--------------HClk-------------------------------~~~~v~rLeFLPyHfLL~~~~~~G~ 232 (545)
T KOG1272|consen 198 NNGTEL--------------HCLK-------------------------------RHIRVARLEFLPYHFLLVAASEAGF 232 (545)
T ss_pred CCCcEE--------------eehh-------------------------------hcCchhhhcccchhheeeecccCCc
Confidence 765432 2222 2236888999998889999999999
Q ss_pred EEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEc
Q 041325 234 FKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALS 313 (450)
Q Consensus 234 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 313 (450)
++--|+.+|+.+..+. ...+.+..+.-+| .+..+-+|..+|+|.+|.....+ ++..+..|.++|.++++.
T Consensus 233 L~Y~DVS~GklVa~~~-t~~G~~~vm~qNP-~NaVih~GhsnGtVSlWSP~ske--------PLvKiLcH~g~V~siAv~ 302 (545)
T KOG1272|consen 233 LKYQDVSTGKLVASIR-TGAGRTDVMKQNP-YNAVIHLGHSNGTVSLWSPNSKE--------PLVKILCHRGPVSSIAVD 302 (545)
T ss_pred eEEEeechhhhhHHHH-ccCCccchhhcCC-ccceEEEcCCCceEEecCCCCcc--------hHHHHHhcCCCcceEEEC
Confidence 9999999999999988 5678888899998 45589999999999999986665 777888899999999999
Q ss_pred CCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCCCcccc
Q 041325 314 TDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDH 393 (450)
Q Consensus 314 ~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 393 (450)
++|+|+++.+.|..++|||++.-..+ ..... ..+...++++..-+++++....|.||.=......
T Consensus 303 ~~G~YMaTtG~Dr~~kIWDlR~~~ql-------------~t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s~- 367 (545)
T KOG1272|consen 303 RGGRYMATTGLDRKVKIWDLRNFYQL-------------HTYRT-PHPASNLSLSQKGLLALSYGDHVQIWKDALKGSG- 367 (545)
T ss_pred CCCcEEeecccccceeEeeecccccc-------------ceeec-CCCccccccccccceeeecCCeeeeehhhhcCCC-
Confidence 99999999999999999999975533 11111 3455678888776666777778999953321110
Q ss_pred CCCceeEEEecCC--CcceEEEEEEecCC
Q 041325 394 QKGYSCLAVLEGH--RRPVKCLTAVVDSD 420 (450)
Q Consensus 394 ~~~~~~~~~~~~h--~~~v~~l~~~~~~~ 420 (450)
.....+..| .++|..+.|+|-..
T Consensus 368 ----~~~~pYm~H~~~~~V~~l~FcP~ED 392 (545)
T KOG1272|consen 368 ----HGETPYMNHRCGGPVEDLRFCPYED 392 (545)
T ss_pred ----CCCcchhhhccCcccccceeccHHH
Confidence 111111122 34899999998766
No 196
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.77 E-value=3.4e-19 Score=161.36 Aligned_cols=235 Identities=19% Similarity=0.345 Sum_probs=184.9
Q ss_pred EecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEee
Q 041325 123 ATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRR 200 (450)
Q Consensus 123 ~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (450)
+.+|..+|.|..|...+ +++|+.|..++||..++. .++..++
T Consensus 186 LlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~----------------~~lAs~r-------------------- 229 (1113)
T KOG0644|consen 186 LLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA----------------RCLASCR-------------------- 229 (1113)
T ss_pred HHhhhhheeeeeeccccceEeecCccceeeeeeccch----------------hhhccCC--------------------
Confidence 56899999999998544 999999999999998888 5555544
Q ss_pred cceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEE
Q 041325 201 HKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKV 280 (450)
Q Consensus 201 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v 280 (450)
+|.+.|+.++.+.+..++++++.|..|++|.+.++.++..+. +|.+.|++++|+|.. +.+.||++++
T Consensus 230 -------Ghs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLr-ghtgavtaiafsP~~-----sss~dgt~~~ 296 (1113)
T KOG0644|consen 230 -------GHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLR-GHTGAVTAIAFSPRA-----SSSDDGTCRI 296 (1113)
T ss_pred -------CCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHh-ccccceeeeccCccc-----cCCCCCceEe
Confidence 799999999999999999999999999999999999999998 999999999999743 7789999999
Q ss_pred EeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCcc
Q 041325 281 WKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK 360 (450)
Q Consensus 281 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (450)
||.+-.... ....+. .+ ....-+.++.|..++.-+++|+.|+.-..|.+... ..+..
T Consensus 297 wd~r~~~~~--y~prp~-~~-~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l-------------------~~~~~ 353 (1113)
T KOG0644|consen 297 WDARLEPRI--YVPRPL-KF-TEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL-------------------AWRSN 353 (1113)
T ss_pred ccccccccc--cCCCCC-Cc-ccccceeeeeccccccccccccCCcccccchhhHh-------------------hhhcc
Confidence 998721100 000011 11 12356778888889999999999999999887632 11222
Q ss_pred ceEEEEEe---CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEE
Q 041325 361 AILCLAVV---SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYS 437 (450)
Q Consensus 361 ~v~~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s 437 (450)
.+.-+... ..+.+++-.+-.+++|++.++ ..+..+.+|...+..+.++|-... ...+
T Consensus 354 ~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g--------~l~H~l~ghsd~~yvLd~Hpfn~r------------i~ms 413 (1113)
T KOG0644|consen 354 LLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG--------QLLHNLMGHSDEVYVLDVHPFNPR------------IAMS 413 (1113)
T ss_pred ceEEEeccccccccceeeeeeeEeeeeecccc--------hhhhhhcccccceeeeeecCCCcH------------hhhh
Confidence 22112222 236677778888999999875 667778899999999999998774 7889
Q ss_pred cccCCcEEEEEe
Q 041325 438 GSLDCEIKIWQI 449 (450)
Q Consensus 438 ~~~Dg~i~iw~l 449 (450)
++.||...|||+
T Consensus 414 ag~dgst~iwdi 425 (1113)
T KOG0644|consen 414 AGYDGSTIIWDI 425 (1113)
T ss_pred ccCCCceEeeec
Confidence 999999999997
No 197
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.77 E-value=2e-15 Score=134.64 Aligned_cols=277 Identities=11% Similarity=0.168 Sum_probs=167.3
Q ss_pred EEEeeCCCcEEEecCCC-CCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEE-eCCCeEEEEEcCCCceeEEe
Q 041325 88 LYGGSSNGEIRAWNRDP-NNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSA-HQDHKIRVWKIDNNTSAYYS 163 (450)
Q Consensus 88 l~tgs~dg~v~vw~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~-~~dg~i~iw~~~~~~~~~~~ 163 (450)
+++...++.|++|++.+ ++.... . ...+.+....++++|+. |+++ ..++.|.+|+++.....
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~-~----------~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l--- 70 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLL-Q----------VVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGAL--- 70 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeee-e----------EEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCce---
Confidence 34446789999999964 332211 1 11233567788898776 5554 45888999999732100
Q ss_pred ccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe-CCCcEEEEecCCC
Q 041325 164 TSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS-WDRTFKIWRTSDF 242 (450)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~ 242 (450)
...... ...+....++++|+++++++++ .++.|.+|++.+.
T Consensus 71 ----------~~~~~~----------------------------~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 71 ----------TFAAES----------------------------PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred ----------EEeeee----------------------------cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCC
Confidence 000000 1122456799999999888876 4889999999742
Q ss_pred -e---EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCE
Q 041325 243 -R---CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTV 318 (450)
Q Consensus 243 -~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 318 (450)
. .+..+. +......++++|+++.++++...++.|.+||+.+..... .......... .......++|+|+|++
T Consensus 113 g~~~~~~~~~~--~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~-~~~~~~~~~~-~g~~p~~~~~~pdg~~ 188 (330)
T PRK11028 113 GIPVAPIQIIE--GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLV-AQEPAEVTTV-EGAGPRHMVFHPNQQY 188 (330)
T ss_pred CCCCCceeecc--CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCccc-ccCCCceecC-CCCCCceEEECCCCCE
Confidence 2 222222 334567788998666556777778999999997532100 0000000111 1244678999999999
Q ss_pred EEEeeC-CCcEEEEEcCC--CceeeeCCCCCCceeeecccc------CCccceEEEEEeC--CeEEEEe-CCCeEEEeeC
Q 041325 319 LYSGAC-DRSILVWERDQ--GNYIVDGDDDSGHMVLKGALR------GHTKAILCLAVVS--NLLFSGS-SDNTIRIWRR 386 (450)
Q Consensus 319 l~~g~~-dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~------~~~~~v~~~~~~~--~~l~s~~-~dg~v~iwd~ 386 (450)
++++.. ++.|.+|++.. ++.. ....+. .+......+.+++ ++++++. .++.|.+|++
T Consensus 189 lyv~~~~~~~v~v~~~~~~~~~~~-----------~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 189 AYCVNELNSSVDVWQLKDPHGEIE-----------CVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV 257 (330)
T ss_pred EEEEecCCCEEEEEEEeCCCCCEE-----------EEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence 988876 89999999974 2211 011111 0112233566664 4777765 4789999998
Q ss_pred CCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcc-cCCcEEEEEe
Q 041325 387 SSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGS-LDCEIKIWQI 449 (450)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~-~Dg~i~iw~l 449 (450)
... ....+.+...... .....+.++|+++ +|+++. .+++|.+|++
T Consensus 258 ~~~----~~~~~~~~~~~~~-~~p~~~~~~~dg~-------------~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 258 SED----GSVLSFEGHQPTE-TQPRGFNIDHSGK-------------YLIAAGQKSHHISVYEI 303 (330)
T ss_pred eCC----CCeEEEeEEEecc-ccCCceEECCCCC-------------EEEEEEccCCcEEEEEE
Confidence 653 1112223322221 2455789999998 666655 5899999986
No 198
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.76 E-value=1.1e-15 Score=132.33 Aligned_cols=136 Identities=15% Similarity=0.229 Sum_probs=108.6
Q ss_pred CceEEEEEcc-CCCEEEEEeCCCcEEEEecCC--------------C--------------eEEEEeecccccceEEEEE
Q 041325 211 DTVSALALSS-DGSLLYSTSWDRTFKIWRTSD--------------F--------------RCLESVKNAHDDAINAIVV 261 (450)
Q Consensus 211 ~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~--------------~--------------~~~~~~~~~~~~~v~~~~~ 261 (450)
..|+|+.|-| +...++.+-.+|.+.+||.+- + .++..+. ...+.|+..+|
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~-~~~g~in~f~F 298 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVARWH-IGEGSINEFAF 298 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccceeE-eccccccceeE
Confidence 4688888887 445566667788888886531 1 1122222 23458899999
Q ss_pred eecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeee
Q 041325 262 SKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVD 341 (450)
Q Consensus 262 ~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~ 341 (450)
+| +..+|++.+.||.+||+|..+.+ ++..++..-+...|++|+|||++|++|++|--|.||.+...+.+
T Consensus 299 S~-DG~~LA~VSqDGfLRvF~fdt~e--------Llg~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVV-- 367 (636)
T KOG2394|consen 299 SP-DGKYLATVSQDGFLRIFDFDTQE--------LLGVMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVV-- 367 (636)
T ss_pred cC-CCceEEEEecCceEEEeeccHHH--------HHHHHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEE--
Confidence 99 45599999999999999997776 77777777789999999999999999999999999999988755
Q ss_pred CCCCCCceeeeccccCCccceEEEEEeC
Q 041325 342 GDDDSGHMVLKGALRGHTKAILCLAVVS 369 (450)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 369 (450)
..-.+|..+|..++|++
T Consensus 368 -----------ARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 368 -----------ARGQGHKSWVSVVAFDP 384 (636)
T ss_pred -----------EeccccccceeeEeecc
Confidence 56789999999999997
No 199
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=4.5e-17 Score=141.16 Aligned_cols=231 Identities=19% Similarity=0.294 Sum_probs=163.7
Q ss_pred eeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCc-EEEEEcCCCcEEEE
Q 041325 203 KCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDG-FVYTGSADTKIKVW 281 (450)
Q Consensus 203 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vw 281 (450)
...+.+|.+-|+|++|+.+|.+|++|+.|-.+.|||.-..+.+..+..+|...|.++.|.|..++ ++++|..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 34567999999999999999999999999999999999999999999999999999999986554 68999999999999
Q ss_pred eCcchhhhc--cccchhhhhHhhcccceEEEEEcCCC-CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC
Q 041325 282 KKLRAALQV--NKKHSLVQTLEKHKSAVTALALSTDG-TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358 (450)
Q Consensus 282 d~~~~~~~~--~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (450)
|+...+... .........+..|...|..++-.|++ +.+.++++||+|+-||++..... ............+...
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c---~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVC---NPDEDCPSILVNYNPQ 199 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccC---CccccccHHHHHhchh
Confidence 997532100 01223556677889999999999988 88999999999999999963211 0000000011111122
Q ss_pred ccceEEEEEe---CCeEEEEeCCCeEEEeeCCCCcccc----------CCCceeEEEe-cCCC-----------cceEEE
Q 041325 359 TKAILCLAVV---SNLLFSGSSDNTIRIWRRSSSVTDH----------QKGYSCLAVL-EGHR-----------RPVKCL 413 (450)
Q Consensus 359 ~~~v~~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~----------~~~~~~~~~~-~~h~-----------~~v~~l 413 (450)
--...|+..+ +.+|+.|+.|--.++||.+...... .+...++..+ .+|. ..++-+
T Consensus 200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~v 279 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYV 279 (758)
T ss_pred hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEE
Confidence 2344677776 4499999999999999954321110 1111223322 1222 135777
Q ss_pred EEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 414 TAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
.|+|+|.. +|++-+.+ .|+++|+
T Consensus 280 tfnpNGtE------------lLvs~~gE-hVYlfdv 302 (758)
T KOG1310|consen 280 TFNPNGTE------------LLVSWGGE-HVYLFDV 302 (758)
T ss_pred EECCCCcE------------EEEeeCCe-EEEEEee
Confidence 88999874 77777665 4888876
No 200
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.74 E-value=1.8e-16 Score=129.73 Aligned_cols=254 Identities=18% Similarity=0.304 Sum_probs=184.2
Q ss_pred ccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEec-CCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC
Q 041325 61 SEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWN-RDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG 137 (450)
Q Consensus 61 ~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 137 (450)
..+.+++.++ ||.+.|++... -..-+++.+.|.++|||- .+.++.-.. +...-..+++++.+..
T Consensus 12 ~kp~ll~~~e--G~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wps-----------I~~~mP~~~~~~~y~~ 78 (404)
T KOG1409|consen 12 KKPELLSKIE--GSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPS-----------IYHYMPSPCSAMEYVS 78 (404)
T ss_pred cchhhhhhhc--CchhhhhhheeccCCCCeEEccccceeeeEEeccccccCch-----------hhhhCCCCceEeeeec
Confidence 4556778888 99999998877 578899999999999994 444443222 1223346889999987
Q ss_pred Ce--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEE
Q 041325 138 DK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSA 215 (450)
Q Consensus 138 ~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 215 (450)
+. |+.|-..|++.-+.+...-. +......+..|...+..
T Consensus 79 e~~~L~vg~~ngtvtefs~sedfn---------------------------------------km~~~r~~~~h~~~v~~ 119 (404)
T KOG1409|consen 79 ESRRLYVGQDNGTVTEFALSEDFN---------------------------------------KMTFLKDYLAHQARVSA 119 (404)
T ss_pred cceEEEEEEecceEEEEEhhhhhh---------------------------------------hcchhhhhhhhhcceee
Confidence 66 88888899998887754311 00122234468899999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccch
Q 041325 216 LALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHS 295 (450)
Q Consensus 216 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 295 (450)
+.|+...+++++.+.|..+.---.+.+..+..+. ......++.+.- . +...|...|.|.+-.+... ...
T Consensus 120 ~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~--~~~~~t~~~~d~--~-~~fvGd~~gqvt~lr~~~~------~~~ 188 (404)
T KOG1409|consen 120 IVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN--FETPASALQFDA--L-YAFVGDHSGQITMLKLEQN------GCQ 188 (404)
T ss_pred EEecCCceeEEEeccccceEEEeeccCCcccceE--eeccCCCCceee--E-EEEecccccceEEEEEeec------CCc
Confidence 9999999999999999887655555555444332 112222222221 1 5566666777776665432 334
Q ss_pred hhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEE
Q 041325 296 LVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLF 373 (450)
Q Consensus 296 ~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~ 373 (450)
++..+.+|...+++++|.+..+.|++|..|..+.+||+.-.+.+ ...+.+|...|..+.+.. ..++
T Consensus 189 ~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~------------~~el~gh~~kV~~l~~~~~t~~l~ 256 (404)
T KOG1409|consen 189 LITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT------------AYELQGHNDKVQALSYAQHTRQLI 256 (404)
T ss_pred eEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce------------eeeeccchhhhhhhhhhhhheeee
Confidence 77788999999999999999999999999999999999865433 357788999998887764 4899
Q ss_pred EEeCCCeEEEeeCCCC
Q 041325 374 SGSSDNTIRIWRRSSS 389 (450)
Q Consensus 374 s~~~dg~v~iwd~~~~ 389 (450)
+++.||.|.+|+.+..
T Consensus 257 S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 257 SCGEDGGIVVWNMNVK 272 (404)
T ss_pred eccCCCeEEEEeccce
Confidence 9999999999998753
No 201
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.74 E-value=5.6e-16 Score=126.84 Aligned_cols=292 Identities=14% Similarity=0.218 Sum_probs=178.3
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCc-----eeeeecCCCCcceeEEecCCCceEEEEEeCCe----EE
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNY-----VNITSTDVGDHANVVATGNGDAVKSLVVLGDK----LF 141 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~-----~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~----l~ 141 (450)
...+-|.++.| +|.+||||..+|.|.++.-..... ....+...+.-..+....-...|..+.|.++. ++
T Consensus 23 teadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 23 TEADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred chhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 34567999999 699999999999999997543321 11111111110111111223578999998554 78
Q ss_pred EEeCCCeEEEEEcCCCceeEEe--ccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeee-ecCCCceEEEEE
Q 041325 142 SAHQDHKIRVWKIDNNTSAYYS--TSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTW-VHHVDTVSALAL 218 (450)
Q Consensus 142 s~~~dg~i~iw~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~ 218 (450)
..+.|.+|++|.+......... ...+........+. .-....-...+...+...+ ..|.--|+++.+
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr----------~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~ 172 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLR----------LPVEGRHDLEVEASPRRVYANAHTYHINSISV 172 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceee----------ceeeccccceeeeeeeeeccccceeEeeeeee
Confidence 8889999999999766432200 00000000000000 0000000111111111122 358889999999
Q ss_pred ccCCCEEEEEeCCCcEEEEecCCCeE---EEEeec----ccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhh--
Q 041325 219 SSDGSLLYSTSWDRTFKIWRTSDFRC---LESVKN----AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQ-- 289 (450)
Q Consensus 219 ~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-- 289 (450)
+.|+..++++. |=.|.+|+++--.. +..+++ ....-|++..|+|...++++-.+..|+|++-|++...+=
T Consensus 173 NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~ 251 (433)
T KOG1354|consen 173 NSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDA 251 (433)
T ss_pred cCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcc
Confidence 99999888875 88999999874322 122221 123568899999998989999999999999999853310
Q ss_pred ------ccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCC-ceeeeCCCCCCceeeeccccCC----
Q 041325 290 ------VNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQG-NYIVDGDDDSGHMVLKGALRGH---- 358 (450)
Q Consensus 290 ------~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~~~---- 358 (450)
.........-+..--+.|..+.|+++|+++++-+. -+|++||+... +++ ....-|
T Consensus 252 hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv-------------~t~~vh~~lr 317 (433)
T KOG1354|consen 252 HSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPV-------------ETYPVHEYLR 317 (433)
T ss_pred hhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcc-------------eEEeehHhHH
Confidence 01111222233344567899999999999997642 68999999543 222 111111
Q ss_pred --------ccce---EEEEEeCC--eEEEEeCCCeEEEeeCCCC
Q 041325 359 --------TKAI---LCLAVVSN--LLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 359 --------~~~v---~~~~~~~~--~l~s~~~dg~v~iwd~~~~ 389 (450)
...| .-++|+|+ +++||+..+..++++...+
T Consensus 318 ~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 318 SKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred HHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 1222 45778877 9999999999999996554
No 202
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1.1e-16 Score=134.52 Aligned_cols=199 Identities=20% Similarity=0.227 Sum_probs=148.0
Q ss_pred EEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeec
Q 041325 131 KSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVH 208 (450)
Q Consensus 131 ~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (450)
..++|++++ +++++.||++|+|++.+.. .......
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~-------------------------------------------t~l~e~~ 184 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSML-------------------------------------------TILEEIA 184 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcch-------------------------------------------hhhhhHh
Confidence 678888764 9999999999999987762 1222336
Q ss_pred CCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEee-cccccceEEEEEeecCC--c-E-EEEEcCCCcEEEEeC
Q 041325 209 HVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVK-NAHDDAINAIVVSKSND--G-F-VYTGSADTKIKVWKK 283 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~--~-~-l~~~~~dg~i~vwd~ 283 (450)
|...|.++.|+|||+.|++.+.| ..+||+.+++..+.... ...+.....+.|..++. . + ++....-+.|+.||+
T Consensus 185 ~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~ 263 (398)
T KOG0771|consen 185 HHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDI 263 (398)
T ss_pred hcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEe
Confidence 88899999999999999999999 99999999997777665 23334556667775331 2 2 333344567788776
Q ss_pred cchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceE
Q 041325 284 LRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAIL 363 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 363 (450)
..-... ..-...........|++++.++||++++.|+.||.|.|++..+.+.+. .....|...|+
T Consensus 264 ~~w~~~---~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~------------~vk~aH~~~VT 328 (398)
T KOG0771|consen 264 SLWSGS---NFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQ------------YVKEAHLGFVT 328 (398)
T ss_pred eeeccc---cccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeE------------eehhhheeeee
Confidence 443310 111222222344679999999999999999999999999999876552 45678999999
Q ss_pred EEEEeCC--eEEEEeCCCeEEEeeCCC
Q 041325 364 CLAVVSN--LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 364 ~~~~~~~--~l~s~~~dg~v~iwd~~~ 388 (450)
.+.|.|+ ++++.+.|.+..+..+.-
T Consensus 329 ~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 329 GLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eEEEcCCcCcccccccCCceeEEEEee
Confidence 9999976 888899999888887653
No 203
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=2.5e-16 Score=131.10 Aligned_cols=257 Identities=13% Similarity=0.102 Sum_probs=173.3
Q ss_pred EecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEee
Q 041325 123 ATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRR 200 (450)
Q Consensus 123 ~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (450)
+.+|.+.|++|.|+.+. |++|+.|..+++|+++..-..... +.+..
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~----------KPI~~---------------------- 99 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTP----------KPIGV---------------------- 99 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCC----------CCcee----------------------
Confidence 56899999999999655 999999999999999754110000 00000
Q ss_pred cceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeec-ccccceEEEEEeecCCcEEEEEcCCCcEE
Q 041325 201 HKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKN-AHDDAINAIVVSKSNDGFVYTGSADTKIK 279 (450)
Q Consensus 201 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 279 (450)
.-..|...|.|++|......+++|+.+++|.+.|+++.+.+..+.. ...+.|..+..+|. ++.+++.+.+|.|.
T Consensus 100 ----~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~ 174 (609)
T KOG4227|consen 100 ----MEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVS 174 (609)
T ss_pred ----ccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCC-CceEEEEecCceEE
Confidence 1114668999999999999999999999999999999988887752 12358999999996 66999999999999
Q ss_pred EEeCcchhhhccccchhhhhHhhcccceEEEEEcCC-CCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC
Q 041325 280 VWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTD-GTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358 (450)
Q Consensus 280 vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (450)
+||.+.... .. ..............+.|+|. -.+|++.+..+-+-+||.+.....+- +......+...
T Consensus 175 ~~D~Rd~~~----~~-~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~------~~~~~~~L~~~ 243 (609)
T KOG4227|consen 175 FIDNRDRQN----PI-SLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVY------QRSMFKGLPQE 243 (609)
T ss_pred EEeccCCCC----CC-ceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHH------hhhccccCccc
Confidence 999976541 11 11122234466788999995 46788888899999999986542110 00000011111
Q ss_pred ccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCC-------CcceEEEEEEecCCCCCCCCCCC
Q 041325 359 TKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGH-------RRPVKCLTAVVDSDYSNRNSDHS 429 (450)
Q Consensus 359 ~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~~~~~~~~~ 429 (450)
...-.+..|+ |+.+.+--....-.+||+.+. .-.+..+ .| ...+.+++|..+..
T Consensus 244 ~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~-------R~~V~k~-D~N~~GY~N~~T~KS~~F~~D~~--------- 306 (609)
T KOG4227|consen 244 NTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQ-------RCFVLKS-DHNPNGYCNIKTIKSMTFIDDYT--------- 306 (609)
T ss_pred chhhhheeeCCCCCeehhhhccCCCEEeeeecc-------cceeEec-cCCCCcceeeeeeeeeeeeccee---------
Confidence 1112445565 446665555555567777652 0111222 12 23567777776654
Q ss_pred CceEEEEEcccCCcEEEEEe
Q 041325 430 STSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 430 ~~~~~l~s~~~Dg~i~iw~l 449 (450)
++||+++-.|++|.|
T Consensus 307 -----v~tGSD~~~i~~Wkl 321 (609)
T KOG4227|consen 307 -----VATGSDHWGIHIWKL 321 (609)
T ss_pred -----eeccCcccceEEEec
Confidence 999999999999986
No 204
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.71 E-value=5.9e-15 Score=119.83 Aligned_cols=241 Identities=13% Similarity=0.121 Sum_probs=174.4
Q ss_pred CCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecce
Q 041325 126 NGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKK 203 (450)
Q Consensus 126 h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (450)
-..+|+|.+|+.|+ ++.+.....|.||.....+. ++ ..
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~-------------w~---------------------------~~ 48 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADL-------------WE---------------------------PA 48 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCC-------------ce---------------------------ec
Confidence 34699999999888 88888888999999887631 11 22
Q ss_pred eeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecC-CCe--EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEE
Q 041325 204 CTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTS-DFR--CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKV 280 (450)
Q Consensus 204 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v 280 (450)
.++..|...|++++|+|..+.|++++.|..-++|... .++ +...+. .++..++++.|+| ..+.|++|+.-..|.|
T Consensus 49 htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLl-RiNrAAt~V~WsP-~enkFAVgSgar~isV 126 (361)
T KOG1523|consen 49 HTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLL-RINRAATCVKWSP-KENKFAVGSGARLISV 126 (361)
T ss_pred eehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEE-EeccceeeEeecC-cCceEEeccCccEEEE
Confidence 2344799999999999999999999999999999984 332 333343 5788999999999 5558999999999999
Q ss_pred EeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCC--CCCC----ceeeecc
Q 041325 281 WKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGD--DDSG----HMVLKGA 354 (450)
Q Consensus 281 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~--~~~~----~~~~~~~ 354 (450)
|-++... .-+.....-+.+.+.|+++.|+|++-+|++|+.|+..+|+..--.. +-+-+ .+-+ .-.+..+
T Consensus 127 cy~E~EN----dWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~-Vdekpap~pWgsk~PFG~lm~E 201 (361)
T KOG1523|consen 127 CYYEQEN----DWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKG-VDEKPAPTPWGSKMPFGQLMSE 201 (361)
T ss_pred EEEeccc----ceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeec-cccCCCCCCCccCCcHHHHHHh
Confidence 9876543 3333444445578899999999999999999999999999753211 00000 0000 0112233
Q ss_pred ccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 355 LRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 355 ~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
.....+.|..+.|+ |+.|+-.+.|+.+.+=|...+. +.+.......-+..++.|-.+..
T Consensus 202 ~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~-------~~v~~~~~~~lP~ls~~~ise~~ 262 (361)
T KOG1523|consen 202 ASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS-------ERVQSVATAQLPLLSVSWISENS 262 (361)
T ss_pred hccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc-------hhccchhhccCCceeeEeecCCc
Confidence 44566889999998 7799999999999999877541 12333333336777888876655
No 205
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.71 E-value=4.5e-15 Score=140.57 Aligned_cols=262 Identities=14% Similarity=0.230 Sum_probs=165.8
Q ss_pred EecCCCceEEEEEeCCe---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEe
Q 041325 123 ATGNGDAVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVR 199 (450)
Q Consensus 123 ~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (450)
+..|...|..++.+++. +++|+.||+|++|+....... ....
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~---------~~s~-------------------------- 1088 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGE---------GGSA-------------------------- 1088 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcC---------ccee--------------------------
Confidence 56788899999988444 999999999999998765210 0000
Q ss_pred ecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCe-------EEEEeecccccceEEE-EEeecCCc-EEE
Q 041325 200 RHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFR-------CLESVKNAHDDAINAI-VVSKSNDG-FVY 270 (450)
Q Consensus 200 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-------~~~~~~~~~~~~v~~~-~~~~~~~~-~l~ 270 (450)
....++......+.++.+.+.++.+|.++.||.|++.+++... +.........+.+.++ ++...... .++
T Consensus 1089 -rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lv 1167 (1431)
T KOG1240|consen 1089 -RSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLV 1167 (1431)
T ss_pred -eeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEE
Confidence 1112222355688999999999999999999999999987621 1122221223334333 33332333 688
Q ss_pred EEcCCCcEEEEeCcchhhhccccchhhhhH--hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCc
Q 041325 271 TGSADTKIKVWKKLRAALQVNKKHSLVQTL--EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGH 348 (450)
Q Consensus 271 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~ 348 (450)
.+...+.|..||++... ....+ ....+.|++++.+|.++++++|+..|.+.+||++-+.++...
T Consensus 1168 y~T~~~~iv~~D~r~~~--------~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw------ 1233 (1431)
T KOG1240|consen 1168 YATDLSRIVSWDTRMRH--------DAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSW------ 1233 (1431)
T ss_pred EEEeccceEEecchhhh--------hHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecc------
Confidence 88899999999998765 22222 224478999999999999999999999999999987665321
Q ss_pred eeeeccccCCccceEEEEEe---C--CeEE-EEe-CCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEE-ec--
Q 041325 349 MVLKGALRGHTKAILCLAVV---S--NLLF-SGS-SDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAV-VD-- 418 (450)
Q Consensus 349 ~~~~~~~~~~~~~v~~~~~~---~--~~l~-s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~-- 418 (450)
. ..+..++..+..+ + ...+ +++ ..+.|.+|++.++. +-..+... ..+..+.+. |.
T Consensus 1234 -----~-~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~--------~~~vl~~s-~~~p~ls~~~Ps~~ 1298 (1431)
T KOG1240|consen 1234 -----E-HPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL--------RQTVLWAS-DGAPILSYALPSND 1298 (1431)
T ss_pred -----c-CcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc--------ceEEEEcC-CCCcchhhhccccc
Confidence 1 2233566655554 3 2444 444 57889999999862 22222111 011111110 10
Q ss_pred ----CCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 419 ----SDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 419 ----~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
.......+.....+.++.+|+.|+.|+.||.
T Consensus 1299 ~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~ 1333 (1431)
T KOG1240|consen 1299 ARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDP 1333 (1431)
T ss_pred CCCCCcccceeeecccCCceeeecCCccceeeccC
Confidence 0011112222223338999999999999985
No 206
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.70 E-value=5.8e-16 Score=130.26 Aligned_cols=196 Identities=22% Similarity=0.229 Sum_probs=144.7
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc
Q 041325 214 SALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 214 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 293 (450)
.+++|+.+|..+++|+.||++|+|+..+...+.... .|...|.++.|+|++. +|++-+.| ..+||+.+++.
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~-~~~~eV~DL~FS~dgk-~lasig~d-~~~VW~~~~g~------ 218 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEI-AHHAEVKDLDFSPDGK-FLASIGAD-SARVWSVNTGA------ 218 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhH-hhcCccccceeCCCCc-EEEEecCC-ceEEEEeccCc------
Confidence 789999999999999999999999988777776666 7899999999998544 89999998 89999998874
Q ss_pred chhhhhH--hhcccceEEEEEcCCC-----CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEE
Q 041325 294 HSLVQTL--EKHKSAVTALALSTDG-----TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLA 366 (450)
Q Consensus 294 ~~~~~~~--~~~~~~i~~l~~~~~~-----~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 366 (450)
.+... ...+.....+.|+.|+ .+++....-+.|+.||+...+. . ..............|++++
T Consensus 219 --~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~-------~-~~l~~~~~~~~~~siSsl~ 288 (398)
T KOG0771|consen 219 --ALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSG-------S-NFLRLRKKIKRFKSISSLA 288 (398)
T ss_pred --hhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecc-------c-cccchhhhhhccCcceeEE
Confidence 22222 2234456677888766 2333334456788877653321 0 1111222333345678888
Q ss_pred Ee--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEE-EecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCc
Q 041325 367 VV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLA-VLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCE 443 (450)
Q Consensus 367 ~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~ 443 (450)
.+ |++++.|+.||.|-|++..+- ++++ .-+.|..-|+.+.|+|+.+ ++++.+.|..
T Consensus 289 VS~dGkf~AlGT~dGsVai~~~~~l--------q~~~~vk~aH~~~VT~ltF~Pdsr-------------~~~svSs~~~ 347 (398)
T KOG0771|consen 289 VSDDGKFLALGTMDGSVAIYDAKSL--------QRLQYVKEAHLGFVTGLTFSPDSR-------------YLASVSSDNE 347 (398)
T ss_pred EcCCCcEEEEeccCCcEEEEEecee--------eeeEeehhhheeeeeeEEEcCCcC-------------cccccccCCc
Confidence 87 679999999999999998862 3333 3467999999999999999 7888888888
Q ss_pred EEEEEe
Q 041325 444 IKIWQI 449 (450)
Q Consensus 444 i~iw~l 449 (450)
+.|-.|
T Consensus 348 ~~v~~l 353 (398)
T KOG0771|consen 348 AAVTKL 353 (398)
T ss_pred eeEEEE
Confidence 777654
No 207
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.69 E-value=4.1e-15 Score=123.94 Aligned_cols=251 Identities=14% Similarity=0.182 Sum_probs=182.8
Q ss_pred CCCcceEEEEE--e--CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCe
Q 041325 73 GNSSYIPSLAI--A--GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHK 148 (450)
Q Consensus 73 ~h~~~v~~~~~--d--~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~ 148 (450)
.....|+.++| | .+.|...+.|..+.........+..... ..-......++|..++.....|++|-.+|.
T Consensus 53 ~~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~------~~~~~~l~~~~I~gl~~~dg~Litc~~sG~ 126 (412)
T KOG3881|consen 53 DELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLD------DAKTVSLGTKSIKGLKLADGTLITCVSSGN 126 (412)
T ss_pred chhhhhhhheeecCCceeEeeccccCcccccccccCCccccccc------cccccccccccccchhhcCCEEEEEecCCc
Confidence 45567888888 3 3455555577777777776665443310 011234566789999999888999999999
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEEEE
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLYS 227 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~ 227 (450)
+.+|..+.+... . .+...+. ....+..+.-++ +...+++
T Consensus 127 l~~~~~k~~d~h---------s------------------------------s~l~~la-~g~g~~~~r~~~~~p~Iva~ 166 (412)
T KOG3881|consen 127 LQVRHDKSGDLH---------S------------------------------SKLIKLA-TGPGLYDVRQTDTDPYIVAT 166 (412)
T ss_pred EEEEeccCCccc---------c------------------------------ccceeee-cCCceeeeccCCCCCceEec
Confidence 999999866310 0 0000111 112455555555 3445666
Q ss_pred EeCC--CcEEEEecCCCeEEEEeecc--------cccceEEEEEeecC-CcEEEEEcCCCcEEEEeCcchhhhccccchh
Q 041325 228 TSWD--RTFKIWRTSDFRCLESVKNA--------HDDAINAIVVSKSN-DGFVYTGSADTKIKVWKKLRAALQVNKKHSL 296 (450)
Q Consensus 228 ~~~d--g~i~iwd~~~~~~~~~~~~~--------~~~~v~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 296 (450)
|+.. ..+.+||+++.+.+..-+.. -.-.++++.|.+.. ...|++++.-+.+++||.+.+. .+
T Consensus 167 GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR-------RP 239 (412)
T KOG3881|consen 167 GGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR-------RP 239 (412)
T ss_pred CchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC-------cc
Confidence 9988 88999999988666544321 12346778888732 4469999999999999997544 36
Q ss_pred hhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEE
Q 041325 297 VQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFS 374 (450)
Q Consensus 297 ~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s 374 (450)
+..+.....+++++...|++++|++|..-|.+..||++.++.+ ...+.+-.+.|.++..++. ++++
T Consensus 240 V~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~------------g~~~kg~tGsirsih~hp~~~~las 307 (412)
T KOG3881|consen 240 VAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLL------------GCGLKGITGSIRSIHCHPTHPVLAS 307 (412)
T ss_pred eeEeccccCcceeeeecCCCcEEEEecccchhheecccCceee------------ccccCCccCCcceEEEcCCCceEEe
Confidence 6677777899999999999999999999999999999988754 2457888899999999976 9999
Q ss_pred EeCCCeEEEeeCCC
Q 041325 375 GSSDNTIRIWRRSS 388 (450)
Q Consensus 375 ~~~dg~v~iwd~~~ 388 (450)
++-|+.|||+|+++
T Consensus 308 ~GLDRyvRIhD~kt 321 (412)
T KOG3881|consen 308 CGLDRYVRIHDIKT 321 (412)
T ss_pred eccceeEEEeeccc
Confidence 99999999999997
No 208
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=2.5e-15 Score=138.15 Aligned_cols=235 Identities=16% Similarity=0.098 Sum_probs=154.0
Q ss_pred CCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCC---CeEEEEEcCCCceeEEeccCcc
Q 041325 94 NGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQD---HKIRVWKIDNNTSAYYSTSGKL 168 (450)
Q Consensus 94 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~ 168 (450)
+..|++||.+...... +..|...+.+.+|+|++ |+.++.+ ..|++||+.+++..
T Consensus 183 ~~~i~i~d~dg~~~~~-------------lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~-------- 241 (429)
T PRK01742 183 PYEVRVADYDGFNQFI-------------VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARK-------- 241 (429)
T ss_pred eEEEEEECCCCCCceE-------------eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceE--------
Confidence 4689999987665321 45677789999999887 6665543 46999999876321
Q ss_pred cccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe-CCCcEEEE--ecCCCeEE
Q 041325 169 KNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS-WDRTFKIW--RTSDFRCL 245 (450)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iw--d~~~~~~~ 245 (450)
.+.. ..+.....+|+|||+.|+.+. .+|.+.|| |+.+++.
T Consensus 242 ------~l~~------------------------------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~- 284 (429)
T PRK01742 242 ------VVAS------------------------------FRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP- 284 (429)
T ss_pred ------EEec------------------------------CCCccCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-
Confidence 1111 111233579999999888764 67876655 6665554
Q ss_pred EEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC
Q 041325 246 ESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD 325 (450)
Q Consensus 246 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d 325 (450)
..+. .+...+....|+|++..+++++..+|...+|++.... .. ...+ .+.. ....|+|||++|+..+.+
T Consensus 285 ~~lt-~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~----~~---~~~l-~~~~--~~~~~SpDG~~ia~~~~~ 353 (429)
T PRK01742 285 SQLT-SGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG----GG---ASLV-GGRG--YSAQISADGKTLVMINGD 353 (429)
T ss_pred Eeec-cCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC----CC---eEEe-cCCC--CCccCCCCCCEEEEEcCC
Confidence 3444 4566788899999766566666678889999875432 10 1111 2222 457899999999888776
Q ss_pred CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEe
Q 041325 326 RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVL 403 (450)
Q Consensus 326 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~ 403 (450)
+ +.+||+.+++... . ...+. .....|+ +++|+.++.++.+.+|++... .......+
T Consensus 354 ~-i~~~Dl~~g~~~~----------l---t~~~~--~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~------~G~~~~~l 411 (429)
T PRK01742 354 N-VVKQDLTSGSTEV----------L---SSTFL--DESPSISPNGIMIIYSSTQGLGKVLQLVSA------DGRFKARL 411 (429)
T ss_pred C-EEEEECCCCCeEE----------e---cCCCC--CCCceECCCCCEEEEEEcCCCceEEEEEEC------CCCceEEc
Confidence 5 6669998875331 0 01111 1234455 558999988998888876421 12566777
Q ss_pred cCCCcceEEEEEEecC
Q 041325 404 EGHRRPVKCLTAVVDS 419 (450)
Q Consensus 404 ~~h~~~v~~l~~~~~~ 419 (450)
..|.+.+...+|+|-.
T Consensus 412 ~~~~g~~~~p~wsp~~ 427 (429)
T PRK01742 412 PGSDGQVKFPAWSPYL 427 (429)
T ss_pred cCCCCCCCCcccCCCC
Confidence 7888889999998853
No 209
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.68 E-value=8.6e-14 Score=115.04 Aligned_cols=259 Identities=14% Similarity=0.169 Sum_probs=160.7
Q ss_pred cceEEEEEeC--CEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---EEEEeCCCeEE
Q 041325 76 SYIPSLAIAG--KLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---LFSAHQDHKIR 150 (450)
Q Consensus 76 ~~v~~~~~d~--~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~ 150 (450)
..+.-++|+. .-+|++..|-.|++||-........ -..-...|++++|-|.. |+.|+..| |.
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~L------------ks~sQrnvtclawRPlsaselavgCr~g-Ic 165 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKL------------KSVSQRNVTCLAWRPLSASELAVGCRAG-IC 165 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCCCCCcee------------cchhhcceeEEEeccCCcceeeeeecce-eE
Confidence 3466677744 3467888999999999777443332 11234589999998766 77777754 99
Q ss_pred EEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe-
Q 041325 151 VWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS- 229 (450)
Q Consensus 151 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 229 (450)
+|......... ..+...... ........+| .+|++|.|++||..+++++
T Consensus 166 iW~~s~tln~~------------r~~~~~s~~-----------------~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~ 215 (445)
T KOG2139|consen 166 IWSDSRTLNAN------------RNIRMMSTH-----------------HLQVLQDPGH-NPVTSMQWNEDGTILVTASF 215 (445)
T ss_pred EEEcCcccccc------------ccccccccc-----------------chhheeCCCC-ceeeEEEEcCCCCEEeeccc
Confidence 99887542100 000000000 0011112234 6899999999999999987
Q ss_pred CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEE
Q 041325 230 WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTA 309 (450)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 309 (450)
.|..|.|||..++..+.... ...+.+.-+.|+|+++ +++++.-|+..++|+..... ...+.. -..+.|..
T Consensus 216 gsssi~iWdpdtg~~~pL~~-~glgg~slLkwSPdgd-~lfaAt~davfrlw~e~q~w-------t~erw~-lgsgrvqt 285 (445)
T KOG2139|consen 216 GSSSIMIWDPDTGQKIPLIP-KGLGGFSLLKWSPDGD-VLFAATCDAVFRLWQENQSW-------TKERWI-LGSGRVQT 285 (445)
T ss_pred CcceEEEEcCCCCCcccccc-cCCCceeeEEEcCCCC-EEEEecccceeeeehhcccc-------eeccee-ccCCceee
Confidence 56789999999988776664 4567889999999666 88888999999999653322 122222 23458999
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEEcCCCc--eeeeCCCCCCceeeecccc------C---CccceEEEEEe--CCeEEEEe
Q 041325 310 LALSTDGTVLYSGACDRSILVWERDQGN--YIVDGDDDSGHMVLKGALR------G---HTKAILCLAVV--SNLLFSGS 376 (450)
Q Consensus 310 l~~~~~~~~l~~g~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~~~------~---~~~~v~~~~~~--~~~l~s~~ 376 (450)
.+|+|+|++|+..+. |.-++|.+.... .............+...+. + -.+.+.+++|+ |++|++.-
T Consensus 286 acWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~f 364 (445)
T KOG2139|consen 286 ACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIF 364 (445)
T ss_pred eeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEE
Confidence 999999998766553 344455543211 1111111111111111111 1 13567889998 56888876
Q ss_pred CCCe--------EEEeeCCC
Q 041325 377 SDNT--------IRIWRRSS 388 (450)
Q Consensus 377 ~dg~--------v~iwd~~~ 388 (450)
..+. |.+||.+.
T Consensus 365 Kg~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 365 KGQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred cCCchhhhhhhhhhhhcccc
Confidence 6543 56677664
No 210
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.67 E-value=3.5e-14 Score=124.18 Aligned_cols=279 Identities=14% Similarity=0.189 Sum_probs=186.4
Q ss_pred cCCCcceEEEEE--eCCEE-EEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCC
Q 041325 72 KGNSSYIPSLAI--AGKLL-YGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQD 146 (450)
Q Consensus 72 ~~h~~~v~~~~~--d~~~l-~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d 146 (450)
.+|....+.|.. ||+|+ |||...-.|++||+....+..... -....|.-.-.+.|. ++--..|
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERh------------lDae~V~feiLsDD~SK~v~L~~D 115 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERH------------LDAEVVDFEILSDDYSKSVFLQND 115 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeec------------ccccceeEEEeccchhhheEeecC
Confidence 368888888888 88875 567788999999998765433311 111233333334444 4444556
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLY 226 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 226 (450)
.+|-+-.--.. ..-.. -...-.+++++.-..-|+
T Consensus 116 R~IefHak~G~----------------hy~~R------------------------------IP~~GRDm~y~~~scDly 149 (703)
T KOG2321|consen 116 RTIEFHAKYGR----------------HYRTR------------------------------IPKFGRDMKYHKPSCDLY 149 (703)
T ss_pred ceeeehhhcCe----------------eeeee------------------------------cCcCCccccccCCCccEE
Confidence 66554332211 00000 111234566665333355
Q ss_pred EEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcc--
Q 041325 227 STSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHK-- 304 (450)
Q Consensus 227 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-- 304 (450)
.++....|.=++++.|+.+..+. ...+.++++..++ ..++|++|+.+|.|-.||.+...... ..........|.
T Consensus 150 ~~gsg~evYRlNLEqGrfL~P~~-~~~~~lN~v~in~-~hgLla~Gt~~g~VEfwDpR~ksrv~--~l~~~~~v~s~pg~ 225 (703)
T KOG2321|consen 150 LVGSGSEVYRLNLEQGRFLNPFE-TDSGELNVVSINE-EHGLLACGTEDGVVEFWDPRDKSRVG--TLDAASSVNSHPGG 225 (703)
T ss_pred EeecCcceEEEEccccccccccc-cccccceeeeecC-ccceEEecccCceEEEecchhhhhhe--eeecccccCCCccc
Confidence 55556788889999999999887 5568999999998 45599999999999999998765210 111111112222
Q ss_pred ---cceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC----CeEEEEeC
Q 041325 305 ---SAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS----NLLFSGSS 377 (450)
Q Consensus 305 ---~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~l~s~~~ 377 (450)
..|+++.|+.+|-.+++|+.+|.+.|||+++.+++. ..-.+...+|..+.|.. +.+++. .
T Consensus 226 ~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~------------~kdh~~e~pi~~l~~~~~~~q~~v~S~-D 292 (703)
T KOG2321|consen 226 DAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLL------------VKDHGYELPIKKLDWQDTDQQNKVVSM-D 292 (703)
T ss_pred cccCcceEEEecCCceeEEeeccCCcEEEEEcccCCcee------------ecccCCccceeeecccccCCCceEEec-c
Confidence 349999999889999999999999999999887663 22334456788888853 244443 4
Q ss_pred CCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEE
Q 041325 378 DNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIW 447 (450)
Q Consensus 378 dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw 447 (450)
...++|||-.++ +....+. ....++.+++.|+.. ++++|-.++.+..|
T Consensus 293 k~~~kiWd~~~G--------k~~asiE-pt~~lND~C~~p~sG-------------m~f~Ane~~~m~~y 340 (703)
T KOG2321|consen 293 KRILKIWDECTG--------KPMASIE-PTSDLNDFCFVPGSG-------------MFFTANESSKMHTY 340 (703)
T ss_pred hHHhhhcccccC--------Cceeecc-ccCCcCceeeecCCc-------------eEEEecCCCcceeE
Confidence 567999998885 4444444 455699999999998 89999888776654
No 211
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.66 E-value=1.9e-13 Score=113.30 Aligned_cols=188 Identities=16% Similarity=0.217 Sum_probs=140.9
Q ss_pred eEEEEEccCCCEEEEEeCC--CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc
Q 041325 213 VSALALSSDGSLLYSTSWD--RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290 (450)
Q Consensus 213 v~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 290 (450)
|..+-|+ ..++|..+.+ ..+++++++....+..+. ....|.++.++ .+ .|+++-.+. |+|||+++.+
T Consensus 49 IvEmLFS--SSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~--fpt~IL~VrmN--r~-RLvV~Lee~-IyIydI~~Mk--- 117 (391)
T KOG2110|consen 49 IVEMLFS--SSLVAIVSIKQPRKLKVVHFKKKTTICEIF--FPTSILAVRMN--RK-RLVVCLEES-IYIYDIKDMK--- 117 (391)
T ss_pred EEEeecc--cceeEEEecCCCceEEEEEcccCceEEEEe--cCCceEEEEEc--cc-eEEEEEccc-EEEEecccce---
Confidence 4444455 3455555543 459999999888888876 67899999997 34 555555544 9999997766
Q ss_pred cccchhhhhHhh---cccceEEEEEcCCCCEEEEee--CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEE
Q 041325 291 NKKHSLVQTLEK---HKSAVTALALSTDGTVLYSGA--CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL 365 (450)
Q Consensus 291 ~~~~~~~~~~~~---~~~~i~~l~~~~~~~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 365 (450)
++.++.. +...+..+++++.+.+++--+ ..|.|.+||+.+-+.+ ..+..|.+++.++
T Consensus 118 -----lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v-------------~~I~aH~~~lAal 179 (391)
T KOG2110|consen 118 -----LLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPV-------------NTINAHKGPLAAL 179 (391)
T ss_pred -----eehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceee-------------eEEEecCCceeEE
Confidence 6666554 334466666666666887643 3689999999986644 6778999999999
Q ss_pred EEe--CCeEEEEeCCCe-EEEeeCCCCccccCCCceeEEEecCC--CcceEEEEEEecCCCCCCCCCCCCceEEEEEccc
Q 041325 366 AVV--SNLLFSGSSDNT-IRIWRRSSSVTDHQKGYSCLAVLEGH--RRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSL 440 (450)
Q Consensus 366 ~~~--~~~l~s~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~ 440 (450)
+|+ |.+|||+|..|+ |||+.+.++ +.+..+.-- -..|.+++|+++.+ +|++.|+
T Consensus 180 afs~~G~llATASeKGTVIRVf~v~~G--------~kl~eFRRG~~~~~IySL~Fs~ds~-------------~L~~sS~ 238 (391)
T KOG2110|consen 180 AFSPDGTLLATASEKGTVIRVFSVPEG--------QKLYEFRRGTYPVSIYSLSFSPDSQ-------------FLAASSN 238 (391)
T ss_pred EECCCCCEEEEeccCceEEEEEEcCCc--------cEeeeeeCCceeeEEEEEEECCCCC-------------eEEEecC
Confidence 998 559999999998 799999876 445555322 34688999999999 9999999
Q ss_pred CCcEEEEEeC
Q 041325 441 DCEIKIWQIR 450 (450)
Q Consensus 441 Dg~i~iw~l~ 450 (450)
.++|++++|+
T Consensus 239 TeTVHiFKL~ 248 (391)
T KOG2110|consen 239 TETVHIFKLE 248 (391)
T ss_pred CCeEEEEEec
Confidence 9999999874
No 212
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=1.2e-13 Score=126.88 Aligned_cols=330 Identities=16% Similarity=0.222 Sum_probs=206.3
Q ss_pred CCCcceEEEEE---eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-----EEEEe
Q 041325 73 GNSSYIPSLAI---AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-----LFSAH 144 (450)
Q Consensus 73 ~h~~~v~~~~~---d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-----l~s~~ 144 (450)
|-...+...+. |+++++.... ..|.|+...+++++.. +.+|..++..+.+.+.. +++++
T Consensus 13 gg~n~~~~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~~------------l~~~~a~l~s~~~~~~~~~~~~~~~~s 79 (792)
T KOG1963|consen 13 GGRNGNKSPAVFSNDAKFLFLCTG-NFVKVYSTATGECITS------------LEDHTAPLTSVIVLPSSENANYLIVCS 79 (792)
T ss_pred ccccceecccccccCCcEEEEeeC-CEEEEEecchHhhhhh------------cccccCccceeeecCCCccceEEEEEe
Confidence 44445555544 6777776654 7899999999998876 77999999999997433 78999
Q ss_pred CCCeEEEEEcCCCceeEEeccCcccccceeeeeecc--------CCCcceeEeeecCceEEEeecceeeee--------c
Q 041325 145 QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLP--------TLNDRFTKCFLANNYVQVRRHKKCTWV--------H 208 (450)
Q Consensus 145 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~ 208 (450)
.||.|++||...+....................... .........+..+...+..+....+.. +
T Consensus 80 l~G~I~vwd~~~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~ 159 (792)
T KOG1963|consen 80 LDGTIRVWDWSDGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKE 159 (792)
T ss_pred cCccEEEecCCCcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhh
Confidence 999999999998866544433322111111000000 000011111111111111111111111 2
Q ss_pred CCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeE---EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc
Q 041325 209 HVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRC---LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR 285 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 285 (450)
|.. -.++.+++.|.+.+..- +..+.+|+..+... .......|...+++.+++|. ..++++|..||.|.+|.--.
T Consensus 160 ~~~-~~~I~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn-~~~~Aa~d~dGrI~vw~d~~ 236 (792)
T KOG1963|consen 160 HQE-PKSIVDNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPN-ERYLAAGDSDGRILVWRDFG 236 (792)
T ss_pred hcC-CccEEEcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccc-cceEEEeccCCcEEEEeccc
Confidence 222 35677888887666554 56788898887441 11122356667899999994 45999999999999996432
Q ss_pred hhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEE
Q 041325 286 AALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL 365 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 365 (450)
.+ ........+.=|...|.+++|+++|.+|++|+..|.+.+|.+.+++. +-+..-.++|..+
T Consensus 237 ~~----~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~k--------------qfLPRLgs~I~~i 298 (792)
T KOG1963|consen 237 SS----DDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKK--------------QFLPRLGSPILHI 298 (792)
T ss_pred cc----cccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCc--------------ccccccCCeeEEE
Confidence 11 11123344555788999999999999999999999999999998752 2344456789999
Q ss_pred EEeCC--eEEEEeCCCeEEEeeCCCCcccc-CCCceeE--EEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEccc
Q 041325 366 AVVSN--LLFSGSSDNTIRIWRRSSSVTDH-QKGYSCL--AVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSL 440 (450)
Q Consensus 366 ~~~~~--~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~ 440 (450)
.++++ +.+....|+.|.+-...+-.... -.+.... ..-....+-.+.+++.|.-. .++-.+.
T Consensus 299 ~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~-------------~~vln~~ 365 (792)
T KOG1963|consen 299 VVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN-------------SLVLNGH 365 (792)
T ss_pred EEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC-------------ceeecCC
Confidence 99854 78888889999988764321100 0000000 00111234466777777544 5777778
Q ss_pred CCcEEEEEe
Q 041325 441 DCEIKIWQI 449 (450)
Q Consensus 441 Dg~i~iw~l 449 (450)
-|.|.+||+
T Consensus 366 ~g~vQ~ydl 374 (792)
T KOG1963|consen 366 PGHVQFYDL 374 (792)
T ss_pred CceEEEEec
Confidence 888888875
No 213
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.66 E-value=3.8e-15 Score=129.04 Aligned_cols=204 Identities=15% Similarity=0.199 Sum_probs=151.0
Q ss_pred CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEE
Q 041325 85 GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYY 162 (450)
Q Consensus 85 ~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~ 162 (450)
...|+.++.||.+.|-+-.. +.... ...|.+.|.+-.|++++ |+++++||.|++|.-...-
T Consensus 75 ~d~~~i~s~DGkf~il~k~~-rVE~s------------v~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGML---- 137 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSA-RVERS------------ISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGML---- 137 (737)
T ss_pred cceEEEEcCCceEEEecccc-hhhhh------------hhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchH----
Confidence 45677788899998887432 22222 56899999999999888 9999999999999865441
Q ss_pred eccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCC
Q 041325 163 STSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDF 242 (450)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 242 (450)
...+.....+|.|++|.|+.+-++-+. .+.+.|=-+...
T Consensus 138 ----------------------------------------RStl~Q~~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n 176 (737)
T KOG1524|consen 138 ----------------------------------------RSTVVQNEESIRCARWAPNSNSIVFCQ-GGHISIKPLAAN 176 (737)
T ss_pred ----------------------------------------HHHHhhcCceeEEEEECCCCCceEEec-CCeEEEeecccc
Confidence 011112455899999999876655443 456777677666
Q ss_pred eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEe
Q 041325 243 RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSG 322 (450)
Q Consensus 243 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g 322 (450)
..+...+ .|.+-|.++.|++.. +++++|+.|-..++||... ..+..-..|+.+|++++|+|+ +.++.+
T Consensus 177 ~k~i~Wk-AHDGiiL~~~W~~~s-~lI~sgGED~kfKvWD~~G---------~~Lf~S~~~ey~ITSva~npd-~~~~v~ 244 (737)
T KOG1524|consen 177 SKIIRWR-AHDGLVLSLSWSTQS-NIIASGGEDFRFKIWDAQG---------ANLFTSAAEEYAITSVAFNPE-KDYLLW 244 (737)
T ss_pred cceeEEe-ccCcEEEEeecCccc-cceeecCCceeEEeecccC---------cccccCChhccceeeeeeccc-cceeee
Confidence 6677777 899999999999954 4999999999999999532 256666779999999999999 666666
Q ss_pred eCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEE
Q 041325 323 ACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRI 383 (450)
Q Consensus 323 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~i 383 (450)
+. .++++ -....+.|..++|+.+ .++.|...|.+.+
T Consensus 245 S~-nt~R~------------------------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 245 SY-NTARF------------------------SSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ee-eeeee------------------------cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 53 23331 1223567889999844 8888888887654
No 214
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.65 E-value=1e-14 Score=136.13 Aligned_cols=197 Identities=19% Similarity=0.305 Sum_probs=155.3
Q ss_pred CCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEE---EeecCCcEEEEEcCCCcEEEEeCcch
Q 041325 210 VDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIV---VSKSNDGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 210 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~---~~~~~~~~l~~~~~dg~i~vwd~~~~ 286 (450)
.+.+....+..+...++.++.++.+.+||...+.....+.........+.. .++ ..-++++|+.-+.|.+|+....
T Consensus 87 s~wi~g~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~-~~~~i~~gsv~~~iivW~~~~d 165 (967)
T KOG0974|consen 87 SDWIFGAKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSA-EELYIASGSVFGEIIVWKPHED 165 (967)
T ss_pred cccccccchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccC-cEEEEEeccccccEEEEecccc
Confidence 344555555667778889999999999999988877777622222222222 222 2336899999999999998632
Q ss_pred hhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEE
Q 041325 287 ALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLA 366 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 366 (450)
. ....+.+|++.|.++.++.||+++++.++|..+++|++.+.+.. ....-+|+..|..+.
T Consensus 166 n--------~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~------------~~~~fgHsaRvw~~~ 225 (967)
T KOG0974|consen 166 N--------KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL------------GCTGFGHSARVWACC 225 (967)
T ss_pred C--------CcceecccCCceEEEEEccCCcEEEEEecCcceeeeeccccccc------------CcccccccceeEEEE
Confidence 2 11257899999999999999999999999999999999987644 135678999999999
Q ss_pred EeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCC-cceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEE
Q 041325 367 VVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHR-RPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIK 445 (450)
Q Consensus 367 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~ 445 (450)
+.++.+++++.|-+.++|+.+. ..+..+.+|. ..|..++..++.. .++|++.||.++
T Consensus 226 ~~~n~i~t~gedctcrvW~~~~---------~~l~~y~~h~g~~iw~~~~~~~~~-------------~~vT~g~Ds~lk 283 (967)
T KOG0974|consen 226 FLPNRIITVGEDCTCRVWGVNG---------TQLEVYDEHSGKGIWKIAVPIGVI-------------IKVTGGNDSTLK 283 (967)
T ss_pred eccceeEEeccceEEEEEeccc---------ceehhhhhhhhcceeEEEEcCCce-------------EEEeeccCcchh
Confidence 9999999999999999997763 4455777775 4689999988888 999999999999
Q ss_pred EEEe
Q 041325 446 IWQI 449 (450)
Q Consensus 446 iw~l 449 (450)
+|++
T Consensus 284 ~~~l 287 (967)
T KOG0974|consen 284 LWDL 287 (967)
T ss_pred hhhh
Confidence 9986
No 215
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.65 E-value=1.5e-15 Score=127.06 Aligned_cols=177 Identities=26% Similarity=0.396 Sum_probs=141.2
Q ss_pred cccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc-ccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEE
Q 041325 252 HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN-KKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILV 330 (450)
Q Consensus 252 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~v 330 (450)
...++.++.|.+...+.+++|+.|..|++|.+....-... ........+..|...|+.+.|+|+|++|++|+.+|.|.+
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l 91 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL 91 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence 4578999999986666899999999999999877652211 233456677889999999999999999999999999999
Q ss_pred EEcCCCceee---eCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecC
Q 041325 331 WERDQGNYIV---DGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG 405 (450)
Q Consensus 331 wd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 405 (450)
|-...-.... ........+.....+.+|...|..++|.++ ++++++.|+.+++||+..+ .....+.+
T Consensus 92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G--------~l~~~~~d 163 (434)
T KOG1009|consen 92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAG--------QLLAILDD 163 (434)
T ss_pred EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccc--------eeEeeccc
Confidence 9877422110 111123345566788899999999999855 9999999999999999986 78888999
Q ss_pred CCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 406 HRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 406 h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
|...|..++|.|-.+ ++++-+.|...+.+.+
T Consensus 164 h~~yvqgvawDpl~q-------------yv~s~s~dr~~~~~~~ 194 (434)
T KOG1009|consen 164 HEHYVQGVAWDPLNQ-------------YVASKSSDRHPEGFSA 194 (434)
T ss_pred cccccceeecchhhh-------------hhhhhccCcccceeee
Confidence 999999999999999 7888888875555443
No 216
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.64 E-value=3.5e-16 Score=133.00 Aligned_cols=191 Identities=15% Similarity=0.240 Sum_probs=156.7
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN 291 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 291 (450)
.-..+.++.+|.+|+.|+..|.|..+|..+++....+. -...|.++.|.. +..++ +......+++||-...
T Consensus 131 GPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~LH-neq~~-AVAQK~y~yvYD~~Gt----- 201 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFLH-NEQFF-AVAQKKYVYVYDNNGT----- 201 (545)
T ss_pred CCeeeeecCCccEEEecCCccceeeeecccceeeeeee--hhhhhhhhhhhc-chHHH-HhhhhceEEEecCCCc-----
Confidence 34678899999999999999999999999999988886 677899999985 33344 4456688999995332
Q ss_pred ccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--
Q 041325 292 KKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS-- 369 (450)
Q Consensus 292 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-- 369 (450)
.+..+..+ ..|..+.|-|.--+|++++..|.++.-|+.+|+.+ ..+....+.+..+.-+|
T Consensus 202 ----ElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklV-------------a~~~t~~G~~~vm~qNP~N 263 (545)
T KOG1272|consen 202 ----ELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLV-------------ASIRTGAGRTDVMKQNPYN 263 (545)
T ss_pred ----EEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhh-------------HHHHccCCccchhhcCCcc
Confidence 35555533 67889999999889999999999999999999866 44444455566666554
Q ss_pred CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 370 NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 370 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
-.+-+|...|+|.+|...+. +++..+..|.++|.+|++.++|. |++|+|.|..++||||
T Consensus 264 aVih~GhsnGtVSlWSP~sk--------ePLvKiLcH~g~V~siAv~~~G~-------------YMaTtG~Dr~~kIWDl 322 (545)
T KOG1272|consen 264 AVIHLGHSNGTVSLWSPNSK--------EPLVKILCHRGPVSSIAVDRGGR-------------YMATTGLDRKVKIWDL 322 (545)
T ss_pred ceEEEcCCCceEEecCCCCc--------chHHHHHhcCCCcceEEECCCCc-------------EEeecccccceeEeee
Confidence 37889999999999998874 67777888999999999999999 9999999999999999
Q ss_pred C
Q 041325 450 R 450 (450)
Q Consensus 450 ~ 450 (450)
|
T Consensus 323 R 323 (545)
T KOG1272|consen 323 R 323 (545)
T ss_pred c
Confidence 7
No 217
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.63 E-value=1.9e-12 Score=105.38 Aligned_cols=235 Identities=14% Similarity=0.264 Sum_probs=154.1
Q ss_pred eEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeE-EEEeCC------Ce
Q 041325 78 IPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKL-FSAHQD------HK 148 (450)
Q Consensus 78 v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l-~s~~~d------g~ 148 (450)
...++| |..-++.|.++| .+||+.+.-+...... +..-+-.+..+-|--+.| +.||.+ ..
T Consensus 8 ~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~----------~~~~G~~~veMLfR~N~laLVGGg~~pky~pNk 76 (346)
T KOG2111|consen 8 TLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQ----------FIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNK 76 (346)
T ss_pred eeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhc----------cccCchhhhhHhhhhceEEEecCCCCCCCCCce
Confidence 444888 566677776655 8999987633211111 111113444444555553 334333 46
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST 228 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 228 (450)
|.|||=... .++..+ ....+|.++.+.++ .+++.
T Consensus 77 viIWDD~k~----------------~~i~el----------------------------~f~~~I~~V~l~r~--riVvv 110 (346)
T KOG2111|consen 77 VIIWDDLKE----------------RCIIEL----------------------------SFNSEIKAVKLRRD--RIVVV 110 (346)
T ss_pred EEEEecccC----------------cEEEEE----------------------------EeccceeeEEEcCC--eEEEE
Confidence 999993333 222222 24558999998865 45555
Q ss_pred eCCCcEEEEecC-CCeEEEEeeccc-ccceEEEEEeecCCc-EE-EEEcCCCcEEEEeCcchhhhccccchhhhhHhhcc
Q 041325 229 SWDRTFKIWRTS-DFRCLESVKNAH-DDAINAIVVSKSNDG-FV-YTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHK 304 (450)
Q Consensus 229 ~~dg~i~iwd~~-~~~~~~~~~~~~-~~~v~~~~~~~~~~~-~l-~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 304 (450)
- .+.|.+|... +.+.++.+.... .....+++-. .+. +| +-|..-|.|.+-|+...+.. ....+.+|.
T Consensus 111 l-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~--~~k~~LafPg~k~GqvQi~dL~~~~~~------~p~~I~AH~ 181 (346)
T KOG2111|consen 111 L-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPT--SNKSLLAFPGFKTGQVQIVDLASTKPN------APSIINAHD 181 (346)
T ss_pred e-cCeEEEEEcCCChhheeeeecccCCCceEeecCC--CCceEEEcCCCccceEEEEEhhhcCcC------CceEEEccc
Confidence 4 6899999988 556666665222 3333333332 333 33 33566799999998765511 235667899
Q ss_pred cceEEEEEcCCCCEEEEeeCCCc-EEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeE
Q 041325 305 SAVTALALSTDGTVLYSGACDRS-ILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTI 381 (450)
Q Consensus 305 ~~i~~l~~~~~~~~l~~g~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v 381 (450)
+.|.|++.+-+|.++|+++..|+ |||||..+|+.+.++ .-......|.+++|+++ +|+++|..|+|
T Consensus 182 s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~-----------RRG~d~A~iy~iaFSp~~s~LavsSdKgTl 250 (346)
T KOG2111|consen 182 SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQEL-----------RRGVDRADIYCIAFSPNSSWLAVSSDKGTL 250 (346)
T ss_pred CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeee-----------ecCCchheEEEEEeCCCccEEEEEcCCCeE
Confidence 99999999999999999999997 899999999877432 22234567999999976 99999999999
Q ss_pred EEeeCCCC
Q 041325 382 RIWRRSSS 389 (450)
Q Consensus 382 ~iwd~~~~ 389 (450)
.||.++..
T Consensus 251 HiF~l~~~ 258 (346)
T KOG2111|consen 251 HIFSLRDT 258 (346)
T ss_pred EEEEeecC
Confidence 99998763
No 218
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=5e-14 Score=117.56 Aligned_cols=214 Identities=12% Similarity=0.219 Sum_probs=154.8
Q ss_pred CCCcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC---CeEEEEeCC--C
Q 041325 73 GNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG---DKLFSAHQD--H 147 (450)
Q Consensus 73 ~h~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~---~~l~s~~~d--g 147 (450)
..++.|..++.-...|++|-.+|.+.+|....+..... +.. .......+..+.-.+ ..+++||.. .
T Consensus 103 l~~~~I~gl~~~dg~Litc~~sG~l~~~~~k~~d~hss--------~l~-~la~g~g~~~~r~~~~~p~Iva~GGke~~n 173 (412)
T KOG3881|consen 103 LGTKSIKGLKLADGTLITCVSSGNLQVRHDKSGDLHSS--------KLI-KLATGPGLYDVRQTDTDPYIVATGGKENIN 173 (412)
T ss_pred cccccccchhhcCCEEEEEecCCcEEEEeccCCccccc--------cce-eeecCCceeeeccCCCCCceEecCchhccc
Confidence 66778888888667788888899999999885542110 000 112223444554443 337779998 8
Q ss_pred eEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC--CCEE
Q 041325 148 KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD--GSLL 225 (450)
Q Consensus 148 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l 225 (450)
.+.+||++..+..+...... ++.+.. .-.-.++++.|-+. ...|
T Consensus 174 ~lkiwdle~~~qiw~aKNvp---------------nD~L~L-------------------rVPvW~tdi~Fl~g~~~~~f 219 (412)
T KOG3881|consen 174 ELKIWDLEQSKQIWSAKNVP---------------NDRLGL-------------------RVPVWITDIRFLEGSPNYKF 219 (412)
T ss_pred ceeeeecccceeeeeccCCC---------------Cccccc-------------------eeeeeeccceecCCCCCceE
Confidence 89999999883322111100 000000 01115677888876 7889
Q ss_pred EEEeCCCcEEEEecCCC-eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhh-Hhhc
Q 041325 226 YSTSWDRTFKIWRTSDF-RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQT-LEKH 303 (450)
Q Consensus 226 ~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~ 303 (450)
++++.-+.+++||.+.+ +++..+. ....++.++...|. .+++++|...|.+..+|++.++ .... +.+.
T Consensus 220 at~T~~hqvR~YDt~~qRRPV~~fd-~~E~~is~~~l~p~-gn~Iy~gn~~g~l~~FD~r~~k--------l~g~~~kg~ 289 (412)
T KOG3881|consen 220 ATITRYHQVRLYDTRHQRRPVAQFD-FLENPISSTGLTPS-GNFIYTGNTKGQLAKFDLRGGK--------LLGCGLKGI 289 (412)
T ss_pred EEEecceeEEEecCcccCcceeEec-cccCcceeeeecCC-CcEEEEecccchhheecccCce--------eeccccCCc
Confidence 99999999999999865 4666666 56789999999984 5589999999999999998877 4444 7888
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCcee
Q 041325 304 KSAVTALALSTDGTVLYSGACDRSILVWERDQGNYI 339 (450)
Q Consensus 304 ~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~ 339 (450)
.+.|+++..+|..+++++++-|..|+|+|+.+.+.+
T Consensus 290 tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 290 TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred cCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 899999999999999999999999999999986544
No 219
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.62 E-value=3.3e-13 Score=109.74 Aligned_cols=174 Identities=19% Similarity=0.316 Sum_probs=126.6
Q ss_pred CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhc--ccceEE
Q 041325 232 RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKH--KSAVTA 309 (450)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~i~~ 309 (450)
+.|.|||-...+++.++. ...+|.++.+. .+ .+++.- .+.|.+|...+.- +.+..+... .....+
T Consensus 75 NkviIWDD~k~~~i~el~--f~~~I~~V~l~--r~-riVvvl-~~~I~VytF~~n~-------k~l~~~et~~NPkGlC~ 141 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS--FNSEIKAVKLR--RD-RIVVVL-ENKIYVYTFPDNP-------KLLHVIETRSNPKGLCS 141 (346)
T ss_pred ceEEEEecccCcEEEEEE--eccceeeEEEc--CC-eEEEEe-cCeEEEEEcCCCh-------hheeeeecccCCCceEe
Confidence 579999977788888886 78899999998 34 444443 5689999986322 133333322 223444
Q ss_pred EEEcCCCCEEEE-eeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCe-EEEee
Q 041325 310 LALSTDGTVLYS-GACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNT-IRIWR 385 (450)
Q Consensus 310 l~~~~~~~~l~~-g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~-v~iwd 385 (450)
++-+.+..+|+. |-.-|.|+|-|+...+.- ....+.+|...|.|++.+ |.++||+|..|+ |||||
T Consensus 142 ~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~-----------~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFd 210 (346)
T KOG2111|consen 142 LCPTSNKSLLAFPGFKTGQVQIVDLASTKPN-----------APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFD 210 (346)
T ss_pred ecCCCCceEEEcCCCccceEEEEEhhhcCcC-----------CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEE
Confidence 433334445555 445799999999865421 235678999999999998 669999999998 89999
Q ss_pred CCCCccccCCCceeEEEec--CCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 386 RSSSVTDHQKGYSCLAVLE--GHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
..++ ..+..+. .....|.+++|+|+.. +|+.+|+-|+|+|+.++
T Consensus 211 t~~g--------~~l~E~RRG~d~A~iy~iaFSp~~s-------------~LavsSdKgTlHiF~l~ 256 (346)
T KOG2111|consen 211 TEDG--------TLLQELRRGVDRADIYCIAFSPNSS-------------WLAVSSDKGTLHIFSLR 256 (346)
T ss_pred cCCC--------cEeeeeecCCchheEEEEEeCCCcc-------------EEEEEcCCCeEEEEEee
Confidence 9986 4444443 2345799999999999 99999999999999875
No 220
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.62 E-value=1.3e-14 Score=125.79 Aligned_cols=162 Identities=19% Similarity=0.244 Sum_probs=117.2
Q ss_pred CceEEEEEeCCe---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeeccee
Q 041325 128 DAVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKC 204 (450)
Q Consensus 128 ~~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (450)
..|+++.|.+.. ++.+-.+|.+.+||.+...... ..........+.+.+.... ....+.+..
T Consensus 220 tsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t------------~p~~~~~k~~~~f~i~t~k---sk~~rNPv~ 284 (636)
T KOG2394|consen 220 SSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGAT------------APSYQALKDGDQFAILTSK---SKKTRNPVA 284 (636)
T ss_pred cceEEEEEEeCCCceEEEEEecCceEEeeccccccCC------------CCcccccCCCCeeEEeeee---ccccCCccc
Confidence 689999998544 7788889999999874331100 0000000011111111000 011124445
Q ss_pred eeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCc
Q 041325 205 TWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKL 284 (450)
Q Consensus 205 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 284 (450)
.+.--.+.|+.++|+|||++||+.+.||.+||+|..+.+.+...+ .--+...|++|+|+++ +|++|+.|..|.||.+.
T Consensus 285 ~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mk-SYFGGLLCvcWSPDGK-yIvtGGEDDLVtVwSf~ 362 (636)
T KOG2394|consen 285 RWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMK-SYFGGLLCVCWSPDGK-YIVTGGEDDLVTVWSFE 362 (636)
T ss_pred eeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHH-hhccceEEEEEcCCcc-EEEecCCcceEEEEEec
Confidence 555566789999999999999999999999999999888777666 5567899999999555 99999999999999997
Q ss_pred chhhhccccchhhhhHhhcccceEEEEEcC
Q 041325 285 RAALQVNKKHSLVQTLEKHKSAVTALALST 314 (450)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 314 (450)
.++ .+..-++|+++|..++|.|
T Consensus 363 erR--------VVARGqGHkSWVs~VaFDp 384 (636)
T KOG2394|consen 363 ERR--------VVARGQGHKSWVSVVAFDP 384 (636)
T ss_pred cce--------EEEeccccccceeeEeecc
Confidence 666 7778889999999999987
No 221
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.61 E-value=1.1e-12 Score=117.14 Aligned_cols=208 Identities=11% Similarity=0.145 Sum_probs=127.4
Q ss_pred CceEEEEEccCCCEEEEEe-CCCcEEEEecCC-CeE--EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcch
Q 041325 211 DTVSALALSSDGSLLYSTS-WDRTFKIWRTSD-FRC--LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 286 (450)
+....++++|++++|++++ .++.|.+|++.. ++. +.... .......++++|+++.++++...++.|.+|++.+.
T Consensus 35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~--~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~ 112 (330)
T PRK11028 35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP--LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKD 112 (330)
T ss_pred CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec--CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCC
Confidence 4567789999999887765 588999999973 332 22222 33456789999866645555556899999998642
Q ss_pred hhhccccchhhhhHhhcccceEEEEEcCCCCEEEEee-CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEE
Q 041325 287 ALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA-CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL 365 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 365 (450)
.. .......+. +......++++|+++++++++ .++.|.+||+.+...+.... . ....... ......+
T Consensus 113 g~----~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~---~---~~~~~~~-g~~p~~~ 180 (330)
T PRK11028 113 GI----PVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE---P---AEVTTVE-GAGPRHM 180 (330)
T ss_pred CC----CCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC---C---CceecCC-CCCCceE
Confidence 20 001122222 224467789999999886555 56999999998632220000 0 0000111 1223456
Q ss_pred EEeCC--eEEEEeC-CCeEEEeeCCCCccccCCCceeEEEecCC------CcceEEEEEEecCCCCCCCCCCCCceEEEE
Q 041325 366 AVVSN--LLFSGSS-DNTIRIWRRSSSVTDHQKGYSCLAVLEGH------RRPVKCLTAVVDSDYSNRNSDHSSTSFLVY 436 (450)
Q Consensus 366 ~~~~~--~l~s~~~-dg~v~iwd~~~~~~~~~~~~~~~~~~~~h------~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~ 436 (450)
.|+++ +++++.. ++.|.+|+++.. ....+.+..+..+ ......+.++|+++ +++
T Consensus 181 ~~~pdg~~lyv~~~~~~~v~v~~~~~~----~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~-------------~ly 243 (330)
T PRK11028 181 VFHPNQQYAYCVNELNSSVDVWQLKDP----HGEIECVQTLDMMPADFSDTRWAADIHITPDGR-------------HLY 243 (330)
T ss_pred EECCCCCEEEEEecCCCEEEEEEEeCC----CCCEEEEEEEecCCCcCCCCccceeEEECCCCC-------------EEE
Confidence 77654 7766665 899999999742 1112333333221 12234688999998 777
Q ss_pred Ecc-cCCcEEEEEe
Q 041325 437 SGS-LDCEIKIWQI 449 (450)
Q Consensus 437 s~~-~Dg~i~iw~l 449 (450)
++. .++.|.+|++
T Consensus 244 v~~~~~~~I~v~~i 257 (330)
T PRK11028 244 ACDRTASLISVFSV 257 (330)
T ss_pred EecCCCCeEEEEEE
Confidence 764 5789999987
No 222
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.59 E-value=9.4e-14 Score=127.78 Aligned_cols=192 Identities=14% Similarity=0.075 Sum_probs=123.4
Q ss_pred cCCCceEEEEEccCCCEEEEEeCC---CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEE--e
Q 041325 208 HHVDTVSALALSSDGSLLYSTSWD---RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVW--K 282 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw--d 282 (450)
.|...+...+|+|+|+.|+.++.+ ..|.+||+.+++..... ...+....++|+|++..++++...+|.+.|| |
T Consensus 201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~--~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d 278 (429)
T PRK01742 201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA--SFRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMG 278 (429)
T ss_pred cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe--cCCCccCceeECCCCCEEEEEEecCCcEEEEEEE
Confidence 466689999999999999887643 36999999887543222 1223345789999666455555678876666 5
Q ss_pred CcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEee-CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccc
Q 041325 283 KLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA-CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA 361 (450)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (450)
+.++. ...+..+...+....|+|||+.|+..+ .+|...||++...... . ..+ .+..
T Consensus 279 ~~~~~---------~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~---------~---~~l-~~~~- 335 (429)
T PRK01742 279 ANGGT---------PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGG---------A---SLV-GGRG- 335 (429)
T ss_pred CCCCC---------eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---------e---EEe-cCCC-
Confidence 43332 223334556678899999999877655 5788888877532110 0 011 1222
Q ss_pred eEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcc
Q 041325 362 ILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGS 439 (450)
Q Consensus 362 v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~ 439 (450)
....|+ +++|+..+.++ +.+||+.++ ........+ ....+.|+|+++ +|+.++
T Consensus 336 -~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g--------~~~~lt~~~--~~~~~~~sPdG~-------------~i~~~s 390 (429)
T PRK01742 336 -YSAQISADGKTLVMINGDN-VVKQDLTSG--------STEVLSSTF--LDESPSISPNGI-------------MIIYSS 390 (429)
T ss_pred -CCccCCCCCCEEEEEcCCC-EEEEECCCC--------CeEEecCCC--CCCCceECCCCC-------------EEEEEE
Confidence 234455 55787777765 556998864 111111111 235678999999 899999
Q ss_pred cCCcEEEEEe
Q 041325 440 LDCEIKIWQI 449 (450)
Q Consensus 440 ~Dg~i~iw~l 449 (450)
.+|.+.+|++
T Consensus 391 ~~g~~~~l~~ 400 (429)
T PRK01742 391 TQGLGKVLQL 400 (429)
T ss_pred cCCCceEEEE
Confidence 9999888875
No 223
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.59 E-value=2e-12 Score=115.00 Aligned_cols=280 Identities=15% Similarity=0.159 Sum_probs=165.4
Q ss_pred CEE-EEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEE
Q 041325 86 KLL-YGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYY 162 (450)
Q Consensus 86 ~~l-~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~ 162 (450)
+++ ++-..+|.|.|.|..+.+.+.. +......-..+.|++|+ +++++.||.|.++|+.+.+.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~------------i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~--- 70 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVAR------------IPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV--- 70 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEE------------EE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE---
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEE------------EcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE---
Confidence 444 4556789999999999887776 33333333456788765 88888999999999999843
Q ss_pred eccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe-CCCcEEEEecCC
Q 041325 163 STSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS-WDRTFKIWRTSD 241 (450)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 241 (450)
+..++ -.....++++++||++++++. .++.+.++|.++
T Consensus 71 -------------v~~i~----------------------------~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~t 109 (369)
T PF02239_consen 71 -------------VATIK----------------------------VGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAET 109 (369)
T ss_dssp -------------EEEEE-----------------------------SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT
T ss_pred -------------EEEEe----------------------------cCCCcceEEEcCCCCEEEEEecCCCceeEecccc
Confidence 32322 122568899999999988775 689999999999
Q ss_pred CeEEEEeecc------cccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCC
Q 041325 242 FRCLESVKNA------HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTD 315 (450)
Q Consensus 242 ~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 315 (450)
.+.+..+... ....+..+..++....++++--..+.|.+.|....+. +...............|+|+
T Consensus 110 le~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~-------~~~~~i~~g~~~~D~~~dpd 182 (369)
T PF02239_consen 110 LEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN-------LKVTTIKVGRFPHDGGFDPD 182 (369)
T ss_dssp --EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC-------EEEEEEE--TTEEEEEE-TT
T ss_pred ccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc-------cceeeecccccccccccCcc
Confidence 9999888632 2346778877876665666666678888888755320 11111223345677899999
Q ss_pred CCEEEEe-eCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCc--cceEEEEEeCCeEEEEeCCCeEEEeeCCCCccc
Q 041325 316 GTVLYSG-ACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT--KAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTD 392 (450)
Q Consensus 316 ~~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 392 (450)
+++++++ ..+..|-++|..+++.....+...........-..|. ++++...-.+...++.-....+.+||...
T Consensus 183 gry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~---- 258 (369)
T PF02239_consen 183 GRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYA---- 258 (369)
T ss_dssp SSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTB----
T ss_pred cceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhc----
Confidence 9987665 4577899999998876643222111110000000111 22333322233333333344566777665
Q ss_pred cCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEc----ccCCcEEEEEeC
Q 041325 393 HQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSG----SLDCEIKIWQIR 450 (450)
Q Consensus 393 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~----~~Dg~i~iw~l~ 450 (450)
++.+..+.....+ .-+..+|+++ ++... ...++|.++|.+
T Consensus 259 ----wkvv~~I~~~G~g-lFi~thP~s~-------------~vwvd~~~~~~~~~v~viD~~ 302 (369)
T PF02239_consen 259 ----WKVVKTIPTQGGG-LFIKTHPDSR-------------YVWVDTFLNPDADTVQVIDKK 302 (369)
T ss_dssp ----TSEEEEEE-SSSS---EE--TT-S-------------EEEEE-TT-SSHT-EEEEECC
T ss_pred ----CeEEEEEECCCCc-ceeecCCCCc-------------cEEeeccCCCCCceEEEEECc
Confidence 6888888877776 7888899999 67766 566889999864
No 224
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=5.5e-14 Score=120.57 Aligned_cols=265 Identities=15% Similarity=0.171 Sum_probs=175.7
Q ss_pred EEecCCCceEEEEEeCC--eEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEe
Q 041325 122 VATGNGDAVKSLVVLGD--KLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVR 199 (450)
Q Consensus 122 ~~~~h~~~v~~l~~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (450)
.+.+|.+.|..+.|+.. .|++|+.|..|.+||+.........
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f------------------------------------ 180 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF------------------------------------ 180 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc------------------------------------
Confidence 36789999999999844 4999999999999999987432111
Q ss_pred ecceeeeecCCCceEEEEEcc--CCCEEEEEeCCCcEEEEecCCCeEE---EEeecccccceEEEEEeecCCcEEEEEcC
Q 041325 200 RHKKCTWVHHVDTVSALALSS--DGSLLYSTSWDRTFKIWRTSDFRCL---ESVKNAHDDAINAIVVSKSNDGFVYTGSA 274 (450)
Q Consensus 200 ~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 274 (450)
..+|...|....|-| +...+++++.||.+++=.+.....+ ..+. .|.++|.-++.-|.....|.+++.
T Consensus 181 ------~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~-~h~g~vhklav~p~sp~~f~S~ge 253 (559)
T KOG1334|consen 181 ------ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLA-PHEGPVHKLAVEPDSPKPFLSCGE 253 (559)
T ss_pred ------ccccccchhhhhccCCCCCcCceeccccCceeeeeeccccceecceecc-cccCccceeeecCCCCCccccccc
Confidence 125777787777877 3456899999999998776543322 2233 789999999999988888999999
Q ss_pred CCcEEEEeCcchhhhccccchhhhhHhhccc---ceEEEEEcCCC-CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCcee
Q 041325 275 DTKIKVWKKLRAALQVNKKHSLVQTLEKHKS---AVTALALSTDG-TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMV 350 (450)
Q Consensus 275 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~---~i~~l~~~~~~-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 350 (450)
|+.+.-+|++.+.- ..... .-..+.. ....++..|.. ..+++|+.|..+++||.+.-..-- .......+.
T Consensus 254 D~~v~~~Dlr~~~p----a~~~~-cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~-~n~~~~~f~ 327 (559)
T KOG1334|consen 254 DAVVFHIDLRQDVP----AEKFV-CREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEE-NNGVLDKFC 327 (559)
T ss_pred ccceeeeeeccCCc----cceee-eeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhcc-ccchhhhcC
Confidence 99999999987651 11111 2222333 56788888844 589999999999999987532110 000001111
Q ss_pred eeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCcc--ccC---CCceeEEEecCCCc--ceEEEEEE-ecCC
Q 041325 351 LKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVT--DHQ---KGYSCLAVLEGHRR--PVKCLTAV-VDSD 420 (450)
Q Consensus 351 ~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~--~~~---~~~~~~~~~~~h~~--~v~~l~~~-~~~~ 420 (450)
+..........|++++|+ +.-|.+.-.|-.|+++.-..+.. ... ......+.+++|.. .|..+-|- |...
T Consensus 328 p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE 407 (559)
T KOG1334|consen 328 PHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE 407 (559)
T ss_pred CccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccc
Confidence 111222334568999998 33445555666789985443211 000 00112223788864 46666553 3344
Q ss_pred CCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 421 YSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 421 ~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
|+++||+-|.|.||+
T Consensus 408 -------------yVvSGSDCGhIFiW~ 422 (559)
T KOG1334|consen 408 -------------YVVSGSDCGHIFIWD 422 (559)
T ss_pred -------------eEEecCccceEEEEe
Confidence 999999999999998
No 225
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=2.4e-12 Score=118.16 Aligned_cols=231 Identities=15% Similarity=0.078 Sum_probs=143.6
Q ss_pred cEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEe---CCCeEEEEEcCCCceeEEeccCcccc
Q 041325 96 EIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAH---QDHKIRVWKIDNNTSAYYSTSGKLKN 170 (450)
Q Consensus 96 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~---~dg~i~iw~~~~~~~~~~~~~~~~~~ 170 (450)
.|.+||.+...... +..+...+...+|+||+ |+..+ .+..|.+|++.+++..
T Consensus 180 ~l~~~d~dg~~~~~-------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~---------- 236 (429)
T PRK03629 180 ELRVSDYDGYNQFV-------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR---------- 236 (429)
T ss_pred eEEEEcCCCCCCEE-------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeE----------
Confidence 68888877655332 33456689999999887 55433 2457899998876321
Q ss_pred cceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE-eCCC--cEEEEecCCCeEEEE
Q 041325 171 KYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST-SWDR--TFKIWRTSDFRCLES 247 (450)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg--~i~iwd~~~~~~~~~ 247 (450)
.+. ...+.+...+|+|||+.|+.. +.+| .|.+||+.+++....
T Consensus 237 ----~l~------------------------------~~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~l 282 (429)
T PRK03629 237 ----QVA------------------------------SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV 282 (429)
T ss_pred ----Ecc------------------------------CCCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEc
Confidence 111 111234457899999988765 4444 588999988765443
Q ss_pred eecccccceEEEEEeecCCcEEEEEcCCCcEEEE--eCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC
Q 041325 248 VKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVW--KKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD 325 (450)
Q Consensus 248 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d 325 (450)
. .+...+....|+|+++.++++...++...+| |+..++ ...+...........|+|||++|+..+.+
T Consensus 283 t--~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~---------~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~ 351 (429)
T PRK03629 283 T--DGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA---------PQRITWEGSQNQDADVSSDGKFMVMVSSN 351 (429)
T ss_pred c--CCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC---------eEEeecCCCCccCEEECCCCCEEEEEEcc
Confidence 3 2345678899999766455555555555555 554432 11112223345678999999998876543
Q ss_pred ---CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCe---EEEeeCCCCccccCCCc
Q 041325 326 ---RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNT---IRIWRRSSSVTDHQKGY 397 (450)
Q Consensus 326 ---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~---v~iwd~~~~~~~~~~~~ 397 (450)
..|.+||+.+++.. ... ..+ ......|+ +.+|+.++.++. +.++++..
T Consensus 352 ~g~~~I~~~dl~~g~~~-----------~Lt--~~~--~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G--------- 407 (429)
T PRK03629 352 GGQQHIAKQDLATGGVQ-----------VLT--DTF--LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDG--------- 407 (429)
T ss_pred CCCceEEEEECCCCCeE-----------EeC--CCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCC---------
Confidence 35888998876532 111 111 11234454 557887777764 66777753
Q ss_pred eeEEEecCCCcceEEEEEEec
Q 041325 398 SCLAVLEGHRRPVKCLTAVVD 418 (450)
Q Consensus 398 ~~~~~~~~h~~~v~~l~~~~~ 418 (450)
.....+.+|.+.+...+|+|-
T Consensus 408 ~~~~~l~~~~~~~~~p~Wsp~ 428 (429)
T PRK03629 408 RFKARLPATDGQVKFPAWSPY 428 (429)
T ss_pred CCeEECccCCCCcCCcccCCC
Confidence 345566678888888888863
No 226
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.55 E-value=1.1e-12 Score=107.30 Aligned_cols=282 Identities=12% Similarity=0.145 Sum_probs=174.7
Q ss_pred CcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---EEEEeCCCeEEE
Q 041325 75 SSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---LFSAHQDHKIRV 151 (450)
Q Consensus 75 ~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~i 151 (450)
.++..+++.+|+++|+++.- .+.|-|.++-+..... -.-+.|.-+.|..+. |.....|+.|.+
T Consensus 10 ~~~~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf-------------~cldki~yieW~ads~~ilC~~yk~~~vqv 75 (447)
T KOG4497|consen 10 LNPFCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF-------------LCLDKIVYIEWKADSCHILCVAYKDPKVQV 75 (447)
T ss_pred cCCceeECCCCCeeeeeeee-EEEEeccchhhHHHHH-------------HHHHHhhheeeeccceeeeeeeeccceEEE
Confidence 34455666699999999875 7888888887755431 123577788888666 556677899999
Q ss_pred EEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCE-EEEEeC
Q 041325 152 WKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSL-LYSTSW 230 (450)
Q Consensus 152 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~ 230 (450)
|++...+- . +....-...+..+.|+|+|+. |.+...
T Consensus 76 wsl~Qpew----------------~---------------------------ckIdeg~agls~~~WSPdgrhiL~tseF 112 (447)
T KOG4497|consen 76 WSLVQPEW----------------Y---------------------------CKIDEGQAGLSSISWSPDGRHILLTSEF 112 (447)
T ss_pred EEeeccee----------------E---------------------------EEeccCCCcceeeeECCCcceEeeeecc
Confidence 99987621 1 112234557899999999954 556667
Q ss_pred CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC-----------------------------------
Q 041325 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD----------------------------------- 275 (450)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----------------------------------- 275 (450)
|-+|.+|.+.+.+....- ..+..+..++|+|++. +.+..+.-
T Consensus 113 ~lriTVWSL~t~~~~~~~--~pK~~~kg~~f~~dg~-f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPd 189 (447)
T KOG4497|consen 113 DLRITVWSLNTQKGYLLP--HPKTNVKGYAFHPDGQ-FCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPD 189 (447)
T ss_pred eeEEEEEEeccceeEEec--ccccCceeEEECCCCc-eeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCC
Confidence 999999999887654433 3445668888887544 43333321
Q ss_pred -CcEEEEeCcchhhhccccchhhhhHhh-cccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeee------------
Q 041325 276 -TKIKVWKKLRAALQVNKKHSLVQTLEK-HKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVD------------ 341 (450)
Q Consensus 276 -g~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~------------ 341 (450)
..+.+||--- ....+.- ..-.+..++|+|.+++|++|+.|+.++|.+--+-+.+.+
T Consensus 190 g~~laVwd~~L----------eykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~ 259 (447)
T KOG4497|consen 190 GNWLAVWDNVL----------EYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTL 259 (447)
T ss_pred CcEEEEecchh----------hheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchh
Confidence 2233443200 0010111 225688899999999999999999999866443222100
Q ss_pred -------------------CCCCC--------C--------------ceeeeccccCCccceEEEEEeCC--eEEEEeCC
Q 041325 342 -------------------GDDDS--------G--------------HMVLKGALRGHTKAILCLAVVSN--LLFSGSSD 378 (450)
Q Consensus 342 -------------------~~~~~--------~--------------~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~d 378 (450)
+.... . ...+..........+--++|+.+ +++|-...
T Consensus 260 ~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~ 339 (447)
T KOG4497|consen 260 HLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDK 339 (447)
T ss_pred hhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCC
Confidence 00000 0 00000111112234566788865 55544332
Q ss_pred --CeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 379 --NTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 379 --g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
+.+-+||++.. + +...-....+|....|.|... .|+.+.....+++|.
T Consensus 340 ~PnalW~Wdlq~l--------~-l~avLiQk~piraf~WdP~~p-------------rL~vctg~srLY~W~ 389 (447)
T KOG4497|consen 340 YPNALWLWDLQNL--------K-LHAVLIQKHPIRAFEWDPGRP-------------RLVVCTGKSRLYFWA 389 (447)
T ss_pred CCceEEEEechhh--------h-hhhhhhhccceeEEEeCCCCc-------------eEEEEcCCceEEEEc
Confidence 56899999862 2 223333567899999999988 666666666688885
No 227
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.53 E-value=6.6e-12 Score=101.19 Aligned_cols=273 Identities=16% Similarity=0.215 Sum_probs=176.7
Q ss_pred CCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe-----CC-eEEEEeCCCeEEEEEcCCCceeEEeccC
Q 041325 93 SNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL-----GD-KLFSAHQDHKIRVWKIDNNTSAYYSTSG 166 (450)
Q Consensus 93 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-----~~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~ 166 (450)
..|.+.++++...+..... . ........+..+.|. ++ .++-+..+|.|.++.......
T Consensus 44 R~Gkl~Lys~~d~~~~~l~--------~-~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~s------- 107 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSPLD--------T-LQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDES------- 107 (339)
T ss_pred eccceEEEeecccccCccc--------e-eeeecccccceeeeeeccCCccceeeeccccceEEEEeecccee-------
Confidence 3467888888776644310 0 112233567777775 22 167777888999988765522
Q ss_pred cccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEE
Q 041325 167 KLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLE 246 (450)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 246 (450)
...+..... .. -......++.|++.+..++++..+|.+.+-+........
T Consensus 108 ---------s~~L~~ls~-------------------~k--i~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~ 157 (339)
T KOG0280|consen 108 ---------SVHLRGLSS-------------------KK--ISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEK 157 (339)
T ss_pred ---------eeeecccch-------------------hh--hhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeee
Confidence 111110000 00 001135678899989899999999999976665544333
Q ss_pred --EeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcC-CCCEEEEee
Q 041325 247 --SVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST-DGTVLYSGA 323 (450)
Q Consensus 247 --~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~g~ 323 (450)
.++ .|.-.++...|+..+.+++.+|+.|+.+..||+|-.+ .-..+..+.|...|.+|.-+| .+.+|++|+
T Consensus 158 vq~wk-~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~------~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGs 230 (339)
T KOG0280|consen 158 VQTWK-VHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPK------TFIWHNSKVHTSGVVSIYSSPPKPTYIATGS 230 (339)
T ss_pred ccccc-ccceeeeeeecccCCCceEEecCCCceEEEEEecCCc------ceeeecceeeecceEEEecCCCCCceEEEec
Confidence 566 8999999999998888899999999999999997332 012233456888999998887 678999999
Q ss_pred CCCcEEEEEcCC-CceeeeCCCCCCceeeeccccCCccceEEEEEeCC---eEEEEeCCCeEEEeeCCCCccccCCCcee
Q 041325 324 CDRSILVWERDQ-GNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN---LLFSGSSDNTIRIWRRSSSVTDHQKGYSC 399 (450)
Q Consensus 324 ~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~~~dg~v~iwd~~~~~~~~~~~~~~ 399 (450)
.|-.|++||.++ +++++. ..-.+.|+.+.+.+. .++.+++-+..+|-+.+.+... -...
T Consensus 231 YDe~i~~~DtRnm~kPl~~--------------~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e---~~~~ 293 (339)
T KOG0280|consen 231 YDECIRVLDTRNMGKPLFK--------------AKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLE---FQIV 293 (339)
T ss_pred cccceeeeehhcccCcccc--------------CccccceEEEEecchhhhHHHHHHHhcCceEEEecccccc---hhee
Confidence 999999999994 444421 112277888888754 3344444444778777754221 1124
Q ss_pred EEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcc-cCCcEE-EEE
Q 041325 400 LAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGS-LDCEIK-IWQ 448 (450)
Q Consensus 400 ~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~-~Dg~i~-iw~ 448 (450)
+...+.|.+-+..-.|..... +|+|++ .|..++ +|-
T Consensus 294 ~~s~~~hdSl~YG~DWd~~~~-------------~lATCsFYDk~~~~~Wl 331 (339)
T KOG0280|consen 294 LPSDKIHDSLCYGGDWDSKDS-------------FLATCSFYDKKIRQLWL 331 (339)
T ss_pred eeccccccceeeccccccccc-------------eeeeeeccccceeeeee
Confidence 445566777666666643333 788876 577755 773
No 228
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.51 E-value=2.2e-11 Score=99.77 Aligned_cols=302 Identities=13% Similarity=0.161 Sum_probs=179.0
Q ss_pred CcceEEEEE--eCCE-EEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---EEEEeCCCe
Q 041325 75 SSYIPSLAI--AGKL-LYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---LFSAHQDHK 148 (450)
Q Consensus 75 ~~~v~~~~~--d~~~-l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~ 148 (450)
-+.|.-+.| |.-+ |.....|+.|.+|++...+.... .....+++.+++|+|++ |.+...|-.
T Consensus 48 ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ck------------Ideg~agls~~~WSPdgrhiL~tseF~lr 115 (447)
T KOG4497|consen 48 LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCK------------IDEGQAGLSSISWSPDGRHILLTSEFDLR 115 (447)
T ss_pred HHHhhheeeeccceeeeeeeeccceEEEEEeecceeEEE------------eccCCCcceeeeECCCcceEeeeecceeE
Confidence 345666777 5444 44567789999999876654333 33455789999999988 777778999
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCCC-cceeEeeec---CceEEEee----cceeeeecCCCceEEEEEcc
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLN-DRFTKCFLA---NNYVQVRR----HKKCTWVHHVDTVSALALSS 220 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~----~~~~~~~~~~~~v~~~~~~~ 220 (450)
|.+|.+.+.+.....-.. .++....... .++...... ..++++.. .....+.-.+-..+.+.|+|
T Consensus 116 iTVWSL~t~~~~~~~~pK-------~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsP 188 (447)
T KOG4497|consen 116 ITVWSLNTQKGYLLPHPK-------TNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSP 188 (447)
T ss_pred EEEEEeccceeEEecccc-------cCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECC
Confidence 999999987543222111 1111111111 111111111 11111110 11112222344567788999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhh------------
Q 041325 221 DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAAL------------ 288 (450)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~------------ 288 (450)
||+.+++ ||-.-.-.+..+ .-.-.+..++|+|. +.++++|+.|+.+|+.+--+-+.
T Consensus 189 dg~~laV---------wd~~Leykv~aY--e~~lG~k~v~wsP~-~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~d 256 (447)
T KOG4497|consen 189 DGNWLAV---------WDNVLEYKVYAY--ERGLGLKFVEWSPC-NQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHD 256 (447)
T ss_pred CCcEEEE---------ecchhhheeeee--eeccceeEEEeccc-cceEEeeccchhhhhhceeeeeehhhhccchhccC
Confidence 8877664 443211111122 23357888999985 44999999999998865321110
Q ss_pred ---h---------------------------ccccc----------------hhhhhHhhcccceEEEEEcCCCCEEEEe
Q 041325 289 ---Q---------------------------VNKKH----------------SLVQTLEKHKSAVTALALSTDGTVLYSG 322 (450)
Q Consensus 289 ---~---------------------------~~~~~----------------~~~~~~~~~~~~i~~l~~~~~~~~l~~g 322 (450)
. ..... ++...+....-.+.-++|++|..++++-
T Consensus 257 p~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTr 336 (447)
T KOG4497|consen 257 PTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATR 336 (447)
T ss_pred chhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeee
Confidence 0 00000 0000111122346678999999999886
Q ss_pred eC--CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCce
Q 041325 323 AC--DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYS 398 (450)
Q Consensus 323 ~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 398 (450)
.. -+.+-+||++..+. ...-....+|.++.|++. .|+.+.....+++|...- ..
T Consensus 337 nd~~PnalW~Wdlq~l~l--------------~avLiQk~piraf~WdP~~prL~vctg~srLY~W~psg--------~~ 394 (447)
T KOG4497|consen 337 NDKYPNALWLWDLQNLKL--------------HAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSG--------PR 394 (447)
T ss_pred cCCCCceEEEEechhhhh--------------hhhhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCC--------ce
Confidence 54 35799999986542 233345678999999965 666666667799998763 23
Q ss_pred eEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCc
Q 041325 399 CLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCE 443 (450)
Q Consensus 399 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~ 443 (450)
++... ...-.|..+.|..++. .++-.+.|..
T Consensus 395 ~V~vP-~~GF~i~~l~W~~~g~-------------~i~l~~kDaf 425 (447)
T KOG4497|consen 395 VVGVP-KKGFNIQKLQWLQPGE-------------FIVLCGKDAF 425 (447)
T ss_pred EEecC-CCCceeeeEEecCCCc-------------EEEEEcCCce
Confidence 33333 3446799999999998 7888877763
No 229
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=1.2e-11 Score=114.25 Aligned_cols=231 Identities=12% Similarity=0.038 Sum_probs=138.5
Q ss_pred CcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeC---CCeEEEEEcCCCceeEEeccCccc
Q 041325 95 GEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQ---DHKIRVWKIDNNTSAYYSTSGKLK 169 (450)
Q Consensus 95 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~---dg~i~iw~~~~~~~~~~~~~~~~~ 169 (450)
..|.+||........ +..+...+.+.+|+|++ |+..+. +..|.+||+.+++..
T Consensus 184 ~~l~i~D~~g~~~~~-------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~--------- 241 (433)
T PRK04922 184 YALQVADSDGYNPQT-------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE--------- 241 (433)
T ss_pred EEEEEECCCCCCceE-------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE---------
Confidence 358888886554322 34566789999999887 666553 346999999876321
Q ss_pred ccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEE-EEeCCC--cEEEEecCCCeEEE
Q 041325 170 NKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLY-STSWDR--TFKIWRTSDFRCLE 246 (450)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg--~i~iwd~~~~~~~~ 246 (450)
.+ ....+...+..|+|+|+.++ +.+.+| .|.+||+.+++...
T Consensus 242 -----~l------------------------------~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~ 286 (433)
T PRK04922 242 -----LV------------------------------ASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR 286 (433)
T ss_pred -----Ee------------------------------ccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE
Confidence 00 01222345678999998775 445555 59999998876543
Q ss_pred EeecccccceEEEEEeecCCcEEEEEcCCCc--EEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC
Q 041325 247 SVKNAHDDAINAIVVSKSNDGFVYTGSADTK--IKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC 324 (450)
Q Consensus 247 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~ 324 (450)
+. .+........|+|++..++++...+|. |.++|+.+++. ..+..........+|+|||++|+..+.
T Consensus 287 -lt-~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~---------~~lt~~g~~~~~~~~SpDG~~Ia~~~~ 355 (433)
T PRK04922 287 -LT-NHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA---------ERLTFQGNYNARASVSPDGKKIAMVHG 355 (433)
T ss_pred -Cc-cCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe---------EEeecCCCCccCEEECCCCCEEEEEEC
Confidence 33 344455678999866645555555665 55556544431 111112233456899999999987654
Q ss_pred CC---cEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCC---CeEEEeeCCCCccccCCC
Q 041325 325 DR---SILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSD---NTIRIWRRSSSVTDHQKG 396 (450)
Q Consensus 325 dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d---g~v~iwd~~~~~~~~~~~ 396 (450)
++ .|.+||+.+++.. .+. +........|+ +++++..+.+ +.|.+++...
T Consensus 356 ~~~~~~I~v~d~~~g~~~--------------~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g-------- 412 (433)
T PRK04922 356 SGGQYRIAVMDLSTGSVR--------------TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDG-------- 412 (433)
T ss_pred CCCceeEEEEECCCCCeE--------------ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC--------
Confidence 43 6999999876532 111 11112234565 4555554442 3577777753
Q ss_pred ceeEEEecCCCcceEEEEEEe
Q 041325 397 YSCLAVLEGHRRPVKCLTAVV 417 (450)
Q Consensus 397 ~~~~~~~~~h~~~v~~l~~~~ 417 (450)
.....+..+.+.+...+|+|
T Consensus 413 -~~~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 413 -RVRQRLVSADGEVREPAWSP 432 (433)
T ss_pred -CceEEcccCCCCCCCCccCC
Confidence 23344444556667777765
No 230
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.49 E-value=2.3e-12 Score=101.96 Aligned_cols=259 Identities=16% Similarity=0.278 Sum_probs=161.9
Q ss_pred ceEEEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCC--ceEEEEEeCCeEEEEeCCCeEEEEE
Q 041325 77 YIPSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGD--AVKSLVVLGDKLFSAHQDHKIRVWK 153 (450)
Q Consensus 77 ~v~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~~~~~l~s~~~dg~i~iw~ 153 (450)
.|+.+.+ +...|+++..++.+.....-.+.+....+......+...+..|.+ +...+....+.++++..||.+.+.+
T Consensus 38 ~~~~~~~v~~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 38 KLSKVSLSAEYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEEeechhhheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 3777777 778888888888887777665554444333333333333333332 3344444455699999999999999
Q ss_pred cCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe----
Q 041325 154 IDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS---- 229 (450)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---- 229 (450)
.+..... ...++ ..|.+. -+.++...++.+.++.
T Consensus 118 ~~~~~~~---------------~~~i~--------------------------~~~~~~-as~~~~~~~~~i~s~~~g~~ 155 (319)
T KOG4714|consen 118 TDKDLAL---------------MSRIP--------------------------SIHSGS-ASRKICRHGNSILSGGCGNW 155 (319)
T ss_pred chHHHhh---------------hhhcc--------------------------cccccc-cccceeecccEEecCCcceE
Confidence 8753110 00000 001111 1122223344444332
Q ss_pred -CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceE
Q 041325 230 -WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVT 308 (450)
Q Consensus 230 -~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 308 (450)
.-+..+.|+++..+.+..-. .....|.+++-+|...+++++|+.||.+-+||.+... .+...+..|+.+|+
T Consensus 156 n~~d~~~a~~~~p~~t~~~~~-~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~-------~p~S~l~ahk~~i~ 227 (319)
T KOG4714|consen 156 NAQDNFYANTLDPIKTLIPSK-KALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA-------MPVSLLKAHKAEIW 227 (319)
T ss_pred eeccceeeecccccccccccc-cccccchhhhCCcccccEEEEecCCCeEEEEEccccc-------chHHHHHHhhhhhh
Confidence 12345566665433322222 2334599999999888899999999999999998764 26778889999999
Q ss_pred EEEEcC-CCCEEEEeeCCCcEEEEEcCCCceeeeCCC-----------CCCceeeeccccCCccceEEEEEeCCeEEEEe
Q 041325 309 ALALST-DGTVLYSGACDRSILVWERDQGNYIVDGDD-----------DSGHMVLKGALRGHTKAILCLAVVSNLLFSGS 376 (450)
Q Consensus 309 ~l~~~~-~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~ 376 (450)
.+.|+| ++..|+++++||.+..||..+.-.-..... -.........+......|.++...+..|++|+
T Consensus 228 eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgt 307 (319)
T KOG4714|consen 228 EVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGT 307 (319)
T ss_pred heeccCCCchheeEecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEecc
Confidence 999999 778999999999999999875211111000 01111222233344456777777899999999
Q ss_pred CCCeEEEee
Q 041325 377 SDNTIRIWR 385 (450)
Q Consensus 377 ~dg~v~iwd 385 (450)
.-+.|++++
T Consensus 308 d~eaIyl~~ 316 (319)
T KOG4714|consen 308 DAEAIYLTR 316 (319)
T ss_pred ccceEEEec
Confidence 999998875
No 231
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.47 E-value=4.3e-12 Score=105.19 Aligned_cols=187 Identities=18% Similarity=0.272 Sum_probs=135.7
Q ss_pred CceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc
Q 041325 211 DTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 290 (450)
..+..++|++.-..++++..|-.|++||-.. ++...++......|.+++|-|.....|+.|+..| |.+|.....-...
T Consensus 99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~ 176 (445)
T KOG2139|consen 99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN 176 (445)
T ss_pred cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence 3578899999777789999999999999877 6666776667789999999998877888888865 8999764322100
Q ss_pred ------cccchhhhhHhhcccceEEEEEcCCCCEEEEeeC-CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceE
Q 041325 291 ------NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC-DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAIL 363 (450)
Q Consensus 291 ------~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 363 (450)
......+....+| ..|++|+|.+||..+++++- |..|.|||..++..+ +.. ...-+.++
T Consensus 177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~-----------pL~--~~glgg~s 242 (445)
T KOG2139|consen 177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKI-----------PLI--PKGLGGFS 242 (445)
T ss_pred cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcc-----------ccc--ccCCCcee
Confidence 0011112222334 68999999999999998875 678999999988654 111 22345677
Q ss_pred EEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCC
Q 041325 364 CLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDY 421 (450)
Q Consensus 364 ~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 421 (450)
-+.|++ ++|+++.-|+..++|+.... +....... -.+.|....|+|+|..
T Consensus 243 lLkwSPdgd~lfaAt~davfrlw~e~q~-------wt~erw~l-gsgrvqtacWspcGsf 294 (445)
T KOG2139|consen 243 LLKWSPDGDVLFAATCDAVFRLWQENQS-------WTKERWIL-GSGRVQTACWSPCGSF 294 (445)
T ss_pred eEEEcCCCCEEEEecccceeeeehhccc-------ceecceec-cCCceeeeeecCCCCE
Confidence 788875 59999999999999965432 23333333 3448999999999994
No 232
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=3.6e-11 Score=111.14 Aligned_cols=173 Identities=11% Similarity=0.031 Sum_probs=113.2
Q ss_pred cEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeC---CCeEEEEEcCCCceeEEeccCcccc
Q 041325 96 EIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQ---DHKIRVWKIDNNTSAYYSTSGKLKN 170 (450)
Q Consensus 96 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~---dg~i~iw~~~~~~~~~~~~~~~~~~ 170 (450)
.|.+||.+...... +..|...+...+|+||+ |+..+. +..|.+||+.+++..
T Consensus 183 ~l~~~d~dg~~~~~-------------lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~---------- 239 (435)
T PRK05137 183 RLAIMDQDGANVRY-------------LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE---------- 239 (435)
T ss_pred EEEEECCCCCCcEE-------------EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE----------
Confidence 67788876554322 45677899999999887 555543 468999999877321
Q ss_pred cceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEE-EEeCCCc--EEEEecCCCeEEEE
Q 041325 171 KYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLY-STSWDRT--FKIWRTSDFRCLES 247 (450)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~ 247 (450)
.+..+.+.+...+|+|||+.|+ +.+.++. |.+||+.+++.. .
T Consensus 240 ----------------------------------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~ 284 (435)
T PRK05137 240 ----------------------------------LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT-R 284 (435)
T ss_pred ----------------------------------EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE-E
Confidence 1112344567789999998775 4455555 777798877654 3
Q ss_pred eecccccceEEEEEeecCCcEEEEEcCCC--cEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC
Q 041325 248 VKNAHDDAINAIVVSKSNDGFVYTGSADT--KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD 325 (450)
Q Consensus 248 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d 325 (450)
+. .+........|+|++..++++...+| .|.++|+..++ ...+......+....|+|||+.|+....+
T Consensus 285 Lt-~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~---------~~~lt~~~~~~~~~~~SpdG~~ia~~~~~ 354 (435)
T PRK05137 285 LT-DSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN---------PRRISFGGGRYSTPVWSPRGDLIAFTKQG 354 (435)
T ss_pred cc-CCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC---------eEEeecCCCcccCeEECCCCCEEEEEEcC
Confidence 43 34555677899997664555544444 57777865543 11122223456678899999999887653
Q ss_pred ---CcEEEEEcCCC
Q 041325 326 ---RSILVWERDQG 336 (450)
Q Consensus 326 ---g~i~vwd~~~~ 336 (450)
..|.+||+..+
T Consensus 355 ~~~~~i~~~d~~~~ 368 (435)
T PRK05137 355 GGQFSIGVMKPDGS 368 (435)
T ss_pred CCceEEEEEECCCC
Confidence 36888887654
No 233
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.44 E-value=1.8e-10 Score=102.66 Aligned_cols=303 Identities=11% Similarity=0.091 Sum_probs=166.7
Q ss_pred CCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEE
Q 041325 57 APAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLV 134 (450)
Q Consensus 57 ~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 134 (450)
.-...+.+.+.++. .....-..+.| ||+++++++.||.|.++|+.+.+.+.... -.....+++
T Consensus 20 viD~~t~~~~~~i~--~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~-------------~G~~~~~i~ 84 (369)
T PF02239_consen 20 VIDGATNKVVARIP--TGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIK-------------VGGNPRGIA 84 (369)
T ss_dssp EEETTT-SEEEEEE---STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE--------------SSEEEEEE
T ss_pred EEECCCCeEEEEEc--CCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEe-------------cCCCcceEE
Confidence 34455677888887 44333333555 89999999999999999999999776622 223568899
Q ss_pred EeCCe--EE-EEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCC
Q 041325 135 VLGDK--LF-SAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVD 211 (450)
Q Consensus 135 ~~~~~--l~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (450)
+++|+ ++ +...++.+.++|.++.+. +..++.... .......
T Consensus 85 ~s~DG~~~~v~n~~~~~v~v~D~~tle~----------------v~~I~~~~~--------------------~~~~~~~ 128 (369)
T PF02239_consen 85 VSPDGKYVYVANYEPGTVSVIDAETLEP----------------VKTIPTGGM--------------------PVDGPES 128 (369)
T ss_dssp E--TTTEEEEEEEETTEEEEEETTT--E----------------EEEEE--EE---------------------TTTS--
T ss_pred EcCCCCEEEEEecCCCceeEeccccccc----------------eeecccccc--------------------cccccCC
Confidence 98776 44 445689999999998843 222221100 0001334
Q ss_pred ceEEEEEccCCCEEEEEeC-CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc
Q 041325 212 TVSALALSSDGSLLYSTSW-DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 290 (450)
.+..+..++....++..-. .+.|.+.|....+.+..-............|.|++..++++...++.|.++|..+++...
T Consensus 129 Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~ 208 (369)
T PF02239_consen 129 RVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVA 208 (369)
T ss_dssp -EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred CceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceeeecccccceeEEEeeccceEEE
Confidence 6778888888876665554 488888888766543322213455678889998666566777788899999987765211
Q ss_pred cccchhhhhHhhcccceEEEEEcC----------CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCcc
Q 041325 291 NKKHSLVQTLEKHKSAVTALALST----------DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK 360 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~----------~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (450)
. .-.--..|..+...+ .+| .+...++.-....+.+||..+.+.+ ..+.....
T Consensus 209 ~----i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv-------------~~I~~~G~ 270 (369)
T PF02239_consen 209 L----IDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVV-------------KTIPTQGG 270 (369)
T ss_dssp E----EE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEE-------------EEEE-SSS
T ss_pred E----eeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEE-------------EEEECCCC
Confidence 0 000001233333322 122 2222222222334556666665544 34444444
Q ss_pred ceEEEEEeCC--eEEEE----eCCCeEEEeeCCCCccccCCCceeEEEecCC-CcceEEEEEEecCCCCCCCCCCCCceE
Q 041325 361 AILCLAVVSN--LLFSG----SSDNTIRIWRRSSSVTDHQKGYSCLAVLEGH-RRPVKCLTAVVDSDYSNRNSDHSSTSF 433 (450)
Q Consensus 361 ~v~~~~~~~~--~l~s~----~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~~~~~~~~~~~~ 433 (450)
. .-+..+++ ++++. ...+.|.++|.++. +.+..+... ...+..+.|+++|++
T Consensus 271 g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl--------~~~~~i~~~~~~~~~h~ef~~dG~~------------ 329 (369)
T PF02239_consen 271 G-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL--------KVVKTITPGPGKRVVHMEFNPDGKE------------ 329 (369)
T ss_dssp S---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT--------EEEE-HHHHHT--EEEEEE-TTSSE------------
T ss_pred c-ceeecCCCCccEEeeccCCCCCceEEEEECcCc--------ceeEEEeccCCCcEeccEECCCCCE------------
Confidence 4 45555544 77766 45688999999873 455555322 235899999999993
Q ss_pred EEEEccc-CCcEEEEEe
Q 041325 434 LVYSGSL-DCEIKIWQI 449 (450)
Q Consensus 434 ~l~s~~~-Dg~i~iw~l 449 (450)
..+|.-. ++.|.+||-
T Consensus 330 v~vS~~~~~~~i~v~D~ 346 (369)
T PF02239_consen 330 VWVSVWDGNGAIVVYDA 346 (369)
T ss_dssp EEEEEE--TTEEEEEET
T ss_pred EEEEEecCCCEEEEEEC
Confidence 3344333 337999985
No 234
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=2.4e-11 Score=111.80 Aligned_cols=218 Identities=14% Similarity=0.065 Sum_probs=127.9
Q ss_pred ecCCCceEEEEEeCCe--EEEEeC---CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEE
Q 041325 124 TGNGDAVKSLVVLGDK--LFSAHQ---DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQV 198 (450)
Q Consensus 124 ~~h~~~v~~l~~~~~~--l~s~~~---dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (450)
..+...+.+.+|+|++ |+..+. ...|.+||+.+++...
T Consensus 192 ~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~------------------------------------- 234 (427)
T PRK02889 192 LSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV------------------------------------- 234 (427)
T ss_pred ccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-------------------------------------
Confidence 4566789999999887 655543 2459999998773211
Q ss_pred eecceeeeecCCCceEEEEEccCCCEEE-EEeCCCcEEEEe--cCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC
Q 041325 199 RRHKKCTWVHHVDTVSALALSSDGSLLY-STSWDRTFKIWR--TSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD 275 (450)
Q Consensus 199 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd--~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 275 (450)
+....+.+...+|+|||+.|+ +.+.+|...||. +..+. ...+. .+........|+|++..+++++..+
T Consensus 235 -------l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt-~~~~~~~~~~wSpDG~~l~f~s~~~ 305 (427)
T PRK02889 235 -------VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLT-QSSGIDTEPFFSPDGRSIYFTSDRG 305 (427)
T ss_pred -------eecCCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECC-CCCCCCcCeEEcCCCCEEEEEecCC
Confidence 011223456789999999876 456788766665 44443 44444 3444566788999766555565556
Q ss_pred CcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCC---cEEEEEcCCCceeeeCCCCCCceeee
Q 041325 276 TKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDR---SILVWERDQGNYIVDGDDDSGHMVLK 352 (450)
Q Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~ 352 (450)
|...+|.+.... .....+ .+ ........+|+|||++|+..+.++ .|.+||+.+++...
T Consensus 306 g~~~Iy~~~~~~----g~~~~l-t~--~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~------------ 366 (427)
T PRK02889 306 GAPQIYRMPASG----GAAQRV-TF--TGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTA------------ 366 (427)
T ss_pred CCcEEEEEECCC----CceEEE-ec--CCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEE------------
Confidence 777777653211 000011 11 122334678999999998877654 69999998765321
Q ss_pred ccccCCccceEEEEEeC--CeEEEEeC-CCe--EEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEec
Q 041325 353 GALRGHTKAILCLAVVS--NLLFSGSS-DNT--IRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVD 418 (450)
Q Consensus 353 ~~~~~~~~~v~~~~~~~--~~l~s~~~-dg~--v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 418 (450)
+... .......|++ +.|+..+. .|. +.+.+... .....+..+.+.+...+|+|-
T Consensus 367 --lt~~-~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g---------~~~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 367 --LTDT-TRDESPSFAPNGRYILYATQQGGRSVLAAVSSDG---------RIKQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred --ccCC-CCccCceECCCCCEEEEEEecCCCEEEEEEECCC---------CceEEeecCCCCCCCCccCCC
Confidence 1111 1123456664 45555544 333 44444432 233444456666777777764
No 235
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.43 E-value=6.2e-12 Score=102.21 Aligned_cols=261 Identities=14% Similarity=0.213 Sum_probs=151.8
Q ss_pred CCcceEEEEEe--CCEEEEeeCCCcEEEecCCCCC-cee----eeecCCCCcceeEEecCCCceEEEEEeCCe----EEE
Q 041325 74 NSSYIPSLAIA--GKLLYGGSSNGEIRAWNRDPNN-YVN----ITSTDVGDHANVVATGNGDAVKSLVVLGDK----LFS 142 (450)
Q Consensus 74 h~~~v~~~~~d--~~~l~tgs~dg~v~vw~~~~~~-~~~----~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~----l~s 142 (450)
....|+++.|| |.||++|...|.|.++..+... +.. .++.....-..+....-...|..+.|..+. ++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45679999994 8999999999999999765433 111 000000000000001112468889987443 888
Q ss_pred EeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeee-ecCCCceEEEEEccC
Q 041325 143 AHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTW-VHHVDTVSALALSSD 221 (450)
Q Consensus 143 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~ 221 (450)
.+.|++|++|.+............ +.................+..-.....+..+...+...+ ..|...++++.++.|
T Consensus 105 stNdktiKlWKiyeknlk~va~nn-ls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENN-LSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred ecCCceeeeeeeecccchhhhccc-cccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 889999999998765321111100 000000000000000000000001111112222222222 468889999999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCeE---EEEeec----ccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc---
Q 041325 222 GSLLYSTSWDRTFKIWRTSDFRC---LESVKN----AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN--- 291 (450)
Q Consensus 222 ~~~l~~~~~dg~i~iwd~~~~~~---~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~--- 291 (450)
...++++. |-.|.+|+++-... +..+++ ....-|++..|+|...+.+.-.+..|.|++-|++....-..
T Consensus 184 ~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k 262 (460)
T COG5170 184 KETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK 262 (460)
T ss_pred hheeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence 98888765 78999999875332 222221 12346888999998888888899999999999985431100
Q ss_pred -----ccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCc
Q 041325 292 -----KKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGN 337 (450)
Q Consensus 292 -----~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~ 337 (450)
.......-+.+..+.|..+.|+++|++|++-+ --+|++||.+..+
T Consensus 263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k 312 (460)
T COG5170 263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAK 312 (460)
T ss_pred hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEeccccc
Confidence 01111222334456788999999999998765 3679999998654
No 236
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.43 E-value=6.2e-11 Score=108.91 Aligned_cols=219 Identities=11% Similarity=-0.025 Sum_probs=134.7
Q ss_pred eeEEeecCCCcceEEEEE--eCCEEEEee---CCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-
Q 041325 66 SATLKVKGNSSYIPSLAI--AGKLLYGGS---SNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK- 139 (450)
Q Consensus 66 ~~~l~~~~h~~~v~~~~~--d~~~l~tgs---~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~- 139 (450)
.+.+. .+...+.+.+| ||+.|+..+ .+..|++|++.+++.... ....+.+...+|+||+
T Consensus 191 ~~~lt--~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l-------------~~~~~~~~~~~~SPDG~ 255 (429)
T PRK03629 191 QFVVH--RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV-------------ASFPRHNGAPAFSPDGS 255 (429)
T ss_pred CEEee--cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc-------------cCCCCCcCCeEECCCCC
Confidence 34444 56678888899 899888654 245799999988764433 1122234567899887
Q ss_pred -EEE-EeCCC--eEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEE
Q 041325 140 -LFS-AHQDH--KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSA 215 (450)
Q Consensus 140 -l~s-~~~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 215 (450)
|+. .+.+| .|.+||++++.... +..+...+..
T Consensus 256 ~La~~~~~~g~~~I~~~d~~tg~~~~--------------------------------------------lt~~~~~~~~ 291 (429)
T PRK03629 256 KLAFALSKTGSLNLYVMDLASGQIRQ--------------------------------------------VTDGRSNNTE 291 (429)
T ss_pred EEEEEEcCCCCcEEEEEECCCCCEEE--------------------------------------------ccCCCCCcCc
Confidence 443 34455 48888987763210 1112335677
Q ss_pred EEEccCCCEEEEEeCC-Cc--EEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC--CcEEEEeCcchhhhc
Q 041325 216 LALSSDGSLLYSTSWD-RT--FKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD--TKIKVWKKLRAALQV 290 (450)
Q Consensus 216 ~~~~~~~~~l~~~~~d-g~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~vwd~~~~~~~~ 290 (450)
..|+|+|+.|+..+.+ +. |.++|+.+++.. .+. ..........|+|+++.+++++..+ ..|.+||+.+++..
T Consensus 292 ~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt-~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~- 368 (429)
T PRK03629 292 PTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RIT-WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ- 368 (429)
T ss_pred eEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-Eee-cCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-
Confidence 8999999988777654 44 444567665443 333 2334456788998666444444444 35788898765411
Q ss_pred cccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCc---EEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEE
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRS---ILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV 367 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~---i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 367 (450)
.+. . ........|+|||++|+.++.++. +.++++.... ...+..|.+.+...+|
T Consensus 369 -----~Lt---~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~--------------~~~l~~~~~~~~~p~W 425 (429)
T PRK03629 369 -----VLT---D-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF--------------KARLPATDGQVKFPAW 425 (429)
T ss_pred -----EeC---C-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC--------------eEECccCCCCcCCccc
Confidence 111 1 112345789999999999888764 6677775332 1345556666776766
Q ss_pred eC
Q 041325 368 VS 369 (450)
Q Consensus 368 ~~ 369 (450)
++
T Consensus 426 sp 427 (429)
T PRK03629 426 SP 427 (429)
T ss_pred CC
Confidence 64
No 237
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.42 E-value=4.1e-12 Score=125.31 Aligned_cols=226 Identities=16% Similarity=0.260 Sum_probs=159.0
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC--CeEEEEeCCCe
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG--DKLFSAHQDHK 148 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~~~dg~ 148 (450)
.|-..|.++.- ...+.+||+.||.|++|....++.+..... .|. ..|+.+.|+. +.+..+..||.
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt----------~g~-s~vtr~~f~~qGnk~~i~d~dg~ 2274 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT----------AGN-SRVTRSRFNHQGNKFGIVDGDGD 2274 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeec----------cCc-chhhhhhhcccCCceeeeccCCc
Confidence 45566777766 578899999999999999888876655221 133 7888899984 44888899999
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST 228 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 228 (450)
+.+|..... +...++.|.....++.|-. ..++++
T Consensus 2275 l~l~q~~pk--------------------------------------------~~~s~qchnk~~~Df~Fi~--s~~~ta 2308 (2439)
T KOG1064|consen 2275 LSLWQASPK--------------------------------------------PYTSWQCHNKALSDFRFIG--SLLATA 2308 (2439)
T ss_pred eeecccCCc--------------------------------------------ceeccccCCccccceeeee--hhhhcc
Confidence 999998733 2233446888888888875 556665
Q ss_pred e---CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhccc
Q 041325 229 S---WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS 305 (450)
Q Consensus 229 ~---~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 305 (450)
+ .++.+.+||..-......+...|.+.++++++.| ...++++|+.+|.|++||++..+ +.+.++.
T Consensus 2309 g~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P-~~qllisggr~G~v~l~D~rqrq--------l~h~~~~--- 2376 (2439)
T KOG1064|consen 2309 GRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAP-KHQLLISGGRKGEVCLFDIRQRQ--------LRHTFQA--- 2376 (2439)
T ss_pred ccCCCCCcccchhcccCcccceeeeecCCCceEEEEcC-cceEEEecCCcCcEEEeehHHHH--------HHHHhhh---
Confidence 4 5788999997643333333348999999999999 55599999999999999997766 6666654
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe-CCeEEEEeCCCe
Q 041325 306 AVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV-SNLLFSGSSDNT 380 (450)
Q Consensus 306 ~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~ 380 (450)
+. ...++++|+..|.++||++.....+..+........+ -.+.+ ..+... .+.|++|+.||+
T Consensus 2377 ------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e~ak~gf----Fr~~g--~Q~~v~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2377 ------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSEHAKQGF----FRNIG--MQINVGQCNRIFSCGADGT 2439 (2439)
T ss_pred ------hh-hhheeeccCcccceEEEEccccchhhcCchhhcccch----hhhcC--ceeeeccCceEEEecCCCC
Confidence 34 5678999999999999999876555433322211111 11111 222222 458888888874
No 238
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.42 E-value=9.3e-11 Score=103.67 Aligned_cols=144 Identities=19% Similarity=0.343 Sum_probs=120.7
Q ss_pred CCCEEEEEeCCCcEEEEecCCCeEEEEee-cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhh
Q 041325 221 DGSLLYSTSWDRTFKIWRTSDFRCLESVK-NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQT 299 (450)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 299 (450)
+-..++-|...|.|.+|++..++....+. ..|.+.|+++.++. .-+.|.+++.|+.+..|+..... ....
T Consensus 69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~-~~~ciyS~~ad~~v~~~~~~~~~--------~~~~ 139 (541)
T KOG4547|consen 69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQ-RLGCIYSVGADLKVVYILEKEKV--------IIRI 139 (541)
T ss_pred CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccc-ccCceEecCCceeEEEEecccce--------eeee
Confidence 44568888899999999999999888876 57889999999875 44589999999999999986655 6777
Q ss_pred HhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe-------CC-e
Q 041325 300 LEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV-------SN-L 371 (450)
Q Consensus 300 ~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-------~~-~ 371 (450)
+...+..+.+++.+|||..+++++ +.|++||+++++.+ ..+.+|.++|.+++|. |. +
T Consensus 140 ~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv-------------~~ftgh~s~v~t~~f~~~~~g~~G~~v 204 (541)
T KOG4547|consen 140 WKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVV-------------ITFTGHGSPVRTLSFTTLIDGIIGKYV 204 (541)
T ss_pred eccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEE-------------EEecCCCcceEEEEEEEecccccccee
Confidence 778888899999999999999886 68999999998866 7899999999999986 34 4
Q ss_pred EEEEeCCCeEEEeeCCC
Q 041325 372 LFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 372 l~s~~~dg~v~iwd~~~ 388 (450)
|.+...+..+.+|-+..
T Consensus 205 Lssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 205 LSSAAAERGITVWVVEK 221 (541)
T ss_pred eeccccccceeEEEEEc
Confidence 44555667788887764
No 239
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.41 E-value=2.7e-09 Score=97.26 Aligned_cols=299 Identities=15% Similarity=0.178 Sum_probs=168.6
Q ss_pred EEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCcee
Q 041325 81 LAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSA 160 (450)
Q Consensus 81 ~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~ 160 (450)
....+..+++++.+|.|..+|..+++.......... ........++.++.++.+|.+..+|.++++..
T Consensus 61 p~v~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~------------~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~ 128 (377)
T TIGR03300 61 PAVAGGKVYAADADGTVVALDAETGKRLWRVDLDER------------LSGGVGADGGLVFVGTEKGEVIALDAEDGKEL 128 (377)
T ss_pred eEEECCEEEEECCCCeEEEEEccCCcEeeeecCCCC------------cccceEEcCCEEEEEcCCCEEEEEECCCCcEe
Confidence 344788899999999999999999987765332211 11123344666888999999999999888765
Q ss_pred EEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecc--eeeeec-CCCceEEEE--Ecc--CCCEEEEEeCCCc
Q 041325 161 YYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHK--KCTWVH-HVDTVSALA--LSS--DGSLLYSTSWDRT 233 (450)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~v~~~~--~~~--~~~~l~~~~~dg~ 233 (450)
........ ....+...+....+...++.+...+.. ...+.. .......+. -+| .+..++.+..++.
T Consensus 129 W~~~~~~~-------~~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~~~~~g~ 201 (377)
T TIGR03300 129 WRAKLSSE-------VLSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLVGFAGGK 201 (377)
T ss_pred eeeccCce-------eecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEEECCCCE
Confidence 43332211 000011011111111222222221111 111110 001100000 011 1346778888899
Q ss_pred EEEEecCCCeEEEEeeccccc---c------e-EEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhc
Q 041325 234 FKIWRTSDFRCLESVKNAHDD---A------I-NAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKH 303 (450)
Q Consensus 234 i~iwd~~~~~~~~~~~~~~~~---~------v-~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 303 (450)
+..+|.++++.+......... . + ....+ .++.+++++.+|.+..||..+++. +.... .
T Consensus 202 v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~---~~~~vy~~~~~g~l~a~d~~tG~~--------~W~~~-~ 269 (377)
T TIGR03300 202 LVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV---DGGQVYAVSYQGRVAALDLRSGRV--------LWKRD-A 269 (377)
T ss_pred EEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE---ECCEEEEEEcCCEEEEEECCCCcE--------EEeec-c
Confidence 999999999876554311110 0 1 11112 234777888899999999987761 11111 1
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEE
Q 041325 304 KSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRI 383 (450)
Q Consensus 304 ~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~i 383 (450)
........ ++..+++++.||.|+.+|..+++.+.... .+. .....+....++.+++++.+|.|++
T Consensus 270 -~~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~----------~~~--~~~~ssp~i~g~~l~~~~~~G~l~~ 334 (377)
T TIGR03300 270 -SSYQGPAV--DDNRLYVTDADGVVVALDRRSGSELWKND----------ELK--YRQLTAPAVVGGYLVVGDFEGYLHW 334 (377)
T ss_pred -CCccCceE--eCCEEEEECCCCeEEEEECCCCcEEEccc----------ccc--CCccccCEEECCEEEEEeCCCEEEE
Confidence 11112222 46778888899999999999987663221 111 1112233346789999999999999
Q ss_pred eeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEE
Q 041325 384 WRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIW 447 (450)
Q Consensus 384 wd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw 447 (450)
+|..++ +.+..+..+...+..--...++ .|+.++.||.|+.+
T Consensus 335 ~d~~tG--------~~~~~~~~~~~~~~~sp~~~~~--------------~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 335 LSREDG--------SFVARLKTDGSGIASPPVVVGD--------------GLLVQTRDGDLYAF 376 (377)
T ss_pred EECCCC--------CEEEEEEcCCCccccCCEEECC--------------EEEEEeCCceEEEe
Confidence 998875 5555665555433333223333 48888899988765
No 240
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=1.2e-10 Score=107.66 Aligned_cols=178 Identities=13% Similarity=-0.004 Sum_probs=116.4
Q ss_pred cCCCceEEEEEccCCCEEEEEeC---CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCc--EEEEe
Q 041325 208 HHVDTVSALALSSDGSLLYSTSW---DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTK--IKVWK 282 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~vwd 282 (450)
.|...+...+|+|||+.|+..+. +..|.+||+.+++... +. .+.+.+....|+|+++.++++.+.++. |.+||
T Consensus 199 ~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 276 (435)
T PRK05137 199 DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL-VG-NFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMD 276 (435)
T ss_pred cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE-ee-cCCCcccCcEECCCCCEEEEEEecCCCceEEEEE
Confidence 46678999999999998887763 4689999998876543 33 355677788999977766667776665 66678
Q ss_pred CcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC-CC--cEEEEEcCCCceeeeCCCCCCceeeeccccCCc
Q 041325 283 KLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC-DR--SILVWERDQGNYIVDGDDDSGHMVLKGALRGHT 359 (450)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (450)
+.++. ...+..+........|+|||+.|+..+. +| .|++||+..++.. .+..+.
T Consensus 277 ~~~~~---------~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~--------------~lt~~~ 333 (435)
T PRK05137 277 LRSGT---------TTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR--------------RISFGG 333 (435)
T ss_pred CCCCc---------eEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE--------------EeecCC
Confidence 76654 1223334455677899999998887764 33 6888887755321 111123
Q ss_pred cceEEEEEe--CCeEEEEeCC---CeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 360 KAILCLAVV--SNLLFSGSSD---NTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 360 ~~v~~~~~~--~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
..+....|+ ++.|+..+.+ ..|.+||+..+ ....+. ....+....|+||++
T Consensus 334 ~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~---------~~~~lt-~~~~~~~p~~spDG~ 389 (435)
T PRK05137 334 GRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS---------GERILT-SGFLVEGPTWAPNGR 389 (435)
T ss_pred CcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC---------ceEecc-CCCCCCCCeECCCCC
Confidence 334455666 4466655543 35788887543 112222 223467889999998
No 241
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.41 E-value=3.8e-11 Score=97.00 Aligned_cols=115 Identities=19% Similarity=0.319 Sum_probs=87.1
Q ss_pred CCCceEEEEEccCCCEEEEE--eCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcC---CCcEEEEeC
Q 041325 209 HVDTVSALALSSDGSLLYST--SWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSA---DTKIKVWKK 283 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~vwd~ 283 (450)
..++|.+++|+|+|+.|++. ..++.|.+||++ ++.+..+. ...++.+.|+|.+. ++++++. .|.|.+||.
T Consensus 58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~---~~~~n~i~wsP~G~-~l~~~g~~n~~G~l~~wd~ 132 (194)
T PF08662_consen 58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG---TQPRNTISWSPDGR-FLVLAGFGNLNGDLEFWDV 132 (194)
T ss_pred CCCceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec---CCCceEEEECCCCC-EEEEEEccCCCcEEEEEEC
Confidence 34579999999999987655 356799999996 66666664 46778999999655 6666553 467999999
Q ss_pred cchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC------CCcEEEEEcCCCcee
Q 041325 284 LRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC------DRSILVWERDQGNYI 339 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~------dg~i~vwd~~~~~~~ 339 (450)
++.+ .+.... | ..++.++|+|||++|+++.. |+.++||+.. |+.+
T Consensus 133 ~~~~--------~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l 183 (194)
T PF08662_consen 133 RKKK--------KISTFE-H-SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLL 183 (194)
T ss_pred CCCE--------Eeeccc-c-CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEe
Confidence 7554 444443 2 35789999999999999875 7889999985 5544
No 242
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.40 E-value=2.5e-11 Score=98.08 Aligned_cols=149 Identities=15% Similarity=0.280 Sum_probs=102.4
Q ss_pred EEEEEccCCCEEEEEeC----------CCcEEEEecCC-CeEEEEeecccccceEEEEEeecCCcEE-EEEcCCCcEEEE
Q 041325 214 SALALSSDGSLLYSTSW----------DRTFKIWRTSD-FRCLESVKNAHDDAINAIVVSKSNDGFV-YTGSADTKIKVW 281 (450)
Q Consensus 214 ~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l-~~~~~dg~i~vw 281 (450)
..+.|+++|++|+.-.. -+...+|.++. ......+.....++|.+++|+|.++.++ +.|..++.|.+|
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly 88 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY 88 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence 45778998887765433 13355555532 2344455434556799999999777654 345567899999
Q ss_pred eCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC---CCcEEEEEcCCCceeeeCCCCCCceeeeccccCC
Q 041325 282 KKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC---DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358 (450)
Q Consensus 282 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (450)
|++.. .+..+ ....+..+.|+|+|++|++++. .|.|.+||.++.+.+ ... +
T Consensus 89 d~~~~---------~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i-------------~~~--~ 142 (194)
T PF08662_consen 89 DVKGK---------KIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKI-------------STF--E 142 (194)
T ss_pred cCccc---------EeEee--cCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEe-------------ecc--c
Confidence 98522 33344 3467788999999999999874 467999999977655 222 2
Q ss_pred ccceEEEEEeCC--eEEEEeC------CCeEEEeeCCC
Q 041325 359 TKAILCLAVVSN--LLFSGSS------DNTIRIWRRSS 388 (450)
Q Consensus 359 ~~~v~~~~~~~~--~l~s~~~------dg~v~iwd~~~ 388 (450)
...++.++|+++ +++++.. |+.++||++..
T Consensus 143 ~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 143 HSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred cCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 234688999855 7777764 78899999863
No 243
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.39 E-value=7e-11 Score=109.10 Aligned_cols=178 Identities=15% Similarity=0.056 Sum_probs=112.7
Q ss_pred cCCCceEEEEEccCCCEEEEEeCC---CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCC--cEEEEe
Q 041325 208 HHVDTVSALALSSDGSLLYSTSWD---RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADT--KIKVWK 282 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~vwd 282 (450)
.+...+.+.+|+|+|+.|+..+.+ ..|.+||+.+++..... ...+...+..|+|+++.++++.+.+| .|++||
T Consensus 201 ~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~--~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d 278 (433)
T PRK04922 201 RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVA--SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMD 278 (433)
T ss_pred cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEec--cCCCCccCceECCCCCEEEEEEeCCCCceEEEEE
Confidence 355678899999999998887643 46999999887654332 23445567899997775666666665 588999
Q ss_pred CcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC-CCc--EEEEEcCCCceeeeCCCCCCceeeeccccCCc
Q 041325 283 KLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC-DRS--ILVWERDQGNYIVDGDDDSGHMVLKGALRGHT 359 (450)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~-dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (450)
+.+++ ...+..+.......+|+|||+.|+..+. +|. |+++|+.+++.. .+..+.
T Consensus 279 ~~~g~---------~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~--------------~lt~~g 335 (433)
T PRK04922 279 LGSRQ---------LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE--------------RLTFQG 335 (433)
T ss_pred CCCCC---------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE--------------EeecCC
Confidence 87654 1222333444567899999998887764 444 666676655421 111111
Q ss_pred cceEEEEEe--CCeEEEEeCCC---eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 360 KAILCLAVV--SNLLFSGSSDN---TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 360 ~~v~~~~~~--~~~l~s~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
......+|+ +++|+..+.++ .|.+||+.++ .. ..+. +........|+||++
T Consensus 336 ~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g--------~~-~~Lt-~~~~~~~p~~spdG~ 391 (433)
T PRK04922 336 NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG--------SV-RTLT-PGSLDESPSFAPNGS 391 (433)
T ss_pred CCccCEEECCCCCEEEEEECCCCceeEEEEECCCC--------Ce-EECC-CCCCCCCceECCCCC
Confidence 223345665 55666554332 5899998764 11 2232 222345678999998
No 244
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.39 E-value=1.9e-11 Score=100.74 Aligned_cols=221 Identities=21% Similarity=0.303 Sum_probs=166.6
Q ss_pred eeecCCCceEEEEEccCCCEEEEEeCCCcEEEEec-CCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeC
Q 041325 205 TWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRT-SDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKK 283 (450)
Q Consensus 205 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 283 (450)
.+.+|.+.+++...-|...-+++.+.|.++++|-- +.++.-..+......++.++.+.+ ....|++|-.+|.+.-+.+
T Consensus 19 ~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~-e~~~L~vg~~ngtvtefs~ 97 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS-ESRRLYVGQDNGTVTEFAL 97 (404)
T ss_pred hhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec-cceEEEEEEecceEEEEEh
Confidence 45678889999888887778999999999999953 345544445445677889999886 4557999999999998877
Q ss_pred cchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCcee----eeC-----------------
Q 041325 284 LRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYI----VDG----------------- 342 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~----~~~----------------- 342 (450)
...- ......+....|...+..+-|+-...++++.+.|..+.---.+.+..+ .+.
T Consensus 98 sedf----nkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~ 173 (404)
T KOG1409|consen 98 SEDF----NKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDH 173 (404)
T ss_pred hhhh----hhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEeccc
Confidence 5543 334456677789999999999888888888888877654444443321 000
Q ss_pred -------CCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEE
Q 041325 343 -------DDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCL 413 (450)
Q Consensus 343 -------~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l 413 (450)
.-......+...+.+|...+.+++|++. .|++|..|..+.+||+.-. ......+.+|...|..+
T Consensus 174 ~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~-------~g~~~el~gh~~kV~~l 246 (404)
T KOG1409|consen 174 SGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR-------KGTAYELQGHNDKVQAL 246 (404)
T ss_pred ccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCC-------cceeeeeccchhhhhhh
Confidence 0011222344567889999999999954 9999999999999999743 24456778899999999
Q ss_pred EEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 414 TAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
...+.-. .+++++.||.|.+|+++
T Consensus 247 ~~~~~t~-------------~l~S~~edg~i~~w~mn 270 (404)
T KOG1409|consen 247 SYAQHTR-------------QLISCGEDGGIVVWNMN 270 (404)
T ss_pred hhhhhhe-------------eeeeccCCCeEEEEecc
Confidence 8888877 89999999999999974
No 245
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.38 E-value=6e-11 Score=104.37 Aligned_cols=241 Identities=17% Similarity=0.179 Sum_probs=162.3
Q ss_pred ecCCCceEEEEEeCCe---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEee
Q 041325 124 TGNGDAVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRR 200 (450)
Q Consensus 124 ~~h~~~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (450)
..+....+.|..++|+ +++|...-.|++||+......
T Consensus 48 fe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK---------------------------------------- 87 (703)
T KOG2321|consen 48 FEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK---------------------------------------- 87 (703)
T ss_pred cCCccccceeEecCCCcEEEEecccCCceEEEEcccceee----------------------------------------
Confidence 3677788999999888 888889999999999876321
Q ss_pred cceeeeecC--CCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcE
Q 041325 201 HKKCTWVHH--VDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKI 278 (450)
Q Consensus 201 ~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 278 (450)
+..| ...|.-..++.|-..++.-..|..|.+..--....... -...-..++++.....+ +.++....|
T Consensus 88 -----FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~R----IP~~GRDm~y~~~scDl-y~~gsg~ev 157 (703)
T KOG2321|consen 88 -----FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRTR----IPKFGRDMKYHKPSCDL-YLVGSGSEV 157 (703)
T ss_pred -----eeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeeee----cCcCCccccccCCCccE-EEeecCcce
Confidence 1112 22344444555655566666677777654322111111 22344566666544434 444445678
Q ss_pred EEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC
Q 041325 279 KVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358 (450)
Q Consensus 279 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (450)
+-++++.+. .+..+....+.++++..++...+|++|+.+|.|..||.++...+..+... .....|
T Consensus 158 YRlNLEqGr--------fL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~-------~~v~s~ 222 (703)
T KOG2321|consen 158 YRLNLEQGR--------FLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAA-------SSVNSH 222 (703)
T ss_pred EEEEccccc--------cccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecc-------cccCCC
Confidence 888987776 66777777789999999999999999999999999999987654322221 222233
Q ss_pred c-----cceEEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCc
Q 041325 359 T-----KAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSST 431 (450)
Q Consensus 359 ~-----~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~ 431 (450)
. ..|+++.|.++ .+++|..+|.|.|||+++. ...+..-++..-+|..+.|.+.+.
T Consensus 223 pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~-------~pl~~kdh~~e~pi~~l~~~~~~~----------- 284 (703)
T KOG2321|consen 223 PGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS-------KPLLVKDHGYELPIKKLDWQDTDQ----------- 284 (703)
T ss_pred ccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC-------CceeecccCCccceeeecccccCC-----------
Confidence 3 34999999865 8999999999999999974 122233344466899999987733
Q ss_pred eEEEEEcccCCcEEEEE
Q 041325 432 SFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 432 ~~~l~s~~~Dg~i~iw~ 448 (450)
+..++|. +...++|||
T Consensus 285 q~~v~S~-Dk~~~kiWd 300 (703)
T KOG2321|consen 285 QNKVVSM-DKRILKIWD 300 (703)
T ss_pred CceEEec-chHHhhhcc
Confidence 1145555 455688897
No 246
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.38 E-value=4.3e-11 Score=98.72 Aligned_cols=271 Identities=14% Similarity=0.220 Sum_probs=160.8
Q ss_pred CCceEEEEEe--CCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeeccee
Q 041325 127 GDAVKSLVVL--GDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKC 204 (450)
Q Consensus 127 ~~~v~~l~~~--~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (450)
.+-|.++.|. ++.|++|..+|.|.++.-+..... .+.....+...+..+ .-.
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~-----------ey~~~t~fqshepEF---------------DYL 78 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKG-----------EYNFQTEFQSHEPEF---------------DYL 78 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeeccccccc-----------ceeeeeeeeccCccc---------------chh
Confidence 3567888887 555999999999999976544210 000000110000000 000
Q ss_pred eeecCCCceEEEEEccCC--CEEEEEeCCCcEEEEecCCCe-----------------------------------EEEE
Q 041325 205 TWVHHVDTVSALALSSDG--SLLYSTSWDRTFKIWRTSDFR-----------------------------------CLES 247 (450)
Q Consensus 205 ~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~-----------------------------------~~~~ 247 (450)
.-..-...|+.+.|.+++ ..++..+.|.+|++|.+.... +.+.
T Consensus 79 kSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv 158 (433)
T KOG1354|consen 79 KSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRV 158 (433)
T ss_pred hhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeee
Confidence 000123468888998854 467778889999999875421 1222
Q ss_pred eecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcC-CCCEEEEeeCCC
Q 041325 248 VKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST-DGTVLYSGACDR 326 (450)
Q Consensus 248 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~g~~dg 326 (450)
+...|.--|+++.++. +.-.+....|=.|.+|+++-.....+.-......+.....-|++..|+| ..+.++-.+..|
T Consensus 159 ~aNaHtyhiNSIS~Ns--D~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKG 236 (433)
T KOG1354|consen 159 YANAHTYHINSISVNS--DKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKG 236 (433)
T ss_pred ccccceeEeeeeeecC--ccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCC
Confidence 3357788899999985 3334445567889999986533111111111223334456689999999 456788888899
Q ss_pred cEEEEEcCCCcee------eeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCce
Q 041325 327 SILVWERDQGNYI------VDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYS 398 (450)
Q Consensus 327 ~i~vwd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~ 398 (450)
+|++.|++..... ++...+.. ...-+..--..|..+.|+ |++|++-+. -+|++||++.. .+
T Consensus 237 tIrLcDmR~~aLCd~hsKlfEepedp~---~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme-------~~ 305 (433)
T KOG1354|consen 237 TIRLCDMRQSALCDAHSKLFEEPEDPS---SRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNME-------AK 305 (433)
T ss_pred cEEEeechhhhhhcchhhhhccccCCc---chhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecccc-------CC
Confidence 9999999954321 11111111 111122223456778887 568877543 57999999653 23
Q ss_pred eEEEecCCCc------------c---eEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 399 CLAVLEGHRR------------P---VKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 399 ~~~~~~~h~~------------~---v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
++..+.-|.. . -..++|+-++. +++|||....++++++
T Consensus 306 pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~-------------~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 306 PVETYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDS-------------YVMTGSYNNVFRVFNL 358 (433)
T ss_pred cceEEeehHhHHHHHHHHhhccchhheeEEEEcCCcc-------------eEecccccceEEEecC
Confidence 4444444421 1 23456666666 9999999999999874
No 247
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.37 E-value=2.7e-11 Score=113.78 Aligned_cols=184 Identities=16% Similarity=0.245 Sum_probs=143.0
Q ss_pred eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCce--EE---EEEeCCe--EEEEeCCCeEEEEEcCC
Q 041325 84 AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAV--KS---LVVLGDK--LFSAHQDHKIRVWKIDN 156 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v--~~---l~~~~~~--l~s~~~dg~i~iw~~~~ 156 (450)
+...++.++.+..+.+||.......... .+...+ .+ +.++++. +++|+.-+.|.+|+...
T Consensus 98 e~k~i~l~~~~ns~~i~d~~~~~~~~~i-------------~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~ 164 (967)
T KOG0974|consen 98 ENKKIALVTSRNSLLIRDSKNSSVLSKI-------------QSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHE 164 (967)
T ss_pred hcceEEEEEcCceEEEEecccCceehhc-------------CCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccc
Confidence 6788888888999999998876644331 121111 11 1223343 88999999999999873
Q ss_pred CceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEE
Q 041325 157 NTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKI 236 (450)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 236 (450)
.. ....+.+|.+.+..+.++.+|.++++.++|..+++
T Consensus 165 dn-------------------------------------------~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRl 201 (967)
T KOG0974|consen 165 DN-------------------------------------------KPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRL 201 (967)
T ss_pred cC-------------------------------------------CcceecccCCceEEEEEccCCcEEEEEecCcceee
Confidence 31 11135589999999999999999999999999999
Q ss_pred EecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcc-cceEEEEEcCC
Q 041325 237 WRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHK-SAVTALALSTD 315 (450)
Q Consensus 237 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~i~~l~~~~~ 315 (450)
|++++.+......-+|...+..+.+.|. .+++++.|-+.++|+....+ +..+.+|. ..|..++..++
T Consensus 202 W~i~s~~~~~~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW~~~~~~---------l~~y~~h~g~~iw~~~~~~~ 269 (967)
T KOG0974|consen 202 WPIDSREVLGCTGFGHSARVWACCFLPN---RIITVGEDCTCRVWGVNGTQ---------LEVYDEHSGKGIWKIAVPIG 269 (967)
T ss_pred eecccccccCcccccccceeEEEEeccc---eeEEeccceEEEEEecccce---------ehhhhhhhhcceeEEEEcCC
Confidence 9999988777444489999999999963 89999999999999754333 33555554 56999999999
Q ss_pred CCEEEEeeCCCcEEEEEcCC
Q 041325 316 GTVLYSGACDRSILVWERDQ 335 (450)
Q Consensus 316 ~~~l~~g~~dg~i~vwd~~~ 335 (450)
...+++++.||.+++||+..
T Consensus 270 ~~~~vT~g~Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 270 VIIKVTGGNDSTLKLWDLNG 289 (967)
T ss_pred ceEEEeeccCcchhhhhhhc
Confidence 99999999999999999865
No 248
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=3.1e-10 Score=103.54 Aligned_cols=355 Identities=12% Similarity=0.095 Sum_probs=214.9
Q ss_pred CCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE-------e-C------CEEEEeeCCCcEEEecCCCCCceeeee
Q 041325 47 LAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI-------A-G------KLLYGGSSNGEIRAWNRDPNNYVNITS 112 (450)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~-------d-~------~~l~tgs~dg~v~vw~~~~~~~~~~~~ 112 (450)
++..+.+.+..-...+.|.++++. -|...|+.+.| | + -+||++...|.|.+||...+.....
T Consensus 29 iAygshslV~VVDs~s~q~iqsie--~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~-- 104 (1062)
T KOG1912|consen 29 IAYGSHSLVSVVDSRSLQLIQSIE--LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINW-- 104 (1062)
T ss_pred EEEecCceEEEEehhhhhhhhccc--cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhh--
Confidence 444455555555667778999999 89999999999 1 1 3678888899999999987765554
Q ss_pred cCCCCcceeEEecCCCceEEEEEeCC------eEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcce
Q 041325 113 TDVGDHANVVATGNGDAVKSLVVLGD------KLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRF 186 (450)
Q Consensus 113 ~~~~~~~~~~~~~h~~~v~~l~~~~~------~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (450)
+..|..++..++|.+. .|++-..-.++.+|+..+++.......... ...++..-|.+...+
T Consensus 105 ----------l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~---iLs~f~~DPfd~rh~ 171 (1062)
T KOG1912|consen 105 ----------LSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE---ILSCFRVDPFDSRHF 171 (1062)
T ss_pred ----------hcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc---ceeeeeeCCCCcceE
Confidence 5678889999999732 277777778999999998875433322211 111111112111111
Q ss_pred eEeeecC-----------------ceEEEee-------------------------------------------------
Q 041325 187 TKCFLAN-----------------NYVQVRR------------------------------------------------- 200 (450)
Q Consensus 187 ~~~~~~~-----------------~~~~~~~------------------------------------------------- 200 (450)
......+ ..+++..
T Consensus 172 ~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~p 251 (1062)
T KOG1912|consen 172 CVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFP 251 (1062)
T ss_pred EEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEec
Confidence 1100000 0000000
Q ss_pred -----------cceeeeecCCCceEEEEEccC--CCEEEEEeCCCcEEEEecCC----------------CeEEEEeecc
Q 041325 201 -----------HKKCTWVHHVDTVSALALSSD--GSLLYSTSWDRTFKIWRTSD----------------FRCLESVKNA 251 (450)
Q Consensus 201 -----------~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~----------------~~~~~~~~~~ 251 (450)
.......-..+.+.-+.+-|+ .+.|++.-.||.+.+|--+. +.....+...
T Consensus 252 rellv~dle~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m 331 (1062)
T KOG1912|consen 252 RELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPM 331 (1062)
T ss_pred cceEEEcchhhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccccceEEEeec
Confidence 000001112223334555554 45688888999999997654 2222222212
Q ss_pred cccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccc-----------------------hhhhhHhhcccceE
Q 041325 252 HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKH-----------------------SLVQTLEKHKSAVT 308 (450)
Q Consensus 252 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----------------------~~~~~~~~~~~~i~ 308 (450)
.+..+......|.....++.--.+|.+.+|.+.+++....... ..+....+|....+
T Consensus 332 ~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~ 411 (1062)
T KOG1912|consen 332 EEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKLVGKTSLISLSDDGSHSSGST 411 (1062)
T ss_pred hhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceeehhhccccchhhcCCCCCCce
Confidence 2233334444554454555556678889999886553211100 01111123444444
Q ss_pred EEEEcC-----------CC-------CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC
Q 041325 309 ALALST-----------DG-------TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN 370 (450)
Q Consensus 309 ~l~~~~-----------~~-------~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 370 (450)
+....| .+ .+++.|...|+|.++|+.++.. ...+..|...|.++.|.|+
T Consensus 412 ~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v-------------~~~fsvht~~VkgleW~g~ 478 (1062)
T KOG1912|consen 412 CVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAV-------------AASFSVHTSLVKGLEWLGN 478 (1062)
T ss_pred eeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhh-------------hhhhcccccceeeeeeccc
Confidence 444332 22 3688899999999999998753 3678889999999999977
Q ss_pred -eEEEEeC----------CCeEEEeeCCCCccccCCCceeEEE-ecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEc
Q 041325 371 -LLFSGSS----------DNTIRIWRRSSSVTDHQKGYSCLAV-LEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSG 438 (450)
Q Consensus 371 -~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~ 438 (450)
.+++.+. -+.+.+-|+++|.. +.++. -+....+|..+..+..+. ||+..
T Consensus 479 sslvSfsys~~n~~sg~vrN~l~vtdLrtGls------k~fR~l~~~despI~~irvS~~~~-------------yLai~ 539 (1062)
T KOG1912|consen 479 SSLVSFSYSHVNSASGGVRNDLVVTDLRTGLS------KRFRGLQKPDESPIRAIRVSSSGR-------------YLAIL 539 (1062)
T ss_pred eeEEEeeeccccccccceeeeEEEEEcccccc------cccccCCCCCcCcceeeeecccCc-------------eEEEE
Confidence 4444332 24567888888632 11221 233567899999999998 99999
Q ss_pred ccCCcEEEEEeC
Q 041325 439 SLDCEIKIWQIR 450 (450)
Q Consensus 439 ~~Dg~i~iw~l~ 450 (450)
-.|.-+.+||+|
T Consensus 540 Fr~~plEiwd~k 551 (1062)
T KOG1912|consen 540 FRREPLEIWDLK 551 (1062)
T ss_pred ecccchHHHhhc
Confidence 999999999985
No 249
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.35 E-value=8.2e-12 Score=123.24 Aligned_cols=192 Identities=18% Similarity=0.317 Sum_probs=145.1
Q ss_pred EecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEee
Q 041325 123 ATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRR 200 (450)
Q Consensus 123 ~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (450)
...+-..|.++.-+|.. .+||+.||.|++|....++.+.....
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt----------------------------------- 2248 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRT----------------------------------- 2248 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeec-----------------------------------
Confidence 44555667777766655 88999999999999998854321111
Q ss_pred cceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEc---CCCc
Q 041325 201 HKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGS---ADTK 277 (450)
Q Consensus 201 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~ 277 (450)
.-...|+.+.|+.+|+.+..+..||.+.+|.+. .+.....+ .|......+.|. . ..+++++ .++.
T Consensus 2249 -------~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~q-chnk~~~Df~Fi--~-s~~~tag~s~d~~n 2316 (2439)
T KOG1064|consen 2249 -------AGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQ-CHNKALSDFRFI--G-SLLATAGRSSDNRN 2316 (2439)
T ss_pred -------cCcchhhhhhhcccCCceeeeccCCceeecccC-Ccceeccc-cCCccccceeee--e-hhhhccccCCCCCc
Confidence 122578999999999999999999999999997 55666666 788888888888 3 3556654 4789
Q ss_pred EEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccC
Q 041325 278 IKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG 357 (450)
Q Consensus 278 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (450)
+.+||..-.. ....+. ..|.+.++++++-|..++|++|+.+|.|++||++..+.. +.++.
T Consensus 2317 ~~lwDtl~~~-----~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~-------------h~~~~ 2376 (2439)
T KOG1064|consen 2317 VCLWDTLLPP-----MNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLR-------------HTFQA 2376 (2439)
T ss_pred ccchhcccCc-----ccceee--eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHH-------------HHhhh
Confidence 9999974432 111233 679999999999999999999999999999999965433 22222
Q ss_pred CccceEEEEEeCCeEEEEeCCCeEEEeeCCCC
Q 041325 358 HTKAILCLAVVSNLLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 358 ~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~ 389 (450)
+. ..+++++|+..|.++||++...
T Consensus 2377 -------~~-~~~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2377 -------LD-TREYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred -------hh-hhheeeccCcccceEEEEcccc
Confidence 22 3569999999999999998863
No 250
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.35 E-value=1.1e-10 Score=103.12 Aligned_cols=187 Identities=14% Similarity=0.257 Sum_probs=145.2
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCeEEEEeecc--cccceEEEEEee-------------------cCCcEEEEEcCCCcE
Q 041325 220 SDGSLLYSTSWDRTFKIWRTSDFRCLESVKNA--HDDAINAIVVSK-------------------SNDGFVYTGSADTKI 278 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~~~-------------------~~~~~l~~~~~dg~i 278 (450)
|...++|....||.+++||...++....+... ..+...+..|.- .+...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 45678999999999999999998887777521 123344444431 112268889999999
Q ss_pred EEEeCcchhhhccccchhhhhH--hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeecccc
Q 041325 279 KVWKKLRAALQVNKKHSLVQTL--EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALR 356 (450)
Q Consensus 279 ~vwd~~~~~~~~~~~~~~~~~~--~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 356 (450)
.+|++..++ ....+ ..|.+.|.++.++.+-..|.+++.|+.+..|+....+.+ ....
T Consensus 83 ~~ys~~~g~--------it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~-------------~~~~ 141 (541)
T KOG4547|consen 83 LLYSVAGGE--------ITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVII-------------RIWK 141 (541)
T ss_pred EEEEecCCe--------EEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceee-------------eeec
Confidence 999998776 33333 358899999999988899999999999999999987654 5566
Q ss_pred CCccceEEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEec-----CCCCCCCCCCC
Q 041325 357 GHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVD-----SDYSNRNSDHS 429 (450)
Q Consensus 357 ~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-----~~~~~~~~~~~ 429 (450)
.....+.++.+.++ .+++++ +.|++||++++ +.+..+.+|.++|.+++|..+ |.+
T Consensus 142 ~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~k--------evv~~ftgh~s~v~t~~f~~~~~g~~G~~-------- 203 (541)
T KOG4547|consen 142 EQKPLVSSLCISPDGKILLTAS--RQIKVLDIETK--------EVVITFTGHGSPVRTLSFTTLIDGIIGKY-------- 203 (541)
T ss_pred cCCCccceEEEcCCCCEEEecc--ceEEEEEccCc--------eEEEEecCCCcceEEEEEEEeccccccce--------
Confidence 66677788888877 777665 67999999985 889999999999999999988 342
Q ss_pred CceEEEEEcccCCcEEEEEe
Q 041325 430 STSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 430 ~~~~~l~s~~~Dg~i~iw~l 449 (450)
+|.+...+..|.+|-+
T Consensus 204 ----vLssa~~~r~i~~w~v 219 (541)
T KOG4547|consen 204 ----VLSSAAAERGITVWVV 219 (541)
T ss_pred ----eeeccccccceeEEEE
Confidence 6667777777888865
No 251
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.32 E-value=2.7e-10 Score=92.06 Aligned_cols=250 Identities=16% Similarity=0.139 Sum_probs=153.6
Q ss_pred CcceEEEEE-----eCC-EEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC--CeEEEEeCC
Q 041325 75 SSYIPSLAI-----AGK-LLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG--DKLFSAHQD 146 (450)
Q Consensus 75 ~~~v~~~~~-----d~~-~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~s~~~d 146 (450)
...+..+.| +|. .++-+-.+|.|.++................... ......++.|+. ..++++..+
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki------~~~~~lslD~~~~~~~i~vs~s~ 142 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKI------SVVEALSLDISTSGTKIFVSDSR 142 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhh------hheeeeEEEeeccCceEEEEcCC
Confidence 445666666 465 566677789999887654432222111110000 000234455553 348888888
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLL 225 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l 225 (450)
|.+.+-+..... -+....++.|.-++....|+. +.+++
T Consensus 143 G~~~~v~~t~~~-----------------------------------------le~vq~wk~He~E~Wta~f~~~~pnlv 181 (339)
T KOG0280|consen 143 GSISGVYETEMV-----------------------------------------LEKVQTWKVHEFEAWTAKFSDKEPNLV 181 (339)
T ss_pred CcEEEEecceee-----------------------------------------eeecccccccceeeeeeecccCCCceE
Confidence 888755544331 122334567888999999987 66899
Q ss_pred EEEeCCCcEEEEecC-CCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcc
Q 041325 226 YSTSWDRTFKIWRTS-DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHK 304 (450)
Q Consensus 226 ~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 304 (450)
.+|+.|+.+..||++ .++.+..-...|...|.+|.-+|....++++|+.|-.|++||.|+-. +++..-. ..
T Consensus 182 ytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~-------kPl~~~~-v~ 253 (339)
T KOG0280|consen 182 YTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMG-------KPLFKAK-VG 253 (339)
T ss_pred EecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhccc-------CccccCc-cc
Confidence 999999999999999 44455443336889999999999878899999999999999998533 1232222 34
Q ss_pred cceEEEEEcCC--CCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEe-CCC
Q 041325 305 SAVTALALSTD--GTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGS-SDN 379 (450)
Q Consensus 305 ~~i~~l~~~~~--~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~-~dg 379 (450)
+.|+.+..+|. +.+|+++-.+| .+|-+...+..- ........+.|.+-+..-.|+. ..++||+ .|+
T Consensus 254 GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e--------~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk 324 (339)
T KOG0280|consen 254 GGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLE--------FQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDK 324 (339)
T ss_pred cceEEEEecchhhhHHHHHHHhcC-ceEEEecccccc--------hheeeeccccccceeeccccccccceeeeeecccc
Confidence 88999999993 33444444444 666666543210 1112234455655555555532 2577765 466
Q ss_pred eEE-EeeCCC
Q 041325 380 TIR-IWRRSS 388 (450)
Q Consensus 380 ~v~-iwd~~~ 388 (450)
.++ +|-.-+
T Consensus 325 ~~~~~Wl~~t 334 (339)
T KOG0280|consen 325 KIRQLWLHIT 334 (339)
T ss_pred ceeeeeeecc
Confidence 644 665443
No 252
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.32 E-value=3.3e-08 Score=88.40 Aligned_cols=283 Identities=17% Similarity=0.254 Sum_probs=166.5
Q ss_pred EEEeeCC----CcEEEecC--CCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeC----CCeEEEEEcC
Q 041325 88 LYGGSSN----GEIRAWNR--DPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQ----DHKIRVWKID 155 (450)
Q Consensus 88 l~tgs~d----g~v~vw~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~----dg~i~iw~~~ 155 (450)
++.|+.. +.|.+|++ +++++.... ..........|+++++. |+++.. ++.|..|++.
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~-----------~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~ 70 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQ-----------TVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRID 70 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEEEEEE-----------EEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEE
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCceEee-----------eecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEEC
Confidence 4555555 78999988 344433221 11233456677887665 766655 5789999887
Q ss_pred CCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe-CCCcE
Q 041325 156 NNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS-WDRTF 234 (450)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i 234 (450)
..... +..+...+ ........++++|++++|+++. .+|.|
T Consensus 71 ~~~g~------------L~~~~~~~---------------------------~~g~~p~~i~~~~~g~~l~vany~~g~v 111 (345)
T PF10282_consen 71 PDTGT------------LTLLNSVP---------------------------SGGSSPCHIAVDPDGRFLYVANYGGGSV 111 (345)
T ss_dssp TTTTE------------EEEEEEEE---------------------------ESSSCEEEEEECTTSSEEEEEETTTTEE
T ss_pred CCcce------------eEEeeeec---------------------------cCCCCcEEEEEecCCCEEEEEEccCCeE
Confidence 64100 01111111 1233556799999999988886 58999
Q ss_pred EEEecCC-CeEEEE---ee---------cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhH-
Q 041325 235 KIWRTSD-FRCLES---VK---------NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTL- 300 (450)
Q Consensus 235 ~iwd~~~-~~~~~~---~~---------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~- 300 (450)
.++++.. +..... +. ........++.++|+++.++++.-....|.+|++...... ......+
T Consensus 112 ~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~----l~~~~~~~ 187 (345)
T PF10282_consen 112 SVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGK----LTPVDSIK 187 (345)
T ss_dssp EEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-T----EEEEEEEE
T ss_pred EEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCce----EEEeeccc
Confidence 9999987 433332 21 0123457889999976655666666678999998664411 1011111
Q ss_pred hhcccceEEEEEcCCCCEEEEeeC-CCcEEEEEcC--CCceeeeCCCCCCceeeecccc-C--CccceEEEEEe--CCeE
Q 041325 301 EKHKSAVTALALSTDGTVLYSGAC-DRSILVWERD--QGNYIVDGDDDSGHMVLKGALR-G--HTKAILCLAVV--SNLL 372 (450)
Q Consensus 301 ~~~~~~i~~l~~~~~~~~l~~g~~-dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~-~--~~~~v~~~~~~--~~~l 372 (450)
.......+.++|+|+++++++..+ ++.|.++++. +++... ......+. . .......+.++ +++|
T Consensus 188 ~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~--------~~~~~~~~~~~~~~~~~~~i~ispdg~~l 259 (345)
T PF10282_consen 188 VPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTE--------IQTISTLPEGFTGENAPAEIAISPDGRFL 259 (345)
T ss_dssp CSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEE--------EEEEESCETTSCSSSSEEEEEE-TTSSEE
T ss_pred cccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeE--------EEEeeeccccccccCCceeEEEecCCCEE
Confidence 123456789999999998876654 7789999988 332210 00001110 1 11245667776 4555
Q ss_pred EE-EeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcc-cCCcEEEEEe
Q 041325 373 FS-GSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGS-LDCEIKIWQI 449 (450)
Q Consensus 373 ~s-~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~-~Dg~i~iw~l 449 (450)
++ .-.++.|.+|++... ....+.+..+.........++++|+++ +|+++. .++.|.+|++
T Consensus 260 yvsnr~~~sI~vf~~d~~----~g~l~~~~~~~~~G~~Pr~~~~s~~g~-------------~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 260 YVSNRGSNSISVFDLDPA----TGTLTLVQTVPTGGKFPRHFAFSPDGR-------------YLYVANQDSNTVSVFDI 321 (345)
T ss_dssp EEEECTTTEEEEEEECTT----TTTEEEEEEEEESSSSEEEEEE-TTSS-------------EEEEEETTTTEEEEEEE
T ss_pred EEEeccCCEEEEEEEecC----CCceEEEEEEeCCCCCccEEEEeCCCC-------------EEEEEecCCCeEEEEEE
Confidence 54 446788999999532 223455555554445578999999999 666554 7778999876
No 253
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.32 E-value=2.3e-11 Score=110.10 Aligned_cols=298 Identities=14% Similarity=0.157 Sum_probs=182.4
Q ss_pred CcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCC--CceEEEEEeCC----eEEEEeCC
Q 041325 75 SSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNG--DAVKSLVVLGD----KLFSAHQD 146 (450)
Q Consensus 75 ~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~~~----~l~s~~~d 146 (450)
.+++.+++. .|+-+|.++.-| +.+-|++..-.... ...|. -.|-.+.|++. .-++....
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr------------~l~h~tpw~vad~qws~h~a~~~wiVsts~ 90 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPR------------WLHHITPWQVADVQWSPHPAKPYWIVSTSN 90 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCce------------eeeccCcchhcceecccCCCCceeEEecCc
Confidence 456677777 688888888876 44556554221110 11222 23455566632 23333334
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLL 225 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l 225 (450)
..-.+|++..... +.....+-+|...|+.+-|+| ....+
T Consensus 91 qkaiiwnlA~ss~----------------------------------------~aIef~lhghsraitd~n~~~q~pdVl 130 (1081)
T KOG0309|consen 91 QKAIIWNLAKSSS----------------------------------------NAIEFVLHGHSRAITDINFNPQHPDVL 130 (1081)
T ss_pred chhhhhhhhcCCc----------------------------------------cceEEEEecCccceeccccCCCCCcce
Confidence 5567888765421 112234457999999999999 56789
Q ss_pred EEEeCCCcEEEEecCCCeE-EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcc
Q 041325 226 YSTSWDRTFKIWRTSDFRC-LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHK 304 (450)
Q Consensus 226 ~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 304 (450)
++++-|-.+..||+++... +..+. .-......+.|+..+. .+++.+..+.|++||.+.+. .++..+++|.
T Consensus 131 atcsvdt~vh~wd~rSp~~p~ys~~-~w~s~asqVkwnyk~p-~vlasshg~~i~vwd~r~gs-------~pl~s~K~~v 201 (1081)
T KOG0309|consen 131 ATCSVDTYVHAWDMRSPHRPFYSTS-SWRSAASQVKWNYKDP-NVLASSHGNDIFVWDLRKGS-------TPLCSLKGHV 201 (1081)
T ss_pred eeccccccceeeeccCCCcceeeee-cccccCceeeecccCc-chhhhccCCceEEEeccCCC-------cceEEecccc
Confidence 9999999999999998653 33333 3445668899997555 45555666789999998665 3566777788
Q ss_pred cceEEEEEcC-CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CC--eEEEEeCCC
Q 041325 305 SAVTALALST-DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SN--LLFSGSSDN 379 (450)
Q Consensus 305 ~~i~~l~~~~-~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~--~l~s~~~dg 379 (450)
..|..++|.. ....+++.+.||+|+.||........ ........+|..-.+. ++ ++.---.+.
T Consensus 202 s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~------------~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n 269 (1081)
T KOG0309|consen 202 SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTES------------KRTVTTNFPIWRGRYLPFGEGYCIMPMVGGN 269 (1081)
T ss_pred eeeehHHHhhhhhhhhcccCCCCceeeeccccccccc------------ceeccccCcceeccccccCceeEeccccCCe
Confidence 8899998876 33468889999999999987543110 0011111222222211 11 111111111
Q ss_pred eEEEeeCCCCccc--cCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 380 TIRIWRRSSSVTD--HQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 380 ~v~iwd~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
.+.+++-+..... ......++..+.||...|....|-..+. ..-+.+.....|+|-|.|..+++|-+
T Consensus 270 ~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e---~~~d~d~rdfQLVTWSkD~~lrlWpI 338 (1081)
T KOG0309|consen 270 MVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKE---CDGDYDSRDFQLVTWSKDQTLRLWPI 338 (1081)
T ss_pred eeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhccc---ccCCCCccceeEEEeecCCceEeeec
Confidence 3333322221100 0112578999999999999988876655 11233445668999999999999976
No 254
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.32 E-value=1.1e-11 Score=108.65 Aligned_cols=296 Identities=14% Similarity=0.174 Sum_probs=181.9
Q ss_pred EeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCC
Q 041325 69 LKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQD 146 (450)
Q Consensus 69 l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~d 146 (450)
-.+.||+..|++++. +.+-+++++.|.+|++|.++...-. .........+..|+.+|.++.|..+.-..++.|
T Consensus 729 ~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~-----~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD 803 (1034)
T KOG4190|consen 729 CNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDE-----IGTSACQFTYQAHKKPIHDIGFLADLRSIASCD 803 (1034)
T ss_pred ecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCc-----cccceeeeEhhhccCcccceeeeeccceeeecc
Confidence 334499999999988 6899999999999999998643210 001112345779999999999998875666778
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLY 226 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 226 (450)
|-|.+||.--+.. +..+.... -.+..+.|.|+. +-+..++.
T Consensus 804 ~giHlWDPFigr~----------------Laq~~dap----------------------k~~a~~~ikcl~-nv~~~ili 844 (1034)
T KOG4190|consen 804 GGIHLWDPFIGRL----------------LAQMEDAP----------------------KEGAGGNIKCLE-NVDRHILI 844 (1034)
T ss_pred Ccceeecccccch----------------hHhhhcCc----------------------ccCCCceeEecc-cCcchhee
Confidence 9999999765521 11111000 001122333332 11344555
Q ss_pred EE-eCCCcEEEEecCCCeEEEEeec----ccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHh
Q 041325 227 ST-SWDRTFKIWRTSDFRCLESVKN----AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLE 301 (450)
Q Consensus 227 ~~-~~dg~i~iwd~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 301 (450)
+| +...+|+++|.+..+-...++. .....+.++++.+ .++.++++-.+|.|.+.|.++++ .+..+.
T Consensus 845 AgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~-~GN~lAa~LSnGci~~LDaR~G~--------vINswr 915 (1034)
T KOG4190|consen 845 AGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD-KGNKLAAALSNGCIAILDARNGK--------VINSWR 915 (1034)
T ss_pred eeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc-CcchhhHHhcCCcEEEEecCCCc--------eeccCC
Confidence 54 6789999999998876666552 3346688999987 45589999999999999999887 333333
Q ss_pred hcccceEEEEEcCCCCEEEEeeCCCcEEE-EEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCe
Q 041325 302 KHKSAVTALALSTDGTVLYSGACDRSILV-WERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNT 380 (450)
Q Consensus 302 ~~~~~i~~l~~~~~~~~l~~g~~dg~i~v-wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~ 380 (450)
...-....++ .|..+.|+....|.++.+ |...++...++...+. .+..-+.-.|.-+++......
T Consensus 916 pmecdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kppp-------------epahflqsvgpSLV~a~~Gn~ 981 (1034)
T KOG4190|consen 916 PMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKPPP-------------EPAHFLQSVGPSLVTAQNGNI 981 (1034)
T ss_pred cccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCCCC-------------cchhhhhccCceeEEeccCcE
Confidence 2222222222 245567777777888888 8877665443222221 111122222456667777777
Q ss_pred EEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEE
Q 041325 381 IRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKI 446 (450)
Q Consensus 381 v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~i 446 (450)
+.+|.-... ......... .......+..++++..|-.. -+..|...|.|.+
T Consensus 982 lgVYad~a~-~ha~stitK-iR~d~f~G~lTala~LPLN~-------------afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 982 LGVYADSAE-LHAESTITK-IRPDEFPGTLTALAPLPLNC-------------AFLAGNEHGAIAL 1032 (1034)
T ss_pred EEEEecchh-hhhhhhhcc-ccccccCCccceeeeccccc-------------hhhccCCCCceee
Confidence 788742211 000000001 11122456677888878766 6778888888875
No 255
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.31 E-value=8.8e-10 Score=102.10 Aligned_cols=178 Identities=14% Similarity=0.047 Sum_probs=113.2
Q ss_pred cCCCceEEEEEccCCCEEEEEeCC---CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCC--cEEEEe
Q 041325 208 HHVDTVSALALSSDGSLLYSTSWD---RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADT--KIKVWK 282 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~vwd 282 (450)
.+...+...+|+|+|++|+.+..+ ..|.+||+.+++..... .+...+.++.|+|+++.++++...++ .|.+||
T Consensus 187 ~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~--~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d 264 (417)
T TIGR02800 187 RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA--SFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMD 264 (417)
T ss_pred cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee--cCCCCccceEECCCCCEEEEEECCCCCccEEEEE
Confidence 355568888999999999887644 47999999987654333 34456677899997665666666555 588888
Q ss_pred CcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC-CC--cEEEEEcCCCceeeeCCCCCCceeeeccccCCc
Q 041325 283 KLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC-DR--SILVWERDQGNYIVDGDDDSGHMVLKGALRGHT 359 (450)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (450)
+.++. ...+..+........|+|||+.|+..+. ++ .|+++|+.+++.. .+..+.
T Consensus 265 ~~~~~---------~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~--------------~l~~~~ 321 (417)
T TIGR02800 265 LDGKQ---------LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR--------------RLTFRG 321 (417)
T ss_pred CCCCC---------EEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE--------------EeecCC
Confidence 86654 1112223334456789999998876654 33 5778887765421 122223
Q ss_pred cceEEEEEe--CCeEEEEeCCC---eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 360 KAILCLAVV--SNLLFSGSSDN---TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 360 ~~v~~~~~~--~~~l~s~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
..+....|+ +++++.++.++ .|.+||+.++ ....+... .......|+|+++
T Consensus 322 ~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~---------~~~~l~~~-~~~~~p~~spdg~ 377 (417)
T TIGR02800 322 GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGG---------GERVLTDT-GLDESPSFAPNGR 377 (417)
T ss_pred CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCC---------CeEEccCC-CCCCCceECCCCC
Confidence 344556666 45777777665 7888888753 11222221 2234567899988
No 256
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.31 E-value=1.1e-09 Score=101.45 Aligned_cols=174 Identities=17% Similarity=0.098 Sum_probs=110.4
Q ss_pred cEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCC---CeEEEEEcCCCceeEEeccCcccc
Q 041325 96 EIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQD---HKIRVWKIDNNTSAYYSTSGKLKN 170 (450)
Q Consensus 96 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~~ 170 (450)
.|.++|.+...... +..+...+...+|+|++ |+.+..+ ..|++||+.++....
T Consensus 171 ~l~~~d~~g~~~~~-------------l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------- 228 (417)
T TIGR02800 171 ELQVADYDGANPQT-------------ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------- 228 (417)
T ss_pred eEEEEcCCCCCCEE-------------eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE---------
Confidence 46677765443222 34556678888999887 5555433 479999998763210
Q ss_pred cceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEE-EeCCC--cEEEEecCCCeEEEE
Q 041325 171 KYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYS-TSWDR--TFKIWRTSDFRCLES 247 (450)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg--~i~iwd~~~~~~~~~ 247 (450)
+..+.+.+.+++|+|+++.|+. .+.++ .|.+||+.+++...
T Consensus 229 -----------------------------------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~- 272 (417)
T TIGR02800 229 -----------------------------------VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR- 272 (417)
T ss_pred -----------------------------------eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE-
Confidence 1123334567889999987764 44444 58889998765433
Q ss_pred eecccccceEEEEEeecCCcEEEEEcCCC--cEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC
Q 041325 248 VKNAHDDAINAIVVSKSNDGFVYTGSADT--KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD 325 (450)
Q Consensus 248 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d 325 (450)
+. .+........|+|++..++++...++ .|.++|+..++ ...+..+........|+|+|++|+.++.+
T Consensus 273 l~-~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~---------~~~l~~~~~~~~~~~~spdg~~i~~~~~~ 342 (417)
T TIGR02800 273 LT-NGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE---------VRRLTFRGGYNASPSWSPDGDLIAFVHRE 342 (417)
T ss_pred CC-CCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC---------EEEeecCCCCccCeEECCCCCEEEEEEcc
Confidence 33 23344456788886654555554444 46677765443 11222234556778999999999988877
Q ss_pred C---cEEEEEcCCCc
Q 041325 326 R---SILVWERDQGN 337 (450)
Q Consensus 326 g---~i~vwd~~~~~ 337 (450)
+ .|.+||+.++.
T Consensus 343 ~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 343 GGGFNIAVMDLDGGG 357 (417)
T ss_pred CCceEEEEEeCCCCC
Confidence 6 78999988654
No 257
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=6.8e-10 Score=102.21 Aligned_cols=180 Identities=13% Similarity=0.072 Sum_probs=111.5
Q ss_pred cCCCceEEEEEccCCCEEEEEeCC---CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCc
Q 041325 208 HHVDTVSALALSSDGSLLYSTSWD---RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKL 284 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 284 (450)
.+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++.... . ...+.+....|+|+++.++++.+.+|...+|.+.
T Consensus 193 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l-~-~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 270 (427)
T PRK02889 193 SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVV-A-NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN 270 (427)
T ss_pred cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEe-e-cCCCCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence 355678899999999998877643 3599999998875433 2 2345567889999777566677888887777653
Q ss_pred chhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC-CCcEEEEEcC--CCceeeeCCCCCCceeeeccccCCccc
Q 041325 285 RAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC-DRSILVWERD--QGNYIVDGDDDSGHMVLKGALRGHTKA 361 (450)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~-dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (450)
... . ....+..+........|+|||+.|+..+. +|...+|.+. +++.. . ....+ ..
T Consensus 271 ~~~----~---~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~-----------~-lt~~g--~~ 329 (427)
T PRK02889 271 ADG----S---GLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQ-----------R-VTFTG--SY 329 (427)
T ss_pred CCC----C---CcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceE-----------E-EecCC--CC
Confidence 211 0 12223334444567889999998886654 4566666543 33211 0 01111 11
Q ss_pred eEEEEEe--CCeEEEEeCCC---eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 362 ILCLAVV--SNLLFSGSSDN---TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 362 v~~~~~~--~~~l~s~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
....+|+ +++|+..+.++ .|.+||+.++ . ...+... .......|+||++
T Consensus 330 ~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g--------~-~~~lt~~-~~~~~p~~spdg~ 383 (427)
T PRK02889 330 NTSPRISPDGKLLAYISRVGGAFKLYVQDLATG--------Q-VTALTDT-TRDESPSFAPNGR 383 (427)
T ss_pred cCceEECCCCCEEEEEEccCCcEEEEEEECCCC--------C-eEEccCC-CCccCceECCCCC
Confidence 2234555 56777666554 5999999864 1 1222222 2346789999998
No 258
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=3.5e-09 Score=98.23 Aligned_cols=175 Identities=17% Similarity=0.087 Sum_probs=108.5
Q ss_pred cEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCC---CeEEEEEcCCCceeEEeccCcccc
Q 041325 96 EIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQD---HKIRVWKIDNNTSAYYSTSGKLKN 170 (450)
Q Consensus 96 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d---g~i~iw~~~~~~~~~~~~~~~~~~ 170 (450)
.|.++|.+.+.... +..+...+....|+|++ |+..+.+ ..|.+|++.+++...
T Consensus 180 ~l~~~d~~g~~~~~-------------l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------- 237 (430)
T PRK00178 180 TLQRSDYDGARAVT-------------LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------- 237 (430)
T ss_pred EEEEECCCCCCceE-------------EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE---------
Confidence 37777776554322 34566788999999887 6554433 368889998763211
Q ss_pred cceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEE-EeCCC--cEEEEecCCCeEEEE
Q 041325 171 KYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYS-TSWDR--TFKIWRTSDFRCLES 247 (450)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg--~i~iwd~~~~~~~~~ 247 (450)
+ ....+.+....|+|+|+.|+. ...+| .|.+||+.+++...
T Consensus 238 -----l------------------------------~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~- 281 (430)
T PRK00178 238 -----I------------------------------TNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR- 281 (430)
T ss_pred -----c------------------------------cCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE-
Confidence 0 011223446889999998774 44454 58888998876543
Q ss_pred eecccccceEEEEEeecCCcEEEEEcCCC--cEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC
Q 041325 248 VKNAHDDAINAIVVSKSNDGFVYTGSADT--KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD 325 (450)
Q Consensus 248 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d 325 (450)
+. .+........|+|+++.++++...+| .|.++|+.+++.. .+ ... ........|+|||++|+..+.+
T Consensus 282 lt-~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~------~l-t~~--~~~~~~~~~Spdg~~i~~~~~~ 351 (430)
T PRK00178 282 VT-NHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE------RV-TFV--GNYNARPRLSADGKTLVMVHRQ 351 (430)
T ss_pred cc-cCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE------Ee-ecC--CCCccceEECCCCCEEEEEEcc
Confidence 33 34445667789987665666655555 4666676554411 11 111 1223457899999999877653
Q ss_pred -C--cEEEEEcCCCce
Q 041325 326 -R--SILVWERDQGNY 338 (450)
Q Consensus 326 -g--~i~vwd~~~~~~ 338 (450)
+ .|.+||+.+++.
T Consensus 352 ~~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 352 DGNFHVAAQDLQRGSV 367 (430)
T ss_pred CCceEEEEEECCCCCE
Confidence 3 588899887653
No 259
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.27 E-value=1.8e-08 Score=99.91 Aligned_cols=317 Identities=13% Similarity=0.128 Sum_probs=183.4
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEe----cCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEe
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAW----NRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAH 144 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw----~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~ 144 (450)
...+.|.++.+ +...++.+..+|.|.+. +......... ..-...|.+++|+||. |+.++
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~V-------------G~vd~GI~a~~WSPD~Ella~vT 139 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIV-------------GSVDSGILAASWSPDEELLALVT 139 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEE-------------EEEcCcEEEEEECCCcCEEEEEe
Confidence 34568889988 88889999999999999 5554443322 2234689999999998 77777
Q ss_pred CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEE------------ee-----cceeeee
Q 041325 145 QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQV------------RR-----HKKCTWV 207 (450)
Q Consensus 145 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~-----~~~~~~~ 207 (450)
.++++.+..-+=.-..... +..-......+..+.-+...-+. .. .....+.
T Consensus 140 ~~~~l~~mt~~fd~i~E~~------------l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s 207 (928)
T PF04762_consen 140 GEGNLLLMTRDFDPISEVP------------LDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS 207 (928)
T ss_pred CCCEEEEEeccceEEEEee------------cCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc
Confidence 7888887753322111000 00000001111111111100000 00 0011222
Q ss_pred cCCCceEEEEEccCCCEEEEEeC---C---CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcC---CCcE
Q 041325 208 HHVDTVSALALSSDGSLLYSTSW---D---RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSA---DTKI 278 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~l~~~~~---d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i 278 (450)
+.+.-..++|-.||.++|+.+. . ..+++|+-+ |.....-. .-.+--.+++|.|.+. ++++... ...|
T Consensus 208 -~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE-~v~gLe~~l~WrPsG~-lIA~~q~~~~~~~V 283 (928)
T PF04762_consen 208 -WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE-PVDGLEGALSWRPSGN-LIASSQRLPDRHDV 283 (928)
T ss_pred -cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc-cCCCccCCccCCCCCC-EEEEEEEcCCCcEE
Confidence 4456678999999999998874 2 579999976 65444433 4555567889998554 7776654 3456
Q ss_pred EEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC
Q 041325 279 KVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358 (450)
Q Consensus 279 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (450)
.+|.-..-+ .....-.+......|..++|++|+..|+....|. |.+|...+.... +++.+...
T Consensus 284 vFfErNGLr-----hgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWY-----------LKqei~~~ 346 (928)
T PF04762_consen 284 VFFERNGLR-----HGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWY-----------LKQEIRFS 346 (928)
T ss_pred EEEecCCcE-----eeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEE-----------EEEEEEcc
Confidence 667632211 1111112223456789999999999999987665 999998865432 33333322
Q ss_pred -ccceEEEEEeCC---eEEEEeCCCeEEEeeC----CCCccccCCCceeE------------------------EEecCC
Q 041325 359 -TKAILCLAVVSN---LLFSGSSDNTIRIWRR----SSSVTDHQKGYSCL------------------------AVLEGH 406 (450)
Q Consensus 359 -~~~v~~~~~~~~---~l~s~~~dg~v~iwd~----~~~~~~~~~~~~~~------------------------~~~~~h 406 (450)
...+..+.|++. .|.....+|.+..+++ ..+..........+ ..+. -
T Consensus 347 ~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~ 425 (928)
T PF04762_consen 347 SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-L 425 (928)
T ss_pred CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-C
Confidence 223344777743 5555555555544332 21110000000011 1121 3
Q ss_pred CcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 407 RRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 407 ~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
..+|.+++|++++. .+++-..||.|.+|+.
T Consensus 426 ~~~v~~vaf~~~~~-------------~~avl~~d~~l~~~~~ 455 (928)
T PF04762_consen 426 PSPVNDVAFSPSNS-------------RFAVLTSDGSLSIYEW 455 (928)
T ss_pred CCCcEEEEEeCCCC-------------eEEEEECCCCEEEEEe
Confidence 46899999999988 7899999999999874
No 260
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.26 E-value=4.6e-09 Score=92.61 Aligned_cols=304 Identities=13% Similarity=0.136 Sum_probs=173.0
Q ss_pred ceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEE-----EeCC-
Q 041325 77 YIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFS-----AHQD- 146 (450)
Q Consensus 77 ~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s-----~~~d- 146 (450)
+++..++ +|+++|-+ .+..++|++......+.+ .....+.++.|+|-+ |.+ ...+
T Consensus 36 ~~~v~~~S~~G~lfA~~-~~~~v~i~~~~~~~~~lt--------------~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~ 100 (566)
T KOG2315|consen 36 PCNVFAYSNNGRLFAYS-DNQVVKVFEIATLKVVLC--------------VELKKTYDLLFSPKGNYLLTWEPWAIYGPK 100 (566)
T ss_pred cceeEEEcCCCcEEEEE-cCCeEEEEEccCCcEEEE--------------eccceeeeeeecccccccccccccccccCC
Confidence 3444444 56666655 557899999887763332 222377888888655 222 1222
Q ss_pred ----CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecce---eeeecCCCceEEEEEc
Q 041325 147 ----HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKK---CTWVHHVDTVSALALS 219 (450)
Q Consensus 147 ----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~ 219 (450)
-.+++|++++......... ..... .......+....+....+.+.+..... ..-.-|...|+.+.++
T Consensus 101 ~~~~pn~~v~~vet~~~~s~~q~-k~Q~~-----W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lS 174 (566)
T KOG2315|consen 101 NASNPNVLVYNVETGVQRSQIQK-KMQNG-----WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLS 174 (566)
T ss_pred CCCCCceeeeeeccceehhheeh-hhhcC-----cccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEec
Confidence 3477999988432211111 10000 111111122222222333333332221 1222367789999999
Q ss_pred cCC--CEEEE-----EeCCCcEEEEecCCCeEEEEe--ecccccceEEEEEeecCCcEEEEEcC--C---------CcEE
Q 041325 220 SDG--SLLYS-----TSWDRTFKIWRTSDFRCLESV--KNAHDDAINAIVVSKSNDGFVYTGSA--D---------TKIK 279 (450)
Q Consensus 220 ~~~--~~l~~-----~~~dg~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~--d---------g~i~ 279 (450)
|.+ ..+++ .+.-+.++||.......-..+ +.-....-..+.|++-+..+|+.++. | ..++
T Consensus 175 pgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Ly 254 (566)
T KOG2315|consen 175 PGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLY 254 (566)
T ss_pred CCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEE
Confidence 863 33433 345568999988632221111 11122333456677655555444432 2 3677
Q ss_pred EEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEE--eeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccC
Q 041325 280 VWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYS--GACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG 357 (450)
Q Consensus 280 vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~--g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (450)
++++.... ..-.+ ...++|.++.|+|+++-+++ |-.--.+.|||++- +.+ +.-
T Consensus 255 ll~t~g~s--------~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v---------------~df 309 (566)
T KOG2315|consen 255 LLATQGES--------VSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPV---------------FDF 309 (566)
T ss_pred EEEecCce--------EEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEe---------------EeC
Confidence 77765222 11122 24789999999999987665 45567899999883 222 222
Q ss_pred CccceEEEEEe--CCeEEEEeCC---CeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCce
Q 041325 358 HTKAILCLAVV--SNLLFSGSSD---NTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTS 432 (450)
Q Consensus 358 ~~~~v~~~~~~--~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~ 432 (450)
-.++-.++-|+ +++|+.++-+ |.+.|||+.+ .+++..+..-. -+-+.|+|||+
T Consensus 310 ~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n--------~K~i~~~~a~~--tt~~eW~PdGe------------ 367 (566)
T KOG2315|consen 310 PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN--------RKLIAKFKAAN--TTVFEWSPDGE------------ 367 (566)
T ss_pred CCCCccceEECCCCCEEEEeecCCCCCceEEEeccc--------hhhccccccCC--ceEEEEcCCCc------------
Confidence 34556677777 5566666554 7899999986 36666665433 45679999999
Q ss_pred EEEEEcc------cCCcEEEEEe
Q 041325 433 FLVYSGS------LDCEIKIWQI 449 (450)
Q Consensus 433 ~~l~s~~------~Dg~i~iw~l 449 (450)
+++|+. .|+.++||+.
T Consensus 368 -~flTATTaPRlrvdNg~Kiwhy 389 (566)
T KOG2315|consen 368 -YFLTATTAPRLRVDNGIKIWHY 389 (566)
T ss_pred -EEEEEeccccEEecCCeEEEEe
Confidence 777776 3788999985
No 261
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=1.5e-11 Score=107.75 Aligned_cols=216 Identities=17% Similarity=0.283 Sum_probs=144.4
Q ss_pred eeEEecCCCceEEEEEeCC--eEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEE
Q 041325 120 NVVATGNGDAVKSLVVLGD--KLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQ 197 (450)
Q Consensus 120 ~~~~~~h~~~v~~l~~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (450)
...+.||...|..++--.+ .+++++.|++|++|.++.... .+
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD---------------~~--------------------- 771 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGD---------------EI--------------------- 771 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccC---------------cc---------------------
Confidence 3457899999999886533 399999999999999986521 00
Q ss_pred EeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeec-ccccceEEEEEeec-CCcEE-EEEcC
Q 041325 198 VRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKN-AHDDAINAIVVSKS-NDGFV-YTGSA 274 (450)
Q Consensus 198 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~~l-~~~~~ 274 (450)
-......++..|..+|.++.|-.+.++++++ ||.|++||.--++.+..... ...+.+..+...+. ...++ +.++.
T Consensus 772 ~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsa 849 (1034)
T KOG4190|consen 772 GTSACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSA 849 (1034)
T ss_pred ccceeeeEhhhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccc
Confidence 0011233556799999999999988888765 79999999988887764432 22334444444443 23344 44478
Q ss_pred CCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeecc
Q 041325 275 DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGA 354 (450)
Q Consensus 275 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 354 (450)
..+|+++|.+..+... .+ .+..-.+.+..+.+++.-+.|+.++++-.+|.|.+.|.++|+.+. .
T Consensus 850 eSTVKl~DaRsce~~~--E~-kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vIN-------------s 913 (1034)
T KOG4190|consen 850 ESTVKLFDARSCEWTC--EL-KVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVIN-------------S 913 (1034)
T ss_pred hhhheeeeccccccee--eE-EeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceec-------------c
Confidence 8999999998766211 00 111223445678999999999999999999999999999998662 2
Q ss_pred ccCCccceEEEEE-eCCeEEEEeCCCeEEE-eeCCCC
Q 041325 355 LRGHTKAILCLAV-VSNLLFSGSSDNTIRI-WRRSSS 389 (450)
Q Consensus 355 ~~~~~~~v~~~~~-~~~~l~s~~~dg~v~i-wd~~~~ 389 (450)
+.........++- +.+.++....|.++.+ |..-.+
T Consensus 914 wrpmecdllqlaapsdq~L~~saldHslaVnWhaldg 950 (1034)
T KOG4190|consen 914 WRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDG 950 (1034)
T ss_pred CCcccchhhhhcCchhHHHHhhcccceeEeeehhcCC
Confidence 2222222233332 2346666667777777 765543
No 262
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.25 E-value=1.3e-08 Score=88.15 Aligned_cols=170 Identities=12% Similarity=0.098 Sum_probs=126.1
Q ss_pred eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe--CCeEEEEeCCC-eEEEEEcCCCcee
Q 041325 84 AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL--GDKLFSAHQDH-KIRVWKIDNNTSA 160 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~~~dg-~i~iw~~~~~~~~ 160 (450)
+|++++..|. |...|.+...+-.++. +|.+.|.-..+. ++.++.|..|| .+-++|.++++..
T Consensus 331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv--------------~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k 395 (668)
T COG4946 331 NGDYIALVSR-GKAFIMRPWDGYSIQV--------------GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK 395 (668)
T ss_pred CCcEEEEEec-CcEEEECCCCCeeEEc--------------CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE
Confidence 7999999987 8888877666654444 777888887776 44599999999 8999999988421
Q ss_pred EEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 041325 161 YYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTS 240 (450)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 240 (450)
.....-+.|.++..+++|+.++.+.....|.+.|+.
T Consensus 396 --------------------------------------------r~e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 396 --------------------------------------------RIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID 431 (668)
T ss_pred --------------------------------------------EeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence 112344579999999999999999989999999999
Q ss_pred CCeEEEEeecccccceEEEEEeecCCcEEEEEcCCC----cEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCC
Q 041325 241 DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADT----KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDG 316 (450)
Q Consensus 241 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 316 (450)
+++....-+ ...+-|+.+.|+|. ..+++-+--+| .|+++|+..++ ... .....+.=.+-+|.||+
T Consensus 432 ngnv~~idk-S~~~lItdf~~~~n-sr~iAYafP~gy~tq~Iklydm~~~K--------iy~-vTT~ta~DfsPaFD~d~ 500 (668)
T COG4946 432 NGNVRLIDK-SEYGLITDFDWHPN-SRWIAYAFPEGYYTQSIKLYDMDGGK--------IYD-VTTPTAYDFSPAFDPDG 500 (668)
T ss_pred CCCeeEecc-cccceeEEEEEcCC-ceeEEEecCcceeeeeEEEEecCCCe--------EEE-ecCCcccccCcccCCCC
Confidence 987654444 67789999999984 44788776655 68999997765 111 11122223456788999
Q ss_pred CEEEEee
Q 041325 317 TVLYSGA 323 (450)
Q Consensus 317 ~~l~~g~ 323 (450)
++|.--+
T Consensus 501 ryLYfLs 507 (668)
T COG4946 501 RYLYFLS 507 (668)
T ss_pred cEEEEEe
Confidence 9877654
No 263
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.24 E-value=1.6e-09 Score=98.26 Aligned_cols=279 Identities=9% Similarity=0.059 Sum_probs=174.9
Q ss_pred CcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeec---CCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCC
Q 041325 75 SSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITST---DVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDH 147 (450)
Q Consensus 75 ~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~---~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg 147 (450)
.....|++| ...++|.|+.||.++|-.+.+...-..... .....-...+.||.+.|.-+.|+.+. |-+...+|
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 456789999 589999999999999998876442211111 11112233578999999999999666 88999999
Q ss_pred eEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEE
Q 041325 148 KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYS 227 (450)
Q Consensus 148 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 227 (450)
.|.+|-+-.+.- ...+ .-....+.|.+++|+.+|..++.
T Consensus 94 lIiVWmlykgsW----------------~EEM-------------------------iNnRnKSvV~SmsWn~dG~kIcI 132 (1189)
T KOG2041|consen 94 LIIVWMLYKGSW----------------CEEM-------------------------INNRNKSVVVSMSWNLDGTKICI 132 (1189)
T ss_pred eEEEEeeecccH----------------HHHH-------------------------hhCcCccEEEEEEEcCCCcEEEE
Confidence 999999866521 0000 00123457899999999999999
Q ss_pred EeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhh-cccc--chhhhhHhhcc
Q 041325 228 TSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQ-VNKK--HSLVQTLEKHK 304 (450)
Q Consensus 228 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~~~--~~~~~~~~~~~ 304 (450)
...||.|.+=.++..+.-..- -.......+.|+++.. .++.+-.+|.+.+||....-.. .... ......+....
T Consensus 133 vYeDGavIVGsvdGNRIwgKe--Lkg~~l~hv~ws~D~~-~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~ 209 (1189)
T KOG2041|consen 133 VYEDGAVIVGSVDGNRIWGKE--LKGQLLAHVLWSEDLE-QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFP 209 (1189)
T ss_pred EEccCCEEEEeeccceecchh--cchheccceeecccHH-HHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCC
Confidence 999999988777644322111 1122344678887444 6667778899999997543200 0000 00000111112
Q ss_pred cceEEEEEc--------CCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEE
Q 041325 305 SAVTALALS--------TDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFS 374 (450)
Q Consensus 305 ~~i~~l~~~--------~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s 374 (450)
..|..+.|. ||...|+++..+|.+.+..-.+.... .+....-.+....|+. ..|+.
T Consensus 210 ~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P--------------vv~dtgm~~vgakWnh~G~vLAv 275 (1189)
T KOG2041|consen 210 TKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP--------------VVVDTGMKIVGAKWNHNGAVLAV 275 (1189)
T ss_pred ccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC--------------eEEecccEeecceecCCCcEEEE
Confidence 235556654 47778999999999888754432110 1111123456677763 47777
Q ss_pred EeCC---------CeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 375 GSSD---------NTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 375 ~~~d---------g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
++.| +.|.+|..- ...+..++-....|++++|-..+-
T Consensus 276 cG~~~da~~~~d~n~v~Fysp~---------G~i~gtlkvpg~~It~lsWEg~gL 321 (1189)
T KOG2041|consen 276 CGNDSDADEPTDSNKVHFYSPY---------GHIVGTLKVPGSCITGLSWEGTGL 321 (1189)
T ss_pred ccCcccccCccccceEEEeccc---------hhheEEEecCCceeeeeEEcCCce
Confidence 7654 345555433 256677777788899999976665
No 264
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.21 E-value=7e-09 Score=95.86 Aligned_cols=216 Identities=14% Similarity=0.071 Sum_probs=121.3
Q ss_pred EecCCCceEEEEEeCCe--EEEEe-CCC--eEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEE
Q 041325 123 ATGNGDAVKSLVVLGDK--LFSAH-QDH--KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQ 197 (450)
Q Consensus 123 ~~~h~~~v~~l~~~~~~--l~s~~-~dg--~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (450)
+..+...+....|+||+ |+..+ .++ .|.+||+.+++.. .+..
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~--------------~lt~------------------- 259 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVRE--------------KVTS------------------- 259 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeE--------------EecC-------------------
Confidence 34556688899999887 55443 333 5888888776321 1110
Q ss_pred EeecceeeeecCCCceEEEEEccCCCEEEE-EeCCCc--EEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcC
Q 041325 198 VRRHKKCTWVHHVDTVSALALSSDGSLLYS-TSWDRT--FKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSA 274 (450)
Q Consensus 198 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 274 (450)
..+.....+|+|||+.|+. .+.+|. |.++|+.+++.. .+. .+........|+|+++.++++...
T Consensus 260 -----------~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~-~lt-~~~~~~~~p~wSpDG~~I~f~s~~ 326 (448)
T PRK04792 260 -----------FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALT-RIT-RHRAIDTEPSWHPDGKSLIFTSER 326 (448)
T ss_pred -----------CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE-ECc-cCCCCccceEECCCCCEEEEEECC
Confidence 1112345789999997765 455664 777888877643 333 344456778999976655666655
Q ss_pred CCc--EEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC-C--cEEEEEcCCCceeeeCCCCCCce
Q 041325 275 DTK--IKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD-R--SILVWERDQGNYIVDGDDDSGHM 349 (450)
Q Consensus 275 dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d-g--~i~vwd~~~~~~~~~~~~~~~~~ 349 (450)
++. |.++|+.+++.. .+ .+ ........+|+|||++|+..+.+ + .|.++|+.+++...
T Consensus 327 ~g~~~Iy~~dl~~g~~~------~L-t~--~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~--------- 388 (448)
T PRK04792 327 GGKPQIYRVNLASGKVS------RL-TF--EGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV--------- 388 (448)
T ss_pred CCCceEEEEECCCCCEE------EE-ec--CCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE---------
Confidence 554 555566544310 11 11 12223456899999998876553 3 45667777664321
Q ss_pred eeeccccCCccceEEEEEe--CCeEE-EEeCCCe--EEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEe
Q 041325 350 VLKGALRGHTKAILCLAVV--SNLLF-SGSSDNT--IRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVV 417 (450)
Q Consensus 350 ~~~~~~~~~~~~v~~~~~~--~~~l~-s~~~dg~--v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 417 (450)
+.... ......|+ ++.|+ +...+|. +++++... .....+..+.+.+...+|+|
T Consensus 389 -----lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G---------~~~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 389 -----LTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG---------RFKARLPAGQGEVKSPAWSP 446 (448)
T ss_pred -----ccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEECCC---------CceEECcCCCCCcCCCccCC
Confidence 11000 01122454 44444 4444443 66666642 33444545555667777776
No 265
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.14 E-value=8.4e-08 Score=87.47 Aligned_cols=281 Identities=13% Similarity=0.150 Sum_probs=151.4
Q ss_pred CCccceeeeEEeecCCCcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC
Q 041325 59 AASEHQCSATLKVKGNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD 138 (450)
Q Consensus 59 ~~~~~~~~~~l~~~~h~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 138 (450)
...+++.+-..++. .........++..++.++.+|.+..+|.++++......... .........++
T Consensus 81 d~~tG~~~W~~~~~--~~~~~~p~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~------------~~~~~p~v~~~ 146 (377)
T TIGR03300 81 DAETGKRLWRVDLD--ERLSGGVGADGGLVFVGTEKGEVIALDAEDGKELWRAKLSS------------EVLSPPLVANG 146 (377)
T ss_pred EccCCcEeeeecCC--CCcccceEEcCCEEEEEcCCCEEEEEECCCCcEeeeeccCc------------eeecCCEEECC
Confidence 33445554444422 22222344467888889999999999999998766522211 01111223455
Q ss_pred eEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecc--eeeeec-------C
Q 041325 139 KLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHK--KCTWVH-------H 209 (450)
Q Consensus 139 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-------~ 209 (450)
.++.++.+|.|..||.++++............. ..........++ .......++.+...... ...+.. .
T Consensus 147 ~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~-~~~~~sp~~~~~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~ 224 (377)
T TIGR03300 147 LVVVRTNDGRLTALDAATGERLWTYSRVTPALT-LRGSASPVIADG-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGR 224 (377)
T ss_pred EEEEECCCCeEEEEEcCCCceeeEEccCCCcee-ecCCCCCEEECC-EEEEECCCCEEEEEEccCCCEeeeeccccCCCC
Confidence 678888899999999998876544332211000 000000000011 11111111111111100 000000 0
Q ss_pred C--CceEEEEEcc--CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc
Q 041325 210 V--DTVSALALSS--DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR 285 (450)
Q Consensus 210 ~--~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 285 (450)
. .....+.-+| .+..++.++.+|.+..||..+++.+.... .. ....... .++.+++++.+|.+..+|..+
T Consensus 225 ~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~--~~-~~~~p~~---~~~~vyv~~~~G~l~~~d~~t 298 (377)
T TIGR03300 225 TELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD--AS-SYQGPAV---DDNRLYVTDADGVVVALDRRS 298 (377)
T ss_pred CchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec--cC-CccCceE---eCCEEEEECCCCeEEEEECCC
Confidence 0 0000011111 35578888889999999999998776554 11 1222233 245788888999999999987
Q ss_pred hhhhccccchhhhhHhhc-ccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccc-eE
Q 041325 286 AALQVNKKHSLVQTLEKH-KSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA-IL 363 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~-~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~ 363 (450)
++. +...... .....+... .+..|++++.+|.|+++|..+++.+. .+..+... ..
T Consensus 299 G~~--------~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~-------------~~~~~~~~~~~ 355 (377)
T TIGR03300 299 GSE--------LWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVA-------------RLKTDGSGIAS 355 (377)
T ss_pred CcE--------EEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEE-------------EEEcCCCcccc
Confidence 761 1111111 111122222 46789999999999999999988663 22222322 23
Q ss_pred EEEEeCCeEEEEeCCCeEEEe
Q 041325 364 CLAVVSNLLFSGSSDNTIRIW 384 (450)
Q Consensus 364 ~~~~~~~~l~s~~~dg~v~iw 384 (450)
+..+.++.|+.++.||.|+.|
T Consensus 356 sp~~~~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 356 PPVVVGDGLLVQTRDGDLYAF 376 (377)
T ss_pred CCEEECCEEEEEeCCceEEEe
Confidence 344567789999999998775
No 266
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.14 E-value=1.5e-08 Score=94.04 Aligned_cols=178 Identities=13% Similarity=0.074 Sum_probs=107.6
Q ss_pred cCCCceEEEEEccCCCEEEEEeCC---CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCC--cEEEEe
Q 041325 208 HHVDTVSALALSSDGSLLYSTSWD---RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADT--KIKVWK 282 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~vwd 282 (450)
.+...+....|+|+|+.|+..+.+ ..|.+||+.+++..... ...+.+....|+|+++.++++...+| .|.+||
T Consensus 196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~--~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d 273 (430)
T PRK00178 196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQIT--NFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMD 273 (430)
T ss_pred cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEcc--CCCCCcCCeEECCCCCEEEEEEccCCCceEEEEE
Confidence 355678899999999998876643 36899999887654332 23344567899997665555666665 577888
Q ss_pred CcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC-CC--cEEEEEcCCCceeeeCCCCCCceeeeccccCCc
Q 041325 283 KLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC-DR--SILVWERDQGNYIVDGDDDSGHMVLKGALRGHT 359 (450)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (450)
+.+++. ..+..+........|+|||+.|+..+. +| .|+++|+.+++... . ...+.
T Consensus 274 ~~~~~~---------~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~----------l--t~~~~- 331 (430)
T PRK00178 274 LASRQL---------SRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER----------V--TFVGN- 331 (430)
T ss_pred CCCCCe---------EEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE----------e--ecCCC-
Confidence 876541 122233445567889999998876654 33 57777877665320 0 11111
Q ss_pred cceEEEEEe--CCeEEEEeC-CC--eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 360 KAILCLAVV--SNLLFSGSS-DN--TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 360 ~~v~~~~~~--~~~l~s~~~-dg--~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
......|+ ++.|+..+. ++ .|.+||+.++. ... +. +........|+|+++
T Consensus 332 -~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~------~~~---lt-~~~~~~~p~~spdg~ 386 (430)
T PRK00178 332 -YNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGS------VRI---LT-DTSLDESPSVAPNGT 386 (430)
T ss_pred -CccceEECCCCCEEEEEEccCCceEEEEEECCCCC------EEE---cc-CCCCCCCceECCCCC
Confidence 11233454 556655543 33 47888887641 122 21 111223458999988
No 267
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.14 E-value=3.1e-07 Score=82.26 Aligned_cols=262 Identities=18% Similarity=0.224 Sum_probs=151.4
Q ss_pred cceEEEEE--eCCEEEEeeC----CCcEEEecCCCC--CceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEe-
Q 041325 76 SYIPSLAI--AGKLLYGGSS----NGEIRAWNRDPN--NYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAH- 144 (450)
Q Consensus 76 ~~v~~~~~--d~~~l~tgs~----dg~v~vw~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~- 144 (450)
.....+++ ++++|.+... +|.|..|++... ++..... ..........++++++. |+++.
T Consensus 37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~----------~~~~g~~p~~i~~~~~g~~l~vany 106 (345)
T PF10282_consen 37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNS----------VPSGGSSPCHIAVDPDGRFLYVANY 106 (345)
T ss_dssp SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEE----------EEESSSCEEEEEECTTSSEEEEEET
T ss_pred CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeee----------eccCCCCcEEEEEecCCCEEEEEEc
Confidence 33445556 7888888766 578988887764 3332211 11133455678887666 55554
Q ss_pred CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCE
Q 041325 145 QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSL 224 (450)
Q Consensus 145 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 224 (450)
.+|.|.++++............. .....-+.. -........++.++|++++
T Consensus 107 ~~g~v~v~~l~~~g~l~~~~~~~------~~~g~g~~~-----------------------~rq~~~h~H~v~~~pdg~~ 157 (345)
T PF10282_consen 107 GGGSVSVFPLDDDGSLGEVVQTV------RHEGSGPNP-----------------------DRQEGPHPHQVVFSPDGRF 157 (345)
T ss_dssp TTTEEEEEEECTTSEEEEEEEEE------ESEEEESST-----------------------TTTSSTCEEEEEE-TTSSE
T ss_pred cCCeEEEEEccCCcccceeeeec------ccCCCCCcc-----------------------cccccccceeEEECCCCCE
Confidence 58999999998742111000000 000000000 0012335788999999998
Q ss_pred EEEEe-CCCcEEEEecCCCe--E--EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc--hhhhccccchhh
Q 041325 225 LYSTS-WDRTFKIWRTSDFR--C--LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR--AALQVNKKHSLV 297 (450)
Q Consensus 225 l~~~~-~dg~i~iwd~~~~~--~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~~ 297 (450)
+++.. ....|.+|++.... . ...+..........+.|+|++....++...++.|.++++.. +...........
T Consensus 158 v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~ 237 (345)
T PF10282_consen 158 VYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTL 237 (345)
T ss_dssp EEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESC
T ss_pred EEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeec
Confidence 88765 34579999997654 2 23334355667899999997776677888899999999872 221110111111
Q ss_pred hhHhhcccceEEEEEcCCCCEEEEeeC-CCcEEEEEcCC--CceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeE
Q 041325 298 QTLEKHKSAVTALALSTDGTVLYSGAC-DRSILVWERDQ--GNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLL 372 (450)
Q Consensus 298 ~~~~~~~~~i~~l~~~~~~~~l~~g~~-dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 372 (450)
..-.........|+++|||++|+++.. ++.|.+|++.. ++. ...............++++ +++|
T Consensus 238 ~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l-----------~~~~~~~~~G~~Pr~~~~s~~g~~l 306 (345)
T PF10282_consen 238 PEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTL-----------TLVQTVPTGGKFPRHFAFSPDGRYL 306 (345)
T ss_dssp ETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTE-----------EEEEEEEESSSSEEEEEE-TTSSEE
T ss_pred cccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCce-----------EEEEEEeCCCCCccEEEEeCCCCEE
Confidence 110111236788999999999888664 66899999942 332 1222332223335777775 5666
Q ss_pred EEEe-CCCeEEEeeCC
Q 041325 373 FSGS-SDNTIRIWRRS 387 (450)
Q Consensus 373 ~s~~-~dg~v~iwd~~ 387 (450)
+++. .++.|.+|++.
T Consensus 307 ~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 307 YVANQDSNTVSVFDID 322 (345)
T ss_dssp EEEETTTTEEEEEEEE
T ss_pred EEEecCCCeEEEEEEe
Confidence 6655 67789999875
No 268
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.12 E-value=2.6e-08 Score=79.87 Aligned_cols=196 Identities=17% Similarity=0.101 Sum_probs=132.9
Q ss_pred eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEE---EeCCeEEEEeCCCeEEEEEcCCCcee
Q 041325 84 AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLV---VLGDKLFSAHQDHKIRVWKIDNNTSA 160 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~---~~~~~l~s~~~dg~i~iw~~~~~~~~ 160 (450)
...+||.|+.-|...+|...+.+.... ....|...|+-+. -+.-.+..++.|.++++.+++.+...
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~-----------~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~ 151 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLY-----------QCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK 151 (344)
T ss_pred cccEEEeccccceeeeecccCccccee-----------eecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc
Confidence 567999999999999999886653222 1222333222221 11222788889999999998866321
Q ss_pred EEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCC--ceEEEEEccCCCEEEEEeCCCcEEEEe
Q 041325 161 YYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVD--TVSALALSSDGSLLYSTSWDRTFKIWR 238 (450)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd 238 (450)
..-|.. .+.+++++++++++++.+....|..|.
T Consensus 152 ---------------------------------------------~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~ 186 (344)
T KOG4532|consen 152 ---------------------------------------------FAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYA 186 (344)
T ss_pred ---------------------------------------------ceeeccccceeeeEEcCCCceEEEecCCCcceEEE
Confidence 011222 378899999999999999999999998
Q ss_pred cCCC-eEEEE-eecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCC
Q 041325 239 TSDF-RCLES-VKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDG 316 (450)
Q Consensus 239 ~~~~-~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 316 (450)
+... +.+.. ......+.-.+..|+. .+..++++..||.+.|||++.....+.. ....-..|++.+..+.|++.|
T Consensus 187 id~~sey~~~~~~a~t~D~gF~~S~s~-~~~~FAv~~Qdg~~~I~DVR~~~tpm~~---~sstrp~hnGa~R~c~Fsl~g 262 (344)
T KOG4532|consen 187 IDDESEYIENIYEAPTSDHGFYNSFSE-NDLQFAVVFQDGTCAIYDVRNMATPMAE---ISSTRPHHNGAFRVCRFSLYG 262 (344)
T ss_pred eCCccceeeeeEecccCCCceeeeecc-CcceEEEEecCCcEEEEEecccccchhh---hcccCCCCCCceEEEEecCCC
Confidence 8653 22222 2224455667778886 4447999999999999999876522111 122233488999999999855
Q ss_pred --CEEEEeeCCCcEEEEEcCCCcee
Q 041325 317 --TVLYSGACDRSILVWERDQGNYI 339 (450)
Q Consensus 317 --~~l~~g~~dg~i~vwd~~~~~~~ 339 (450)
.+|+..-.-+.+++.|+++++..
T Consensus 263 ~lDLLf~sEhfs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 263 LLDLLFISEHFSRVHVVDTRNYVNH 287 (344)
T ss_pred cceEEEEecCcceEEEEEcccCcee
Confidence 35665556688999999987643
No 269
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.11 E-value=1.3e-07 Score=95.91 Aligned_cols=283 Identities=13% Similarity=0.113 Sum_probs=154.9
Q ss_pred EEEE---eCCEEEEeeCCCcEEEecCCCCCceeeeecCC-CCcceeEEecCCCceEEEEEeCCe--EEEEe-CCCeEEEE
Q 041325 80 SLAI---AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDV-GDHANVVATGNGDAVKSLVVLGDK--LFSAH-QDHKIRVW 152 (450)
Q Consensus 80 ~~~~---d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~-~dg~i~iw 152 (450)
.+++ +++++++-+.++.|++||.............. +......-...-.....|++.++. |+.+. .++.|+++
T Consensus 572 gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~i 651 (1057)
T PLN02919 572 KLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREI 651 (1057)
T ss_pred eEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEE
Confidence 4555 36677777888999999986543222211000 000000001122345778887543 55544 45779999
Q ss_pred EcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEEEEEeCC
Q 041325 153 KIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLYSTSWD 231 (450)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~d 231 (450)
|..++....+...+.... ... .+. .... ..-.....++++| ++.++++...+
T Consensus 652 d~~~~~V~tlag~G~~g~-------~~~-----------gg~------~~~~---~~ln~P~gVa~dp~~g~LyVad~~~ 704 (1057)
T PLN02919 652 DFVNETVRTLAGNGTKGS-------DYQ-----------GGK------KGTS---QVLNSPWDVCFEPVNEKVYIAMAGQ 704 (1057)
T ss_pred ecCCCEEEEEeccCcccC-------CCC-----------CCh------hhhH---hhcCCCeEEEEecCCCeEEEEECCC
Confidence 987763321111110000 000 000 0000 0011235789999 56667777788
Q ss_pred CcEEEEecCCCeEEEEeec-------------ccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccc----
Q 041325 232 RTFKIWRTSDFRCLESVKN-------------AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKH---- 294 (450)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---- 294 (450)
+.|++||..++........ ........|+++|+++.++++-..++.|++||+.++........
T Consensus 705 ~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~ 784 (1057)
T PLN02919 705 HQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTF 784 (1057)
T ss_pred CeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccccc
Confidence 9999999987654321110 01124567899986665777888889999999876431100000
Q ss_pred -hhhhhHh--------hcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEE
Q 041325 295 -SLVQTLE--------KHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL 365 (450)
Q Consensus 295 -~~~~~~~--------~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 365 (450)
.....+. ..-.....++++++|+++++-..++.|++||..++..............--....+.-.....+
T Consensus 785 ~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GI 864 (1057)
T PLN02919 785 SDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGL 864 (1057)
T ss_pred CcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEE
Confidence 0000000 0112346899999999888888999999999987754321111000000000111222345667
Q ss_pred EEe--CCeEEEEeCCCeEEEeeCCCC
Q 041325 366 AVV--SNLLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 366 ~~~--~~~l~s~~~dg~v~iwd~~~~ 389 (450)
+++ ++++++-+.++.|++||+.++
T Consensus 865 avd~dG~lyVaDt~Nn~Irvid~~~~ 890 (1057)
T PLN02919 865 ALGENGRLFVADTNNSLIRYLDLNKG 890 (1057)
T ss_pred EEeCCCCEEEEECCCCEEEEEECCCC
Confidence 776 558888889999999999875
No 270
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.10 E-value=5.6e-08 Score=89.21 Aligned_cols=179 Identities=12% Similarity=0.011 Sum_probs=100.2
Q ss_pred ceEEEEEccCCCEEEEEeC-----CCcEEEEecCCC--eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCc
Q 041325 212 TVSALALSSDGSLLYSTSW-----DRTFKIWRTSDF--RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKL 284 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 284 (450)
.....+|+|||+.|+..+. +..+.+|++..+ .....+............|+|++..++++...+|...+|.+.
T Consensus 232 ~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~ 311 (428)
T PRK01029 232 NQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQ 311 (428)
T ss_pred CccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEE
Confidence 3445789999998886653 223455777653 122233312223446789999776556666667766666442
Q ss_pred chhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC---CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccc
Q 041325 285 RAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD---RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA 361 (450)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (450)
... .. .....+......+....|+|||+.|+..+.+ ..|.+||+.+++.. .+......
T Consensus 312 ~~~----~g-~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~--------------~Lt~~~~~ 372 (428)
T PRK01029 312 IDP----EG-QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDY--------------QLTTSPEN 372 (428)
T ss_pred Ccc----cc-cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeE--------------EccCCCCC
Confidence 110 00 0112222233456788999999988876543 46999999877643 11111223
Q ss_pred eEEEEEeC--CeEE-EEeC--CCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEec
Q 041325 362 ILCLAVVS--NLLF-SGSS--DNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVD 418 (450)
Q Consensus 362 v~~~~~~~--~~l~-s~~~--dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 418 (450)
+....|++ +.|+ ++.. ...|.++|+..+ + ...+....+.+...+|+|.
T Consensus 373 ~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g--------~-~~~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 373 KESPSWAIDSLHLVYSAGNSNESELYLISLITK--------K-TRKIVIGSGEKRFPSWGAF 425 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCceEEEEECCCC--------C-EEEeecCCCcccCceecCC
Confidence 45567764 4444 3333 346888888753 1 1222223445566777764
No 271
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.08 E-value=2e-07 Score=81.60 Aligned_cols=309 Identities=9% Similarity=0.107 Sum_probs=179.2
Q ss_pred CCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCC--
Q 041325 74 NSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDH-- 147 (450)
Q Consensus 74 h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg-- 147 (450)
-.-++..+++ .|.+|++.... .|.+|+-.....+.. .-| ..|..+.|+|+. |.+-+..+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~-------------~~~-~~V~~~~fSP~~kYL~tw~~~pi~ 95 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVR-------------FRH-PDVKYLDFSPNEKYLVTWSREPII 95 (561)
T ss_pred cCcchhheeecCcchheehhhcc-ceEEccccchhheee-------------eec-CCceecccCcccceeeeeccCCcc
Confidence 4556777777 68999988774 589998766552222 123 478888888776 66654433
Q ss_pred -------------eEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeec------
Q 041325 148 -------------KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVH------ 208 (450)
Q Consensus 148 -------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 208 (450)
.+.+||+.++..+............+ .+......+...... .++.+.+... ...+..
T Consensus 96 ~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~W-p~~k~s~~D~y~ARv--v~~sl~i~e~-t~n~~~~p~~~l 171 (561)
T COG5354 96 EPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGW-PVLKFSIDDKYVARV--VGSSLYIHEI-TDNIEEHPFKNL 171 (561)
T ss_pred ChhhccCCccccCceeEEeccCceeEeeccccCCccccc-ceeeeeecchhhhhh--ccCeEEEEec-CCccccCchhhc
Confidence 48999999996654333222211111 011111111111111 1222222221 000101
Q ss_pred CCCceEEEEEccCC--CEEEE-----EeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEc--------
Q 041325 209 HVDTVSALALSSDG--SLLYS-----TSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGS-------- 273 (450)
Q Consensus 209 ~~~~v~~~~~~~~~--~~l~~-----~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-------- 273 (450)
....+....|+|.+ ..|+. .+..+.+++|.+..+..+.... -.+..-..+.|++.++.+++-.-
T Consensus 172 r~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~-lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKs 250 (561)
T COG5354 172 RPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKN-LFKVSGVQLKWQVLGKYLLVLVMTHTKSNKS 250 (561)
T ss_pred cccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeee-eEeecccEEEEecCCceEEEEEEEeeecccc
Confidence 13567888899853 33443 4568899999998776665443 23333455677765554322211
Q ss_pred --CCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEee--CCCcEEEEEcCCCceeeeCCCCCCce
Q 041325 274 --ADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA--CDRSILVWERDQGNYIVDGDDDSGHM 349 (450)
Q Consensus 274 --~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~~ 349 (450)
....+.+++++... +.......++|...+|.|.++.+++.+ .+-.+.++|++.. ..
T Consensus 251 yfgesnLyl~~~~e~~---------i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~---------- 310 (561)
T COG5354 251 YFGESNLYLLRITERS---------IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LR---------- 310 (561)
T ss_pred eeccceEEEEeecccc---------cceeccccccceeeeecccCCceeEEecccccceeecccccc-eE----------
Confidence 13467888876332 222225678999999999888776654 6788999999865 11
Q ss_pred eeeccccCCccceEEEEEe--CCeEEEEeCC---CeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCC
Q 041325 350 VLKGALRGHTKAILCLAVV--SNLLFSGSSD---NTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNR 424 (450)
Q Consensus 350 ~~~~~~~~~~~~v~~~~~~--~~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 424 (450)
.......-..+.|+ .++++.++-| |.+-+||.... ..+...+.+-. ..-+.|+|+++
T Consensus 311 -----~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r-------f~~~~~~~~~n--~s~~~wspd~q---- 372 (561)
T COG5354 311 -----FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR-------FKVAGAFNGLN--TSYCDWSPDGQ---- 372 (561)
T ss_pred -----EecCCcccccccccCcccEEEEecCCccccceEEeccCCc-------eEEEEEeecCC--ceEeeccCCce----
Confidence 11112222445555 4577776665 67999998752 45554555433 45568999998
Q ss_pred CCCCCCceEEEEEcc------cCCcEEEEEe
Q 041325 425 NSDHSSTSFLVYSGS------LDCEIKIWQI 449 (450)
Q Consensus 425 ~~~~~~~~~~l~s~~------~Dg~i~iw~l 449 (450)
++.+.- .|..|+|||+
T Consensus 373 ---------F~~~~~ts~k~~~Dn~i~l~~v 394 (561)
T COG5354 373 ---------FYDTDTTSEKLRVDNSIKLWDV 394 (561)
T ss_pred ---------EEEecCCCcccccCcceEEEEe
Confidence 555543 4888999997
No 272
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.08 E-value=5.4e-10 Score=101.48 Aligned_cols=239 Identities=15% Similarity=0.201 Sum_probs=158.1
Q ss_pred EEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---EEEEeCCCeEEEEEcCCCceeEEe
Q 041325 87 LLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSAYYS 163 (450)
Q Consensus 87 ~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~ 163 (450)
.+++-+ ...-.+|++....-.. ..+.+.+|+..|+.+-|.+.. +++++.|-.+..||+++.....+
T Consensus 84 wiVsts-~qkaiiwnlA~ss~~a---------Ief~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~y- 152 (1081)
T KOG0309|consen 84 WIVSTS-NQKAIIWNLAKSSSNA---------IEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFY- 152 (1081)
T ss_pred eEEecC-cchhhhhhhhcCCccc---------eEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCccee-
Confidence 444444 4556689876543222 234688999999999998555 99999999999999998732111
Q ss_pred ccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCe
Q 041325 164 TSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFR 243 (450)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 243 (450)
.+..-......++|+-....+.+.+..+.|++||.+.+.
T Consensus 153 -----------------------------------------s~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs 191 (1081)
T KOG0309|consen 153 -----------------------------------------STSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGS 191 (1081)
T ss_pred -----------------------------------------eeecccccCceeeecccCcchhhhccCCceEEEeccCCC
Confidence 111122345678898744445555667889999998764
Q ss_pred -EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCC--CEEE
Q 041325 244 -CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDG--TVLY 320 (450)
Q Consensus 244 -~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~--~~l~ 320 (450)
++..++ .|...|+.+.|+......+.+++.||+|+.||..... .. .......+.+|..-.+.|-| .++.
T Consensus 192 ~pl~s~K-~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt----~e---~~~~vtt~~piw~~r~~Pfg~g~~~m 263 (1081)
T KOG0309|consen 192 TPLCSLK-GHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKST----TE---SKRTVTTNFPIWRGRYLPFGEGYCIM 263 (1081)
T ss_pred cceEEec-ccceeeehHHHhhhhhhhhcccCCCCceeeecccccc----cc---cceeccccCcceeccccccCceeEec
Confidence 566666 6888999999986556679999999999999986543 11 11122345677777777743 3333
Q ss_pred EeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe------CC------eEEEEeCCCeEEEeeCCC
Q 041325 321 SGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV------SN------LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 321 ~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~------~~------~l~s~~~dg~v~iwd~~~ 388 (450)
---.+..+.+++.++..... .......+...+.+|...|..+.|. ++ .|+|=+.|..+++|.+.+
T Consensus 264 p~~G~n~v~~~~c~n~d~e~---n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 264 PMVGGNMVPQLRCENSDLEW---NVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cccCCeeeeeccccchhhhh---ccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 22223355555544321110 0001123557889999999877774 11 799999999999998765
No 273
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.07 E-value=6e-08 Score=89.73 Aligned_cols=118 Identities=17% Similarity=0.105 Sum_probs=78.5
Q ss_pred CCCceEEEEEccCCCEEEEEeCC---CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCc--EEEEeC
Q 041325 209 HVDTVSALALSSDGSLLYSTSWD---RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTK--IKVWKK 283 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~--i~vwd~ 283 (450)
+...+....|+|||+.|+..+.+ ..|.+||+.+++.... . ...+......|+|+++.++++...+|. |.++|+
T Consensus 216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l-t-~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl 293 (448)
T PRK04792 216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV-T-SFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDI 293 (448)
T ss_pred CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe-c-CCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEEC
Confidence 45578889999999988876532 2588899988765332 2 223344578999977766666677775 677787
Q ss_pred cchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC-CC--cEEEEEcCCCc
Q 041325 284 LRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC-DR--SILVWERDQGN 337 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~-dg--~i~vwd~~~~~ 337 (450)
.+++ ...+..+.......+|+|||+.|+..+. ++ .|+++|+.+++
T Consensus 294 ~tg~---------~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~ 341 (448)
T PRK04792 294 ATKA---------LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGK 341 (448)
T ss_pred CCCC---------eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 6554 1222233445677899999998876654 33 46667776654
No 274
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.06 E-value=3.7e-07 Score=92.67 Aligned_cols=225 Identities=11% Similarity=0.074 Sum_probs=130.0
Q ss_pred ceEEEEEccCCCEEEEEe-CCCcEEEEecCCCeEEEEeec-c---------------cccceEEEEEeecCCcEEEEEcC
Q 041325 212 TVSALALSSDGSLLYSTS-WDRTFKIWRTSDFRCLESVKN-A---------------HDDAINAIVVSKSNDGFVYTGSA 274 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~---------------~~~~v~~~~~~~~~~~~l~~~~~ 274 (450)
....++++++++.|+++. .++.|+.+|..++.. ..+.. + .-.....++++|.++.++++...
T Consensus 625 ~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~ 703 (1057)
T PLN02919 625 RPQGLAYNAKKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG 703 (1057)
T ss_pred CCcEEEEeCCCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC
Confidence 467899999887665554 467899999877653 33210 0 01234678999866667788888
Q ss_pred CCcEEEEeCcchhhhccccchhhhhHh------hcccceEEEEEcCCCCEE-EEeeCCCcEEEEEcCCCceeeeCCCCCC
Q 041325 275 DTKIKVWKKLRAALQVNKKHSLVQTLE------KHKSAVTALALSTDGTVL-YSGACDRSILVWERDQGNYIVDGDDDSG 347 (450)
Q Consensus 275 dg~i~vwd~~~~~~~~~~~~~~~~~~~------~~~~~i~~l~~~~~~~~l-~~g~~dg~i~vwd~~~~~~~~~~~~~~~ 347 (450)
++.|++||..++............... ..-.....|+++|+++.| ++-+.++.|++||+.++...........
T Consensus 704 ~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~ 783 (1057)
T PLN02919 704 QHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPT 783 (1057)
T ss_pred CCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccc
Confidence 899999998765421100000000000 111345779999999855 4555678999999987653211000000
Q ss_pred ceeeecccc--------CCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCC-----ceeEEEecCCCcceEE
Q 041325 348 HMVLKGALR--------GHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKG-----YSCLAVLEGHRRPVKC 412 (450)
Q Consensus 348 ~~~~~~~~~--------~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~-----~~~~~~~~~h~~~v~~ 412 (450)
.......+. ..-....+++++ ++++++-+.++.|++||..++......+ ..--....+.-.....
T Consensus 784 ~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~G 863 (1057)
T PLN02919 784 FSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAG 863 (1057)
T ss_pred cCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceE
Confidence 000000000 001112466666 4578888889999999987641100000 0000001122235678
Q ss_pred EEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 413 LTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 413 l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
|+++++++ ++++-+.++.|++||++
T Consensus 864 Iavd~dG~-------------lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 864 LALGENGR-------------LFVADTNNSLIRYLDLN 888 (1057)
T ss_pred EEEeCCCC-------------EEEEECCCCEEEEEECC
Confidence 99999988 89999999999999974
No 275
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.06 E-value=2.2e-06 Score=72.30 Aligned_cols=280 Identities=10% Similarity=0.130 Sum_probs=166.5
Q ss_pred CCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeC---CCeEEEEEcCCC--ceeEEeccC
Q 041325 94 NGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQ---DHKIRVWKIDNN--TSAYYSTSG 166 (450)
Q Consensus 94 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~---dg~i~iw~~~~~--~~~~~~~~~ 166 (450)
+.-|++|++++..-... ......+.+.++-|+|+++. |.++.. +|.|..|.++.. ..
T Consensus 15 s~gI~v~~ld~~~g~l~---------~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~L------- 78 (346)
T COG2706 15 SQGIYVFNLDTKTGELS---------LLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRL------- 78 (346)
T ss_pred CCceEEEEEeCcccccc---------hhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeE-------
Confidence 46799999874331111 11234566788999999877 777654 477888887753 21
Q ss_pred cccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe-CCCcEEEEecCC-CeE
Q 041325 167 KLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS-WDRTFKIWRTSD-FRC 244 (450)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~ 244 (450)
..+.... ....+-+-+++++++++++++. ..|.|.++-++. |..
T Consensus 79 -------t~ln~~~---------------------------~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l 124 (346)
T COG2706 79 -------TFLNRQT---------------------------LPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSL 124 (346)
T ss_pred -------EEeeccc---------------------------cCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCcc
Confidence 1111110 0112337799999999988876 468899998865 332
Q ss_pred EEEee-cccccc----------eEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEc
Q 041325 245 LESVK-NAHDDA----------INAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALS 313 (450)
Q Consensus 245 ~~~~~-~~~~~~----------v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 313 (450)
..... ..|.+. +....+.|+++.++++.-.-..|.+|++..+++.... ...+ ......+.|.|+
T Consensus 125 ~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~----~~~v-~~G~GPRHi~FH 199 (346)
T COG2706 125 QPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPAD----PAEV-KPGAGPRHIVFH 199 (346)
T ss_pred ccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCcccccc----cccc-CCCCCcceEEEc
Confidence 22111 023333 8888899866534444444557999999877633221 1122 345667899999
Q ss_pred CCCCEEEEeeC-CCcEEEEEcCCCc-eeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeC-CCeEEEeeCCC
Q 041325 314 TDGTVLYSGAC-DRSILVWERDQGN-YIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSS-DNTIRIWRRSS 388 (450)
Q Consensus 314 ~~~~~l~~g~~-dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~-dg~v~iwd~~~ 388 (450)
|++++....++ +++|.+|...... .+..+. ....+...+.+ .....+|..+ |++|.++.. ...|-+|.+..
T Consensus 200 pn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ---~i~tlP~dF~g-~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~ 275 (346)
T COG2706 200 PNGKYAYLVNELNSTVDVLEYNPAVGKFEELQ---TIDTLPEDFTG-TNWAAAIHISPDGRFLYASNRGHDSIAVFSVDP 275 (346)
T ss_pred CCCcEEEEEeccCCEEEEEEEcCCCceEEEee---eeccCccccCC-CCceeEEEECCCCCEEEEecCCCCeEEEEEEcC
Confidence 99999887765 8999999988631 110000 00001111111 2233444444 567666543 34688887764
Q ss_pred CccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccC-CcEEEEEe
Q 041325 389 SVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLD-CEIKIWQI 449 (450)
Q Consensus 389 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~D-g~i~iw~l 449 (450)
. ......+.....+...-....+.+.++ +|+++..| ..|.+|.+
T Consensus 276 ~----~g~L~~~~~~~teg~~PR~F~i~~~g~-------------~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 276 D----GGKLELVGITPTEGQFPRDFNINPSGR-------------FLIAANQKSDNITVFER 320 (346)
T ss_pred C----CCEEEEEEEeccCCcCCccceeCCCCC-------------EEEEEccCCCcEEEEEE
Confidence 3 222344455555555677888888888 77777654 45777764
No 276
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.06 E-value=7.1e-07 Score=78.05 Aligned_cols=264 Identities=13% Similarity=0.131 Sum_probs=151.6
Q ss_pred ccCCCCCccceeeeEEeecCCCcceEEEEEeCCEEEEeeC----------CCcEEEecCCCCCceeeeecCCCCcceeEE
Q 041325 54 RKQAPAASEHQCSATLKVKGNSSYIPSLAIAGKLLYGGSS----------NGEIRAWNRDPNNYVNITSTDVGDHANVVA 123 (450)
Q Consensus 54 ~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~d~~~l~tgs~----------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~ 123 (450)
+.......+.+.+.++.. |..... .++-|++.|+.+.. +..|.+||..+.+.+.......... .
T Consensus 28 ~v~ViD~~~~~v~g~i~~-G~~P~~-~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~--~-- 101 (352)
T TIGR02658 28 QVYTIDGEAGRVLGMTDG-GFLPNP-VVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPR--F-- 101 (352)
T ss_pred eEEEEECCCCEEEEEEEc-cCCCce-eECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCch--h--
Confidence 333445556777777774 333333 25568888877655 7899999999999876643321100 0
Q ss_pred ecCCCceEEEEEeCCe--EEEEe-C-CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEe
Q 041325 124 TGNGDAVKSLVVLGDK--LFSAH-Q-DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVR 199 (450)
Q Consensus 124 ~~h~~~v~~l~~~~~~--l~s~~-~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (450)
........+++++|+ |+... . +..|.+.|+.+++........ .|...++..+..+...+..+....+.
T Consensus 102 -~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp-------~~~~vy~t~e~~~~~~~~Dg~~~~v~ 173 (352)
T TIGR02658 102 -LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVP-------DCYHIFPTANDTFFMHCRDGSLAKVG 173 (352)
T ss_pred -hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCC-------CCcEEEEecCCccEEEeecCceEEEE
Confidence 012234466777776 55544 3 789999999999665433332 12222233333333333333222211
Q ss_pred e--------cceeeeecCCCceEEE-EEcc-CCCEEEEEeCCCcEEEEecCC-----CeEEEEeecc------cccceEE
Q 041325 200 R--------HKKCTWVHHVDTVSAL-ALSS-DGSLLYSTSWDRTFKIWRTSD-----FRCLESVKNA------HDDAINA 258 (450)
Q Consensus 200 ~--------~~~~~~~~~~~~v~~~-~~~~-~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~------~~~~v~~ 258 (450)
. .....+..-..++..= .|.+ +++++..... |.|.+.|+.. .+....+... ..+...-
T Consensus 174 ~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ 252 (352)
T TIGR02658 174 YGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQ 252 (352)
T ss_pred ecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCccee
Confidence 1 0000111100000000 3455 8888877776 9999999543 3333322211 2334455
Q ss_pred EEEeecCCcEEEEEc---------CCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCC-EEEEee-CCCc
Q 041325 259 IVVSKSNDGFVYTGS---------ADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGT-VLYSGA-CDRS 327 (450)
Q Consensus 259 ~~~~~~~~~~l~~~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~g~-~dg~ 327 (450)
++++++++.+++... ..+.|.++|..+.+ .+..+. -...+..++++||++ +|++.. .++.
T Consensus 253 ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~k--------vi~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~ 323 (352)
T TIGR02658 253 VAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGK--------RLRKIE-LGHEIDSINVSQDAKPLLYALSTGDKT 323 (352)
T ss_pred EEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCe--------EEEEEe-CCCceeeEEECCCCCeEEEEeCCCCCc
Confidence 999986665444332 22589999997766 444443 245789999999999 887766 5788
Q ss_pred EEEEEcCCCceeee
Q 041325 328 ILVWERDQGNYIVD 341 (450)
Q Consensus 328 i~vwd~~~~~~~~~ 341 (450)
|.++|..+++.+..
T Consensus 324 VsViD~~t~k~i~~ 337 (352)
T TIGR02658 324 LYIFDAETGKELSS 337 (352)
T ss_pred EEEEECcCCeEEee
Confidence 99999999887643
No 277
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=99.04 E-value=2.5e-07 Score=84.70 Aligned_cols=271 Identities=12% Similarity=0.099 Sum_probs=154.7
Q ss_pred EEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCcee
Q 041325 81 LAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSA 160 (450)
Q Consensus 81 ~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~ 160 (450)
+..++..++.++.+|.+..+|.++++......... .........++.++.+..+|.|..+|.++++..
T Consensus 116 ~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~------------~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~ 183 (394)
T PRK11138 116 VTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG------------EALSRPVVSDGLVLVHTSNGMLQALNESDGAVK 183 (394)
T ss_pred cEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC------------ceecCCEEECCEEEEECCCCEEEEEEccCCCEe
Confidence 34466777788889999999999998776533211 011111233556777888999999999988543
Q ss_pred EEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 041325 161 YYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTS 240 (450)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 240 (450)
....... . .........++. .+..++.++.+|.+..+|..
T Consensus 184 W~~~~~~----------------~------------------~~~~~~~~sP~v------~~~~v~~~~~~g~v~a~d~~ 223 (394)
T PRK11138 184 WTVNLDV----------------P------------------SLTLRGESAPAT------AFGGAIVGGDNGRVSAVLME 223 (394)
T ss_pred eeecCCC----------------C------------------cccccCCCCCEE------ECCEEEEEcCCCEEEEEEcc
Confidence 2221110 0 000000111111 12346667778899999998
Q ss_pred CCeEEEEeeccccc------ceEEEEEee-cCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEc
Q 041325 241 DFRCLESVKNAHDD------AINAIVVSK-SNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALS 313 (450)
Q Consensus 241 ~~~~~~~~~~~~~~------~v~~~~~~~-~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 313 (450)
+++.+......... ....+...| -.++.++.++.+|.+..+|..+++. .++.. + .....+..
T Consensus 224 ~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~----~W~~~--~----~~~~~~~~- 292 (394)
T PRK11138 224 QGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQI----VWKRE--Y----GSVNDFAV- 292 (394)
T ss_pred CChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCE----EEeec--C----CCccCcEE-
Confidence 88876554311110 000111111 0134677777899999999988762 11110 1 11112222
Q ss_pred CCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCCCcccc
Q 041325 314 TDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDH 393 (450)
Q Consensus 314 ~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~ 393 (450)
++..++.++.+|.+..+|..+++.+..... . .+ ....+....+++|+.++.||.|.+.|..++
T Consensus 293 -~~~~vy~~~~~g~l~ald~~tG~~~W~~~~----------~-~~-~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG---- 355 (394)
T PRK11138 293 -DGGRIYLVDQNDRVYALDTRGGVELWSQSD----------L-LH-RLLTAPVLYNGYLVVGDSEGYLHWINREDG---- 355 (394)
T ss_pred -ECCEEEEEcCCCeEEEEECCCCcEEEcccc----------c-CC-CcccCCEEECCEEEEEeCCCEEEEEECCCC----
Confidence 466788888999999999999876642211 0 00 112233345778899999999999998876
Q ss_pred CCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 394 QKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 394 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+.+....-....+.+--... +. .|+.++.||.|+.+++
T Consensus 356 ----~~~~~~~~~~~~~~s~P~~~-~~-------------~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 356 ----RFVAQQKVDSSGFLSEPVVA-DD-------------KLLIQARDGTVYAITR 393 (394)
T ss_pred ----CEEEEEEcCCCcceeCCEEE-CC-------------EEEEEeCCceEEEEeC
Confidence 34443332222222211112 23 6888899999988764
No 278
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.02 E-value=5e-07 Score=73.76 Aligned_cols=189 Identities=13% Similarity=0.185 Sum_probs=111.9
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeeccc------ccceEEEEEeecC-----CcEEEEEcCCCcEEEE
Q 041325 213 VSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAH------DDAINAIVVSKSN-----DGFVYTGSADTKIKVW 281 (450)
Q Consensus 213 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~-----~~~l~~~~~dg~i~vw 281 (450)
=+-++|+||+.+||.+...|+|+++|+.. ..+..+...+ ...|..+.|.+.. ...|++-..+|.++-|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g-~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy 124 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMG-SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY 124 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEeccc-ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence 46799999999999999999999999975 4444444222 3566777776533 2247777788888877
Q ss_pred eCcchhhhccccchhhhhH---hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC
Q 041325 282 KKLRAALQVNKKHSLVQTL---EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358 (450)
Q Consensus 282 d~~~~~~~~~~~~~~~~~~---~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (450)
-+..+.. ........+ ..+...|.++.++|.-++|++|+.... +++ ...+.
T Consensus 125 ~vs~gt~---q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~------~~~-----------------~s~a~ 178 (282)
T PF15492_consen 125 LVSVGTN---QGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN------QDG-----------------MSKAS 178 (282)
T ss_pred EEEcccC---CcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC------CCc-----------------ccccc
Confidence 7633210 111112222 124568999999999888888765322 000 00111
Q ss_pred ccceEEEEEe---CCeE-EEEeCCCe------EEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCC
Q 041325 359 TKAILCLAVV---SNLL-FSGSSDNT------IRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDH 428 (450)
Q Consensus 359 ~~~v~~~~~~---~~~l-~s~~~dg~------v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~ 428 (450)
...+++-..- |.+. ++...|+. -.+|.+-+ .+...........|..|..+||+.
T Consensus 179 ~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~--------~~~fs~~~~~~d~i~kmSlSPdg~-------- 242 (282)
T PF15492_consen 179 SCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPS--------FKFFSRQGQEQDGIFKMSLSPDGS-------- 242 (282)
T ss_pred ccCceEEEEcCCCCcEEEccccCccccccccccceeeccc--------eeeeeccccCCCceEEEEECCCCC--------
Confidence 1222222221 1111 22222221 12333222 112222233467899999999999
Q ss_pred CCceEEEEEcccCCcEEEEEe
Q 041325 429 SSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 429 ~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+||+...+|.|.+|+|
T Consensus 243 -----~La~ih~sG~lsLW~i 258 (282)
T PF15492_consen 243 -----LLACIHFSGSLSLWEI 258 (282)
T ss_pred -----EEEEEEcCCeEEEEec
Confidence 9999999999999987
No 279
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.01 E-value=1.4e-08 Score=81.00 Aligned_cols=158 Identities=16% Similarity=0.197 Sum_probs=96.7
Q ss_pred CCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEE-EEeecccccceEEEEEeecCCcEEEEEc-----CCCcEEEEe
Q 041325 209 HVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCL-ESVKNAHDDAINAIVVSKSNDGFVYTGS-----ADTKIKVWK 282 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----~dg~i~vwd 282 (450)
|.++-.+-+.+-.++.+++++.||.+.+.+.+.-..+ ..+...|.+. .+.+... ..+++.++. .-+..+.|+
T Consensus 88 ~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~-~~~~i~s~~~g~~n~~d~~~a~~ 165 (319)
T KOG4714|consen 88 NSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICR-HGNSILSGGCGNWNAQDNFYANT 165 (319)
T ss_pred cCCCCCcccccccCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceee-cccEEecCCcceEeeccceeeec
Confidence 3333333334445677999999999999988752111 1111111111 1112221 122332221 123445566
Q ss_pred CcchhhhccccchhhhhHhhcccceEEEEEcCC-CCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccc
Q 041325 283 KLRAALQVNKKHSLVQTLEKHKSAVTALALSTD-GTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA 361 (450)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (450)
++..+ ...........|++++-+|. .+++++|+.||.+-+||.+.... +...+..|+.+
T Consensus 166 ~~p~~--------t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~------------p~S~l~ahk~~ 225 (319)
T KOG4714|consen 166 LDPIK--------TLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAM------------PVSLLKAHKAE 225 (319)
T ss_pred ccccc--------cccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccc------------hHHHHHHhhhh
Confidence 54322 11111112234899999984 55778889999999999997632 34677899999
Q ss_pred eEEEEEe---CCeEEEEeCCCeEEEeeCCC
Q 041325 362 ILCLAVV---SNLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 362 v~~~~~~---~~~l~s~~~dg~v~iwd~~~ 388 (450)
|..+.|+ |+.|+++++||.+..||..+
T Consensus 226 i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 226 IWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred hhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 9999998 45999999999999999874
No 280
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.00 E-value=3.2e-06 Score=74.04 Aligned_cols=266 Identities=10% Similarity=0.045 Sum_probs=148.8
Q ss_pred CcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EE-EEe---------CCCeEEEEEcCCCceeEE
Q 041325 95 GEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LF-SAH---------QDHKIRVWKIDNNTSAYY 162 (450)
Q Consensus 95 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~-s~~---------~dg~i~iw~~~~~~~~~~ 162 (450)
|+|.+.|..+.+.+..... +.... .+ +++|+ ++ +.+ .+..|.+||..+.+.
T Consensus 27 ~~v~ViD~~~~~v~g~i~~-----------G~~P~--~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~--- 89 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDG-----------GFLPN--PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP--- 89 (352)
T ss_pred ceEEEEECCCCEEEEEEEc-----------cCCCc--ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE---
Confidence 8999999999887665222 21111 23 66665 44 444 588999999999843
Q ss_pred eccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe-C-CCcEEEEecC
Q 041325 163 STSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS-W-DRTFKIWRTS 240 (450)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~-dg~i~iwd~~ 240 (450)
+..++...+... ........++++|||++++... . +..|.+.|+.
T Consensus 90 -------------~~~i~~p~~p~~--------------------~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~ 136 (352)
T TIGR02658 90 -------------IADIELPEGPRF--------------------LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLE 136 (352)
T ss_pred -------------EeEEccCCCchh--------------------hccCccceEEECCCCCEEEEecCCCCCEEEEEECC
Confidence 333322111000 0112345788999999998776 3 7899999999
Q ss_pred CCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhh-----cccceEEEEEcC-
Q 041325 241 DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEK-----HKSAVTALALST- 314 (450)
Q Consensus 241 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-----~~~~i~~l~~~~- 314 (450)
+++.+.++.. .+...-.... +. -..+-+.||......+......... ....+.. ...+ .|.+
T Consensus 137 ~~kvv~ei~v--p~~~~vy~t~--e~-~~~~~~~Dg~~~~v~~d~~g~~~~~---~~~vf~~~~~~v~~rP----~~~~~ 204 (352)
T TIGR02658 137 GKAFVRMMDV--PDCYHIFPTA--ND-TFFMHCRDGSLAKVGYGTKGNPKIK---PTEVFHPEDEYLINHP----AYSNK 204 (352)
T ss_pred CCcEEEEEeC--CCCcEEEEec--CC-ccEEEeecCceEEEEecCCCceEEe---eeeeecCCccccccCC----ceEcC
Confidence 9999998873 2222222222 22 2223345565555443332100000 0001111 0111 4455
Q ss_pred CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeecc--c--cCCccceEEEEEe--CCeEEEEe----------CC
Q 041325 315 DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGA--L--RGHTKAILCLAVV--SNLLFSGS----------SD 378 (450)
Q Consensus 315 ~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~v~~~~~~--~~~l~s~~----------~d 378 (450)
+|+++++..+ |.|.+.|+........ ........ . .-..+...-++++ ++.++... ..
T Consensus 205 dg~~~~vs~e-G~V~~id~~~~~~~~~-----~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~ 278 (352)
T TIGR02658 205 SGRLVWPTYT-GKIFQIDLSSGDAKFL-----PAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTAS 278 (352)
T ss_pred CCcEEEEecC-CeEEEEecCCCcceec-----ceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCC
Confidence 8888887776 9999999754332110 00000000 0 0122233336666 44555432 22
Q ss_pred CeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC-CCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 379 NTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD-YSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 379 g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+.|.++|..+. +.+..+.- ...+..+++++|++ . ++++...++.|.+.|+
T Consensus 279 ~~V~ViD~~t~--------kvi~~i~v-G~~~~~iavS~Dgkp~------------lyvtn~~s~~VsViD~ 329 (352)
T TIGR02658 279 RFLFVVDAKTG--------KRLRKIEL-GHEIDSINVSQDAKPL------------LYALSTGDKTLYIFDA 329 (352)
T ss_pred CEEEEEECCCC--------eEEEEEeC-CCceeeEEECCCCCeE------------EEEeCCCCCcEEEEEC
Confidence 57999998874 55555542 45789999999988 3 4555557888999986
No 281
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.00 E-value=4.8e-08 Score=78.34 Aligned_cols=198 Identities=9% Similarity=-0.032 Sum_probs=123.1
Q ss_pred CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhH
Q 041325 221 DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTL 300 (450)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 300 (450)
...+|+.|+..|...+|...+.+....+-..+...|.-+.-.-+..--+..++.|.++++.++..+. .....
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s--------~~~~~ 154 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDS--------NKFAV 154 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCc--------cccee
Confidence 3457999999999999999876654444323333332221111122247778888999988875443 11111
Q ss_pred hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCC
Q 041325 301 EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSD 378 (450)
Q Consensus 301 ~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~d 378 (450)
....-.+.++++++|++++++.+....|..|.+...... .........+..-.+.+|+. ..+|++..|
T Consensus 155 h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey----------~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qd 224 (344)
T KOG4532|consen 155 HNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEY----------IENIYEAPTSDHGFYNSFSENDLQFAVVFQD 224 (344)
T ss_pred eccccceeeeEEcCCCceEEEecCCCcceEEEeCCccce----------eeeeEecccCCCceeeeeccCcceEEEEecC
Confidence 111123788999999999999999999999998753211 11112222333345667764 399999999
Q ss_pred CeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 379 NTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 379 g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
|++.|||++....... .....-..|.+.+..+.|++-+... +|+-.-.=+.+.+-|+|
T Consensus 225 g~~~I~DVR~~~tpm~---~~sstrp~hnGa~R~c~Fsl~g~lD-----------LLf~sEhfs~~hv~D~R 282 (344)
T KOG4532|consen 225 GTCAIYDVRNMATPMA---EISSTRPHHNGAFRVCRFSLYGLLD-----------LLFISEHFSRVHVVDTR 282 (344)
T ss_pred CcEEEEEecccccchh---hhcccCCCCCCceEEEEecCCCcce-----------EEEEecCcceEEEEEcc
Confidence 9999999997533221 1122234589999999999865521 34333334456666654
No 282
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.98 E-value=2.1e-06 Score=85.61 Aligned_cols=209 Identities=14% Similarity=0.150 Sum_probs=126.5
Q ss_pred CCcceEEEEE--eCCEEEEeeC---C---CcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEe
Q 041325 74 NSSYIPSLAI--AGKLLYGGSS---N---GEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAH 144 (450)
Q Consensus 74 h~~~v~~~~~--d~~~l~tgs~---d---g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~ 144 (450)
+.+.-..++| ||.++|+.+. + ..+|||+.+ |.+....+. -.+--.+++|.|.+ ++++.
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~------------v~gLe~~l~WrPsG~lIA~~ 274 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEP------------VDGLEGALSWRPSGNLIASS 274 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecccc------------CCCccCCccCCCCCCEEEEE
Confidence 4556778889 9999998875 3 479999977 443333111 11223467888777 44443
Q ss_pred C----CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc
Q 041325 145 Q----DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS 220 (450)
Q Consensus 145 ~----dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 220 (450)
. ...|.+|.-+...- .-..+ .+......|..+.|++
T Consensus 275 q~~~~~~~VvFfErNGLrh---------------geF~l-------------------------~~~~~~~~v~~l~Wn~ 314 (928)
T PF04762_consen 275 QRLPDRHDVVFFERNGLRH---------------GEFTL-------------------------RFDPEEEKVIELAWNS 314 (928)
T ss_pred EEcCCCcEEEEEecCCcEe---------------eeEec-------------------------CCCCCCceeeEEEECC
Confidence 3 13344444332210 00000 0112445789999999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCe--EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc----hhhh-----
Q 041325 221 DGSLLYSTSWDRTFKIWRTSDFR--CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR----AALQ----- 289 (450)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~----~~~~----- 289 (450)
++..|+....|. |.+|-..+.. ..+.+.......+..+.|+|.....|...+.+|.+..+++.- +...
T Consensus 315 ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~ 393 (928)
T PF04762_consen 315 DSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDN 393 (928)
T ss_pred CCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCc
Confidence 999999977554 9999988765 222333233444566999997776677777767776554321 1100
Q ss_pred -----------------ccccchhhhh-HhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCC
Q 041325 290 -----------------VNKKHSLVQT-LEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQG 336 (450)
Q Consensus 290 -----------------~~~~~~~~~~-~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~ 336 (450)
...-++++.. .-.....|..++|++++..+++-..||.|.+|.....
T Consensus 394 g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 394 GTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred eEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence 0000111111 1124578999999999888999999999999996543
No 283
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.97 E-value=1.7e-08 Score=85.53 Aligned_cols=156 Identities=19% Similarity=0.238 Sum_probs=107.4
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCeE----EEEeecccccceEEEEEeecCCcEEEEEcC---CCcEEEEeCc
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRC----LESVKNAHDDAINAIVVSKSNDGFVYTGSA---DTKIKVWKKL 284 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg~i~vwd~~ 284 (450)
....+..++.++++|.+..+....++++..... .... .-....+++.+..... ....+.. ...+.+|...
T Consensus 64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~--~v~~~~~ai~~~~~~~-sv~v~dkagD~~~~di~s~~ 140 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVS--CVPKRPTAISFIREDT-SVLVADKAGDVYSFDILSAD 140 (390)
T ss_pred cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEe--ecccCcceeeeeeccc-eEEEEeecCCceeeeeeccc
Confidence 344556778899999998888877777665432 1111 1233344555554233 3333333 3444455443
Q ss_pred chhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEE
Q 041325 285 RAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILC 364 (450)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 364 (450)
.+ ....+.+|-+.++.++++||+++|+++..|..|+|-.....- ....-.-||..-|..
T Consensus 141 ~~---------~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f------------~IesfclGH~eFVS~ 199 (390)
T KOG3914|consen 141 SG---------RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATF------------VIESFCLGHKEFVST 199 (390)
T ss_pred cc---------CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCccc------------chhhhccccHhheee
Confidence 22 344556899999999999999999999999999998776432 123455689999999
Q ss_pred EEEeCC-eEEEEeCCCeEEEeeCCCCcc
Q 041325 365 LAVVSN-LLFSGSSDNTIRIWRRSSSVT 391 (450)
Q Consensus 365 ~~~~~~-~l~s~~~dg~v~iwd~~~~~~ 391 (450)
++...+ .|+++|.|++|++||+.++..
T Consensus 200 isl~~~~~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 200 ISLTDNYLLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred eeeccCceeeecCCCCcEEEEecccCCc
Confidence 999865 679999999999999998744
No 284
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.97 E-value=8e-08 Score=85.01 Aligned_cols=270 Identities=12% Similarity=0.162 Sum_probs=157.1
Q ss_pred ceEEEEE--eCCEEEEe-----eCC-----CcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEE
Q 041325 77 YIPSLAI--AGKLLYGG-----SSN-----GEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSA 143 (450)
Q Consensus 77 ~v~~~~~--d~~~l~tg-----s~d-----g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~ 143 (450)
.+.++.| -|++|.|= ..+ -.+.+|+++++..... +..-...-++..|+.|. +++=
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~------------~q~k~Q~~W~~qfs~dEsl~ar 142 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQ------------IQKKMQNGWVPQFSIDESLAAR 142 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCCCCceeeeeeccceehhh------------eehhhhcCcccccccchhhhhh
Confidence 5667777 46666652 112 3467998888443322 11111122688888776 4444
Q ss_pred eCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCc-----eEEEeecceeee-------ecCCC
Q 041325 144 HQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANN-----YVQVRRHKKCTW-------VHHVD 211 (450)
Q Consensus 144 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~-------~~~~~ 211 (450)
-..+.+.+|+..+.... ...+.......+..-+.......+++.+.. .++++....... .-...
T Consensus 143 lv~nev~f~~~~~f~~~----~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFka 218 (566)
T KOG2315|consen 143 LVSNEVQFYDLGSFKTI----QHKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKA 218 (566)
T ss_pred hhcceEEEEecCCccce----eeeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccccc
Confidence 44577999998874321 111112222333333443444555544432 333333221100 00111
Q ss_pred ceEEEEEccCCCE-EEEEe--C---------CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcE-EEEEcCCCcE
Q 041325 212 TVSALALSSDGSL-LYSTS--W---------DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGF-VYTGSADTKI 278 (450)
Q Consensus 212 ~v~~~~~~~~~~~-l~~~~--~---------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~~~~~dg~i 278 (450)
.-..+.|++-|+- |+.++ - +.++++.+++...+...+ ...++|.++.|++++..+ ++.|..=-.+
T Consensus 219 dkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L--~k~GPVhdv~W~~s~~EF~VvyGfMPAkv 296 (566)
T KOG2315|consen 219 DKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL--LKEGPVHDVTWSPSGREFAVVYGFMPAKV 296 (566)
T ss_pred ceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec--CCCCCceEEEECCCCCEEEEEEecccceE
Confidence 2234667775543 22222 2 346888888854555544 468999999999977666 5566677889
Q ss_pred EEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC---CCcEEEEEcCCCceeeeCCCCCCceeeeccc
Q 041325 279 KVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC---DRSILVWERDQGNYIVDGDDDSGHMVLKGAL 355 (450)
Q Consensus 279 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 355 (450)
.+||++.. ++..+ ..++-+++-|+|.|++|+.++- -|.|-|||+.+.+++ ..+
T Consensus 297 tifnlr~~---------~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i-------------~~~ 352 (566)
T KOG2315|consen 297 TIFNLRGK---------PVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLI-------------AKF 352 (566)
T ss_pred EEEcCCCC---------EeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhc-------------ccc
Confidence 99997543 33333 4567788999999999888765 488999999987655 344
Q ss_pred cCCccceEEEEEeCCeEEEEeC------CCeEEEeeCCC
Q 041325 356 RGHTKAILCLAVVSNLLFSGSS------DNTIRIWRRSS 388 (450)
Q Consensus 356 ~~~~~~v~~~~~~~~~l~s~~~------dg~v~iwd~~~ 388 (450)
......+...+.+|.+++|+.. |+.++||++..
T Consensus 353 ~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 353 KAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred ccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 4433333333334568877764 78899999874
No 285
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=2.7e-08 Score=85.55 Aligned_cols=264 Identities=17% Similarity=0.174 Sum_probs=169.7
Q ss_pred CCCcceEEEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeC-CCe
Q 041325 73 GNSSYIPSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQ-DHK 148 (450)
Q Consensus 73 ~h~~~v~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~-dg~ 148 (450)
-|.+.|+.+.. -.+++.+++.||.++.|.-..-..+... ..+..|...|.+++.+-++ +.|.+. |..
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGvEfV---------KhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs 77 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGVEFV---------KHFRAHLGVILSLAVSYDGWLFRSVEDPDHS 77 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccceeeh---------hhhHHHHHHHHhhhccccceeEeeccCcccc
Confidence 48888998888 6899999999999999975442222211 1255788888888888776 666566 999
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCC-EEE
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGS-LLY 226 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~-~l~ 226 (450)
++++|+++-.. +..+. +..-.+.+. ...++ +.. .++
T Consensus 78 ~KvfDvEn~Dm----------------inmiK-------------------------L~~lPg~a~-wv~skGd~~s~IA 115 (558)
T KOG0882|consen 78 VKVFDVENFDM----------------INMIK-------------------------LVDLPGFAE-WVTSKGDKISLIA 115 (558)
T ss_pred eeEEEeeccch----------------hhhcc-------------------------cccCCCceE-EecCCCCeeeeEE
Confidence 99999987632 11110 000111111 11222 111 222
Q ss_pred -EEeCCCcEEEEecCCCe-EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc------hhhhc-cccchhh
Q 041325 227 -STSWDRTFKIWRTSDFR-CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR------AALQV-NKKHSLV 297 (450)
Q Consensus 227 -~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~------~~~~~-~~~~~~~ 297 (450)
+.-.++.+.++|-.... ....+...|..+|..+.+++..+ .+++....|.|.-|.... .+... .+....+
T Consensus 116 Vs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D-s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdL 194 (558)
T KOG0882|consen 116 VSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD-SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDL 194 (558)
T ss_pred eecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc-ceeeccccceeEeecCCCcccCccccccccccccchh
Confidence 33468899999976544 44445557899999999998655 788888899999999863 11000 0111123
Q ss_pred hhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCc-------------------eeeeccccCC
Q 041325 298 QTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGH-------------------MVLKGALRGH 358 (450)
Q Consensus 298 ~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~ 358 (450)
..+...+....++.|+|+|..+.+-..|..|+++++.+++.+..++..... +.....+..|
T Consensus 195 y~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~ 274 (558)
T KOG0882|consen 195 YGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKH 274 (558)
T ss_pred hcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhh
Confidence 334445677899999999999999999999999999999876555432211 0011122333
Q ss_pred ccce-EEEEEe--CCeEEEEeCCCeEEEeeCCCC
Q 041325 359 TKAI-LCLAVV--SNLLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 359 ~~~v-~~~~~~--~~~l~s~~~dg~v~iwd~~~~ 389 (450)
...+ +.+.|+ +++|+-|+.=| |++.++.++
T Consensus 275 ~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn 307 (558)
T KOG0882|consen 275 GSTVGTNAVFDESGNFLLYGTILG-IKVINLDTN 307 (558)
T ss_pred cCcccceeEEcCCCCEEEeeccee-EEEEEeecC
Confidence 3332 445555 67888887766 788888764
No 286
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.96 E-value=1.6e-08 Score=92.00 Aligned_cols=255 Identities=10% Similarity=0.048 Sum_probs=161.1
Q ss_pred CCCceEEEEEeCC--eEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecce
Q 041325 126 NGDAVKSLVVLGD--KLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKK 203 (450)
Q Consensus 126 h~~~v~~l~~~~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (450)
......|+.|+.+ .+++||.||.+++..+.+.+....... ......+ ...
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~g-------laa~snL---------------------smN 64 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSG-------LAAASNL---------------------SMN 64 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccc-------ccccccc---------------------chh
Confidence 3457889999843 399999999999999987742110000 0000011 122
Q ss_pred eeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEe-ecccccceEEEEEeecCCcEEEEEcCCCcEEEEe
Q 041325 204 CTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESV-KNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWK 282 (450)
Q Consensus 204 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd 282 (450)
..+.+|...|.-+.|+.+.+.|-+...+|.|.+|-+-.+.-.... ....++-|.+++|+.++. .++....||.|.+=.
T Consensus 65 QtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~-kIcIvYeDGavIVGs 143 (1189)
T KOG2041|consen 65 QTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT-KICIVYEDGAVIVGS 143 (1189)
T ss_pred hhhccCcceEEEEEeccccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc-EEEEEEccCCEEEEe
Confidence 356789999999999999999999999999999998877543332 234567889999987444 566667777776655
Q ss_pred CcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccce
Q 041325 283 KLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI 362 (450)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 362 (450)
++.+.. --+.+++ .....+.|++|.+.++.+-.+|.+++||....-.. .+..+ ........+......|
T Consensus 144 vdGNRI-------wgKeLkg--~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~-Kl~~~-c~Vn~tg~~s~~~~ki 212 (1189)
T KOG2041|consen 144 VDGNRI-------WGKELKG--QLLAHVLWSEDLEQALFKKANGETHLYDNQGNFER-KLEKD-CEVNGTGIFSNFPTKI 212 (1189)
T ss_pred ecccee-------cchhcch--heccceeecccHHHHHhhhcCCcEEEecccccHHH-hhhhc-eEEeeeeeecCCCccc
Confidence 543320 0011111 12346889999999999999999999997632100 00000 0000111122222335
Q ss_pred EEEEEe--------CC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCce
Q 041325 363 LCLAVV--------SN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTS 432 (450)
Q Consensus 363 ~~~~~~--------~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~ 432 (450)
..+.|. |+ .++.+..+|.+.+..-.+. ..++..-. .-.|....|+++|.
T Consensus 213 a~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND-------~~Pvv~dt--gm~~vgakWnh~G~------------ 271 (1189)
T KOG2041|consen 213 AEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSEND-------PEPVVVDT--GMKIVGAKWNHNGA------------ 271 (1189)
T ss_pred cceeeccCccccCCCCCCEEEEEEcCceehhhhhcCC-------CCCeEEec--ccEeecceecCCCc------------
Confidence 566664 12 8999999999998876543 12222222 25688899999998
Q ss_pred EEEEEcccCC
Q 041325 433 FLVYSGSLDC 442 (450)
Q Consensus 433 ~~l~s~~~Dg 442 (450)
+|+.+|.|.
T Consensus 272 -vLAvcG~~~ 280 (1189)
T KOG2041|consen 272 -VLAVCGNDS 280 (1189)
T ss_pred -EEEEccCcc
Confidence 888888653
No 287
>PRK01029 tolB translocation protein TolB; Provisional
Probab=98.94 E-value=4e-07 Score=83.65 Aligned_cols=115 Identities=12% Similarity=0.049 Sum_probs=73.0
Q ss_pred eEEEEEccCCCEEEEEe-CCCcEEEEe--cCC-CeEEEEeecccccceEEEEEeecCCcEEEEEcCC--CcEEEEeCcch
Q 041325 213 VSALALSSDGSLLYSTS-WDRTFKIWR--TSD-FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD--TKIKVWKKLRA 286 (450)
Q Consensus 213 v~~~~~~~~~~~l~~~~-~dg~i~iwd--~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~vwd~~~~ 286 (450)
....+|+|||+.|+..+ .+|...+|. +.. +.....+. .....+....|+|+++.++++...+ ..|.+||+.++
T Consensus 283 ~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt-~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g 361 (428)
T PRK01029 283 QGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLT-KKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATG 361 (428)
T ss_pred cCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEec-cCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 35678999999877665 466555554 432 22333443 3345667889999766455554443 36899998776
Q ss_pred hhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC---CCcEEEEEcCCCc
Q 041325 287 ALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC---DRSILVWERDQGN 337 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~---dg~i~vwd~~~~~ 337 (450)
+. ..+......+....|+|||+.|+.... ...|+++|+..++
T Consensus 362 ~~---------~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~ 406 (428)
T PRK01029 362 RD---------YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKK 406 (428)
T ss_pred Ce---------EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence 51 112112234577899999998875443 3568888887765
No 288
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.92 E-value=2.1e-08 Score=85.00 Aligned_cols=81 Identities=20% Similarity=0.388 Sum_probs=72.6
Q ss_pred eecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc
Q 041325 206 WVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR 285 (450)
Q Consensus 206 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 285 (450)
..+|-+.++.++++||+++++++..|..|++-....--.+..+-.+|..-|..++..+ +..|++++.|++|++||+++
T Consensus 147 ~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~--~~~LlS~sGD~tlr~Wd~~s 224 (390)
T KOG3914|consen 147 ILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD--NYLLLSGSGDKTLRLWDITS 224 (390)
T ss_pred hhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc--CceeeecCCCCcEEEEeccc
Confidence 3479999999999999999999999999999988877778888778999999999984 55699999999999999998
Q ss_pred hhh
Q 041325 286 AAL 288 (450)
Q Consensus 286 ~~~ 288 (450)
++.
T Consensus 225 gk~ 227 (390)
T KOG3914|consen 225 GKL 227 (390)
T ss_pred CCc
Confidence 873
No 289
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.92 E-value=1.5e-06 Score=79.66 Aligned_cols=238 Identities=12% Similarity=0.146 Sum_probs=139.2
Q ss_pred EEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecC-CCc-eEEEEEeCCeEEEEeCCCeEEEEEcCCCce
Q 041325 82 AIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGN-GDA-VKSLVVLGDKLFSAHQDHKIRVWKIDNNTS 159 (450)
Q Consensus 82 ~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~-v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~ 159 (450)
.+.+..+++++.+|.+..+|.++++........... .. +... ... ...+...++.++.++.+|.+..+|.++++.
T Consensus 66 vv~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~--~~-~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~ 142 (394)
T PRK11138 66 AVAYNKVYAADRAGLVKALDADTGKEIWSVDLSEKD--GW-FSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEV 142 (394)
T ss_pred EEECCEEEEECCCCeEEEEECCCCcEeeEEcCCCcc--cc-cccccccccccccEEECCEEEEEcCCCEEEEEECCCCCC
Confidence 346778888888999999999999977664332210 00 0000 001 122445567788899999999999998853
Q ss_pred eEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 041325 160 AYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRT 239 (450)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 239 (450)
....... .. ....++ . .+..++.+..++.+..+|.
T Consensus 143 ~W~~~~~----------------~~-----------------------~~ssP~----v--~~~~v~v~~~~g~l~ald~ 177 (394)
T PRK11138 143 AWQTKVA----------------GE-----------------------ALSRPV----V--SDGLVLVHTSNGMLQALNE 177 (394)
T ss_pred cccccCC----------------Cc-----------------------eecCCE----E--ECCEEEEECCCCEEEEEEc
Confidence 2211110 00 001111 1 1345666778899999999
Q ss_pred CCCeEEEEeeccccc----ceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhh-hhHhh-cc-cceEEEEE
Q 041325 240 SDFRCLESVKNAHDD----AINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLV-QTLEK-HK-SAVTALAL 312 (450)
Q Consensus 240 ~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~-~~-~~i~~l~~ 312 (450)
++|+.+......... ...+-... ++.++.++.+|.+..+|..+++.. +... ..-.+ +. .....+..
T Consensus 178 ~tG~~~W~~~~~~~~~~~~~~~sP~v~---~~~v~~~~~~g~v~a~d~~~G~~~----W~~~~~~~~~~~~~~~~~~~~~ 250 (394)
T PRK11138 178 SDGAVKWTVNLDVPSLTLRGESAPATA---FGGAIVGGDNGRVSAVLMEQGQLI----WQQRISQPTGATEIDRLVDVDT 250 (394)
T ss_pred cCCCEeeeecCCCCcccccCCCCCEEE---CCEEEEEcCCCEEEEEEccCChhh----heeccccCCCccchhcccccCC
Confidence 999988777522110 00111121 235777888899999998877621 1100 00000 00 00111111
Q ss_pred cC--CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCCC
Q 041325 313 ST--DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 313 ~~--~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~ 389 (450)
+| .+..++.++.+|.+..+|..+++.+.... +. ....+...++.++.++.+|.+..+|..++
T Consensus 251 sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~-----------~~----~~~~~~~~~~~vy~~~~~g~l~ald~~tG 314 (394)
T PRK11138 251 TPVVVGGVVYALAYNGNLVALDLRSGQIVWKRE-----------YG----SVNDFAVDGGRIYLVDQNDRVYALDTRGG 314 (394)
T ss_pred CcEEECCEEEEEEcCCeEEEEECCCCCEEEeec-----------CC----CccCcEEECCEEEEEcCCCeEEEEECCCC
Confidence 22 34567778889999999999998664221 11 11234556788888899999999999876
No 290
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=7.6e-08 Score=88.46 Aligned_cols=245 Identities=15% Similarity=0.110 Sum_probs=160.5
Q ss_pred cceEEEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC-----------e---E
Q 041325 76 SYIPSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD-----------K---L 140 (450)
Q Consensus 76 ~~v~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-----------~---l 140 (450)
..-.++.| .+.+||-|+. ..|.|-|..+-+.+.. +..|...|+.+.|.|. . |
T Consensus 16 sN~~A~Dw~~~GLiAygsh-slV~VVDs~s~q~iqs------------ie~h~s~V~~VrWap~~~p~~llS~~~~~lli 82 (1062)
T KOG1912|consen 16 SNRNAADWSPSGLIAYGSH-SLVSVVDSRSLQLIQS------------IELHQSAVTSVRWAPAPSPRDLLSPSSSQLLI 82 (1062)
T ss_pred ccccccccCccceEEEecC-ceEEEEehhhhhhhhc------------cccCccceeEEEeccCCCchhccCccccceeE
Confidence 33556677 5778888876 5788888887776665 5678899999999632 1 7
Q ss_pred EEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc
Q 041325 141 FSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS 220 (450)
Q Consensus 141 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 220 (450)
+++...|.|.+||+.... ....+..|.+++..++|-+
T Consensus 83 AsaD~~GrIil~d~~~~s-------------------------------------------~~~~l~~~~~~~qdl~W~~ 119 (1062)
T KOG1912|consen 83 ASADISGRIILVDFVLAS-------------------------------------------VINWLSHSNDSVQDLCWVP 119 (1062)
T ss_pred EeccccCcEEEEEehhhh-------------------------------------------hhhhhcCCCcchhheeeee
Confidence 777888999999998762 1223346788899999976
Q ss_pred ---CC-CEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhh-------
Q 041325 221 ---DG-SLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQ------- 289 (450)
Q Consensus 221 ---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~------- 289 (450)
+. ..|++-.....|.+|+..+|+...... .......|+.+.|.+...+..-+..|.+.+-+.......
T Consensus 120 ~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~-ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~ 198 (1062)
T KOG1912|consen 120 ARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYD-YSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEF 198 (1062)
T ss_pred ccCcchheeEEecCCcEEEEEEccCCceeeccc-cCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeE
Confidence 33 567777778899999999999988877 445667779999887777777777777776654322110
Q ss_pred -ccccchhhhhHh-------hcccc---------eEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeee
Q 041325 290 -VNKKHSLVQTLE-------KHKSA---------VTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLK 352 (450)
Q Consensus 290 -~~~~~~~~~~~~-------~~~~~---------i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 352 (450)
..........++ .+... ...++|+|.-+.++.......+.++|++-..++. .
T Consensus 199 qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~-----------v 267 (1062)
T KOG1912|consen 199 QITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLA-----------V 267 (1062)
T ss_pred EEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeE-----------E
Confidence 000000000000 00000 1235678876666666677889999998655442 1
Q ss_pred ccccCCccceEEEEEeC--CeEEEEeCCCeEEEeeCCC
Q 041325 353 GALRGHTKAILCLAVVS--NLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 353 ~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~ 388 (450)
..+.....++..+-.++ +.|++.-.||.+.+|-.+.
T Consensus 268 vpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 268 VPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred EEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 12222222334444443 3899999999999997664
No 291
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=1.5e-07 Score=86.95 Aligned_cols=192 Identities=11% Similarity=0.066 Sum_probs=134.2
Q ss_pred CCceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeee
Q 041325 127 GDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTW 206 (450)
Q Consensus 127 ~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (450)
...+.|++++...|+-|..+|.|++.+..... ...
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~---------------------------------------------~~~ 73 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGNP---------------------------------------------KTN 73 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCCcc---------------------------------------------ccc
Confidence 35778888888889999999999999987651 000
Q ss_pred ecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeec----CCcEEEEEcCCCcEEEEe
Q 041325 207 VHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKS----NDGFVYTGSADTKIKVWK 282 (450)
Q Consensus 207 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~~l~~~~~dg~i~vwd 282 (450)
..|+.. ..+|.++++|+.||+|.|-.+.+.+....+. ...++.+++++|+ ..+.+++|+..| +.++.
T Consensus 74 ~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~d--f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~e 144 (846)
T KOG2066|consen 74 FDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQYD--FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSE 144 (846)
T ss_pred cccccc------ccCCceEEEecCCCcEEEeeccCCccceeEe--cCCcceeEEeccchhhhhhhheeecCcce-EEEeh
Confidence 123222 5589999999999999999998888777775 6789999999986 234699999988 77776
Q ss_pred CcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccce
Q 041325 283 KLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI 362 (450)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 362 (450)
-.--. ....+ .+....++|.++.| .|++||-++.+| |+|||+.+++.+.....+..... ...--
T Consensus 145 r~wlg-----nk~~v-~l~~~eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R-------~e~fp 208 (846)
T KOG2066|consen 145 RNWLG-----NKDSV-VLSEGEGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVR-------PELFP 208 (846)
T ss_pred hhhhc-----Cccce-eeecCccceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCC-------cccCC
Confidence 32211 00011 34456789999999 588999998777 99999999887754444431111 11112
Q ss_pred EEEEEeCCeEEEEeCCCeEEEeeCCC
Q 041325 363 LCLAVVSNLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 363 ~~~~~~~~~l~s~~~dg~v~iwd~~~ 388 (450)
..+.|.++..+.-|+.-+|+|..++.
T Consensus 209 phl~W~~~~~LVIGW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 209 PHLHWQDEDRLVIGWGDSVKICSIKK 234 (846)
T ss_pred CceEecCCCeEEEecCCeEEEEEEec
Confidence 45677765333444555788888873
No 292
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.88 E-value=2.6e-09 Score=88.48 Aligned_cols=148 Identities=18% Similarity=0.256 Sum_probs=107.6
Q ss_pred EEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCC
Q 041325 268 FVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSG 347 (450)
Q Consensus 268 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~ 347 (450)
+-++.+.+-.|-+-|++++. .+.+. .++.|.++.|.-.++++..|+.+|.|..+|++.+..-
T Consensus 226 yhfs~G~sqqv~L~nvetg~---------~qsf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG-------- 287 (425)
T KOG2695|consen 226 YHFSVGLSQQVLLTNVETGH---------QQSFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQG-------- 287 (425)
T ss_pred eeecccccceeEEEEeeccc---------ccccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccC--------
Confidence 44666777889999988765 33443 5677888899888899999999999999999975211
Q ss_pred ceeeeccccCCccceEEEE---EeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCC
Q 041325 348 HMVLKGALRGHTKAILCLA---VVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNR 424 (450)
Q Consensus 348 ~~~~~~~~~~~~~~v~~~~---~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 424 (450)
.. .......|...|+++. |++++|++.+.+|.|++||.+.- +..+-+..+.||...-.-+-++-+.+
T Consensus 288 ~~-~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~-----K~~~~V~qYeGHvN~~a~l~~~v~~e---- 357 (425)
T KOG2695|consen 288 NG-WCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRAT-----KCKKSVMQYEGHVNLSAYLPAHVKEE---- 357 (425)
T ss_pred CC-cceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhh-----hcccceeeeecccccccccccccccc----
Confidence 11 1123345788888765 45779999999999999999862 22234888999976554444443322
Q ss_pred CCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 425 NSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 425 ~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+..++++|+|...|||.++
T Consensus 358 -------eg~I~s~GdDcytRiWsl~ 376 (425)
T KOG2695|consen 358 -------EGSIFSVGDDCYTRIWSLD 376 (425)
T ss_pred -------cceEEEccCeeEEEEEecc
Confidence 2278889999999999875
No 293
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.87 E-value=2.1e-09 Score=99.78 Aligned_cols=245 Identities=13% Similarity=0.130 Sum_probs=164.4
Q ss_pred CCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEee
Q 041325 15 KEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGS 92 (450)
Q Consensus 15 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs 92 (450)
+-.+..|.+.....+--|-+.+.....--.+.-.+.+..+........++..++|+ .|....+|++| +.+.|+.|+
T Consensus 1043 f~pH~CPEpk~~~~ap~N~t~Rl~~rel~~~y~gV~g~~~dr~~IFSRFr~w~~fr--d~~~~fTc~afs~~~~hL~vG~ 1120 (1516)
T KOG1832|consen 1043 FHPHVCPEPKRLLEAPLNMTGRLGTRELQSFYSGVHGNRRDRQFIFSRFRSWRSFR--DETALFTCIAFSGGTNHLAVGS 1120 (1516)
T ss_pred cCCccCCChHHHhhcchhhhhcccchhhcCcccccccCcccchhhHhhcccchhhh--ccccceeeEEeecCCceEEeee
Confidence 33444566555555444444443322222233444555666666777788889998 99999999999 689999999
Q ss_pred CCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---EEEEeCCC-eEEEEEcCCCceeEEeccCcc
Q 041325 93 SNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---LFSAHQDH-KIRVWKIDNNTSAYYSTSGKL 168 (450)
Q Consensus 93 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg-~i~iw~~~~~~~~~~~~~~~~ 168 (450)
..|.|+++++.+|..... ...|..+|+-+.-+-++ |.+++... ...+|++.+--.
T Consensus 1121 ~~Geik~~nv~sG~~e~s------------~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~--------- 1179 (1516)
T KOG1832|consen 1121 HAGEIKIFNVSSGSMEES------------VNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGG--------- 1179 (1516)
T ss_pred ccceEEEEEccCcccccc------------ccccccccccccccCCcceeeeeccccCchHHHhccccccC---------
Confidence 999999999999885554 56899999999988665 44444433 577898865310
Q ss_pred cccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEe
Q 041325 169 KNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESV 248 (450)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 248 (450)
.. +.-..-.++.|+.....-+.|+......+||++++..+.++
T Consensus 1180 ------~~-------------------------------Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~ty 1222 (1516)
T KOG1832|consen 1180 ------PR-------------------------------HSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTY 1222 (1516)
T ss_pred ------cc-------------------------------ccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHh
Confidence 00 11124567778775555556666678999999998877664
Q ss_pred ec---ccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC
Q 041325 249 KN---AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD 325 (450)
Q Consensus 249 ~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d 325 (450)
.. .....-++..|+|.+. +++ .|| .+||++..+ .++.|......+ .-.|+|+|..++.-++
T Consensus 1223 lt~~~~~~y~~n~a~FsP~D~-LIl---ndG--vLWDvR~~~--------aIh~FD~ft~~~-~G~FHP~g~eVIINSE- 1286 (1516)
T KOG1832|consen 1223 LTDTVTSSYSNNLAHFSPCDT-LIL---NDG--VLWDVRIPE--------AIHRFDQFTDYG-GGGFHPSGNEVIINSE- 1286 (1516)
T ss_pred cCcchhhhhhccccccCCCcc-eEe---eCc--eeeeeccHH--------HHhhhhhheecc-cccccCCCceEEeech-
Confidence 31 1222337788998554 443 455 489997665 677776554322 3469999999988764
Q ss_pred CcEEEEEcCCCcee
Q 041325 326 RSILVWERDQGNYI 339 (450)
Q Consensus 326 g~i~vwd~~~~~~~ 339 (450)
|||+++-+.+
T Consensus 1287 ----IwD~RTF~lL 1296 (1516)
T KOG1832|consen 1287 ----IWDMRTFKLL 1296 (1516)
T ss_pred ----hhhhHHHHHH
Confidence 8999986654
No 294
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.86 E-value=1.4e-05 Score=68.09 Aligned_cols=217 Identities=16% Similarity=0.132 Sum_probs=134.4
Q ss_pred EEEE---eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe-CCe-EEEEeCCCeEEEEEc
Q 041325 80 SLAI---AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL-GDK-LFSAHQDHKIRVWKI 154 (450)
Q Consensus 80 ~~~~---d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~-l~s~~~dg~i~iw~~ 154 (450)
+..| ++.++++--..+.|..|+..++..... ... ....+++. ++. ++.+..++ +.++|.
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~--------------~~~-~~~G~~~~~~~g~l~v~~~~~-~~~~d~ 67 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVI--------------DLP-GPNGMAFDRPDGRLYVADSGG-IAVVDP 67 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE--------------ESS-SEEEEEEECTTSEEEEEETTC-EEEEET
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEE--------------ecC-CCceEEEEccCCEEEEEEcCc-eEEEec
Confidence 3456 366677777789999999888764332 111 26667776 455 77776655 555588
Q ss_pred CCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCC---
Q 041325 155 DNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWD--- 231 (450)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--- 231 (450)
.+++... +...+... ......+.+++.++|++.++....
T Consensus 68 ~~g~~~~--------------~~~~~~~~------------------------~~~~~~ND~~vd~~G~ly~t~~~~~~~ 109 (246)
T PF08450_consen 68 DTGKVTV--------------LADLPDGG------------------------VPFNRPNDVAVDPDGNLYVTDSGGGGA 109 (246)
T ss_dssp TTTEEEE--------------EEEEETTC------------------------SCTEEEEEEEE-TTS-EEEEEECCBCT
T ss_pred CCCcEEE--------------EeeccCCC------------------------cccCCCceEEEcCCCCEEEEecCCCcc
Confidence 8774311 11110000 023367899999999977776543
Q ss_pred -----CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccc
Q 041325 232 -----RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSA 306 (450)
Q Consensus 232 -----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 306 (450)
|.|..++.. ++...... .....+.|+|+|+++.++++-+..+.|..+++....... ........+....+.
T Consensus 110 ~~~~~g~v~~~~~~-~~~~~~~~--~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~-~~~~~~~~~~~~~g~ 185 (246)
T PF08450_consen 110 SGIDPGSVYRIDPD-GKVTVVAD--GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGEL-SNRRVFIDFPGGPGY 185 (246)
T ss_dssp TCGGSEEEEEEETT-SEEEEEEE--EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCE-EEEEEEEE-SSSSCE
T ss_pred ccccccceEEECCC-CeEEEEec--CcccccceEECCcchheeecccccceeEEEeccccccce-eeeeeEEEcCCCCcC
Confidence 557777777 55444433 456679999999776567788889999999986433100 001112222222235
Q ss_pred eEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe
Q 041325 307 VTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV 368 (450)
Q Consensus 307 i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 368 (450)
.-.+++..+|++.++....+.|.+++.. ++.+ ..+......+++++|.
T Consensus 186 pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~-------------~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 186 PDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLL-------------REIELPVPRPTNCAFG 233 (246)
T ss_dssp EEEEEEBTTS-EEEEEETTTEEEEEETT-SCEE-------------EEEE-SSSSEEEEEEE
T ss_pred CCcceEcCCCCEEEEEcCCCEEEEECCC-ccEE-------------EEEcCCCCCEEEEEEE
Confidence 7889999999988888889999999988 6644 2222223478899996
No 295
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.86 E-value=9.5e-09 Score=59.03 Aligned_cols=38 Identities=26% Similarity=0.650 Sum_probs=36.3
Q ss_pred eeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 398 SCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 398 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
+++..+.+|.+.|++|+|+|++. +|++++.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~-------------~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGN-------------FLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSS-------------EEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccc-------------cceeeCCCCEEEEEC
Confidence 67889999999999999999999 999999999999997
No 296
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.86 E-value=4.8e-08 Score=91.35 Aligned_cols=187 Identities=13% Similarity=0.189 Sum_probs=136.4
Q ss_pred eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEe
Q 041325 84 AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYS 163 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 163 (450)
++..++-|+....+...|+.+.+..+. ..-....|.-++.++..+.+|...|+|.+-|.++.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~------------~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~----- 208 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRT------------TNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFE----- 208 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeee------------eeccCCceEEEEecCcEEEeecccceEEeecCCcCc-----
Confidence 355666777777777778777765554 112223478888888889999999999999998872
Q ss_pred ccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeC---------CCcE
Q 041325 164 TSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSW---------DRTF 234 (450)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i 234 (450)
....+..|++.|.++.. .|++|++++. |..|
T Consensus 209 --------------------------------------~iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~Fv 248 (1118)
T KOG1275|consen 209 --------------------------------------TIHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFV 248 (1118)
T ss_pred --------------------------------------eeeeeeccccceeeeec--cCCeEEEeecccccccccccchh
Confidence 23345579888877655 5888998875 5678
Q ss_pred EEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcC
Q 041325 235 KIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST 314 (450)
Q Consensus 235 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 314 (450)
++||++..+.+..+. -+ ....-+.|+|.-...+++++..|...+-|..+-. ....-+..+....+.+..+.+++
T Consensus 249 kVYDLRmmral~PI~-~~-~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ls----NP~~~~~~v~p~~s~i~~fDiSs 322 (1118)
T KOG1275|consen 249 KVYDLRMMRALSPIQ-FP-YGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLS----NPPAGVKMVNPNGSGISAFDISS 322 (1118)
T ss_pred hhhhhhhhhccCCcc-cc-cCchhhhhcccccceEEEEecccceeeccccccC----CCccceeEEccCCCcceeEEecC
Confidence 999999988877775 23 3336778898878789999999999999843211 11112222333445699999999
Q ss_pred CCCEEEEeeCCCcEEEEEc
Q 041325 315 DGTVLYSGACDRSILVWER 333 (450)
Q Consensus 315 ~~~~l~~g~~dg~i~vwd~ 333 (450)
+++.++.|..+|.|.+|.-
T Consensus 323 n~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 323 NGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CCceEEEecccCcEeeecC
Confidence 9999999999999999983
No 297
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.83 E-value=1.3e-08 Score=84.54 Aligned_cols=124 Identities=15% Similarity=0.249 Sum_probs=97.5
Q ss_pred CCCceEEEEEccCCCEEEEEeCCCcEEEEecCCC-----eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeC
Q 041325 209 HVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDF-----RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKK 283 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 283 (450)
..+.|.++.|...++++..|+.+|.|..+|++.+ .+...+. |...|+++......+.+|++.+.+|.|++||.
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly--h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~ 328 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY--HDSSVTSLQILQFSQQKLMASDMTGKIKLYDL 328 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE--cCcchhhhhhhccccceEeeccCcCceeEeee
Confidence 4456888889988999999999999999999864 4555554 89999999888756778999999999999999
Q ss_pred cchhhhccccchhhhhHhhcccceEEE--EEcCCCCEEEEeeCCCcEEEEEcCCCcee
Q 041325 284 LRAALQVNKKHSLVQTLEKHKSAVTAL--ALSTDGTVLYSGACDRSILVWERDQGNYI 339 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~i~~l--~~~~~~~~l~~g~~dg~i~vwd~~~~~~~ 339 (450)
+.-++. .-+..+.+|-..-.-+ ...+....+++++.|-..+||.++.+..+
T Consensus 329 R~~K~~-----~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl 381 (425)
T KOG2695|consen 329 RATKCK-----KSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLL 381 (425)
T ss_pred hhhhcc-----cceeeeecccccccccccccccccceEEEccCeeEEEEEecccCcee
Confidence 876621 1366666775443333 34456678899999999999999988766
No 298
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.82 E-value=8.4e-08 Score=78.67 Aligned_cols=230 Identities=15% Similarity=0.214 Sum_probs=127.9
Q ss_pred CCCceEEEEEeCC--eEEEEeCCCeEEEEEcCCCcee-E-EeccCcccccceeeeeeccCCCcceeEeeecCceEEEeec
Q 041325 126 NGDAVKSLVVLGD--KLFSAHQDHKIRVWKIDNNTSA-Y-YSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRH 201 (450)
Q Consensus 126 h~~~v~~l~~~~~--~l~s~~~dg~i~iw~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (450)
....|+++.|... +|++|...|.|.++.-+..... + +..+-+.....+..+..+
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSl---------------------- 82 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSL---------------------- 82 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhc----------------------
Confidence 3457899999754 4888888899999976654210 0 000000000000111111
Q ss_pred ceeeeecCCCceEEEEEccCC--CEEEEEeCCCcEEEEecCCCe------------------------------------
Q 041325 202 KKCTWVHHVDTVSALALSSDG--SLLYSTSWDRTFKIWRTSDFR------------------------------------ 243 (450)
Q Consensus 202 ~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~------------------------------------ 243 (450)
.-...|..+.|..++ ..++..+.|.+|++|.+....
T Consensus 83 ------eieEKin~I~w~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd 156 (460)
T COG5170 83 ------EIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHD 156 (460)
T ss_pred ------cHHHHhhheeeecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccc
Confidence 122357778886643 456777789999999875420
Q ss_pred ------EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCC-C
Q 041325 244 ------CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTD-G 316 (450)
Q Consensus 244 ------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~ 316 (450)
+.+.....|..-++++.++. +...+....|-.|.+|++.-.......-......+.....-|++..|+|. .
T Consensus 157 ~iiaa~p~rvyaNaH~yhiNSiS~Ns--D~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~c 234 (460)
T COG5170 157 EIIAAKPCRVYANAHPYHINSISFNS--DKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMC 234 (460)
T ss_pred eEEEeccceeccccceeEeeeeeecC--chheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHc
Confidence 00111135667788888885 33344455677899998765331111101111223333456888999994 4
Q ss_pred CEEEEeeCCCcEEEEEcCCCcee------eeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCC
Q 041325 317 TVLYSGACDRSILVWERDQGNYI------VDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 317 ~~l~~g~~dg~i~vwd~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~ 388 (450)
+.+.-.+..|.|++-|++..... .+...+. .-..-+.+-...|..+.|+++ ++++-+ =-+|++||++.
T Consensus 235 n~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~---v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm 310 (460)
T COG5170 235 NVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDG---VDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNM 310 (460)
T ss_pred ceEEEecCCCcEEehhhhhhhhccCchhhhhhccCc---ccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEeccc
Confidence 56667778999999999854321 0000000 001112223356777888744 666544 35799999986
Q ss_pred C
Q 041325 389 S 389 (450)
Q Consensus 389 ~ 389 (450)
.
T Consensus 311 ~ 311 (460)
T COG5170 311 A 311 (460)
T ss_pred c
Confidence 4
No 299
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.80 E-value=4.6e-06 Score=70.81 Aligned_cols=222 Identities=14% Similarity=0.156 Sum_probs=128.0
Q ss_pred CCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEE-eCCeEEEEeCCCeEEEEEcCCCceeEEeccCccccc
Q 041325 93 SNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVV-LGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNK 171 (450)
Q Consensus 93 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 171 (450)
.+|+|..||..+++.+....... ... ...+... .++.+++++.++.|..||..+++........
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~---------~~~-~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~----- 65 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGP---------GIG-GPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLP----- 65 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSS---------SCS-SEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECS-----
T ss_pred CCCEEEEEECCCCCEEEEEECCC---------CCC-CccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecc-----
Confidence 36899999999998777633211 122 2222233 5666888899999999999988432211110
Q ss_pred ceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecc
Q 041325 172 YYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNA 251 (450)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 251 (450)
+.+.... ..++..++.++.++.|..+|..+|+.+......
T Consensus 66 ---------------------------------------~~~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~ 105 (238)
T PF13360_consen 66 ---------------------------------------GPISGAP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLT 105 (238)
T ss_dssp ---------------------------------------SCGGSGE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-
T ss_pred ---------------------------------------cccccee-eecccccccccceeeeEecccCCcceeeeeccc
Confidence 0000001 123556677778889999999999998884212
Q ss_pred cc-----cceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhh---cccceEEEEEcCCCCEEEEee
Q 041325 252 HD-----DAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEK---HKSAVTALALSTDGTVLYSGA 323 (450)
Q Consensus 252 ~~-----~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~---~~~~i~~l~~~~~~~~l~~g~ 323 (450)
.. .......+. ++.++.+..++.|..+|+++++..-....... .... ....+..-....++ .++.++
T Consensus 106 ~~~~~~~~~~~~~~~~---~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~v~~~~ 180 (238)
T PF13360_consen 106 SSPPAGVRSSSSPAVD---GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP-RGSSPISSFSDINGSPVISDG-RVYVSS 180 (238)
T ss_dssp SSCTCSTB--SEEEEE---TTEEEEEETCSEEEEEETTTTEEEEEEESSTT--SS--EEEETTEEEEEECCTT-EEEEEC
T ss_pred cccccccccccCceEe---cCEEEEEeccCcEEEEecCCCcEEEEeecCCC-CCCcceeeecccccceEEECC-EEEEEc
Confidence 11 112223332 44777888899999999988872111100000 0000 00111222222244 777777
Q ss_pred CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEE-EEEeCCeEEEEeCCCeEEEeeCCCC
Q 041325 324 CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILC-LAVVSNLLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 324 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~l~s~~~dg~v~iwd~~~~ 389 (450)
.++.+..+|+.+++.+. ... ...+.. ....++.|+.++.++.|..||++++
T Consensus 181 ~~g~~~~~d~~tg~~~w-------------~~~--~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 181 GDGRVVAVDLATGEKLW-------------SKP--ISGIYSLPSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp CTSSEEEEETTTTEEEE-------------EEC--SS-ECECEECCCTEEEEEETTTEEEEEETTTT
T ss_pred CCCeEEEEECCCCCEEE-------------Eec--CCCccCCceeeCCEEEEEeCCCEEEEEECCCC
Confidence 78864444999887441 111 111333 4556778888889999999999986
No 300
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.80 E-value=2.1e-08 Score=57.59 Aligned_cols=37 Identities=46% Similarity=0.832 Sum_probs=34.6
Q ss_pred ceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEec
Q 041325 63 HQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWN 101 (450)
Q Consensus 63 ~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~ 101 (450)
++++++++ +|.+.|++|+| ++++|++|+.|+.|++||
T Consensus 1 g~~~~~~~--~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFR--GHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEE--SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEc--CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46888999 99999999999 789999999999999997
No 301
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=98.79 E-value=5.4e-05 Score=64.17 Aligned_cols=266 Identities=16% Similarity=0.197 Sum_probs=152.1
Q ss_pred CCCcceEEEEE--eCCEEEEeeCC---CcEEEecCCC--CCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEE
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSN---GEIRAWNRDP--NNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSA 143 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~d---g~v~vw~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~ 143 (450)
.+.+..+-|++ +++.|.++-.+ |.|-.+.++. +.+....... ..++ +-..+++++++ ++++
T Consensus 37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~--------~~g~--~p~yvsvd~~g~~vf~A 106 (346)
T COG2706 37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQT--------LPGS--PPCYVSVDEDGRFVFVA 106 (346)
T ss_pred cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccc--------cCCC--CCeEEEECCCCCEEEEE
Confidence 45666777788 57788887554 6777776654 5544442221 1122 33677777666 5555
Q ss_pred eC-CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCC
Q 041325 144 HQ-DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDG 222 (450)
Q Consensus 144 ~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 222 (450)
.. -|.|.++.++..-... ..+..+..... . ........-+....+.|++
T Consensus 107 nY~~g~v~v~p~~~dG~l~------------~~v~~~~h~g~-----------------~-p~~rQ~~~h~H~a~~tP~~ 156 (346)
T COG2706 107 NYHSGSVSVYPLQADGSLQ------------PVVQVVKHTGS-----------------G-PHERQESPHVHSANFTPDG 156 (346)
T ss_pred EccCceEEEEEcccCCccc------------cceeeeecCCC-----------------C-CCccccCCccceeeeCCCC
Confidence 44 5889999986641100 00000000000 0 0000011127788999999
Q ss_pred CEEEEEeC-CCcEEEEecCCCeEEEEe--ecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhh
Q 041325 223 SLLYSTSW-DRTFKIWRTSDFRCLESV--KNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQT 299 (450)
Q Consensus 223 ~~l~~~~~-dg~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 299 (450)
+++++... --.|.+|++.+++....- ..........|.|+|+.+-..++.--+++|.+|........ ....+.+..
T Consensus 157 ~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~-~~~lQ~i~t 235 (346)
T COG2706 157 RYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK-FEELQTIDT 235 (346)
T ss_pred CEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce-EEEeeeecc
Confidence 99988763 347999999987643322 11345667999999966644666777999999998764200 011111111
Q ss_pred Hh---hcccceEEEEEcCCCCEEEEeeC-CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEE--eCCeEE
Q 041325 300 LE---KHKSAVTALALSTDGTVLYSGAC-DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV--VSNLLF 373 (450)
Q Consensus 300 ~~---~~~~~i~~l~~~~~~~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~ 373 (450)
+. ........|..++||++|.++.. ...|.+|.+.... +..........+...-..+.+ ++++|+
T Consensus 236 lP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~---------g~L~~~~~~~teg~~PR~F~i~~~g~~Li 306 (346)
T COG2706 236 LPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDG---------GKLELVGITPTEGQFPRDFNINPSGRFLI 306 (346)
T ss_pred CccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCC---------CEEEEEEEeccCCcCCccceeCCCCCEEE
Confidence 11 13456788999999999998754 2367777765321 112222222223332344444 467777
Q ss_pred EEeCC-CeEEEeeCCC
Q 041325 374 SGSSD-NTIRIWRRSS 388 (450)
Q Consensus 374 s~~~d-g~v~iwd~~~ 388 (450)
++..+ ..|.+|.+..
T Consensus 307 aa~q~sd~i~vf~~d~ 322 (346)
T COG2706 307 AANQKSDNITVFERDK 322 (346)
T ss_pred EEccCCCcEEEEEEcC
Confidence 77665 5688888764
No 302
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.77 E-value=3.3e-06 Score=71.67 Aligned_cols=194 Identities=15% Similarity=0.192 Sum_probs=110.5
Q ss_pred CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchh-hhh
Q 041325 221 DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSL-VQT 299 (450)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~ 299 (450)
++..+++++.++.|..||..+|+.+..+.. ...+...... .++.++++..++.++.+|..+++. .+.. ...
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~--~~~~~~~~~~--~~~~v~v~~~~~~l~~~d~~tG~~----~W~~~~~~ 106 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL--PGPISGAPVV--DGGRVYVGTSDGSLYALDAKTGKV----LWSIYLTS 106 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC--SSCGGSGEEE--ETTEEEEEETTSEEEEEETTTSCE----EEEEEE-S
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec--cccccceeee--cccccccccceeeeEecccCCcce----eeeecccc
Confidence 466777778999999999999999888773 2221111122 344667777888999999888872 2211 111
Q ss_pred HhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCC
Q 041325 300 LEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDN 379 (450)
Q Consensus 300 ~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg 379 (450)
..... .........+++.++++..++.|..+|.++|+.+........... ..+.........+.+.++.++.++.++
T Consensus 107 ~~~~~-~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~~g 183 (238)
T PF13360_consen 107 SPPAG-VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS--SPISSFSDINGSPVISDGRVYVSSGDG 183 (238)
T ss_dssp SCTCS-TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS----EEEETTEEEEEECCTTEEEEECCTS
T ss_pred ccccc-cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC--cceeeecccccceEEECCEEEEEcCCC
Confidence 01111 112222222478888898899999999999987743222110000 000000011133334455777788788
Q ss_pred e-EEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 380 T-IRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 380 ~-v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
. +.+ |+.++ +.+.... ...+..+ ...++. .|+.++.|+.|..||++
T Consensus 184 ~~~~~-d~~tg--------~~~w~~~--~~~~~~~-~~~~~~-------------~l~~~~~~~~l~~~d~~ 230 (238)
T PF13360_consen 184 RVVAV-DLATG--------EKLWSKP--ISGIYSL-PSVDGG-------------TLYVTSSDGRLYALDLK 230 (238)
T ss_dssp SEEEE-ETTTT--------EEEEEEC--SS-ECEC-EECCCT-------------EEEEEETTTEEEEEETT
T ss_pred eEEEE-ECCCC--------CEEEEec--CCCccCC-ceeeCC-------------EEEEEeCCCEEEEEECC
Confidence 5 555 98875 2222222 1222221 334455 67777799999999974
No 303
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.76 E-value=2.6e-06 Score=69.66 Aligned_cols=201 Identities=18% Similarity=0.188 Sum_probs=112.1
Q ss_pred eEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--------EEEEeCCC
Q 041325 78 IPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--------LFSAHQDH 147 (450)
Q Consensus 78 v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--------l~s~~~dg 147 (450)
=+.++| |+.+||.+...|+|+++|+....+-.+...... ...-..+|..+.|.+.. |+.-..+|
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~------~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G 119 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSF------PGDLSDAIAGLIFLEYKKSAQWSYELLVINYRG 119 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCccccc------CCccccceeeeEeeccccccccceeEEEEeccc
Confidence 345667 899999999999999999987654433221110 11224567777775322 77777788
Q ss_pred eEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeee-ecCCCceEEEEEccCCCEEE
Q 041325 148 KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTW-VHHVDTVSALALSSDGSLLY 226 (450)
Q Consensus 148 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~ 226 (450)
.++-|-+..++...+ ... ....+ ..+...|.++.++|..++|+
T Consensus 120 ~L~Sy~vs~gt~q~y-----------~e~-------------------------hsfsf~~~yp~Gi~~~vy~p~h~LLl 163 (282)
T PF15492_consen 120 QLRSYLVSVGTNQGY-----------QEN-------------------------HSFSFSSHYPHGINSAVYHPKHRLLL 163 (282)
T ss_pred eeeeEEEEcccCCcc-----------eee-------------------------EEEEecccCCCceeEEEEcCCCCEEE
Confidence 888777643311000 000 01111 13577899999999988888
Q ss_pred EEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcE-EEEEcCCCc------EEEEeCcchhhhccccchhhhh
Q 041325 227 STSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGF-VYTGSADTK------IKVWKKLRAALQVNKKHSLVQT 299 (450)
Q Consensus 227 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-l~~~~~dg~------i~vwd~~~~~~~~~~~~~~~~~ 299 (450)
+|+.... +++. -. .....+++-........+ .++...|+. ..+|.+-+.+ ....
T Consensus 164 VgG~~~~------~~~~----s~-a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~--------~fs~ 224 (282)
T PF15492_consen 164 VGGCEQN------QDGM----SK-ASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFK--------FFSR 224 (282)
T ss_pred EeccCCC------CCcc----cc-ccccCceEEEEcCCCCcEEEccccCccccccccccceeecccee--------eeec
Confidence 7764322 0000 00 112222222222111111 122222211 1222221111 1111
Q ss_pred HhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCcee
Q 041325 300 LEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYI 339 (450)
Q Consensus 300 ~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~ 339 (450)
.......|..|..+|||+.|++.+.+|.|.+|++.+-+..
T Consensus 225 ~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 225 QGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred cccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence 1234678999999999999999999999999999876544
No 304
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.72 E-value=3.1e-07 Score=86.10 Aligned_cols=183 Identities=9% Similarity=0.141 Sum_probs=130.9
Q ss_pred CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhH
Q 041325 221 DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTL 300 (450)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 300 (450)
++..++-|+....+..+|+++.+..+... -....|.-++. ++..+.+|...|+|.+-|.++.+ .+.++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~-v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~--------~iht~ 213 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTN-VSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFE--------TIHTF 213 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeee-ccCCceEEEEe---cCcEEEeecccceEEeecCCcCc--------eeeee
Confidence 45567788888889999999887766654 22334555555 45589999999999999997665 88999
Q ss_pred hhcccceEEEEEcCCCCEEEEeeC---------CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--
Q 041325 301 EKHKSAVTALALSTDGTVLYSGAC---------DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS-- 369 (450)
Q Consensus 301 ~~~~~~i~~l~~~~~~~~l~~g~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-- 369 (450)
..|.+.|..+.. .|++|++++. |.-|+|||++..+.+. .+.-+.++ .-+.|.|
T Consensus 214 ~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~-------------PI~~~~~P-~flrf~Psl 277 (1118)
T KOG1275|consen 214 DAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS-------------PIQFPYGP-QFLRFHPSL 277 (1118)
T ss_pred eccccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccC-------------CcccccCc-hhhhhcccc
Confidence 999999987666 6889998875 5668999999876551 22222222 2233443
Q ss_pred -CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 370 -NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 370 -~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
..++.++..|...+-|..+- ..+...+.....-...+..+.++++++ .|+-|..+|.|.+|.
T Consensus 278 ~t~~~V~S~sGq~q~vd~~~l----sNP~~~~~~v~p~~s~i~~fDiSsn~~-------------alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 278 TTRLAVTSQSGQFQFVDTATL----SNPPAGVKMVNPNGSGISAFDISSNGD-------------ALAFGDHEGHVNLWA 340 (1118)
T ss_pred cceEEEEecccceeecccccc----CCCccceeEEccCCCcceeEEecCCCc-------------eEEEecccCcEeeec
Confidence 47888999999999884431 111122233333345599999999999 999999999999994
No 305
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.68 E-value=1.6e-05 Score=73.01 Aligned_cols=157 Identities=13% Similarity=0.175 Sum_probs=101.1
Q ss_pred ceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEc
Q 041325 77 YIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKI 154 (450)
Q Consensus 77 ~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~ 154 (450)
..+|++..+++++.|+.-|.+++++...++...... .+-.+.+..+..+++. ++.|+..|.|.++.+
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~-----------~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql 105 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKN-----------EGATGITCVRSVSSVEYLVAAGTASGRVSVFQL 105 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEecCchhhhcccc-----------cCccceEEEEEecchhHhhhhhcCCceEEeehh
Confidence 466777789999999999999999988877554411 1222344444555443 778888899999988
Q ss_pred CCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcE
Q 041325 155 DNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTF 234 (450)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 234 (450)
+..... ....+. ... ..|...|++++|++++..+++|...|+|
T Consensus 106 ~~~~p~--------------~~~~~t-------------------~~d----~~~~~rVTal~Ws~~~~k~ysGD~~Gkv 148 (726)
T KOG3621|consen 106 NKELPR--------------DLDYVT-------------------PCD----KSHKCRVTALEWSKNGMKLYSGDSQGKV 148 (726)
T ss_pred hccCCC--------------cceeec-------------------ccc----ccCCceEEEEEecccccEEeecCCCceE
Confidence 765210 000000 000 1278899999999999999999999999
Q ss_pred EEEecCCC----eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcch
Q 041325 235 KIWRTSDF----RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 235 ~iwd~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 286 (450)
.+-.+... -..+.+. ...+.|..+... .. +|++++.-. -.+++.+.+
T Consensus 149 ~~~~L~s~~~~~~~~q~il-~~ds~IVQlD~~--q~-~LLVStl~r-~~Lc~tE~e 199 (726)
T KOG3621|consen 149 VLTELDSRQAFLSKSQEIL-SEDSEIVQLDYL--QS-YLLVSTLTR-CILCQTEAE 199 (726)
T ss_pred EEEEechhhhhccccceee-ccCcceEEeecc--cc-eehHhhhhh-hheeecchh
Confidence 99888762 1112222 355677777776 34 444443333 345555443
No 306
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.68 E-value=2.5e-05 Score=69.67 Aligned_cols=306 Identities=11% Similarity=0.102 Sum_probs=164.2
Q ss_pred eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeC-----------CCeEE
Q 041325 84 AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQ-----------DHKIR 150 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~-----------dg~i~ 150 (450)
-|.||+|--..| |.+|--.+-..... ..|. .|.-+.|+|.. |+|-+. ...++
T Consensus 221 ~GTYL~t~Hk~G-I~lWGG~~f~r~~R-------------F~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~ 285 (698)
T KOG2314|consen 221 KGTYLVTFHKQG-IALWGGESFDRIQR-------------FYHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLI 285 (698)
T ss_pred CceEEEEEeccc-eeeecCccHHHHHh-------------ccCC-CceeeecCCccceEEEecCCccccCcccCCCceEE
Confidence 477888877655 77886444332221 2343 78888898776 776542 25799
Q ss_pred EEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeec----CCCceEEEEEccCCCEEE
Q 041325 151 VWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVH----HVDTVSALALSSDGSLLY 226 (450)
Q Consensus 151 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~ 226 (450)
|||+.++........-..+... -.+..-+ .++.+.+.... +.+.+...+...+.. ....|....|+|.+++||
T Consensus 286 IWDI~tG~lkrsF~~~~~~~~~-WP~frWS-~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llA 362 (698)
T KOG2314|consen 286 IWDIATGLLKRSFPVIKSPYLK-WPIFRWS-HDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLA 362 (698)
T ss_pred EEEccccchhcceeccCCCccc-cceEEec-cCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEE
Confidence 9999999553322221110000 0111111 22333333333 344444444333322 234688889999988776
Q ss_pred EEeC-----CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEE----------EcCCCcEEEEeCcchhhhcc
Q 041325 227 STSW-----DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYT----------GSADTKIKVWKKLRAALQVN 291 (450)
Q Consensus 227 ~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~----------~~~dg~i~vwd~~~~~~~~~ 291 (450)
-=.. -.++.+..+.+++.++.-. -+.-.=..+-|..+++ +|+. .+.-..+-|+.++...
T Consensus 363 Ywtpe~~~~parvtL~evPs~~~iRt~n-lfnVsDckLhWQk~gd-yLcvkvdR~tK~~~~g~f~n~eIfrireKd---- 436 (698)
T KOG2314|consen 363 YWTPETNNIPARVTLMEVPSKREIRTKN-LFNVSDCKLHWQKSGD-YLCVKVDRHTKSKVKGQFSNLEIFRIREKD---- 436 (698)
T ss_pred EEcccccCCcceEEEEecCccceeeecc-ceeeeccEEEeccCCc-EEEEEEEeeccccccceEeeEEEEEeeccC----
Confidence 4321 2346666777666665543 2221112233333222 2221 1122245566665443
Q ss_pred ccchhhhhHhhcccceEEEEEcCCCCEEEEeeC---CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe
Q 041325 292 KKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC---DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV 368 (450)
Q Consensus 292 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 368 (450)
.++... .....|...+|-|.|+.+++-+. ..++.+|.+++.. ....+...+.. ...+.+.|+
T Consensus 437 ---Ipve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~---------~~~~lVk~~dk--~~~N~vfws 501 (698)
T KOG2314|consen 437 ---IPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI---------KKPSLVKELDK--KFANTVFWS 501 (698)
T ss_pred ---CCceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCC---------Cchhhhhhhcc--cccceEEEc
Confidence 122222 34577888999999998877554 3568888877421 11122233322 344667777
Q ss_pred C--CeEEE---EeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEccc---
Q 041325 369 S--NLLFS---GSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSL--- 440 (450)
Q Consensus 369 ~--~~l~s---~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~--- 440 (450)
| .+++. +|..|.+.++|.... .+...-.......+.+.|.|.|+ |++|++.
T Consensus 502 PkG~fvvva~l~s~~g~l~F~D~~~a--------~~k~~~~~eh~~at~veWDPtGR-------------YvvT~ss~wr 560 (698)
T KOG2314|consen 502 PKGRFVVVAALVSRRGDLEFYDTDYA--------DLKDTASPEHFAATEVEWDPTGR-------------YVVTSSSSWR 560 (698)
T ss_pred CCCcEEEEEEecccccceEEEecchh--------hhhhccCccccccccceECCCCC-------------EEEEeeehhh
Confidence 4 44443 345788999998731 11111111223467899999999 8888874
Q ss_pred ---CCcEEEEEe
Q 041325 441 ---DCEIKIWQI 449 (450)
Q Consensus 441 ---Dg~i~iw~l 449 (450)
|.--+||++
T Consensus 561 hk~d~GYri~tf 572 (698)
T KOG2314|consen 561 HKVDNGYRIFTF 572 (698)
T ss_pred hccccceEEEEe
Confidence 444566665
No 307
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.65 E-value=8.5e-06 Score=71.18 Aligned_cols=121 Identities=12% Similarity=0.026 Sum_probs=94.9
Q ss_pred cCCCceEEEEEccCCCEEEEEeCCC-cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcch
Q 041325 208 HHVDTVSALALSSDGSLLYSTSWDR-TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 286 (450)
+|.+.|.-..+..+++-++.|..|| .+-|+|..+++..... ..-+.|.++..++++. +++++.....+.++|+.++
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e--~~lg~I~av~vs~dGK-~~vvaNdr~el~vididng 433 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE--KDLGNIEAVKVSPDGK-KVVVANDRFELWVIDIDNG 433 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee--CCccceEEEEEcCCCc-EEEEEcCceEEEEEEecCC
Confidence 4666788777877888899999999 8999999987754443 4678999999998444 7888888899999999887
Q ss_pred hhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCC----cEEEEEcCCCcee
Q 041325 287 ALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDR----SILVWERDQGNYI 339 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg----~i~vwd~~~~~~~ 339 (450)
. ....-+...+-|+...|+|++++||-+--+| .|+++|+..++..
T Consensus 434 n--------v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy 482 (668)
T COG4946 434 N--------VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY 482 (668)
T ss_pred C--------eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE
Confidence 6 2222223457799999999999999887665 6899999887653
No 308
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.61 E-value=0.00014 Score=58.93 Aligned_cols=140 Identities=18% Similarity=0.259 Sum_probs=89.7
Q ss_pred CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEE-eCCeEEEEeCCCeEEEEEcCCCceeEEe
Q 041325 85 GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVV-LGDKLFSAHQDHKIRVWKIDNNTSAYYS 163 (450)
Q Consensus 85 ~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 163 (450)
..+++.|+..|.+..-|..+++...... -...|.+-+. .+|.++.|+..|.+++.+..++....
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i-------------lg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w-- 87 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-------------LGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIW-- 87 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh-------------hCceeeeeeEEECCEEEEEEccCcEEEEEecchhhee--
Confidence 5778888888999988998888766511 1123332222 47789999999999999999983211
Q ss_pred ccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceE-EEEEccCCCEEEEEeCCCcEEEEecCCC
Q 041325 164 TSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVS-ALALSSDGSLLYSTSWDRTFKIWRTSDF 242 (450)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 242 (450)
.+. -.+.|. .....+++.++..|+.|+.....|.++.
T Consensus 88 --------------~f~----------------------------~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~ 125 (354)
T KOG4649|consen 88 --------------NFV----------------------------ILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTY 125 (354)
T ss_pred --------------eee----------------------------ehhhhccceEEcCCCceEEEecCCCcEEEeccccc
Confidence 110 000121 2335678999999999999999999999
Q ss_pred eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeC
Q 041325 243 RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKK 283 (450)
Q Consensus 243 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 283 (450)
.++...+- ..+--.+-+..+ .++.|..+...|.+.--..
T Consensus 126 ~cVykskc-gG~~f~sP~i~~-g~~sly~a~t~G~vlavt~ 164 (354)
T KOG4649|consen 126 GCVYKSKC-GGGTFVSPVIAP-GDGSLYAAITAGAVLAVTK 164 (354)
T ss_pred ceEEeccc-CCceeccceecC-CCceEEEEeccceEEEEcc
Confidence 88887662 222222233444 3445555555565554443
No 309
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=1e-06 Score=76.20 Aligned_cols=218 Identities=15% Similarity=0.092 Sum_probs=143.4
Q ss_pred cCCCceEEEEEe-CCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecce
Q 041325 125 GNGDAVKSLVVL-GDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKK 203 (450)
Q Consensus 125 ~h~~~v~~l~~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (450)
.|.+.|+.+... .+.+++++.||.++.|.-..-... + -.
T Consensus 7 mhrd~i~hv~~tka~fiiqASlDGh~KFWkKs~isGv-------------E---------------------------fV 46 (558)
T KOG0882|consen 7 MHRDVITHVFPTKAKFIIQASLDGHKKFWKKSRISGV-------------E---------------------------FV 46 (558)
T ss_pred cccceeeeEeeehhheEEeeecchhhhhcCCCCccce-------------e---------------------------eh
Confidence 577778777766 455999999999999986542110 1 11
Q ss_pred eeeecCCCceEEEEEccCCCEEEEEeC-CCcEEEEecCCCeEEEEeecccccceEEEEEeecCC----cEEEEEcCCCcE
Q 041325 204 CTWVHHVDTVSALALSSDGSLLYSTSW-DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSND----GFVYTGSADTKI 278 (450)
Q Consensus 204 ~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~l~~~~~dg~i 278 (450)
..+..|...+.+++.+-++.++.+.+. |..++++|+++...+.-++. ......+.|....+ .+.++...+|.+
T Consensus 47 KhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL--~~lPg~a~wv~skGd~~s~IAVs~~~sg~i 124 (558)
T KOG0882|consen 47 KHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKL--VDLPGFAEWVTSKGDKISLIAVSLFKSGKI 124 (558)
T ss_pred hhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhccc--ccCCCceEEecCCCCeeeeEEeecccCCCc
Confidence 122357778899999999999999887 99999999998776654441 12222233332122 123444567899
Q ss_pred EEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCC-Cceee-eCCCCCCceeeecccc
Q 041325 279 KVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQ-GNYIV-DGDDDSGHMVLKGALR 356 (450)
Q Consensus 279 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~-~~~~~-~~~~~~~~~~~~~~~~ 356 (450)
.++|-....+ +....-.-|..+|..+.+++-+..+++....|.|.-|.... -+... ...-+.........+.
T Consensus 125 ~VvD~~~d~~------q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~ 198 (558)
T KOG0882|consen 125 FVVDGFGDFC------QDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFP 198 (558)
T ss_pred EEECCcCCcC------ccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhccc
Confidence 9999755432 23334455889999999999999999999999999999873 11000 0000001111112233
Q ss_pred CCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCc
Q 041325 357 GHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSV 390 (450)
Q Consensus 357 ~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~ 390 (450)
.......++.++ +..+.+-+.|..|+++++.++.
T Consensus 199 K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 199 KAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred ccccCccceEEccccCcccccCcccEEEEEEeccch
Confidence 344556777777 5588888999999999998864
No 310
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.56 E-value=3e-06 Score=78.75 Aligned_cols=190 Identities=14% Similarity=0.149 Sum_probs=122.0
Q ss_pred CcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEc
Q 041325 75 SSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKI 154 (450)
Q Consensus 75 ~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~ 154 (450)
...++|+++.+++|+-|+.+|.|++.+.+..... ...|... ...+.++++|+.||+|.|-.+
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~~~--------------~~~~s~~----~~~Gey~asCS~DGkv~I~sl 100 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGNPKT--------------NFDHSSS----ILEGEYVASCSDDGKVVIGSL 100 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCCcccc--------------ccccccc----ccCCceEEEecCCCcEEEeec
Confidence 5678889999999999999999999987654311 1133222 233556999999999999988
Q ss_pred CCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC-----CCEEEEEe
Q 041325 155 DNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD-----GSLLYSTS 229 (450)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~~ 229 (450)
-+.+. .... ....++.+++++|+ .+.+++|+
T Consensus 101 ~~~~~----------------~~~~----------------------------df~rpiksial~Pd~~~~~sk~fv~GG 136 (846)
T KOG2066|consen 101 FTDDE----------------ITQY----------------------------DFKRPIKSIALHPDFSRQQSKQFVSGG 136 (846)
T ss_pred cCCcc----------------ceeE----------------------------ecCCcceeEEeccchhhhhhhheeecC
Confidence 77632 1111 23447899999997 56799999
Q ss_pred CCCcEEEEecCCC-eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceE
Q 041325 230 WDRTFKIWRTSDF-RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVT 308 (450)
Q Consensus 230 ~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 308 (450)
..| +.++.-+=. ...........++|.++.|. +++++=+..+| |++||+..++....-.+.. ... ....-..
T Consensus 137 ~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~---g~lIAWand~G-v~vyd~~~~~~l~~i~~p~-~~~-R~e~fpp 209 (846)
T KOG2066|consen 137 MAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR---GNLIAWANDDG-VKVYDTPTRQRLTNIPPPS-QSV-RPELFPP 209 (846)
T ss_pred cce-EEEehhhhhcCccceeeecCccceEEEEec---CcEEEEecCCC-cEEEeccccceeeccCCCC-CCC-CcccCCC
Confidence 888 777653211 11111222677999999997 44666666665 9999987765221111111 111 1122235
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEEcCC
Q 041325 309 ALALSTDGTVLYSGACDRSILVWERDQ 335 (450)
Q Consensus 309 ~l~~~~~~~~l~~g~~dg~i~vwd~~~ 335 (450)
.+.|.++. .|+.|= .-+|+|..++.
T Consensus 210 hl~W~~~~-~LVIGW-~d~v~i~~I~~ 234 (846)
T KOG2066|consen 210 HLHWQDED-RLVIGW-GDSVKICSIKK 234 (846)
T ss_pred ceEecCCC-eEEEec-CCeEEEEEEec
Confidence 67888654 455554 44688888873
No 311
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=4.3e-06 Score=71.35 Aligned_cols=89 Identities=19% Similarity=0.214 Sum_probs=70.6
Q ss_pred cCCCCCccceeeeEEeecCCCcceEEEEE---eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceE
Q 041325 55 KQAPAASEHQCSATLKVKGNSSYIPSLAI---AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVK 131 (450)
Q Consensus 55 ~~~~~~~~~~~~~~l~~~~h~~~v~~~~~---d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 131 (450)
.+.....+....+.+. +|...|..++| +..++..++.+..|+|.|+++...+.. +..| ..++
T Consensus 175 v~~l~~~~fkssq~lp--~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss------------y~a~-~~~w 239 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILP--GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS------------YIAY-NQIW 239 (463)
T ss_pred eEEeccCCcchhhccc--ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh------------eecc-CCce
Confidence 4444455555566555 99999999999 345788999999999999999876665 4556 6999
Q ss_pred EEEEeCCe---EEEEeCCCeEEEEEcCCCc
Q 041325 132 SLVVLGDK---LFSAHQDHKIRVWKIDNNT 158 (450)
Q Consensus 132 ~l~~~~~~---l~s~~~dg~i~iw~~~~~~ 158 (450)
+++|.-+. ++.|..+|.|.+||++..+
T Consensus 240 SC~wDlde~h~IYaGl~nG~VlvyD~R~~~ 269 (463)
T KOG1645|consen 240 SCCWDLDERHVIYAGLQNGMVLVYDMRQPE 269 (463)
T ss_pred eeeeccCCcceeEEeccCceEEEEEccCCC
Confidence 99998443 9999999999999998774
No 312
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.54 E-value=5.9e-05 Score=73.76 Aligned_cols=230 Identities=11% Similarity=0.120 Sum_probs=131.3
Q ss_pred CcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEE
Q 041325 75 SSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIR 150 (450)
Q Consensus 75 ~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~ 150 (450)
.+.|.++.| +++.++.+..+|.|.+-|.++...... ..-...|.+++|++|. ++..+.++++.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eiv-------------g~vd~GI~aaswS~Dee~l~liT~~~tll 134 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIV-------------GNVDNGISAASWSPDEELLALITGRQTLL 134 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceeee-------------eeccCceEEEeecCCCcEEEEEeCCcEEE
Confidence 368999999 899999999999999998887764433 2234689999999988 66666667776
Q ss_pred EEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEee--------ccee--eee---cCCCceEEEE
Q 041325 151 VWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRR--------HKKC--TWV---HHVDTVSALA 217 (450)
Q Consensus 151 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~--~~~---~~~~~v~~~~ 217 (450)
+-.-.-.-... ..+..-......+..+......-++.. .... ... .-.+.=+.+.
T Consensus 135 ~mT~~f~~i~E------------~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~Is 202 (1265)
T KOG1920|consen 135 FMTKDFEPIAE------------KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSIS 202 (1265)
T ss_pred EEeccccchhc------------cccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEE
Confidence 65432110000 000000000000000000100001110 0000 000 1112234689
Q ss_pred EccCCCEEEEEe----CC-CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEE---cCCCcEEEEeCcchhhh
Q 041325 218 LSSDGSLLYSTS----WD-RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTG---SADTKIKVWKKLRAALQ 289 (450)
Q Consensus 218 ~~~~~~~l~~~~----~d-g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~---~~dg~i~vwd~~~~~~~ 289 (450)
|--||+++++.. .+ ..|++||-+ |.. ........+.-.+++|-|.+. .+++- ..|+.|.++.-..-.
T Consensus 203 WRgDg~~fAVs~~~~~~~~RkirV~drE-g~L-ns~se~~~~l~~~LsWkPsgs-~iA~iq~~~sd~~IvffErNGL~-- 277 (1265)
T KOG1920|consen 203 WRGDGEYFAVSFVESETGTRKIRVYDRE-GAL-NSTSEPVEGLQHSLSWKPSGS-LIAAIQCKTSDSDIVFFERNGLR-- 277 (1265)
T ss_pred EccCCcEEEEEEEeccCCceeEEEeccc-chh-hcccCcccccccceeecCCCC-eEeeeeecCCCCcEEEEecCCcc--
Confidence 999999999842 23 789999987 433 222224455567889998444 55543 345678888743221
Q ss_pred ccccchhhhhHhhcccceEEEEEcCCCCEEEE---eeCCCcEEEEEcCCCc
Q 041325 290 VNKKHSLVQTLEKHKSAVTALALSTDGTVLYS---GACDRSILVWERDQGN 337 (450)
Q Consensus 290 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~---g~~dg~i~vwd~~~~~ 337 (450)
.....-.+......+..++|+.++..|++ ......|++|-+.+-.
T Consensus 278 ---hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 278 ---HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred ---ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 11112222223344899999999999988 4455569999987654
No 313
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.54 E-value=3.7e-05 Score=70.38 Aligned_cols=174 Identities=10% Similarity=0.058 Sum_probs=101.5
Q ss_pred ceEEEEEccCCCE-EEEEeC---CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC--CcEEEEeCcc
Q 041325 212 TVSALALSSDGSL-LYSTSW---DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD--TKIKVWKKLR 285 (450)
Q Consensus 212 ~v~~~~~~~~~~~-l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~vwd~~~ 285 (450)
....-.|+|+|+. ++..+. +..|.++|+.+++...... ..+......|+|++..++++.+.+ ..|.++|+..
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~--~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS--SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec--CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 6678899999984 554433 3568999998886554433 445566678999777666666555 4577777755
Q ss_pred hhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC-C--cEEEEEcCCCceeeeCCCCCCceeeeccccCCccce
Q 041325 286 AALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD-R--SILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI 362 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d-g--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 362 (450)
++ ...+..+........|+|||+.|+..+.. + .|+++|+.+++... ....+.. .
T Consensus 267 g~---------~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r------------lt~~g~~--~ 323 (419)
T PRK04043 267 KT---------LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ------------VVFHGKN--N 323 (419)
T ss_pred Cc---------EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe------------CccCCCc--C
Confidence 54 11122222223456799999987776642 3 58888887765320 0111111 1
Q ss_pred EEEEEeCCeEEEEeCC---------CeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 363 LCLAVVSNLLFSGSSD---------NTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 363 ~~~~~~~~~l~s~~~d---------g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
..++.+++.|+..+.. ..|.+.|+.++. ...+... .......|+||++
T Consensus 324 ~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~---------~~~LT~~-~~~~~p~~SPDG~ 380 (419)
T PRK04043 324 SSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY---------IRRLTAN-GVNQFPRFSSDGG 380 (419)
T ss_pred ceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC---------eEECCCC-CCcCCeEECCCCC
Confidence 2333345555544433 357777877641 2223222 2233578999998
No 314
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.52 E-value=0.00026 Score=64.27 Aligned_cols=114 Identities=16% Similarity=0.149 Sum_probs=78.5
Q ss_pred eEEEEEcc-CCCEEEEE----eCCCc----EEEEecCCCe--EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEE
Q 041325 213 VSALALSS-DGSLLYST----SWDRT----FKIWRTSDFR--CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVW 281 (450)
Q Consensus 213 v~~~~~~~-~~~~l~~~----~~dg~----i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw 281 (450)
..++.|+. +...+.+. +.+|. -.+|++...+ .+..........+.+.+++|+.+ .++.|+.||.|.+|
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~-kLvlGC~DgSiiLy 286 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSED-KLVLGCEDGSIILY 286 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccc-eEEEEecCCeEEEE
Confidence 35566665 33334432 22333 3456665443 33333346788999999999555 89999999999999
Q ss_pred eCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCc
Q 041325 282 KKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGN 337 (450)
Q Consensus 282 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~ 337 (450)
|...+. .......-.++.++|+|+|..+++|+..|.+.+||+.-..
T Consensus 287 D~~~~~----------t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 287 DTTRGV----------TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EcCCCe----------eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence 986543 1112234457889999999999999999999999987544
No 315
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.48 E-value=0.00057 Score=58.21 Aligned_cols=175 Identities=15% Similarity=0.113 Sum_probs=104.5
Q ss_pred eEEEEEc-cCCCEEEEEeCCCcEEEEecCCCeEEEEeec---c-cccceEEEEEeecCCcEEEEEcCC--------CcEE
Q 041325 213 VSALALS-SDGSLLYSTSWDRTFKIWRTSDFRCLESVKN---A-HDDAINAIVVSKSNDGFVYTGSAD--------TKIK 279 (450)
Q Consensus 213 v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~-~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~ 279 (450)
...+++. +++. ++.+.. +.+.++|..+++....... . .....+.+++.+++. +.++.... |.|.
T Consensus 42 ~~G~~~~~~~g~-l~v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~ 118 (246)
T PF08450_consen 42 PNGMAFDRPDGR-LYVADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVY 118 (246)
T ss_dssp EEEEEEECTTSE-EEEEET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEE
T ss_pred CceEEEEccCCE-EEEEEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceE
Confidence 6677787 5654 555554 4456669988865544442 1 456788999997444 55554433 4566
Q ss_pred EEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEE-EeeCCCcEEEEEcCCCce-eeeCCCCCCceeeeccccC
Q 041325 280 VWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLY-SGACDRSILVWERDQGNY-IVDGDDDSGHMVLKGALRG 357 (450)
Q Consensus 280 vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~-~g~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~ 357 (450)
.++.. ++ .......-...+.|+|+|+++.|+ +-+..+.|..|++..... +. .......+..
T Consensus 119 ~~~~~-~~---------~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~-------~~~~~~~~~~ 181 (246)
T PF08450_consen 119 RIDPD-GK---------VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELS-------NRRVFIDFPG 181 (246)
T ss_dssp EEETT-SE---------EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEE-------EEEEEEE-SS
T ss_pred EECCC-Ce---------EEEEecCcccccceEECCcchheeecccccceeEEEecccccccee-------eeeeEEEcCC
Confidence 66654 22 122222345578999999999776 556678899999864321 10 0001112222
Q ss_pred CccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEE
Q 041325 358 HTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAV 416 (450)
Q Consensus 358 ~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 416 (450)
..+..-.++++ +++.++....+.|.+++.+ + +.+..+.-....+++++|.
T Consensus 182 ~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G--------~~~~~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 182 GPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G--------KLLREIELPVPRPTNCAFG 233 (246)
T ss_dssp SSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S--------CEEEEEE-SSSSEEEEEEE
T ss_pred CCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c--------cEEEEEcCCCCCEEEEEEE
Confidence 22335677776 5566666678999999977 3 4555555555589999995
No 316
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=1.3e-05 Score=68.63 Aligned_cols=80 Identities=18% Similarity=0.120 Sum_probs=70.3
Q ss_pred eecCCCceEEEEEccCCC-EEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCc
Q 041325 206 WVHHVDTVSALALSSDGS-LLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKL 284 (450)
Q Consensus 206 ~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 284 (450)
+..|...|.+++|+|..+ ++..++.+..|+|.|+++..++..+. .+ ..+++++|.-++.+++.+|-.+|.|.+||++
T Consensus 189 lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~-a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R 266 (463)
T KOG1645|consen 189 LPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYI-AY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMR 266 (463)
T ss_pred ccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehee-cc-CCceeeeeccCCcceeEEeccCceEEEEEcc
Confidence 345778899999999766 78889999999999999998888887 44 8999999998888899999999999999998
Q ss_pred chh
Q 041325 285 RAA 287 (450)
Q Consensus 285 ~~~ 287 (450)
..+
T Consensus 267 ~~~ 269 (463)
T KOG1645|consen 267 QPE 269 (463)
T ss_pred CCC
Confidence 765
No 317
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.47 E-value=2.6e-07 Score=83.37 Aligned_cols=203 Identities=17% Similarity=0.259 Sum_probs=130.4
Q ss_pred CCCcceEEEEE----eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---EEEEe-
Q 041325 73 GNSSYIPSLAI----AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---LFSAH- 144 (450)
Q Consensus 73 ~h~~~v~~~~~----d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~- 144 (450)
.....+.|++. |...++.|..+|.|-+-.+....-. ......+|...+++++|++-. |++|-
T Consensus 54 sdtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS----------s~E~tp~~ar~Ct~lAwneLDtn~LAagld 123 (783)
T KOG1008|consen 54 SDTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS----------SAEVTPGYARPCTSLAWNELDTNHLAAGLD 123 (783)
T ss_pred ccCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc----------cceecccccccccccccccccHHHHHhhhh
Confidence 34567788877 3568899999999999877654322 011244777899999999653 55552
Q ss_pred ---CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeee-cCCCceEEEEEcc
Q 041325 145 ---QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWV-HHVDTVSALALSS 220 (450)
Q Consensus 145 ---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~ 220 (450)
.|..+.|||+.+.-. .|.... .+. +......+++|..
T Consensus 124 khrnds~~~Iwdi~s~lt-------------------vPke~~--------------------~fs~~~l~gqns~cwlr 164 (783)
T KOG1008|consen 124 KHRNDSSLKIWDINSLLT-------------------VPKESP--------------------LFSSSTLDGQNSVCWLR 164 (783)
T ss_pred hhcccCCccceecccccC-------------------CCcccc--------------------ccccccccCcccccccc
Confidence 356799999988721 000000 000 1222455888888
Q ss_pred CCCEEEEEeCCCcEEEEecCCCe-EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeC-cchhhhccccchhhh
Q 041325 221 DGSLLYSTSWDRTFKIWRTSDFR-CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKK-LRAALQVNKKHSLVQ 298 (450)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~-~~~~~~~~~~~~~~~ 298 (450)
+.+++.+|.....+.++|++... ....+ ....+..+.+.|...+++++-. ||.|.+||. ++-+ .++.
T Consensus 165 d~klvlaGm~sr~~~ifdlRqs~~~~~sv---nTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnie-------npl~ 233 (783)
T KOG1008|consen 165 DTKLVLAGMTSRSVHIFDLRQSLDSVSSV---NTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIE-------NPLQ 233 (783)
T ss_pred Ccchhhcccccchhhhhhhhhhhhhhhhh---hhhhcccceecCCCCCceeccc-cCceeeccchhhhc-------cHHH
Confidence 89999999999999999998432 22222 3456777888886666766555 999999994 3222 1333
Q ss_pred hHhhcc----cceEEEEEcCCC-CEEEEeeC-CCcEEEEEcCC
Q 041325 299 TLEKHK----SAVTALALSTDG-TVLYSGAC-DRSILVWERDQ 335 (450)
Q Consensus 299 ~~~~~~----~~i~~l~~~~~~-~~l~~g~~-dg~i~vwd~~~ 335 (450)
.+...+ ..+..++|+|.. .++++... .++|+.||+..
T Consensus 234 ~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 234 IILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred HHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 333222 248999999943 24444444 57899999863
No 318
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.46 E-value=0.00048 Score=67.74 Aligned_cols=197 Identities=19% Similarity=0.223 Sum_probs=119.2
Q ss_pred CceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceee
Q 041325 128 DAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCT 205 (450)
Q Consensus 128 ~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (450)
+.|.++.|..+. ++.+..+|.|.+-|.++... +.+.
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~--------------eivg---------------------------- 106 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETLEL--------------EIVG---------------------------- 106 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEcccccce--------------eeee----------------------------
Confidence 589999998555 88888899999988776632 1111
Q ss_pred eecCCCceEEEEEccCCCEEEEEeCCCcEEEEec----CCCeEE-------------------EEeec-----------c
Q 041325 206 WVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRT----SDFRCL-------------------ESVKN-----------A 251 (450)
Q Consensus 206 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~----~~~~~~-------------------~~~~~-----------~ 251 (450)
.-...|.+++|+||++.++..+.++++.+-+- -..+.+ ..+.. .
T Consensus 107 --~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~ 184 (1265)
T KOG1920|consen 107 --NVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIE 184 (1265)
T ss_pred --eccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccc
Confidence 13447999999999999999988888776532 111111 11110 0
Q ss_pred ---------cccceEEEEEeecCCcEEEE-----EcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCC
Q 041325 252 ---------HDDAINAIVVSKSNDGFVYT-----GSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGT 317 (450)
Q Consensus 252 ---------~~~~v~~~~~~~~~~~~l~~-----~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~ 317 (450)
..+.=.+|.|..++. ++++ ......|++||.+ +. +-..-......=.+++|-|.|.
T Consensus 185 ~ek~~~~~~~~~~~~~IsWRgDg~-~fAVs~~~~~~~~RkirV~drE-g~--------Lns~se~~~~l~~~LsWkPsgs 254 (1265)
T KOG1920|consen 185 KEKALEQIEQDDHKTSISWRGDGE-YFAVSFVESETGTRKIRVYDRE-GA--------LNSTSEPVEGLQHSLSWKPSGS 254 (1265)
T ss_pred ccccccchhhccCCceEEEccCCc-EEEEEEEeccCCceeEEEeccc-ch--------hhcccCcccccccceeecCCCC
Confidence 011223477774222 5555 2233799999975 33 2222222233446799999999
Q ss_pred EEEEee---CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEE---EeCCCeEEEeeCCC
Q 041325 318 VLYSGA---CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFS---GSSDNTIRIWRRSS 388 (450)
Q Consensus 318 ~l~~g~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s---~~~dg~v~iwd~~~ 388 (450)
++++-. .|+.|.+|.-+.-+. + ............+..++|+. +.|+. ......|++|-+.+
T Consensus 255 ~iA~iq~~~sd~~IvffErNGL~h--------g--~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 255 LIAAIQCKTSDSDIVFFERNGLRH--------G--EFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred eEeeeeecCCCCcEEEEecCCccc--------c--ccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence 988854 356788888653221 1 11122333344589999984 46665 44455599998764
No 319
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.44 E-value=0.00025 Score=63.90 Aligned_cols=267 Identities=13% Similarity=0.098 Sum_probs=124.6
Q ss_pred ceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeE-EeccCcccccceeeeeeccCCCcceeEeee-cCceEEEeeccee
Q 041325 129 AVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAY-YSTSGKLKNKYYERIATLPTLNDRFTKCFL-ANNYVQVRRHKKC 204 (450)
Q Consensus 129 ~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 204 (450)
.|+.+.|.++. |+.|...|.|.+|.+...+... ........ .....+ ........+..... ....+.-.-.+..
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~-~~~~~~-~~~~~~~~l~di~~r~~~~~~~gf~P~~ 80 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLD-YNFRRF-SLNNSPGKLTDISDRAPPSLKEGFLPLT 80 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-------------------S---GGGSS-SEEE-GGG--TT-SEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccC-cccccc-cccCCCcceEEehhhCCcccccccCchh
Confidence 57889998775 9999999999999987663321 00000000 000000 00000000000000 0000000011222
Q ss_pred eeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeec-------ccccceEEEEEee---cCCc----EEE
Q 041325 205 TWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKN-------AHDDAINAIVVSK---SNDG----FVY 270 (450)
Q Consensus 205 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~v~~~~~~~---~~~~----~l~ 270 (450)
.+....++|++++.+.-| +++.|..+|.+.|.|++....+..-.. .....++++.|.- .++. .++
T Consensus 81 l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 81 LLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp EE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred heeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 333457899999997444 899999999999999998877765321 1234677777762 2232 589
Q ss_pred EEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEE-EcCC--------------------CCEEEEeeCCCcEE
Q 041325 271 TGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALA-LSTD--------------------GTVLYSGACDRSIL 329 (450)
Q Consensus 271 ~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~-~~~~--------------------~~~l~~g~~dg~i~ 329 (450)
+|+..|.+.+|.+.-.... ............+.+.|..+. ++.+ -+-++....+..++
T Consensus 160 vGTn~G~v~~fkIlp~~~g-~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir 238 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNG-RFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR 238 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG--EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred EEeCCCCEEEEEEecCCCC-ceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence 9999999999987521100 001111111123445555444 3221 01234444577899
Q ss_pred EEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEE-------eCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEE
Q 041325 330 VWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV-------VSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAV 402 (450)
Q Consensus 330 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 402 (450)
++...+.+... ..+ ........+.+ .+..|++-..+|.|++|.+.. .+.+..
T Consensus 239 v~~~~~~k~~~------------K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~--------Lkei~~ 297 (395)
T PF08596_consen 239 VFKPPKSKGAH------------KSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPS--------LKEIKS 297 (395)
T ss_dssp EE-TT---EEE------------EE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT----------EEEE
T ss_pred EEeCCCCcccc------------eee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCC--------chHhhc
Confidence 99988776442 111 11111222222 244888889999999999886 344444
Q ss_pred ecCC----CcceEEEEEEecCC
Q 041325 403 LEGH----RRPVKCLTAVVDSD 420 (450)
Q Consensus 403 ~~~h----~~~v~~l~~~~~~~ 420 (450)
..-+ ...+....++++|+
T Consensus 298 ~~l~~~~d~~~~~~ssis~~Gd 319 (395)
T PF08596_consen 298 VSLPPPLDSRRLSSSSISRNGD 319 (395)
T ss_dssp EE-SS---HHHHTT-EE-TTS-
T ss_pred ccCCCccccccccccEECCCCC
Confidence 4332 23455566677776
No 320
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.44 E-value=0.00036 Score=63.97 Aligned_cols=113 Identities=12% Similarity=0.079 Sum_probs=69.6
Q ss_pred ceEEEEEccCCCEEEEE-eC--CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCC--cEEEEeCcch
Q 041325 212 TVSALALSSDGSLLYST-SW--DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADT--KIKVWKKLRA 286 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~-~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~ 286 (450)
......|+|||+.++.. +. +..|.++|+.+++. ..+. .+........|+|++..++++....+ .|.++|+..+
T Consensus 234 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT-~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g 311 (419)
T PRK04043 234 MLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQIT-NYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSG 311 (419)
T ss_pred cEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEcc-cCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 45567799999876654 33 35688889877764 3343 23333345679997776766665555 4666677655
Q ss_pred hhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC---------CcEEEEEcCCCc
Q 041325 287 ALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD---------RSILVWERDQGN 337 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d---------g~i~vwd~~~~~ 337 (450)
+.. ... ..+. ....|+|||++|+..... ..|.+.|+.++.
T Consensus 312 ~~~-----rlt--~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~ 360 (419)
T PRK04043 312 SVE-----QVV--FHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY 360 (419)
T ss_pred CeE-----eCc--cCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC
Confidence 410 011 1111 124899999988876653 367888887664
No 321
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.44 E-value=0.0013 Score=60.02 Aligned_cols=148 Identities=16% Similarity=0.101 Sum_probs=90.3
Q ss_pred ccceEEEEEeecCCcEEEEE----cCCCcE----EEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC
Q 041325 253 DDAINAIVVSKSNDGFVYTG----SADTKI----KVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC 324 (450)
Q Consensus 253 ~~~v~~~~~~~~~~~~l~~~----~~dg~i----~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~ 324 (450)
+....++.|+-..+..+.+. +.+|.+ .+|++..++.+ ...+..+ ..++.+.+++++|+.+.++.|+.
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klq----rvsvtsi-pL~s~v~~ca~sp~E~kLvlGC~ 279 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQ----RVSVTSI-PLPSQVICCARSPSEDKLVLGCE 279 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCcee----EEEEEEE-ecCCcceEEecCcccceEEEEec
Confidence 33446667775455444433 234433 35665443311 1111122 36678999999999999999999
Q ss_pred CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCCCcccc-----CCCc
Q 041325 325 DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDH-----QKGY 397 (450)
Q Consensus 325 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~-----~~~~ 397 (450)
||.|.+||...+.. ......-..+.++|+++ .+++|+.-|.+.+||+.-..... ....
T Consensus 280 DgSiiLyD~~~~~t---------------~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALspi~~qLlsEd~~P 344 (545)
T PF11768_consen 280 DGSIILYDTTRGVT---------------LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSPIKMQLLSEDATP 344 (545)
T ss_pred CCeEEEEEcCCCee---------------eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCccceeeccccCCC
Confidence 99999999886531 12223344688999865 99999999999999987432110 0011
Q ss_pred ee---EEEecCCCcceEEEEEEecCC
Q 041325 398 SC---LAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 398 ~~---~~~~~~h~~~v~~l~~~~~~~ 420 (450)
.. +...-.+......+.|.+...
T Consensus 345 ~~~L~Ls~yf~~~~~L~~iqW~~~~~ 370 (545)
T PF11768_consen 345 KSTLQLSKYFRVSSSLVHIQWAPAPQ 370 (545)
T ss_pred ccEEeeehhccCcchhheeEeccCCC
Confidence 11 112223456677888885543
No 322
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=9.9e-05 Score=69.59 Aligned_cols=207 Identities=12% Similarity=0.206 Sum_probs=131.8
Q ss_pred ceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCc-eEEEEEeCC--eEEEEeCCC-----e
Q 041325 77 YIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDA-VKSLVVLGD--KLFSAHQDH-----K 148 (450)
Q Consensus 77 ~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~~~--~l~s~~~dg-----~ 148 (450)
.|+|++-.+..++.|+.+|.|.+.+-.-.. ... +..+... |..+....+ .|++.+.|+ .
T Consensus 27 ~isc~~s~~~~vvigt~~G~V~~Ln~s~~~-~~~------------fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~l 93 (933)
T KOG2114|consen 27 AISCCSSSTGSVVIGTADGRVVILNSSFQL-IRG------------FQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVL 93 (933)
T ss_pred ceeEEcCCCceEEEeeccccEEEeccccee-eeh------------heecchhhhhHhhcccCceEEEEEeecCCCCceE
Confidence 788888899999999999999888743211 111 3344444 455544444 377777765 4
Q ss_pred EEEEEcCCCceeEEeccCcccccce--eeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEE
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYY--ERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLY 226 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 226 (450)
+++|+++..+.. ..+..+ ..+...+. .....++.+++.+.+-+.+|
T Consensus 94 lkiw~lek~~~n-------~sP~c~~~~ri~~~~n-------------------------p~~~~p~s~l~Vs~~l~~Iv 141 (933)
T KOG2114|consen 94 LKIWDLEKVDKN-------NSPQCLYEHRIFTIKN-------------------------PTNPSPASSLAVSEDLKTIV 141 (933)
T ss_pred EEEecccccCCC-------CCcceeeeeeeeccCC-------------------------CCCCCcceEEEEEccccEEE
Confidence 999999865210 001111 01111111 01355789999999999999
Q ss_pred EEeCCCcEEEEecC---CCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhc
Q 041325 227 STSWDRTFKIWRTS---DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKH 303 (450)
Q Consensus 227 ~~~~dg~i~iwd~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 303 (450)
+|-.+|.|..+.-+ +......+......+|+.+.+..++...+++++. ..|.+|.+.. + . .....+..|
T Consensus 142 ~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt-~~V~~y~l~g-r-----~-p~~~~ld~~ 213 (933)
T KOG2114|consen 142 CGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATT-EQVMLYSLSG-R-----T-PSLKVLDNN 213 (933)
T ss_pred EEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEec-ceeEEEEecC-C-----C-cceeeeccC
Confidence 99999999998532 1111223333567899999999766553444443 4689999862 2 1 234456778
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCc
Q 041325 304 KSAVTALALSTDGTVLYSGACDRSILVWERDQGN 337 (450)
Q Consensus 304 ~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~ 337 (450)
...+.|..+++....+++++ +..|.+|+....+
T Consensus 214 G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~ 246 (933)
T KOG2114|consen 214 GISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRG 246 (933)
T ss_pred CccceeeecCCCCccEEEec-CceEEEEcCCCcc
Confidence 88899999997655465554 4569999987543
No 323
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.37 E-value=1.1e-07 Score=85.61 Aligned_cols=205 Identities=15% Similarity=0.172 Sum_probs=132.6
Q ss_pred CCceEEEEEcc--CCCEEEEEeCCCcEEEEecCCCeEE-EEeecccccceEEEEEeecCCcEEEEEcC----CCcEEEEe
Q 041325 210 VDTVSALALSS--DGSLLYSTSWDRTFKIWRTSDFRCL-ESVKNAHDDAINAIVVSKSNDGFVYTGSA----DTKIKVWK 282 (450)
Q Consensus 210 ~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~vwd 282 (450)
...+.|+++.- +..+++.|..+|.|-+-.++...-. .++..++....++++|++-+.+.|++|-. |-.+.|||
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd 135 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD 135 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence 34677777765 3457888999999999888765443 55555788899999999876677877743 56799999
Q ss_pred CcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccce
Q 041325 283 KLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI 362 (450)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 362 (450)
+.+.-......+.... +......+++|-.+.+++++|.....++++|++.... ....-.+..+
T Consensus 136 i~s~ltvPke~~~fs~---~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~--------------~~~svnTk~v 198 (783)
T KOG1008|consen 136 INSLLTVPKESPLFSS---STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLD--------------SVSSVNTKYV 198 (783)
T ss_pred cccccCCCcccccccc---ccccCccccccccCcchhhcccccchhhhhhhhhhhh--------------hhhhhhhhhc
Confidence 9776321111111111 1334456889998999999999999999999983210 1111112223
Q ss_pred EEEE---EeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCC----cceEEEEEEecCCCCCCCCCCCCceEEE
Q 041325 363 LCLA---VVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHR----RPVKCLTAVVDSDYSNRNSDHSSTSFLV 435 (450)
Q Consensus 363 ~~~~---~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~----~~v~~l~~~~~~~~~~~~~~~~~~~~~l 435 (450)
..+. |.++++++-. ||.|.+||..... ..++..+.... ..+..++|+|.... ++
T Consensus 199 qG~tVdp~~~nY~cs~~-dg~iAiwD~~rni------enpl~~i~~~~N~~~~~l~~~aycPtrtg------------ll 259 (783)
T KOG1008|consen 199 QGITVDPFSPNYFCSNS-DGDIAIWDTYRNI------ENPLQIILRNENKKPKQLFALAYCPTRTG------------LL 259 (783)
T ss_pred ccceecCCCCCceeccc-cCceeeccchhhh------ccHHHHHhhCCCCcccceeeEEeccCCcc------------hh
Confidence 3333 3567888766 9999999942110 12222222112 24889999998764 56
Q ss_pred EEccc-CCcEEEEEeC
Q 041325 436 YSGSL-DCEIKIWQIR 450 (450)
Q Consensus 436 ~s~~~-Dg~i~iw~l~ 450 (450)
++... .++|+++|++
T Consensus 260 a~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 260 AVLSRDSITIRLYDIC 275 (783)
T ss_pred hhhccCcceEEEeccc
Confidence 66664 5678888874
No 324
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.36 E-value=0.0013 Score=62.06 Aligned_cols=285 Identities=9% Similarity=0.091 Sum_probs=147.6
Q ss_pred EeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCc--eEEEEEeC-CeEEEEeCCCeEEEEEcCCCce
Q 041325 83 IAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDA--VKSLVVLG-DKLFSAHQDHKIRVWKIDNNTS 159 (450)
Q Consensus 83 ~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--v~~l~~~~-~~l~s~~~dg~i~iw~~~~~~~ 159 (450)
+.+..++.++.+|.|+..|..+++............ ..... ...+.... +.++.++.+|.|..+|.++++.
T Consensus 59 v~~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~------~~~~~~~~~g~~~~~~~~V~v~~~~g~v~AlD~~TG~~ 132 (488)
T cd00216 59 VVDGDMYFTTSHSALFALDAATGKVLWRYDPKLPAD------RGCCDVVNRGVAYWDPRKVFFGTFDGRLVALDAETGKQ 132 (488)
T ss_pred EECCEEEEeCCCCcEEEEECCCChhhceeCCCCCcc------ccccccccCCcEEccCCeEEEecCCCeEEEEECCCCCE
Confidence 356677778888999999999998776533222100 00000 11223434 6788889999999999999987
Q ss_pred eEEeccCccc-------c--cceeeeeeccCC--------CcceeEeeecCceEEEeecceee-----ee---------c
Q 041325 160 AYYSTSGKLK-------N--KYYERIATLPTL--------NDRFTKCFLANNYVQVRRHKKCT-----WV---------H 208 (450)
Q Consensus 160 ~~~~~~~~~~-------~--~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-----~~---------~ 208 (450)
.......... . .....+..+... ......++....-..++...... .. .
T Consensus 133 ~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~ 212 (488)
T cd00216 133 VWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWG 212 (488)
T ss_pred eeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceec
Confidence 6554433210 0 000000000000 01111222222112222211100 00 0
Q ss_pred CC-Cce-EEEEEccCCCEEEEEeCCC------------------cEEEEecCCCeEEEEeeccccc-----ceEEEEEee
Q 041325 209 HV-DTV-SALALSSDGSLLYSTSWDR------------------TFKIWRTSDFRCLESVKNAHDD-----AINAIVVSK 263 (450)
Q Consensus 209 ~~-~~v-~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~-----~v~~~~~~~ 263 (450)
+. ..+ ...++.+.+..++.++.++ .|.-+|..+++.+-.++..+.. ......+..
T Consensus 213 ~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~ 292 (488)
T cd00216 213 PGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLAD 292 (488)
T ss_pred CCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEe
Confidence 00 011 1234455566777777665 7999999999998877532211 001111110
Q ss_pred ---cCC---cEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEe---------------
Q 041325 264 ---SND---GFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSG--------------- 322 (450)
Q Consensus 264 ---~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g--------------- 322 (450)
... ..++.++.+|.+...|.++++. +...... ...++.+| ..++.+
T Consensus 293 ~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~--------~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~ 359 (488)
T cd00216 293 IKPKDGKPVPAIVHAPKNGFFYVLDRTTGKL--------ISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKR 359 (488)
T ss_pred ccccCCCeeEEEEEECCCceEEEEECCCCcE--------eeEeEee---ccccccCC--ceEEEccccccccCcccccCC
Confidence 011 2578888999999999988872 2111100 11223333 223322
Q ss_pred ---eCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCCC
Q 041325 323 ---ACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 323 ---~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~ 389 (450)
..+|.|.-.|+.+++.+.+......... ...... ..-..+...++.|+.++.||.|+.+|.+++
T Consensus 360 ~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~--~~~g~~-~~~~~~~~~g~~v~~g~~dG~l~ald~~tG 426 (488)
T cd00216 360 CKKPGKGGLAALDPKTGKVVWEKREGTIRDS--WNIGFP-HWGGSLATAGNLVFAGAADGYFRAFDATTG 426 (488)
T ss_pred CCCCCceEEEEEeCCCCcEeeEeeCCccccc--cccCCc-ccCcceEecCCeEEEECCCCeEEEEECCCC
Confidence 2467899999999987754333211000 000000 111234556789999999999999999987
No 325
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.35 E-value=0.00031 Score=62.29 Aligned_cols=236 Identities=15% Similarity=0.184 Sum_probs=138.0
Q ss_pred CCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecce
Q 041325 126 NGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKK 203 (450)
Q Consensus 126 h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (450)
-.-++..++++|.+ |++... .-|.+|.-.... .+..+.
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~~-~~V~~~~g~~~~----------------~l~~~~----------------------- 70 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEHA-AGVECWGGPSKA----------------KLVRFR----------------------- 70 (561)
T ss_pred cCcchhheeecCcchheehhhc-cceEEccccchh----------------heeeee-----------------------
Confidence 44578899999888 444443 459999887662 222221
Q ss_pred eeeecCCCceEEEEEccCCCEEEEEeCC---------------CcEEEEecCCCeEEEEeecccccc--eE-EEEEeecC
Q 041325 204 CTWVHHVDTVSALALSSDGSLLYSTSWD---------------RTFKIWRTSDFRCLESVKNAHDDA--IN-AIVVSKSN 265 (450)
Q Consensus 204 ~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------------g~i~iwd~~~~~~~~~~~~~~~~~--v~-~~~~~~~~ 265 (450)
| ..|..+.|+|++++|.+=+.. +.+.+||+.++..+..+. ....+ .+ -+.|+-+
T Consensus 71 -----~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~-~~~q~~~~Wp~~k~s~~- 142 (561)
T COG5354 71 -----H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFN-GISQPYLGWPVLKFSID- 142 (561)
T ss_pred -----c-CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeecc-ccCCcccccceeeeeec-
Confidence 2 247888899999998875543 359999999999998886 33332 33 5667753
Q ss_pred CcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCC--CEEEE-----eeCCCcEEEEEcCCCce
Q 041325 266 DGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDG--TVLYS-----GACDRSILVWERDQGNY 338 (450)
Q Consensus 266 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~--~~l~~-----g~~dg~i~vwd~~~~~~ 338 (450)
+.+++-- ....++++++ +... .......+. ...|....|+|.+ ..|+. ...++.+++|.+..++.
T Consensus 143 D~y~ARv-v~~sl~i~e~-t~n~----~~~p~~~lr--~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~ 214 (561)
T COG5354 143 DKYVARV-VGSSLYIHEI-TDNI----EEHPFKNLR--PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV 214 (561)
T ss_pred chhhhhh-ccCeEEEEec-CCcc----ccCchhhcc--ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCe
Confidence 3343322 3456999997 3321 111222222 3668888999854 33443 34577899998886554
Q ss_pred eeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEe-----------CCCeEEEeeCCCCccccCCCceeEEEecC
Q 041325 339 IVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGS-----------SDNTIRIWRRSSSVTDHQKGYSCLAVLEG 405 (450)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~-----------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 405 (450)
+. ...+.. ..-..+.|. +++|+.-- .+..++++++.. .-+.....
T Consensus 215 l~-----------tk~lfk--~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e---------~~i~V~~~ 272 (561)
T COG5354 215 LV-----------TKNLFK--VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITE---------RSIPVEKD 272 (561)
T ss_pred ee-----------eeeeEe--ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecc---------cccceecc
Confidence 41 011110 111234444 33222111 235577887773 11222225
Q ss_pred CCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 406 HRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 406 h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
-.++|...+|.|.++. .-+++|-.+..+.++|+|
T Consensus 273 ~~~pVhdf~W~p~S~~-----------F~vi~g~~pa~~s~~~lr 306 (561)
T COG5354 273 LKDPVHDFTWEPLSSR-----------FAVISGYMPASVSVFDLR 306 (561)
T ss_pred ccccceeeeecccCCc-----------eeEEecccccceeecccc
Confidence 5789999999998872 134444567777777764
No 326
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.34 E-value=8.2e-05 Score=66.52 Aligned_cols=209 Identities=13% Similarity=0.109 Sum_probs=118.7
Q ss_pred ceEEEEEccCCCEEEEEeC-----------CCcEEEEecCCCeEEEEeec--ccccceEEEEEeecCCcEEEEEcCCCcE
Q 041325 212 TVSALALSSDGSLLYSTSW-----------DRTFKIWRTSDFRCLESVKN--AHDDAINAIVVSKSNDGFVYTGSADTKI 278 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~l~~~~~dg~i 278 (450)
.|.-+.|||+.+||++-+. ...++|||+.+|...+.+.. .....-.-+.|+. ++.+++.-.. ..|
T Consensus 251 ~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~-DdKy~Arm~~-~si 328 (698)
T KOG2314|consen 251 GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSH-DDKYFARMTG-NSI 328 (698)
T ss_pred CceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEecc-CCceeEEecc-ceE
Confidence 4788999999999998652 25799999999998888763 1122233457876 3446665555 568
Q ss_pred EEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC-----CcEEEEEcCCCceee-------------
Q 041325 279 KVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD-----RSILVWERDQGNYIV------------- 340 (450)
Q Consensus 279 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d-----g~i~vwd~~~~~~~~------------- 340 (450)
.||+...-. ++..-.-.-..|....|+|.+++||-=... -.+.+..+.+++.+.
T Consensus 329 sIyEtpsf~--------lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLh 400 (698)
T KOG2314|consen 329 SIYETPSFM--------LLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLH 400 (698)
T ss_pred EEEecCcee--------eecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEE
Confidence 999864422 222112233567777888877776643321 123333333332211
Q ss_pred -eCCCCC--------------Ccee--eecccc---------CCccceEEEEEe--CCeEEEEeC---CCeEEEeeCCCC
Q 041325 341 -DGDDDS--------------GHMV--LKGALR---------GHTKAILCLAVV--SNLLFSGSS---DNTIRIWRRSSS 389 (450)
Q Consensus 341 -~~~~~~--------------~~~~--~~~~~~---------~~~~~v~~~~~~--~~~l~s~~~---dg~v~iwd~~~~ 389 (450)
+-+.+. +... ....+. .-...|..++|. |+.+++-+. ..++.+|.+++.
T Consensus 401 WQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~ 480 (698)
T KOG2314|consen 401 WQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETN 480 (698)
T ss_pred eccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecC
Confidence 000000 0000 000000 123456777776 443333322 356889988842
Q ss_pred ccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcc---cCCcEEEEEe
Q 041325 390 VTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGS---LDCEIKIWQI 449 (450)
Q Consensus 390 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~---~Dg~i~iw~l 449 (450)
...+..+..+.. ...+.+.|+|.|+ +++.+. ..|.+.++|+
T Consensus 481 ----~~~~~lVk~~dk--~~~N~vfwsPkG~-------------fvvva~l~s~~g~l~F~D~ 524 (698)
T KOG2314|consen 481 ----IKKPSLVKELDK--KFANTVFWSPKGR-------------FVVVAALVSRRGDLEFYDT 524 (698)
T ss_pred ----CCchhhhhhhcc--cccceEEEcCCCc-------------EEEEEEecccccceEEEec
Confidence 334555666543 5678999999999 665543 4677888775
No 327
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.25 E-value=8e-05 Score=70.20 Aligned_cols=183 Identities=15% Similarity=0.234 Sum_probs=115.9
Q ss_pred EEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccc-eEEEEEeecCCcEEEEEcCCC-----cEEEEeCcchhhhc
Q 041325 217 ALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDA-INAIVVSKSNDGFVYTGSADT-----KIKVWKKLRAALQV 290 (450)
Q Consensus 217 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~ 290 (450)
+|++.+..++.|+.+|.|.+.+-. .+.+..++ .+... |..+-.. ...++|++.+.|+ .+++|+++..+-+
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fq-a~~~siv~~L~~~-~~~~~L~sv~Ed~~~np~llkiw~lek~~~n- 105 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQ-AYEQSIVQFLYIL-NKQNFLFSVGEDEQGNPVLLKIWDLEKVDKN- 105 (933)
T ss_pred EEcCCCceEEEeeccccEEEeccc-ceeeehhe-ecchhhhhHhhcc-cCceEEEEEeecCCCCceEEEEecccccCCC-
Confidence 467788899999999999888753 34446666 55555 4444433 2445777766655 4899999775411
Q ss_pred cccchhh---h----hHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceE
Q 041325 291 NKKHSLV---Q----TLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAIL 363 (450)
Q Consensus 291 ~~~~~~~---~----~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 363 (450)
..+.++ + .......++.+++.+.+-+.+++|-.+|.|..+.-.-.+- .+. ...-...-..+|+
T Consensus 106 -~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RD-------rgs--r~~~~~~~~~pIT 175 (933)
T KOG2114|consen 106 -NSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRD-------RGS--RQDYSHRGKEPIT 175 (933)
T ss_pred -CCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhc-------ccc--ceeeeccCCCCce
Confidence 112222 1 1112356789999999999999999999999886432110 000 0111223357899
Q ss_pred EEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 364 CLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 364 ~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
.+++.. ..++-......|.+|.+... + .....+..|..+++|..+++...
T Consensus 176 gL~~~~d~~s~lFv~Tt~~V~~y~l~gr------~-p~~~~ld~~G~~lnCss~~~~t~ 227 (933)
T KOG2114|consen 176 GLALRSDGKSVLFVATTEQVMLYSLSGR------T-PSLKVLDNNGISLNCSSFSDGTY 227 (933)
T ss_pred eeEEecCCceeEEEEecceeEEEEecCC------C-cceeeeccCCccceeeecCCCCc
Confidence 999973 33222333456899998831 2 34555778888899988887655
No 328
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.23 E-value=1.5e-05 Score=73.14 Aligned_cols=158 Identities=17% Similarity=0.188 Sum_probs=104.8
Q ss_pred CCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhh
Q 041325 209 HVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAAL 288 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 288 (450)
+...|.--+++..+++++.|+.-|.+.+|+-..++....-.....+.+..+..++ .+.+++.|+..|.|.++-+....-
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~-~e~lvAagt~~g~V~v~ql~~~~p 110 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSS-VEYLVAAGTASGRVSVFQLNKELP 110 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecc-hhHhhhhhcCCceEEeehhhccCC
Confidence 4445665667778999999999999999998776654433323333444445554 565889999999999998765320
Q ss_pred hccccchhhhh-HhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEE
Q 041325 289 QVNKKHSLVQT-LEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV 367 (450)
Q Consensus 289 ~~~~~~~~~~~-~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 367 (450)
.....+.. -..|...|++++|++|+..+++|...|+|..-.+.+.... ....+.+..-.+.|..+.+
T Consensus 111 ---~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~---------~~~~q~il~~ds~IVQlD~ 178 (726)
T KOG3621|consen 111 ---RDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAF---------LSKSQEILSEDSEIVQLDY 178 (726)
T ss_pred ---CcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhh---------ccccceeeccCcceEEeec
Confidence 11111111 1237789999999999999999999999999888762110 1122333445677888888
Q ss_pred eCCeEEEEeCCC
Q 041325 368 VSNLLFSGSSDN 379 (450)
Q Consensus 368 ~~~~l~s~~~dg 379 (450)
...+|+.++--.
T Consensus 179 ~q~~LLVStl~r 190 (726)
T KOG3621|consen 179 LQSYLLVSTLTR 190 (726)
T ss_pred ccceehHhhhhh
Confidence 766555444433
No 329
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.21 E-value=7.5e-07 Score=83.50 Aligned_cols=161 Identities=14% Similarity=0.122 Sum_probs=109.7
Q ss_pred eeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCC-cEEEEe
Q 041325 204 CTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADT-KIKVWK 282 (450)
Q Consensus 204 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-~i~vwd 282 (450)
..+..|....+|++|+.+.+.|+.|+..|.|+++++.+|....... .|..+|+-+.-+.+++.+|.+++... -..+|+
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~n-cH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVN-CHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWD 1173 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcccccccc-ccccccccccccCCcceeeeeccccCchHHHhc
Confidence 3456788899999999999999999999999999999999888887 89999999988876664555554444 567899
Q ss_pred CcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccce
Q 041325 283 KLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI 362 (450)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 362 (450)
+... ....+.+. .-.++.|+...+.-+.|+......+||+.++..+..+- ....+....-
T Consensus 1174 ~~s~-------~~~~Hsf~----ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tyl---------t~~~~~~y~~ 1233 (1516)
T KOG1832|consen 1174 ASST-------GGPRHSFD----EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYL---------TDTVTSSYSN 1233 (1516)
T ss_pred cccc-------cCcccccc----ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhc---------Ccchhhhhhc
Confidence 7431 11333332 34678888765555666666779999999987552211 1111112222
Q ss_pred EEEEEeCC-eEEEEeCCCeEEEeeCCCC
Q 041325 363 LCLAVVSN-LLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 363 ~~~~~~~~-~l~s~~~dg~v~iwd~~~~ 389 (450)
.+..|++. .|+- +||. +||++..
T Consensus 1234 n~a~FsP~D~LIl--ndGv--LWDvR~~ 1257 (1516)
T KOG1832|consen 1234 NLAHFSPCDTLIL--NDGV--LWDVRIP 1257 (1516)
T ss_pred cccccCCCcceEe--eCce--eeeeccH
Confidence 55666654 2221 4664 6888863
No 330
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.11 E-value=0.0044 Score=52.84 Aligned_cols=198 Identities=17% Similarity=0.221 Sum_probs=114.5
Q ss_pred CCEEEEeeCCCc-EEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEE-----eCCCeEEEEEcCC
Q 041325 85 GKLLYGGSSNGE-IRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSA-----HQDHKIRVWKIDN 156 (450)
Q Consensus 85 ~~~l~tgs~dg~-v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~-----~~dg~i~iw~~~~ 156 (450)
+..++.+-.-|+ ..+||..+++.......... -.+.||. .|++|+ |++. ...|.|-|||...
T Consensus 17 ~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~g----RHFyGHg------~fs~dG~~LytTEnd~~~g~G~IgVyd~~~ 86 (305)
T PF07433_consen 17 PEAVAFARRPGTFALVFDCRTGQLLQRLWAPPG----RHFYGHG------VFSPDGRLLYTTENDYETGRGVIGVYDAAR 86 (305)
T ss_pred CeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCC----CEEecCE------EEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence 444555555443 45778877776655333222 2366774 577666 5554 3358899999984
Q ss_pred CceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe-------
Q 041325 157 NTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS------- 229 (450)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------- 229 (450)
.- ..+..++ .|.-.-..+.+.|||+.|+++.
T Consensus 87 ~~---------------~ri~E~~---------------------------s~GIGPHel~l~pDG~tLvVANGGI~Thp 124 (305)
T PF07433_consen 87 GY---------------RRIGEFP---------------------------SHGIGPHELLLMPDGETLVVANGGIETHP 124 (305)
T ss_pred Cc---------------EEEeEec---------------------------CCCcChhhEEEcCCCCEEEEEcCCCccCc
Confidence 31 2222222 2333445667778886666552
Q ss_pred -----------CCCcEEEEecCCCeEEEEee---cccccceEEEEEeecCCcEEEEEcC-CC-------cEEEEeCcchh
Q 041325 230 -----------WDRTFKIWRTSDFRCLESVK---NAHDDAINAIVVSKSNDGFVYTGSA-DT-------KIKVWKKLRAA 287 (450)
Q Consensus 230 -----------~dg~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~-dg-------~i~vwd~~~~~ 287 (450)
.+-.+...|..+|+.+.+.. ..|.-.+..+++.+ ++.++.+.. .| .|.+++....-
T Consensus 125 d~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~--~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~ 202 (305)
T PF07433_consen 125 DSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG--DGTVAFAMQYQGDPGDAPPLVALHRRGGAL 202 (305)
T ss_pred ccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecC--CCcEEEEEecCCCCCccCCeEEEEcCCCcc
Confidence 12345556777888777643 13566788898885 344444332 11 12333321110
Q ss_pred hhccccchhhhhHhhcccceEEEEEcCCCCEEEEee-CCCcEEEEEcCCCcee
Q 041325 288 LQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA-CDRSILVWERDQGNYI 339 (450)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~ 339 (450)
. ...............+-+|++++++.++++.+ ..+.+.+||..+++.+
T Consensus 203 -~--~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~ 252 (305)
T PF07433_consen 203 -R--LLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLL 252 (305)
T ss_pred -e--eccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEe
Confidence 0 00001222334567899999999998876655 5678999999998765
No 331
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=98.09 E-value=0.0009 Score=59.54 Aligned_cols=183 Identities=19% Similarity=0.291 Sum_probs=117.0
Q ss_pred CcEEEEecCCCeEEEEeecccccceEEEEEeecC------CcEEEEEcC----------CCcEEEEeCcchhhhccccch
Q 041325 232 RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSN------DGFVYTGSA----------DTKIKVWKKLRAALQVNKKHS 295 (450)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~ 295 (450)
..|++.|..+.+.+..+.......+.+++...-. ..++++|+. .|.|.++++..... .....+
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~-~~~~l~ 80 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPE-NNFKLK 80 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS------EEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccc-cceEEE
Confidence 4689999998888877775566677776655422 346776653 28999999877410 001122
Q ss_pred hhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCc-eeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEE
Q 041325 296 LVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGN-YIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFS 374 (450)
Q Consensus 296 ~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s 374 (450)
.+... ..+++|++++-- +++ |+++. ++.|.+|++...+ .. ...... ....++++...+++++.
T Consensus 81 ~i~~~-~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~-----------~~~~~~-~~~~i~sl~~~~~~I~v 144 (321)
T PF03178_consen 81 LIHST-EVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLL-----------KKAFYD-SPFYITSLSVFKNYILV 144 (321)
T ss_dssp EEEEE-EESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEE-----------EEEEE--BSSSEEEEEEETTEEEE
T ss_pred EEEEE-eecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccch-----------hhheec-ceEEEEEEeccccEEEE
Confidence 22222 346888888766 444 54443 5889999998765 22 222222 23478899999999999
Q ss_pred EeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 375 GSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 375 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
|..-..+.++.++.. ......+.. ......++++.|.++++ .++.+..+|.|.++..
T Consensus 145 gD~~~sv~~~~~~~~----~~~l~~va~-d~~~~~v~~~~~l~d~~-------------~~i~~D~~gnl~~l~~ 201 (321)
T PF03178_consen 145 GDAMKSVSLLRYDEE----NNKLILVAR-DYQPRWVTAAEFLVDED-------------TIIVGDKDGNLFVLRY 201 (321)
T ss_dssp EESSSSEEEEEEETT----TE-EEEEEE-ESS-BEEEEEEEE-SSS-------------EEEEEETTSEEEEEEE
T ss_pred EEcccCEEEEEEEcc----CCEEEEEEe-cCCCccEEEEEEecCCc-------------EEEEEcCCCeEEEEEE
Confidence 999888988865531 111222222 23456789999987776 8999999999998864
No 332
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.03 E-value=0.0065 Score=51.85 Aligned_cols=157 Identities=17% Similarity=0.294 Sum_probs=95.8
Q ss_pred EEEccCCCEEEEEe-----CCCcEEEEecC-CCeEEEEeecccccceEEEEEeecCCcEEEE-Ec---------------
Q 041325 216 LALSSDGSLLYSTS-----WDRTFKIWRTS-DFRCLESVKNAHDDAINAIVVSKSNDGFVYT-GS--------------- 273 (450)
Q Consensus 216 ~~~~~~~~~l~~~~-----~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~-~~--------------- 273 (450)
-.|++||++|++.- ..|.|-|||.. +.+.+.++. .+.-....+.+.|+++.+++. |+
T Consensus 56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~-s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~ 134 (305)
T PF07433_consen 56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFP-SHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLD 134 (305)
T ss_pred EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEec-CCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence 46999999999864 35899999999 677888887 555556778888755433322 11
Q ss_pred -CCCcEEEEeCcchhhhccccchhhhh--H--hhcccceEEEEEcCCCCEEEEeeCCCc-------EEEEEcCCCceeee
Q 041325 274 -ADTKIKVWKKLRAALQVNKKHSLVQT--L--EKHKSAVTALALSTDGTVLYSGACDRS-------ILVWERDQGNYIVD 341 (450)
Q Consensus 274 -~dg~i~vwd~~~~~~~~~~~~~~~~~--~--~~~~~~i~~l~~~~~~~~l~~g~~dg~-------i~vwd~~~~~~~~~ 341 (450)
.+-++.+.|..+++ ++.. + ..|...|..+++.++|..++..-..|. |-+++.... +..
T Consensus 135 tM~psL~~ld~~sG~--------ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~ 204 (305)
T PF07433_consen 135 TMQPSLVYLDARSGA--------LLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRL 204 (305)
T ss_pred hcCCceEEEecCCCc--------eeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--cee
Confidence 12234444544444 2222 3 336778999999999877666554432 223322211 100
Q ss_pred CCCCCCceeeeccccCCccceEEEEEeCC---eEEEEeCCCeEEEeeCCCC
Q 041325 342 GDDDSGHMVLKGALRGHTKAILCLAVVSN---LLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~~~dg~v~iwd~~~~ 389 (450)
+.. .......-...+-+|+++.+ ..+|+=..|.+.+||..++
T Consensus 205 ~~~------p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg 249 (305)
T PF07433_consen 205 LPA------PEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATG 249 (305)
T ss_pred ccC------ChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCC
Confidence 000 00112233466788888754 4466667889999999875
No 333
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.02 E-value=0.001 Score=60.89 Aligned_cols=231 Identities=14% Similarity=0.110 Sum_probs=113.2
Q ss_pred cCCCceEEEEEeCCe-EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecce
Q 041325 125 GNGDAVKSLVVLGDK-LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKK 203 (450)
Q Consensus 125 ~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (450)
........+.++|++ +++.+.||...++.......
T Consensus 30 ~~~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~-------------------------------------------- 65 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRN-------------------------------------------- 65 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEE--------------------------------------------
T ss_pred CCCcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcc--------------------------------------------
Confidence 344467899999888 66667889988888443311
Q ss_pred eeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeC
Q 041325 204 CTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKK 283 (450)
Q Consensus 204 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 283 (450)
...+.....+|.+.++ +|+-...+.|.|+.--+.+....+.. ...+..|-. +.+|+..+. +.|.+||+
T Consensus 66 ----k~~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~~--~~~~~~If~----G~LL~~~~~-~~i~~yDw 133 (443)
T PF04053_consen 66 ----KAFGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIKL--PFSVEKIFG----GNLLGVKSS-DFICFYDW 133 (443)
T ss_dssp ----EEEEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT-------SS-EEEEE-----SSSEEEEET-TEEEEE-T
T ss_pred ----cccCceeEEEEecCcc-EEEEECCCeEEEEEcCccccceEEcC--CcccceEEc----CcEEEEECC-CCEEEEEh
Confidence 0122456678988554 66667688999963323333334431 222333322 335555444 48999999
Q ss_pred cchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceE
Q 041325 284 LRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAIL 363 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 363 (450)
.+++ .+..+.. ..|..+.|+++|++++..+.+ .+.|++........ ..+.+..........-...|.
T Consensus 134 ~~~~--------~i~~i~v--~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~--~~~~g~e~~f~~~~E~~~~Ik 200 (443)
T PF04053_consen 134 ETGK--------LIRRIDV--SAVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAA--IPEEGVEDAFELIHEISERIK 200 (443)
T ss_dssp TT----------EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHH--BTTTB-GGGEEEEEEE-S--S
T ss_pred hHcc--------eeeEEec--CCCcEEEEECCCCEEEEEeCC-eEEEEEecchhccc--ccccCchhceEEEEEecceeE
Confidence 7766 5555542 248999999999999988755 67777765320000 000000000011111146788
Q ss_pred EEEEeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCc
Q 041325 364 CLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCE 443 (450)
Q Consensus 364 ~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~ 443 (450)
+..|.++.++-.... .++.+ -.| ....+..+ ..++.=+.+.+... .+.....|+.
T Consensus 201 Sg~W~~d~fiYtT~~-~lkYl--~~G------e~~~i~~l---d~~~yllgy~~~~~-------------~ly~~Dr~~~ 255 (443)
T PF04053_consen 201 SGCWVEDCFIYTTSN-HLKYL--VNG------ETGIIAHL---DKPLYLLGYLPKEN-------------RLYLIDRDGN 255 (443)
T ss_dssp EEEEETTEEEEE-TT-EEEEE--ETT------EEEEEEE----SS--EEEEEETTTT-------------EEEEE-TT--
T ss_pred EEEEEcCEEEEEcCC-eEEEE--EcC------CcceEEEc---CCceEEEEEEccCC-------------EEEEEECCCC
Confidence 888988854444444 67663 222 01222322 35666677777666 7888888888
Q ss_pred EEEEEe
Q 041325 444 IKIWQI 449 (450)
Q Consensus 444 i~iw~l 449 (450)
|..+.|
T Consensus 256 v~~~~l 261 (443)
T PF04053_consen 256 VISYEL 261 (443)
T ss_dssp EEEEE-
T ss_pred EEEEEE
Confidence 887765
No 334
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.02 E-value=0.0017 Score=58.64 Aligned_cols=210 Identities=16% Similarity=0.178 Sum_probs=109.7
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEE-------------------------------------------EEe
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCL-------------------------------------------ESV 248 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-------------------------------------------~~~ 248 (450)
.|+.+.|.++...|++|...|.|.||.....+.. ..+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 4788888888788888888888888854321111 111
Q ss_pred ecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcC-----CC---CEEE
Q 041325 249 KNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST-----DG---TVLY 320 (450)
Q Consensus 249 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-----~~---~~l~ 320 (450)
....++|.+++.+ +=++++.|..+|.+.|.|+|....-..........-......++++.|.. |+ -.|+
T Consensus 83 -~~~~g~vtal~~S--~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 -DAKQGPVTALKNS--DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp ----S-SEEEEEE---BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred -eccCCcEeEEecC--CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 1346789999987 67799999999999999997765322211111001122345678888863 33 4789
Q ss_pred EeeCCCcEEEEEcCC---CceeeeCCCCCCceeeeccccCCccceEEEEE-e-------------------C---CeEEE
Q 041325 321 SGACDRSILVWERDQ---GNYIVDGDDDSGHMVLKGALRGHTKAILCLAV-V-------------------S---NLLFS 374 (450)
Q Consensus 321 ~g~~dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~-------------------~---~~l~s 374 (450)
+|+..|.+.+|.+.- +... .........+.++|..+.. + + +-++.
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~---------v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vV 230 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFS---------VQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVV 230 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EE---------EEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEE
T ss_pred EEeCCCCEEEEEEecCCCCceE---------EEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEE
Confidence 999999999998752 1111 1111222234455544442 1 0 12333
Q ss_pred EeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 375 GSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 375 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
...+..+|++...+. +.........-....+.+.+-.. ...+..|++-..+|.|+++.|
T Consensus 231 vvSe~~irv~~~~~~--------k~~~K~~~~~~~~~~~~vv~~~~--------~~~~~~Lv~l~~~G~i~i~SL 289 (395)
T PF08596_consen 231 VVSESDIRVFKPPKS--------KGAHKSFDDPFLCSSASVVPTIS--------RNGGYCLVCLFNNGSIRIYSL 289 (395)
T ss_dssp EE-SSEEEEE-TT-----------EEEEE-SS-EEEEEEEEEEEE---------EEEEEEEEEEETTSEEEEEET
T ss_pred EEcccceEEEeCCCC--------cccceeeccccccceEEEEeecc--------cCCceEEEEEECCCcEEEEEC
Confidence 444667999988764 22222222222333444432000 001227888889999999865
No 335
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.01 E-value=0.012 Score=54.04 Aligned_cols=70 Identities=13% Similarity=0.072 Sum_probs=45.9
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEE
Q 041325 304 KSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRI 383 (450)
Q Consensus 304 ~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~i 383 (450)
.+++..|+.||++++++.-..+|.+.+....-.+.+.+.+. . -......+.|.|+-.+....+..|.+
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~-----------~-~~~~p~~~~WCG~dav~l~~~~~l~l 283 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT-----------D-SKSPPKQMAWCGNDAVVLSWEDELLL 283 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec-----------C-cCCCCcEEEEECCCcEEEEeCCEEEE
Confidence 46899999999999999999999999988765544422111 1 23345678888763222223445555
Q ss_pred ee
Q 041325 384 WR 385 (450)
Q Consensus 384 wd 385 (450)
..
T Consensus 284 vg 285 (410)
T PF04841_consen 284 VG 285 (410)
T ss_pred EC
Confidence 54
No 336
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.00 E-value=0.0085 Score=52.06 Aligned_cols=247 Identities=17% Similarity=0.170 Sum_probs=128.2
Q ss_pred eCCEEEEeeCCCcEEEecC-CCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEEEcCCCceeE
Q 041325 84 AGKLLYGGSSNGEIRAWNR-DPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVWKIDNNTSAY 161 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~~~~~~~~~ 161 (450)
.++.|+.|+.+| +.+++. ........ .+...|..+...++. ++..-.|+.+.++++..-....
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i--------------~~~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~ 70 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRI--------------LKLSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVS 70 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeE--------------eecceEEEEEEecccCEEEEEcCCccEEEEchhhcccc
Confidence 688999999998 899988 22222222 223349999998866 4444456999999998764321
Q ss_pred EeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEE--EccCCCEEEEEeCCCcEEEEec
Q 041325 162 YSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALA--LSSDGSLLYSTSWDRTFKIWRT 239 (450)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~~~dg~i~iwd~ 239 (450)
......... .. ...........+...+ -...+...++......|.+|..
T Consensus 71 ~~~~~~~~~-----~~------------------------~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~ 121 (275)
T PF00780_consen 71 TSAPLAFPK-----SR------------------------SLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEW 121 (275)
T ss_pred ccccccccc-----cc------------------------cccccccccCCeeEEeeccccccceEEEEEECCEEEEEEE
Confidence 110000000 00 0000001222344444 1123333333444558888877
Q ss_pred CCC-----eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc----chhhhhHhhcccceEEE
Q 041325 240 SDF-----RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK----HSLVQTLEKHKSAVTAL 310 (450)
Q Consensus 240 ~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~----~~~~~~~~~~~~~i~~l 310 (450)
... +..+++. ....+.+++|. ++ .++.|..+ ...+.|+.++....-.. ............++..+
T Consensus 122 ~~~~~~f~~~~ke~~--lp~~~~~i~~~--~~-~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 195 (275)
T PF00780_consen 122 NDPRNSFSKLLKEIS--LPDPPSSIAFL--GN-KICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIF 195 (275)
T ss_pred ECCcccccceeEEEE--cCCCcEEEEEe--CC-EEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEE
Confidence 653 4555554 56889999998 34 66666654 47888987654211000 00000111112233334
Q ss_pred EEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCCCc
Q 041325 311 ALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSV 390 (450)
Q Consensus 311 ~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 390 (450)
... ++.+|++- |..-...|. .|+.. ....+.- .....++++...+|++.+.+ .|.||++.++
T Consensus 196 ~~~-~~e~Ll~~--~~~g~fv~~-~G~~~-----------r~~~i~W-~~~p~~~~~~~pyli~~~~~-~iEV~~~~~~- 257 (275)
T PF00780_consen 196 QLS-DNEFLLCY--DNIGVFVNK-NGEPS-----------RKSTIQW-SSAPQSVAYSSPYLIAFSSN-SIEVRSLETG- 257 (275)
T ss_pred EeC-CceEEEEe--cceEEEEcC-CCCcC-----------cccEEEc-CCchhEEEEECCEEEEECCC-EEEEEECcCC-
Confidence 443 45666543 222223333 33211 0011111 23456788887888887765 4999999985
Q ss_pred cccCCCceeEEEecC
Q 041325 391 TDHQKGYSCLAVLEG 405 (450)
Q Consensus 391 ~~~~~~~~~~~~~~~ 405 (450)
+.++.+..
T Consensus 258 -------~lvQ~i~~ 265 (275)
T PF00780_consen 258 -------ELVQTIPL 265 (275)
T ss_pred -------cEEEEEEC
Confidence 55666553
No 337
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.99 E-value=0.013 Score=53.85 Aligned_cols=209 Identities=6% Similarity=-0.002 Sum_probs=108.3
Q ss_pred ccceeeeEEeecCCCcceEEEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe
Q 041325 61 SEHQCSATLKVKGNSSYIPSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK 139 (450)
Q Consensus 61 ~~~~~~~~l~~~~h~~~v~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 139 (450)
..++++.++.... +.|.++.| +...|+.-..||.++++|+.... ... ..... ....-....+....+..++
T Consensus 68 ~sG~ll~~i~w~~--~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fs--l~~~i---~~~~v~e~~i~~~~~~~~G 139 (410)
T PF04841_consen 68 SSGKLLSSIPWDS--GRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFS--LGEEI---EEEKVLECRIFAIWFYKNG 139 (410)
T ss_pred CCCCEeEEEEECC--CCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eec--hhhhc---cccCcccccccccccCCCC
Confidence 4456777777544 89999999 67788888899999999986443 111 00000 0011112233344455566
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCccccc-----ceeeeee--ccCCCcceeEeeecCceEE-EeecceeeeecCCC
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNK-----YYERIAT--LPTLNDRFTKCFLANNYVQ-VRRHKKCTWVHHVD 211 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 211 (450)
++.-..++.+.+-+--..... .......+.. ....... .........+....+..+. +....... ....+
T Consensus 140 ivvLt~~~~~~~v~n~~~~~~-~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~-i~~~~ 217 (410)
T PF04841_consen 140 IVVLTGNNRFYVVNNIDEPVK-LRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ-IDSDG 217 (410)
T ss_pred EEEECCCCeEEEEeCccccch-hhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc-ccCCC
Confidence 555555555544432221100 0000000000 0000000 0111111122222222222 22111101 12246
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEe
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWK 282 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd 282 (450)
++..|+.||+++++|.-..+|.+.+.+..-.+....+..........+.|+ ++..++..- ...+.++.
T Consensus 218 ~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WC--G~dav~l~~-~~~l~lvg 285 (410)
T PF04841_consen 218 PIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWC--GNDAVVLSW-EDELLLVG 285 (410)
T ss_pred CeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEE--CCCcEEEEe-CCEEEEEC
Confidence 899999999999999999999999998776777777764545677888888 443333333 34555554
No 338
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.90 E-value=0.00044 Score=65.35 Aligned_cols=68 Identities=15% Similarity=0.181 Sum_probs=55.7
Q ss_pred eEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEE
Q 041325 78 IPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWK 153 (450)
Q Consensus 78 v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~ 153 (450)
+++++| ..-.|+.|-.-|.+.+|+..+.+.... ...|..+|..+.|++++ ++++..-|.|.+|.
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv------------~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr 129 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV------------VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWR 129 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEecCCceeeee------------ccCCCCCceeEEecCCCCeEEEcCCCceeEEEE
Confidence 556888 466788888899999999877664333 45799999999999887 99999999999999
Q ss_pred cCCC
Q 041325 154 IDNN 157 (450)
Q Consensus 154 ~~~~ 157 (450)
.+..
T Consensus 130 ~d~~ 133 (1416)
T KOG3617|consen 130 YDVI 133 (1416)
T ss_pred eeec
Confidence 8743
No 339
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.90 E-value=0.0034 Score=55.87 Aligned_cols=214 Identities=15% Similarity=0.185 Sum_probs=121.3
Q ss_pred CCccceeeeEEeecCCCcceEEEEE---e------CCEEEEeeC----------CCcEEEecCCCC-----CceeeeecC
Q 041325 59 AASEHQCSATLKVKGNSSYIPSLAI---A------GKLLYGGSS----------NGEIRAWNRDPN-----NYVNITSTD 114 (450)
Q Consensus 59 ~~~~~~~~~~l~~~~h~~~v~~~~~---d------~~~l~tgs~----------dg~v~vw~~~~~-----~~~~~~~~~ 114 (450)
...+.+.+.++.+.. ...+.+++. . ..+|+.|+. .|.|.++++... ++...
T Consensus 8 d~~~~~~~~~~~l~~-~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i---- 82 (321)
T PF03178_consen 8 DPTTFEVLDSFELEP-NEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI---- 82 (321)
T ss_dssp ETTTSSEEEEEEEET-TEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE----
T ss_pred eCCCCeEEEEEECCC-CceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE----
Confidence 334456667777654 344555444 2 467887753 288999998874 22111
Q ss_pred CCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCc-eeEEeccCcccccceeeeeeccCCCcceeEeeecC
Q 041325 115 VGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNT-SAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLAN 193 (450)
Q Consensus 115 ~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (450)
.-....++|++++-..+.|+.+. .+.|.+|++...+ .. ....
T Consensus 83 -------~~~~~~g~V~ai~~~~~~lv~~~-g~~l~v~~l~~~~~l~--------------~~~~--------------- 125 (321)
T PF03178_consen 83 -------HSTEVKGPVTAICSFNGRLVVAV-GNKLYVYDLDNSKTLL--------------KKAF--------------- 125 (321)
T ss_dssp -------EEEEESS-EEEEEEETTEEEEEE-TTEEEEEEEETTSSEE--------------EEEE---------------
T ss_pred -------EEEeecCcceEhhhhCCEEEEee-cCEEEEEEccCcccch--------------hhhe---------------
Confidence 22345689999999887755544 4899999999873 10 0000
Q ss_pred ceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCC-CeEEEEe-ecccccceEEEEEeecCCcEEEE
Q 041325 194 NYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSD-FRCLESV-KNAHDDAINAIVVSKSNDGFVYT 271 (450)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~ 271 (450)
....-.+.++... +++++.|.....+.++..+. ...+..+ +......+.++.+.++++ .+++
T Consensus 126 -------------~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~ 189 (321)
T PF03178_consen 126 -------------YDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIV 189 (321)
T ss_dssp -------------E-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEE
T ss_pred -------------ecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEE
Confidence 0112245555544 66999999888888775443 3323333 323456788888886554 8999
Q ss_pred EcCCCcEEEEeCcchhhhccc---cchhhhhHhhcccceEEE---EEcC--CCC------EEEEeeCCCcEEEE
Q 041325 272 GSADTKIKVWKKLRAALQVNK---KHSLVQTLEKHKSAVTAL---ALST--DGT------VLYSGACDRSILVW 331 (450)
Q Consensus 272 ~~~dg~i~vwd~~~~~~~~~~---~~~~~~~~~~~~~~i~~l---~~~~--~~~------~l~~g~~dg~i~vw 331 (450)
+..+|.+.++........... .......+. ....|+++ ++.| .+. .++.++.+|.|.+.
T Consensus 190 ~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 190 GDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp EETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 999999999987532111011 111112221 23556666 4444 122 47888889988844
No 340
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.89 E-value=0.03 Score=54.67 Aligned_cols=161 Identities=14% Similarity=0.201 Sum_probs=95.7
Q ss_pred cEEEEecCCCeEEEEeecccccc---eEEEEEeecCCcEEEEEcC----------CCcEEEEeCcchhhhccccchhhhh
Q 041325 233 TFKIWRTSDFRCLESVKNAHDDA---INAIVVSKSNDGFVYTGSA----------DTKIKVWKKLRAALQVNKKHSLVQT 299 (450)
Q Consensus 233 ~i~iwd~~~~~~~~~~~~~~~~~---v~~~~~~~~~~~~l~~~~~----------dg~i~vwd~~~~~~~~~~~~~~~~~ 299 (450)
.++++|-++.+.+...+...... +.++.|..+.+.++++|+. .|.|.++.+.... ..+.+..
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~-----~L~~v~e 825 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELN-----SLELVAE 825 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCC-----ceeeeee
Confidence 47788888877766554333333 4444577655667777653 5778888876521 1112222
Q ss_pred HhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEE--eCCeEEEEeC
Q 041325 300 LEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV--VSNLLFSGSS 377 (450)
Q Consensus 300 ~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 377 (450)
.. -++.+.++..- +|+++|. -+..|++|++.+.+.+ +.-..+..++..+.. .++.++.|.-
T Consensus 826 ~~-v~Gav~aL~~f-ngkllA~--In~~vrLye~t~~~eL-------------r~e~~~~~~~~aL~l~v~gdeI~VgDl 888 (1096)
T KOG1897|consen 826 TV-VKGAVYALVEF-NGKLLAG--INQSVRLYEWTTEREL-------------RIECNISNPIIALDLQVKGDEIAVGDL 888 (1096)
T ss_pred ee-eccceeehhhh-CCeEEEe--cCcEEEEEEcccccee-------------hhhhcccCCeEEEEEEecCcEEEEeec
Confidence 22 22344444322 6776654 4578999999877544 344455566655554 5899999998
Q ss_pred CCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 378 DNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 378 dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
-+.+.+...+.. +.....+ .-..+....+++.+-.+..
T Consensus 889 m~Sitll~y~~~----eg~f~ev-ArD~~p~Wmtaveil~~d~ 926 (1096)
T KOG1897|consen 889 MRSITLLQYKGD----EGNFEEV-ARDYNPNWMTAVEILDDDT 926 (1096)
T ss_pred cceEEEEEEecc----CCceEEe-ehhhCccceeeEEEecCce
Confidence 888877766542 1112222 2234677888888877665
No 341
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.84 E-value=0.0018 Score=45.68 Aligned_cols=100 Identities=20% Similarity=0.310 Sum_probs=69.3
Q ss_pred eEEEEEcc---CC-CEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhh
Q 041325 213 VSALALSS---DG-SLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAAL 288 (450)
Q Consensus 213 v~~~~~~~---~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 288 (450)
|++|++.. +| +.|++|+.|..|++|+-. +.+.++. ..+.|.++.-. ....++.+..+|+|-+|+-....
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~--e~~~v~~L~~~--~~~~F~Y~l~NGTVGvY~~~~Rl- 74 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEIT--ETDKVTSLCSL--GGGRFAYALANGTVGVYDRSQRL- 74 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEe--cccceEEEEEc--CCCEEEEEecCCEEEEEeCccee-
Confidence 56666654 32 579999999999999864 5667775 56778888877 45689999999999999853321
Q ss_pred hccccchhhhhHhhcccceEEEEEcC-CC---CEEEEeeCCCcEE
Q 041325 289 QVNKKHSLVQTLEKHKSAVTALALST-DG---TVLYSGACDRSIL 329 (450)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~i~~l~~~~-~~---~~l~~g~~dg~i~ 329 (450)
...+ .+..++++++.. ++ .-|++|-.+|.|-
T Consensus 75 ---------WRiK-SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 75 ---------WRIK-SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ---------eeec-cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 1222 234466666543 32 3688888888774
No 342
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.81 E-value=0.0059 Score=49.82 Aligned_cols=108 Identities=10% Similarity=0.059 Sum_probs=80.2
Q ss_pred CCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHh
Q 041325 222 GSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLE 301 (450)
Q Consensus 222 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 301 (450)
..+++.|+..+.+.-.|..+|+...+-. ....+.+-+.. -+++++.|+..|.+++.+..++. ....+.
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~We~i--lg~RiE~sa~v--vgdfVV~GCy~g~lYfl~~~tGs--------~~w~f~ 90 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI--LGVRIECSAIV--VGDFVVLGCYSGGLYFLCVKTGS--------QIWNFV 90 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEEeehh--hCceeeeeeEE--ECCEEEEEEccCcEEEEEecchh--------heeeee
Confidence 5678889999999999999998876654 44555554444 23489999999999999998875 333333
Q ss_pred hcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeee
Q 041325 302 KHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVD 341 (450)
Q Consensus 302 ~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~ 341 (450)
....--......+++.++..|+.|++.+..|.++..+++.
T Consensus 91 ~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyk 130 (354)
T KOG4649|consen 91 ILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYK 130 (354)
T ss_pred ehhhhccceEEcCCCceEEEecCCCcEEEecccccceEEe
Confidence 2222223345667899999999999999999999887754
No 343
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.81 E-value=0.0079 Score=56.46 Aligned_cols=83 Identities=16% Similarity=0.129 Sum_probs=52.0
Q ss_pred ccceEEEEEcCCCCEEEEeeC-CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCe
Q 041325 304 KSAVTALALSTDGTVLYSGAC-DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNT 380 (450)
Q Consensus 304 ~~~i~~l~~~~~~~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~ 380 (450)
......++++|||+++++++. +.+|.|+|+.+.+..+...-+...... .+..--.++ ...+|++ +...|-.-|..
T Consensus 320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vv-aevevGlGP-LHTaFDg~G~aytslf~dsq 397 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVV-AEPELGLGP-LHTAFDGRGNAYTTLFLDSQ 397 (635)
T ss_pred CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEE-EeeccCCCc-ceEEECCCCCEEEeEeecce
Confidence 455688999999998877654 899999999986643221111111111 111111122 3455664 47777888999
Q ss_pred EEEeeCCC
Q 041325 381 IRIWRRSS 388 (450)
Q Consensus 381 v~iwd~~~ 388 (450)
|..||+..
T Consensus 398 v~kwn~~~ 405 (635)
T PRK02888 398 IVKWNIEA 405 (635)
T ss_pred eEEEehHH
Confidence 99999886
No 344
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.79 E-value=9.2e-05 Score=58.86 Aligned_cols=140 Identities=16% Similarity=0.164 Sum_probs=88.7
Q ss_pred EEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCC
Q 041325 268 FVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSG 347 (450)
Q Consensus 268 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~ 347 (450)
.+...+.||.|+-++++..+. ..+....+......+. -+..+++|+.+|.|++|.....-..
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~-------s~rse~~~~e~~~v~~---~~~~~~vG~~dg~v~~~n~n~~g~~-------- 93 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKE-------SCRSERFIDEGQRVVT---ASAKLMVGTSDGAVYVFNWNLEGAH-------- 93 (238)
T ss_pred hhccccCCcccccchhhhhhh-------hhhhhhhhhcceeecc---cCceEEeecccceEEEecCCccchH--------
Confidence 466677889998888865441 1111111222212222 3567999999999999988721100
Q ss_pred ceeeeccccCCccceEEEEEe---CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCC-cceEEEEEEecCCCCC
Q 041325 348 HMVLKGALRGHTKAILCLAVV---SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHR-RPVKCLTAVVDSDYSN 423 (450)
Q Consensus 348 ~~~~~~~~~~~~~~v~~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~~ 423 (450)
......-...|.++... +.+..+++.||.||.|++... +.+.....|. .++..+..+..++
T Consensus 94 ----~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~--------k~~g~~g~h~~~~~e~~ivv~sd~--- 158 (238)
T KOG2444|consen 94 ----SDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN--------KVLGYVGQHNFESGEELIVVGSDE--- 158 (238)
T ss_pred ----HHhhhcccccceeccccccccceeEEeccCCceeeeccccC--------ceeeeeccccCCCcceeEEecCCc---
Confidence 01112222344444444 238899999999999998853 5666666777 6677776666666
Q ss_pred CCCCCCCceEEEEEc--ccCCcEEEEEeC
Q 041325 424 RNSDHSSTSFLVYSG--SLDCEIKIWQIR 450 (450)
Q Consensus 424 ~~~~~~~~~~~l~s~--~~Dg~i~iw~l~ 450 (450)
+++.+ |.|..++.|+|+
T Consensus 159 ----------~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 159 ----------FLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ----------eEEeeccccchhhhhcchh
Confidence 78888 888899999874
No 345
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.77 E-value=0.017 Score=48.39 Aligned_cols=197 Identities=11% Similarity=0.076 Sum_probs=103.8
Q ss_pred cCCCceEEEEEccCCC-EEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcch
Q 041325 208 HHVDTVSALALSSDGS-LLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 286 (450)
+-...+..++|+|+.+ ++++....+.|..++. +|+.+..+.....+....|++.. ++.++++.-.++.+.++++...
T Consensus 19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~ 96 (248)
T PF06977_consen 19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDD 96 (248)
T ss_dssp T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE---
T ss_pred CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEecc
Confidence 4555799999999755 6666677888888887 57888888755557788999983 3334555556899999988443
Q ss_pred hhhccccc-h--hhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeecc---ccCCcc
Q 041325 287 ALQVNKKH-S--LVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGA---LRGHTK 360 (450)
Q Consensus 287 ~~~~~~~~-~--~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 360 (450)
........ . .+.....++..+-.++|+|.++.|+.+-+..-..+|.+.... ............ ......
T Consensus 97 ~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 171 (248)
T PF06977_consen 97 TTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFP-----GGFDLFVSDDQDLDDDKLFVR 171 (248)
T ss_dssp -TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT------SS--EEEE-HHHH-HT--SS
T ss_pred ccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEcccc-----Cccceeeccccccccccceec
Confidence 21110100 0 111112456678999999988888888777667777766411 000000000011 122334
Q ss_pred ceEEEEEeCC---eEEEEeCCCeEEEeeCCCCccccCCCceeEE--EecC-C------CcceEEEEEEecCC
Q 041325 361 AILCLAVVSN---LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLA--VLEG-H------RRPVKCLTAVVDSD 420 (450)
Q Consensus 361 ~v~~~~~~~~---~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~--~~~~-h------~~~v~~l~~~~~~~ 420 (450)
.+.++++++. +++....+..|..+|..- +.+. .+.. . -...-.|+|.++|.
T Consensus 172 d~S~l~~~p~t~~lliLS~es~~l~~~d~~G---------~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~ 234 (248)
T PF06977_consen 172 DLSGLSYDPRTGHLLILSDESRLLLELDRQG---------RVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN 234 (248)
T ss_dssp ---EEEEETTTTEEEEEETTTTEEEEE-TT-----------EEEEEE-STTGGG-SS---SEEEEEE-TT--
T ss_pred cccceEEcCCCCeEEEEECCCCeEEEECCCC---------CEEEEEEeCCcccCcccccCCccEEEECCCCC
Confidence 5788888854 777888888999998552 2332 2222 1 12467899999887
No 346
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.73 E-value=0.022 Score=49.52 Aligned_cols=118 Identities=11% Similarity=0.198 Sum_probs=71.2
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEe-------------ecccccceEEEE-EeecCCcEEEEEcCCCc
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESV-------------KNAHDDAINAIV-VSKSNDGFVYTGSADTK 277 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------------~~~~~~~v~~~~-~~~~~~~~l~~~~~dg~ 277 (450)
.|..+...++-+.+++-+ |+.+.++++........- .......+...+ .........++......
T Consensus 37 ~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~ 115 (275)
T PF00780_consen 37 SITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKK 115 (275)
T ss_pred eEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEECCE
Confidence 488899988777777665 599999998865544311 112233444444 11222333444444558
Q ss_pred EEEEeCcchhhhccccc-hhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCce
Q 041325 278 IKVWKKLRAALQVNKKH-SLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNY 338 (450)
Q Consensus 278 i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~ 338 (450)
|.+|...... ... ...+++. ....+..++|. ++.|+.|..++ ..+.|+.++..
T Consensus 116 i~i~~~~~~~----~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~ 169 (275)
T PF00780_consen 116 ILIYEWNDPR----NSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSP 169 (275)
T ss_pred EEEEEEECCc----ccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCc
Confidence 9998876532 111 2333333 34778899998 56777777554 77889986653
No 347
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.68 E-value=0.00011 Score=41.40 Aligned_cols=38 Identities=34% Similarity=0.538 Sum_probs=33.6
Q ss_pred eeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 398 SCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 398 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
.+...+..|...|.++.|.+++. ++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~-------------~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGK-------------YLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCC-------------EEEEecCCCeEEEcC
Confidence 45666778999999999999888 999999999999996
No 348
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.66 E-value=0.025 Score=49.30 Aligned_cols=142 Identities=12% Similarity=0.165 Sum_probs=85.4
Q ss_pred ceEEEEEccCCCEEEEEeC---------CCcEEEEecC-CCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEE
Q 041325 212 TVSALALSSDGSLLYSTSW---------DRTFKIWRTS-DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVW 281 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~---------dg~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw 281 (450)
..+.+...|+|.+.++... ...-.+|-+. .+..+..+. .+-..-+.|+|+|+++.++++=+..+.|.-|
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~-~~~~~~NGla~SpDg~tly~aDT~~~~i~r~ 190 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLD-DDLTIPNGLAFSPDGKTLYVADTPANRIHRY 190 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeec-CcEEecCceEECCCCCEEEEEeCCCCeEEEE
Confidence 4566777777775554332 0111344444 455555554 4566779999999887677777777889988
Q ss_pred eCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCC-cEEEEEcCCCceeeeCCCCCCceeeeccccCCcc
Q 041325 282 KKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDR-SILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK 360 (450)
Q Consensus 282 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (450)
++.......... .....+....+..-.++...+|.+.+++..+| .|.+|+.. ++.+ ....-...
T Consensus 191 ~~d~~~g~~~~~-~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~-------------~~i~lP~~ 255 (307)
T COG3386 191 DLDPATGPIGGR-RGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLL-------------GEIKLPVK 255 (307)
T ss_pred ecCcccCccCCc-ceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEE-------------EEEECCCC
Confidence 875311000011 11112222345566778888888776555554 89999988 6655 33333336
Q ss_pred ceEEEEEeC
Q 041325 361 AILCLAVVS 369 (450)
Q Consensus 361 ~v~~~~~~~ 369 (450)
.+++++|.+
T Consensus 256 ~~t~~~FgG 264 (307)
T COG3386 256 RPTNPAFGG 264 (307)
T ss_pred CCccceEeC
Confidence 678888876
No 349
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.66 E-value=0.00017 Score=40.50 Aligned_cols=37 Identities=35% Similarity=0.619 Sum_probs=32.2
Q ss_pred ceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEec
Q 041325 63 HQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWN 101 (450)
Q Consensus 63 ~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~ 101 (450)
.++...+. +|...|.++.+ ++.++++++.||.+++|+
T Consensus 2 ~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLK--GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEE--ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 35667777 89999999999 478999999999999996
No 350
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.00036 Score=63.73 Aligned_cols=91 Identities=16% Similarity=0.171 Sum_probs=73.6
Q ss_pred CceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceee
Q 041325 128 DAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCT 205 (450)
Q Consensus 128 ~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (450)
..|.-+.|+|.. +|.+..+|.|.+..+.- +++.++|.
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~-----------------qRlwtip~------------------------ 59 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNW-----------------QRLWTIPI------------------------ 59 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEecc-----------------ceeEeccC------------------------
Confidence 467888999887 89999999999988873 45555553
Q ss_pred eecCCCceE-EEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEe
Q 041325 206 WVHHVDTVS-ALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVS 262 (450)
Q Consensus 206 ~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 262 (450)
|...++ +++|.|||+.++.|-.||+|++.|++++..+..........|.++-|.
T Consensus 60 ---p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 60 ---PGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLVSFLFSVETDISKGIWD 114 (665)
T ss_pred ---CCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCceeccccccccchheeecc
Confidence 334555 999999999999999999999999999988877543466778888886
No 351
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.53 E-value=0.01 Score=41.99 Aligned_cols=103 Identities=20% Similarity=0.250 Sum_probs=66.1
Q ss_pred eEEEEEcC---CC-CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe-CCeEEEEeCCCeE
Q 041325 307 VTALALST---DG-TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV-SNLLFSGSSDNTI 381 (450)
Q Consensus 307 i~~l~~~~---~~-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~v 381 (450)
|++|++.. || +.|++|+.|..|++|+-.. ....+.. ...|+++... +..++.+..+|+|
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e---------------~~~Ei~e-~~~v~~L~~~~~~~F~Y~l~NGTV 65 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE---------------IVAEITE-TDKVTSLCSLGGGRFAYALANGTV 65 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc---------------EEEEEec-ccceEEEEEcCCCEEEEEecCCEE
Confidence 56666654 32 5899999999999998663 1223332 3556666665 5689999999999
Q ss_pred EEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEE
Q 041325 382 RIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIK 445 (450)
Q Consensus 382 ~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~ 445 (450)
-+|+-.. .+...+... .++++.+..-.. .+..-|++|=.+|.|-
T Consensus 66 GvY~~~~----------RlWRiKSK~-~~~~~~~~D~~g---------dG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 66 GVYDRSQ----------RLWRIKSKN-QVTSMAFYDING---------DGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEeCcc----------eeeeeccCC-CeEEEEEEcCCC---------CCceEEEEEecCCeEE
Confidence 9998652 233333323 366665543321 1223688888888764
No 352
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.51 E-value=0.091 Score=49.77 Aligned_cols=108 Identities=12% Similarity=0.202 Sum_probs=62.0
Q ss_pred EEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEE------------------cCCCcEEEEeCcc
Q 041325 224 LLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTG------------------SADTKIKVWKKLR 285 (450)
Q Consensus 224 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~------------------~~dg~i~vwd~~~ 285 (450)
.++.++.+|.+...|.++|+.+-..... ...+...| +.++.+ ..+|.+.-.|+.+
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~---~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~t 375 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP---GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKT 375 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC---ceEEEccccccccCcccccCCCCCCCceEEEEEeCCC
Confidence 5778889999999999999988776521 11122222 222221 2356777778777
Q ss_pred hhhhccccchhhhhHhhcccce--EEEEEcCCCCEEEEeeCCCcEEEEEcCCCceee
Q 041325 286 AALQVNKKHSLVQTLEKHKSAV--TALALSTDGTVLYSGACDRSILVWERDQGNYIV 340 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~i--~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~ 340 (450)
++..-................. ..+.. .+..|++++.||.|+.+|..+|+.+.
T Consensus 376 G~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~tG~~lW 430 (488)
T cd00216 376 GKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDATTGKELW 430 (488)
T ss_pred CcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECCCCceee
Confidence 6621100000000000000111 12222 56789999999999999999998774
No 353
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.50 E-value=0.015 Score=56.70 Aligned_cols=100 Identities=12% Similarity=0.230 Sum_probs=70.9
Q ss_pred EEEEEeCCCcEEEEecCCCe--EEEE-e-ecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhh
Q 041325 224 LLYSTSWDRTFKIWRTSDFR--CLES-V-KNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQT 299 (450)
Q Consensus 224 ~l~~~~~dg~i~iwd~~~~~--~~~~-~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 299 (450)
..+.|-.++.+..||.+-.. .+.. . .-.......|++-. .+++||+|+.+|.||+||-. +. .....
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt--~~G~iavgs~~G~IRLyd~~-g~-------~AKT~ 613 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATT--EDGYIAVGSNKGDIRLYDRL-GK-------RAKTA 613 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEec--CCceEEEEeCCCcEEeeccc-ch-------hhhhc
Confidence 45667778999999998532 2211 1 11234456666666 78899999999999999942 21 13444
Q ss_pred HhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcC
Q 041325 300 LEKHKSAVTALALSTDGTVLYSGACDRSILVWERD 334 (450)
Q Consensus 300 ~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~ 334 (450)
+.+...+|..|..+.||++|++.+ +..|.+++..
T Consensus 614 lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 614 LPGLGDPIIGIDVTADGKWILATC-KTYLLLIDTL 647 (794)
T ss_pred CCCCCCCeeEEEecCCCcEEEEee-cceEEEEEEe
Confidence 556789999999999999998766 5667787763
No 354
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=0.00049 Score=62.86 Aligned_cols=77 Identities=19% Similarity=0.230 Sum_probs=62.6
Q ss_pred ccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceE-EEEEcCCCCEEEEeeCCCcEEEE
Q 041325 253 DDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVT-ALALSTDGTVLYSGACDRSILVW 331 (450)
Q Consensus 253 ~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~-~l~~~~~~~~l~~g~~dg~i~vw 331 (450)
...+..+.|+|..+ ++|.+..+|.|.+..+. +..+.++..+...++ +++|.|||++|++|-.||+|++.
T Consensus 20 ~~~i~~~ewnP~~d-LiA~~t~~gelli~R~n---------~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~ 89 (665)
T KOG4640|consen 20 PINIKRIEWNPKMD-LIATRTEKGELLIHRLN---------WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLH 89 (665)
T ss_pred ccceEEEEEcCccc-hhheeccCCcEEEEEec---------cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEE
Confidence 35678899998554 89999999999888764 224555655666666 99999999999999999999999
Q ss_pred EcCCCcee
Q 041325 332 ERDQGNYI 339 (450)
Q Consensus 332 d~~~~~~~ 339 (450)
|..++..+
T Consensus 90 Dve~~~~l 97 (665)
T KOG4640|consen 90 DVEKGGRL 97 (665)
T ss_pred EccCCCce
Confidence 99988765
No 355
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.46 E-value=0.0089 Score=53.95 Aligned_cols=111 Identities=12% Similarity=0.198 Sum_probs=73.0
Q ss_pred eEEEEEccCCC-------EEEEEeCCCcEEEEecCCCeE--EEEee---cccccceEEEEEeecCCcEEEEEcCCCcEEE
Q 041325 213 VSALALSSDGS-------LLYSTSWDRTFKIWRTSDFRC--LESVK---NAHDDAINAIVVSKSNDGFVYTGSADTKIKV 280 (450)
Q Consensus 213 v~~~~~~~~~~-------~l~~~~~dg~i~iwd~~~~~~--~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v 280 (450)
|+-+.+.|+.+ .-+.|-.|..|.-||.+-... +...+ -.....-.|.+-. .++++++|+.+|.||+
T Consensus 378 i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT--~sG~IvvgS~~GdIRL 455 (644)
T KOG2395|consen 378 INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT--ESGYIVVGSLKGDIRL 455 (644)
T ss_pred cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeeec--CCceEEEeecCCcEEe
Confidence 55555555432 123466788899999873221 11111 0122334555544 7889999999999999
Q ss_pred EeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcC
Q 041325 281 WKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERD 334 (450)
Q Consensus 281 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~ 334 (450)
||-.... ....+.+...+|..+..+.+|++|++.+ +..+.+.++.
T Consensus 456 Ydri~~~--------AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 456 YDRIGRR--------AKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ehhhhhh--------hhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 9962222 4445677888999999999999988665 5667777764
No 356
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.44 E-value=0.045 Score=52.53 Aligned_cols=230 Identities=14% Similarity=0.224 Sum_probs=125.5
Q ss_pred eCCEEEEeeCCC------cEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCC-C-----eEE
Q 041325 84 AGKLLYGGSSNG------EIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQD-H-----KIR 150 (450)
Q Consensus 84 d~~~l~tgs~dg------~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~d-g-----~i~ 150 (450)
.+.+++.|+.++ .+..+|..+++....... .....-.+++..++. .++||.| | ++.
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m-----------~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve 352 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPM-----------PSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVE 352 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCC-----------CcccccccEEEECCEEEEEccccCCCcccceEE
Confidence 466667777763 577888887754443221 122334566666666 7788888 2 355
Q ss_pred EEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeC
Q 041325 151 VWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSW 230 (450)
Q Consensus 151 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 230 (450)
.||....+= ..+..+... .+.-.+. .-+|.+.++|+.
T Consensus 353 ~YD~~~~~W--------------~~~a~M~~~-------------------------R~~~~v~----~l~g~iYavGG~ 389 (571)
T KOG4441|consen 353 RYDPRTNQW--------------TPVAPMNTK-------------------------RSDFGVA----VLDGKLYAVGGF 389 (571)
T ss_pred EecCCCCce--------------eccCCccCc-------------------------cccceeE----EECCEEEEEecc
Confidence 666665520 111111100 0111111 125778888888
Q ss_pred CCc-----EEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCC------cEEEEeCcchhhhccccchhhhh
Q 041325 231 DRT-----FKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADT------KIKVWKKLRAALQVNKKHSLVQT 299 (450)
Q Consensus 231 dg~-----i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~~~~~~~ 299 (450)
||. +..||..+.+--..- .............-++.+.++|+.++ .+..||..++.+ ..+..
T Consensus 390 dg~~~l~svE~YDp~~~~W~~va--~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W------~~~~~ 461 (571)
T KOG4441|consen 390 DGEKSLNSVECYDPVTNKWTPVA--PMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW------TLIAP 461 (571)
T ss_pred ccccccccEEEecCCCCcccccC--CCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce------eecCC
Confidence 864 667777664422111 11122233333332566777777554 567888877653 23333
Q ss_pred HhhcccceEEEEEcCCCCEEEEeeCCCc-----EEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEE
Q 041325 300 LEKHKSAVTALALSTDGTVLYSGACDRS-----ILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFS 374 (450)
Q Consensus 300 ~~~~~~~i~~l~~~~~~~~l~~g~~dg~-----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s 374 (450)
+...........+ ++.+.+.|+.|+. |..||..+.+.. ....+......+-.....+...+.
T Consensus 462 M~~~R~~~g~a~~--~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~-----------~v~~m~~~rs~~g~~~~~~~ly~v 528 (571)
T KOG4441|consen 462 MNTRRSGFGVAVL--NGKIYVVGGFDGTSALSSVERYDPETNQWT-----------MVAPMTSPRSAVGVVVLGGKLYAV 528 (571)
T ss_pred cccccccceEEEE--CCEEEEECCccCCCccceEEEEcCCCCcee-----------EcccCccccccccEEEECCEEEEE
Confidence 3332333332333 6788888887763 677888776543 333344444555555666778888
Q ss_pred EeCCC-----eEEEeeCCC
Q 041325 375 GSSDN-----TIRIWRRSS 388 (450)
Q Consensus 375 ~~~dg-----~v~iwd~~~ 388 (450)
|+.|| +|..||..+
T Consensus 529 GG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 529 GGFDGNNNLNTVECYDPET 547 (571)
T ss_pred ecccCccccceeEEcCCCC
Confidence 88776 366676664
No 357
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.42 E-value=0.00022 Score=67.31 Aligned_cols=111 Identities=17% Similarity=0.150 Sum_probs=86.1
Q ss_pred ceEEEEEccCCCEEEEEe----CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchh
Q 041325 212 TVSALALSSDGSLLYSTS----WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAA 287 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 287 (450)
.-+-..|+|...++++++ ..|.|.||- ++|++...+. .+-.+.+++|+| ..-.|+.|-.-|.+.+|...+.+
T Consensus 17 vsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt--~P~hatSLCWHp-e~~vLa~gwe~g~~~v~~~~~~e 92 (1416)
T KOG3617|consen 17 VSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT--YPVHATSLCWHP-EEFVLAQGWEMGVSDVQKTNTTE 92 (1416)
T ss_pred cccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc--cceehhhhccCh-HHHHHhhccccceeEEEecCCce
Confidence 344567999999988876 467888874 4566555443 344567899998 44468888889999999976655
Q ss_pred hhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcC
Q 041325 288 LQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERD 334 (450)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~ 334 (450)
.......|..+|..+.|+++|..++++..-|.|.+|...
T Consensus 93 --------~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 93 --------THTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred --------eeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence 334445689999999999999999999999999999876
No 358
>PHA02713 hypothetical protein; Provisional
Probab=97.41 E-value=0.0092 Score=57.20 Aligned_cols=187 Identities=7% Similarity=0.116 Sum_probs=95.1
Q ss_pred CCCEEEEEeCC------CcEEEEecCCCeEEEEeec-ccccceEEEEEeecCCcEEEEEcCCC-----cEEEEeCcchhh
Q 041325 221 DGSLLYSTSWD------RTFKIWRTSDFRCLESVKN-AHDDAINAIVVSKSNDGFVYTGSADT-----KIKVWKKLRAAL 288 (450)
Q Consensus 221 ~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~ 288 (450)
++.+.+.|+.+ ..+..||..+.+-. .+.. .....-.+++.. ++.+.+.|+.++ .+..||..+.+.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W 379 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLAVI--DDTIYAIGGQNGTNVERTIECYTMGDDKW 379 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEEEE--CCEEEEECCcCCCCCCceEEEEECCCCeE
Confidence 56667777743 34778888766422 1110 111111233333 565777787654 477899876542
Q ss_pred hccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCC-----------------------cEEEEEcCCCceeeeCCCC
Q 041325 289 QVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDR-----------------------SILVWERDQGNYIVDGDDD 345 (450)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg-----------------------~i~vwd~~~~~~~~~~~~~ 345 (450)
. .+..+.........+.+ +|++.+.|+.++ .+..||..+.+..
T Consensus 380 ~------~~~~mp~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~------ 445 (557)
T PHA02713 380 K------MLPDMPIALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWE------ 445 (557)
T ss_pred E------ECCCCCcccccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEe------
Confidence 2 22222222222222333 677777777653 3666777665432
Q ss_pred CCceeeeccccCCccceEEEEEeCCeEEEEeCC------CeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecC
Q 041325 346 SGHMVLKGALRGHTKAILCLAVVSNLLFSGSSD------NTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDS 419 (450)
Q Consensus 346 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 419 (450)
....+.............+...+.|+.+ ..+..||..+ ...|..+..+.........+.+ ++
T Consensus 446 -----~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~-----~~~W~~~~~m~~~r~~~~~~~~--~~ 513 (557)
T PHA02713 446 -----TLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNT-----YNGWELITTTESRLSALHTILH--DN 513 (557)
T ss_pred -----ecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCC-----CCCeeEccccCcccccceeEEE--CC
Confidence 1122211111222334456666666654 2467788774 0246655555443333333332 44
Q ss_pred CCCCCCCCCCCceEEEEEcccCC--cEEEEEe
Q 041325 420 DYSNRNSDHSSTSFLVYSGSLDC--EIKIWQI 449 (450)
Q Consensus 420 ~~~~~~~~~~~~~~~l~s~~~Dg--~i~iw~l 449 (450)
. +.+.||.|| .+..||.
T Consensus 514 ~-------------iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 514 T-------------IMMLHCYESYMLQDTFNV 532 (557)
T ss_pred E-------------EEEEeeecceeehhhcCc
Confidence 4 888999888 5555554
No 359
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=97.40 E-value=0.16 Score=49.91 Aligned_cols=324 Identities=15% Similarity=0.110 Sum_probs=158.9
Q ss_pred CcceEEEEE----e----CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC--eEEEEe
Q 041325 75 SSYIPSLAI----A----GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD--KLFSAH 144 (450)
Q Consensus 75 ~~~v~~~~~----d----~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~l~s~~ 144 (450)
...|.|+.+ | .++++.|..+..+.+--.............. ...-...|.-..+-.+ .|.++.
T Consensus 530 e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~-------~~~iPRSIl~~~~e~d~~yLlval 602 (1096)
T KOG1897|consen 530 EYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLS-------GEIIPRSILLTTFEGDIHYLLVAL 602 (1096)
T ss_pred cceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccC-------CCccchheeeEEeeccceEEEEEc
Confidence 457888877 2 2378888887766655433222222211000 0011124444455443 399999
Q ss_pred CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecC-CCceEE-EEEcc--
Q 041325 145 QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHH-VDTVSA-LALSS-- 220 (450)
Q Consensus 145 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~-~~~~~-- 220 (450)
.||.+.-+.++..+...........+.....+.++.........+......+.........+..- -..+.. +.|+.
T Consensus 603 gdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a 682 (1096)
T KOG1897|consen 603 GDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDA 682 (1096)
T ss_pred CCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhccccccc
Confidence 99999888777665433332222222222334444433333333333333332222221111110 001111 12222
Q ss_pred CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcC-----------C---CcEEEEeCcch
Q 041325 221 DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSA-----------D---TKIKVWKKLRA 286 (450)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-----------d---g~i~vwd~~~~ 286 (450)
-+..++++. .+.+++--+..-+.+..-.-........+++.+ ....+.+.+. . ..++++|-.+-
T Consensus 683 ~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf 760 (1096)
T KOG1897|consen 683 YPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTF 760 (1096)
T ss_pred CCceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCce
Confidence 233455544 566777666544333222223445566666664 2223333221 1 13555554332
Q ss_pred hhhccccchhhhhHhhc--ccceEEEEEcCC-CCEEEEeeC----------CCcEEEEEcCCCceeeeCCCCCCceeeec
Q 041325 287 ALQVNKKHSLVQTLEKH--KSAVTALALSTD-GTVLYSGAC----------DRSILVWERDQGNYIVDGDDDSGHMVLKG 353 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~--~~~i~~l~~~~~-~~~l~~g~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 353 (450)
+. .....+... -..|.++.|..| +.++++|+. .|.|.+|.+...+.+ ....
T Consensus 761 ~v------l~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L----------~~v~ 824 (1096)
T KOG1897|consen 761 EV------LSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL----------ELVA 824 (1096)
T ss_pred eE------EeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce----------eeee
Confidence 20 011111111 123455568777 677888763 477888877763222 1111
Q ss_pred cccCCccceEEEE-EeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCce
Q 041325 354 ALRGHTKAILCLA-VVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTS 432 (450)
Q Consensus 354 ~~~~~~~~v~~~~-~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~ 432 (450)
... -.+.+.++. |++.++|. -...|++|+..+. +.++.-..|..++..+...-.+.
T Consensus 825 e~~-v~Gav~aL~~fngkllA~--In~~vrLye~t~~--------~eLr~e~~~~~~~~aL~l~v~gd------------ 881 (1096)
T KOG1897|consen 825 ETV-VKGAVYALVEFNGKLLAG--INQSVRLYEWTTE--------RELRIECNISNPIIALDLQVKGD------------ 881 (1096)
T ss_pred eee-eccceeehhhhCCeEEEe--cCcEEEEEEcccc--------ceehhhhcccCCeEEEEEEecCc------------
Confidence 111 124444444 44556554 4567999998863 45555567788888888888888
Q ss_pred EEEEEcccCCcEEEE
Q 041325 433 FLVYSGSLDCEIKIW 447 (450)
Q Consensus 433 ~~l~s~~~Dg~i~iw 447 (450)
.++.|.--+.|.+-
T Consensus 882 -eI~VgDlm~Sitll 895 (1096)
T KOG1897|consen 882 -EIAVGDLMRSITLL 895 (1096)
T ss_pred -EEEEeeccceEEEE
Confidence 78888776666553
No 360
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.31 E-value=0.081 Score=48.80 Aligned_cols=224 Identities=13% Similarity=0.112 Sum_probs=105.5
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeE
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKI 149 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i 149 (450)
........+++ +|++++.+ .||.-.|+......... .+.-...+|.++. +++-...++|
T Consensus 30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----------------~G~g~~~vw~~~n~yAv~~~~~~I 91 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----------------FGSGLSFVWSSRNRYAVLESSSTI 91 (443)
T ss_dssp E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----------------EEE-SEEEE-TSSEEEEE-TTS-E
T ss_pred CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----------------cCceeEEEEecCccEEEEECCCeE
Confidence 44556778888 68888885 56888888733322111 1344567777644 8877778889
Q ss_pred EEE-EcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE
Q 041325 150 RVW-KIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST 228 (450)
Q Consensus 150 ~iw-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 228 (450)
.++ +++.... ..+. ....+..+-. |.+|...
T Consensus 92 ~I~kn~~~~~~-----------------k~i~----------------------------~~~~~~~If~---G~LL~~~ 123 (443)
T PF04053_consen 92 KIYKNFKNEVV-----------------KSIK----------------------------LPFSVEKIFG---GNLLGVK 123 (443)
T ss_dssp EEEETTEE-TT--------------------------------------------------SS-EEEEE----SSSEEEE
T ss_pred EEEEcCccccc-----------------eEEc----------------------------CCcccceEEc---CcEEEEE
Confidence 996 3432210 0000 0112333322 7777777
Q ss_pred eCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc--cccch-hhhhHhhccc
Q 041325 229 SWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV--NKKHS-LVQTLEKHKS 305 (450)
Q Consensus 229 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~--~~~~~-~~~~~~~~~~ 305 (450)
+. +.|.+||..+++.+..+. . .+|..+.|+++++ +++..+. ..+.+++........ ..... ..........
T Consensus 124 ~~-~~i~~yDw~~~~~i~~i~--v-~~vk~V~Ws~~g~-~val~t~-~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~ 197 (443)
T PF04053_consen 124 SS-DFICFYDWETGKLIRRID--V-SAVKYVIWSDDGE-LVALVTK-DSIYILKYNLEAVAAIPEEGVEDAFELIHEISE 197 (443)
T ss_dssp ET-TEEEEE-TTT--EEEEES--S--E-EEEEE-TTSS-EEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S
T ss_pred CC-CCEEEEEhhHcceeeEEe--c-CCCcEEEEECCCC-EEEEEeC-CeEEEEEecchhcccccccCchhceEEEEEecc
Confidence 64 489999999999999986 2 2489999997544 6665554 468887754331000 00000 1111111245
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEE
Q 041325 306 AVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRI 383 (450)
Q Consensus 306 ~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~i 383 (450)
.|.+.+|..+ .++-.+.. +|+. +..|+.. .+..-..++.=+.+.+ +.+.....|+.|..
T Consensus 198 ~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~--------------~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~ 258 (443)
T PF04053_consen 198 RIKSGCWVED--CFIYTTSN-HLKY--LVNGETG--------------IIAHLDKPLYLLGYLPKENRLYLIDRDGNVIS 258 (443)
T ss_dssp --SEEEEETT--EEEEE-TT-EEEE--EETTEEE--------------EEEE-SS--EEEEEETTTTEEEEE-TT--EEE
T ss_pred eeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcc--------------eEEEcCCceEEEEEEccCCEEEEEECCCCEEE
Confidence 6777777644 33333333 5554 3333321 1111123444455555 67777777777777
Q ss_pred eeCC
Q 041325 384 WRRS 387 (450)
Q Consensus 384 wd~~ 387 (450)
+.+.
T Consensus 259 ~~ld 262 (443)
T PF04053_consen 259 YELD 262 (443)
T ss_dssp EE--
T ss_pred EEEC
Confidence 7655
No 361
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.29 E-value=0.0088 Score=58.30 Aligned_cols=128 Identities=17% Similarity=0.284 Sum_probs=83.7
Q ss_pred EEEE-EcCCCcEEEEeCcchhhhccccchhhhhHhhcccc-eEEEEEcC-----CCCEEEEeeCCCcEEEEEcCCCc-ee
Q 041325 268 FVYT-GSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSA-VTALALST-----DGTVLYSGACDRSILVWERDQGN-YI 339 (450)
Q Consensus 268 ~l~~-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-i~~l~~~~-----~~~~l~~g~~dg~i~vwd~~~~~-~~ 339 (450)
+|+. ......|+-.|+..++ .+..+..+... |..++-.. ....-+.|-.+..|..||.+-.. .+
T Consensus 495 mil~~~~~~~~ly~mDLe~GK--------VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~ 566 (794)
T PF08553_consen 495 MILLDPNNPNKLYKMDLERGK--------VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKL 566 (794)
T ss_pred eEeecCCCCCceEEEecCCCc--------EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCce
Confidence 4333 3456788999998887 66666655543 44443221 12345667788999999998532 11
Q ss_pred eeCCCCCCceeeeccccCCccceEEEEEeCC-eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEec
Q 041325 340 VDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVD 418 (450)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 418 (450)
... .... -.......|++-.++ +||.|+.+|.||+||--. ......+.+-..+|.+|..+.|
T Consensus 567 v~~--------~~k~-Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g--------~~AKT~lp~lG~pI~~iDvt~D 629 (794)
T PF08553_consen 567 VDS--------QSKQ-YSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLG--------KRAKTALPGLGDPIIGIDVTAD 629 (794)
T ss_pred eec--------cccc-cccCCCceEEEecCCceEEEEeCCCcEEeecccc--------hhhhhcCCCCCCCeeEEEecCC
Confidence 100 0011 123345678887765 999999999999999432 2345556677899999999999
Q ss_pred CC
Q 041325 419 SD 420 (450)
Q Consensus 419 ~~ 420 (450)
|+
T Consensus 630 Gk 631 (794)
T PF08553_consen 630 GK 631 (794)
T ss_pred Cc
Confidence 99
No 362
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.29 E-value=0.1 Score=45.39 Aligned_cols=265 Identities=15% Similarity=0.197 Sum_probs=130.0
Q ss_pred CcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEE----------EeCCCeEEEEEcCCCceeEE
Q 041325 95 GEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFS----------AHQDHKIRVWKIDNNTSAYY 162 (450)
Q Consensus 95 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s----------~~~dg~i~iw~~~~~~~~~~ 162 (450)
+.+.|.|.++++.+-.... +. .-.+..++++ +++ |-....|.+||..+......
T Consensus 17 ~rv~viD~d~~k~lGmi~~-----------g~---~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~E 82 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT-----------GF---LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGE 82 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE-----------ES---SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEE
T ss_pred ceEEEEECCCCcEEEEeec-----------cc---CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccce
Confidence 4788888888775543211 11 1223344444 332 33445699999999866443
Q ss_pred eccCc---ccccceeeeeeccCCCcceeE--eeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEEEEEeCCCcEEE
Q 041325 163 STSGK---LKNKYYERIATLPTLNDRFTK--CFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLYSTSWDRTFKI 236 (450)
Q Consensus 163 ~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~i 236 (450)
..... ...........+.. ++++.. -+.+...+.+-+.....+...-..--|.-.-| ..+-|.+-|.||.+.-
T Consensus 83 I~iP~k~R~~~~~~~~~~~ls~-dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~ 161 (342)
T PF06433_consen 83 IEIPPKPRAQVVPYKNMFALSA-DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLT 161 (342)
T ss_dssp EEETTS-B--BS--GGGEEE-T-TSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEE
T ss_pred EecCCcchheecccccceEEcc-CCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEE
Confidence 32221 11112222223322 222222 23344444443333222221111111222223 2345888888999998
Q ss_pred EecC-CCeEEEEee---cccccceE-EEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhh----cccce
Q 041325 237 WRTS-DFRCLESVK---NAHDDAIN-AIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEK----HKSAV 307 (450)
Q Consensus 237 wd~~-~~~~~~~~~---~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~----~~~~i 307 (450)
..+. .|+...... .....++. .-++.. ..+.++--+.+|.|+--|+..........+.....-.. ..+.-
T Consensus 162 v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~-~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~ 240 (342)
T PF06433_consen 162 VTLDADGKEAQKSTKVFDPDDDPLFEHPAYSR-DGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGW 240 (342)
T ss_dssp EEETSTSSEEEEEEEESSTTTS-B-S--EEET-TTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SS
T ss_pred EEECCCCCEeEeeccccCCCCcccccccceEC-CCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcce
Confidence 8887 455432221 11222222 222332 33345557788988888876655333333333221111 12344
Q ss_pred EEEEEcCCCCEEEEeeC--------C--CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC---eEEE
Q 041325 308 TALALSTDGTVLYSGAC--------D--RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN---LLFS 374 (450)
Q Consensus 308 ~~l~~~~~~~~l~~g~~--------d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s 374 (450)
.-+++++..+.|++--. | ..|-++|+.+++.+. .+.. ..++.+|..+.+ +|++
T Consensus 241 Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~-------------Ri~l-~~~~~Si~Vsqd~~P~L~~ 306 (342)
T PF06433_consen 241 QLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVA-------------RIPL-EHPIDSIAVSQDDKPLLYA 306 (342)
T ss_dssp S-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEE-------------EEEE-EEEESEEEEESSSS-EEEE
T ss_pred eeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEE-------------EEeC-CCccceEEEccCCCcEEEE
Confidence 55788876666555322 1 147788888887662 2221 234667888733 5554
Q ss_pred -EeCCCeEEEeeCCCC
Q 041325 375 -GSSDNTIRIWRRSSS 389 (450)
Q Consensus 375 -~~~dg~v~iwd~~~~ 389 (450)
...++.+.+||..++
T Consensus 307 ~~~~~~~l~v~D~~tG 322 (342)
T PF06433_consen 307 LSAGDGTLDVYDAATG 322 (342)
T ss_dssp EETTTTEEEEEETTT-
T ss_pred EcCCCCeEEEEeCcCC
Confidence 456899999999986
No 363
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.24 E-value=0.2 Score=47.78 Aligned_cols=188 Identities=8% Similarity=0.069 Sum_probs=92.9
Q ss_pred EEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceE-EEEEeCCeEEEEe------CCCeEEEEE
Q 041325 81 LAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVK-SLVVLGDKLFSAH------QDHKIRVWK 153 (450)
Q Consensus 81 ~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~l~s~~------~dg~i~iw~ 153 (450)
+++.+..++.++.||.|...|..+++.+......... ....+. .-....+.++.+. .+|.|..+|
T Consensus 116 ~av~~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~--------~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD 187 (527)
T TIGR03075 116 VALYDGKVFFGTLDARLVALDAKTGKVVWSKKNGDYK--------AGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYD 187 (527)
T ss_pred ceEECCEEEEEcCCCEEEEEECCCCCEEeeccccccc--------ccccccCCcEEECCEEEEeecccccCCCcEEEEEE
Confidence 3455667778888999999999999977653321100 000111 1122345555554 268999999
Q ss_pred cCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceE-EEEEccCCCEEEEEeCC-
Q 041325 154 IDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVS-ALALSSDGSLLYSTSWD- 231 (450)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d- 231 (450)
.++++.................. ...... .. ...-+.. ..+..-...+. .+++.++..+++.+..+
T Consensus 188 ~~TG~~lW~~~~~p~~~~~~~~~-~~~~~~-~~--------~~~tw~~--~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp 255 (527)
T TIGR03075 188 AKTGKLVWRRYTVPGDMGYLDKA-DKPVGG-EP--------GAKTWPG--DAWKTGGGATWGTGSYDPETNLIYFGTGNP 255 (527)
T ss_pred CCCCceeEeccCcCCCccccccc-cccccc-cc--------ccCCCCC--CccccCCCCccCceeEcCCCCeEEEeCCCC
Confidence 99996644332211110000000 000000 00 0000000 00000111121 34555555555544311
Q ss_pred ---------------CcEEEEecCCCeEEEEeecccc--------cceEEEEEeecCC--cEEEEEcCCCcEEEEeCcch
Q 041325 232 ---------------RTFKIWRTSDFRCLESVKNAHD--------DAINAIVVSKSND--GFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 232 ---------------g~i~iwd~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~ 286 (450)
..|.-.|+++|+..-.++..+. ....-+....++. ..++.+..+|.+.+.|.+++
T Consensus 256 ~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG 335 (527)
T TIGR03075 256 SPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNG 335 (527)
T ss_pred CCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCC
Confidence 1567778899998887773221 1111122211222 36889999999999999988
Q ss_pred hh
Q 041325 287 AL 288 (450)
Q Consensus 287 ~~ 288 (450)
+.
T Consensus 336 ~~ 337 (527)
T TIGR03075 336 KL 337 (527)
T ss_pred ce
Confidence 74
No 364
>PHA02713 hypothetical protein; Provisional
Probab=97.23 E-value=0.076 Score=51.08 Aligned_cols=146 Identities=6% Similarity=0.056 Sum_probs=78.8
Q ss_pred CCCEEEEEeCCC-----cEEEEecCCCeEEE--EeecccccceEEEEEeecCCcEEEEEcCCC-----------------
Q 041325 221 DGSLLYSTSWDR-----TFKIWRTSDFRCLE--SVKNAHDDAINAIVVSKSNDGFVYTGSADT----------------- 276 (450)
Q Consensus 221 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----------------- 276 (450)
++++.+.||.++ .+..||..+.+=.. .+. ....-.+++.. ++.+.+.|+.++
T Consensus 351 ~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp--~~r~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 351 DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMP--IALSSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCC--cccccccEEEE--CCEEEEEeCCCcccccccccccccccccc
Confidence 567777777654 47889987653221 111 11111222222 455677776543
Q ss_pred ------cEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCC------cEEEEEcCC-CceeeeCC
Q 041325 277 ------KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDR------SILVWERDQ-GNYIVDGD 343 (450)
Q Consensus 277 ------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg------~i~vwd~~~-~~~~~~~~ 343 (450)
.+..||..+.+. ..+..+.........+.+ ++++.+.|+.++ .+..||..+ .+..
T Consensus 427 ~~~~~~~ve~YDP~td~W------~~v~~m~~~r~~~~~~~~--~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~---- 494 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIW------ETLPNFWTGTIRPGVVSH--KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWE---- 494 (557)
T ss_pred cccccceEEEECCCCCeE------eecCCCCcccccCcEEEE--CCEEEEEeCCCCCCccceeEEEecCCCCCCee----
Confidence 467788776552 222222211122122222 567777776542 356788776 4422
Q ss_pred CCCCceeeeccccCCccceEEEEEeCCeEEEEeCCC--eEEEeeCCCC
Q 041325 344 DDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDN--TIRIWRRSSS 389 (450)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg--~v~iwd~~~~ 389 (450)
....+.............+...++|+.|| .+..||..+.
T Consensus 495 -------~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~~~~ 535 (557)
T PHA02713 495 -------LITTTESRLSALHTILHDNTIMMLHCYESYMLQDTFNVYTY 535 (557)
T ss_pred -------EccccCcccccceeEEECCEEEEEeeecceeehhhcCcccc
Confidence 22334333344455556677888999888 6778888754
No 365
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.22 E-value=0.14 Score=45.50 Aligned_cols=99 Identities=12% Similarity=0.111 Sum_probs=49.8
Q ss_pred CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcC---CC-cEEEEeCcchhhhccccchhhhhHhhcccce
Q 041325 232 RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSA---DT-KIKVWKKLRAALQVNKKHSLVQTLEKHKSAV 307 (450)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i 307 (450)
..|.-.|+.+|+....+. ....+..+.++|.++.+|+-|.. +. .-|||-+++.. ....++.... ....+
T Consensus 168 ~~i~~idl~tG~~~~v~~--~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg----~~~~~v~~~~-~~e~~ 240 (386)
T PF14583_consen 168 CRIFTIDLKTGERKVVFE--DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG----SNVKKVHRRM-EGESV 240 (386)
T ss_dssp EEEEEEETTT--EEEEEE--ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS-------EESS----TTEEE
T ss_pred ceEEEEECCCCceeEEEe--cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC----CcceeeecCC-CCccc
Confidence 456667888887655554 56678899999988877766544 22 13667665433 1111222211 23344
Q ss_pred EEEEEcCCCCEEEEee-----CCCcEEEEEcCCCc
Q 041325 308 TALALSTDGTVLYSGA-----CDRSILVWERDQGN 337 (450)
Q Consensus 308 ~~l~~~~~~~~l~~g~-----~dg~i~vwd~~~~~ 337 (450)
..=-|.|||..|.--+ .+..|.-+|+.+++
T Consensus 241 gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~ 275 (386)
T PF14583_consen 241 GHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGE 275 (386)
T ss_dssp EEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--
T ss_pred ccccccCCCCEEEEEeecCCCCceEEEeeCCCCCC
Confidence 4456889988665422 23456667777654
No 366
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.19 E-value=0.11 Score=43.70 Aligned_cols=214 Identities=12% Similarity=0.160 Sum_probs=108.8
Q ss_pred eecCCCcceEEEEEe---CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEe-
Q 041325 70 KVKGNSSYIPSLAIA---GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAH- 144 (450)
Q Consensus 70 ~~~~h~~~v~~~~~d---~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~- 144 (450)
.+.+-...+..++|+ +.++++....+.|...+.+ ++.+.... +.+ .+..-.|++.++. ++...
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~----------l~g-~~D~EgI~y~g~~~~vl~~E 83 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIP----------LDG-FGDYEGITYLGNGRYVLSEE 83 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-----------SS--SSEEEEEE-STTEEEEEET
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEe----------CCC-CCCceeEEEECCCEEEEEEc
Confidence 344777779999993 4567777778888888865 55554422 223 3567888888666 44444
Q ss_pred CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCE
Q 041325 145 QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSL 224 (450)
Q Consensus 145 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 224 (450)
.++.+.+.++....... .. .....+. ......++..+-.++|++.++.
T Consensus 84 r~~~L~~~~~~~~~~~~-------~~---~~~~~~~----------------------l~~~~~~N~G~EGla~D~~~~~ 131 (248)
T PF06977_consen 84 RDQRLYIFTIDDDTTSL-------DR---ADVQKIS----------------------LGFPNKGNKGFEGLAYDPKTNR 131 (248)
T ss_dssp TTTEEEEEEE----TT---------E---EEEEEEE-------------------------S---SS--EEEEEETTTTE
T ss_pred CCCcEEEEEEecccccc-------ch---hhceEEe----------------------cccccCCCcceEEEEEcCCCCE
Confidence 48889999885432100 00 0000000 0000135567899999998887
Q ss_pred EEEEeCCCcEEEEecCC---CeEEEEee-------cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccc
Q 041325 225 LYSTSWDRTFKIWRTSD---FRCLESVK-------NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKH 294 (450)
Q Consensus 225 l~~~~~dg~i~iwd~~~---~~~~~~~~-------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 294 (450)
|+.+-...-..+|.+.. ...+.... ......+.++.++|..+.+++....+..|..+|. +++.. ...
T Consensus 132 L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~-~G~~~--~~~ 208 (248)
T PF06977_consen 132 LFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDR-QGRVV--SSL 208 (248)
T ss_dssp EEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-T-T--EE--EEE
T ss_pred EEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECC-CCCEE--EEE
Confidence 87787777777776653 21111111 1233467889999988878888888999999984 33310 111
Q ss_pred hhhhhHh---hcccceEEEEEcCCCCEEEEeeCCCcEEEE
Q 041325 295 SLVQTLE---KHKSAVTALALSTDGTVLYSGACDRSILVW 331 (450)
Q Consensus 295 ~~~~~~~---~~~~~i~~l~~~~~~~~l~~g~~dg~i~vw 331 (450)
.+..... ..-...-.|+|.++|++.++ ++-+..++|
T Consensus 209 ~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 209 SLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp E-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred EeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 1111111 11235678999999865554 455555544
No 367
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.17 E-value=0.17 Score=45.53 Aligned_cols=106 Identities=11% Similarity=0.199 Sum_probs=56.1
Q ss_pred CCcEEEEecCCCeEEEEeeccccc-ceEEEEEeecCCc-E-EEEEcCCCcEEEEeC-cchhhhccc-------------c
Q 041325 231 DRTFKIWRTSDFRCLESVKNAHDD-AINAIVVSKSNDG-F-VYTGSADTKIKVWKK-LRAALQVNK-------------K 293 (450)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~-~-l~~~~~dg~i~vwd~-~~~~~~~~~-------------~ 293 (450)
..++.+||+.+.+.++.+..+..+ ....|.|..+... . ++.+.-..+|..|-- +.++..... -
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 468999999999999999855444 4667888754432 2 444444455554432 333211100 0
Q ss_pred chhhhhHhhcccceEEEEEcCCCCEEEEee-CCCcEEEEEcCCC
Q 041325 294 HSLVQTLEKHKSAVTALALSTDGTVLYSGA-CDRSILVWERDQG 336 (450)
Q Consensus 294 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~-~dg~i~vwd~~~~ 336 (450)
...++.+..-..-|+.|..|.|.++|...+ .+|.|+.||+...
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP 344 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDP 344 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SST
T ss_pred cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCC
Confidence 122333444456789999999999987766 5899999999864
No 368
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.16 E-value=0.081 Score=50.82 Aligned_cols=181 Identities=13% Similarity=0.226 Sum_probs=98.3
Q ss_pred CCCEEEEEeCC------CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCc-----EEEEeCcchhhh
Q 041325 221 DGSLLYSTSWD------RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTK-----IKVWKKLRAALQ 289 (450)
Q Consensus 221 ~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-----i~vwd~~~~~~~ 289 (450)
++.+.++|+.| ..+..||..+.+=...-.-.....-..++.. ++.+.++|+.||. +-.||..+.+
T Consensus 332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~-- 407 (571)
T KOG4441|consen 332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNK-- 407 (571)
T ss_pred CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEEE--CCEEEEEeccccccccccEEEecCCCCc--
Confidence 45778888888 3567788877652221110111112223333 5667889998874 6678876654
Q ss_pred ccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCC------cEEEEEcCCCceeeeCCCCCCceeeeccccCCccceE
Q 041325 290 VNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDR------SILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAIL 363 (450)
Q Consensus 290 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 363 (450)
+..+..+.........+.+ +|.+.++|+.++ ++..||..+++.. ....+..-.....
T Consensus 408 ----W~~va~m~~~r~~~gv~~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~-----------~~~~M~~~R~~~g 470 (571)
T KOG4441|consen 408 ----WTPVAPMLTRRSGHGVAVL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWT-----------LIAPMNTRRSGFG 470 (571)
T ss_pred ----ccccCCCCcceeeeEEEEE--CCEEEEEcCcCCCccccceEEEEcCCCCcee-----------ecCCcccccccce
Confidence 2233333322233333333 688888888654 4677888776543 2222222222223
Q ss_pred EEEEeCCeEEEEeCCCe-----EEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEc
Q 041325 364 CLAVVSNLLFSGSSDNT-----IRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSG 438 (450)
Q Consensus 364 ~~~~~~~~l~s~~~dg~-----v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~ 438 (450)
....++.+.+.|+.|+. |..||..+. .+..+..+......+..+.+ ++. +.+.|
T Consensus 471 ~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~------~W~~v~~m~~~rs~~g~~~~--~~~-------------ly~vG 529 (571)
T KOG4441|consen 471 VAVLNGKIYVVGGFDGTSALSSVERYDPETN------QWTMVAPMTSPRSAVGVVVL--GGK-------------LYAVG 529 (571)
T ss_pred EEEECCEEEEECCccCCCccceEEEEcCCCC------ceeEcccCccccccccEEEE--CCE-------------EEEEe
Confidence 44455667788887763 677887753 34555444333333222222 233 78888
Q ss_pred ccCCc
Q 041325 439 SLDCE 443 (450)
Q Consensus 439 ~~Dg~ 443 (450)
+.||.
T Consensus 530 G~~~~ 534 (571)
T KOG4441|consen 530 GFDGN 534 (571)
T ss_pred cccCc
Confidence 88875
No 369
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.16 E-value=0.034 Score=52.46 Aligned_cols=112 Identities=13% Similarity=0.078 Sum_probs=78.2
Q ss_pred ccCCCEEEEEeCCCcEEEEecCC-----CeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc
Q 041325 219 SSDGSLLYSTSWDRTFKIWRTSD-----FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 219 ~~~~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 293 (450)
.++|++... .++.|.+.|..+ .+.+..+. -......+.++|++..+++++..++.|.++|+.+.+......
T Consensus 285 vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~yIP--VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~ 360 (635)
T PRK02888 285 VKAGKFKTI--GGSKVPVVDGRKAANAGSALTRYVP--VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGK 360 (635)
T ss_pred hhCCCEEEE--CCCEEEEEECCccccCCcceEEEEE--CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence 346776665 367899999998 45555554 567789999999888778888889999999997754211111
Q ss_pred c----hhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCC
Q 041325 294 H----SLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQ 335 (450)
Q Consensus 294 ~----~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~ 335 (450)
. ....+..- .......+|.++|+...+-.-|..|..|++..
T Consensus 361 ~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 361 IKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 0 01111111 22335678999999888888999999999876
No 370
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.034 Score=54.77 Aligned_cols=72 Identities=19% Similarity=0.408 Sum_probs=53.7
Q ss_pred CCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEee-c-CCcEEEEEcCCCcEEEEeC
Q 041325 209 HVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSK-S-NDGFVYTGSADTKIKVWKK 283 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~-~~~~l~~~~~dg~i~vwd~ 283 (450)
-.++|++++|+.+|..++.|-.+|.|.+||+..++.++.+. .+..+...+-+.- . +...++++...|. +|.+
T Consensus 129 v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~-e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 129 VQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVIT-EHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeee-ecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 45689999999999999999999999999999988888877 4555544443321 1 2225777777776 5654
No 371
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.02 E-value=0.34 Score=46.30 Aligned_cols=76 Identities=9% Similarity=0.102 Sum_probs=48.3
Q ss_pred eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCcee
Q 041325 84 AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSA 160 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~ 160 (450)
.+..++.++.++.|+-.|..+++.+............. ...+...-..+++..+.++.++.|+.|...|.++++..
T Consensus 68 ~~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~-~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 68 VDGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIP-VMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGKVV 143 (527)
T ss_pred ECCEEEEECCCCcEEEEECCCCceeeEecCCCCccccc-ccccccccccceEECCEEEEEcCCCEEEEEECCCCCEE
Confidence 46677778888999999999998777644322110000 00000001224556677888999999999999998543
No 372
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.97 E-value=0.0031 Score=37.03 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=29.4
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCc
Q 041325 304 KSAVTALALSTDGTVLYSGACDRSILVWERDQGN 337 (450)
Q Consensus 304 ~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~ 337 (450)
...|..++|+|..++||.|+.+|.|.+|.+ +++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence 456999999999999999999999999998 444
No 373
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.93 E-value=0.034 Score=50.40 Aligned_cols=128 Identities=16% Similarity=0.255 Sum_probs=84.1
Q ss_pred EEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCC-------EEEEeeCCCcEEEEEcCCCce-e
Q 041325 268 FVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGT-------VLYSGACDRSILVWERDQGNY-I 339 (450)
Q Consensus 268 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-------~l~~g~~dg~i~vwd~~~~~~-~ 339 (450)
++..+.....++-.|++.++ .+..+..+.. |+-+.+.|+.+ .-+.|-.|..|.-||.+-... .
T Consensus 348 il~~~~~~~~l~klDIE~GK--------IVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~k 418 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGK--------IVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNK 418 (644)
T ss_pred EeeCCCCcCcceeeecccce--------eeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcce
Confidence 45566666778888998887 6666665544 77777777543 223466788899999883211 1
Q ss_pred eeCCCCCCceeeeccccCCccceEEEEEeCC-eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEec
Q 041325 340 VDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVD 418 (450)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 418 (450)
+. ......+. ....-.|++-.++ +|+.||.+|-||+||.- + ......+.+-..+|..|..+.+
T Consensus 419 l~-------~~q~kqy~-~k~nFsc~aTT~sG~IvvgS~~GdIRLYdri-~-------~~AKTAlPgLG~~I~hVdvtad 482 (644)
T KOG2395|consen 419 LA-------VVQSKQYS-TKNNFSCFATTESGYIVVGSLKGDIRLYDRI-G-------RRAKTALPGLGDAIKHVDVTAD 482 (644)
T ss_pred ee-------eeeccccc-cccccceeeecCCceEEEeecCCcEEeehhh-h-------hhhhhcccccCCceeeEEeecc
Confidence 00 00001111 1233456665554 99999999999999973 2 2445567788899999999999
Q ss_pred CC
Q 041325 419 SD 420 (450)
Q Consensus 419 ~~ 420 (450)
|+
T Consensus 483 GK 484 (644)
T KOG2395|consen 483 GK 484 (644)
T ss_pred Cc
Confidence 99
No 374
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.84 E-value=0.19 Score=40.74 Aligned_cols=140 Identities=14% Similarity=0.173 Sum_probs=83.4
Q ss_pred ceEEEEEccCCCEEEEEeCC---------CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEe
Q 041325 212 TVSALALSSDGSLLYSTSWD---------RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWK 282 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd 282 (450)
+.+.-..+|+|++++-.-.| |.++.|-.. ..+..+. ..-.--+.++|..+...+.++-+.+-.|.-||
T Consensus 110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~-~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~d 186 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIW-NCVGISNGLAWDSDAKKFYYIDSLNYEVDAYD 186 (310)
T ss_pred ccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeee-hhccCCccccccccCcEEEEEccCceEEeeee
Confidence 45666778899884422222 334444332 1122222 12233467888866666777888888887787
Q ss_pred --CcchhhhccccchhhhhHhh----cccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeecccc
Q 041325 283 --KLRAALQVNKKHSLVQTLEK----HKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALR 356 (450)
Q Consensus 283 --~~~~~~~~~~~~~~~~~~~~----~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 356 (450)
..++.....+ .+..++. ..-..-.++...+|++.++.-..++|...|..+|+.+ ..+.
T Consensus 187 yd~~tG~~snr~---~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L-------------~eik 250 (310)
T KOG4499|consen 187 YDCPTGDLSNRK---VIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKIL-------------LEIK 250 (310)
T ss_pred cCCCcccccCcc---eeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEE-------------EEEE
Confidence 4444421111 1111111 1112234556668899999989999999999999977 3444
Q ss_pred CCccceEEEEEeCC
Q 041325 357 GHTKAILCLAVVSN 370 (450)
Q Consensus 357 ~~~~~v~~~~~~~~ 370 (450)
-....|++++|.|.
T Consensus 251 lPt~qitsccFgGk 264 (310)
T KOG4499|consen 251 LPTPQITSCCFGGK 264 (310)
T ss_pred cCCCceEEEEecCC
Confidence 44778999999865
No 375
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.82 E-value=0.24 Score=41.60 Aligned_cols=115 Identities=15% Similarity=0.067 Sum_probs=77.0
Q ss_pred ceEEEEEccCCCEEEEEeCCC--cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhh
Q 041325 212 TVSALALSSDGSLLYSTSWDR--TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQ 289 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 289 (450)
-...+.|..++.++-+.+.-| .|+.+|+.+++..........---..++.. ++.+....-.++...+||..+-+
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~-- 121 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLK-- 121 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTE--
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccce--
Confidence 346788877888888877655 799999999998877664444455666666 66677777889999999986544
Q ss_pred ccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCcee
Q 041325 290 VNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYI 339 (450)
Q Consensus 290 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~ 339 (450)
.+..+. ....=+.++. |++.|+.......|+.+|..+.+..
T Consensus 122 ------~~~~~~-y~~EGWGLt~--dg~~Li~SDGS~~L~~~dP~~f~~~ 162 (264)
T PF05096_consen 122 ------KIGTFP-YPGEGWGLTS--DGKRLIMSDGSSRLYFLDPETFKEV 162 (264)
T ss_dssp ------EEEEEE--SSS--EEEE--CSSCEEEE-SSSEEEEE-TTT-SEE
T ss_pred ------EEEEEe-cCCcceEEEc--CCCEEEEECCccceEEECCcccceE
Confidence 333332 2244566773 6777887777888999998876543
No 376
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.81 E-value=0.0049 Score=36.22 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=30.2
Q ss_pred CCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeE
Q 041325 209 HVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRC 244 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 244 (450)
....|.+++|+|..+++|.+..+|.|.++.+ +++.
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 3457999999999999999999999999998 4443
No 377
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.80 E-value=0.0054 Score=60.03 Aligned_cols=95 Identities=17% Similarity=0.317 Sum_probs=66.9
Q ss_pred CcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCC
Q 041325 266 DGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDD 345 (450)
Q Consensus 266 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 345 (450)
...++.|+..|.+...|+...- .....-..-.++|++++|+.+|.+++.|-.+|.|.+||...++.+
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL-------~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l------ 165 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNL-------GPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKIL------ 165 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhccc-------chhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcce------
Confidence 4478999999999998875421 122222335689999999999999999999999999999987755
Q ss_pred CCceeeeccccCCccceEEEEEe----CC-eEEEEeCCCe
Q 041325 346 SGHMVLKGALRGHTKAILCLAVV----SN-LLFSGSSDNT 380 (450)
Q Consensus 346 ~~~~~~~~~~~~~~~~v~~~~~~----~~-~l~s~~~dg~ 380 (450)
+.+..|..+.+++-+. ++ .++++...|.
T Consensus 166 -------~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 166 -------KVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred -------eeeeecCCccceEEEEEEeCCCcEEEEccCCCc
Confidence 3344444444443332 33 5777777675
No 378
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.75 E-value=0.003 Score=50.51 Aligned_cols=107 Identities=11% Similarity=0.160 Sum_probs=61.8
Q ss_pred CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhH
Q 041325 221 DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTL 300 (450)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 300 (450)
-+..+++|+.+|.|.+|+.................|.++.-.-..+.+..+++.||.|+.|++.-.+ .+...
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k--------~~g~~ 140 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNK--------VLGYV 140 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCc--------eeeee
Confidence 3556889999999999998732221111112233444443332233488999999999999985544 33333
Q ss_pred hhcc-cceEEEEEcCCCCEEEEe--eCCCcEEEEEcCC
Q 041325 301 EKHK-SAVTALALSTDGTVLYSG--ACDRSILVWERDQ 335 (450)
Q Consensus 301 ~~~~-~~i~~l~~~~~~~~l~~g--~~dg~i~vwd~~~ 335 (450)
..|. ..+.....+..++.+... +.|..++.|++..
T Consensus 141 g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 141 GQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 3344 334444444445555555 5566666666553
No 379
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.70 E-value=0.31 Score=41.18 Aligned_cols=177 Identities=12% Similarity=0.071 Sum_probs=110.9
Q ss_pred cCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchh
Q 041325 208 HHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAA 287 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 287 (450)
+-...+.++.|+|+.+.|++......-.++=..+|+.+.++....-.....|.+.. ++.++++--.++.+.++.+....
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig-~n~fvi~dER~~~l~~~~vd~~t 161 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIG-GNQFVIVDERDRALYLFTVDADT 161 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEec-CCEEEEEehhcceEEEEEEcCCc
Confidence 34445999999999998888887777778777789999988755555667788874 33356666678888887765542
Q ss_pred hhcc--ccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEE
Q 041325 288 LQVN--KKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL 365 (450)
Q Consensus 288 ~~~~--~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 365 (450)
.... ...-.+......+.....++|.|..+.|+.+-+-.=+.||.+............... .....-.-..|.++
T Consensus 162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~---~~~~~~f~~DvSgl 238 (316)
T COG3204 162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDP---TADRDLFVLDVSGL 238 (316)
T ss_pred cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCc---ccccceEeeccccc
Confidence 1110 101122222333667889999999998988888777888877643211110000000 00000112346677
Q ss_pred EEe---CCeEEEEeCCCeEEEeeCCC
Q 041325 366 AVV---SNLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 366 ~~~---~~~l~s~~~dg~v~iwd~~~ 388 (450)
.|+ +.+|+-+.+++.+.-.|...
T Consensus 239 ~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 239 EFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred eecCCCCcEEEEecCCceEEEEecCC
Confidence 777 34777777888887777663
No 380
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.67 E-value=0.55 Score=43.62 Aligned_cols=118 Identities=18% Similarity=0.254 Sum_probs=71.3
Q ss_pred eEEEEEccCCCEEEEE-eCCC----cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC----------Cc
Q 041325 213 VSALALSSDGSLLYST-SWDR----TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD----------TK 277 (450)
Q Consensus 213 v~~~~~~~~~~~l~~~-~~dg----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----------g~ 277 (450)
+....++|++++++.+ +..| .|+++|+++++.+.... .......+.|.+++..++.+...+ ..
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i--~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI--ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE--EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcc--cccccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 4467899999988865 3333 59999999998765432 112223399998767666666443 23
Q ss_pred EEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC----CcEEEEEcCCC
Q 041325 278 IKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD----RSILVWERDQG 336 (450)
Q Consensus 278 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d----g~i~vwd~~~~ 336 (450)
|+.|.+.+.. ....++............+..++|+++|+..... ..+++.++..+
T Consensus 204 v~~~~~gt~~----~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 204 VYRHKLGTPQ----SEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp EEEEETTS-G----GG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred EEEEECCCCh----HhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 6777775544 1111222222222225678899999988764432 35777787754
No 381
>PHA03098 kelch-like protein; Provisional
Probab=96.66 E-value=0.2 Score=48.37 Aligned_cols=108 Identities=7% Similarity=0.122 Sum_probs=53.7
Q ss_pred CCCEEEEEeCCC------cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC-----CcEEEEeCcchhhh
Q 041325 221 DGSLLYSTSWDR------TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD-----TKIKVWKKLRAALQ 289 (450)
Q Consensus 221 ~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~ 289 (450)
++.+++.|+.++ .+..||..+.+-...-.......-.+++.. ++.+++.|+.+ ..+..||..+++..
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~ 371 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWR 371 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence 455666666432 567788877654221110111111223333 55577777765 34677887665432
Q ss_pred ccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC------CcEEEEEcCCCce
Q 041325 290 VNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD------RSILVWERDQGNY 338 (450)
Q Consensus 290 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d------g~i~vwd~~~~~~ 338 (450)
....+.........+. -++++.+.|+.+ ..+..||..+.+.
T Consensus 372 ------~~~~lp~~r~~~~~~~--~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W 418 (534)
T PHA03098 372 ------EEPPLIFPRYNPCVVN--VNNLIYVIGGISKNDELLKTVECFSLNTNKW 418 (534)
T ss_pred ------eCCCcCcCCccceEEE--ECCEEEEECCcCCCCcccceEEEEeCCCCee
Confidence 1212211111112222 256777777632 3578888887653
No 382
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.56 E-value=0.17 Score=46.87 Aligned_cols=159 Identities=13% Similarity=0.092 Sum_probs=92.8
Q ss_pred cceEEEEE-eCCEEEEee---CCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe------EEEEeC
Q 041325 76 SYIPSLAI-AGKLLYGGS---SNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK------LFSAHQ 145 (450)
Q Consensus 76 ~~v~~~~~-d~~~l~tgs---~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~------l~s~~~ 145 (450)
-+|..++| ||+.++-.. .+|.+++=|.. ..|.-.-|..+.|.|-. |++.-.
T Consensus 20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfGds~-------------------viGqFEhV~GlsW~P~~~~~~paLLAVQH 80 (671)
T PF15390_consen 20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFGDSK-------------------VIGQFEHVHGLSWAPPCTADTPALLAVQH 80 (671)
T ss_pred ccccceEecCCCEEEEEeeeeeCCccccCCcc-------------------EeeccceeeeeeecCcccCCCCceEEEec
Confidence 47888999 887765432 23444332211 23455678999998643 778888
Q ss_pred CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEE
Q 041325 146 DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLL 225 (450)
Q Consensus 146 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 225 (450)
.+.|.+|.+....... .+ .-.-.+....+ ...---..+.|+|....|
T Consensus 81 kkhVtVWqL~~s~~e~----~K-----~l~sQtcEi~e------------------------~~pvLpQGCVWHPk~~iL 127 (671)
T PF15390_consen 81 KKHVTVWQLCPSTTER----NK-----LLMSQTCEIRE------------------------PFPVLPQGCVWHPKKAIL 127 (671)
T ss_pred cceEEEEEeccCcccc----cc-----ceeeeeeeccC------------------------CcccCCCcccccCCCceE
Confidence 8999999987432100 00 00000000000 000012456799988888
Q ss_pred EEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcch
Q 041325 226 YSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 226 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 286 (450)
+.-.....-.++++..............+.|.|.+|.+++..++++.+..=.-++||-...
T Consensus 128 ~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 128 TVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred EEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence 7766555555666654333222222477899999999977777666666667789985443
No 383
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.52 E-value=0.0013 Score=62.83 Aligned_cols=162 Identities=14% Similarity=0.148 Sum_probs=91.6
Q ss_pred ecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCC--CeEEEE----eecccccceEEEEEeecC--CcEEEEEcCCCc
Q 041325 207 VHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSD--FRCLES----VKNAHDDAINAIVVSKSN--DGFVYTGSADTK 277 (450)
Q Consensus 207 ~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~--~~~~~~----~~~~~~~~v~~~~~~~~~--~~~l~~~~~dg~ 277 (450)
++..+.|-.+.|-. +...+. -.-|.+.+||+.- |+.... ........+.-+.|.|-- .-++..+-.++.
T Consensus 129 kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~ 206 (1283)
T KOG1916|consen 129 KGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGE 206 (1283)
T ss_pred hcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCc
Confidence 35666777787743 222222 3346788888753 332222 222344555666666532 235777778899
Q ss_pred EEEEeCcchhhhccccchhhhhHhhcccceEEEE-----------EcCCCCEEEEeeCCCcEEEEEcC-CCceeeeCCCC
Q 041325 278 IKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALA-----------LSTDGTVLYSGACDRSILVWERD-QGNYIVDGDDD 345 (450)
Q Consensus 278 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~-----------~~~~~~~l~~g~~dg~i~vwd~~-~~~~~~~~~~~ 345 (450)
+++.+..+.. ...+..|...+..++ .+|||..++.++.||.++.|.+. +++..
T Consensus 207 i~lL~~~ra~---------~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~------ 271 (1283)
T KOG1916|consen 207 IRLLNINRAL---------RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIV------ 271 (1283)
T ss_pred eeEeeechHH---------HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeecccc------
Confidence 9988765543 233444555444333 68999999999999998888764 22211
Q ss_pred CCceeeeccccCCc-cceEEEEEeCC-----------eEEEEe-CCCeEEEeeCCC
Q 041325 346 SGHMVLKGALRGHT-KAILCLAVVSN-----------LLFSGS-SDNTIRIWRRSS 388 (450)
Q Consensus 346 ~~~~~~~~~~~~~~-~~v~~~~~~~~-----------~l~s~~-~dg~v~iwd~~~ 388 (450)
..+....+.|. .+-.|..++.+ ++++++ .+..+++|.-..
T Consensus 272 ---~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~ 324 (1283)
T KOG1916|consen 272 ---HRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAP 324 (1283)
T ss_pred ---HhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccc
Confidence 11223444454 33333333311 455554 456699998553
No 384
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.52 E-value=0.41 Score=40.28 Aligned_cols=199 Identities=14% Similarity=0.158 Sum_probs=108.9
Q ss_pred ceeeeEEeecCCCc--ceEEEEE-e-CCEEEEeeCCC--cEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe
Q 041325 63 HQCSATLKVKGNSS--YIPSLAI-A-GKLLYGGSSNG--EIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL 136 (450)
Q Consensus 63 ~~~~~~l~~~~h~~--~v~~~~~-d-~~~l~tgs~dg--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 136 (450)
.+.++++. |.. -...+.| + |.++-+.+.-| .|+.+|+.+++......... .----.++..
T Consensus 33 ~~vv~~yp---Hd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~-----------~~FgEGit~~ 98 (264)
T PF05096_consen 33 YEVVETYP---HDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPP-----------RYFGEGITIL 98 (264)
T ss_dssp EEEEEEEE-----TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TT-----------T--EEEEEEE
T ss_pred eEEEEECC---CCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCc-----------cccceeEEEE
Confidence 45566654 443 4557777 4 56666666656 79999999998765533221 1122344445
Q ss_pred CCeEE-EEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEE
Q 041325 137 GDKLF-SAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSA 215 (450)
Q Consensus 137 ~~~l~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 215 (450)
++.|+ -.-.++...+||.++. +.+..++ ..+.=..
T Consensus 99 ~d~l~qLTWk~~~~f~yd~~tl----------------~~~~~~~----------------------------y~~EGWG 134 (264)
T PF05096_consen 99 GDKLYQLTWKEGTGFVYDPNTL----------------KKIGTFP----------------------------YPGEGWG 134 (264)
T ss_dssp TTEEEEEESSSSEEEEEETTTT----------------EEEEEEE-----------------------------SSS--E
T ss_pred CCEEEEEEecCCeEEEEccccc----------------eEEEEEe----------------------------cCCcceE
Confidence 56633 3334788999999877 3333332 1123345
Q ss_pred EEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecc----cccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc
Q 041325 216 LALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNA----HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN 291 (450)
Q Consensus 216 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 291 (450)
++ .+++.|+.......|.++|..+.+....+.-. .-..++.+.+. ++.+.+-.-....|...|..+++....
T Consensus 135 Lt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~G~IyANVW~td~I~~Idp~tG~V~~~ 210 (264)
T PF05096_consen 135 LT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--NGKIYANVWQTDRIVRIDPETGKVVGW 210 (264)
T ss_dssp EE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--TTEEEEEETTSSEEEEEETTT-BEEEE
T ss_pred EE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--cCEEEEEeCCCCeEEEEeCCCCeEEEE
Confidence 55 45667777777889999999988777766521 12346667776 454555556666777777777663322
Q ss_pred ccchhhhh-Hh------hcccceEEEEEcCCCCEEEEee
Q 041325 292 KKHSLVQT-LE------KHKSAVTALALSTDGTVLYSGA 323 (450)
Q Consensus 292 ~~~~~~~~-~~------~~~~~i~~l~~~~~~~~l~~g~ 323 (450)
.....+.. .. ....-.+.||+.|..+.|+..+
T Consensus 211 iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 211 IDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 21111211 11 1135688999998666554443
No 385
>PHA03098 kelch-like protein; Provisional
Probab=96.50 E-value=0.64 Score=44.87 Aligned_cols=147 Identities=10% Similarity=0.099 Sum_probs=71.3
Q ss_pred CCCEEEEEeCC-----CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC------CcEEEEeCcchhhh
Q 041325 221 DGSLLYSTSWD-----RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD------TKIKVWKKLRAALQ 289 (450)
Q Consensus 221 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~ 289 (450)
++.+++.||.+ ..+..||..+.+-...-.......-.+++.. ++.+.+.|+.+ ..+..||..+.+..
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 56677777754 3467788776542211110111111222333 45566666632 45788898765532
Q ss_pred ccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCC--------cEEEEEcCCCceeeeCCCCCCceeeeccccCCccc
Q 041325 290 VNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDR--------SILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA 361 (450)
Q Consensus 290 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg--------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (450)
....+.........+. .++.+.+.|+.++ .+.+||..+++.... ..+......
T Consensus 420 ------~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~-----------~~~~~~r~~ 480 (534)
T PHA03098 420 ------KGSPLPISHYGGCAIY--HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTEL-----------SSLNFPRIN 480 (534)
T ss_pred ------ecCCCCccccCceEEE--ECCEEEEECCccCCCCCcccceEEEecCCCCceeeC-----------CCCCccccc
Confidence 1211111111112222 2566667776432 388888887654311 111111111
Q ss_pred eEEEEEeCCeEEEEeCC-----CeEEEeeCCC
Q 041325 362 ILCLAVVSNLLFSGSSD-----NTIRIWRRSS 388 (450)
Q Consensus 362 v~~~~~~~~~l~s~~~d-----g~v~iwd~~~ 388 (450)
...+...+..++.|+.+ +.|.+||..+
T Consensus 481 ~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 481 ASLCIFNNKIYVVGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred ceEEEECCEEEEEcCCcCCcccceeEEEeCCC
Confidence 12333455566666654 4678888775
No 386
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.42 E-value=0.46 Score=45.84 Aligned_cols=151 Identities=17% Similarity=0.168 Sum_probs=83.0
Q ss_pred CceEEEEEccCCCEEEEEe------CCC--cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEc---------
Q 041325 211 DTVSALALSSDGSLLYSTS------WDR--TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGS--------- 273 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~~~~------~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--------- 273 (450)
..+...+++|+|+.++..- .|. .|.+++.. +.. ..+..+ .....-.|+|+++ .+++..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~g--~~~t~PsWspDG~-~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLEG--HSLTRPSWSLDAD-AVWVVVDGNTVVRVI 424 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeecC--CCCCCceECCCCC-ceEEEecCcceEEEe
Confidence 4678889999999877665 244 45555542 222 333312 2367778888544 333332
Q ss_pred ---CCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEE---EEcCCCceeeeCCCCCC
Q 041325 274 ---ADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILV---WERDQGNYIVDGDDDSG 347 (450)
Q Consensus 274 ---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~v---wd~~~~~~~~~~~~~~~ 347 (450)
..+.+.+.+++.++ ... .....|..+.|+|||..++... +|.|++ -....|..-
T Consensus 425 ~~~~~gql~~~~vd~ge--------~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~-------- 484 (591)
T PRK13616 425 RDPATGQLARTPVDASA--------VAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYA-------- 484 (591)
T ss_pred ccCCCceEEEEeccCch--------hhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCcee--------
Confidence 22344444443332 111 3356799999999999888766 577776 333333211
Q ss_pred ceeeecccc-CCccceEEEEEeCC-eEEEEeCCCeEEEeeCC
Q 041325 348 HMVLKGALR-GHTKAILCLAVVSN-LLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 348 ~~~~~~~~~-~~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~ 387 (450)
......+. .-...+..+.|.++ .|+.+..++...+|.+.
T Consensus 485 -l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~ 525 (591)
T PRK13616 485 -LTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVN 525 (591)
T ss_pred -ecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEe
Confidence 00011121 22233577889854 45566665555566554
No 387
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.29 E-value=0.82 Score=41.35 Aligned_cols=55 Identities=7% Similarity=0.146 Sum_probs=38.3
Q ss_pred CCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEEEcCCCceeE
Q 041325 94 NGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVWKIDNNTSAY 161 (450)
Q Consensus 94 dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~~~~~~~~~ 161 (450)
.+.+.|+|+++++...... ....+....|+|++ .++--.++.|.+++..++....
T Consensus 22 ~~~y~i~d~~~~~~~~l~~-------------~~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~ 77 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTP-------------PPPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQ 77 (353)
T ss_dssp EEEEEEEETTTTEEEESS--------------EETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEE
T ss_pred ceeEEEEecCCCceEECcC-------------CccccccceeecCCCeeEEEecCceEEEECCCCCeEE
Confidence 4678999999977555411 14578889999888 4444557899999988775433
No 388
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.25 E-value=0.2 Score=47.73 Aligned_cols=37 Identities=19% Similarity=0.153 Sum_probs=31.3
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceee
Q 041325 304 KSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIV 340 (450)
Q Consensus 304 ~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~ 340 (450)
.+.+..+..||+.++|+-=..+|.|.+-+....+.+.
T Consensus 216 ~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lc 252 (829)
T KOG2280|consen 216 NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILC 252 (829)
T ss_pred CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhh
Confidence 4667889999999999999999999999888766553
No 389
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=96.25 E-value=0.92 Score=41.49 Aligned_cols=114 Identities=15% Similarity=0.210 Sum_probs=80.1
Q ss_pred eEEEEEccCCC-EEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEc--CCCcEEEEeCcchhhh
Q 041325 213 VSALALSSDGS-LLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGS--ADTKIKVWKKLRAALQ 289 (450)
Q Consensus 213 v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~ 289 (450)
-..++.++.+. ..+....++.|.+.|..+.+.......+. ....+++.+.+....++-. .++.+.+.|..+.+
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~-- 151 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK-- 151 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe--
Confidence 45677888777 44555556899999988888877776333 6788899986665555555 37888888876655
Q ss_pred ccccchhhhhHhhcccceEEEEEcCCCCEEEEee-CCCcEEEEEcCCCc
Q 041325 290 VNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA-CDRSILVWERDQGN 337 (450)
Q Consensus 290 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~-~dg~i~vwd~~~~~ 337 (450)
..........+ ..++++|+|+.++... .++.|.+.|.....
T Consensus 152 ------~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~ 193 (381)
T COG3391 152 ------VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNS 193 (381)
T ss_pred ------EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcc
Confidence 33332222233 8899999999666655 78899999976544
No 390
>PHA02790 Kelch-like protein; Provisional
Probab=96.22 E-value=0.62 Score=44.13 Aligned_cols=145 Identities=11% Similarity=0.083 Sum_probs=70.2
Q ss_pred CCCEEEEEeCCC-----cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC--CcEEEEeCcchhhhcccc
Q 041325 221 DGSLLYSTSWDR-----TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD--TKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 221 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--g~i~vwd~~~~~~~~~~~ 293 (450)
++.++++|+.++ .+..||..+.+-...-.......-.+++.. ++.+.+.|+.+ ..+..||..+++
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~--~~~iYviGG~~~~~sve~ydp~~n~------ 342 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPA--NNKLYVVGGLPNPTSVERWFHGDAA------ 342 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEE--CCEEEEECCcCCCCceEEEECCCCe------
Confidence 455667777543 466788877653322110111111223333 55566777754 357778865543
Q ss_pred chhhhhHhhcccceEEEEEcCCCCEEEEeeCCC---cEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC
Q 041325 294 HSLVQTLEKHKSAVTALALSTDGTVLYSGACDR---SILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN 370 (450)
Q Consensus 294 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 370 (450)
+..+..+.........+.+ +|++.+.|+.++ .+..||..+.+... ...+............++.
T Consensus 343 W~~~~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~-----------~~~m~~~r~~~~~~~~~~~ 409 (480)
T PHA02790 343 WVNMPSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQF-----------GPSTYYPHYKSCALVFGRR 409 (480)
T ss_pred EEECCCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEe-----------CCCCCCccccceEEEECCE
Confidence 2222223222222222333 677777777654 46678877654331 1111111111223344455
Q ss_pred eEEEEeCCCeEEEeeCCCC
Q 041325 371 LLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 371 ~l~s~~~dg~v~iwd~~~~ 389 (450)
..+.| |.+.+||..+.
T Consensus 410 IYv~G---G~~e~ydp~~~ 425 (480)
T PHA02790 410 LFLVG---RNAEFYCESSN 425 (480)
T ss_pred EEEEC---CceEEecCCCC
Confidence 55555 35778888753
No 391
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=96.20 E-value=0.18 Score=46.42 Aligned_cols=116 Identities=14% Similarity=0.086 Sum_probs=74.5
Q ss_pred CCceEEEEEccCCCEEEEEe---CC-CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEE--eC
Q 041325 210 VDTVSALALSSDGSLLYSTS---WD-RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVW--KK 283 (450)
Q Consensus 210 ~~~v~~~~~~~~~~~l~~~~---~d-g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw--d~ 283 (450)
...+..-+|+|++..++-.. .. ..+.++|+++++...... ..+.-..-+|+|++..++++...||...+| |+
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~--~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl 269 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN--FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDL 269 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec--cCCccCCccCCCCCCEEEEEECCCCCccEEEEcC
Confidence 33556667888887655442 22 469999999887666654 445556678999888888888888876655 55
Q ss_pred cchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC-CCc--EEEEEcCCC
Q 041325 284 LRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC-DRS--ILVWERDQG 336 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~-dg~--i~vwd~~~~ 336 (450)
..+. ...+....+.-+.-.|+|||+.|+-.+. .|. |.+++.+.+
T Consensus 270 ~~~~---------~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~ 316 (425)
T COG0823 270 DGKN---------LPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGS 316 (425)
T ss_pred CCCc---------ceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCC
Confidence 4433 1123222333336679999998877654 444 666666544
No 392
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=96.20 E-value=0.77 Score=40.17 Aligned_cols=203 Identities=13% Similarity=0.149 Sum_probs=109.0
Q ss_pred EEEEEccCCCEEEEEe--CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc
Q 041325 214 SALALSSDGSLLYSTS--WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN 291 (450)
Q Consensus 214 ~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 291 (450)
..++++.++++++... -...|.|.|+..++.+.++.. .+ |....|..+.-+.+-|.||.+.-..+.......
T Consensus 98 ~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~--PG---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~- 171 (342)
T PF06433_consen 98 NMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDT--PG---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEA- 171 (342)
T ss_dssp GGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEG--TS---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEE-
T ss_pred cceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecC--CC---EEEEEecCCCceEEEecCCceEEEEECCCCCEe-
Confidence 3467788888877753 356788999999998888762 22 222234455567888899999998887432111
Q ss_pred ccchhhhhHhhcccce-EEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeecccc--CC--ccceEEEE
Q 041325 292 KKHSLVQTLEKHKSAV-TALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALR--GH--TKAILCLA 366 (450)
Q Consensus 292 ~~~~~~~~~~~~~~~i-~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~v~~~~ 366 (450)
.. ....+.....++ ..-++...+..++--+.+|.|+--|+......... .+.+..... .. .+.-.-++
T Consensus 172 ~~--~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~-----~~~~~t~~e~~~~WrPGG~Q~~A 244 (342)
T PF06433_consen 172 QK--STKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGK-----PWSLLTDAEKADGWRPGGWQLIA 244 (342)
T ss_dssp EE--EEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEE-----EEESS-HHHHHTTEEE-SSS-EE
T ss_pred Ee--eccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccC-----cccccCccccccCcCCcceeeee
Confidence 11 111222222222 23345555555666788999999888765432100 000000000 00 01112234
Q ss_pred Ee--CCeEEEEe--------CCC--eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEE
Q 041325 367 VV--SNLLFSGS--------SDN--TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFL 434 (450)
Q Consensus 367 ~~--~~~l~s~~--------~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~ 434 (450)
++ .+.|..-- .|+ .|-++|+.+. +.+..+.. ..++.+|+.+.+.+- +
T Consensus 245 ~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~--------krv~Ri~l-~~~~~Si~Vsqd~~P------------~ 303 (342)
T PF06433_consen 245 YHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH--------KRVARIPL-EHPIDSIAVSQDDKP------------L 303 (342)
T ss_dssp EETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTT--------EEEEEEEE-EEEESEEEEESSSS-------------E
T ss_pred eccccCeEEEEecCCCCCCccCCceEEEEEECCCC--------eEEEEEeC-CCccceEEEccCCCc------------E
Confidence 44 22222221 122 3555566653 66666653 346889999887762 5
Q ss_pred EEEc-ccCCcEEEEEeC
Q 041325 435 VYSG-SLDCEIKIWQIR 450 (450)
Q Consensus 435 l~s~-~~Dg~i~iw~l~ 450 (450)
|++. ..++.|.+||.+
T Consensus 304 L~~~~~~~~~l~v~D~~ 320 (342)
T PF06433_consen 304 LYALSAGDGTLDVYDAA 320 (342)
T ss_dssp EEEEETTTTEEEEEETT
T ss_pred EEEEcCCCCeEEEEeCc
Confidence 6544 568999999863
No 393
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.14 E-value=0.19 Score=50.29 Aligned_cols=141 Identities=13% Similarity=0.049 Sum_probs=87.4
Q ss_pred ceEEEEEccCCCEEEEEe--CCCcEEEEecCCCeEEE-----Eee-----cccccceEEEEEeecCCcEEEEEcCCCcEE
Q 041325 212 TVSALALSSDGSLLYSTS--WDRTFKIWRTSDFRCLE-----SVK-----NAHDDAINAIVVSKSNDGFVYTGSADTKIK 279 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~-----~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 279 (450)
++..+...+|+...++.. .+-.|..||+++...-. .+. ........++.|+|.-....++...|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 556666677766544443 34478899987643211 010 012334567788886666688888999999
Q ss_pred EEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCc
Q 041325 280 VWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT 359 (450)
Q Consensus 280 vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (450)
+..+.... .....+ ......++++|+|.|+.+++|...|++.-|...-. .... +...-....
T Consensus 182 V~~~~~~~-------~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~---------ip~Pp~~e~ 243 (1405)
T KOG3630|consen 182 VKSTKQLA-------QNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSE---------IPEPPVEEN 243 (1405)
T ss_pred hhhhhhhh-------hhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccc-eeec---------ccCCCcCCC
Confidence 98764322 112222 23456799999999999999999999998876522 1100 001111115
Q ss_pred cceEEEEEeCC
Q 041325 360 KAILCLAVVSN 370 (450)
Q Consensus 360 ~~v~~~~~~~~ 370 (450)
..|.++.|-+.
T Consensus 244 yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 244 YRVLSVTWLST 254 (1405)
T ss_pred cceeEEEEecc
Confidence 78999999865
No 394
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.91 E-value=2.1 Score=42.75 Aligned_cols=73 Identities=10% Similarity=0.138 Sum_probs=46.9
Q ss_pred eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEE------------------eCCeEEEEeC
Q 041325 84 AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVV------------------LGDKLFSAHQ 145 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~------------------~~~~l~s~~~ 145 (450)
.+..|+.++.++.|.-.|..+++.+............. .| .....+.+ ..+.++.++.
T Consensus 193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~---~~-~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~ 268 (764)
T TIGR03074 193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGR---QH-QTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTS 268 (764)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccc---cc-ccccceEEecCCcccccccccccccccCCEEEEecC
Confidence 46677778888999999999999877654433211100 01 01122222 2345888999
Q ss_pred CCeEEEEEcCCCcee
Q 041325 146 DHKIRVWKIDNNTSA 160 (450)
Q Consensus 146 dg~i~iw~~~~~~~~ 160 (450)
|+.+.-.|.++++..
T Consensus 269 Dg~LiALDA~TGk~~ 283 (764)
T TIGR03074 269 DARLIALDADTGKLC 283 (764)
T ss_pred CCeEEEEECCCCCEE
Confidence 999999999988543
No 395
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=95.55 E-value=1.8 Score=39.21 Aligned_cols=190 Identities=13% Similarity=0.104 Sum_probs=93.5
Q ss_pred CceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeeccc----------------ccceEEEEEeecCCcEEEEEcC
Q 041325 211 DTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAH----------------DDAINAIVVSKSNDGFVYTGSA 274 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------------~~~v~~~~~~~~~~~~l~~~~~ 274 (450)
..+....|+|+|+.++-.. ++.|.+++..+++..+.-..+. -+.-..+-|+|++..+++.-..
T Consensus 43 ~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d 121 (353)
T PF00930_consen 43 PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD 121 (353)
T ss_dssp TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred cccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence 3678889999999988876 6889999988775443322110 1233567788876654444444
Q ss_pred CCcEEEE-----------------------------------eCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEE
Q 041325 275 DTKIKVW-----------------------------------KKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVL 319 (450)
Q Consensus 275 dg~i~vw-----------------------------------d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l 319 (450)
+..|+.+ |+.+++. ...............+..+.|.++++.|
T Consensus 122 ~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~---~~~~~~~~~~~~~~yl~~v~W~~d~~~l 198 (353)
T PF00930_consen 122 EREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKT---TELDPPNSLNPQDYYLTRVGWSPDGKRL 198 (353)
T ss_dssp -TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCC---CEE---HHHHTSSEEEEEEEEEETTEEE
T ss_pred CcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcE---EEeeeccccCCCccCcccceecCCCcEE
Confidence 4433333 3322220 0111111223345668889999998844
Q ss_pred EEee--CC---CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe---CC-eEEEEeCCCeEEEeeCCCCc
Q 041325 320 YSGA--CD---RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV---SN-LLFSGSSDNTIRIWRRSSSV 390 (450)
Q Consensus 320 ~~g~--~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~-~l~s~~~dg~v~iwd~~~~~ 390 (450)
+..- .+ ..+.++|..+++.-.. ......+--..-..+.+. ++ ++.....||--.||-+...
T Consensus 199 ~~~~~nR~q~~~~l~~~d~~tg~~~~~---------~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~- 268 (353)
T PF00930_consen 199 WVQWLNRDQNRLDLVLCDASTGETRVV---------LEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLD- 268 (353)
T ss_dssp EEEEEETTSTEEEEEEEEECTTTCEEE---------EEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETT-
T ss_pred EEEEcccCCCEEEEEEEECCCCceeEE---------EEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccc-
Confidence 4332 22 2366677766543211 111111111111223332 22 6666667776555544421
Q ss_pred cccCCCceeEEEecCCCcceEE-EEEEecCC
Q 041325 391 TDHQKGYSCLAVLEGHRRPVKC-LTAVVDSD 420 (450)
Q Consensus 391 ~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~ 420 (450)
......+....-.|.. +.+.++++
T Consensus 269 ------~~~~~~lT~G~~~V~~i~~~d~~~~ 293 (353)
T PF00930_consen 269 ------GGKPRQLTSGDWEVTSILGWDEDNN 293 (353)
T ss_dssp ------SSEEEESS-SSS-EEEEEEEECTSS
T ss_pred ------ccceeccccCceeecccceEcCCCC
Confidence 1223455545556655 55666655
No 396
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=95.50 E-value=1.1 Score=41.10 Aligned_cols=153 Identities=11% Similarity=0.107 Sum_probs=84.6
Q ss_pred CCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcC-----CCCEEEEeeCCCcEEEEEcCCCcee
Q 041325 265 NDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST-----DGTVLYSGACDRSILVWERDQGNYI 339 (450)
Q Consensus 265 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-----~~~~l~~g~~dg~i~vwd~~~~~~~ 339 (450)
+...+++|+..|.++||+...+.... ...+-+ ...+.+|-.+..-+ +...|++ =.-..+.||.+.....
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~---~~lllE-~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g- 109 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQP---EDLLLE-TQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDG- 109 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCC---ccEEEE-EecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCC-
Confidence 34589999999999999985443111 011111 12456777776532 2234444 4567788888732110
Q ss_pred eeCCCCCCceeeeccccCCccceEEEE-----Ee----CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcce
Q 041325 340 VDGDDDSGHMVLKGALRGHTKAILCLA-----VV----SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPV 410 (450)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~v~~~~-----~~----~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v 410 (450)
..+.+..........|.-.-++.. |. .++++.=+.||.+.+|+-+.- .....+.+ .--.
T Consensus 110 ---~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~--------~f~~~lp~-~llP 177 (418)
T PF14727_consen 110 ---TVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESF--------AFSRFLPD-FLLP 177 (418)
T ss_pred ---CcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcE--------EEEEEcCC-CCCC
Confidence 001111111122223332222222 22 248999999999999997742 22222222 2233
Q ss_pred EEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 411 KCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 411 ~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
.-+.+.+..+ .+++++.+..|.-|+
T Consensus 178 gPl~Y~~~tD-------------sfvt~sss~~l~~Yk 202 (418)
T PF14727_consen 178 GPLCYCPRTD-------------SFVTASSSWTLECYK 202 (418)
T ss_pred cCeEEeecCC-------------EEEEecCceeEEEec
Confidence 4567777777 788888888777665
No 397
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.48 E-value=1.3 Score=37.33 Aligned_cols=69 Identities=13% Similarity=0.232 Sum_probs=42.5
Q ss_pred cccceEEEEEcCCCCEEEEeeC-CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeE
Q 041325 303 HKSAVTALALSTDGTVLYSGAC-DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTI 381 (450)
Q Consensus 303 ~~~~i~~l~~~~~~~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v 381 (450)
....|-+++.+.+..+++..+- .+...+||..++..+.+ ..+ .....++....-++..+.+|.+
T Consensus 278 ~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~-----------a~l----~daaGva~~~~gf~vssg~G~~ 342 (366)
T COG3490 278 FANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSE-----------AAL----PDAAGVAAAKGGFAVSSGQGRI 342 (366)
T ss_pred HHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEec-----------ccc----cccccceeccCceEEecCCceE
Confidence 3456778888876666655554 45678999999875521 111 1223444455556666778888
Q ss_pred EEeeC
Q 041325 382 RIWRR 386 (450)
Q Consensus 382 ~iwd~ 386 (450)
.++.-
T Consensus 343 ~~~s~ 347 (366)
T COG3490 343 IFYSR 347 (366)
T ss_pred Eeccc
Confidence 87743
No 398
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=95.45 E-value=1.4 Score=37.40 Aligned_cols=190 Identities=14% Similarity=0.111 Sum_probs=106.8
Q ss_pred ceeeeecCC-CceEEEEEccCCCEEEEEeCCCcEEEEecCC---CeEEEEeecccccceEEEEEeecCCcEEEEEcCCCc
Q 041325 202 KKCTWVHHV-DTVSALALSSDGSLLYSTSWDRTFKIWRTSD---FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTK 277 (450)
Q Consensus 202 ~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 277 (450)
....+.+|- +.|..+....+-.++..|-.--..-+|+... ...+..+. ..+.+..+.++ + .+...+..+.-
T Consensus 33 v~~~~vghfg~~vsavdv~~~ya~v~qG~~l~i~ditn~~~~t~~~l~~~i~--~~~l~~Dv~vs--e-~yvyvad~ssG 107 (370)
T COG5276 33 VGYAYVGHFGKGVSAVDVRGAYAYVGQGFILAILDITNVSLQTHDVLLSVIN--ARDLFADVRVS--E-EYVYVADWSSG 107 (370)
T ss_pred cceEEeeeccCCcccccccccccccccCceEeeccccCcccccCcceEEEEe--hhhhhheeEec--c-cEEEEEcCCCc
Confidence 334444554 4455554443333333322112233444431 12222332 45667778886 3 47777777788
Q ss_pred EEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccC
Q 041325 278 IKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG 357 (450)
Q Consensus 278 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (450)
+++.|+.+.. ...++..+. ..+--.++.. .|++..++..|.-+.+.|+.+... ..+......
T Consensus 108 L~IvDIS~P~-----sP~~~~~ln-t~gyaygv~v--sGn~aYVadlddgfLivdvsdpss----------P~lagrya~ 169 (370)
T COG5276 108 LRIVDISTPD-----SPTLIGFLN-TDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSS----------PQLAGRYAL 169 (370)
T ss_pred eEEEeccCCC-----Ccceecccc-CCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCC----------ceeeeeecc
Confidence 9999997765 111222222 2233344444 588998888666677889876431 123334444
Q ss_pred CccceEEEEEeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 358 HTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 358 ~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
....-..++.+|++-..+..|+-+.+-|+.... ....+.... -...+.++..+++..
T Consensus 170 ~~~d~~~v~ISGn~AYvA~~d~GL~ivDVSnp~-----sPvli~~~n-~g~g~~sv~vsdnr~ 226 (370)
T COG5276 170 PGGDTHDVAISGNYAYVAWRDGGLTIVDVSNPH-----SPVLIGSYN-TGPGTYSVSVSDNRA 226 (370)
T ss_pred CCCCceeEEEecCeEEEEEeCCCeEEEEccCCC-----CCeEEEEEe-cCCceEEEEecCCee
Confidence 444456788899999999999999999998742 122332221 222567777776655
No 399
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.40 E-value=0.81 Score=44.44 Aligned_cols=105 Identities=10% Similarity=0.127 Sum_probs=66.9
Q ss_pred CCCEEEEEeCCCcEEEEecCC-------C-------------eEEEEeecccccceEEEEEe--ecCCcEEEEEcCCCcE
Q 041325 221 DGSLLYSTSWDRTFKIWRTSD-------F-------------RCLESVKNAHDDAINAIVVS--KSNDGFVYTGSADTKI 278 (450)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~-------~-------------~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~dg~i 278 (450)
+...|+.+.+||.|.+|.+++ . ++...+ .....++.++++ . ...++|+++....|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~--~v~~SaWGLdIh~~~-~~rlIAVSsNs~~V 189 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHL--RVGASAWGLDIHDYK-KSRLIAVSSNSQEV 189 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEe--ecCCceeEEEEEecC-cceEEEEecCCceE
Confidence 445677777777777775421 0 111122 245688999987 4 44578888888999
Q ss_pred EEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCC---C---EEEEeeCCCcEEEEEc
Q 041325 279 KVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDG---T---VLYSGACDRSILVWER 333 (450)
Q Consensus 279 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~---~---~l~~g~~dg~i~vwd~ 333 (450)
.||-...... ...... -..+...|-+|+|-++. . .+++++-.|.+.+|++
T Consensus 190 TVFaf~l~~~----r~~~~~-s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 190 TVFAFALVDE----RFYHVP-SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEEecccc----cccccc-ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 9887654220 100111 11266778899997743 2 7888899999999888
No 400
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=95.39 E-value=0.34 Score=44.61 Aligned_cols=77 Identities=19% Similarity=0.150 Sum_probs=45.6
Q ss_pred cccceEEEEEeecCCcEEEEEcCC---CcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEee-CCCc
Q 041325 252 HDDAINAIVVSKSNDGFVYTGSAD---TKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA-CDRS 327 (450)
Q Consensus 252 ~~~~v~~~~~~~~~~~~l~~~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~-~dg~ 327 (450)
....+..-.|+|+...+....-.. ..+.++|+.+++.. .+..+. +.-..-+|+|||+.|+... .||.
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~------~i~~~~---g~~~~P~fspDG~~l~f~~~rdg~ 261 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRP------VILNFN---GNNGAPAFSPDGSKLAFSSSRDGS 261 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccc------eeeccC---CccCCccCCCCCCEEEEEECCCCC
Confidence 345566667887666543333222 35889998776511 122222 3334568999998776554 4554
Q ss_pred --EEEEEcCCCc
Q 041325 328 --ILVWERDQGN 337 (450)
Q Consensus 328 --i~vwd~~~~~ 337 (450)
|+++|+..+.
T Consensus 262 ~~iy~~dl~~~~ 273 (425)
T COG0823 262 PDIYLMDLDGKN 273 (425)
T ss_pred ccEEEEcCCCCc
Confidence 6677777654
No 401
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.38 E-value=2.1 Score=39.09 Aligned_cols=91 Identities=18% Similarity=0.296 Sum_probs=60.8
Q ss_pred EEEEccCCCEEEEEeCCCcEEE---EecC-----CCeEEEE----eecccccceEEEEEeec----------CCcEEEEE
Q 041325 215 ALALSSDGSLLYSTSWDRTFKI---WRTS-----DFRCLES----VKNAHDDAINAIVVSKS----------NDGFVYTG 272 (450)
Q Consensus 215 ~~~~~~~~~~l~~~~~dg~i~i---wd~~-----~~~~~~~----~~~~~~~~v~~~~~~~~----------~~~~l~~~ 272 (450)
.++.+|++++|+.+..+..+.+ |+.. .+..... +.......|+++.+.|- +...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 4678899999999987776665 6431 1122211 11111257888887764 12369999
Q ss_pred cCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcC
Q 041325 273 SADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST 314 (450)
Q Consensus 273 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 314 (450)
..+|.|++|.- ++ .++....-|..+|..+.+..
T Consensus 86 ~ssG~vrfyte-~G--------~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTE-NG--------VLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEec-cc--------hHHHHHhcCccceEEEEecc
Confidence 99999999984 33 36666667899999888753
No 402
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.37 E-value=1.4 Score=42.36 Aligned_cols=190 Identities=7% Similarity=-0.066 Sum_probs=99.9
Q ss_pred cceeeeEEeecCCCcceEEEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeE
Q 041325 62 EHQCSATLKVKGNSSYIPSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKL 140 (450)
Q Consensus 62 ~~~~~~~l~~~~h~~~v~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l 140 (450)
.++++.++. -....+-.+.| +..-|+.-..||+++|+++........ . +........|..+.+..+++
T Consensus 72 sG~lL~~~~--w~~~~lI~mgWs~~eeLI~v~k~g~v~Vy~~~ge~ie~~-s--------vg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 72 SGQLLGRIL--WKHGELIGMGWSDDEELICVQKDGTVHVYGLLGEFIESN-S--------VGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred cccchHHHH--hcCCCeeeecccCCceEEEEeccceEEEeecchhhhccc-c--------cccccccCceeEEEEecCce
Confidence 345555555 33448888999 688889999999999999876543321 0 00112234566667766776
Q ss_pred EEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeE--eeecCc----eEEEeecceeeeecCCCceE
Q 041325 141 FSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTK--CFLANN----YVQVRRHKKCTWVHHVDTVS 214 (450)
Q Consensus 141 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~v~ 214 (450)
+.-..+|.+.+-+-.........+.-........+...+......... ...... .+.........+..-.+.+.
T Consensus 141 avlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ 220 (829)
T KOG2280|consen 141 AVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVV 220 (829)
T ss_pred EEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEE
Confidence 666666666554322221111000000000000111111111111100 000000 00000011111222235678
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEe
Q 041325 215 ALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVS 262 (450)
Q Consensus 215 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 262 (450)
.+..+|+.++|+--...|.|.+-+.+..++...+..........++|.
T Consensus 221 ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wc 268 (829)
T KOG2280|consen 221 KISVSPNRRFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWC 268 (829)
T ss_pred EEEEcCCcceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceee
Confidence 889999999999999999999999887777777764444444567776
No 403
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=95.37 E-value=1.8 Score=38.04 Aligned_cols=179 Identities=14% Similarity=0.064 Sum_probs=91.8
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeec----ccccceEEEEEeecCCcEEEEEcCC------------
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKN----AHDDAINAIVVSKSNDGFVYTGSAD------------ 275 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~l~~~~~d------------ 275 (450)
.+.++..-..+..|+++. .-+.+++.+++..+..+.. ......+.+.+.|++ .+..+...
T Consensus 67 ~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG--~~wfgt~~~~~~~~~~~~~~ 142 (307)
T COG3386 67 GFSSGALIDAGGRLIACE--HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDG--RIWFGDMGYFDLGKSEERPT 142 (307)
T ss_pred CcccceeecCCCeEEEEc--cccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCC--CEEEeCCCccccCccccCCc
Confidence 344444444444455443 3456666665554322221 122455677777643 34444333
Q ss_pred CcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC-CcEEEEEcCCCceeeeCCCCCCceeeecc
Q 041325 276 TKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD-RSILVWERDQGNYIVDGDDDSGHMVLKGA 354 (450)
Q Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 354 (450)
|.|+.+|. .+. .......+-..-+.|+||||++.|+.+... +.|+.|++..... ..... .....
T Consensus 143 G~lyr~~p-~g~--------~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g----~~~~~--~~~~~ 207 (307)
T COG3386 143 GSLYRVDP-DGG--------VVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATG----PIGGR--RGFVD 207 (307)
T ss_pred ceEEEEcC-CCC--------EEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccC----ccCCc--ceEEE
Confidence 22333332 121 223333334556789999999888777654 7888888763100 00000 11111
Q ss_pred ccCCccceEEEEEe--CCeEEEEeCCC-eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEec
Q 041325 355 LRGHTKAILCLAVV--SNLLFSGSSDN-TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVD 418 (450)
Q Consensus 355 ~~~~~~~v~~~~~~--~~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 418 (450)
.....+..-.++.+ +++-+++-.+| .|.+|+.. + +.+..+.-....+++++|--.
T Consensus 208 ~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G--------~l~~~i~lP~~~~t~~~FgG~ 265 (307)
T COG3386 208 FDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G--------KLLGEIKLPVKRPTNPAFGGP 265 (307)
T ss_pred ccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C--------cEEEEEECCCCCCccceEeCC
Confidence 22223333344444 44443444443 89999887 3 566666666677888888653
No 404
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.35 E-value=0.17 Score=50.61 Aligned_cols=156 Identities=10% Similarity=0.005 Sum_probs=90.6
Q ss_pred eeeeEEeecCCCcceEEEEE-eCCEEEEe--eCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-
Q 041325 64 QCSATLKVKGNSSYIPSLAI-AGKLLYGG--SSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~-d~~~l~tg--s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~- 139 (450)
....+++.++.--.+.-+++ |+...+.. +.+-.|..+|+.+-....... ..................++.|+|.-
T Consensus 90 ~~~~t~~v~k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~-~~pl~~s~ts~ek~vf~~~~~wnP~vp 168 (1405)
T KOG3630|consen 90 DENLTFKVEKEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYET-TVPLKNSATSFEKPVFQLKNVWNPLVP 168 (1405)
T ss_pred ccccceeeeccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhh-ccccccccchhccccccccccccCCcc
Confidence 33455554333333444444 65554433 333478899987644222111 11111111122233456677787554
Q ss_pred --EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEE
Q 041325 140 --LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALA 217 (450)
Q Consensus 140 --l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 217 (450)
.+.+..|+.|++..+..... ....+ .....+++++
T Consensus 169 ~n~av~l~dlsl~V~~~~~~~~---------------~v~s~----------------------------p~t~~~Tav~ 205 (1405)
T KOG3630|consen 169 LNSAVDLSDLSLRVKSTKQLAQ---------------NVTSF----------------------------PVTNSQTAVL 205 (1405)
T ss_pred chhhhhccccchhhhhhhhhhh---------------hhccc----------------------------CcccceeeEE
Confidence 77888899999887765421 11111 1344689999
Q ss_pred EccCCCEEEEEeCCCcEEEEecCCCeEEEEee---cccccceEEEEEeec
Q 041325 218 LSSDGSLLYSTSWDRTFKIWRTSDFRCLESVK---NAHDDAINAIVVSKS 264 (450)
Q Consensus 218 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~ 264 (450)
|+|.|+.++.|-..|++.-|... ++....+. ......|.+|.|...
T Consensus 206 WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 206 WSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred eccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecc
Confidence 99999999999999999988764 33333332 123478999999853
No 405
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=95.27 E-value=0.0046 Score=55.18 Aligned_cols=145 Identities=16% Similarity=0.166 Sum_probs=100.4
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN 291 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 291 (450)
......|-+.+.-++.++.+..+..||-.. +...... ..+....++|....+..++.+...+.+.+||+.+..
T Consensus 36 ~pi~~~w~~e~~nlavaca~tiv~~YD~ag-q~~le~n--~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey---- 108 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVACANTIVIYYDKAG-QVILELN--PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY---- 108 (615)
T ss_pred ccceeeEecCCCceehhhhhhHHHhhhhhc-ceecccC--CchhHhhhhhccccchhhhhhhcCCCeeechhhhhh----
Confidence 344556778766688888888999998653 3333332 456667788887666677888889999999987654
Q ss_pred ccchhhhhHh-hcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe-C
Q 041325 292 KKHSLVQTLE-KHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV-S 369 (450)
Q Consensus 292 ~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~ 369 (450)
.+.++ +....-.-+.|++.+..++.|...|.+.|++..+.+.+ .....|...++++++. .
T Consensus 109 -----tqqLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~i-------------iv~Gkh~RRgtq~av~lE 170 (615)
T KOG2247|consen 109 -----TQQLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRI-------------IVMGKHQRRGTQIAVTLE 170 (615)
T ss_pred -----HHHHhccCcchHHHHhhccCCccccccccccceEEEeccchhhh-------------hhhcccccceeEEEeccc
Confidence 12221 11222222789998889999999999999998876543 2344488889999998 4
Q ss_pred CeEEEEeCCCeE
Q 041325 370 NLLFSGSSDNTI 381 (450)
Q Consensus 370 ~~l~s~~~dg~v 381 (450)
++.+.++.|..+
T Consensus 171 d~vil~dcd~~L 182 (615)
T KOG2247|consen 171 DYVILCDCDNTL 182 (615)
T ss_pred ceeeecCcHHHH
Confidence 577777665443
No 406
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.25 E-value=1.7 Score=42.43 Aligned_cols=153 Identities=9% Similarity=0.099 Sum_probs=91.1
Q ss_pred CCEEEEEeCCCcEEEEecCCCeEEE------Eee---------------cccccceEEEEEeec-CCcEEEEEcCCCcEE
Q 041325 222 GSLLYSTSWDRTFKIWRTSDFRCLE------SVK---------------NAHDDAINAIVVSKS-NDGFVYTGSADTKIK 279 (450)
Q Consensus 222 ~~~l~~~~~dg~i~iwd~~~~~~~~------~~~---------------~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~ 279 (450)
.++++++. .+.|.||++....... .+. ......|+.|....- +...|+.+..||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 66677665 7899999986533211 110 012234555544332 233689999999999
Q ss_pred EEeCcchhhhcccc------------chhhhhHhhcccceEEEEEc--CCCCEEEEeeCCCcEEEEEcCCCceeeeCCCC
Q 041325 280 VWKKLRAALQVNKK------------HSLVQTLEKHKSAVTALALS--TDGTVLYSGACDRSILVWERDQGNYIVDGDDD 345 (450)
Q Consensus 280 vwd~~~~~~~~~~~------------~~~~~~~~~~~~~i~~l~~~--~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 345 (450)
+|.+++-....... ..+...+. -...+++++++ ...++||+++....|.||-+.....-
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r------ 200 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDER------ 200 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEEEEEEeccccc------
Confidence 99764321000000 00111111 33578999998 78889999998888888876542100
Q ss_pred CCceeeeccccCCccceEEEEEe-----CC---eEEEEeCCCeEEEeeC
Q 041325 346 SGHMVLKGALRGHTKAILCLAVV-----SN---LLFSGSSDNTIRIWRR 386 (450)
Q Consensus 346 ~~~~~~~~~~~~~~~~v~~~~~~-----~~---~l~s~~~dg~v~iwd~ 386 (450)
. ....-..|...|-+++|. +. .|++++-.|.+.+|++
T Consensus 201 -~---~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 201 -F---YHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred -c---ccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 0 001111256677888885 22 7888999999999887
No 407
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=95.11 E-value=0.86 Score=43.82 Aligned_cols=121 Identities=16% Similarity=0.198 Sum_probs=74.2
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCc-EEEEEcCCCcEEEEeCcc-hhhh
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDG-FVYTGSADTKIKVWKKLR-AALQ 289 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~-~~~~ 289 (450)
...-+.-+.-++..++-+....+.|||.+.+.......-...+.|.++.|...+++ .+++.+..+.|.+|--.. ....
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~ 110 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTN 110 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhc
Confidence 34444455555555555556689999999887544433245789999999865554 466666778888885421 1111
Q ss_pred ccccchhhhhH--hhc-ccceEEEEEcCCCCEEEEeeCCCcEEEEEcC
Q 041325 290 VNKKHSLVQTL--EKH-KSAVTALALSTDGTVLYSGACDRSILVWERD 334 (450)
Q Consensus 290 ~~~~~~~~~~~--~~~-~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~ 334 (450)
....+..+..+ ..+ ..+|.+..|.++|.+++.. ++.+.|+|-.
T Consensus 111 ~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 111 KGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDKW 156 (631)
T ss_pred CCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECCC
Confidence 11223333322 122 3678899999998765544 4668888754
No 408
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.03 E-value=3.8 Score=40.66 Aligned_cols=75 Identities=13% Similarity=0.141 Sum_probs=52.4
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCC----------CeE---EEEe-------ecccccceEEEEEeecC--CcEE
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSD----------FRC---LESV-------KNAHDDAINAIVVSKSN--DGFV 269 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----------~~~---~~~~-------~~~~~~~v~~~~~~~~~--~~~l 269 (450)
.|..+.++++|++++..|..|...+ .+.. ++. .+.+ .......|..+.|+|.. +..|
T Consensus 86 ~v~~i~~n~~g~~lal~G~~~v~V~-~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 86 EVHQISLNPTGSLLALVGPRGVVVL-ELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eEEEEEECCCCCEEEEEcCCcEEEE-EeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 6889999999999999887665444 3321 111 1111 12345678999999974 4578
Q ss_pred EEEcCCCcEEEEeCcchh
Q 041325 270 YTGSADTKIKVWKKLRAA 287 (450)
Q Consensus 270 ~~~~~dg~i~vwd~~~~~ 287 (450)
++=+.|+.+|+||+....
T Consensus 165 ~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEecCCEEEEEecCCCC
Confidence 889999999999996543
No 409
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.93 E-value=0.73 Score=44.28 Aligned_cols=105 Identities=10% Similarity=0.164 Sum_probs=64.5
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe----CCeEEEEeCCC
Q 041325 304 KSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV----SNLLFSGSSDN 379 (450)
Q Consensus 304 ~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg 379 (450)
...++-+.-+.-++.-++-+....+.|||.+.+..- ....+ .....|..+.|. ++.+++.+..+
T Consensus 29 i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE-----------~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~ 96 (631)
T PF12234_consen 29 ISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLE-----------YEESF-SEDDPIRDLDWTSTPDGQSILAVGFPH 96 (631)
T ss_pred CCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEE-----------Eeeee-cCCCceeeceeeecCCCCEEEEEEcCc
Confidence 344455555555555555555567999999976532 22333 456789999996 45778888888
Q ss_pred eEEEeeCC-CCccccCCCceeEEEe--cCCC-cceEEEEEEecCC
Q 041325 380 TIRIWRRS-SSVTDHQKGYSCLAVL--EGHR-RPVKCLTAVVDSD 420 (450)
Q Consensus 380 ~v~iwd~~-~~~~~~~~~~~~~~~~--~~h~-~~v~~l~~~~~~~ 420 (450)
.|.+|--. .........+..+..+ ..|+ .+|.+..|.++|.
T Consensus 97 ~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~ 141 (631)
T PF12234_consen 97 HVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT 141 (631)
T ss_pred EEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe
Confidence 88887431 1111112233333333 3344 6799999999987
No 410
>PRK13616 lipoprotein LpqB; Provisional
Probab=94.93 E-value=3.2 Score=40.31 Aligned_cols=149 Identities=9% Similarity=0.083 Sum_probs=77.0
Q ss_pred eEEEEEccCCCEEEEEeCC------------CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEE
Q 041325 213 VSALALSSDGSLLYSTSWD------------RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKV 280 (450)
Q Consensus 213 v~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v 280 (450)
...-.|+|+|+.+++.... +.+.+.++..++... .....|..+.|+|++..+.+.. +|.|.+
T Consensus 399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~----~~~g~Issl~wSpDG~RiA~i~--~g~v~V 472 (591)
T PRK13616 399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS----RVPGPISELQLSRDGVRAAMII--GGKVYL 472 (591)
T ss_pred CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh----ccCCCcCeEEECCCCCEEEEEE--CCEEEE
Confidence 5566788888877766532 223333333332221 1245799999999777554444 467776
Q ss_pred EeCc---chhhhccccchhhhhH-hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCC-CceeeeCCCCCCceeeeccc
Q 041325 281 WKKL---RAALQVNKKHSLVQTL-EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQ-GNYIVDGDDDSGHMVLKGAL 355 (450)
Q Consensus 281 wd~~---~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~ 355 (450)
=-+. .+. ........+ ......+..+.|..++.++ ++..++.-.+|.+.- |.. .. . ..-
T Consensus 473 a~Vvr~~~G~----~~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~--------~~--~-~~~ 536 (591)
T PRK13616 473 AVVEQTEDGQ----YALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSN--------SD--A-LPS 536 (591)
T ss_pred EEEEeCCCCc----eeecccEEeecccCCccccceEecCCEEE-EEecCCCCceEEEecCCcc--------cc--c-cCC
Confidence 3222 222 011111112 1223346789999988854 555555555555431 110 00 0 011
Q ss_pred cCCccceEEEEEeCCeEEEEeCCCeEEE
Q 041325 356 RGHTKAILCLAVVSNLLFSGSSDNTIRI 383 (450)
Q Consensus 356 ~~~~~~v~~~~~~~~~l~s~~~dg~v~i 383 (450)
.....++.+++-.+..++....+|.+.+
T Consensus 537 ~n~~~~v~~vaa~~~~iyv~~~~g~~~l 564 (591)
T PRK13616 537 RNLSAPVVAVAASPSTVYVTDARAVLQL 564 (591)
T ss_pred CCccCceEEEecCCceEEEEcCCceEEe
Confidence 1124566777776666666666774443
No 411
>PHA02790 Kelch-like protein; Provisional
Probab=94.84 E-value=3.7 Score=38.95 Aligned_cols=144 Identities=13% Similarity=0.104 Sum_probs=70.9
Q ss_pred CCCEEEEEeCC--CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCC---cEEEEeCcchhhhccccch
Q 041325 221 DGSLLYSTSWD--RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADT---KIKVWKKLRAALQVNKKHS 295 (450)
Q Consensus 221 ~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~ 295 (450)
++.+.+.|+.+ ..+..||..+.+-...-.......-.+++.. ++.+.+.|+.++ .+..||.+++...
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~------ 389 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQ------ 389 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEE------
Confidence 56677777753 3577788765432211110111111223333 555677777553 4667887765532
Q ss_pred hhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEE
Q 041325 296 LVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSG 375 (450)
Q Consensus 296 ~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~ 375 (450)
....+.........+.+ ++++.+.| |.+.+||..+.+.. ....+.............+...+.|
T Consensus 390 ~~~~m~~~r~~~~~~~~--~~~IYv~G---G~~e~ydp~~~~W~-----------~~~~m~~~r~~~~~~v~~~~IYviG 453 (480)
T PHA02790 390 FGPSTYYPHYKSCALVF--GRRLFLVG---RNAEFYCESSNTWT-----------LIDDPIYPRDNPELIIVDNKLLLIG 453 (480)
T ss_pred eCCCCCCccccceEEEE--CCEEEEEC---CceEEecCCCCcEe-----------EcCCCCCCccccEEEEECCEEEEEC
Confidence 22222111111222222 56666666 35778888765533 1122222222233444556677777
Q ss_pred eCC-----CeEEEeeCCC
Q 041325 376 SSD-----NTIRIWRRSS 388 (450)
Q Consensus 376 ~~d-----g~v~iwd~~~ 388 (450)
+.+ ..+..||..+
T Consensus 454 G~~~~~~~~~ve~Yd~~~ 471 (480)
T PHA02790 454 GFYRGSYIDTIEVYNNRT 471 (480)
T ss_pred CcCCCcccceEEEEECCC
Confidence 754 3466777764
No 412
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.51 E-value=0.18 Score=28.74 Aligned_cols=31 Identities=13% Similarity=0.145 Sum_probs=25.9
Q ss_pred cceEEEEEcCCC---CEEEEeeCCCcEEEEEcCC
Q 041325 305 SAVTALALSTDG---TVLYSGACDRSILVWERDQ 335 (450)
Q Consensus 305 ~~i~~l~~~~~~---~~l~~g~~dg~i~vwd~~~ 335 (450)
+.+.++.|+|+. ++|+..-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 368899999843 5888888889999999995
No 413
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=94.48 E-value=0.23 Score=28.32 Aligned_cols=31 Identities=23% Similarity=0.257 Sum_probs=26.3
Q ss_pred CceEEEEEccC-C--CEEEEEeCCCcEEEEecCC
Q 041325 211 DTVSALALSSD-G--SLLYSTSWDRTFKIWRTSD 241 (450)
Q Consensus 211 ~~v~~~~~~~~-~--~~l~~~~~dg~i~iwd~~~ 241 (450)
+.|.++.|+|+ + ++|+.+-..|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 36899999984 4 6888888899999999985
No 414
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=94.45 E-value=3.9 Score=37.45 Aligned_cols=122 Identities=16% Similarity=0.247 Sum_probs=84.8
Q ss_pred ceEEEEEccCCCEEEEEeC---CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhh
Q 041325 212 TVSALALSSDGSLLYSTSW---DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAAL 288 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 288 (450)
....++++++++.+..+.. ++++.+.|..+++.+.... ....+ ..+++.|.+...+++-..++.|.+.|......
T Consensus 117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~-vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v 194 (381)
T COG3391 117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP-VGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSV 194 (381)
T ss_pred CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe-cCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcce
Confidence 4567899999987777655 6899999999999888855 22234 88999997765666667899999999765441
Q ss_pred hccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC---CcEEEEEcCCCcee
Q 041325 289 QVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD---RSILVWERDQGNYI 339 (450)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d---g~i~vwd~~~~~~~ 339 (450)
.. ....... .-......+.++|+|+++.+.... +.+...|..++...
T Consensus 195 ~~---~~~~~~~-~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~ 244 (381)
T COG3391 195 VR---GSVGSLV-GVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVT 244 (381)
T ss_pred ec---ccccccc-ccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEE
Confidence 10 0000011 223345778999999977665544 58999998887644
No 415
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.40 E-value=0.89 Score=42.48 Aligned_cols=119 Identities=11% Similarity=0.161 Sum_probs=69.4
Q ss_pred CCCceEEEEEccC----CCEEEEEeCCCcEEEEecCC-----CeEEE----EeecccccceEEEEEeecCCcEEEEEcCC
Q 041325 209 HVDTVSALALSSD----GSLLYSTSWDRTFKIWRTSD-----FRCLE----SVKNAHDDAINAIVVSKSNDGFVYTGSAD 275 (450)
Q Consensus 209 ~~~~v~~~~~~~~----~~~l~~~~~dg~i~iwd~~~-----~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 275 (450)
.-..|..+.|.|- ...+++......|.+|.+.- .+.+. .+.....---..+.|+|... .|++-...
T Consensus 55 qFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~-iL~VLT~~ 133 (671)
T PF15390_consen 55 QFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKA-ILTVLTAR 133 (671)
T ss_pred ccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCc-eEEEEecC
Confidence 3346889999883 33566667788999998752 22222 22212222345678998444 55444443
Q ss_pred CcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC-CCcEEEEEcCC
Q 041325 276 TKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC-DRSILVWERDQ 335 (450)
Q Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~-dg~i~vwd~~~ 335 (450)
..=.+++++.... .....+ ...+-|.|.+|.+||+.|+++-. .=.-++||-..
T Consensus 134 dvSV~~sV~~d~s------rVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 134 DVSVLPSVHCDSS------RVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred ceeEeeeeeeCCc------eEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 3334555543321 112222 35678999999999998876543 33567887543
No 416
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.38 E-value=2.3 Score=34.53 Aligned_cols=156 Identities=19% Similarity=0.249 Sum_probs=84.9
Q ss_pred eEEEEEeC-CeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeec
Q 041325 130 VKSLVVLG-DKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVH 208 (450)
Q Consensus 130 v~~l~~~~-~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (450)
...++-.+ |.|+.+...+.|.+|++..... ..+..++
T Consensus 20 P~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~--------------~~~~~F~---------------------------- 57 (215)
T PF14761_consen 20 PTAVCCGGPDALFVAASGCKVEVYDLEQEEC--------------PLLCTFS---------------------------- 57 (215)
T ss_pred cceeeccCCceEEEEcCCCEEEEEEcccCCC--------------ceeEEEc----------------------------
Confidence 34444445 6666667778899999984422 2223332
Q ss_pred CCCceEEEEEccCCCEEEEEeCC---C---cEEEE---ecC----C-------------------CeEEEEeecccccce
Q 041325 209 HVDTVSALALSSDGSLLYSTSWD---R---TFKIW---RTS----D-------------------FRCLESVKNAHDDAI 256 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~~~d---g---~i~iw---d~~----~-------------------~~~~~~~~~~~~~~v 256 (450)
--+.|..+.++..|+++++--.+ . .+|+| +.. . +..+..+..+...++
T Consensus 58 Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p 137 (215)
T PF14761_consen 58 TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPP 137 (215)
T ss_pred chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCC
Confidence 22478888888888888886432 2 45664 211 0 111222222345678
Q ss_pred EEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccc---hhhhhHhhc--ccceEEEEEcCCCCEEEEeeCCCcEEEE
Q 041325 257 NAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKH---SLVQTLEKH--KSAVTALALSTDGTVLYSGACDRSILVW 331 (450)
Q Consensus 257 ~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~~~~~~~~--~~~i~~l~~~~~~~~l~~g~~dg~i~vw 331 (450)
.+++..|..+ -|+.|+. +.+.+|.+....... ... .....+..| +-.+..+++. +.++|..+ +-.++++
T Consensus 138 ~ciaCC~~tG-~LlVg~~-~~l~lf~l~~~~~~~-~~~~~lDFe~~l~~~~~~~~p~~v~ic--~~yiA~~s-~~ev~Vl 211 (215)
T PF14761_consen 138 LCIACCPVTG-NLLVGCG-NKLVLFTLKYQTIQS-EKFSFLDFERSLIDHIDNFKPTQVAIC--EGYIAVMS-DLEVLVL 211 (215)
T ss_pred CEEEecCCCC-CEEEEcC-CEEEEEEEEEEEEec-ccccEEechhhhhheecCceEEEEEEE--eeEEEEec-CCEEEEE
Confidence 8889888555 4555554 578899876544210 000 000111111 1224556664 56777765 5567666
Q ss_pred Ec
Q 041325 332 ER 333 (450)
Q Consensus 332 d~ 333 (450)
.+
T Consensus 212 kl 213 (215)
T PF14761_consen 212 KL 213 (215)
T ss_pred EE
Confidence 54
No 417
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.30 E-value=2.9 Score=35.40 Aligned_cols=49 Identities=16% Similarity=0.285 Sum_probs=35.5
Q ss_pred EEccCCCEEEEEeC-----CCcEEEEecCCC-eEEEEeecccccceEEEEEeecCC
Q 041325 217 ALSSDGSLLYSTSW-----DRTFKIWRTSDF-RCLESVKNAHDDAINAIVVSKSND 266 (450)
Q Consensus 217 ~~~~~~~~l~~~~~-----dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~ 266 (450)
.|++||.+|+..-. .|.|-|||.+.+ +.+.++. .|.-....+.+.+++.
T Consensus 120 vfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~-t~GiGpHev~lm~DGr 174 (366)
T COG3490 120 VFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFS-THGIGPHEVTLMADGR 174 (366)
T ss_pred ccCCCCcEEEeecCCCCCCCceEEEEecccccceecccc-cCCcCcceeEEecCCc
Confidence 49999999988654 378999999753 3445555 5666677888887555
No 418
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.13 E-value=2.5 Score=33.99 Aligned_cols=178 Identities=15% Similarity=0.153 Sum_probs=88.3
Q ss_pred eeeeEEeecCCCcc--eEEEEE-eCCEEEEeeCC--CcEEEecCCCCCceeeeecCCCCcceeE---EecCCCceEEEEE
Q 041325 64 QCSATLKVKGNSSY--IPSLAI-AGKLLYGGSSN--GEIRAWNRDPNNYVNITSTDVGDHANVV---ATGNGDAVKSLVV 135 (450)
Q Consensus 64 ~~~~~l~~~~h~~~--v~~~~~-d~~~l~tgs~d--g~v~vw~~~~~~~~~~~~~~~~~~~~~~---~~~h~~~v~~l~~ 135 (450)
+.+++. .|... -..+.+ +|.++.+.+.- ..|++||+.+++......... ..+. ...-.+.++.+.|
T Consensus 35 evi~~y---phDs~sfTQGL~~~~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~---~~~FgEGit~~gd~~y~LTw 108 (262)
T COG3823 35 EVIRTY---PHDSTSFTQGLEYLDGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAP---DTVFGEGITKLGDYFYQLTW 108 (262)
T ss_pred EEEEec---cCchhhhhcceeeeCCEEEEeccccccceeEEEeccCceEEEEeecCC---ccccccceeeccceEEEEEe
Confidence 344444 35443 334555 67777776654 469999999988765533221 0000 0111223333333
Q ss_pred eCCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeee---------
Q 041325 136 LGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTW--------- 206 (450)
Q Consensus 136 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 206 (450)
.+|.-..+|.++- +++..++...+.+..+....+.+-........+
T Consensus 109 ---------~egvaf~~d~~t~----------------~~lg~~~y~GeGWgLt~d~~~LimsdGsatL~frdP~tfa~~ 163 (262)
T COG3823 109 ---------KEGVAFKYDADTL----------------EELGRFSYEGEGWGLTSDDKNLIMSDGSATLQFRDPKTFAEL 163 (262)
T ss_pred ---------ccceeEEEChHHh----------------hhhcccccCCcceeeecCCcceEeeCCceEEEecCHHHhhhc
Confidence 3677777777766 455555555555554444333211111100000
Q ss_pred -----ecCC---CceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEee-----------cccccceEEEEEeecCCc
Q 041325 207 -----VHHV---DTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVK-----------NAHDDAINAIVVSKSNDG 267 (450)
Q Consensus 207 -----~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~v~~~~~~~~~~~ 267 (450)
.... ..++.+.|- +|...+-.=.+..|...|.++|+.+..+. ..+..-.+.|++.|..+.
T Consensus 164 ~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r 242 (262)
T COG3823 164 DTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDR 242 (262)
T ss_pred ceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCe
Confidence 0011 112223332 34444444444555556666676665543 234456788899887776
Q ss_pred EEEEEc
Q 041325 268 FVYTGS 273 (450)
Q Consensus 268 ~l~~~~ 273 (450)
++++|-
T Consensus 243 ~~iTGK 248 (262)
T COG3823 243 FLITGK 248 (262)
T ss_pred EEEecC
Confidence 777763
No 419
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=94.12 E-value=2.9 Score=36.06 Aligned_cols=139 Identities=14% Similarity=0.229 Sum_probs=78.0
Q ss_pred CCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEee------CCCcEEEEEcCCCceeeeCCCCCCc
Q 041325 275 DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA------CDRSILVWERDQGNYIVDGDDDSGH 348 (450)
Q Consensus 275 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~------~dg~i~vwd~~~~~~~~~~~~~~~~ 348 (450)
-..|++||....+.. .. -.+-.+.|+.|.|..+.++++.|. ....+..||+.+.....
T Consensus 15 C~~lC~yd~~~~qW~------~~--g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~-------- 78 (281)
T PF12768_consen 15 CPGLCLYDTDNSQWS------SP--GNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSS-------- 78 (281)
T ss_pred CCEEEEEECCCCEee------cC--CCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeee--------
Confidence 456899998765521 11 122567899999986767777764 35578889988765320
Q ss_pred eeeeccc-cCCccceEEEEEe---CC-eEEEEe-CCCe--EEEeeCCCCccccCCCceeEEE-ecCCCcceEEEEEEec-
Q 041325 349 MVLKGAL-RGHTKAILCLAVV---SN-LLFSGS-SDNT--IRIWRRSSSVTDHQKGYSCLAV-LEGHRRPVKCLTAVVD- 418 (450)
Q Consensus 349 ~~~~~~~-~~~~~~v~~~~~~---~~-~l~s~~-~dg~--v~iwd~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~- 418 (450)
..... ..-.++|..+.+. .. +.++|. .+|. |..||=. .+..+.. .......|..+.+.+-
T Consensus 79 --~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs--------~W~~i~~~~~~~~t~I~~l~~~~l~ 148 (281)
T PF12768_consen 79 --LGGGSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGS--------SWSSIGSDILGSGTTIRGLQVLPLN 148 (281)
T ss_pred --cCCcccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCC--------ceEeccccccCCCCEEEEEEEEecc
Confidence 00001 1224677777774 33 444443 3444 5556533 2444443 2333567788877776
Q ss_pred CCCCCCCCCCCCceEEEEEcc
Q 041325 419 SDYSNRNSDHSSTSFLVYSGS 439 (450)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~s~~ 439 (450)
.........++.+..+|++|.
T Consensus 149 ~~~~~~~~~~~~~~~Llv~G~ 169 (281)
T PF12768_consen 149 SSSHDNSSLFDSDQVLLVTGS 169 (281)
T ss_pred ccccccccccCCCcEEEEEee
Confidence 322233334455556777766
No 420
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.05 E-value=3.4 Score=35.25 Aligned_cols=145 Identities=12% Similarity=0.013 Sum_probs=78.8
Q ss_pred ceEEEEEeecCCcEEEEEc--CCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEE
Q 041325 255 AINAIVVSKSNDGFVYTGS--ADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWE 332 (450)
Q Consensus 255 ~v~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd 332 (450)
.+.+.++++++..+.++.. ....++++...... .... ....+..-.|++++...+....+...+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~----------~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~ 93 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV----------RPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVR 93 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc----------eeec-cCCccccccccCCCCEEEEEcCCCceEEEE
Confidence 6888899987665545442 33445555432211 1111 233678889999988777777677777764
Q ss_pred -cCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eE---EEEeCCCeEEEeeCCCCccc-cCCCceeEEEecC
Q 041325 333 -RDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LL---FSGSSDNTIRIWRRSSSVTD-HQKGYSCLAVLEG 405 (450)
Q Consensus 333 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l---~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~ 405 (450)
..+++.. . ..-....-...|..+.++++ .+ +....++.|.+--+...... ...-.........
T Consensus 94 ~~~~g~~~---------~-~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~ 163 (253)
T PF10647_consen 94 DSASGTGE---------P-VEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPP 163 (253)
T ss_pred ecCCCcce---------e-EEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccc
Confidence 2332211 0 00111111128899999865 33 33345677877765532111 0111122223333
Q ss_pred CCcceEEEEEEecCC
Q 041325 406 HRRPVKCLTAVVDSD 420 (450)
Q Consensus 406 h~~~v~~l~~~~~~~ 420 (450)
....++.+.|.++..
T Consensus 164 ~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 164 LLSDVTDVAWSDDST 178 (253)
T ss_pred ccCcceeeeecCCCE
Confidence 456899999999988
No 421
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=93.88 E-value=7.9 Score=38.90 Aligned_cols=123 Identities=10% Similarity=0.049 Sum_probs=69.3
Q ss_pred CCEEEEEeCCCcEEEEecCCCeEEEEeeccccc-------ceEEEEEeec---------------CCcEEEEEcCCCcEE
Q 041325 222 GSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDD-------AINAIVVSKS---------------NDGFVYTGSADTKIK 279 (450)
Q Consensus 222 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-------~v~~~~~~~~---------------~~~~l~~~~~dg~i~ 279 (450)
+..++.++.++.|.-.|..+|+.+-++...... ....+.+... ..+.++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 556777788889999999999988877622111 0122333211 233788888999999
Q ss_pred EEeCcchhhhcccc--ch--hhhhHhhcccceEEEEEcC--CCCEEEEeeC----------CCcEEEEEcCCCceeeeCC
Q 041325 280 VWKKLRAALQVNKK--HS--LVQTLEKHKSAVTALALST--DGTVLYSGAC----------DRSILVWERDQGNYIVDGD 343 (450)
Q Consensus 280 vwd~~~~~~~~~~~--~~--~~~~~~~~~~~i~~l~~~~--~~~~l~~g~~----------dg~i~vwd~~~~~~~~~~~ 343 (450)
-.|.++++...... .. ....+......-..+.-.| .+..+++|+. +|.|+-+|.++|+.+....
T Consensus 274 ALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~ 353 (764)
T TIGR03074 274 ALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWD 353 (764)
T ss_pred EEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEe
Confidence 99998887211000 00 0000000000001111112 2345666643 6889999999999887655
Q ss_pred C
Q 041325 344 D 344 (450)
Q Consensus 344 ~ 344 (450)
.
T Consensus 354 ~ 354 (764)
T TIGR03074 354 P 354 (764)
T ss_pred c
Confidence 3
No 422
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=93.73 E-value=3.9 Score=34.85 Aligned_cols=281 Identities=11% Similarity=0.137 Sum_probs=150.9
Q ss_pred CcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEc
Q 041325 75 SSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKI 154 (450)
Q Consensus 75 ~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~ 154 (450)
.+-+..+.+.+++...+..+.-++|.|+.+......... ..-.+--.++..+++....+..|.-+.+.|+
T Consensus 86 ~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~----------lnt~gyaygv~vsGn~aYVadlddgfLivdv 155 (370)
T COG5276 86 RDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGF----------LNTDGYAYGVYVSGNYAYVADLDDGFLIVDV 155 (370)
T ss_pred hhhhheeEecccEEEEEcCCCceEEEeccCCCCcceecc----------ccCCceEEEEEecCCEEEEeeccCcEEEEEC
Confidence 455666777889999998888999999987553222111 1112455777788888777776667888898
Q ss_pred CCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcE
Q 041325 155 DNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTF 234 (450)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 234 (450)
.+.+...... ++.........++.+ |++-..+..|+-+
T Consensus 156 sdpssP~lag----------------------------------------rya~~~~d~~~v~IS--Gn~AYvA~~d~GL 193 (370)
T COG5276 156 SDPSSPQLAG----------------------------------------RYALPGGDTHDVAIS--GNYAYVAWRDGGL 193 (370)
T ss_pred CCCCCceeee----------------------------------------eeccCCCCceeEEEe--cCeEEEEEeCCCe
Confidence 8764211100 011112222445555 7777788889999
Q ss_pred EEEecCCCeEEEEeecc-cccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhh-cccceEEEEE
Q 041325 235 KIWRTSDFRCLESVKNA-HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEK-HKSAVTALAL 312 (450)
Q Consensus 235 ~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~ 312 (450)
.+-|+.....-..+..- ....+.++..++ +...++-...| +.+-|...... .......+. ....++.+..
T Consensus 194 ~ivDVSnp~sPvli~~~n~g~g~~sv~vsd--nr~y~vvy~eg-vlivd~s~~ss-----p~~~gsyet~~p~~~s~v~V 265 (370)
T COG5276 194 TIVDVSNPHSPVLIGSYNTGPGTYSVSVSD--NRAYLVVYDEG-VLIVDVSGPSS-----PTVFGSYETSNPVSISTVPV 265 (370)
T ss_pred EEEEccCCCCCeEEEEEecCCceEEEEecC--CeeEEEEcccc-eEEEecCCCCC-----ceEeeccccCCcccccceec
Confidence 99999765432222211 223677777763 33333333333 56666544330 011111110 1112222233
Q ss_pred cCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCCCccc
Q 041325 313 STDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTD 392 (450)
Q Consensus 313 ~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~ 392 (450)
.+++......+.-+.+-|..+..- ..+...+......-..+...++++..+..+ ...+-+....
T Consensus 266 --s~~~~Yvadga~gl~~idisnp~s----------pfl~ss~~t~g~~a~gi~ay~~y~yiadkn-~g~vV~~s~~--- 329 (370)
T COG5276 266 --SGEYAYVADGAKGLPIIDISNPPS----------PFLSSSLDTAGYQAAGIRAYGNYNYIADKN-TGAVVDASPP--- 329 (370)
T ss_pred --ccceeeeeccccCceeEeccCCCC----------CchhccccCCCccccceEEecCeeEeccCC-ceEEEeCCCh---
Confidence 466777776677777777764321 111122222222334555666666666555 3344444432
Q ss_pred cCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 393 HQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 393 ~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+......+....+.+.+.+-+.+ .+.+...++-+.||+.
T Consensus 330 -----s~m~~~~g~~ti~~s~~v~~~~q-------------~~y~~d~~~gl~i~~~ 368 (370)
T COG5276 330 -----SMMDKRPGRPTIGQSCDVSVDTQ-------------IIYSTDYNGGLSIIEY 368 (370)
T ss_pred -----hhcccccCcceEeeecceEEEee-------------EEEEeecCCCEEEEEe
Confidence 11111222223334444444555 7888888999999985
No 423
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=93.66 E-value=0.41 Score=39.66 Aligned_cols=81 Identities=15% Similarity=0.134 Sum_probs=52.8
Q ss_pred cceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcce--eEEecCCCceEEEEEeCCe--EEEEeCCCeEEE
Q 041325 76 SYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHAN--VVATGNGDAVKSLVVLGDK--LFSAHQDHKIRV 151 (450)
Q Consensus 76 ~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~--~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~i 151 (450)
.++..+..++++|++-+.+|.+++||+.+++.........+.... ..-......|..+....++ +++ -.+|....
T Consensus 13 s~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~-lsng~~y~ 91 (219)
T PF07569_consen 13 SPVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVT-LSNGDSYS 91 (219)
T ss_pred CceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEE-EeCCCEEE
Confidence 356667778999999999999999999998754432110000000 0000455688888888766 444 44688899
Q ss_pred EEcCCC
Q 041325 152 WKIDNN 157 (450)
Q Consensus 152 w~~~~~ 157 (450)
|+.+-+
T Consensus 92 y~~~L~ 97 (219)
T PF07569_consen 92 YSPDLG 97 (219)
T ss_pred eccccc
Confidence 988765
No 424
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.24 E-value=4 Score=33.51 Aligned_cols=47 Identities=15% Similarity=0.177 Sum_probs=41.1
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEe
Q 041325 215 ALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVS 262 (450)
Q Consensus 215 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 262 (450)
.+++..+|++.++.-..++|...|..+|+.+.++. -....|++++|-
T Consensus 216 Gm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eik-lPt~qitsccFg 262 (310)
T KOG4499|consen 216 GMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIK-LPTPQITSCCFG 262 (310)
T ss_pred cceEccCCcEEEEEecCcEEEEECCCCCcEEEEEE-cCCCceEEEEec
Confidence 45567789999999999999999999999999998 457889999997
No 425
>PRK13684 Ycf48-like protein; Provisional
Probab=93.06 E-value=6.3 Score=35.29 Aligned_cols=158 Identities=10% Similarity=-0.000 Sum_probs=80.4
Q ss_pred cccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEE
Q 041325 252 HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVW 331 (450)
Q Consensus 252 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vw 331 (450)
....+..+.+.++ +.++..+..|.+..- .+.+. ..+..+. ......++.+.+.++++.+++| ..|.+++=
T Consensus 171 ~~g~~~~i~~~~~--g~~v~~g~~G~i~~s-~~~gg----~tW~~~~--~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~ 240 (334)
T PRK13684 171 AAGVVRNLRRSPD--GKYVAVSSRGNFYST-WEPGQ----TAWTPHQ--RNSSRRLQSMGFQPDGNLWMLA-RGGQIRFN 240 (334)
T ss_pred CcceEEEEEECCC--CeEEEEeCCceEEEE-cCCCC----CeEEEee--CCCcccceeeeEcCCCCEEEEe-cCCEEEEc
Confidence 3557888888863 344455555655432 11111 1122221 1244678999999999877765 45765432
Q ss_pred EcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcce
Q 041325 332 ERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPV 410 (450)
Q Consensus 332 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v 410 (450)
....+..-. ............+.++.+.++ .++.++.+|.+.. ....+ +.++.+.....-....
T Consensus 241 s~d~G~sW~---------~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d~G-----~tW~~~~~~~~~~~~~ 305 (334)
T PRK13684 241 DPDDLESWS---------KPIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLLV-SKDGG-----KTWEKDPVGEEVPSNF 305 (334)
T ss_pred cCCCCCccc---------cccCCccccccceeeEEEcCCCCEEEEcCCCeEEE-eCCCC-----CCCeECCcCCCCCcce
Confidence 233332110 000000111234677777643 5666777786653 33332 2233322212223457
Q ss_pred EEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 411 KCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 411 ~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
+.+.|..++. . +..+..|.|.-|+
T Consensus 306 ~~~~~~~~~~-------------~-~~~G~~G~il~~~ 329 (334)
T PRK13684 306 YKIVFLDPEK-------------G-FVLGQRGVLLRYV 329 (334)
T ss_pred EEEEEeCCCc-------------e-EEECCCceEEEec
Confidence 7888877766 4 4456778776654
No 426
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.60 E-value=3.1 Score=38.42 Aligned_cols=76 Identities=13% Similarity=0.087 Sum_probs=52.6
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEe---------cCCCeEEEEe----------ecccccceEEEEEeecC--CcEEE
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWR---------TSDFRCLESV----------KNAHDDAINAIVVSKSN--DGFVY 270 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd---------~~~~~~~~~~----------~~~~~~~v~~~~~~~~~--~~~l~ 270 (450)
.|..+..++.|..++..+.+|.+.++= +++++..... .....-.+..++|+|+. +..++
T Consensus 105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL~ 184 (741)
T KOG4460|consen 105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHLV 184 (741)
T ss_pred EEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceEE
Confidence 577888899999999988888776653 2234322111 11122346678899977 67888
Q ss_pred EEcCCCcEEEEeCcchh
Q 041325 271 TGSADTKIKVWKKLRAA 287 (450)
Q Consensus 271 ~~~~dg~i~vwd~~~~~ 287 (450)
.-..|+.||+||+....
T Consensus 185 iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 185 LLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEecCcEEEEEecCCcc
Confidence 88899999999986543
No 427
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.39 E-value=2.2 Score=38.63 Aligned_cols=101 Identities=12% Similarity=0.145 Sum_probs=71.3
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-eEEEEeCCCeE
Q 041325 303 HKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFSGSSDNTI 381 (450)
Q Consensus 303 ~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~v 381 (450)
.+++|.++.|++|.+.|++--.|..|.+++....+. ........+..+..|..+.|..+ -+|-....| +
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~---------~l~~~~~ck~k~~~IlGF~W~~s~e~A~i~~~G-~ 134 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNS---------QLEYTQECKTKNANILGFCWTSSTEIAFITDQG-I 134 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCch---------hhHHHHHhccCcceeEEEEEecCeeEEEEecCC-e
Confidence 456999999999999999999999999998843221 11223344455667899999865 455554444 6
Q ss_pred EEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 382 RIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 382 ~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
.+|..... ...++..+.|.-.|+...|+++..
T Consensus 135 e~y~v~pe-------krslRlVks~~~nvnWy~yc~et~ 166 (657)
T KOG2377|consen 135 EFYQVLPE-------KRSLRLVKSHNLNVNWYMYCPETA 166 (657)
T ss_pred EEEEEchh-------hhhhhhhhhcccCccEEEEccccc
Confidence 77766542 234555677888899999998877
No 428
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=92.32 E-value=2.4 Score=38.77 Aligned_cols=82 Identities=16% Similarity=0.099 Sum_probs=53.7
Q ss_pred eecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCC-----------------cE
Q 041325 206 WVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSND-----------------GF 268 (450)
Q Consensus 206 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----------------~~ 268 (450)
+.+....+.+++.+|++++.++...=|+|.++|+.++..++.++.-....+.-+....... .+
T Consensus 303 l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~L 382 (415)
T PF14655_consen 303 LPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFL 382 (415)
T ss_pred eccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEE
Confidence 3445566889999999999998888899999999998877776622222221111111110 13
Q ss_pred EEEEcCCCcEEEEeCcchh
Q 041325 269 VYTGSADTKIKVWKKLRAA 287 (450)
Q Consensus 269 l~~~~~dg~i~vwd~~~~~ 287 (450)
++-+-.-|.|.||+++.+.
T Consensus 383 vIyaprRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 383 VIYAPRRGILEVWSMRQGP 401 (415)
T ss_pred EEEeccCCeEEEEecCCCC
Confidence 4556677889999986544
No 429
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.14 E-value=1.9 Score=44.44 Aligned_cols=100 Identities=12% Similarity=0.197 Sum_probs=55.6
Q ss_pred CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCc-------EEEEEcCCCcEEEEeCcchhhhccc-cchhhhhHh
Q 041325 230 WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDG-------FVYTGSADTKIKVWKKLRAALQVNK-KHSLVQTLE 301 (450)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-------~l~~~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~ 301 (450)
-|+.+.+|+.+++.....+. +....|..|.......+ +++.-+.--.|.++-+...+..... .......+.
T Consensus 97 iDn~L~lWny~~~~e~~~~d-~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYD-GLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred eCCeEEEEEcCCCCcccccc-chhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 47899999999977777776 56667777765533333 2233333345666654332210000 000001112
Q ss_pred hcccceEEEEEcCCCCEEEEeeCCCcEEEEEc
Q 041325 302 KHKSAVTALALSTDGTVLYSGACDRSILVWER 333 (450)
Q Consensus 302 ~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~ 333 (450)
.....|.++....+|+.+++|- || .+|.+
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~-dg--~lyEl 204 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGR-DG--NLYEL 204 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeec-CC--CEEEE
Confidence 2345688888888888777664 55 45554
No 430
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=92.12 E-value=9.6 Score=35.09 Aligned_cols=157 Identities=13% Similarity=0.141 Sum_probs=85.2
Q ss_pred CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe------CCeEEEEeCCCeEEEEEcCCCc
Q 041325 85 GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL------GDKLFSAHQDHKIRVWKIDNNT 158 (450)
Q Consensus 85 ~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~------~~~l~s~~~dg~i~iw~~~~~~ 158 (450)
...|++||.+|.++|++......... ..+.-..-..+|..+..- ++..++.-.-+.+.+|.+....
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~--------~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~ 108 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPE--------DLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVD 108 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCc--------cEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecC
Confidence 46899999999999999855432111 111122334577777653 1123344555677777773221
Q ss_pred eeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc----C-CCEEEEEeCCCc
Q 041325 159 SAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS----D-GSLLYSTSWDRT 233 (450)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~-~~~l~~~~~dg~ 233 (450)
. ... .+....+...-...+ ......+++-| . ..++.+=+.||.
T Consensus 109 g-------~~~----------------------~g~~~~L~~~yeh~l---~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~ 156 (418)
T PF14727_consen 109 G-------TVE----------------------HGNQYQLELIYEHSL---QRTAYNMCCGPFGGVKGRDFICVQSMDGS 156 (418)
T ss_pred C-------Ccc----------------------cCcEEEEEEEEEEec---ccceeEEEEEECCCCCCceEEEEEecCce
Confidence 0 000 000001000000011 11223333333 2 356777899999
Q ss_pred EEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCc
Q 041325 234 FKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKL 284 (450)
Q Consensus 234 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 284 (450)
+.+++-+.......+. .---...+.+.+..+ .+++++.+..+.-|...
T Consensus 157 L~~feqe~~~f~~~lp--~~llPgPl~Y~~~tD-sfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 157 LSFFEQESFAFSRFLP--DFLLPGPLCYCPRTD-SFVTASSSWTLECYKYQ 204 (418)
T ss_pred EEEEeCCcEEEEEEcC--CCCCCcCeEEeecCC-EEEEecCceeEEEecHH
Confidence 9999987655444443 233334567777444 78888888889888753
No 431
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=92.09 E-value=5.6 Score=32.36 Aligned_cols=154 Identities=9% Similarity=0.117 Sum_probs=81.7
Q ss_pred CEEEEEeCCCcEEEEecCC--CeEEEEeecccccceEEEEEeecCCcEEEEEcCCC------cEEEE-eCcchhhhccc-
Q 041325 223 SLLYSTSWDRTFKIWRTSD--FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADT------KIKVW-KKLRAALQVNK- 292 (450)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg------~i~vw-d~~~~~~~~~~- 292 (450)
+.|..+...+.|.+|++.+ .+.+..+. .-+.|..+.++..++ ++++--.+. .+|+| |.+........
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~--Tv~~V~~l~y~~~GD-YlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v 105 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFS--TVGRVLQLVYSEAGD-YLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV 105 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEc--chhheeEEEeccccc-eEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence 4444445678899999883 34555554 568899999998655 776643322 55665 22222100000
Q ss_pred ---------------cch-hh--hhHhhcccceEEEEEcC-CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeec
Q 041325 293 ---------------KHS-LV--QTLEKHKSAVTALALST-DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKG 353 (450)
Q Consensus 293 ---------------~~~-~~--~~~~~~~~~i~~l~~~~-~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 353 (450)
... .+ -++ .....+.+++..| .|+ |+.|+ ++.+.+|.+.....- ...........
T Consensus 106 ~vRiaG~~v~~~~~~~~~~qleiiEl-Pl~~~p~ciaCC~~tG~-LlVg~-~~~l~lf~l~~~~~~---~~~~~~lDFe~ 179 (215)
T PF14761_consen 106 RVRIAGHRVTPSFNESSKDQLEIIEL-PLSEPPLCIACCPVTGN-LLVGC-GNKLVLFTLKYQTIQ---SEKFSFLDFER 179 (215)
T ss_pred EEEEcccccccCCCCccccceEEEEe-cCCCCCCEEEecCCCCC-EEEEc-CCEEEEEEEEEEEEe---cccccEEechh
Confidence 000 00 001 1234677888888 455 44454 577999988754321 00000011111
Q ss_pred cc-cCCcc-ceEEEEEeCCeEEEEeCCCeEEEeeC
Q 041325 354 AL-RGHTK-AILCLAVVSNLLFSGSSDNTIRIWRR 386 (450)
Q Consensus 354 ~~-~~~~~-~v~~~~~~~~~l~s~~~dg~v~iwd~ 386 (450)
.+ .-|.+ ....+++.++++|..+.. .+++..+
T Consensus 180 ~l~~~~~~~~p~~v~ic~~yiA~~s~~-ev~Vlkl 213 (215)
T PF14761_consen 180 SLIDHIDNFKPTQVAICEGYIAVMSDL-EVLVLKL 213 (215)
T ss_pred hhhheecCceEEEEEEEeeEEEEecCC-EEEEEEE
Confidence 12 12222 357788889999887754 5666654
No 432
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=91.95 E-value=1.6 Score=36.23 Aligned_cols=80 Identities=13% Similarity=0.281 Sum_probs=54.1
Q ss_pred cceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHh-------hcccceEEEEEcCCCCEEEEeeCCC
Q 041325 254 DAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLE-------KHKSAVTALALSTDGTVLYSGACDR 326 (450)
Q Consensus 254 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-------~~~~~i~~l~~~~~~~~l~~g~~dg 326 (450)
.++..+.. .+.++++-+.+|.+++||+.+.+..... ......+. .....|..+.++.+|.-|++-+ +|
T Consensus 13 s~~~~l~~---~~~~Ll~iT~~G~l~vWnl~~~k~~~~~-~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng 87 (219)
T PF07569_consen 13 SPVSFLEC---NGSYLLAITSSGLLYVWNLKKGKAVLPP-VSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NG 87 (219)
T ss_pred CceEEEEe---CCCEEEEEeCCCeEEEEECCCCeeccCC-ccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CC
Confidence 34444444 4558999999999999999987754322 11112222 3557789999998888776654 68
Q ss_pred cEEEEEcCCCce
Q 041325 327 SILVWERDQGNY 338 (450)
Q Consensus 327 ~i~vwd~~~~~~ 338 (450)
..+.|+..-+..
T Consensus 88 ~~y~y~~~L~~W 99 (219)
T PF07569_consen 88 DSYSYSPDLGCW 99 (219)
T ss_pred CEEEecccccee
Confidence 899999876543
No 433
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=91.88 E-value=11 Score=35.11 Aligned_cols=158 Identities=9% Similarity=0.090 Sum_probs=74.7
Q ss_pred EEEEccCCCEEEEEeCCC-----------cEEEEecCCCeEE--EEeecccccc-eEEEEEeecCCcEEEEEcCC---Cc
Q 041325 215 ALALSSDGSLLYSTSWDR-----------TFKIWRTSDFRCL--ESVKNAHDDA-INAIVVSKSNDGFVYTGSAD---TK 277 (450)
Q Consensus 215 ~~~~~~~~~~l~~~~~dg-----------~i~iwd~~~~~~~--~~~~~~~~~~-v~~~~~~~~~~~~l~~~~~d---g~ 277 (450)
.+.|.++++.|+-...+. .|..|++.+...- ..+....... ...+..++++..+++..... ..
T Consensus 174 ~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~ 253 (414)
T PF02897_consen 174 SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESE 253 (414)
T ss_dssp EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEE
T ss_pred eEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCe
Confidence 389999988776654332 3778887765322 3333222233 56777777555344444333 35
Q ss_pred EEEEeCcchhhhccccchhhhhHhhcccce-EEEEEcCCCCEEEEee---CCCcEEEEEcCCCceeeeCCCCCCceeeec
Q 041325 278 IKVWKKLRAALQVNKKHSLVQTLEKHKSAV-TALALSTDGTVLYSGA---CDRSILVWERDQGNYIVDGDDDSGHMVLKG 353 (450)
Q Consensus 278 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i-~~l~~~~~~~~l~~g~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 353 (450)
+.+.++.... ........+......+ ..+... ++.+++... .++.|...++...... ....
T Consensus 254 v~~~d~~~~~----~~~~~~~~l~~~~~~~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~----------~~~~ 318 (414)
T PF02897_consen 254 VYLLDLDDGG----SPDAKPKLLSPREDGVEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPA----------EWWT 318 (414)
T ss_dssp EEEEECCCTT----TSS-SEEEEEESSSS-EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGG----------GEEE
T ss_pred EEEEeccccC----CCcCCcEEEeCCCCceEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccc----------ccee
Confidence 7777776531 0000111122222223 223332 333433332 2456766676654310 0111
Q ss_pred cccCCcc--ceEEEEEeCCeEE-EEeCCC--eEEEeeCC
Q 041325 354 ALRGHTK--AILCLAVVSNLLF-SGSSDN--TIRIWRRS 387 (450)
Q Consensus 354 ~~~~~~~--~v~~~~~~~~~l~-s~~~dg--~v~iwd~~ 387 (450)
.+..+.. .+..+...+++|+ ....++ .|+++++.
T Consensus 319 ~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 319 VLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred EEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence 3333433 5667777777444 444454 47888888
No 434
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.19 E-value=11 Score=34.51 Aligned_cols=105 Identities=10% Similarity=0.088 Sum_probs=70.8
Q ss_pred CCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeec---ccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc
Q 041325 209 HVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKN---AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR 285 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 285 (450)
..++|.++.|++|.+.+|.--.+..|.+++....+....... .....|....|.. ..-++.-...| +-+|....
T Consensus 65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~--s~e~A~i~~~G-~e~y~v~p 141 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTS--STEIAFITDQG-IEFYQVLP 141 (657)
T ss_pred CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEec--CeeEEEEecCC-eEEEEEch
Confidence 455899999999999999999999999999854333322221 2234578888884 33444444444 67776543
Q ss_pred hhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEee
Q 041325 286 AALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA 323 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~ 323 (450)
.+ ..++..+.++..|.--.|.++.+.++-++
T Consensus 142 ek-------rslRlVks~~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 142 EK-------RSLRLVKSHNLNVNWYMYCPETAVILLST 172 (657)
T ss_pred hh-------hhhhhhhhcccCccEEEEccccceEeeec
Confidence 32 24556667888888899999877654443
No 435
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=91.03 E-value=12 Score=34.19 Aligned_cols=193 Identities=9% Similarity=0.091 Sum_probs=77.3
Q ss_pred CCCEEEEEe-CCCcEEEEecCC----CeEEEEeecc--cc----cceEEEEEeecCCcEEEEEc------CCCcEEEEeC
Q 041325 221 DGSLLYSTS-WDRTFKIWRTSD----FRCLESVKNA--HD----DAINAIVVSKSNDGFVYTGS------ADTKIKVWKK 283 (450)
Q Consensus 221 ~~~~l~~~~-~dg~i~iwd~~~----~~~~~~~~~~--~~----~~v~~~~~~~~~~~~l~~~~------~dg~i~vwd~ 283 (450)
+.++|+..+ ..++|.|.|+.+ .+..+.+... +. .....+...| +..+++++- .-|.+.++|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp-~G~imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLP-DGRIMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-S-S--EEEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecC-CccEEEEeccCCCCCCCCcEEEEcC
Confidence 456677666 788999999873 3444444410 11 2223333344 222555432 2245666665
Q ss_pred cchhhhccccchhhhhHhh---cccceEEEEEcCCCCEEEEee--------------------CCCcEEEEEcCCCceee
Q 041325 284 LRAALQVNKKHSLVQTLEK---HKSAVTALALSTDGTVLYSGA--------------------CDRSILVWERDQGNYIV 340 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~---~~~~i~~l~~~~~~~~l~~g~--------------------~dg~i~vwd~~~~~~~~ 340 (450)
++.+ ....... ...--..+.|.|..+.+++.. ...++++||+.+.+.+.
T Consensus 165 ~tf~--------v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q 236 (461)
T PF05694_consen 165 ETFE--------VKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQ 236 (461)
T ss_dssp TT----------EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEE
T ss_pred cccc--------ccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEee
Confidence 4332 1111111 112235566777767776653 24679999999988663
Q ss_pred eCCCCCCceeeeccccCCccceEEEEEe--CC----eEEEEeCCCeEEEe-eCCCCccccCCCceeEEEecC--------
Q 041325 341 DGDDDSGHMVLKGALRGHTKAILCLAVV--SN----LLFSGSSDNTIRIW-RRSSSVTDHQKGYSCLAVLEG-------- 405 (450)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~----~l~s~~~dg~v~iw-d~~~~~~~~~~~~~~~~~~~~-------- 405 (450)
.++-.. .......+.|. ++ ++-++ -.+.|..| ....+.- ..+.+..+..
T Consensus 237 ~idLg~-----------~g~~pLEvRflH~P~~~~gFvg~a-Lss~i~~~~k~~~g~W----~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 237 TIDLGE-----------EGQMPLEVRFLHDPDANYGFVGCA-LSSSIWRFYKDDDGEW----AAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp EEES-T-----------TEEEEEEEEE-SSTT--EEEEEEE---EEEEEEEE-ETTEE----EEEEEEEE--EE--SS--
T ss_pred EEecCC-----------CCCceEEEEecCCCCccceEEEEe-ccceEEEEEEcCCCCe----eeeEEEECCCcccCcccc
Confidence 332221 11223444443 22 22222 23333333 3232210 0111111111
Q ss_pred ---------CCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 406 ---------HRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 406 ---------h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
-..-|+.|..|.|.++ +.+++=.+|.|+.|||.
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDrf------------LYvs~W~~GdvrqYDIS 342 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDRF------------LYVSNWLHGDVRQYDIS 342 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS-E------------EEEEETTTTEEEEEE-S
T ss_pred cccccccccCCCceEeEEEccCCCE------------EEEEcccCCcEEEEecC
Confidence 1245789999999983 45556689999999973
No 436
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=90.77 E-value=11 Score=33.08 Aligned_cols=157 Identities=13% Similarity=0.179 Sum_probs=79.2
Q ss_pred CCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhh
Q 041325 209 HVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAAL 288 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 288 (450)
-.+.+..+.-+++|++++++.......-||.-...- ..........|..|.|.|+ +.|......|.|+.=+.....
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w-~~~~r~~~~riq~~gf~~~--~~lw~~~~Gg~~~~s~~~~~~- 218 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTW-QPHNRNSSRRIQSMGFSPD--GNLWMLARGGQIQFSDDPDDG- 218 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS--EEEE--SSS-EEEEEE-TT--S-EEEEETTTEEEEEE-TTEE-
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccc-eEEccCccceehhceecCC--CCEEEEeCCcEEEEccCCCCc-
Confidence 346788888899999988887666667787643211 1222235689999999974 344445588888887721111
Q ss_pred hccccch-hhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEE
Q 041325 289 QVNKKHS-LVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV 367 (450)
Q Consensus 289 ~~~~~~~-~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 367 (450)
..+. .........-.+..++|.+++...++|+ .|.+. .....|+- .........-......+.|
T Consensus 219 ---~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~-~S~DgGkt----------W~~~~~~~~~~~n~~~i~f 283 (302)
T PF14870_consen 219 ---ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLL-VSTDGGKT----------WQKDRVGENVPSNLYRIVF 283 (302)
T ss_dssp ---EEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EE-EESSTTSS-----------EE-GGGTTSSS---EEEE
T ss_pred ---cccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEE-EeCCCCcc----------ceECccccCCCCceEEEEE
Confidence 1111 1112222334588999998877777665 55443 34444431 1112222333456778888
Q ss_pred e-CCeEEEEeCCCeEEEe
Q 041325 368 V-SNLLFSGSSDNTIRIW 384 (450)
Q Consensus 368 ~-~~~l~s~~~dg~v~iw 384 (450)
. ++.-+..+.+|.|.-|
T Consensus 284 ~~~~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 284 VNPDKGFVLGQDGVLLRY 301 (302)
T ss_dssp EETTEEEEE-STTEEEEE
T ss_pred cCCCceEEECCCcEEEEe
Confidence 6 5677777888887654
No 437
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=90.62 E-value=22 Score=36.35 Aligned_cols=173 Identities=16% Similarity=0.169 Sum_probs=93.5
Q ss_pred EEEEecCCCeEEEEeecccc---cceEEEEEeecCCc-EEEEEc-----------CCCcEEEEeCcchhhhccccchhhh
Q 041325 234 FKIWRTSDFRCLESVKNAHD---DAINAIVVSKSNDG-FVYTGS-----------ADTKIKVWKKLRAALQVNKKHSLVQ 298 (450)
Q Consensus 234 i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~-~l~~~~-----------~dg~i~vwd~~~~~~~~~~~~~~~~ 298 (450)
|++.|..+++.+..+..... -.+..+.|+..+.. +++++. .+|.++.|++-... .....+.
T Consensus 855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g----~~lellh 930 (1205)
T KOG1898|consen 855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNG----DKLELLH 930 (1205)
T ss_pred EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecC----ceeeeee
Confidence 66666666666555542222 23455556544443 333332 23456666654433 1111222
Q ss_pred hHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCC
Q 041325 299 TLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSD 378 (450)
Q Consensus 299 ~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~d 378 (450)
... -.+.+ .+..|...++++| ....+++||+...+.+ .+...+.-...|+.+.+....++.|..-
T Consensus 931 ~T~-~~~~v--~Ai~~f~~~~Lag-vG~~l~~YdlG~K~lL-----------Rk~e~k~~p~~Is~iqt~~~RI~VgD~q 995 (1205)
T KOG1898|consen 931 KTE-IPGPV--GAICPFQGRVLAG-VGRFLRLYDLGKKKLL-----------RKCELKFIPNRISSIQTYGARIVVGDIQ 995 (1205)
T ss_pred ccC-CCccc--eEEeccCCEEEEe-cccEEEEeeCChHHHH-----------hhhhhccCceEEEEEeecceEEEEeecc
Confidence 211 12333 4566666666665 4678999999876544 2233333467789999999988888876
Q ss_pred CeEEEeeCCCCccccCCCceeEEEec--CCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEE
Q 041325 379 NTIRIWRRSSSVTDHQKGYSCLAVLE--GHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKI 446 (450)
Q Consensus 379 g~v~iwd~~~~~~~~~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~i 446 (450)
-.|.++..+.. ...+..+- .-...|+++.+...+. ++.|..=|.+.+
T Consensus 996 eSV~~~~y~~~-------~n~l~~fadD~~pR~Vt~~~~lD~~t--------------vagaDrfGNi~~ 1044 (1205)
T KOG1898|consen 996 ESVHFVRYRRE-------DNQLIVFADDPVPRHVTALELLDYDT--------------VAGADRFGNIAV 1044 (1205)
T ss_pred ceEEEEEEecC-------CCeEEEEeCCCccceeeEEEEecCCc--------------eeeccccCcEEE
Confidence 66766554432 12233332 2234566666655543 666665555544
No 438
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.60 E-value=23 Score=37.00 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=24.1
Q ss_pred cCCCCEEEEeeCCCcEEEEEcCCCce
Q 041325 313 STDGTVLYSGACDRSILVWERDQGNY 338 (450)
Q Consensus 313 ~~~~~~l~~g~~dg~i~vwd~~~~~~ 338 (450)
++++..++++..||.+..||...++.
T Consensus 243 ~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 243 SRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccCCceEEEEEecCCEEeeecCCCce
Confidence 78899999999999999999998865
No 439
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.28 E-value=3.3 Score=42.92 Aligned_cols=36 Identities=25% Similarity=0.265 Sum_probs=29.0
Q ss_pred CCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEE
Q 041325 210 VDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCL 245 (450)
Q Consensus 210 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 245 (450)
......++|+|...+++.+...|.|++|-...-+..
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~ 70 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFV 70 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEecccceEEE
Confidence 345677899999999999999999999977644433
No 440
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.16 E-value=4.9 Score=37.11 Aligned_cols=125 Identities=16% Similarity=0.196 Sum_probs=71.9
Q ss_pred EEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCC--------CEEEEeeCCCcEEEEEcCC-Ccee
Q 041325 269 VYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDG--------TVLYSGACDRSILVWERDQ-GNYI 339 (450)
Q Consensus 269 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~--------~~l~~g~~dg~i~vwd~~~-~~~~ 339 (450)
+..|+....++--|++.++ .+..+..+..- -+.|.|+. +.|+ |-.+..|.-.|.+- |..+
T Consensus 483 ~~dg~~~~kLykmDIErGk--------vveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi 551 (776)
T COG5167 483 YLDGGERDKLYKMDIERGK--------VVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKI 551 (776)
T ss_pred EecCCCcccceeeecccce--------eeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCce
Confidence 4556666677777887766 55555555443 46777742 3344 44455565556552 2111
Q ss_pred eeCCCCCCceeeeccccCCccceEEE-EEeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEec
Q 041325 340 VDGDDDSGHMVLKGALRGHTKAILCL-AVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVD 418 (450)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 418 (450)
. .......... ....+. .-...+++.++..|-|++||.-. ......+.+-...|..+..+.+
T Consensus 552 ~--------v~esKdY~tK-n~Fss~~tTesGyIa~as~kGDirLyDRig--------~rAKtalP~lG~aIk~idvta~ 614 (776)
T COG5167 552 K--------VVESKDYKTK-NKFSSGMTTESGYIAAASRKGDIRLYDRIG--------KRAKTALPGLGDAIKHIDVTAN 614 (776)
T ss_pred e--------eeeehhcccc-ccccccccccCceEEEecCCCceeeehhhc--------chhhhcCcccccceeeeEeecC
Confidence 0 0000111111 111222 22245999999999999999653 2344556677788999999999
Q ss_pred CCC
Q 041325 419 SDY 421 (450)
Q Consensus 419 ~~~ 421 (450)
|++
T Consensus 615 Gk~ 617 (776)
T COG5167 615 GKH 617 (776)
T ss_pred CcE
Confidence 993
No 441
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=90.10 E-value=26 Score=36.44 Aligned_cols=184 Identities=16% Similarity=0.243 Sum_probs=97.6
Q ss_pred CCcEEEEecCCCeEEEEeecccccceEEEEEee-----c---CCcEEEEEcC---------CCcEEEEeCcchhhhcc--
Q 041325 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSK-----S---NDGFVYTGSA---------DTKIKVWKKLRAALQVN-- 291 (450)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-----~---~~~~l~~~~~---------dg~i~vwd~~~~~~~~~-- 291 (450)
...|.+.+..+.+.+..+.-....-+.++.... . ...++++|.. -|.++++|+-.---+.+
T Consensus 1003 ~f~i~LisP~sw~vi~~iefq~~E~v~~~k~v~L~~~~t~~~~k~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP 1082 (1366)
T KOG1896|consen 1003 QFSIQLISPESWEVIDKIEFQENEHVLHMKYVILDDEETTKGKKPYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKP 1082 (1366)
T ss_pred cceeEEecCCccccccccccCccceeeEEEEEEEEecccccCCcceEEEEEeecccccccCcccEEEEEEEEecCCCCCC
Confidence 445666666666555444423334444444321 1 1236776643 48899999754110000
Q ss_pred ---ccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcC-CCceeeeCCCCCCceeeeccccCCccceEEEEE
Q 041325 292 ---KKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERD-QGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV 367 (450)
Q Consensus 292 ---~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 367 (450)
...+.+. .+..++.|..++=. +|. |+++ ...+|.+|++. ....+ .. .+..-.--+.++..
T Consensus 1083 ~t~~KlKel~-~eE~KGtVsavceV-~G~-l~~~-~GqKI~v~~l~r~~~li-----------gV-aFiD~~~yv~s~~~ 1146 (1366)
T KOG1896|consen 1083 FTKNKLKELY-IEEQKGTVSAVCEV-RGH-LLSS-QGQKIIVRKLDRDSELI-----------GV-AFIDLPLYVHSMKV 1146 (1366)
T ss_pred cccceeeeee-hhhcccceEEEEEe-ccE-EEEc-cCcEEEEEEeccCCcce-----------ee-EEeccceeEEehhh
Confidence 0111111 12345677666543 565 4443 35679999994 33222 11 11112222344444
Q ss_pred eCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEe--cCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEE
Q 041325 368 VSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVL--EGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIK 445 (450)
Q Consensus 368 ~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~ 445 (450)
-.++|+.|.--..|.+.-.+.. + ..+..+ ....-.+.++.|.-++. ...++++..|+.|+
T Consensus 1147 vknlIl~gDV~ksisfl~fqee------p-~rlsL~srd~~~l~v~s~EFLVdg~-----------~L~flvsDa~rNi~ 1208 (1366)
T KOG1896|consen 1147 VKNLILAGDVMKSISFLGFQEE------P-YRLSLLSRDFEPLNVYSTEFLVDGS-----------NLSFLVSDADRNIH 1208 (1366)
T ss_pred hhhheehhhhhhceEEEEEccC------c-eEEEEeecCCchhhceeeeeEEcCC-----------eeEEEEEcCCCcEE
Confidence 4678888877777777766632 1 222222 12234678888888876 33788889999999
Q ss_pred EEE
Q 041325 446 IWQ 448 (450)
Q Consensus 446 iw~ 448 (450)
+|-
T Consensus 1209 vy~ 1211 (1366)
T KOG1896|consen 1209 VYM 1211 (1366)
T ss_pred EEE
Confidence 874
No 442
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=89.93 E-value=12 Score=32.49 Aligned_cols=86 Identities=13% Similarity=0.092 Sum_probs=54.5
Q ss_pred CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeC-----------------
Q 041325 315 DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSS----------------- 377 (450)
Q Consensus 315 ~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~----------------- 377 (450)
+|++.++-+..|.+..+|..+|+.. ....+. +....++|.|+++++|-.
T Consensus 212 dgrLwvldsgtGev~~vD~~~G~~e-----------~Va~vp---G~~rGL~f~G~llvVgmSk~R~~~~f~glpl~~~l 277 (335)
T TIGR03032 212 QGKLWLLNSGRGELGYVDPQAGKFQ-----------PVAFLP---GFTRGLAFAGDFAFVGLSKLRESRVFGGLPIEERL 277 (335)
T ss_pred CCeEEEEECCCCEEEEEcCCCCcEE-----------EEEECC---CCCcccceeCCEEEEEeccccCCCCcCCCchhhhh
Confidence 6778888888888888888776533 222332 344677777876665542
Q ss_pred ---CCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 378 ---DNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 378 ---dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
..-|.+-|++++. ......+.+--..+.+++..|.-.
T Consensus 278 ~~~~CGv~vidl~tG~------vv~~l~feg~v~EifdV~vLPg~r 317 (335)
T TIGR03032 278 DALGCGVAVIDLNSGD------VVHWLRFEGVIEEIYDVAVLPGVR 317 (335)
T ss_pred hhhcccEEEEECCCCC------EEEEEEeCCceeEEEEEEEecCCC
Confidence 1236667777651 122334556667788888888755
No 443
>PRK10115 protease 2; Provisional
Probab=89.85 E-value=23 Score=35.46 Aligned_cols=114 Identities=11% Similarity=0.128 Sum_probs=65.8
Q ss_pred ceEEEEEccCCCEEEEEeC-----CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC-----CcEEEE
Q 041325 212 TVSALALSSDGSLLYSTSW-----DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD-----TKIKVW 281 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~vw 281 (450)
.+..+.++|++++|+.+.. .-.|++.|+.+++.+.... ...-..++|.++++.++++...+ ..|..+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i---~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELL---DNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccc---cCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 4667889999998887643 2358889998876432221 11125689998777666665432 357777
Q ss_pred eCcchhhhccccchhhhhHhhcccceE-EEEEcCCCCEEEEeeC---CCcEEEEEcC
Q 041325 282 KKLRAALQVNKKHSLVQTLEKHKSAVT-ALALSTDGTVLYSGAC---DRSILVWERD 334 (450)
Q Consensus 282 d~~~~~~~~~~~~~~~~~~~~~~~~i~-~l~~~~~~~~l~~g~~---dg~i~vwd~~ 334 (450)
++.++. ....++.. ....... .+..+.++++++..+. ++.+.+++..
T Consensus 205 ~lgt~~----~~d~lv~~--e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 205 TIGTPA----SQDELVYE--EKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred ECCCCh----hHCeEEEe--eCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECc
Confidence 776653 11112222 2222222 3334447887665543 4578888853
No 444
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=89.59 E-value=12 Score=32.01 Aligned_cols=169 Identities=10% Similarity=0.115 Sum_probs=103.2
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEE-eCCCe
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSA-HQDHK 148 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~-~~dg~ 148 (450)
|-...|.++.| +.+.|++......-.||=...|+.+..... .+ -...-.|.+.+++ ++.+ -.++.
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL----------~g-~~DpE~Ieyig~n~fvi~dER~~~ 151 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPL----------TG-FSDPETIEYIGGNQFVIVDERDRA 151 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecc----------cc-cCChhHeEEecCCEEEEEehhcce
Confidence 55566999999 677888877778888887777777665322 22 2244567777665 3333 34777
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST 228 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 228 (450)
+.+..++........... . .........+.....++|+|....|..+
T Consensus 152 l~~~~vd~~t~~~~~~~~-----------~----------------------i~L~~~~k~N~GfEGlA~d~~~~~l~~a 198 (316)
T COG3204 152 LYLFTVDADTTVISAKVQ-----------K----------------------IPLGTTNKKNKGFEGLAWDPVDHRLFVA 198 (316)
T ss_pred EEEEEEcCCccEEeccce-----------E----------------------EeccccCCCCcCceeeecCCCCceEEEE
Confidence 888877765321111000 0 0000011125567889999988888888
Q ss_pred eCCCcEEEEecCCCeEEEEe---e------cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc
Q 041325 229 SWDRTFKIWRTSDFRCLESV---K------NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR 285 (450)
Q Consensus 229 ~~dg~i~iwd~~~~~~~~~~---~------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 285 (450)
-+-.-+.||.+......... . .-.-..+.++.+++..+.+++-+..++.+.-.|...
T Consensus 199 KEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 199 KERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred EccCCcEEEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 87788888877643211110 0 011245777888887777788888888887777643
No 445
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=89.58 E-value=14 Score=34.31 Aligned_cols=61 Identities=11% Similarity=0.291 Sum_probs=47.2
Q ss_pred CCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcC
Q 041325 265 NDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERD 334 (450)
Q Consensus 265 ~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~ 334 (450)
..+++++++..|-|++||.-... ....+.+....|-.+..+.+|+++++.+. ..|.+.|++
T Consensus 572 esGyIa~as~kGDirLyDRig~r--------AKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKR--------AKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred cCceEEEecCCCceeeehhhcch--------hhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 56799999999999999953322 34445666788999999999999887764 567777765
No 446
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=88.96 E-value=13 Score=34.65 Aligned_cols=57 Identities=9% Similarity=0.049 Sum_probs=38.3
Q ss_pred CCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeE--EEEee----cccccceEEEEEeecC
Q 041325 209 HVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRC--LESVK----NAHDDAINAIVVSKSN 265 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~----~~~~~~v~~~~~~~~~ 265 (450)
.-...+.|+|.|++++|++--..|.|++++..++.. +..+. .........|+++|+-
T Consensus 28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 344678999999998777655469999998665432 21111 1135678999999753
No 447
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=88.60 E-value=19 Score=32.84 Aligned_cols=108 Identities=15% Similarity=0.190 Sum_probs=56.5
Q ss_pred ceEEEEEccCCCEEEEEe-----------CCC-cEEEEecCC--Ce--EEEEeecccccceEEEEEeecCCcEEEEEcCC
Q 041325 212 TVSALALSSDGSLLYSTS-----------WDR-TFKIWRTSD--FR--CLESVKNAHDDAINAIVVSKSNDGFVYTGSAD 275 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~-----------~dg-~i~iwd~~~--~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 275 (450)
....|+|.++|+++++-. ..+ .|.+++-.+ ++ ....+. ........+++.+ ++ ++++...
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa-~~l~~p~Gi~~~~--~G-lyV~~~~ 90 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFA-EELSMVTGLAVAV--GG-VYVATPP 90 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEee-cCCCCccceeEec--CC-EEEeCCC
Confidence 567899999999877653 223 677776543 22 223333 2234567888874 44 4445554
Q ss_pred CcEEEEeCcchhhhccccchhhhhHhh----cccceEEEEEcCCCCEEEEee
Q 041325 276 TKIKVWKKLRAALQVNKKHSLVQTLEK----HKSAVTALALSTDGTVLYSGA 323 (450)
Q Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~~~~~----~~~~i~~l~~~~~~~~l~~g~ 323 (450)
...++.|..............+..+.. +......++|.|||.+.++-+
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G 142 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG 142 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence 433344543211000011112222222 234577899999998766544
No 448
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=88.43 E-value=5 Score=38.92 Aligned_cols=37 Identities=27% Similarity=0.574 Sum_probs=27.8
Q ss_pred cceEEEEEcC----CCCEEEEeeCCCcEEEEEcCCCceeee
Q 041325 305 SAVTALALST----DGTVLYSGACDRSILVWERDQGNYIVD 341 (450)
Q Consensus 305 ~~i~~l~~~~----~~~~l~~g~~dg~i~vwd~~~~~~~~~ 341 (450)
.....++++. +..+|++.+.|++||+||+.+++++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~ 255 (547)
T PF11715_consen 215 SVAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLAT 255 (547)
T ss_dssp --EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEE
T ss_pred CccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence 3455566665 678999999999999999999998543
No 449
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=88.43 E-value=22 Score=33.24 Aligned_cols=29 Identities=31% Similarity=0.568 Sum_probs=21.9
Q ss_pred cceEEEEEeC--CeEEEEeCCCeEEEeeCCC
Q 041325 360 KAILCLAVVS--NLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 360 ~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~ 388 (450)
..|.++..++ +.+++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3488888874 4899999999999999974
No 450
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=88.42 E-value=8.4 Score=34.47 Aligned_cols=53 Identities=21% Similarity=0.354 Sum_probs=34.0
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCce---eeeCCCCCCceeeeccccCCccceEEEEEeC
Q 041325 306 AVTALALSTDGTVLYSGACDRSILVWERDQGNY---IVDGDDDSGHMVLKGALRGHTKAILCLAVVS 369 (450)
Q Consensus 306 ~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 369 (450)
..+.|+|.|||+++++ ...|.|++++ ..+.. +.. ..............+++++
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~---------~~~v~~~~~~gllgia~~p 58 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVAD---------LPEVFADGERGLLGIAFHP 58 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE----------TTTBTSTTBSEEEEEE-T
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecc---------cccccccccCCcccceecc
Confidence 4588999999987665 5699999999 43332 110 1112334456778999987
No 451
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=88.35 E-value=28 Score=34.85 Aligned_cols=83 Identities=19% Similarity=0.195 Sum_probs=52.3
Q ss_pred cceEEEEEcCCCCEEEEeeCCCcEEEEEcCC--CceeeeCCCCCCceeeec-------cccCCccceEEEEEeC-----C
Q 041325 305 SAVTALALSTDGTVLYSGACDRSILVWERDQ--GNYIVDGDDDSGHMVLKG-------ALRGHTKAILCLAVVS-----N 370 (450)
Q Consensus 305 ~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~-----~ 370 (450)
-.|..+.++|+|++++..+..| |.|..+.. |+. ..+........+.. ....+...|..+.|+| .
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~-~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKN-GEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCcc-ccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 4689999999999999888766 55555532 110 00111111111111 1123456789999984 3
Q ss_pred eEEEEeCCCeEEEeeCCCC
Q 041325 371 LLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 371 ~l~s~~~dg~v~iwd~~~~ 389 (450)
.|+.-..|+++|+||+...
T Consensus 163 ~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred eEEEEecCCEEEEEecCCC
Confidence 8888899999999999754
No 452
>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]
Probab=88.19 E-value=32 Score=35.87 Aligned_cols=165 Identities=12% Similarity=0.128 Sum_probs=88.0
Q ss_pred CEEEEEeC---------CCcEEEEecCC-----C------eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEe
Q 041325 223 SLLYSTSW---------DRTFKIWRTSD-----F------RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWK 282 (450)
Q Consensus 223 ~~l~~~~~---------dg~i~iwd~~~-----~------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd 282 (450)
.++++|.. .|.+.|+|+-+ + +....+....++.|..++-. .++|+++.. ..|.+|+
T Consensus 1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavceV---~G~l~~~~G-qKI~v~~ 1122 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCEV---RGHLLSSQG-QKIIVRK 1122 (1366)
T ss_pred ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEEe---ccEEEEccC-cEEEEEE
Confidence 46777642 48899999743 2 22222333567788887765 446666544 5699999
Q ss_pred CcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccce
Q 041325 283 KLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI 362 (450)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 362 (450)
++.... ++.. .-..-++......-=.++|+.|..-..|.+.-+..... .+.+. ......-.+
T Consensus 1123 l~r~~~-------ligV-aFiD~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~---------rlsL~-srd~~~l~v 1184 (1366)
T KOG1896|consen 1123 LDRDSE-------LIGV-AFIDLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPY---------RLSLL-SRDFEPLNV 1184 (1366)
T ss_pred eccCCc-------ceee-EEeccceeEEehhhhhhheehhhhhhceEEEEEccCce---------EEEEe-ecCCchhhc
Confidence 843220 1100 00111222222222356777776666666655543211 11111 111122345
Q ss_pred EEEEEe--CC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcc
Q 041325 363 LCLAVV--SN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRP 409 (450)
Q Consensus 363 ~~~~~~--~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~ 409 (450)
+++.|- |. .++++..|+.|++|-..........+.+.+..-.-|.+.
T Consensus 1185 ~s~EFLVdg~~L~flvsDa~rNi~vy~Y~Pe~~eS~~G~RLv~radfhvg~ 1235 (1366)
T KOG1896|consen 1185 YSTEFLVDGSNLSFLVSDADRNIHVYMYAPENIESLSGQRLVRRADFHVGA 1235 (1366)
T ss_pred eeeeeEEcCCeeEEEEEcCCCcEEEEEeCCCCccccCcceeeeeeeeEecc
Confidence 666664 43 888999999999987765443334455666655555443
No 453
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=88.12 E-value=19 Score=32.25 Aligned_cols=69 Identities=14% Similarity=0.038 Sum_probs=41.1
Q ss_pred cceEEEEEe---------CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCC
Q 041325 360 KAILCLAVV---------SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSS 430 (450)
Q Consensus 360 ~~v~~~~~~---------~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~ 430 (450)
..++.+.|. +.++++.-..+.|...++..+ .........+......+..+++.||+.
T Consensus 253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~~~r~~~v~~~pDG~---------- 318 (331)
T PF07995_consen 253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDED----GSVTEEEEFLGGFGGRPRDVAQGPDGA---------- 318 (331)
T ss_dssp --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETT----EEEEEEEEECTTSSS-EEEEEEETTSE----------
T ss_pred cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecC----CCccceEEccccCCCCceEEEEcCCCe----------
Confidence 455666664 225665555677877777643 111122223345555899999999998
Q ss_pred ceEEEEEcccCCcEE
Q 041325 431 TSFLVYSGSLDCEIK 445 (450)
Q Consensus 431 ~~~~l~s~~~Dg~i~ 445 (450)
+.++-+.+|.|.
T Consensus 319 ---Lyv~~d~~G~iy 330 (331)
T PF07995_consen 319 ---LYVSDDSDGKIY 330 (331)
T ss_dssp ---EEEEE-TTTTEE
T ss_pred ---EEEEECCCCeEe
Confidence 777777888774
No 454
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.09 E-value=9.1 Score=28.52 Aligned_cols=109 Identities=10% Similarity=0.123 Sum_probs=67.6
Q ss_pred EEEccCCCEEEEEeCCCcEEEEecCCCe--------EEEEeecccccceEEEEEeecC----CcEEEEEcCCCcEEEEeC
Q 041325 216 LALSSDGSLLYSTSWDRTFKIWRTSDFR--------CLESVKNAHDDAINAIVVSKSN----DGFVYTGSADTKIKVWKK 283 (450)
Q Consensus 216 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~v~~~~~~~~~----~~~l~~~~~dg~i~vwd~ 283 (450)
-.|......|++++.-|+|.|++..... .+..+. -...|++++--+-. ...|+.|+. ..+..||+
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN--in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV 80 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN--INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDV 80 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE--CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEc
Confidence 3466666678888889999999876432 334443 55678888766532 235666665 56899999
Q ss_pred cchhhhccccchhhhhHhhcccceEEEEEcC----CCCEEEEeeCCCcEEEEEcCCCc
Q 041325 284 LRAALQVNKKHSLVQTLEKHKSAVTALALST----DGTVLYSGACDRSILVWERDQGN 337 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~----~~~~l~~g~~dg~i~vwd~~~~~ 337 (450)
.... .+. ++.-...+.++.+-. +..++++| .+..|.-||..-.+
T Consensus 81 ~~N~--------d~F-yke~~DGvn~i~~g~~~~~~~~l~ivG-Gncsi~Gfd~~G~e 128 (136)
T PF14781_consen 81 ENNS--------DLF-YKEVPDGVNAIVIGKLGDIPSPLVIVG-GNCSIQGFDYEGNE 128 (136)
T ss_pred ccCc--------hhh-hhhCccceeEEEEEecCCCCCcEEEEC-ceEEEEEeCCCCcE
Confidence 7655 222 223346677776632 33455554 46677777766443
No 455
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=87.68 E-value=2 Score=21.71 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=22.6
Q ss_pred cceEEEEEeCCEEEEeeCCCcEEEec
Q 041325 76 SYIPSLAIAGKLLYGGSSNGEIRAWN 101 (450)
Q Consensus 76 ~~v~~~~~d~~~l~tgs~dg~v~vw~ 101 (450)
..|.+++....+++.+...+.+|+|+
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEecC
Confidence 46889999888999999999999984
No 456
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.43 E-value=24 Score=36.97 Aligned_cols=74 Identities=18% Similarity=0.356 Sum_probs=49.5
Q ss_pred CCceEEEEEccCCCEEEEEeCCCcEEEEecC----CC---e-E----------------EEEeecccccceEEEEEeecC
Q 041325 210 VDTVSALALSSDGSLLYSTSWDRTFKIWRTS----DF---R-C----------------LESVKNAHDDAINAIVVSKSN 265 (450)
Q Consensus 210 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~----~~---~-~----------------~~~~~~~~~~~v~~~~~~~~~ 265 (450)
.-.|+|+....+|+.+.+|- || .+|.+. ++ + + +..+...+.++|..+.+.. .
T Consensus 178 g~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~-S 253 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN-S 253 (1311)
T ss_pred CceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc-c
Confidence 34688999888998877665 55 445432 11 1 1 0011124567899999986 4
Q ss_pred CcEEEEEcCCCcEEEEeCcchh
Q 041325 266 DGFVYTGSADTKIKVWKKLRAA 287 (450)
Q Consensus 266 ~~~l~~~~~dg~i~vwd~~~~~ 287 (450)
.+++.+=+..|.|.+||+....
T Consensus 254 R~IlY~lsek~~v~~Y~i~~~G 275 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGGNG 275 (1311)
T ss_pred cceeeeeccCceEEEEEccCCC
Confidence 5588999999999999997643
No 457
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=87.21 E-value=0.3 Score=47.65 Aligned_cols=193 Identities=10% Similarity=0.096 Sum_probs=98.4
Q ss_pred CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchh-hhhHhhcccceEE
Q 041325 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSL-VQTLEKHKSAVTA 309 (450)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~i~~ 309 (450)
.+.+++-+......-..+..+..+.+-.+.|...+...+. -.-|.+.+||+.--+-+ ....+ +.........+.-
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~--iq~~l~v~~~~p~gs~~~~ 185 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGE--IQPQLEVTPITPYGSDPQL 185 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccc--cccceEEeecCcCCCCcce
Confidence 4556665554332212233356778888888643333333 34477889987542200 01111 1111122233455
Q ss_pred EEEcC---CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEE-------------EEEeCCeEE
Q 041325 310 LALST---DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILC-------------LAVVSNLLF 373 (450)
Q Consensus 310 l~~~~---~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-------------~~~~~~~l~ 373 (450)
+.|.| +.-++..+-.++.|++........ ..+.+|...++. ++.+|..++
T Consensus 186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--------------~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a 251 (1283)
T KOG1916|consen 186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR--------------SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFA 251 (1283)
T ss_pred eeecccccccceeeeccCCCceeEeeechHHH--------------HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEE
Confidence 55555 666777788888888877664321 233345554443 444566788
Q ss_pred EEeCCCeEEEeeCCCCccccCCCceeEEEecCCC-cceEEEEEEecCCCCCCCCCCCCceEEEEEcc-cCCcEEEEE
Q 041325 374 SGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHR-RPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGS-LDCEIKIWQ 448 (450)
Q Consensus 374 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~-~Dg~i~iw~ 448 (450)
.++.||.+++|.+.-. ......|+...+.|. .+-.|.-|+.+....+ . -+.-.++++++ ....+++|.
T Consensus 252 ~a~~dG~v~f~Qiyi~---g~~~~rclhewkphd~~p~vC~lc~~~~~~~v---~-i~~w~~~Itttd~nre~k~w~ 321 (1283)
T KOG1916|consen 252 WAISDGSVGFYQIYIT---GKIVHRCLHEWKPHDKHPRVCWLCHKQEILVV---S-IGKWVLRITTTDVNREEKFWA 321 (1283)
T ss_pred EeecCCccceeeeeee---ccccHhhhhccCCCCCCCceeeeeccccccCC---c-cceeEEEEecccCCcceeEee
Confidence 8888888888865421 022345666677776 3333333433322100 0 11122445554 344578884
No 458
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=87.19 E-value=0.07 Score=48.06 Aligned_cols=135 Identities=13% Similarity=0.183 Sum_probs=88.7
Q ss_pred eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---EEEEeCCCeEEEEEcCCCcee
Q 041325 84 AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSA 160 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~ 160 (450)
.+.-++.++.+..|..||-........ ..++....++|.-++ ++.+-..+.+.+||+.+....
T Consensus 45 e~~nlavaca~tiv~~YD~agq~~le~--------------n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq 110 (615)
T KOG2247|consen 45 EGHNLAVACANTIVIYYDKAGQVILEL--------------NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ 110 (615)
T ss_pred CCCceehhhhhhHHHhhhhhcceeccc--------------CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH
Confidence 444577777888899998655443322 233456677776443 666677889999999876321
Q ss_pred EEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecC
Q 041325 161 YYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTS 240 (450)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 240 (450)
.....+ .|.... +.|++....++.+...|.+.|++..
T Consensus 111 qLE~gg-----------------------------------------~~s~sl--l~wsKg~~el~ig~~~gn~viynhg 147 (615)
T KOG2247|consen 111 QLESGG-----------------------------------------TSSKSL--LAWSKGTPELVIGNNAGNIVIYNHG 147 (615)
T ss_pred HHhccC-----------------------------------------cchHHH--HhhccCCccccccccccceEEEecc
Confidence 100000 122222 6788888888888899999999988
Q ss_pred CCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcE
Q 041325 241 DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKI 278 (450)
Q Consensus 241 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 278 (450)
+.+.+.... .|...+.++++.+ .++.+.++.|..+
T Consensus 148 tsR~iiv~G-kh~RRgtq~av~l--Ed~vil~dcd~~L 182 (615)
T KOG2247|consen 148 TSRRIIVMG-KHQRRGTQIAVTL--EDYVILCDCDNTL 182 (615)
T ss_pred chhhhhhhc-ccccceeEEEecc--cceeeecCcHHHH
Confidence 776665554 4888999999985 3466666555443
No 459
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=86.05 E-value=28 Score=32.05 Aligned_cols=144 Identities=10% Similarity=0.059 Sum_probs=0.0
Q ss_pred CCceEEEEEeCCe-EEEEeCCCeEEE--------EEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEE
Q 041325 127 GDAVKSLVVLGDK-LFSAHQDHKIRV--------WKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQ 197 (450)
Q Consensus 127 ~~~v~~l~~~~~~-l~s~~~dg~i~i--------w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (450)
.+....+...++. ++..+..|.+.. |.....
T Consensus 238 ~Gsf~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~---------------------------------------- 277 (398)
T PLN00033 238 TGTFSTVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNR---------------------------------------- 277 (398)
T ss_pred ccceeeEEEcCCCCEEEEECCccEEEecCCCCcceEEecC----------------------------------------
Q ss_pred EeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCe-----EEEEeecc-cccceEEEEEeecCCcEEEE
Q 041325 198 VRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFR-----CLESVKNA-HDDAINAIVVSKSNDGFVYT 271 (450)
Q Consensus 198 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~-~~~~v~~~~~~~~~~~~l~~ 271 (450)
.....+..+.+.+++.+++++. +--.++....++ ........ ....+.++.+. +++.++.
T Consensus 278 ----------~~~~~l~~v~~~~dg~l~l~g~--~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~--~d~~~~a 343 (398)
T PLN00033 278 ----------ASARRIQNMGWRADGGLWLLTR--GGGLYVSKGTGLTEEDFDFEEADIKSRGFGILDVGYR--SKKEAWA 343 (398)
T ss_pred ----------CCccceeeeeEcCCCCEEEEeC--CceEEEecCCCCcccccceeecccCCCCcceEEEEEc--CCCcEEE
Q ss_pred EcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEE
Q 041325 272 GSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVW 331 (450)
Q Consensus 272 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vw 331 (450)
++.+|.+....- ....++....-..-...++.+.|.++++.+++|. +|.|.-|
T Consensus 344 ~G~~G~v~~s~D------~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~-~G~il~~ 396 (398)
T PLN00033 344 AGGSGILLRSTD------GGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGN-DGVLLRY 396 (398)
T ss_pred EECCCcEEEeCC------CCcceeEccccCCCCcceeEEEEcCCCceEEEeC-CcEEEEe
No 460
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=85.46 E-value=28 Score=31.56 Aligned_cols=118 Identities=24% Similarity=0.316 Sum_probs=66.9
Q ss_pred ceEEEEE--cc-CCC-EEEEEeCCCcEEEEecC---CC----eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEE
Q 041325 212 TVSALAL--SS-DGS-LLYSTSWDRTFKIWRTS---DF----RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKV 280 (450)
Q Consensus 212 ~v~~~~~--~~-~~~-~l~~~~~dg~i~iwd~~---~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v 280 (450)
.+..+|+ ++ +|. +++....+|.+..|.+. .+ +.++.+. -...+..+.... ..+.|+.+-.+.-|.-
T Consensus 157 e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~--~~sQ~EGCVVDD-e~g~LYvgEE~~GIW~ 233 (381)
T PF02333_consen 157 EPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFK--VGSQPEGCVVDD-ETGRLYVGEEDVGIWR 233 (381)
T ss_dssp SEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EEEEEEET-TTTEEEEEETTTEEEE
T ss_pred cceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEec--CCCcceEEEEec-ccCCEEEecCccEEEE
Confidence 4566665 33 454 55667788988888764 22 4566665 345778888775 5568999999888877
Q ss_pred EeCcchhhhccccchhhhhHh--hcccceEEEEEc--CCCC-EEE-EeeCCCcEEEEEcCC
Q 041325 281 WKKLRAALQVNKKHSLVQTLE--KHKSAVTALALS--TDGT-VLY-SGACDRSILVWERDQ 335 (450)
Q Consensus 281 wd~~~~~~~~~~~~~~~~~~~--~~~~~i~~l~~~--~~~~-~l~-~g~~dg~i~vwd~~~ 335 (450)
|+.+-... .....+.... .....|-.|++- .+++ ||+ +.-.+++..||+...
T Consensus 234 y~Aep~~~---~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~ 291 (381)
T PF02333_consen 234 YDAEPEGG---NDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREG 291 (381)
T ss_dssp EESSCCC----S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESST
T ss_pred EecCCCCC---CcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCC
Confidence 77653221 1111221111 233556677664 3332 444 444577899999875
No 461
>PRK13684 Ycf48-like protein; Provisional
Probab=85.16 E-value=28 Score=31.24 Aligned_cols=113 Identities=10% Similarity=0.090 Sum_probs=62.1
Q ss_pred CceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecc---cccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchh
Q 041325 211 DTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNA---HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAA 287 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 287 (450)
..++++.+.++++.++.+ ..|.+++=..+.++.-.....+ ....+.++.+.+ ++.++.++.+|.+.. ....++
T Consensus 215 ~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~--~~~~~~~G~~G~v~~-S~d~G~ 290 (334)
T PRK13684 215 RRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRT--PGEIWAGGGNGTLLV-SKDGGK 290 (334)
T ss_pred ccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccccccCCccccccceeeEEEcC--CCCEEEEcCCCeEEE-eCCCCC
Confidence 468889999998876665 4676654334444332222211 224577888876 334555666776543 333322
Q ss_pred hhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEc
Q 041325 288 LQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWER 333 (450)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~ 333 (450)
.+........-......+.|..+++.+++ +..|.|..|+-
T Consensus 291 -----tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~~ 330 (334)
T PRK13684 291 -----TWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYVG 330 (334)
T ss_pred -----CCeECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEecC
Confidence 22222111122245777888766666554 55788877753
No 462
>PLN02153 epithiospecifier protein
Probab=84.93 E-value=29 Score=31.23 Aligned_cols=65 Identities=8% Similarity=0.058 Sum_probs=32.3
Q ss_pred CCCEEEEEeCC-------CcEEEEecCCCeEEEEeeccc-cc-c--eEEEEEeecCCcEEEEEcCC-----CcEEEEeCc
Q 041325 221 DGSLLYSTSWD-------RTFKIWRTSDFRCLESVKNAH-DD-A--INAIVVSKSNDGFVYTGSAD-----TKIKVWKKL 284 (450)
Q Consensus 221 ~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~-~~-~--v~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~ 284 (450)
++.+++.|+.+ ..+.+||+.+.+=...-.... .. . -.+++.. ++.+++.|+.+ ..+.+||..
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~ 109 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV 109 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence 34566666642 357788887754222111000 00 0 1122222 45577777653 357788886
Q ss_pred chh
Q 041325 285 RAA 287 (450)
Q Consensus 285 ~~~ 287 (450)
+.+
T Consensus 110 t~~ 112 (341)
T PLN02153 110 KNE 112 (341)
T ss_pred CCE
Confidence 654
No 463
>PLN02153 epithiospecifier protein
Probab=84.68 E-value=30 Score=31.16 Aligned_cols=65 Identities=9% Similarity=0.119 Sum_probs=32.2
Q ss_pred CCCEEEEEeCC-----CcEEEEecCCCeEEE--Eeec---ccccceEEEEEeecCCcEEEEEcCC-----------CcEE
Q 041325 221 DGSLLYSTSWD-----RTFKIWRTSDFRCLE--SVKN---AHDDAINAIVVSKSNDGFVYTGSAD-----------TKIK 279 (450)
Q Consensus 221 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~--~~~~---~~~~~v~~~~~~~~~~~~l~~~~~d-----------g~i~ 279 (450)
++++++.|+.+ ..+.+||..+.+-.. .+.. .....-.+++.. ++.+++.|+.+ ..+.
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~v~ 162 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASD--ENHVYVFGGVSKGGLMKTPERFRTIE 162 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEE--CCEEEEECCccCCCccCCCcccceEE
Confidence 35556666543 357788887654221 1100 011112223333 45566666653 2467
Q ss_pred EEeCcchh
Q 041325 280 VWKKLRAA 287 (450)
Q Consensus 280 vwd~~~~~ 287 (450)
+||..+.+
T Consensus 163 ~yd~~~~~ 170 (341)
T PLN02153 163 AYNIADGK 170 (341)
T ss_pred EEECCCCe
Confidence 78887654
No 464
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=84.33 E-value=60 Score=34.42 Aligned_cols=43 Identities=14% Similarity=0.126 Sum_probs=29.9
Q ss_pred ccceeeeEEeecCCCcceEEEEEeC----C-E----EEEeeCCCcEEEecCC
Q 041325 61 SEHQCSATLKVKGNSSYIPSLAIAG----K-L----LYGGSSNGEIRAWNRD 103 (450)
Q Consensus 61 ~~~~~~~~l~~~~h~~~v~~~~~d~----~-~----l~tgs~dg~v~vw~~~ 103 (450)
..+..+.+....||...|.|...+| . + .++.+-||.+.|=|.+
T Consensus 333 ~~Prvitt~mgdG~qR~veC~~C~G~a~~~~L~aPvala~a~DGSl~VGDfN 384 (1899)
T KOG4659|consen 333 EEPRVITTAMGDGHQRDVECPKCEGKADSISLFAPVALAYAPDGSLIVGDFN 384 (1899)
T ss_pred cCCceEEEeccCcccccccCCCCCCccccceeeceeeEEEcCCCcEEEccch
Confidence 3445566666669999999998843 2 2 2345689999997765
No 465
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=84.00 E-value=53 Score=33.52 Aligned_cols=240 Identities=13% Similarity=0.067 Sum_probs=0.0
Q ss_pred Ccc-cCCcccCCCccC-------CCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCc-
Q 041325 6 PFP-MPCRRNKEPKFQ-------PSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSS- 76 (450)
Q Consensus 6 ~~~-~~~~~~~~~~~~-------p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~- 76 (450)
+|. .....|+++.|+ +.+.-+.........=+.|..... .......++.-...++..+....-.+
T Consensus 73 ~w~i~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~------~~~~~~~~s~i~~~~l~~i~~~~tgg~ 146 (765)
T PF10214_consen 73 AWSIDDGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRV------ISSIRSRPSRIDPNPLLTISSSDTGGF 146 (765)
T ss_pred eeEcCCCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccc------cccccCCccccccceeEEechhhcCCC
Q ss_pred ceEEEEE---eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEE
Q 041325 77 YIPSLAI---AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWK 153 (450)
Q Consensus 77 ~v~~~~~---d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~ 153 (450)
+...++| +...||.-...|.-.||++........ +..-+.....|.|
T Consensus 147 ~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~--------------------------~~~~~~~~~~gsi---- 196 (765)
T PF10214_consen 147 PHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKS--------------------------SNLRLSRNISGSI---- 196 (765)
T ss_pred ccceEEeccCccceEEEEeccCcEEEEEeccccccCC--------------------------cceeeccCCCccc----
Q ss_pred cCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCc
Q 041325 154 IDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRT 233 (450)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 233 (450)
+... ...+.-..+.|.++.+.|+.++ ...
T Consensus 197 ~~d~--------------------------------------------------~e~s~w~rI~W~~~~~~lLv~~-r~~ 225 (765)
T PF10214_consen 197 IFDP--------------------------------------------------EELSNWKRILWVSDSNRLLVCN-RSK 225 (765)
T ss_pred cCCC--------------------------------------------------cccCcceeeEecCCCCEEEEEc-CCc
Q ss_pred EEEEecCCCeEEE-EeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcch--hhhccccchhhhhHhhcccceEEE
Q 041325 234 FKIWRTSDFRCLE-SVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA--ALQVNKKHSLVQTLEKHKSAVTAL 310 (450)
Q Consensus 234 i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~i~~l 310 (450)
+.++|+++..... .........|..+.-++.+..+++.-+. ..|...++... .....-.++....-....-.++..
T Consensus 226 l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs-~eiiw~~~~~~~~~~~~llSwkH~~d~~D~tLrl~~~ 304 (765)
T PF10214_consen 226 LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS-KEIIWLDVKSSSEKLTRLLSWKHFRDPEDPTLRLSVQ 304 (765)
T ss_pred eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEec-CeEEEEEccCCCCCeeeeeecccccCCCCCceEEEEE
Q ss_pred EE-cCCCCEEEEeeCCCcEEEEEc
Q 041325 311 AL-STDGTVLYSGACDRSILVWER 333 (450)
Q Consensus 311 ~~-~~~~~~l~~g~~dg~i~vwd~ 333 (450)
.. ..+--.++..-....|.+|.+
T Consensus 305 ~~~~~~~~~~lyS~~~~~v~v~~f 328 (765)
T PF10214_consen 305 KVGDTDFVVFLYSRLNPLVYVYFF 328 (765)
T ss_pred EcCCCEEEEEEEcCCCCcEEEEEE
No 466
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.84 E-value=41 Score=34.31 Aligned_cols=79 Identities=18% Similarity=0.236 Sum_probs=47.7
Q ss_pred EEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEEEcCCCc
Q 041325 80 SLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVWKIDNNT 158 (450)
Q Consensus 80 ~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~~~~~~ 158 (450)
|++--|+.+..|+.||.+.++.+........... ......+.-.-+..+|..+...+.. ++-.-.|+.|.++++...+
T Consensus 21 ~va~~~~~l~vGt~~G~L~lY~i~~~~~~~~~~~-~~~~~~~~~~~~kk~i~~l~~~~~~~~ll~l~dsqi~~~~l~~~~ 99 (877)
T KOG2063|consen 21 CVAAYGNHLYVGTRDGDLYLYSIYERGNPESVEL-VTETVKFEKEFSKKPINKLLVCASLELLLILSDSQIAVHKLPELE 99 (877)
T ss_pred HHHHhCCEEEEEcCCCcEEEEeccccccccchhh-hcchhHHhhhhccchhHHHhhcchhcchheecCCcceeeecCccc
Confidence 5555799999999999999999876542221111 0000000111225677777666554 5555567778888887665
Q ss_pred e
Q 041325 159 S 159 (450)
Q Consensus 159 ~ 159 (450)
.
T Consensus 100 ~ 100 (877)
T KOG2063|consen 100 P 100 (877)
T ss_pred c
Confidence 4
No 467
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=83.49 E-value=39 Score=31.68 Aligned_cols=60 Identities=18% Similarity=0.181 Sum_probs=36.5
Q ss_pred cceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccc-cCCccceEEEEEeCCe
Q 041325 305 SAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGAL-RGHTKAILCLAVVSNL 371 (450)
Q Consensus 305 ~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~ 371 (450)
...+.|+|.|||++|++--..|.|++++..++...... .+.... .........|++++++
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~-------~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVF-------TLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeee-------cCCceeccCCCCceeeEEECCCc
Confidence 45688999999987776654699999986554321000 000011 1125667888888664
No 468
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=83.45 E-value=23 Score=28.83 Aligned_cols=103 Identities=15% Similarity=0.042 Sum_probs=60.4
Q ss_pred CCCEEEEEeC--CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhh
Q 041325 221 DGSLLYSTSW--DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQ 298 (450)
Q Consensus 221 ~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 298 (450)
+|.++.+.+. ...|+.||+.+++.+...... ...+..=-....++.+....-.+|.-..+|.++-+ .+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~--------~lg 125 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLE--------ELG 125 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccceeEEEChHHhh--------hhc
Confidence 4566666653 457999999999887766533 12222111111144455556678888899986655 444
Q ss_pred hHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCC
Q 041325 299 TLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQ 335 (450)
Q Consensus 299 ~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~ 335 (450)
.+. .++.=+.++. |++-|+.++....++.-|.++
T Consensus 126 ~~~-y~GeGWgLt~--d~~~LimsdGsatL~frdP~t 159 (262)
T COG3823 126 RFS-YEGEGWGLTS--DDKNLIMSDGSATLQFRDPKT 159 (262)
T ss_pred ccc-cCCcceeeec--CCcceEeeCCceEEEecCHHH
Confidence 443 2344455654 555566666556666666554
No 469
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=83.28 E-value=6.1 Score=22.14 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=23.2
Q ss_pred cCCCEEEEEe-CCCcEEEEecCCCeEEEEee
Q 041325 220 SDGSLLYSTS-WDRTFKIWRTSDFRCLESVK 249 (450)
Q Consensus 220 ~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~ 249 (450)
|+++.|+++. .++.|.++|..+++.+..+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~ 31 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIP 31 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEE
Confidence 4666666554 58899999999998888776
No 470
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=82.88 E-value=29 Score=29.64 Aligned_cols=145 Identities=14% Similarity=0.022 Sum_probs=77.4
Q ss_pred ceEEEEEccCCCEEEEEe---CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEe-Ccchh
Q 041325 212 TVSALALSSDGSLLYSTS---WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWK-KLRAA 287 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd-~~~~~ 287 (450)
.+.+.+++++++.++... ....+.++.. +....... ....+..-.|.++ ....+....+...+++. ...+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~--~g~~l~~PS~d~~-g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL--TGGSLTRPSWDPD-GWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec--cCCccccccccCC-CCEEEEEcCCCceEEEEecCCCc
Confidence 688899999998777655 3334555543 33333332 2336777788875 33444444555566663 22222
Q ss_pred hhccccchhhhhHhhcccceEEEEEcCCCCEEEEee---CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEE
Q 041325 288 LQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA---CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILC 364 (450)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 364 (450)
.....+.. ......|+.+.++|||..++... .++.|.+--+.....- .+................++.
T Consensus 100 ----~~~~~v~~-~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g----~~~~l~~~~~~~~~~~~~v~~ 170 (253)
T PF10647_consen 100 ----GEPVEVDW-PGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDG----VPRRLTGPRRVAPPLLSDVTD 170 (253)
T ss_pred ----ceeEEecc-cccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCC----CcceeccceEecccccCccee
Confidence 00001111 11112899999999999887765 3577777655421100 000000111222233567899
Q ss_pred EEEeCC
Q 041325 365 LAVVSN 370 (450)
Q Consensus 365 ~~~~~~ 370 (450)
++|.++
T Consensus 171 v~W~~~ 176 (253)
T PF10647_consen 171 VAWSDD 176 (253)
T ss_pred eeecCC
Confidence 999865
No 471
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=82.83 E-value=17 Score=27.08 Aligned_cols=74 Identities=18% Similarity=0.148 Sum_probs=45.4
Q ss_pred CCCceEEEEEcc-----CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCC--cEEEEEcCCCcEEEE
Q 041325 209 HVDTVSALALSS-----DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSND--GFVYTGSADTKIKVW 281 (450)
Q Consensus 209 ~~~~v~~~~~~~-----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~vw 281 (450)
-...|++++-.+ +.+.|+.|+ ...+..||+.+...+..- .-.+.|+++.+-.... .-++..+.+..|.-|
T Consensus 46 in~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~N~d~Fyk--e~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gf 122 (136)
T PF14781_consen 46 INQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVENNSDLFYK--EVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGF 122 (136)
T ss_pred CCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEcccCchhhhh--hCccceeEEEEEecCCCCCcEEEECceEEEEEe
Confidence 344677776544 356677776 568999999877654433 3457788887743222 234555555677777
Q ss_pred eCcc
Q 041325 282 KKLR 285 (450)
Q Consensus 282 d~~~ 285 (450)
|.+.
T Consensus 123 d~~G 126 (136)
T PF14781_consen 123 DYEG 126 (136)
T ss_pred CCCC
Confidence 7543
No 472
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=82.12 E-value=40 Score=30.67 Aligned_cols=202 Identities=15% Similarity=0.150 Sum_probs=105.6
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEee----cCCcE-EEEE-cCC---CcEEEEeCcchhhhc
Q 041325 220 SDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSK----SNDGF-VYTG-SAD---TKIKVWKKLRAALQV 290 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~-l~~~-~~d---g~i~vwd~~~~~~~~ 290 (450)
|...+++...+++-+.+||+. |+.+..+. .+..+.+.... .+... |+++ ..+ ..|++|.+....
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~---~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~--- 138 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLP---VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDT--- 138 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE----SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTT---
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeec---CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCC---
Confidence 456678888889999999996 66666664 23444444321 12221 3333 332 469999875321
Q ss_pred cccchhhh----hHhhcccceEEEEEc--C-CCC-EEEEeeCCCcEEEEEcCC-CceeeeCCCCCCceeeeccccCCccc
Q 041325 291 NKKHSLVQ----TLEKHKSAVTALALS--T-DGT-VLYSGACDRSILVWERDQ-GNYIVDGDDDSGHMVLKGALRGHTKA 361 (450)
Q Consensus 291 ~~~~~~~~----~~~~~~~~i~~l~~~--~-~~~-~l~~g~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (450)
.....+. .+......+..+|+- + +|. +.+....+|.+..|.+.. ++- .....+.+.+.. ...
T Consensus 139 -g~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g-------~v~~~lVR~f~~-~sQ 209 (381)
T PF02333_consen 139 -GELTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDG-------KVSATLVREFKV-GSQ 209 (381)
T ss_dssp -TEEEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTS-------SEEEEEEEEEE--SS-
T ss_pred -CcceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCC-------cEeeEEEEEecC-CCc
Confidence 0000110 011122346677763 3 454 666777899998888752 110 001122333333 236
Q ss_pred eEEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecC--CCcceEEEEEEecCCCCCCCCCCCCceEEEEE
Q 041325 362 ILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG--HRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYS 437 (450)
Q Consensus 362 v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s 437 (450)
+-.+..+.. +|..+-++.-|.-|+.+... ......+....+ ....|-.|+.-.... +.+.+|+|
T Consensus 210 ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~---~~~~~~v~~~~g~~l~aDvEGlaly~~~~---------g~gYLivS 277 (381)
T PF02333_consen 210 PEGCVVDDETGRLYVGEEDVGIWRYDAEPEG---GNDRTLVASADGDGLVADVEGLALYYGSD---------GKGYLIVS 277 (381)
T ss_dssp EEEEEEETTTTEEEEEETTTEEEEEESSCCC----S--EEEEEBSSSSB-S-EEEEEEEE-CC---------C-EEEEEE
T ss_pred ceEEEEecccCCEEEecCccEEEEEecCCCC---CCcceeeecccccccccCccceEEEecCC---------CCeEEEEE
Confidence 777778754 88889888777777766321 111233433322 456788888876432 23446777
Q ss_pred cccCCcEEEEEe
Q 041325 438 GSLDCEIKIWQI 449 (450)
Q Consensus 438 ~~~Dg~i~iw~l 449 (450)
.=.+++..+|+.
T Consensus 278 sQG~~sf~Vy~r 289 (381)
T PF02333_consen 278 SQGDNSFAVYDR 289 (381)
T ss_dssp EGGGTEEEEEES
T ss_pred cCCCCeEEEEec
Confidence 777888999975
No 473
>KOG2006 consensus WD40 repeat protein [General function prediction only]
Probab=81.66 E-value=39 Score=34.52 Aligned_cols=75 Identities=16% Similarity=0.085 Sum_probs=46.1
Q ss_pred cceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEE
Q 041325 76 SYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWK 153 (450)
Q Consensus 76 ~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~ 153 (450)
..+.++......+++|..-|.+.+++.....-........ ..++..++.-+.|.++. ++.+-..|...+|.
T Consensus 151 Avc~SV~~e~~lla~G~~~g~v~~y~~~~~~ssl~~s~~~-------~~~~ti~~~~~~~~p~~~~~av~~~~g~ls~wS 223 (1023)
T KOG2006|consen 151 AVCCSVNHEFQLLAYGTPVGEVLLYSIDEANSSLVFSNRD-------DDTLTVPDNNSSWRPDQNGFAVTWEKGFLAFWS 223 (1023)
T ss_pred ceeeeccchhhhheecccccceeehhhhhhccceeeeccc-------CccccccccccCcCCccceeeeeecccceEEec
Confidence 3344444478999999999999999876433221111111 12333366667777666 66666677788887
Q ss_pred cCCC
Q 041325 154 IDNN 157 (450)
Q Consensus 154 ~~~~ 157 (450)
....
T Consensus 224 ~~g~ 227 (1023)
T KOG2006|consen 224 NQGN 227 (1023)
T ss_pred cccc
Confidence 6554
No 474
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=81.49 E-value=37 Score=29.94 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=38.4
Q ss_pred eCCEEEEeeCCCcEEEecCCC--CCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---EEEEeCCCeEEEEEcCCC
Q 041325 84 AGKLLYGGSSNGEIRAWNRDP--NNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---LFSAHQDHKIRVWKIDNN 157 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~ 157 (450)
++++|+.|+++|...+. +.. ....+ ..+...|+++...+.. ++.++....++.+++..-
T Consensus 12 ~~~~lL~GTe~Gly~~~-~~~~~~~~~k--------------l~~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L 75 (302)
T smart00036 12 DGKWLLVGTEEGLYVLN-ISDQPGTLEK--------------LIGRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSAL 75 (302)
T ss_pred CCcEEEEEeCCceEEEE-cccCCCCeEE--------------ecCcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHh
Confidence 34689999999855544 544 23322 2556789999998665 333344445999999654
No 475
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=81.15 E-value=14 Score=29.39 Aligned_cols=33 Identities=6% Similarity=-0.035 Sum_probs=27.1
Q ss_pred ceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 409 PVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 409 ~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
.|.+++|+|.|- ....+.+|++...+|.|.||.
T Consensus 87 ~vv~~aWSP~Gl-------~~~~rClLavLTs~~~l~l~~ 119 (173)
T PF12657_consen 87 QVVSAAWSPSGL-------GPNGRCLLAVLTSNGRLSLYG 119 (173)
T ss_pred cEEEEEECCCCC-------CCCCceEEEEEcCCCeEEEEe
Confidence 788999999875 223466999999999999995
No 476
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=81.03 E-value=40 Score=30.03 Aligned_cols=63 Identities=14% Similarity=0.267 Sum_probs=32.1
Q ss_pred CCCEEEEeeC-----CCcEEEEEcCCCceeeeCCCCCCceeeeccccC-CccceEEEEEeCCeEEEEeCCCe----EEEe
Q 041325 315 DGTVLYSGAC-----DRSILVWERDQGNYIVDGDDDSGHMVLKGALRG-HTKAILCLAVVSNLLFSGSSDNT----IRIW 384 (450)
Q Consensus 315 ~~~~l~~g~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~l~s~~~dg~----v~iw 384 (450)
++++.+.|+. ...+..||+.+.+.. ....+.. ....-.++...+.+.+.|+.++. +.+|
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~-----------~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~y 191 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWF-----------ELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKY 191 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCee-----------ECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEE
Confidence 5666666664 235778888765432 1111111 01111223445566677766543 4577
Q ss_pred eCCC
Q 041325 385 RRSS 388 (450)
Q Consensus 385 d~~~ 388 (450)
|..+
T Consensus 192 d~~~ 195 (323)
T TIGR03548 192 SPKK 195 (323)
T ss_pred ecCC
Confidence 7775
No 477
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=80.84 E-value=16 Score=29.03 Aligned_cols=32 Identities=19% Similarity=0.236 Sum_probs=25.4
Q ss_pred CceEEEEEccCC------CEEEEEeCCCcEEEEecCCC
Q 041325 211 DTVSALALSSDG------SLLYSTSWDRTFKIWRTSDF 242 (450)
Q Consensus 211 ~~v~~~~~~~~~------~~l~~~~~dg~i~iwd~~~~ 242 (450)
..+..++|+|.| -+|++.+.++.|.||.....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 378999999943 46888889999999987643
No 478
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=80.20 E-value=56 Score=31.17 Aligned_cols=70 Identities=11% Similarity=0.280 Sum_probs=42.6
Q ss_pred CCcceEEEEEe-CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe-CCeEEEEeCCCeEEE
Q 041325 74 NSSYIPSLAIA-GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL-GDKLFSAHQDHKIRV 151 (450)
Q Consensus 74 h~~~v~~~~~d-~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~i 151 (450)
-..+|.++.+| ...+..|+.|| +..+|..+++........ ...+|..+.-. ...+..|+.+| |.+
T Consensus 163 ~d~~V~aLv~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~~-----------~dk~I~al~~d~qg~LWVGTdqG-v~~ 229 (671)
T COG3292 163 KDTPVVALVFDANGRLWVGTPDG-LSYFDAGRGKALQLASPP-----------LDKAINALIADVQGRLWVGTDQG-VYL 229 (671)
T ss_pred cCccceeeeeeccCcEEEecCCc-ceEEccccceEEEcCCCc-----------chhhHHHHHHHhcCcEEEEeccc-eEE
Confidence 45678888885 56788888888 556677776655441111 11344444444 23388888777 666
Q ss_pred EEcCC
Q 041325 152 WKIDN 156 (450)
Q Consensus 152 w~~~~ 156 (450)
.+.+.
T Consensus 230 ~e~~G 234 (671)
T COG3292 230 QEAEG 234 (671)
T ss_pred Echhh
Confidence 66554
No 479
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=79.92 E-value=5.5 Score=20.88 Aligned_cols=23 Identities=17% Similarity=0.498 Sum_probs=19.6
Q ss_pred CEEEEeeCCCcEEEEEcCCCcee
Q 041325 317 TVLYSGACDRSILVWERDQGNYI 339 (450)
Q Consensus 317 ~~l~~g~~dg~i~vwd~~~~~~~ 339 (450)
..++.++.+|.+..+|..+|+.+
T Consensus 7 ~~v~~~~~~g~l~a~d~~~G~~~ 29 (33)
T smart00564 7 GTVYVGSTDGTLYALDAKTGEIL 29 (33)
T ss_pred CEEEEEcCCCEEEEEEcccCcEE
Confidence 36788889999999999988765
No 480
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=79.85 E-value=44 Score=29.77 Aligned_cols=109 Identities=6% Similarity=0.070 Sum_probs=51.9
Q ss_pred CCCEEEEEeCC-----CcEEEEecCCCeEE---EEeec-ccccceEEEEEeecCCcEEEEEcC-----CCcEEEEeCcch
Q 041325 221 DGSLLYSTSWD-----RTFKIWRTSDFRCL---ESVKN-AHDDAINAIVVSKSNDGFVYTGSA-----DTKIKVWKKLRA 286 (450)
Q Consensus 221 ~~~~l~~~~~d-----g~i~iwd~~~~~~~---~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~vwd~~~~ 286 (450)
++.+++.|+.+ ..+..+|+.+.+-. ..+.. .....-.+++.. ++.+.+.|+. ...+..||+.+.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~--~~~iYv~GG~~~~~~~~~v~~yd~~~~ 149 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYK--DGTLYVGGGNRNGKPSNKSYLFNLETQ 149 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEE--CCEEEEEeCcCCCccCceEEEEcCCCC
Confidence 45566666643 34666777665421 12210 111111223333 4556666664 245778888765
Q ss_pred hhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCc----EEEEEcCCCce
Q 041325 287 ALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRS----ILVWERDQGNY 338 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~----i~vwd~~~~~~ 338 (450)
+.. .+..+.... .....+..-++++.+.|+.++. +.+||..+.+.
T Consensus 150 ~W~------~~~~~p~~~-r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 150 EWF------ELPDFPGEP-RVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred Cee------ECCCCCCCC-CCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 522 222221100 1111222236777777776543 46788776553
No 481
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=79.51 E-value=63 Score=31.93 Aligned_cols=67 Identities=21% Similarity=0.350 Sum_probs=46.4
Q ss_pred ceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEc
Q 041325 77 YIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKI 154 (450)
Q Consensus 77 ~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~ 154 (450)
.++++.- .+..++.+..||.|++++........+... ..+-..+.|.+.+|+++..|+.+.-|.-
T Consensus 16 ~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~-------------~~p~~nlv~tnhgl~~~tsdrr~la~~~ 82 (1636)
T KOG3616|consen 16 FTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEE-------------AKPKENLVFTNHGLVTATSDRRALAWKE 82 (1636)
T ss_pred eeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhh-------------cCCccceeeeccceEEEeccchhheeec
Confidence 3455554 488899999999999999876654333211 1234455666667899999998888876
Q ss_pred CC
Q 041325 155 DN 156 (450)
Q Consensus 155 ~~ 156 (450)
+.
T Consensus 83 dg 84 (1636)
T KOG3616|consen 83 DG 84 (1636)
T ss_pred cC
Confidence 54
No 482
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=78.89 E-value=49 Score=29.80 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=12.3
Q ss_pred EEeCCEEEEeeCC-CcEEEecCC
Q 041325 82 AIAGKLLYGGSSN-GEIRAWNRD 103 (450)
Q Consensus 82 ~~d~~~l~tgs~d-g~v~vw~~~ 103 (450)
..++++.+.|+.. ..+.++|++
T Consensus 15 ~~~~~vyv~GG~~~~~~~~~d~~ 37 (346)
T TIGR03547 15 IIGDKVYVGLGSAGTSWYKLDLK 37 (346)
T ss_pred EECCEEEEEccccCCeeEEEECC
Confidence 3366666666643 345566653
No 483
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=78.74 E-value=44 Score=31.19 Aligned_cols=31 Identities=26% Similarity=0.501 Sum_probs=25.3
Q ss_pred cceEEEEEcCCCCEEEEeeCCCcEEEEEcCC
Q 041325 305 SAVTALALSTDGTVLYSGACDRSILVWERDQ 335 (450)
Q Consensus 305 ~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~ 335 (450)
..|..++..+..+.+++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 4499999999889999999999999999974
No 484
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=78.23 E-value=55 Score=29.97 Aligned_cols=24 Identities=8% Similarity=-0.036 Sum_probs=13.2
Q ss_pred EEEeCCEEEEeeC-CCcEEEecCCC
Q 041325 81 LAIAGKLLYGGSS-NGEIRAWNRDP 104 (450)
Q Consensus 81 ~~~d~~~l~tgs~-dg~v~vw~~~~ 104 (450)
..+++++.+.|+. +..+.++|+..
T Consensus 35 ~~~~~~iyv~gG~~~~~~~~~d~~~ 59 (376)
T PRK14131 35 AIDNNTVYVGLGSAGTSWYKLDLNA 59 (376)
T ss_pred EEECCEEEEEeCCCCCeEEEEECCC
Confidence 3346666665554 44566677653
No 485
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=77.67 E-value=48 Score=28.98 Aligned_cols=181 Identities=18% Similarity=0.141 Sum_probs=85.0
Q ss_pred cEEEEecCCCeEEEEeecc-----cccceEEEEEeecCC----cE-EEEEcCCCcEEEEeCcchhhhccccchhh-----
Q 041325 233 TFKIWRTSDFRCLESVKNA-----HDDAINAIVVSKSND----GF-VYTGSADTKIKVWKKLRAALQVNKKHSLV----- 297 (450)
Q Consensus 233 ~i~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~----~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~~----- 297 (450)
.|.+||+.+.+.++.+... ..+....+.+..... .+ .++=...+.|.++|+.+++.-........
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 6888999999888877522 346778888876332 34 44555557899999988652110000000
Q ss_pred ------hhHhhcccceEEEEEcC---CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceee--e--ccccCCc-cceE
Q 041325 298 ------QTLEKHKSAVTALALST---DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVL--K--GALRGHT-KAIL 363 (450)
Q Consensus 298 ------~~~~~~~~~i~~l~~~~---~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~--~~~~~~~-~~v~ 363 (450)
.........+..++.+| +++.|+-....+ -++|.+.+.... ........ . ....+.. ....
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~----~~~~~~~~~~~~~v~~lG~k~~~s~ 189 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLR----DPSLSDAQALASQVQDLGDKGSQSD 189 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHC----STT--HHH-HHHT-EEEEE---SEC
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhh----CccccccccccccceeccccCCCCc
Confidence 00001122355666655 555555554333 122322221100 00000000 0 0111111 2334
Q ss_pred EEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEe--cCC
Q 041325 364 CLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVV--DSD 420 (450)
Q Consensus 364 ~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~~ 420 (450)
.++.+ |.++++--..+.|..|+...... ......+..-...-..+.++.+.+ ++.
T Consensus 190 g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~--~~~~~~l~~d~~~l~~pd~~~i~~~~~g~ 248 (287)
T PF03022_consen 190 GMAIDPNGNLYFTDVEQNAIGCWDPDGPYT--PENFEILAQDPRTLQWPDGLKIDPEGDGY 248 (287)
T ss_dssp EEEEETTTEEEEEECCCTEEEEEETTTSB---GCCEEEEEE-CC-GSSEEEEEE-T--TS-
T ss_pred eEEECCCCcEEEecCCCCeEEEEeCCCCcC--ccchheeEEcCceeeccceeeeccccCce
Confidence 45555 55777888889999999886311 111222322221134677888877 555
No 486
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=76.96 E-value=9.4 Score=21.27 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=18.8
Q ss_pred EEEEEeCCEEEEeeCCCcEEEecCCC
Q 041325 79 PSLAIAGKLLYGGSSNGEIRAWNRDP 104 (450)
Q Consensus 79 ~~~~~d~~~l~tgs~dg~v~vw~~~~ 104 (450)
..++..+..++.++.||.++..|.++
T Consensus 15 ~~~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-TTSEEEEEETT-
T ss_pred cCCEEECCEEEEEcCCCEEEEEeCCC
Confidence 45566788999999999999998753
No 487
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=76.42 E-value=14 Score=33.67 Aligned_cols=163 Identities=12% Similarity=0.129 Sum_probs=90.7
Q ss_pred CCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEE-Eeecc-cc---cceE-EEEEeecCCcEEEEEcCCCcEEEE-
Q 041325 209 HVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLE-SVKNA-HD---DAIN-AIVVSKSNDGFVYTGSADTKIKVW- 281 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~-~~~~~-~~---~~v~-~~~~~~~~~~~l~~~~~dg~i~vw- 281 (450)
-...|..+-..|||+.+..-+. ..+.++++.+..... ++-.. .. ..|+ .+.... +..-++++..||.|.-|
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWF 296 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWF 296 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeee
Confidence 4456778889999999887764 788888887543221 11111 11 1122 111111 34358889999999887
Q ss_pred eCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccc
Q 041325 282 KKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA 361 (450)
Q Consensus 282 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (450)
|++.+.. .....++.++-...++..+.-..+.+-+++-+..|++.++.....+.+. .........
T Consensus 297 dvr~~~~---p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL------------~~~~~~~~~ 361 (733)
T COG4590 297 DVRRDGQ---PHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL------------FERAYQAPQ 361 (733)
T ss_pred eeecCCC---CcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee------------hhhhhcCcc
Confidence 5544331 2222333343333455544444455667778888888888766554331 111111223
Q ss_pred eEEEEEeCCeEEEEeCCCeEEEeeCCCC
Q 041325 362 ILCLAVVSNLLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 362 v~~~~~~~~~l~s~~~dg~v~iwd~~~~ 389 (450)
+..++..++++++- +.|.++++.+++.
T Consensus 362 ~~~~Sp~~~~Ll~e-~~gki~~~~l~Nr 388 (733)
T COG4590 362 LVAMSPNQAYLLSE-DQGKIRLAQLENR 388 (733)
T ss_pred eeeeCcccchheee-cCCceEEEEecCC
Confidence 34444445566654 3567888887753
No 488
>PLN02193 nitrile-specifier protein
Probab=76.40 E-value=72 Score=30.35 Aligned_cols=150 Identities=7% Similarity=0.027 Sum_probs=69.7
Q ss_pred CCCEEEEEeCC-------CcEEEEecCCCeEEEEeecc--ccc--c-eEEEEEeecCCcEEEEEcCC-----CcEEEEeC
Q 041325 221 DGSLLYSTSWD-------RTFKIWRTSDFRCLESVKNA--HDD--A-INAIVVSKSNDGFVYTGSAD-----TKIKVWKK 283 (450)
Q Consensus 221 ~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~--~~~--~-v~~~~~~~~~~~~l~~~~~d-----g~i~vwd~ 283 (450)
++.+++.|+.+ ..+..||+.+.+=.. +... ... . -.+++.. ++.+++.|+.+ ..+..||+
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~-~~~~g~~P~~~~~~~~~v~~--~~~lYvfGG~~~~~~~ndv~~yD~ 251 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSI-SPATGDVPHLSCLGVRMVSI--GSTLYVFGGRDASRQYNGFYSFDT 251 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEe-CCCCCCCCCCcccceEEEEE--CCEEEEECCCCCCCCCccEEEEEC
Confidence 34556666642 247788887654321 1100 001 1 1122222 45566777654 35778888
Q ss_pred cchhhhccccchhhhhHh---hcccceEEEEEcCCCCEEEEeeCCC-----cEEEEEcCCCceeeeCCCCCCceeeeccc
Q 041325 284 LRAALQVNKKHSLVQTLE---KHKSAVTALALSTDGTVLYSGACDR-----SILVWERDQGNYIVDGDDDSGHMVLKGAL 355 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~---~~~~~i~~l~~~~~~~~l~~g~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 355 (450)
.+.+.. .+..+. ..... .+++. -++++.+.|+.++ .+..||+.+.+.... ... ...
T Consensus 252 ~t~~W~------~l~~~~~~P~~R~~-h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~-~~~-------~~~ 315 (470)
T PLN02193 252 TTNEWK------LLTPVEEGPTPRSF-HSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWFHC-STP-------GDS 315 (470)
T ss_pred CCCEEE------EcCcCCCCCCCccc-eEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEEeC-CCC-------CCC
Confidence 765422 221110 01111 12222 2566777776543 467788776553310 000 000
Q ss_pred cCCccceEEEEEeCCeEEEEeCC----CeEEEeeCCCC
Q 041325 356 RGHTKAILCLAVVSNLLFSGSSD----NTIRIWRRSSS 389 (450)
Q Consensus 356 ~~~~~~v~~~~~~~~~l~s~~~d----g~v~iwd~~~~ 389 (450)
......-....+.+.+++.++.+ ..+.+||+.+.
T Consensus 316 ~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~ 353 (470)
T PLN02193 316 FSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQD 353 (470)
T ss_pred CCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCC
Confidence 01111112333456666666655 45888888753
No 489
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=76.38 E-value=7 Score=37.95 Aligned_cols=37 Identities=35% Similarity=0.711 Sum_probs=28.3
Q ss_pred ceEEEEEcc----CCCEEEEEeCCCcEEEEecCCCeEEEEe
Q 041325 212 TVSALALSS----DGSLLYSTSWDRTFKIWRTSDFRCLESV 248 (450)
Q Consensus 212 ~v~~~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 248 (450)
.+..++++. +..++++.+.|+++|+||+.+++++...
T Consensus 216 ~~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 216 VAASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp -EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEE
T ss_pred ccceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEe
Confidence 445555555 6788999999999999999999996655
No 490
>PLN02193 nitrile-specifier protein
Probab=76.06 E-value=73 Score=30.28 Aligned_cols=111 Identities=7% Similarity=0.067 Sum_probs=53.2
Q ss_pred CCCEEEEEeCC-----CcEEEEecCCCeEEEEeec---ccccceEEEEEeecCCcEEEEEcCCC-----cEEEEeCcchh
Q 041325 221 DGSLLYSTSWD-----RTFKIWRTSDFRCLESVKN---AHDDAINAIVVSKSNDGFVYTGSADT-----KIKVWKKLRAA 287 (450)
Q Consensus 221 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~ 287 (450)
++.+.+.|+.+ ..+..||+.+.+-...-.. .....-.+++.. ++.+++.|+.++ .+..||+.+.+
T Consensus 228 ~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~--~~~iYv~GG~~~~~~~~~~~~yd~~t~~ 305 (470)
T PLN02193 228 GSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAAD--EENVYVFGGVSATARLKTLDSYNIVDKK 305 (470)
T ss_pred CCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEE--CCEEEEECCCCCCCCcceEEEEECCCCE
Confidence 34555666544 3577888877543221110 011111223333 455667776543 46677876654
Q ss_pred hhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC----CcEEEEEcCCCce
Q 041325 288 LQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD----RSILVWERDQGNY 338 (450)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d----g~i~vwd~~~~~~ 338 (450)
....... ............+.+ ++++++.|+.+ ..+.+||+.+.+.
T Consensus 306 W~~~~~~---~~~~~~R~~~~~~~~--~gkiyviGG~~g~~~~dv~~yD~~t~~W 355 (470)
T PLN02193 306 WFHCSTP---GDSFSIRGGAGLEVV--QGKVWVVYGFNGCEVDDVHYYDPVQDKW 355 (470)
T ss_pred EEeCCCC---CCCCCCCCCcEEEEE--CCcEEEEECCCCCccCceEEEECCCCEE
Confidence 2211100 000011111122222 56777777655 4588999887654
No 491
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=75.99 E-value=48 Score=30.26 Aligned_cols=107 Identities=14% Similarity=0.167 Sum_probs=51.3
Q ss_pred cceEEEEEcCCCCEEEEee-----------CCC-cEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeE
Q 041325 305 SAVTALALSTDGTVLYSGA-----------CDR-SILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLL 372 (450)
Q Consensus 305 ~~i~~l~~~~~~~~l~~g~-----------~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l 372 (450)
.....|+|.++|+++++-. ..+ .|.+++-.++. +.......+...-.....+++.++-|
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgd---------G~~d~~~vfa~~l~~p~Gi~~~~~Gl 84 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGD---------GKYDKSNVFAEELSMVTGLAVAVGGV 84 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCC---------CCcceeEEeecCCCCccceeEecCCE
Confidence 3457789999998777643 223 67776654321 00000111111122346677764325
Q ss_pred EEEeCCCeEEEeeCCCCccccCCCceeEEEecC----CCcceEEEEEEecCC
Q 041325 373 FSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG----HRRPVKCLTAVVDSD 420 (450)
Q Consensus 373 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~----h~~~v~~l~~~~~~~ 420 (450)
+.+......++.|.........+....+..+.. +......+.|.||+.
T Consensus 85 yV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~ 136 (367)
T TIGR02604 85 YVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW 136 (367)
T ss_pred EEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC
Confidence 555555434444554221111011122233322 234477899999987
No 492
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=75.66 E-value=56 Score=28.75 Aligned_cols=158 Identities=15% Similarity=0.126 Sum_probs=74.0
Q ss_pred ccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEE
Q 041325 251 AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILV 330 (450)
Q Consensus 251 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~v 330 (450)
.....+..+.-.++ ..+++++..-....-||--... +.+.. ......|..|.|.|++.+.+.+ ..|.|+.
T Consensus 142 ~~~gs~~~~~r~~d-G~~vavs~~G~~~~s~~~G~~~------w~~~~--r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~ 211 (302)
T PF14870_consen 142 ETSGSINDITRSSD-GRYVAVSSRGNFYSSWDPGQTT------WQPHN--RNSSRRIQSMGFSPDGNLWMLA-RGGQIQF 211 (302)
T ss_dssp S----EEEEEE-TT-S-EEEEETTSSEEEEE-TT-SS-------EEEE----SSS-EEEEEE-TTS-EEEEE-TTTEEEE
T ss_pred CCcceeEeEEECCC-CcEEEEECcccEEEEecCCCcc------ceEEc--cCccceehhceecCCCCEEEEe-CCcEEEE
Confidence 44567777777753 3355566554444567742211 11111 1245789999999998876655 7888888
Q ss_pred EEcC-CCceeeeCCCCCCceeeeccccCCccceEEEEEeC-CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCc
Q 041325 331 WERD-QGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS-NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRR 408 (450)
Q Consensus 331 wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~ 408 (450)
=+.. ..+.. .............+..++|.+ +.+.+++..|.+.+ .... .+.++.......-..
T Consensus 212 s~~~~~~~~w---------~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~-S~Dg-----GktW~~~~~~~~~~~ 276 (302)
T PF14870_consen 212 SDDPDDGETW---------SEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTLLV-STDG-----GKTWQKDRVGENVPS 276 (302)
T ss_dssp EE-TTEEEEE------------B-TTSS--S-EEEEEESSSS-EEEEESTT-EEE-ESST-----TSS-EE-GGGTTSSS
T ss_pred ccCCCCcccc---------ccccCCcccCceeeEEEEecCCCCEEEEeCCccEEE-eCCC-----CccceECccccCCCC
Confidence 7722 11110 000111222334578999984 45555666665433 2222 233444333344456
Q ss_pred ceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEE
Q 041325 409 PVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIW 447 (450)
Q Consensus 409 ~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw 447 (450)
....|.|..+.+ -+.-+.||.|.-|
T Consensus 277 n~~~i~f~~~~~--------------gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 277 NLYRIVFVNPDK--------------GFVLGQDGVLLRY 301 (302)
T ss_dssp ---EEEEEETTE--------------EEEE-STTEEEEE
T ss_pred ceEEEEEcCCCc--------------eEEECCCcEEEEe
Confidence 788999987755 4455678877655
No 493
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=75.64 E-value=8.8 Score=19.46 Aligned_cols=25 Identities=16% Similarity=0.422 Sum_probs=16.5
Q ss_pred eEEEEEcCCCCEEEEeeCCCcEEEE
Q 041325 307 VTALALSTDGTVLYSGACDRSILVW 331 (450)
Q Consensus 307 i~~l~~~~~~~~l~~g~~dg~i~vw 331 (450)
...++++++|+++++=+....|++|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 4567777777776666666666654
No 494
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=74.70 E-value=11 Score=20.79 Aligned_cols=31 Identities=10% Similarity=0.178 Sum_probs=19.8
Q ss_pred CCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccC--CcEEEE
Q 041325 405 GHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLD--CEIKIW 447 (450)
Q Consensus 405 ~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~D--g~i~iw 447 (450)
.....-....|+||++. ++.++..+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~------------i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKY------------IYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSE------------EEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCE------------EEEEecCCCCCCcCEE
Confidence 34456678899999984 55555556 666666
No 495
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=74.53 E-value=41 Score=28.58 Aligned_cols=71 Identities=20% Similarity=0.119 Sum_probs=48.6
Q ss_pred CCCceEEEEEcc-------CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEee--c-CCcEEEEEcCCCcE
Q 041325 209 HVDTVSALALSS-------DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSK--S-NDGFVYTGSADTKI 278 (450)
Q Consensus 209 ~~~~v~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~--~-~~~~l~~~~~dg~i 278 (450)
+...|+||+--. .-..|+.|.++|.|.|.|.+....+..+.. ..-++ .+...- + -+..+++++.||.|
T Consensus 175 ~~t~ITcm~tikk~~~d~~a~scLViGTE~~~i~iLd~~af~il~~~~l-psvPv-~i~~~G~~devdyRI~Va~Rdg~i 252 (257)
T PF14779_consen 175 RQTVITCMATIKKSSADEDAVSCLVIGTESGEIYILDPQAFTILKQVQL-PSVPV-FISVSGQYDEVDYRIVVACRDGKI 252 (257)
T ss_pred cCceeEEeeeecccccCCCCcceEEEEecCCeEEEECchhheeEEEEec-CCCce-EEEEEeeeeccceEEEEEeCCCEE
Confidence 455788887533 124799999999999999998888877762 22222 333321 1 34568999999998
Q ss_pred EEE
Q 041325 279 KVW 281 (450)
Q Consensus 279 ~vw 281 (450)
++.
T Consensus 253 y~i 255 (257)
T PF14779_consen 253 YTI 255 (257)
T ss_pred EEE
Confidence 764
No 496
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=71.94 E-value=76 Score=28.59 Aligned_cols=23 Identities=4% Similarity=0.147 Sum_probs=14.3
Q ss_pred CCcEEEEEcCC-----------CcEEEEeCcchh
Q 041325 265 NDGFVYTGSAD-----------TKIKVWKKLRAA 287 (450)
Q Consensus 265 ~~~~l~~~~~d-----------g~i~vwd~~~~~ 287 (450)
++.+.+.|+.+ ..+..||..+..
T Consensus 63 ~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~ 96 (346)
T TIGR03547 63 DGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNS 96 (346)
T ss_pred CCEEEEEeCCCCCCCCCcceecccEEEEECCCCE
Confidence 45566777653 246678876654
No 497
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=71.76 E-value=98 Score=29.78 Aligned_cols=216 Identities=13% Similarity=0.162 Sum_probs=93.7
Q ss_pred CcceEEEEE-eCC--EEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC------------e
Q 041325 75 SSYIPSLAI-AGK--LLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD------------K 139 (450)
Q Consensus 75 ~~~v~~~~~-d~~--~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~------------~ 139 (450)
....+++.+ +.. +|+.|+.-|.=.++.+........ .-...-++|.+++..+. .
T Consensus 255 ~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~-----------~~~~N~~Pi~D~~v~~~~~~~~~~~~~~~~ 323 (504)
T PF10433_consen 255 CSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVL-----------DSLPNWGPIVDFCVVDSSNSGQPSNPSSDQ 323 (504)
T ss_dssp -S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEE-----------EEE----SEEEEEEE-TSSSSS-------E
T ss_pred CChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEE-----------EeccCcCCccceEEeccccCCCCcccccce
Confidence 445567777 556 888888765544444332222111 11223457877777421 4
Q ss_pred EEEEe---CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCC--cceeEeeecCceEEEeecceeeeecCCCceE
Q 041325 140 LFSAH---QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLN--DRFTKCFLANNYVQVRRHKKCTWVHHVDTVS 214 (450)
Q Consensus 140 l~s~~---~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 214 (450)
+++++ .+|.+++..-.-+............. ...+.+++... +.+..+........+.-.. ....+.+.
T Consensus 324 lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~--v~~iW~l~~~~~~~~~lv~S~~~~T~vl~~~~----~d~~e~~~ 397 (504)
T PF10433_consen 324 LVACSGAGKRGSLRILRNGIGIEGLELASSELPG--VTGIWTLKLSSSDHSYLVLSFPNETRVLQISE----GDDGEEVE 397 (504)
T ss_dssp EEEEESSGGG-EEEEEEESBEEE--EEEEEEEST--EEEEEEE-SSSSSBSEEEEEESSEEEEEEES--------SSEEE
T ss_pred EEEEECcCCCCcEEEEeccCCceeeeeeccCCCC--ceEEEEeeecCCCceEEEEEcCCceEEEEEec----ccCCcchh
Confidence 55553 47788887543221100111111111 34555554433 4444444444333322210 00111111
Q ss_pred EE---EEccC----------CCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEE
Q 041325 215 AL---ALSSD----------GSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVW 281 (450)
Q Consensus 215 ~~---~~~~~----------~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw 281 (450)
.+ .|..+ +..++=.. ...|++.+...++....+.......|.+.+.. +..++.+..++.+.++
T Consensus 398 e~~~~~f~~~~~Tl~~~~~~~~~ivQVt-~~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~---~~~v~v~~~~~~~~~~ 473 (504)
T PF10433_consen 398 EVEEDGFDTDEPTLAAGNVGDGRIVQVT-PKGIRLIDLEDGKLTQEWKPPAGSIIVAASIN---DPQVLVALSGGELVYF 473 (504)
T ss_dssp EE---TS-SSS-EEEEEEETTTEEEEEE-SSEEEEEESSSTSEEEEEE-TTS---SEEEES---SSEEEEEE-TTEEEEE
T ss_pred hhhhccCCCCCCCeEEEEcCCCeEEEEe-cCeEEEEECCCCeEEEEEeCCCCCeEEEEEEC---CCEEEEEEeCCcEEEE
Confidence 11 12223 33344333 34578888877777777654556667777665 3467777778889998
Q ss_pred eCcchhhhccccchhhhhHhhcccceEEEEEcC
Q 041325 282 KKLRAALQVNKKHSLVQTLEKHKSAVTALALST 314 (450)
Q Consensus 282 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~ 314 (450)
.+........... .........|.|+...|
T Consensus 474 ~~~~~~~~~~~~~---~~~~~~~~eis~l~i~p 503 (504)
T PF10433_consen 474 ELDDNKISVSDND---ETILELDNEISCLSIEP 503 (504)
T ss_dssp EEETTEEEEEEE-------EE-SS-EEEEE---
T ss_pred EEECCceeeeeec---cccccCCCceEEEEeCC
Confidence 8766542111100 00011456788887765
No 498
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=70.75 E-value=15 Score=36.40 Aligned_cols=144 Identities=10% Similarity=0.069 Sum_probs=83.4
Q ss_pred EEEEEeCCCcEEEEecCCCe---EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhH
Q 041325 224 LLYSTSWDRTFKIWRTSDFR---CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTL 300 (450)
Q Consensus 224 ~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 300 (450)
.+..|+.++.|.++.-..+. ............+.++.+.+ +-+..|.-||++-.|--.-... ...++...+
T Consensus 549 Tic~gtq~ssisissss~~s~ke~~~~~~spe~~~v~~l~~ss---~Slgagl~dgt~a~y~rap~gS---wd~ep~~~~ 622 (925)
T KOG3522|consen 549 TICLGTQTSSISISSSSLDSIKEVTSEPPSPEHESVKLLLFSS---GSLGAGLIDGTLAVYGRAPSGS---WDGEPNISI 622 (925)
T ss_pred cccccCccceeEEeeccCCcccceeccCCCCchhhhhhhhccc---cccccCccCCccccccCCCCCC---CCCCCcccc
Confidence 46778888999888766222 22233334456677777763 3566677777776664221110 111122222
Q ss_pred hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCe
Q 041325 301 EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNT 380 (450)
Q Consensus 301 ~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~ 380 (450)
.....++.+.++..| ++.++.+|.|.++...+..... .......|...|+++.+.++-+..+-..|.
T Consensus 623 ~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~~~~----------~leahqee~~~Vthm~~~~~gVwvafasG~ 689 (925)
T KOG3522|consen 623 PTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFIRSW----------DLEAHQEEAHSVTHMLYLDNGVWVAFASGD 689 (925)
T ss_pred ccCCccccchhhhhc---eeeeecCCceEEEechhccccc----------hhHHHHhhcceEEEEEeeCCceEEEEcCCC
Confidence 334567788887644 5667789999999988643221 112334566789999999874444444443
Q ss_pred -EEEeeC
Q 041325 381 -IRIWRR 386 (450)
Q Consensus 381 -v~iwd~ 386 (450)
+++++.
T Consensus 690 ~~rlfht 696 (925)
T KOG3522|consen 690 EERLFHT 696 (925)
T ss_pred EEEEecc
Confidence 444443
No 499
>KOG3522 consensus Predicted guanine nucleotide exchange factor [Signal transduction mechanisms]
Probab=69.44 E-value=44 Score=33.41 Aligned_cols=149 Identities=11% Similarity=0.089 Sum_probs=83.6
Q ss_pred CCEEEEeeCCCcEEEecCCCC-CceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEe
Q 041325 85 GKLLYGGSSNGEIRAWNRDPN-NYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYS 163 (450)
Q Consensus 85 ~~~l~tgs~dg~v~vw~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 163 (450)
-..+..|+.+|.+.++.-..+ ........ .......+.++.++...+..|.-||++-.+--..... +
T Consensus 547 ~PTic~gtq~ssisissss~~s~ke~~~~~---------~spe~~~v~~l~~ss~Slgagl~dgt~a~y~rap~gS--w- 614 (925)
T KOG3522|consen 547 HPTICLGTQTSSISISSSSLDSIKEVTSEP---------PSPEHESVKLLLFSSGSLGAGLIDGTLAVYGRAPSGS--W- 614 (925)
T ss_pred CCcccccCccceeEEeeccCCcccceeccC---------CCCchhhhhhhhccccccccCccCCccccccCCCCCC--C-
Confidence 345667788888888865522 11111111 1233457888888877788888888776654322200 0
Q ss_pred ccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCe
Q 041325 164 TSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFR 243 (450)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 243 (450)
.. .+......-..+|...++..| ++-++.+|.|.++...+..
T Consensus 615 --------------d~---------------------ep~~~~~~g~lPvrsla~~ed---~~was~gG~V~vi~~tt~~ 656 (925)
T KOG3522|consen 615 --------------DG---------------------EPNISIPTGSLPVRSLAFQED---FVWASEGGCVHVIPSTTFI 656 (925)
T ss_pred --------------CC---------------------CCccccccCCccccchhhhhc---eeeeecCCceEEEechhcc
Confidence 00 000001112336777777544 5667779999999988765
Q ss_pred EEEEee--cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc
Q 041325 244 CLESVK--NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR 285 (450)
Q Consensus 244 ~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 285 (450)
...... ..|...|+++... +.+..++-.....+++++.++
T Consensus 657 ~~~~leahqee~~~Vthm~~~--~~gVwvafasG~~~rlfhtet 698 (925)
T KOG3522|consen 657 RSWDLEAHQEEAHSVTHMLYL--DNGVWVAFASGDEERLFHTET 698 (925)
T ss_pred ccchhHHHHhhcceEEEEEee--CCceEEEEcCCCEEEEecccc
Confidence 554443 1355678888887 555544444444566665443
No 500
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=67.53 E-value=17 Score=19.96 Aligned_cols=27 Identities=11% Similarity=0.025 Sum_probs=22.7
Q ss_pred EEEEEeCCCcEEEEecCCCeEEEEeec
Q 041325 224 LLYSTSWDRTFKIWRTSDFRCLESVKN 250 (450)
Q Consensus 224 ~l~~~~~dg~i~iwd~~~~~~~~~~~~ 250 (450)
.+..++.+|.|.-.|.++|+.+-.++.
T Consensus 2 ~v~~~~~~g~l~AlD~~TG~~~W~~~~ 28 (38)
T PF01011_consen 2 RVYVGTPDGYLYALDAKTGKVLWKFQT 28 (38)
T ss_dssp EEEEETTTSEEEEEETTTTSEEEEEES
T ss_pred EEEEeCCCCEEEEEECCCCCEEEeeeC
Confidence 355668999999999999999988873
Done!