Query 041325
Match_columns 450
No_of_seqs 711 out of 3821
Neff 11.7
Searched_HMMs 29240
Date Mon Mar 25 09:49:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041325.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041325hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyh_C Platelet-activating fac 100.0 1.1E-48 3.8E-53 359.4 36.6 286 64-450 99-410 (410)
2 3ow8_A WD repeat-containing pr 100.0 4E-48 1.4E-52 343.4 35.6 293 58-449 17-319 (321)
3 1got_B GT-beta; complex (GTP-b 100.0 1.1E-46 3.9E-51 337.5 38.4 290 63-448 45-340 (340)
4 4gqb_B Methylosome protein 50; 100.0 2.5E-47 8.7E-52 340.6 32.4 294 73-450 28-330 (344)
5 2pbi_B Guanine nucleotide-bind 100.0 6.4E-46 2.2E-50 334.1 38.9 293 64-448 55-354 (354)
6 4g56_B MGC81050 protein; prote 100.0 1.9E-46 6.4E-51 337.8 34.6 289 73-450 40-342 (357)
7 2ynn_A Coatomer subunit beta'; 100.0 1.9E-45 6.4E-50 324.2 35.5 287 64-449 4-300 (304)
8 3fm0_A Protein CIAO1; WDR39,SG 100.0 4.1E-45 1.4E-49 327.9 38.0 317 62-450 4-334 (345)
9 1nr0_A Actin interacting prote 100.0 1.1E-44 3.7E-49 349.9 42.1 370 11-450 147-610 (611)
10 3iz6_a 40S ribosomal protein R 100.0 4.4E-46 1.5E-50 338.8 30.4 309 58-450 51-374 (380)
11 2hes_X YDR267CP; beta-propelle 100.0 8E-45 2.7E-49 324.0 35.6 309 62-450 3-327 (330)
12 4ery_A WD repeat-containing pr 100.0 2.2E-44 7.6E-49 319.2 37.7 289 61-450 11-311 (312)
13 3frx_A Guanine nucleotide-bind 100.0 1.5E-44 5.2E-49 320.6 32.4 292 61-450 5-316 (319)
14 1erj_A Transcriptional repress 100.0 1.8E-43 6.1E-48 323.2 38.7 315 73-450 62-388 (393)
15 2xzm_R RACK1; ribosome, transl 100.0 9.1E-44 3.1E-48 319.2 35.6 298 62-450 10-339 (343)
16 2ymu_A WD-40 repeat protein; u 100.0 4.7E-43 1.6E-47 337.6 41.1 348 11-448 221-577 (577)
17 4aow_A Guanine nucleotide-bind 100.0 7.6E-43 2.6E-47 313.3 36.5 305 59-450 24-336 (340)
18 1nr0_A Actin interacting prote 100.0 6.1E-43 2.1E-47 337.7 37.5 319 13-450 20-354 (611)
19 4gqb_B Methylosome protein 50; 100.0 6.9E-42 2.4E-46 305.5 30.5 244 73-389 80-332 (344)
20 1vyh_C Platelet-activating fac 100.0 4.1E-42 1.4E-46 315.6 29.0 256 53-387 130-410 (410)
21 1sq9_A Antiviral protein SKI8; 100.0 1.3E-41 4.6E-46 312.0 32.1 320 64-450 7-394 (397)
22 3dm0_A Maltose-binding peripla 100.0 5.4E-41 1.8E-45 329.4 38.0 292 64-450 373-692 (694)
23 3zwl_B Eukaryotic translation 100.0 2E-40 6.9E-45 300.9 38.1 292 59-450 16-345 (369)
24 1gxr_A ESG1, transducin-like e 100.0 3.4E-40 1.2E-44 295.6 38.7 320 13-450 11-336 (337)
25 3ei3_B DNA damage-binding prot 100.0 1E-40 3.5E-45 304.5 35.8 301 61-450 61-381 (383)
26 3odt_A Protein DOA1; ubiquitin 100.0 2.6E-40 8.8E-45 293.2 36.9 285 61-450 6-295 (313)
27 2ynn_A Coatomer subunit beta'; 100.0 7.1E-41 2.4E-45 295.0 32.5 244 122-450 8-258 (304)
28 2ymu_A WD-40 repeat protein; u 100.0 4.5E-40 1.5E-44 316.8 40.6 319 62-449 210-537 (577)
29 3k26_A Polycomb protein EED; W 100.0 4.6E-40 1.6E-44 298.3 36.3 300 73-450 16-365 (366)
30 3v7d_B Cell division control p 100.0 8.8E-40 3E-44 306.2 38.9 281 65-450 113-420 (464)
31 2ovr_B FBW7, F-BOX/WD repeat p 100.0 4.4E-40 1.5E-44 306.3 36.6 289 58-450 144-441 (445)
32 2pm9_A Protein WEB1, protein t 100.0 1.2E-41 3.9E-46 314.4 24.8 351 12-450 13-413 (416)
33 2ovr_B FBW7, F-BOX/WD repeat p 100.0 1.2E-39 4.2E-44 303.3 38.5 278 64-450 109-390 (445)
34 3gre_A Serine/threonine-protei 100.0 8E-41 2.7E-45 310.7 30.4 323 59-448 48-437 (437)
35 1p22_A F-BOX/WD-repeat protein 100.0 2.5E-40 8.6E-45 306.8 31.2 279 73-450 131-413 (435)
36 1k8k_C P40, ARP2/3 complex 41 100.0 4.3E-40 1.5E-44 299.2 32.0 297 73-450 6-360 (372)
37 4e54_B DNA damage-binding prot 100.0 6.8E-41 2.3E-45 310.4 26.9 307 62-450 108-429 (435)
38 3ow8_A WD repeat-containing pr 100.0 6E-40 2E-44 290.9 31.6 242 66-387 73-320 (321)
39 1got_B GT-beta; complex (GTP-b 100.0 5.9E-40 2E-44 293.9 30.9 277 13-385 57-340 (340)
40 3i2n_A WD repeat-containing pr 100.0 8.6E-40 2.9E-44 295.5 30.7 298 66-450 11-352 (357)
41 4g56_B MGC81050 protein; prote 100.0 5.3E-40 1.8E-44 295.7 28.1 288 13-389 44-344 (357)
42 1r5m_A SIR4-interacting protei 100.0 1.4E-39 4.9E-44 301.1 31.1 299 73-450 106-424 (425)
43 1r5m_A SIR4-interacting protei 100.0 2.4E-39 8.3E-44 299.6 32.4 296 64-450 34-360 (425)
44 3dwl_C Actin-related protein 2 100.0 1.7E-40 6E-45 302.3 21.9 304 73-449 9-377 (377)
45 4h5i_A Guanine nucleotide-exch 100.0 6.9E-39 2.3E-43 289.2 31.1 299 75-449 14-341 (365)
46 1pgu_A Actin interacting prote 100.0 4.1E-38 1.4E-42 305.5 38.4 329 57-450 187-613 (615)
47 2j04_B YDR362CP, TAU91; beta p 100.0 3E-39 1E-43 302.5 27.8 304 74-450 132-516 (524)
48 4a11_B DNA excision repair pro 100.0 7.8E-38 2.7E-42 287.9 35.9 316 60-450 30-364 (408)
49 2hes_X YDR267CP; beta-propelle 100.0 2.9E-38 9.9E-43 281.6 31.3 258 122-449 9-278 (330)
50 3vl1_A 26S proteasome regulato 100.0 3E-38 1E-42 291.9 31.8 329 15-450 60-418 (420)
51 2pm9_A Protein WEB1, protein t 100.0 2.8E-39 9.5E-44 298.4 24.5 287 74-450 11-336 (416)
52 4aez_A CDC20, WD repeat-contai 100.0 1.3E-37 4.3E-42 285.5 34.7 288 64-450 80-379 (401)
53 4gga_A P55CDC, cell division c 100.0 9.2E-38 3.2E-42 288.1 33.8 288 65-449 93-393 (420)
54 2pm7_B Protein transport prote 100.0 5.1E-38 1.7E-42 275.8 30.1 254 122-450 4-284 (297)
55 2pm7_B Protein transport prote 100.0 1.3E-37 4.5E-42 273.1 32.0 252 73-388 7-285 (297)
56 2pbi_B Guanine nucleotide-bind 100.0 1.6E-37 5.4E-42 279.4 32.1 279 13-385 66-354 (354)
57 3frx_A Guanine nucleotide-bind 100.0 1.1E-37 3.7E-42 276.5 29.6 291 8-388 14-317 (319)
58 1erj_A Transcriptional repress 100.0 1.1E-37 3.8E-42 284.8 30.5 243 76-388 124-389 (393)
59 3sfz_A APAF-1, apoptotic pepti 100.0 2E-37 6.8E-42 323.8 36.2 340 55-450 639-1115(1249)
60 4ggc_A P55CDC, cell division c 100.0 9.2E-37 3.1E-41 271.0 35.1 290 65-450 13-314 (318)
61 3fm0_A Protein CIAO1; WDR39,SG 100.0 2.6E-37 8.9E-42 277.2 31.5 257 122-449 10-281 (345)
62 3vl1_A 26S proteasome regulato 100.0 2.8E-38 9.5E-43 292.1 25.8 274 78-450 59-364 (420)
63 3bg1_A Protein SEC13 homolog; 100.0 4.2E-38 1.4E-42 278.8 24.5 254 122-449 8-291 (316)
64 3mkq_A Coatomer beta'-subunit; 100.0 5.8E-37 2E-41 307.1 34.9 287 64-449 4-300 (814)
65 3iz6_a 40S ribosomal protein R 100.0 5.3E-38 1.8E-42 285.6 24.5 270 55-388 90-375 (380)
66 4ery_A WD repeat-containing pr 100.0 8.7E-37 3E-41 270.3 31.5 276 13-387 25-311 (312)
67 3sfz_A APAF-1, apoptotic pepti 100.0 2.5E-36 8.4E-41 315.6 39.4 336 70-450 610-1033(1249)
68 2xzm_R RACK1; ribosome, transl 100.0 2.3E-36 7.7E-41 271.1 32.4 295 13-389 23-341 (343)
69 1gxr_A ESG1, transducin-like e 100.0 1.1E-36 3.9E-41 272.7 29.9 281 73-450 7-295 (337)
70 3bg1_A Protein SEC13 homolog; 100.0 1.9E-37 6.6E-42 274.5 24.2 251 73-388 11-293 (316)
71 3dw8_B Serine/threonine-protei 100.0 3.7E-36 1.3E-40 280.2 34.0 339 73-449 26-444 (447)
72 2oaj_A Protein SNI1; WD40 repe 100.0 4.2E-36 1.4E-40 300.2 34.9 394 13-449 100-659 (902)
73 2oaj_A Protein SNI1; WD40 repe 100.0 2E-36 6.9E-41 302.4 32.3 211 72-340 14-247 (902)
74 3f3f_A Nucleoporin SEH1; struc 100.0 1E-36 3.5E-41 274.2 27.4 300 67-450 5-336 (351)
75 3v7d_B Cell division control p 100.0 2.4E-35 8.2E-40 276.1 37.2 315 51-448 140-460 (464)
76 1yfq_A Cell cycle arrest prote 100.0 2.2E-36 7.5E-41 271.5 28.9 270 73-443 9-315 (342)
77 3mkq_A Coatomer beta'-subunit; 100.0 6.7E-36 2.3E-40 299.4 33.4 331 8-449 10-384 (814)
78 3mmy_A MRNA export factor; mRN 100.0 6.4E-36 2.2E-40 271.1 29.6 288 62-448 28-343 (368)
79 1pgu_A Actin interacting prote 100.0 2.3E-35 7.8E-40 286.2 34.2 284 73-450 16-327 (615)
80 4gga_A P55CDC, cell division c 100.0 1.5E-35 5.1E-40 273.4 30.8 260 53-389 125-396 (420)
81 4aez_A CDC20, WD repeat-contai 100.0 2E-35 6.8E-40 270.9 30.5 262 52-389 112-381 (401)
82 1p22_A F-BOX/WD-repeat protein 100.0 1E-35 3.4E-40 275.9 27.6 264 52-389 152-415 (435)
83 3jrp_A Fusion protein of prote 100.0 3.1E-35 1.1E-39 267.7 30.0 259 64-388 2-287 (379)
84 2aq5_A Coronin-1A; WD40 repeat 100.0 4.4E-35 1.5E-39 268.9 28.3 290 76-449 35-340 (402)
85 3jrp_A Fusion protein of prote 100.0 1.1E-34 3.8E-39 264.1 30.0 256 122-450 6-286 (379)
86 3dwl_C Actin-related protein 2 100.0 1.2E-35 4E-40 270.5 22.7 295 12-386 12-377 (377)
87 3dm0_A Maltose-binding peripla 100.0 2.9E-34 9.9E-39 281.7 33.1 294 13-387 384-692 (694)
88 2j04_B YDR362CP, TAU91; beta p 100.0 1.4E-35 4.8E-40 277.7 22.0 267 67-388 201-517 (524)
89 3k26_A Polycomb protein EED; W 100.0 1.2E-34 4.2E-39 262.5 26.3 269 122-450 13-317 (366)
90 4h5i_A Guanine nucleotide-exch 100.0 6.4E-34 2.2E-38 256.7 30.5 299 14-389 17-344 (365)
91 1sq9_A Antiviral protein SKI8; 100.0 2.9E-34 9.8E-39 263.2 27.8 247 122-450 11-321 (397)
92 4aow_A Guanine nucleotide-bind 100.0 1.7E-33 5.7E-38 252.4 32.0 290 13-389 40-338 (340)
93 3vu4_A KMHSV2; beta-propeller 100.0 5.5E-34 1.9E-38 256.4 28.4 293 60-449 6-334 (355)
94 1k8k_C P40, ARP2/3 complex 41 100.0 1.4E-33 4.8E-38 256.2 31.3 260 123-450 4-273 (372)
95 3lrv_A PRE-mRNA-splicing facto 100.0 8.9E-34 3E-38 254.3 28.6 271 84-447 47-329 (343)
96 3gre_A Serine/threonine-protei 100.0 3.1E-34 1.1E-38 266.4 25.5 246 124-450 60-358 (437)
97 3zwl_B Eukaryotic translation 100.0 2.8E-33 9.6E-38 253.8 31.0 286 13-389 34-347 (369)
98 4ggc_A P55CDC, cell division c 100.0 2.9E-33 9.9E-38 248.4 30.4 266 47-388 39-315 (318)
99 2xyi_A Probable histone-bindin 100.0 1.3E-33 4.4E-38 261.1 28.9 267 121-450 122-409 (430)
100 3odt_A Protein DOA1; ubiquitin 100.0 2.6E-33 8.9E-38 248.1 29.8 275 12-389 19-297 (313)
101 2j04_A TAU60, YPL007P, hypothe 100.0 1.7E-34 5.8E-39 263.5 21.5 269 73-449 13-295 (588)
102 4gq1_A NUP37; propeller, trans 100.0 1.2E-33 4.1E-38 257.8 26.3 249 140-449 104-387 (393)
103 3i2n_A WD repeat-containing pr 100.0 1.5E-33 5.1E-38 254.5 25.9 269 59-388 50-353 (357)
104 3ei3_B DNA damage-binding prot 100.0 3E-33 1E-37 255.1 27.6 277 12-388 74-382 (383)
105 2vdu_B TRNA (guanine-N(7)-)-me 100.0 1.8E-32 6.1E-37 255.2 33.2 303 76-449 5-389 (450)
106 3jro_A Fusion protein of prote 100.0 2.1E-33 7.3E-38 276.9 25.0 257 67-389 3-286 (753)
107 2xyi_A Probable histone-bindin 100.0 1.6E-32 5.4E-37 253.8 28.1 271 73-389 126-411 (430)
108 3jro_A Fusion protein of prote 100.0 2.7E-33 9.3E-38 276.2 23.8 256 122-450 4-284 (753)
109 2w18_A PALB2, fancn, partner a 100.0 1.8E-32 6.1E-37 235.0 25.1 296 62-450 24-356 (356)
110 1yfq_A Cell cycle arrest prote 100.0 3.1E-32 1E-36 244.4 27.3 254 124-450 8-281 (342)
111 3dw8_B Serine/threonine-protei 100.0 2.2E-32 7.5E-37 254.7 25.6 262 125-450 26-372 (447)
112 4e54_B DNA damage-binding prot 100.0 3.2E-32 1.1E-36 252.2 25.7 206 123-389 115-328 (435)
113 2aq5_A Coronin-1A; WD40 repeat 100.0 8.9E-32 3E-36 246.9 27.1 242 129-450 36-298 (402)
114 2j04_A TAU60, YPL007P, hypothe 100.0 1.4E-33 4.8E-38 257.4 14.1 310 13-440 17-350 (588)
115 4a11_B DNA excision repair pro 100.0 2.4E-31 8.3E-36 244.5 27.5 329 11-449 43-403 (408)
116 3mmy_A MRNA export factor; mRN 100.0 1.4E-30 4.9E-35 235.9 28.7 247 123-450 35-303 (368)
117 1l0q_A Surface layer protein; 100.0 1.3E-29 4.4E-34 231.7 33.3 262 85-450 2-274 (391)
118 3bws_A Protein LP49; two-domai 100.0 1.7E-29 5.7E-34 234.3 33.1 286 64-450 114-431 (433)
119 2vdu_B TRNA (guanine-N(7)-)-me 100.0 6.8E-30 2.3E-34 237.7 28.3 282 128-449 5-337 (450)
120 3vu4_A KMHSV2; beta-propeller 100.0 2.1E-29 7.1E-34 226.5 28.1 242 123-450 15-270 (355)
121 4gq1_A NUP37; propeller, trans 100.0 2.5E-30 8.6E-35 235.9 21.9 232 84-387 100-388 (393)
122 1l0q_A Surface layer protein; 100.0 4.6E-28 1.6E-32 221.4 35.9 302 54-449 13-340 (391)
123 3f3f_A Nucleoporin SEH1; struc 100.0 3E-29 1E-33 225.4 23.3 226 205-450 6-248 (351)
124 3lrv_A PRE-mRNA-splicing facto 100.0 1.3E-29 4.4E-34 227.2 20.7 224 138-449 49-290 (343)
125 2w18_A PALB2, fancn, partner a 100.0 3.8E-27 1.3E-31 202.1 24.4 157 206-386 174-355 (356)
126 3bws_A Protein LP49; two-domai 100.0 1.3E-26 4.3E-31 214.9 29.5 251 56-387 147-431 (433)
127 2hqs_A Protein TOLB; TOLB, PAL 100.0 3.7E-26 1.3E-30 209.5 28.0 272 76-449 63-385 (415)
128 2hqs_A Protein TOLB; TOLB, PAL 99.9 4.1E-25 1.4E-29 202.5 28.1 273 55-420 95-410 (415)
129 1nir_A Nitrite reductase; hemo 99.9 5.8E-25 2E-29 207.6 29.2 284 78-450 142-457 (543)
130 1nir_A Nitrite reductase; hemo 99.9 1.2E-23 4.3E-28 198.5 28.9 314 56-450 162-513 (543)
131 3u4y_A Uncharacterized protein 99.9 1E-22 3.6E-27 181.4 28.0 275 85-450 10-303 (331)
132 1ri6_A Putative isomerase YBHE 99.9 2.7E-22 9.2E-27 179.6 28.9 276 87-449 7-306 (343)
133 2ecf_A Dipeptidyl peptidase IV 99.9 9.6E-23 3.3E-27 201.8 25.2 286 75-449 36-411 (741)
134 1k32_A Tricorn protease; prote 99.9 1.6E-22 5.4E-27 207.0 25.9 370 7-449 48-500 (1045)
135 2ojh_A Uncharacterized protein 99.9 1E-22 3.5E-27 178.3 20.4 254 90-442 17-293 (297)
136 2ecf_A Dipeptidyl peptidase IV 99.9 3.9E-22 1.4E-26 197.4 24.1 288 76-449 109-457 (741)
137 1pby_B Quinohemoprotein amine 99.9 1.2E-21 4.1E-26 174.9 24.8 266 86-450 2-309 (337)
138 2oit_A Nucleoporin 214KDA; NH2 99.9 3.2E-22 1.1E-26 183.9 20.6 166 208-389 90-279 (434)
139 3vgz_A Uncharacterized protein 99.9 2.1E-20 7.3E-25 168.0 31.2 266 74-420 39-326 (353)
140 3hfq_A Uncharacterized protein 99.9 2.3E-20 7.7E-25 167.4 30.6 269 93-449 14-315 (347)
141 1k32_A Tricorn protease; prote 99.9 1.4E-20 4.8E-25 192.6 30.3 320 66-450 45-460 (1045)
142 1ri6_A Putative isomerase YBHE 99.9 3.8E-20 1.3E-24 165.6 29.4 276 73-420 35-335 (343)
143 1xfd_A DIP, dipeptidyl aminope 99.9 1.5E-21 5E-26 192.9 21.1 282 77-449 18-391 (723)
144 2z3z_A Dipeptidyl aminopeptida 99.9 9.1E-21 3.1E-25 186.6 25.4 286 76-450 82-434 (706)
145 3o4h_A Acylamino-acid-releasin 99.9 7.9E-21 2.7E-25 182.6 23.9 263 75-449 21-313 (582)
146 2z3z_A Dipeptidyl aminopeptida 99.9 5E-21 1.7E-25 188.5 22.1 269 81-420 31-368 (706)
147 2oit_A Nucleoporin 214KDA; NH2 99.9 6.5E-21 2.2E-25 175.2 19.8 203 211-450 37-277 (434)
148 3u4y_A Uncharacterized protein 99.9 1.2E-19 4.3E-24 161.5 27.5 260 56-388 23-304 (331)
149 2ojh_A Uncharacterized protein 99.9 2.7E-20 9.2E-25 162.8 20.4 242 59-379 28-293 (297)
150 1xfd_A DIP, dipeptidyl aminope 99.9 8.6E-20 2.9E-24 180.2 26.0 291 57-420 41-422 (723)
151 1z68_A Fibroblast activation p 99.8 1.9E-19 6.6E-24 177.5 24.5 275 80-449 20-389 (719)
152 3vgz_A Uncharacterized protein 99.8 9.6E-19 3.3E-23 157.2 26.5 242 126-450 39-302 (353)
153 3scy_A Hypothetical bacterial 99.8 7.8E-18 2.7E-22 151.7 32.1 278 93-449 25-335 (361)
154 3hfq_A Uncharacterized protein 99.8 4.8E-18 1.6E-22 152.2 27.2 259 73-387 37-316 (347)
155 1jmx_B Amine dehydrogenase; ox 99.8 1.7E-18 5.8E-23 155.3 22.9 269 84-450 10-324 (349)
156 3o4h_A Acylamino-acid-releasin 99.8 1.8E-19 6.3E-24 173.1 17.1 228 127-449 21-274 (582)
157 3scy_A Hypothetical bacterial 99.8 6.5E-17 2.2E-21 145.7 31.4 281 74-416 48-360 (361)
158 3pe7_A Oligogalacturonate lyas 99.8 8.9E-18 3E-22 153.0 25.9 287 61-449 18-380 (388)
159 1pby_B Quinohemoprotein amine 99.8 6E-18 2.1E-22 150.8 22.9 253 57-389 15-311 (337)
160 1jof_A Carboxy-CIS,CIS-muconat 99.8 4.5E-17 1.5E-21 146.8 25.0 278 87-449 4-339 (365)
161 1z68_A Fibroblast activation p 99.8 7E-18 2.4E-22 166.4 21.2 305 58-449 41-441 (719)
162 4a5s_A Dipeptidyl peptidase 4 99.7 5.5E-16 1.9E-20 152.9 25.9 242 77-389 18-354 (740)
163 3fvz_A Peptidyl-glycine alpha- 99.7 1E-14 3.4E-19 129.3 29.7 200 209-449 89-320 (329)
164 2oiz_A Aromatic amine dehydrog 99.7 1.9E-15 6.5E-20 135.5 25.0 272 93-450 29-333 (361)
165 1q7f_A NHL, brain tumor CG1071 99.7 1.2E-14 4.1E-19 126.3 28.4 241 125-449 27-278 (286)
166 1jmx_B Amine dehydrogenase; ox 99.7 5.2E-15 1.8E-19 132.4 26.7 247 58-389 26-326 (349)
167 3azo_A Aminopeptidase; POP fam 99.7 8.7E-16 3E-20 150.0 23.1 293 73-448 21-364 (662)
168 3c5m_A Oligogalacturonate lyas 99.7 1.5E-16 5.1E-21 145.2 16.3 286 78-449 38-380 (396)
169 2gop_A Trilobed protease; beta 99.7 9.9E-15 3.4E-19 130.6 27.7 254 77-449 16-329 (347)
170 1jof_A Carboxy-CIS,CIS-muconat 99.7 9.4E-16 3.2E-20 138.2 20.8 252 74-388 38-341 (365)
171 3fvz_A Peptidyl-glycine alpha- 99.7 8.4E-15 2.9E-19 129.8 26.5 251 75-388 23-322 (329)
172 1q7f_A NHL, brain tumor CG1071 99.7 6.9E-14 2.4E-18 121.4 29.8 242 73-388 27-280 (286)
173 4a5s_A Dipeptidyl peptidase 4 99.7 9.3E-15 3.2E-19 144.2 25.8 314 13-421 18-429 (740)
174 2z2n_A Virginiamycin B lyase; 99.7 2.1E-12 7E-17 112.8 36.3 282 67-449 6-293 (299)
175 3azo_A Aminopeptidase; POP fam 99.7 1.5E-14 5.3E-19 141.1 24.5 230 84-389 89-370 (662)
176 2oiz_A Aromatic amine dehydrog 99.7 1.2E-13 4E-18 123.8 27.4 283 59-420 37-360 (361)
177 3pe7_A Oligogalacturonate lyas 99.6 2.9E-14 1E-18 129.6 22.8 241 123-450 26-328 (388)
178 2dg1_A DRP35, lactonase; beta 99.6 7.8E-14 2.7E-18 124.0 24.6 262 76-420 6-292 (333)
179 2dg1_A DRP35, lactonase; beta 99.6 7.5E-13 2.6E-17 117.6 31.0 250 63-378 34-300 (333)
180 3dsm_A Uncharacterized protein 99.6 3E-13 1E-17 119.6 23.8 263 93-449 15-300 (328)
181 1qks_A Cytochrome CD1 nitrite 99.6 3.9E-12 1.3E-16 119.8 31.4 279 84-449 166-475 (567)
182 2bkl_A Prolyl endopeptidase; m 99.6 2.8E-13 9.7E-18 132.6 23.1 281 78-450 72-396 (695)
183 3e5z_A Putative gluconolactona 99.6 1.8E-12 6.1E-17 113.1 25.8 229 123-442 23-278 (296)
184 2xdw_A Prolyl endopeptidase; a 99.6 1.7E-12 5.7E-17 127.6 27.6 242 125-449 122-412 (710)
185 1rwi_B Serine/threonine-protei 99.6 1.8E-12 6E-17 111.5 24.6 235 77-389 25-265 (270)
186 2qc5_A Streptogramin B lactona 99.6 8.2E-11 2.8E-15 102.6 35.3 283 66-449 10-298 (300)
187 1rwi_B Serine/threonine-protei 99.6 1.3E-12 4.5E-17 112.2 23.4 233 129-449 25-262 (270)
188 3no2_A Uncharacterized protein 99.6 1.7E-12 5.8E-17 111.3 23.5 211 137-420 4-225 (276)
189 3e5z_A Putative gluconolactona 99.6 2E-12 6.9E-17 112.7 24.3 243 64-388 18-286 (296)
190 2xdw_A Prolyl endopeptidase; a 99.5 1.5E-12 5.2E-17 127.8 25.3 244 73-389 122-415 (710)
191 2bkl_A Prolyl endopeptidase; m 99.5 4.2E-13 1.4E-17 131.4 20.7 242 73-389 118-398 (695)
192 3dsm_A Uncharacterized protein 99.5 5.8E-12 2E-16 111.4 26.1 236 76-387 44-301 (328)
193 1pjx_A Dfpase, DIISOPROPYLFLUO 99.5 2.1E-11 7.3E-16 107.2 27.7 250 73-388 15-299 (314)
194 3c5m_A Oligogalacturonate lyas 99.5 3E-13 1E-17 123.3 15.9 188 215-449 85-327 (396)
195 3no2_A Uncharacterized protein 99.5 8.3E-12 2.8E-16 107.0 23.2 189 85-341 5-201 (276)
196 2gop_A Trilobed protease; beta 99.5 1E-11 3.6E-16 110.9 23.6 219 76-387 59-330 (347)
197 2mad_H Methylamine dehydrogena 99.4 6.4E-10 2.2E-14 99.6 31.4 282 84-450 31-349 (373)
198 3q7m_A Lipoprotein YFGL, BAMB; 99.4 2.7E-10 9.1E-15 102.9 29.2 291 57-448 67-375 (376)
199 2z2n_A Virginiamycin B lyase; 99.4 7.7E-10 2.6E-14 96.3 31.3 237 125-449 12-253 (299)
200 1yr2_A Prolyl oligopeptidase; 99.4 2.7E-11 9.1E-16 119.5 23.6 281 78-449 111-439 (741)
201 1qks_A Cytochrome CD1 nitrite 99.4 6.2E-10 2.1E-14 104.9 31.1 322 55-450 179-537 (567)
202 3g4e_A Regucalcin; six bladed 99.4 5.8E-10 2E-14 97.0 28.5 225 73-369 10-250 (297)
203 1pjx_A Dfpase, DIISOPROPYLFLUO 99.4 3.9E-10 1.3E-14 99.0 27.3 245 125-449 15-297 (314)
204 1xip_A Nucleoporin NUP159; bet 99.4 5.2E-12 1.8E-16 112.1 14.2 166 212-420 39-226 (388)
205 1xip_A Nucleoporin NUP159; bet 99.4 2.9E-11 1E-15 107.3 16.9 187 77-321 39-230 (388)
206 3q7m_A Lipoprotein YFGL, BAMB; 99.4 2.9E-09 9.9E-14 96.1 30.3 278 80-449 48-335 (376)
207 3g4e_A Regucalcin; six bladed 99.3 6.3E-09 2.2E-13 90.4 31.3 223 126-420 11-254 (297)
208 3sjl_D Methylamine dehydrogena 99.3 8.8E-10 3E-14 97.4 24.8 281 84-450 43-362 (386)
209 3hrp_A Uncharacterized protein 99.3 1.6E-09 5.4E-14 98.5 27.1 258 76-386 131-408 (409)
210 3hrp_A Uncharacterized protein 99.3 1.4E-09 4.7E-14 98.9 25.3 250 128-450 131-409 (409)
211 2qc5_A Streptogramin B lactona 99.3 1.4E-08 4.6E-13 88.4 30.6 237 126-449 18-258 (300)
212 1yr2_A Prolyl oligopeptidase; 99.3 3.6E-10 1.2E-14 111.4 22.2 198 211-449 163-391 (741)
213 1kb0_A Quinohemoprotein alcoho 99.3 3.8E-09 1.3E-13 102.3 27.5 322 58-420 92-532 (677)
214 2ghs_A AGR_C_1268P; regucalcin 99.3 1.3E-08 4.6E-13 89.6 28.8 217 77-368 50-279 (326)
215 3c75_H MADH, methylamine dehyd 99.2 4.7E-09 1.6E-13 94.5 24.7 281 84-450 83-401 (426)
216 3dr2_A Exported gluconolactona 99.2 7.7E-09 2.6E-13 90.3 24.9 228 125-443 42-299 (305)
217 2ghs_A AGR_C_1268P; regucalcin 99.2 5.7E-08 2E-12 85.5 30.3 216 129-420 50-284 (326)
218 1yiq_A Quinohemoprotein alcoho 99.2 8E-09 2.7E-13 100.3 26.4 299 81-420 117-530 (689)
219 3hxj_A Pyrrolo-quinoline quino 99.2 9.8E-10 3.3E-14 97.2 17.2 263 74-449 58-322 (330)
220 3iuj_A Prolyl endopeptidase; h 99.2 2.1E-09 7.1E-14 105.1 20.9 241 73-389 126-406 (693)
221 1yiq_A Quinohemoprotein alcoho 99.2 7.5E-09 2.6E-13 100.5 24.4 213 83-340 68-343 (689)
222 2hz6_A Endoplasmic reticulum t 99.2 8.7E-12 3E-16 111.9 3.6 180 136-389 8-193 (369)
223 1kb0_A Quinohemoprotein alcoho 99.2 1.3E-08 4.3E-13 98.7 25.1 213 83-343 75-354 (677)
224 2mad_H Methylamine dehydrogena 99.1 2.7E-07 9.4E-12 82.5 31.5 261 56-389 50-351 (373)
225 3sjl_D Methylamine dehydrogena 99.1 4.5E-08 1.5E-12 86.6 23.9 285 55-418 61-384 (386)
226 2qe8_A Uncharacterized protein 99.1 5.6E-08 1.9E-12 86.3 24.3 200 209-420 65-303 (343)
227 3hxj_A Pyrrolo-quinoline quino 99.1 1.5E-09 5.2E-14 95.9 13.8 255 80-448 24-281 (330)
228 2hz6_A Endoplasmic reticulum t 99.1 2.3E-11 7.7E-16 109.2 1.6 188 82-341 6-198 (369)
229 1mda_H Methylamine dehydrogena 99.1 1.3E-08 4.6E-13 90.1 19.0 265 96-450 47-345 (368)
230 3dr2_A Exported gluconolactona 99.0 1.2E-07 4.1E-12 82.7 23.2 235 64-380 35-299 (305)
231 3iuj_A Prolyl endopeptidase; h 99.0 2.5E-08 8.7E-13 97.4 20.9 200 209-449 127-357 (693)
232 3nok_A Glutaminyl cyclase; bet 99.0 5.9E-07 2E-11 74.1 24.4 210 53-323 33-253 (268)
233 2iwa_A Glutamine cyclotransfer 99.0 2.5E-07 8.6E-12 77.4 22.3 197 213-449 23-235 (266)
234 2qe8_A Uncharacterized protein 99.0 1.6E-07 5.4E-12 83.4 21.6 252 76-385 17-318 (343)
235 1kv9_A Type II quinohemoprotei 99.0 2.6E-06 8.8E-11 82.5 31.6 292 83-389 64-489 (668)
236 2iwa_A Glutamine cyclotransfer 98.9 1.4E-06 4.8E-11 72.9 24.2 215 61-336 7-238 (266)
237 4a2l_A BT_4663, two-component 98.9 1.4E-05 4.9E-10 79.4 36.1 307 78-420 175-510 (795)
238 1npe_A Nidogen, entactin; glyc 98.9 5.2E-06 1.8E-10 70.7 27.6 254 85-420 1-263 (267)
239 3nol_A Glutamine cyclotransfer 98.9 2.1E-06 7.3E-11 70.9 23.2 204 61-324 29-244 (262)
240 4a2l_A BT_4663, two-component 98.8 6.6E-05 2.2E-09 74.7 37.6 311 75-420 214-555 (795)
241 3c75_H MADH, methylamine dehyd 98.8 1E-06 3.5E-11 79.4 22.1 261 54-340 100-407 (426)
242 3mbr_X Glutamine cyclotransfer 98.8 1.6E-05 5.6E-10 65.0 26.6 202 62-323 8-222 (243)
243 3nol_A Glutamine cyclotransfer 98.8 2.7E-06 9.2E-11 70.3 22.0 177 213-420 45-237 (262)
244 2ad6_A Methanol dehydrogenase 98.8 5.3E-06 1.8E-10 78.6 26.2 284 81-389 111-495 (571)
245 3v9f_A Two-component system se 98.8 0.0001 3.5E-09 73.2 36.6 313 76-420 258-595 (781)
246 2ece_A 462AA long hypothetical 98.7 5E-06 1.7E-10 74.2 22.1 206 84-335 94-352 (462)
247 3mbr_X Glutamine cyclotransfer 98.7 6.9E-06 2.3E-10 67.2 21.0 176 212-420 22-216 (243)
248 3v9f_A Two-component system se 98.7 0.00032 1.1E-08 69.6 36.8 312 76-420 163-507 (781)
249 1flg_A Protein (quinoprotein e 98.7 6.9E-05 2.3E-09 71.1 30.5 78 84-164 67-144 (582)
250 2fp8_A Strictosidine synthase; 98.7 1.9E-05 6.5E-10 69.2 25.0 257 73-388 16-313 (322)
251 2ad6_A Methanol dehydrogenase 98.7 8.9E-06 3.1E-10 77.1 24.0 212 84-342 61-342 (571)
252 3nok_A Glutaminyl cyclase; bet 98.6 4.9E-06 1.7E-10 68.7 18.8 175 213-421 57-248 (268)
253 2ece_A 462AA long hypothetical 98.6 1.9E-05 6.4E-10 70.6 23.7 193 213-420 140-393 (462)
254 1w6s_A Methanol dehydrogenase 98.6 2.5E-05 8.6E-10 74.0 25.6 275 88-389 124-504 (599)
255 1mda_H Methylamine dehydrogena 98.6 6.6E-06 2.3E-10 72.8 20.1 252 57-342 50-353 (368)
256 1fwx_A Nitrous oxide reductase 98.6 5.3E-06 1.8E-10 76.8 19.1 285 88-420 18-400 (595)
257 1npe_A Nidogen, entactin; glyc 98.5 0.00012 4.3E-09 62.0 26.1 197 77-339 37-242 (267)
258 1k3i_A Galactose oxidase precu 98.5 1.4E-05 4.9E-10 77.4 20.8 272 84-440 197-530 (656)
259 2fp8_A Strictosidine synthase; 98.5 0.00026 8.8E-09 61.9 27.1 191 212-449 81-311 (322)
260 1w6s_A Methanol dehydrogenase 98.5 4.8E-05 1.6E-09 72.1 23.1 212 84-342 61-349 (599)
261 3v64_C Agrin; beta propeller, 98.4 0.00086 2.9E-08 59.3 29.4 235 76-389 34-276 (349)
262 3v65_B Low-density lipoprotein 98.4 0.00058 2E-08 61.3 27.3 232 79-389 80-319 (386)
263 3ei3_A DNA damage-binding prot 98.4 0.0032 1.1E-07 64.5 38.2 177 233-449 808-997 (1158)
264 2p4o_A Hypothetical protein; p 98.4 0.00089 3E-08 58.0 31.1 210 59-337 18-243 (306)
265 1fwx_A Nitrous oxide reductase 98.3 7.2E-05 2.5E-09 69.4 18.9 227 79-335 90-361 (595)
266 3qqz_A Putative uncharacterize 98.3 0.0011 3.6E-08 55.1 24.1 196 208-420 24-236 (255)
267 3v65_B Low-density lipoprotein 98.3 0.0018 6.2E-08 58.1 27.7 194 211-448 116-315 (386)
268 1ijq_A LDL receptor, low-densi 98.2 0.0022 7.5E-08 55.8 30.5 230 87-389 3-239 (316)
269 3tc9_A Hypothetical hydrolase; 98.2 0.0014 4.8E-08 59.7 26.0 153 129-335 138-301 (430)
270 3v64_C Agrin; beta propeller, 98.2 0.0029 9.9E-08 55.9 28.3 155 212-388 74-234 (349)
271 1kv9_A Type II quinohemoprotei 98.2 0.00061 2.1E-08 66.0 24.2 103 231-340 177-338 (668)
272 3p5b_L Low density lipoprotein 98.1 0.0041 1.4E-07 56.0 32.1 231 86-389 84-321 (400)
273 3qqz_A Putative uncharacterize 98.1 0.0025 8.7E-08 52.9 26.3 211 73-333 24-251 (255)
274 2p4o_A Hypothetical protein; p 98.1 0.0036 1.2E-07 54.1 25.9 226 128-420 32-270 (306)
275 1ijq_A LDL receptor, low-densi 98.1 0.0037 1.3E-07 54.3 28.1 197 211-448 30-235 (316)
276 3sov_A LRP-6, low-density lipo 98.1 0.0046 1.6E-07 53.7 25.5 155 212-389 80-239 (318)
277 2xe4_A Oligopeptidase B; hydro 98.0 0.00051 1.7E-08 67.6 20.7 117 212-336 175-305 (751)
278 2xbg_A YCF48-like protein; pho 98.0 0.0055 1.9E-07 53.5 30.1 280 74-448 34-319 (327)
279 3m0c_C LDL receptor, low-densi 98.0 0.015 5.3E-07 57.0 29.9 159 211-389 471-633 (791)
280 4hw6_A Hypothetical protein, I 98.0 0.01 3.5E-07 54.0 26.4 154 129-334 140-303 (433)
281 1k3i_A Galactose oxidase precu 97.9 0.00034 1.2E-08 67.8 17.4 75 212-287 244-325 (656)
282 3p5b_L Low density lipoprotein 97.9 0.01 3.5E-07 53.4 28.4 158 210-388 111-277 (400)
283 4hw6_A Hypothetical protein, I 97.9 0.012 3.9E-07 53.7 26.0 125 212-337 229-375 (433)
284 3tc9_A Hypothetical hydrolase; 97.8 0.011 3.6E-07 53.9 23.8 73 212-284 227-300 (430)
285 3amr_A 3-phytase; beta-propell 97.8 0.011 3.7E-07 51.2 21.6 122 212-339 129-268 (355)
286 1n7d_A LDL receptor, low-densi 97.8 0.00022 7.7E-09 69.2 12.4 157 213-389 455-615 (699)
287 3sov_A LRP-6, low-density lipo 97.7 0.02 7E-07 49.6 23.7 198 77-338 36-241 (318)
288 1flg_A Protein (quinoprotein e 97.7 0.0094 3.2E-07 56.5 22.3 76 81-163 113-200 (582)
289 2xn4_A Kelch-like protein 2; s 97.7 0.018 6.1E-07 49.5 22.2 148 221-389 108-277 (302)
290 2xbg_A YCF48-like protein; pho 97.6 0.027 9.2E-07 49.1 28.2 155 210-386 162-320 (327)
291 3m0c_C LDL receptor, low-densi 97.6 0.062 2.1E-06 52.8 27.8 157 210-388 423-589 (791)
292 2xn4_A Kelch-like protein 2; s 97.6 0.026 9E-07 48.5 22.0 148 221-389 61-230 (302)
293 2vpj_A Kelch-like protein 12; 97.6 0.03 1E-06 48.1 24.9 147 221-388 112-278 (301)
294 1zgk_A Kelch-like ECH-associat 97.5 0.033 1.1E-06 48.0 23.5 147 221-388 121-287 (308)
295 3kya_A Putative phosphatase; s 97.5 0.052 1.8E-06 49.8 27.1 120 212-334 187-340 (496)
296 2xzh_A Clathrin heavy chain 1; 97.4 0.043 1.5E-06 46.7 23.2 200 215-450 71-289 (365)
297 3ii7_A Kelch-like protein 7; p 97.4 0.046 1.6E-06 47.0 22.0 148 221-389 55-226 (306)
298 2p9w_A MAL S 1 allergenic prot 97.4 0.047 1.6E-06 46.8 20.7 173 123-335 8-215 (334)
299 3ii7_A Kelch-like protein 7; p 97.4 0.052 1.8E-06 46.7 25.6 147 221-388 101-272 (306)
300 4a0p_A LRP6, LRP-6, low-densit 97.4 0.1 3.5E-06 49.9 29.8 224 87-389 8-238 (628)
301 2xe4_A Oligopeptidase B; hydro 97.3 0.018 6.3E-07 56.6 19.1 154 214-384 224-394 (751)
302 3amr_A 3-phytase; beta-propell 97.3 0.077 2.6E-06 45.9 21.6 197 221-449 39-261 (355)
303 4asc_A Kelch repeat and BTB do 97.2 0.086 3E-06 45.5 21.8 149 220-389 44-222 (315)
304 1bpo_A Protein (clathrin); cla 97.2 0.11 3.8E-06 46.1 24.8 201 214-450 69-288 (494)
305 2vpj_A Kelch-like protein 12; 97.2 0.032 1.1E-06 47.9 17.6 146 221-389 62-232 (301)
306 1n7d_A LDL receptor, low-densi 97.2 0.0024 8.3E-08 62.0 11.3 155 212-388 407-571 (699)
307 2p9w_A MAL S 1 allergenic prot 97.1 0.015 5.1E-07 49.9 14.3 172 252-450 11-214 (334)
308 2uvk_A YJHT; unknown function, 96.9 0.19 6.7E-06 44.2 22.8 23 82-104 17-40 (357)
309 4a0p_A LRP6, LRP-6, low-densit 96.9 0.32 1.1E-05 46.5 27.0 154 212-388 38-197 (628)
310 1zgk_A Kelch-like ECH-associat 96.8 0.083 2.8E-06 45.5 16.7 148 221-389 70-241 (308)
311 3sre_A PON1, serum paraoxonase 96.7 0.26 8.8E-06 43.1 18.6 182 212-420 51-279 (355)
312 3pbp_A Nucleoporin NUP82; beta 96.6 0.17 5.7E-06 44.9 17.1 160 218-384 28-208 (452)
313 2woz_A Kelch repeat and BTB do 96.6 0.3 1E-05 42.1 21.7 150 219-389 54-232 (318)
314 4asc_A Kelch repeat and BTB do 96.5 0.35 1.2E-05 41.7 21.0 109 221-339 98-225 (315)
315 3s94_A LRP-6, low-density lipo 96.5 0.62 2.1E-05 44.4 32.3 200 76-339 40-247 (619)
316 1xi4_A Clathrin heavy chain; a 96.4 0.34 1.2E-05 50.0 19.5 196 215-450 70-288 (1630)
317 2be1_A Serine/threonine-protei 96.3 0.017 5.8E-07 50.1 9.0 127 85-250 10-139 (339)
318 3pbp_A Nucleoporin NUP82; beta 96.3 0.057 2E-06 47.8 12.1 119 212-332 67-209 (452)
319 3kci_A Probable E3 ubiquitin-p 96.2 0.62 2.1E-05 41.6 30.3 169 213-387 107-292 (389)
320 2woz_A Kelch repeat and BTB do 96.2 0.51 1.8E-05 40.6 21.1 109 221-339 109-235 (318)
321 3kya_A Putative phosphatase; s 96.2 0.78 2.7E-05 42.1 19.8 171 212-387 140-340 (496)
322 1bpo_A Protein (clathrin); cla 96.0 0.78 2.7E-05 40.9 23.1 200 86-340 78-294 (494)
323 3ei3_A DNA damage-binding prot 95.8 2 6.9E-05 44.3 39.5 271 79-387 330-635 (1158)
324 2xzh_A Clathrin heavy chain 1; 95.7 0.85 2.9E-05 39.0 24.4 201 85-340 78-295 (365)
325 3qhy_B Beta-lactamase inhibito 95.6 0.86 2.9E-05 38.5 21.5 144 212-388 64-207 (282)
326 2ism_A Putative oxidoreductase 95.6 1.1 3.7E-05 39.3 25.8 26 128-153 31-57 (352)
327 3qhy_B Beta-lactamase inhibito 95.5 0.97 3.3E-05 38.1 21.4 222 77-388 25-246 (282)
328 3ott_A Two-component system se 95.3 2.4 8.1E-05 41.7 36.1 277 75-388 62-352 (758)
329 1tl2_A L10, protein (tachylect 95.3 0.9 3.1E-05 36.3 14.7 138 222-383 4-158 (236)
330 2g8s_A Glucose/sorbosone dehyd 94.8 1.9 6.4E-05 37.8 18.7 110 212-322 19-147 (353)
331 3ott_A Two-component system se 94.7 3.5 0.00012 40.5 35.5 288 76-389 232-546 (758)
332 3sre_A PON1, serum paraoxonase 94.6 2.2 7.4E-05 37.3 23.9 113 212-334 166-297 (355)
333 2zwa_A Leucine carboxyl methyl 94.5 3.6 0.00012 39.9 19.2 155 220-389 396-578 (695)
334 2uvk_A YJHT; unknown function, 94.4 1.2 4.2E-05 38.9 14.6 94 221-325 19-128 (357)
335 2be1_A Serine/threonine-protei 94.2 0.24 8.3E-06 42.9 9.1 119 223-345 11-140 (339)
336 4d9s_A UVB-resistance protein 94.1 3.1 0.00011 37.2 33.8 274 75-388 15-305 (406)
337 3a9g_A Putative uncharacterize 94.0 3 0.0001 36.5 26.1 26 128-153 29-55 (354)
338 2zwa_A Leucine carboxyl methyl 93.6 5.7 0.00019 38.5 19.6 119 220-339 499-639 (695)
339 1tl2_A L10, protein (tachylect 93.6 0.91 3.1E-05 36.3 10.4 110 212-331 42-159 (236)
340 1xi4_A Clathrin heavy chain; a 93.1 2.7 9.1E-05 43.8 15.4 75 254-337 259-333 (1630)
341 1cru_A Protein (soluble quinop 93.1 1.2 4E-05 40.7 12.2 113 211-323 27-162 (454)
342 3s94_A LRP-6, low-density lipo 93.0 6.5 0.00022 37.5 34.5 156 211-388 349-510 (619)
343 3mvd_K Regulator of chromosome 92.3 6.2 0.00021 35.5 31.6 272 76-388 75-374 (423)
344 3mvd_K Regulator of chromosome 92.1 6.4 0.00022 35.4 32.2 266 128-448 75-371 (423)
345 4d9s_A UVB-resistance protein 90.9 8.4 0.00029 34.4 29.4 271 76-388 68-357 (406)
346 2ism_A Putative oxidoreductase 90.3 8.6 0.0003 33.5 24.2 72 75-156 30-114 (352)
347 3das_A Putative oxidoreductase 89.2 10 0.00036 32.9 27.7 250 127-420 31-320 (347)
348 4gq2_M Nucleoporin NUP120; bet 87.5 14 0.00047 37.4 15.1 39 211-249 236-274 (950)
349 3kci_A Probable E3 ubiquitin-p 85.2 19 0.00067 31.7 27.8 272 77-388 54-345 (389)
350 3das_A Putative oxidoreductase 84.7 19 0.00065 31.2 27.0 85 64-156 22-116 (347)
351 1cru_A Protein (soluble quinop 84.7 16 0.00055 33.2 12.8 33 305-337 27-59 (454)
352 2g8s_A Glucose/sorbosone dehyd 83.8 21 0.00072 31.0 23.5 57 76-138 18-76 (353)
353 3f7f_A Nucleoporin NUP120; nuc 83.2 3.6 0.00012 39.4 7.9 82 76-157 222-306 (729)
354 1a12_A RCC1, regulator of chro 83.0 25 0.00086 31.3 31.2 271 75-388 58-365 (413)
355 3of7_A Regulator of chromosome 82.1 30 0.001 31.6 27.4 277 75-388 66-405 (473)
356 3f7f_A Nucleoporin NUP120; nuc 78.4 11 0.00037 36.2 9.3 82 305-388 222-305 (729)
357 2wg3_C Hedgehog-interacting pr 76.9 14 0.00048 33.6 9.6 53 212-264 15-79 (463)
358 3a9g_A Putative uncharacterize 76.6 37 0.0013 29.5 25.9 74 73-156 26-114 (354)
359 4fhn_B Nucleoporin NUP120; pro 73.9 16 0.00056 37.8 10.2 38 212-249 239-276 (1139)
360 4gq2_M Nucleoporin NUP120; bet 69.6 19 0.00066 36.3 9.4 38 305-342 236-273 (950)
361 2wg3_C Hedgehog-interacting pr 66.8 76 0.0026 28.8 14.7 30 305-334 14-44 (463)
362 3s25_A Hypothetical 7-bladed b 64.8 63 0.0022 27.2 20.4 137 217-387 110-254 (302)
363 3sbq_A Nitrous-oxide reductase 63.7 20 0.00069 33.3 7.2 82 253-335 322-408 (638)
364 1a12_A RCC1, regulator of chro 62.2 85 0.0029 27.8 33.6 221 128-388 59-314 (413)
365 3sbq_A Nitrous-oxide reductase 59.8 76 0.0026 29.7 10.2 73 211-286 323-409 (638)
366 3no0_A DNA gyrase subunit A; D 55.4 89 0.003 25.9 24.2 168 210-388 23-196 (276)
367 3l6v_A GYRA, DNA gyrase subuni 50.9 1.3E+02 0.0043 26.4 21.5 160 218-388 3-180 (370)
368 4fhn_B Nucleoporin NUP120; pro 44.5 15 0.00052 38.0 3.7 37 306-342 239-275 (1139)
369 3b7f_A Glycosyl hydrolase, BNR 43.1 1.7E+02 0.0057 25.5 18.1 103 222-331 22-143 (394)
370 1sqj_A OXG-RCBH, oligoxylogluc 41.0 1.2E+02 0.0042 29.8 9.4 63 210-273 14-83 (789)
371 1zi0_A DNA gyrase subunit A; b 40.6 1.7E+02 0.0056 24.7 22.8 204 221-449 2-224 (307)
372 1suu_A DNA gyrase subunit A; t 36.1 2E+02 0.0068 24.3 23.0 207 220-449 6-229 (312)
373 3zwu_A Alkaline phosphatase PH 34.6 1.4E+02 0.0047 28.2 8.1 58 213-270 478-547 (592)
374 2z5e_A Proteasome assembling c 30.0 47 0.0016 23.5 3.2 40 59-100 6-45 (122)
375 4a9v_A PHOX; hydrolase, beta-p 27.8 3E+02 0.01 25.8 8.9 62 211-272 476-549 (592)
376 3b7f_A Glycosyl hydrolase, BNR 26.4 3.2E+02 0.011 23.7 25.3 65 211-276 177-254 (394)
377 3of7_A Regulator of chromosome 25.7 3.7E+02 0.013 24.2 34.7 170 211-387 148-340 (473)
378 3uc1_A DNA gyrase subunit A; D 24.4 3.3E+02 0.011 23.2 20.6 171 211-388 42-228 (327)
379 2cn3_A Xyloglucanase, beta-1,4 24.0 5E+02 0.017 25.1 16.7 109 212-325 24-153 (737)
380 3uc1_A DNA gyrase subunit A; D 23.8 3.4E+02 0.012 23.1 22.3 203 223-448 4-225 (327)
381 2zux_A YESW protein; beta-prop 23.5 4.6E+02 0.016 24.5 16.4 222 84-384 266-528 (591)
382 3s25_A Hypothetical 7-bladed b 22.8 3.4E+02 0.011 22.7 20.7 102 217-337 59-178 (302)
383 3q6k_A 43.2 kDa salivary prote 21.8 4.1E+02 0.014 23.3 20.3 152 233-388 124-306 (381)
No 1
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-48 Score=359.36 Aligned_cols=286 Identities=22% Similarity=0.451 Sum_probs=253.3
Q ss_pred eeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--
Q 041325 64 QCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 139 (450)
.....+. +|..+|++++| ++.+|++|+.||+|+|||+.+++.... +.+|.+.|.+++|+++.
T Consensus 99 ~~~~~l~--gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~------------l~~h~~~V~~v~~~~~~~~ 164 (410)
T 1vyh_C 99 PEKYALS--GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT------------LKGHTDSVQDISFDHSGKL 164 (410)
T ss_dssp SCSCEEE--CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEE------------ECCCSSCEEEEEECTTSSE
T ss_pred CceEeec--ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEE------------EeccCCcEEEEEEcCCCCE
Confidence 3456677 99999999999 789999999999999999999886655 77999999999999776
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS 219 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (450)
|++|+.||+|++||+.+.+ ++. .+.+|...|.+++|+
T Consensus 165 l~sgs~D~~i~iwd~~~~~----------------~~~---------------------------~~~~h~~~V~~v~~~ 201 (410)
T 1vyh_C 165 LASCSADMTIKLWDFQGFE----------------CIR---------------------------TMHGHDHNVSSVSIM 201 (410)
T ss_dssp EEEEETTSCCCEEETTSSC----------------EEE---------------------------CCCCCSSCEEEEEEC
T ss_pred EEEEeCCCeEEEEeCCCCc----------------eeE---------------------------EEcCCCCCEEEEEEe
Confidence 9999999999999998762 222 233688999999999
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhh
Q 041325 220 SDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQT 299 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 299 (450)
|++++|++|+.|+.|++||+.+++++..+. .|...|.++.++++ ..++++|+.|+.|++||+++++ ....
T Consensus 202 p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~-g~~l~s~s~D~~v~vwd~~~~~--------~~~~ 271 (410)
T 1vyh_C 202 PNGDHIVSASRDKTIKMWEVQTGYCVKTFT-GHREWVRMVRPNQD-GTLIASCSNDQTVRVWVVATKE--------CKAE 271 (410)
T ss_dssp SSSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCC--------EEEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcEEEEEe-CCCccEEEEEECCC-CCEEEEEcCCCeEEEEECCCCc--------eeeE
Confidence 999999999999999999999999999988 89999999999984 4489999999999999997765 4556
Q ss_pred HhhcccceEEEEEcCC--------------------CCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCc
Q 041325 300 LEKHKSAVTALALSTD--------------------GTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT 359 (450)
Q Consensus 300 ~~~~~~~i~~l~~~~~--------------------~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (450)
+..|...|.+++|+|+ +.+|++|+.|+.|++||+++++++ ..+.+|.
T Consensus 272 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~-------------~~~~~h~ 338 (410)
T 1vyh_C 272 LREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCL-------------MTLVGHD 338 (410)
T ss_dssp ECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEE-------------EEEECCS
T ss_pred ecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceE-------------EEEECCC
Confidence 7789999999999996 678999999999999999988755 5677899
Q ss_pred cceEEEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEE
Q 041325 360 KAILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYS 437 (450)
Q Consensus 360 ~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s 437 (450)
..|.+++|++ .+|++|+.||.|++||+.++ +++..+.+|...|++++|+|++. +|++
T Consensus 339 ~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~--------~~~~~~~~h~~~v~~l~~~~~~~-------------~l~s 397 (410)
T 1vyh_C 339 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNK--------RCMKTLNAHEHFVTSLDFHKTAP-------------YVVT 397 (410)
T ss_dssp SCEEEEEECSSSSCEEEEETTTEEEEECCTTS--------CCCEEEECCSSCEEEEEECSSSS-------------CEEE
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC--------ceEEEEcCCCCcEEEEEEcCCCC-------------EEEE
Confidence 9999999984 59999999999999999864 66788899999999999999999 8999
Q ss_pred cccCCcEEEEEeC
Q 041325 438 GSLDCEIKIWQIR 450 (450)
Q Consensus 438 ~~~Dg~i~iw~l~ 450 (450)
|+.||+|++|++|
T Consensus 398 gs~D~~i~vW~~r 410 (410)
T 1vyh_C 398 GSVDQTVKVWECR 410 (410)
T ss_dssp EETTSEEEEEC--
T ss_pred EeCCCcEEEEeCC
Confidence 9999999999986
No 2
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=4e-48 Score=343.40 Aligned_cols=293 Identities=20% Similarity=0.273 Sum_probs=252.1
Q ss_pred CCCccceeeeEEeecCCCcceEEEEE------eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceE
Q 041325 58 PAASEHQCSATLKVKGNSSYIPSLAI------AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVK 131 (450)
Q Consensus 58 ~~~~~~~~~~~l~~~~h~~~v~~~~~------d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 131 (450)
...+.+.+.+.++ +|.+.|++++| ++.+|+||+.||+|+||++...+.... ..+.+|...|.
T Consensus 17 ~~~~~g~~~~~~~--~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~----------~~l~gh~~~v~ 84 (321)
T 3ow8_A 17 GTNQYGILFKQEQ--AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQ----------WSLEGHQLGVV 84 (321)
T ss_dssp ----CEEEEEETT--SSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEE----------EEECCCSSCEE
T ss_pred hhhhhhheeeecc--cCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeee----------eeeccCCCCEE
Confidence 3444556666666 99999999999 267999999999999999876653221 23679999999
Q ss_pred EEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecC
Q 041325 132 SLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHH 209 (450)
Q Consensus 132 ~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (450)
+++|+++. +++++.|++|++||+.+++. +. .+..|
T Consensus 85 ~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~----------------~~---------------------------~~~~~ 121 (321)
T 3ow8_A 85 SVDISHTLPIAASSSLDAHIRLWDLENGKQ----------------IK---------------------------SIDAG 121 (321)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTTEE----------------EE---------------------------EEECC
T ss_pred EEEECCCCCEEEEEeCCCcEEEEECCCCCE----------------EE---------------------------EEeCC
Confidence 99999876 99999999999999998732 21 22356
Q ss_pred CCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhh
Q 041325 210 VDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQ 289 (450)
Q Consensus 210 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 289 (450)
...+.+++|+|++++|++|+.||.|++||+++++....+. .+...+.+++|+|++ .+|++|+.||.|++||+++++
T Consensus 122 ~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~-~~~~~v~~~~~spdg-~~lasg~~dg~i~iwd~~~~~-- 197 (321)
T 3ow8_A 122 PVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLD-TRGKFILSIAYSPDG-KYLASGAIDGIINIFDIATGK-- 197 (321)
T ss_dssp TTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEE-CSSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE--
T ss_pred CccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEec-CCCceEEEEEECCCC-CEEEEEcCCCeEEEEECCCCc--
Confidence 7788999999999999999999999999999999888887 788899999999954 589999999999999998766
Q ss_pred ccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC
Q 041325 290 VNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS 369 (450)
Q Consensus 290 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 369 (450)
.+..+.+|...|.+++|+|++++|++|+.|+.|++||+++++.. ..+.+|...|.+++|++
T Consensus 198 ------~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~-------------~~~~~h~~~v~~~~~sp 258 (321)
T 3ow8_A 198 ------LLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLA-------------GTLSGHASWVLNVAFCP 258 (321)
T ss_dssp ------EEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEE-------------EEECCCSSCEEEEEECT
T ss_pred ------EEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCccee-------------EEEcCCCCceEEEEECC
Confidence 56677789999999999999999999999999999999987644 56788999999999985
Q ss_pred --CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEE
Q 041325 370 --NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIW 447 (450)
Q Consensus 370 --~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw 447 (450)
.+|++++.|+.|++||+.++ +++..+.+|...|.+++|+|++. +|++++.||.|++|
T Consensus 259 ~~~~l~s~s~D~~v~iwd~~~~--------~~~~~~~~h~~~v~~v~~s~~g~-------------~l~s~~~d~~i~vw 317 (321)
T 3ow8_A 259 DDTHFVSSSSDKSVKVWDVGTR--------TCVHTFFDHQDQVWGVKYNGNGS-------------KIVSVGDDQEIHIY 317 (321)
T ss_dssp TSSEEEEEETTSCEEEEETTTT--------EEEEEECCCSSCEEEEEECTTSS-------------EEEEEETTCCEEEE
T ss_pred CCCEEEEEeCCCcEEEEeCCCC--------EEEEEEcCCCCcEEEEEECCCCC-------------EEEEEeCCCeEEEE
Confidence 49999999999999999874 78889999999999999999999 99999999999999
Q ss_pred Ee
Q 041325 448 QI 449 (450)
Q Consensus 448 ~l 449 (450)
|+
T Consensus 318 d~ 319 (321)
T 3ow8_A 318 DC 319 (321)
T ss_dssp EC
T ss_pred eC
Confidence 96
No 3
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=1.1e-46 Score=337.49 Aligned_cols=290 Identities=19% Similarity=0.313 Sum_probs=249.5
Q ss_pred ceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-
Q 041325 63 HQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK- 139 (450)
Q Consensus 63 ~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~- 139 (450)
.+..++|+ +|.+.|++++| |+++|++|+.||+|++||+.+++.... +..|...|.+++|+|+.
T Consensus 45 ~~~~~~l~--gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~------------~~~~~~~v~~~~~s~~~~ 110 (340)
T 1got_B 45 MRTRRTLR--GHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHA------------IPLRSSWVMTCAYAPSGN 110 (340)
T ss_dssp CCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEE------------EECSSSCEEEEEECTTSS
T ss_pred chhheeec--CCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceE------------eecCCccEEEEEECCCCC
Confidence 35667777 99999999999 799999999999999999998876655 66889999999999877
Q ss_pred -EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEE
Q 041325 140 -LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALAL 218 (450)
Q Consensus 140 -l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 218 (450)
|++|+.|+.|++|++.+.... ......+.+|.+.|.++.|
T Consensus 111 ~l~s~~~d~~v~iw~~~~~~~~---------------------------------------~~~~~~~~~h~~~v~~~~~ 151 (340)
T 1got_B 111 YVACGGLDNICSIYNLKTREGN---------------------------------------VRVSRELAGHTGYLSCCRF 151 (340)
T ss_dssp EEEEEETTCEEEEEETTTCSBS---------------------------------------CEEEEEEECCSSCEEEEEE
T ss_pred EEEEEeCCCeEEEEECccCCCc---------------------------------------ceeEEEecCCCccEEEEEE
Confidence 999999999999999875210 0111234579999999999
Q ss_pred ccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhh
Q 041325 219 SSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQ 298 (450)
Q Consensus 219 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 298 (450)
++++. +++++.|+.|++||+++++.+..+. .|...|.+++|+|+ ..++++|+.||.|++||++++. ...
T Consensus 152 ~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~-~~~l~sg~~d~~v~~wd~~~~~--------~~~ 220 (340)
T 1got_B 152 LDDNQ-IVTSSGDTTCALWDIETGQQTTTFT-GHTGDVMSLSLAPD-TRLFVSGACDASAKLWDVREGM--------CRQ 220 (340)
T ss_dssp EETTE-EEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCS--------EEE
T ss_pred CCCCc-EEEEECCCcEEEEECCCCcEEEEEc-CCCCceEEEEECCC-CCEEEEEeCCCcEEEEECCCCe--------eEE
Confidence 98775 8899999999999999999998887 89999999999984 4589999999999999997765 566
Q ss_pred hHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEe
Q 041325 299 TLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGS 376 (450)
Q Consensus 299 ~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~ 376 (450)
.+.+|...|.+++|+|++++|++|+.||.|++||+++++.+. ......+...|++++|++ ++|++|+
T Consensus 221 ~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~-----------~~~~~~~~~~v~~~~~s~~g~~l~~g~ 289 (340)
T 1got_B 221 TFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELM-----------TYSHDNIICGITSVSFSKSGRLLLAGY 289 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-----------EECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred EEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEE-----------EEccCCcccceEEEEECCCCCEEEEEC
Confidence 677899999999999999999999999999999999876542 112233445799999985 4999999
Q ss_pred CCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 377 SDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 377 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
.||.|++||+.++ ..+..+.+|...|.+++|+|++. +|+||+.||.|+|||
T Consensus 290 ~d~~i~vwd~~~~--------~~~~~~~~h~~~v~~~~~s~dg~-------------~l~s~s~D~~i~iWd 340 (340)
T 1got_B 290 DDFNCNVWDALKA--------DRAGVLAGHDNRVSCLGVTDDGM-------------AVATGSWDSFLKIWN 340 (340)
T ss_dssp TTSEEEEEETTTC--------CEEEEEECCSSCEEEEEECTTSS-------------CEEEEETTSCEEEEC
T ss_pred CCCeEEEEEcccC--------cEeeEeecCCCcEEEEEEcCCCC-------------EEEEEcCCccEEecC
Confidence 9999999999864 67788899999999999999999 899999999999997
No 4
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=2.5e-47 Score=340.57 Aligned_cols=294 Identities=19% Similarity=0.241 Sum_probs=234.1
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeE
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKI 149 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i 149 (450)
.|...|.+++| ||++|++++ |+++++||......... ..............|...|.+++|+++. |++|+.||+|
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~d~~l~~~s~dg~v 105 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDP-CAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAV 105 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSG-GGTTCGGGCSEEEEESSCEEEEEEETTTEEEEEETTSEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccc-cccCCcceeeeeeccCCCEEEEEEeCCCeEEEEECCCEE
Confidence 67788999999 899999887 78889997321110000 0001111112244567789999999877 9999999999
Q ss_pred EEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe
Q 041325 150 RVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS 229 (450)
Q Consensus 150 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 229 (450)
++||+++++... . ......+|.+.|++++|+|++++|++|+
T Consensus 106 ~lWd~~~~~~~~----------------~-----------------------~~~~~~~H~~~V~~v~~spdg~~l~sgs 146 (344)
T 4gqb_B 106 ELWELDENETLI----------------V-----------------------SKFCKYEHDDIVSTVSVLSSGTQAVSGS 146 (344)
T ss_dssp EEEEECTTSSCE----------------E-----------------------EEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred EEEeccCCCcee----------------E-----------------------eeccccCCCCCEEEEEECCCCCEEEEEe
Confidence 999999873211 0 1112347999999999999999999999
Q ss_pred CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhH--hhcccce
Q 041325 230 WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTL--EKHKSAV 307 (450)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~i 307 (450)
.|++|++||+++++++..+. +|...|.+++|++++..++++++.|+.|++||+++++ ....+ ..+...+
T Consensus 147 ~d~~i~iwd~~~~~~~~~~~-~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~--------~~~~~~~~~~~~~~ 217 (344)
T 4gqb_B 147 KDICIKVWDLAQQVVLSSYR-AHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPK--------PASQIGCSAPGYLP 217 (344)
T ss_dssp TTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSS--------CEEECC----CCCE
T ss_pred CCCeEEEEECCCCcEEEEEc-CcCCceEEEEecCCCCCceeeeccccccccccccccc--------eeeeeecceeeccc
Confidence 99999999999999999998 8999999999999777789999999999999998765 22222 3456678
Q ss_pred EEEEEcC-CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC---eEEEEeCCCeEEE
Q 041325 308 TALALST-DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN---LLFSGSSDNTIRI 383 (450)
Q Consensus 308 ~~l~~~~-~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~~~dg~v~i 383 (450)
.+++|+| ++++|++|+.||.|++||+++++++ ..+.+|...|++++|+++ +|++|+.|++|+|
T Consensus 218 ~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~-------------~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~v 284 (344)
T 4gqb_B 218 TSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCV-------------LSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAV 284 (344)
T ss_dssp EEEEECSSCTTEEEEEETTSEEEEEESCC--CC-------------EEEECCSSCEEEEEECSSSSCCEEEEETTSCEEE
T ss_pred eeeeecCCCCcceEEeccCCcEEEEECCCCcEE-------------EEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEE
Confidence 9999999 5678899999999999999988755 567889999999999843 7999999999999
Q ss_pred eeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 384 WRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 384 wd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
||+.++ + +..+.+|.+.|++++|+|+++. +|+|||.||+|++|++.
T Consensus 285 wd~~~~--------~-~~~~~~H~~~V~~v~~sp~~~~------------llas~s~D~~v~~w~v~ 330 (344)
T 4gqb_B 285 LDSSLS--------E-LFRSQAHRDFVRDATWSPLNHS------------LLTTVGWDHQVVHHVVP 330 (344)
T ss_dssp ECTTCC--------E-EEEECCCSSCEEEEEECSSSTT------------EEEEEETTSCEEEEECC
T ss_pred EECCCC--------c-EEEEcCCCCCEEEEEEeCCCCe------------EEEEEcCCCeEEEEECC
Confidence 999874 3 4457899999999999999874 78899999999999973
No 5
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=6.4e-46 Score=334.08 Aligned_cols=293 Identities=21% Similarity=0.310 Sum_probs=250.6
Q ss_pred eeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--
Q 041325 64 QCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 139 (450)
+..++|+ ||...|++++| |+++|+||+.||+|+|||..+++.... +..|...|.+++|+|++
T Consensus 55 ~~~~~l~--gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~------------~~~~~~~v~~~~~sp~g~~ 120 (354)
T 2pbi_B 55 KTRRTLK--GHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHA------------VTMPCTWVMACAYAPSGCA 120 (354)
T ss_dssp CEEEEEE--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE------------EECSSSCCCEEEECTTSSE
T ss_pred EEEEEec--CCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceE------------EecCCCCEEEEEECCCCCE
Confidence 5677788 99999999999 799999999999999999988776554 56788899999999887
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS 219 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (450)
+++|+.|+.+++|++....... .......+..|.+.|.+++|+
T Consensus 121 lasg~~d~~i~v~~~~~~~~~~-------------------------------------~~~~~~~~~~h~~~v~~~~~~ 163 (354)
T 2pbi_B 121 IACGGLDNKCSVYPLTFDKNEN-------------------------------------MAAKKKSVAMHTNYLSACSFT 163 (354)
T ss_dssp EEEESTTSEEEEEECCCCTTCC-------------------------------------SGGGCEEEEECSSCEEEEEEC
T ss_pred EEEeeCCCCEEEEEEecccccc-------------------------------------ccccceeeeccCCcEEEEEEe
Confidence 9999999999999987542100 001122345799999999999
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecC-CcEEEEEcCCCcEEEEeCcchhhhccccchhhh
Q 041325 220 SDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSN-DGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQ 298 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 298 (450)
|++..|++++.|++|++||+++++.+..+. .|...|.++.++|.. ..+|++|+.||.|++||+++++ .+.
T Consensus 164 ~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~--------~~~ 234 (354)
T 2pbi_B 164 NSDMQILTASGDGTCALWDVESGQLLQSFH-GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQ--------CVQ 234 (354)
T ss_dssp SSSSEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCC--------EEE
T ss_pred CCCCEEEEEeCCCcEEEEeCCCCeEEEEEc-CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCc--------EEE
Confidence 999999999999999999999999999988 899999999999854 3589999999999999998766 566
Q ss_pred hHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEe
Q 041325 299 TLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGS 376 (450)
Q Consensus 299 ~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~ 376 (450)
.+..|...|.+++|+|++++|++|+.|+.|++||++.++.+. ......+...+.+++|+ +.+|++|+
T Consensus 235 ~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~-----------~~~~~~~~~~~~~~~~s~~g~~l~~g~ 303 (354)
T 2pbi_B 235 AFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVA-----------IYSKESIIFGASSVDFSLSGRLLFAGY 303 (354)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE-----------EECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred EecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE-----------EEcCCCcccceeEEEEeCCCCEEEEEE
Confidence 677899999999999999999999999999999999876442 11122334568899998 45999999
Q ss_pred CCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 377 SDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 377 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
.|+.|++||+.++ ..+..+.+|...|++++|+|++. +|++|+.||+|+||+
T Consensus 304 ~d~~i~vwd~~~~--------~~~~~l~~h~~~v~~l~~spdg~-------------~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 304 NDYTINVWDVLKG--------SRVSILFGHENRVSTLRVSPDGT-------------AFCSGSWDHTLRVWA 354 (354)
T ss_dssp TTSCEEEEETTTC--------SEEEEECCCSSCEEEEEECTTSS-------------CEEEEETTSEEEEEC
T ss_pred CCCcEEEEECCCC--------ceEEEEECCCCcEEEEEECCCCC-------------EEEEEcCCCCEEecC
Confidence 9999999999874 56778899999999999999999 899999999999996
No 6
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=1.9e-46 Score=337.78 Aligned_cols=289 Identities=18% Similarity=0.212 Sum_probs=234.8
Q ss_pred CCCcceEEEEE--eCCEEEEeeC------CCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEE
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSS------NGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSA 143 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~ 143 (450)
+|...|++++| ||++||+|+. ||.|++|+..++..... ......+|...|.+++|+++. ++++
T Consensus 40 ~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~--------~~~~~~~~~~~V~~~~~s~d~~~l~~ 111 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNES--------LCTAGVQTEAGVTDVAWVSEKGILVA 111 (357)
T ss_dssp CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGG--------GCSEEEECSSCEEEEEEETTTEEEEE
T ss_pred cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCccee--------EecccCCCCCCEEEEEEcCCCCEEEE
Confidence 89999999999 8999999997 78899999877653222 112345788999999999877 8899
Q ss_pred eCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCC
Q 041325 144 HQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGS 223 (450)
Q Consensus 144 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 223 (450)
+.||+|++||+.+++.. .. ......+|.+.|.+++|+|+++
T Consensus 112 s~dg~v~lWd~~~~~~~----------------~~-----------------------~~~~~~~h~~~V~~v~~spdg~ 152 (357)
T 4g56_B 112 SDSGAVELWEILEKESL----------------LV-----------------------NKFAKYEHDDIVKTLSVFSDGT 152 (357)
T ss_dssp ETTSCEEEC------------------------CC-----------------------CCEEECCCSSCEEEEEECSSSS
T ss_pred ECCCEEEEeecccccee----------------EE-----------------------EeeccCCCCCCEEEEEECCCCC
Confidence 99999999999877321 00 1112336899999999999999
Q ss_pred EEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhc
Q 041325 224 LLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKH 303 (450)
Q Consensus 224 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 303 (450)
+|++|+.|+.|++||+++++.+..+. .|...|.+++|+++++.++++++.||.|++||+++++.. .......+
T Consensus 153 ~l~sgs~dg~v~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~------~~~~~~~~ 225 (357)
T 4g56_B 153 QAVSGGKDFSVKVWDLSQKAVLKSYN-AHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPA------TRIDFCAS 225 (357)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCB------CBCCCTTC
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEc-CCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCcee------eeeeeccc
Confidence 99999999999999999999999988 899999999999877778999999999999999876511 11223456
Q ss_pred ccceEEEEEcCC-CCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC---CeEEEEeCCC
Q 041325 304 KSAVTALALSTD-GTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS---NLLFSGSSDN 379 (450)
Q Consensus 304 ~~~i~~l~~~~~-~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg 379 (450)
...+.+++|+|+ +.+|++|+.|+.|++||+++++.+ ..+.+|...|++++|++ .+|++|+.||
T Consensus 226 ~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~-------------~~~~~~~~~v~~l~~sp~~~~~lasgs~D~ 292 (357)
T 4g56_B 226 DTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSA-------------QTSAVHSQNITGLAYSYHSSPFLASISEDC 292 (357)
T ss_dssp CSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGC-------------EEECCCSSCEEEEEECSSSSCCEEEEETTS
T ss_pred cccccchhhhhcccceEEEeecccceeEEECCCCcEe-------------EEEeccceeEEEEEEcCCCCCEEEEEeCCC
Confidence 778999999997 568999999999999999987644 56788999999999984 3799999999
Q ss_pred eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEe-cCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 380 TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVV-DSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 380 ~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+|+|||++++ +++. ..+|...|++|+|+| ++. +|+|||.||+|++|++.
T Consensus 293 ~i~iwd~~~~--------~~~~-~~~H~~~V~~vafsP~d~~-------------~l~s~s~Dg~v~iW~~~ 342 (357)
T 4g56_B 293 TVAVLDADFS--------EVFR-DLSHRDFVTGVAWSPLDHS-------------KFTTVGWDHKVLHHHLP 342 (357)
T ss_dssp CEEEECTTSC--------EEEE-ECCCSSCEEEEEECSSSTT-------------EEEEEETTSCEEEEECC
T ss_pred EEEEEECCCC--------cEeE-ECCCCCCEEEEEEeCCCCC-------------EEEEEcCCCeEEEEECC
Confidence 9999999874 4444 447999999999998 677 99999999999999973
No 7
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.9e-45 Score=324.23 Aligned_cols=287 Identities=17% Similarity=0.299 Sum_probs=243.6
Q ss_pred eeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--
Q 041325 64 QCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 139 (450)
+..++|+ +|.+.|++++| ++++|++|+.||.|++||+.++..... +..|..+|.+++|+++.
T Consensus 4 ~~~~~~~--~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~------------~~~~~~~v~~~~~~~~~~~ 69 (304)
T 2ynn_A 4 DIKKTFS--NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRS------------IQVTETPVRAGKFIARKNW 69 (304)
T ss_dssp CCEEEEE--EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE------------EECCSSCEEEEEEEGGGTE
T ss_pred eeEEeec--CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEE------------eeccCCcEEEEEEeCCCCE
Confidence 5677888 99999999999 899999999999999999998876555 67899999999999766
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS 219 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (450)
|++|+.|++|++||+.+++. ...+.+|.+.|.+++|+
T Consensus 70 l~s~s~d~~i~vwd~~~~~~-------------------------------------------~~~~~~h~~~v~~~~~~ 106 (304)
T 2ynn_A 70 IIVGSDDFRIRVFNYNTGEK-------------------------------------------VVDFEAHPDYIRSIAVH 106 (304)
T ss_dssp EEEEETTSEEEEEETTTCCE-------------------------------------------EEEEECCSSCEEEEEEC
T ss_pred EEEECCCCEEEEEECCCCcE-------------------------------------------EEEEeCCCCcEEEEEEc
Confidence 99999999999999998732 22345799999999999
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCeEE-EEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhh
Q 041325 220 SDGSLLYSTSWDRTFKIWRTSDFRCL-ESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQ 298 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 298 (450)
|++++|++|+.|++|++||++++..+ ..+. +|...|.+++|+|.+..+|++|+.|+.|++||++... ...
T Consensus 107 ~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~--------~~~ 177 (304)
T 2ynn_A 107 PTKPYVLSGSDDLTVKLWNWENNWALEQTFE-GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST--------PNF 177 (304)
T ss_dssp SSSSEEEEEETTSCEEEEEGGGTTEEEEEEC-CCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSS--------CSE
T ss_pred CCCCEEEEECCCCeEEEEECCCCcchhhhhc-ccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCC--------ccc
Confidence 99999999999999999999887444 4454 8999999999998666799999999999999997654 122
Q ss_pred h-HhhcccceEEEEEcC--CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEE
Q 041325 299 T-LEKHKSAVTALALST--DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLF 373 (450)
Q Consensus 299 ~-~~~~~~~i~~l~~~~--~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~ 373 (450)
. ...+...+..+.|+| ++++|++|+.|+.|++||+++++++ ..+.+|...|.+++|+++ +|+
T Consensus 178 ~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~-------------~~~~~h~~~v~~~~~~p~~~~l~ 244 (304)
T 2ynn_A 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV-------------ATLEGHMSNVSFAVFHPTLPIII 244 (304)
T ss_dssp EEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEE-------------EEEECCSSCEEEEEECSSSSEEE
T ss_pred eeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccc-------------eeeCCCCCCEEEEEECCCCCEEE
Confidence 2 234567889999987 7789999999999999999988755 577889999999999865 899
Q ss_pred EEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 374 SGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 374 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+|+.||.|++||+.++ +++..+..|...+.+++|+|++.. .++++|+.|| +.+|++
T Consensus 245 s~s~Dg~i~iWd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~asg~~~g-~~~~~~ 300 (304)
T 2ynn_A 245 SGSEDGTLKIWNSSTY--------KVEKTLNVGLERSWCIATHPTGRK-----------NYIASGFDNG-FTVLSL 300 (304)
T ss_dssp EEETTSCEEEEETTTC--------CEEEEECCSSSSEEEEEECTTCGG-----------GCEEEEETTE-EEEEEC
T ss_pred EEcCCCeEEEEECCCC--------ceeeeccCCCccEEEEEECCCCCc-----------eEEEEecCCc-eEEEEe
Confidence 9999999999999874 778889999999999999998752 1477776665 677765
No 8
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=4.1e-45 Score=327.92 Aligned_cols=317 Identities=22% Similarity=0.338 Sum_probs=245.3
Q ss_pred cceeeeEEeecCCCc-ceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC
Q 041325 62 EHQCSATLKVKGNSS-YIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD 138 (450)
Q Consensus 62 ~~~~~~~l~~~~h~~-~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 138 (450)
..++++++. +|.. .|.+++| ||++||+|+.||+|+|||+.++..... .....+|...|.+++|+|+
T Consensus 4 ~~~~~~~~~--~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~---------~~~~~~h~~~v~~~~~sp~ 72 (345)
T 3fm0_A 4 SLVLLGRVP--AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICK---------SVLSEGHQRTVRKVAWSPC 72 (345)
T ss_dssp CEEEEEEEC--CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEE---------EEECSSCSSCEEEEEECTT
T ss_pred cEEEeeeec--CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceee---------eeeccccCCcEEEEEECCC
Confidence 456788888 9988 9999999 899999999999999999887653322 0123589999999999987
Q ss_pred e--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEE
Q 041325 139 K--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSAL 216 (450)
Q Consensus 139 ~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 216 (450)
. |++|+.|++|++|++..... . ....+.+|.+.|.++
T Consensus 73 g~~l~s~s~D~~v~iw~~~~~~~--------------~---------------------------~~~~~~~h~~~v~~v 111 (345)
T 3fm0_A 73 GNYLASASFDATTCIWKKNQDDF--------------E---------------------------CVTTLEGHENEVKSV 111 (345)
T ss_dssp SSEEEEEETTSCEEEEEECCC-E--------------E---------------------------EEEEECCCSSCEEEE
T ss_pred CCEEEEEECCCcEEEEEccCCCe--------------E---------------------------EEEEccCCCCCceEE
Confidence 6 99999999999999987621 1 122344799999999
Q ss_pred EEccCCCEEEEEeCCCcEEEEecCCCe---EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc
Q 041325 217 ALSSDGSLLYSTSWDRTFKIWRTSDFR---CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 217 ~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 293 (450)
+|+|++++|++|+.|+.|++||+.++. ++..+. .|...|.+++|+|++ .+|++++.|+.|++||.+.++
T Consensus 112 ~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~-~~l~s~s~d~~i~~w~~~~~~------ 183 (345)
T 3fm0_A 112 AWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLN-SHTQDVKHVVWHPSQ-ELLASASYDDTVKLYREEEDD------ 183 (345)
T ss_dssp EECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEEC-CCCSCEEEEEECSSS-SCEEEEETTSCEEEEEEETTE------
T ss_pred EEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEec-CcCCCeEEEEECCCC-CEEEEEeCCCcEEEEEecCCC------
Confidence 999999999999999999999998763 344555 789999999999954 489999999999999986543
Q ss_pred chhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeee--CCCCCCceeeeccccC-CccceEEEEEeC-
Q 041325 294 HSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVD--GDDDSGHMVLKGALRG-HTKAILCLAVVS- 369 (450)
Q Consensus 294 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~v~~~~~~~- 369 (450)
......+.+|...|++++|+|++++|++|+.|+.|++||......... .............+.+ |...|.+++|++
T Consensus 184 ~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~ 263 (345)
T 3fm0_A 184 WVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQL 263 (345)
T ss_dssp EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTT
T ss_pred EEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecC
Confidence 113456678999999999999999999999999999999753321100 0000111112223333 888999999985
Q ss_pred -CeEEEEeCCCeEEEeeCCCCccccCCCcee-EEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEE
Q 041325 370 -NLLFSGSSDNTIRIWRRSSSVTDHQKGYSC-LAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIW 447 (450)
Q Consensus 370 -~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~-~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw 447 (450)
..|++++.|+.|++|+.............. .....+|...|++++|+|++.. +|+||+.||+|++|
T Consensus 264 ~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~------------~laS~s~Dg~v~~W 331 (345)
T 3fm0_A 264 TGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPG------------LLASCSDDGEVAFW 331 (345)
T ss_dssp TCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTT------------EEEEEETTSCEEEE
T ss_pred CCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCce------------EEEEcCCCCcEEEE
Confidence 499999999999999987643221222222 2334689999999999998743 89999999999999
Q ss_pred EeC
Q 041325 448 QIR 450 (450)
Q Consensus 448 ~l~ 450 (450)
+++
T Consensus 332 ~~~ 334 (345)
T 3fm0_A 332 KYQ 334 (345)
T ss_dssp EEC
T ss_pred Eec
Confidence 974
No 9
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.1e-44 Score=349.88 Aligned_cols=370 Identities=19% Similarity=0.288 Sum_probs=270.3
Q ss_pred CcccCCCccCCCCCc-cccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCE
Q 041325 11 CRRNKEPKFQPSSNH-LQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKL 87 (450)
Q Consensus 11 ~~~~~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~ 87 (450)
...+..+.|+|+... +.+.+.+..+.. +...++++++++. +|...|++++| |+++
T Consensus 147 ~~~v~~v~f~p~~~~~l~s~s~D~~v~l--------------------wd~~~~~~~~~l~--~H~~~V~~v~fspdg~~ 204 (611)
T 1nr0_A 147 ARAMNSVDFKPSRPFRIISGSDDNTVAI--------------------FEGPPFKFKSTFG--EHTKFVHSVRYNPDGSL 204 (611)
T ss_dssp SSCEEEEEECSSSSCEEEEEETTSCEEE--------------------EETTTBEEEEEEC--CCSSCEEEEEECTTSSE
T ss_pred CCCceEEEECCCCCeEEEEEeCCCeEEE--------------------EECCCCeEeeeec--cccCceEEEEECCCCCE
Confidence 335556667776553 555555544433 3334567788888 99999999999 7999
Q ss_pred EEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEecc
Q 041325 88 LYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTS 165 (450)
Q Consensus 88 l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~ 165 (450)
||+|+.||+|++||+.+++......... ....+|.+.|.+++|+|++ |++++.|++|++||+.+++.......
T Consensus 205 las~s~D~~i~lwd~~~g~~~~~~~~~~-----~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~ 279 (611)
T 1nr0_A 205 FASTGGDGTIVLYNGVDGTKTGVFEDDS-----LKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPV 279 (611)
T ss_dssp EEEEETTSCEEEEETTTCCEEEECBCTT-----SSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred EEEEECCCcEEEEECCCCcEeeeecccc-----ccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecC
Confidence 9999999999999999887665421100 0012799999999999876 99999999999999998865443322
Q ss_pred CcccccceeeeeeccCCCcceeEeeecCceEEEeecc----eeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 041325 166 GKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHK----KCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSD 241 (450)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 241 (450)
..........+.. .....+....++.+.++... ...+.+|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus 280 ~~~~~~~~~~~~~----~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~ 355 (611)
T 1nr0_A 280 GTRIEDQQLGIIW----TKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDIST 355 (611)
T ss_dssp CSSGGGCEEEEEE----CSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred CCCccceeEEEEE----cCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Confidence 2111110011111 23344445555666665432 335678999999999999999999999999999999987
Q ss_pred CeEEEEeecc----------------------------------------------------------------------
Q 041325 242 FRCLESVKNA---------------------------------------------------------------------- 251 (450)
Q Consensus 242 ~~~~~~~~~~---------------------------------------------------------------------- 251 (450)
++....+...
T Consensus 356 ~~~~~~~~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~ 435 (611)
T 1nr0_A 356 GISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIA 435 (611)
T ss_dssp CCEEECSSCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEE
T ss_pred CceeeecccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEE
Confidence 6554332111
Q ss_pred -----------cccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEE
Q 041325 252 -----------HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLY 320 (450)
Q Consensus 252 -----------~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~ 320 (450)
+...+.+++|+|+ ..++++|+.|+.|++||+..+.. ..... .+|...|++++|+|||++|+
T Consensus 436 ~~~~~~~~~~~~~~~v~~va~spd-g~~lasgs~D~~v~lwd~~~~~~------~~~~~-~~h~~~v~~v~fspdg~~la 507 (611)
T 1nr0_A 436 IYSHGKLTEVPISYNSSCVALSND-KQFVAVGGQDSKVHVYKLSGASV------SEVKT-IVHPAEITSVAFSNNGAFLV 507 (611)
T ss_dssp EEETTEEEEEECSSCEEEEEECTT-SCEEEEEETTSEEEEEEEETTEE------EEEEE-EECSSCEEEEEECTTSSEEE
T ss_pred EEeCCceeeeecCCCceEEEEeCC-CCEEEEeCCCCeEEEEEccCCce------eeeec-cCCCCceEEEEECCCCCEEE
Confidence 1234667888884 44899999999999999865431 01222 56889999999999999999
Q ss_pred EeeCCCcEEEEEcCC-CceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCc
Q 041325 321 SGACDRSILVWERDQ-GNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGY 397 (450)
Q Consensus 321 ~g~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~ 397 (450)
+++.|+.|++||+.+ ++.. .......|...|.+++|+++ +|++|+.|++|++||+..+. .
T Consensus 508 s~s~d~~v~~w~~~~~~~~~-----------~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~------~ 570 (611)
T 1nr0_A 508 ATDQSRKVIPYSVANNFELA-----------HTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS------D 570 (611)
T ss_dssp EEETTSCEEEEEGGGTTEES-----------CCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT------S
T ss_pred EEcCCCCEEEEEcCCCCcee-----------eeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcc------c
Confidence 999999999999987 4322 11123459999999999854 99999999999999998641 0
Q ss_pred eeEEEecCC-CcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 398 SCLAVLEGH-RRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 398 ~~~~~~~~h-~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
..+..+.+| ...|++++|+|++. |++++.|++|++|++.
T Consensus 571 ~~~~~~~~h~~~~v~~v~fs~d~~--------------l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 571 HPIIIKGAHAMSSVNSVIWLNETT--------------IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp CCEEETTSSTTSCEEEEEEEETTE--------------EEEEETTSCEEEEECC
T ss_pred ccchhhccCcccCeeEEEEcCCCE--------------EEEecCCCCEEEEecc
Confidence 122567789 89999999999875 9999999999999974
No 10
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=4.4e-46 Score=338.81 Aligned_cols=309 Identities=17% Similarity=0.296 Sum_probs=252.8
Q ss_pred CCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEE
Q 041325 58 PAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVV 135 (450)
Q Consensus 58 ~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 135 (450)
+......+.++|+ ||.+.|++++| ++++|+||+.||+|+|||+.+++.... +.+|...|.+++|
T Consensus 51 ~~~~~~~~~~~l~--gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~------------~~~h~~~v~~~~~ 116 (380)
T 3iz6_a 51 FNPTDLVCCRTLQ--GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHA------------IKLHCPWVMECAF 116 (380)
T ss_dssp CCCCCCEEEEEEC--CCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEE------------EECCCTTCCCCEE
T ss_pred cccceeEEeeccc--ccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceE------------EecCCCCEEEEEE
Confidence 3444567888888 99999999999 799999999999999999988876555 6789999999999
Q ss_pred eCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCce
Q 041325 136 LGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTV 213 (450)
Q Consensus 136 ~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 213 (450)
+|++ |++|+.|+.|++|++....... .. ......+.+|.+.|
T Consensus 117 s~~g~~las~~~d~~v~iw~~~~~~~~~---------------~~---------------------~~~~~~~~gh~~~v 160 (380)
T 3iz6_a 117 APNGQSVACGGLDSACSIFNLSSQADRD---------------GN---------------------MPVSRVLTGHKGYA 160 (380)
T ss_dssp CTTSSEEEECCSSSCCEEEECCCCSSCC---------------CS---------------------STTCCBCCCCSSCC
T ss_pred CCCCCEEEEeeCCCcEEEEECCCCcccc---------------CC---------------------ccceeeccCCCcce
Confidence 9887 9999999999999997652100 00 01112345799999
Q ss_pred EEEEEccC-CCEEEEEeCCCcEEEEecCCCeEEEEee----cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhh
Q 041325 214 SALALSSD-GSLLYSTSWDRTFKIWRTSDFRCLESVK----NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAAL 288 (450)
Q Consensus 214 ~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 288 (450)
.++.|.|+ +..|++|+.|++|++||+.+++.+..+. ..|...|.++.+++.+..++++|+.||.|++||++...
T Consensus 161 ~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~- 239 (380)
T 3iz6_a 161 SSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITS- 239 (380)
T ss_dssp CCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTC-
T ss_pred EEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCC-
Confidence 99999996 5679999999999999999999887762 36888999999988677799999999999999987432
Q ss_pred hccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe
Q 041325 289 QVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV 368 (450)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 368 (450)
..+..+.+|...|.+++|+|++++|++|+.||.|++||+++++.+..+..... ....+...|++++|+
T Consensus 240 ------~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~------~~~~~~~~v~~~~~s 307 (380)
T 3iz6_a 240 ------RAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPD------RNDNELPIVTSVAFS 307 (380)
T ss_dssp ------CCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCS------SSCCSSCSCSEEEEC
T ss_pred ------cceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccc------ccccccCceEEEEEC
Confidence 14566778999999999999999999999999999999999876633221110 112233458899997
Q ss_pred --CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEe----cCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCC
Q 041325 369 --SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVL----EGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDC 442 (450)
Q Consensus 369 --~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~----~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg 442 (450)
+++|++|+.||.|++||+..+ +.+..+ .+|.+.|++++|+|++. +|+||+.||
T Consensus 308 ~~g~~l~~g~~dg~i~vwd~~~~--------~~~~~~~~~~~~h~~~v~~l~~s~dg~-------------~l~sgs~D~ 366 (380)
T 3iz6_a 308 ISGRLLFAGYSNGDCYVWDTLLA--------EMVLNLGTLQNSHEGRISCLGLSSDGS-------------ALCTGSWDK 366 (380)
T ss_dssp SSSSEEEEECTTSCEEEEETTTC--------CEEEEECCSCSSCCCCCCEEEECSSSS-------------EEEEECTTS
T ss_pred CCCCEEEEEECCCCEEEEECCCC--------ceEEEEecccCCCCCceEEEEECCCCC-------------EEEEeeCCC
Confidence 459999999999999998864 444444 68999999999999999 999999999
Q ss_pred cEEEEEeC
Q 041325 443 EIKIWQIR 450 (450)
Q Consensus 443 ~i~iw~l~ 450 (450)
+|++|++.
T Consensus 367 ~i~iW~~~ 374 (380)
T 3iz6_a 367 NLKIWAFS 374 (380)
T ss_dssp CEEEEECC
T ss_pred CEEEEecC
Confidence 99999974
No 11
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-45 Score=323.96 Aligned_cols=309 Identities=18% Similarity=0.299 Sum_probs=233.5
Q ss_pred cceeeeEEeecCCCcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEE-ec-CCCceEEEEEeCCe
Q 041325 62 EHQCSATLKVKGNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVA-TG-NGDAVKSLVVLGDK 139 (450)
Q Consensus 62 ~~~~~~~l~~~~h~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~-~~-h~~~v~~l~~~~~~ 139 (450)
..+++++|+ +|...|.+++|++.+||+|+.||.|++||+..+..... ..+ .+ |...|.+++|+|+.
T Consensus 3 ~~~~~~~~~--~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~~~~----------~~~~~~~h~~~v~~v~~sp~~ 70 (330)
T 2hes_X 3 SINLIKSLK--LYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDFTLI----------DVLDETAHKKAIRSVAWRPHT 70 (330)
T ss_dssp CCEEEEEEE--CCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCCEEE----------EEECTTCCCSCEEEEEECTTS
T ss_pred ccccceeec--cCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCeEEE----------EEEecCCccCCEEEEEECCCC
Confidence 456788888 99999999999877999999999999999987542211 012 23 99999999999876
Q ss_pred --EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEE
Q 041325 140 --LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALA 217 (450)
Q Consensus 140 --l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 217 (450)
|++|+.|++|++||++...... . .......+.+|.+.|.+++
T Consensus 71 ~~las~s~D~~v~iw~~~~~~~~~---------~---------------------------~~~~~~~~~~h~~~V~~v~ 114 (330)
T 2hes_X 71 SLLAAGSFDSTVSIWAKEESADRT---------F---------------------------EMDLLAIIEGHENEVKGVA 114 (330)
T ss_dssp SEEEEEETTSCEEEEEC----------------C---------------------------CCEEEEEEC----CEEEEE
T ss_pred CEEEEEeCCCcEEEEEcccCcCcc---------c---------------------------cceeEEEEcCCCCcEEEEE
Confidence 9999999999999986431000 0 0011223457999999999
Q ss_pred EccCCCEEEEEeCCCcEEEEecCC----CeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc
Q 041325 218 LSSDGSLLYSTSWDRTFKIWRTSD----FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 218 ~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 293 (450)
|+|++++|++|+.|+.|++||+.. .+++..+. .|...|.+++|+|+ ..+|++++.|+.|++||...+.
T Consensus 115 ~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~-~h~~~v~~v~~~p~-~~~l~s~s~D~~i~iW~~~~~~------ 186 (330)
T 2hes_X 115 WSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQ-EHSQDVKHVIWHPS-EALLASSSYDDTVRIWKDYDDD------ 186 (330)
T ss_dssp ECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEEC-CCSSCEEEEEECSS-SSEEEEEETTSCEEEEEEETTE------
T ss_pred ECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEec-cCCCceEEEEECCC-CCEEEEEcCCCeEEEEECCCCC------
Confidence 999999999999999999999943 24566666 79999999999995 4589999999999999986542
Q ss_pred chhhhhHhhcccceEEEEEcCC--CCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccC-CccceEEEEEeC-
Q 041325 294 HSLVQTLEKHKSAVTALALSTD--GTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG-HTKAILCLAVVS- 369 (450)
Q Consensus 294 ~~~~~~~~~~~~~i~~l~~~~~--~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~- 369 (450)
...+..+.+|...|.+++|+|+ +.+|++|+.|+.|++||+..+... ..........+.. |...|.+++|++
T Consensus 187 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~-----~~~~~~~~~~~~~~h~~~v~~v~~s~~ 261 (330)
T 2hes_X 187 WECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDED-----DQQEWVCEAILPDVHKRQVYNVAWGFN 261 (330)
T ss_dssp EEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTT-----SCEEEEEEEECCSCCSSCEEEEEECTT
T ss_pred eeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCcc-----ccceeEEeeecccccccceEEEEEcCC
Confidence 1245677889999999999998 778999999999999998754210 0011112233444 899999999984
Q ss_pred CeEEEEeCCCeEEEeeCCCCccccCCCceeE-EEecCCCc-ceEEEEEEe--cCCCCCCCCCCCCceEEEEEcccCCcEE
Q 041325 370 NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCL-AVLEGHRR-PVKCLTAVV--DSDYSNRNSDHSSTSFLVYSGSLDCEIK 445 (450)
Q Consensus 370 ~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~-~~~~~h~~-~v~~l~~~~--~~~~~~~~~~~~~~~~~l~s~~~Dg~i~ 445 (450)
.+|++++.||.|++||..++ ..+.. ....+|.. .|.+++|+| ++. +|++|+.||+|+
T Consensus 262 ~~l~s~~~dg~v~iw~~~~~------~~~~~~~~~~~h~~~~v~~v~~~~~~~~~-------------~las~s~Dg~v~ 322 (330)
T 2hes_X 262 GLIASVGADGVLAVYEEVDG------EWKVFAKRALCHGVYEINVVKWLELNGKT-------------ILATGGDDGIVN 322 (330)
T ss_dssp SCEEEEETTSCEEEEEEETT------EEEEEEEESCTTTTSCEEEEEEC-----C-------------CEEEEETTSEEE
T ss_pred CEEEEEeCCCEEEEEEcCCC------ceEEEeccccccccceEEEEEEecCCCce-------------EEEEecCCCcEE
Confidence 48999999999999998753 11223 33467887 899999999 567 899999999999
Q ss_pred EEEeC
Q 041325 446 IWQIR 450 (450)
Q Consensus 446 iw~l~ 450 (450)
||+++
T Consensus 323 ~W~~~ 327 (330)
T 2hes_X 323 FWSLE 327 (330)
T ss_dssp EEEC-
T ss_pred EEEec
Confidence 99974
No 12
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=2.2e-44 Score=319.17 Aligned_cols=289 Identities=21% Similarity=0.448 Sum_probs=244.4
Q ss_pred ccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC
Q 041325 61 SEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD 138 (450)
Q Consensus 61 ~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 138 (450)
+...+..++. +|...|++++| ++++|++|+.||.|++|++.+++.... +.+|...|.+++|+++
T Consensus 11 ~~~~~~~~~~--gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~------------~~~h~~~v~~~~~~~~ 76 (312)
T 4ery_A 11 PNYALKFTLA--GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT------------ISGHKLGISDVAWSSD 76 (312)
T ss_dssp CCCEEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE------------ECCCSSCEEEEEECTT
T ss_pred CCceeEEEEc--ccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchh------------hccCCCceEEEEEcCC
Confidence 4456677777 99999999999 799999999999999999988876655 6789999999999987
Q ss_pred e--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEE
Q 041325 139 K--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSAL 216 (450)
Q Consensus 139 ~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 216 (450)
. |++++.||.|++||+++++. ...+.+|...|.++
T Consensus 77 ~~~l~s~~~d~~i~vwd~~~~~~-------------------------------------------~~~~~~~~~~v~~~ 113 (312)
T 4ery_A 77 SNLLVSASDDKTLKIWDVSSGKC-------------------------------------------LKTLKGHSNYVFCC 113 (312)
T ss_dssp SSEEEEEETTSEEEEEETTTCCE-------------------------------------------EEEEECCSSCEEEE
T ss_pred CCEEEEECCCCEEEEEECCCCcE-------------------------------------------EEEEcCCCCCEEEE
Confidence 6 99999999999999988732 12334688899999
Q ss_pred EEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchh
Q 041325 217 ALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSL 296 (450)
Q Consensus 217 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 296 (450)
+|+|++++|++|+.|+.|++||+++++.+..+. .|...|.+++|+|+ ..++++++.||.|++||+++++ .
T Consensus 114 ~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~l~~~~~d~~i~~wd~~~~~--------~ 183 (312)
T 4ery_A 114 NFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLP-AHSDPVSAVHFNRD-GSLIVSSSYDGLCRIWDTASGQ--------C 183 (312)
T ss_dssp EECSSSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCC--------E
T ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCEEEEEec-CCCCcEEEEEEcCC-CCEEEEEeCCCcEEEEECCCCc--------e
Confidence 999999999999999999999999999988887 78899999999984 4489999999999999997765 2
Q ss_pred hhh-HhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEE--EEEe---CC
Q 041325 297 VQT-LEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILC--LAVV---SN 370 (450)
Q Consensus 297 ~~~-~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~---~~ 370 (450)
+.. ...+...+..++|+|++++|++++.||.|++||+++++.+ ..+.+|...+.+ ..+. +.
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~ 250 (312)
T 4ery_A 184 LKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCL-------------KTYTGHKNEKYCIFANFSVTGGK 250 (312)
T ss_dssp EEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEE-------------EEECSSCCSSSCCCEEEECSSSC
T ss_pred eeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEE-------------EEEEecCCceEEEEEEEEeCCCc
Confidence 222 2345678999999999999999999999999999988755 344455443322 2222 55
Q ss_pred eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcc--cCCcEEEEE
Q 041325 371 LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGS--LDCEIKIWQ 448 (450)
Q Consensus 371 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~--~Dg~i~iw~ 448 (450)
+|++|+.||.|++||+.++ +.+..+.+|...|.+++|+|++. ++++++ .|+.|++|+
T Consensus 251 ~l~sg~~dg~i~vwd~~~~--------~~~~~~~~h~~~v~~~~~~p~~~-------------~l~s~~~~~d~~i~~W~ 309 (312)
T 4ery_A 251 WIVSGSEDNLVYIWNLQTK--------EIVQKLQGHTDVVISTACHPTEN-------------IIASAALENDKTIKLWK 309 (312)
T ss_dssp EEEECCTTSCEEEEETTTC--------CEEEEECCCSSCEEEEEECSSSS-------------EEEEEECTTTCCEEEEE
T ss_pred EEEEECCCCEEEEEECCCc--------hhhhhhhccCCcEEEEeecCcCC-------------ceEEEEccCCccEEEec
Confidence 9999999999999999874 67888999999999999999999 899886 699999998
Q ss_pred eC
Q 041325 449 IR 450 (450)
Q Consensus 449 l~ 450 (450)
..
T Consensus 310 ~d 311 (312)
T 4ery_A 310 SD 311 (312)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 13
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.5e-44 Score=320.59 Aligned_cols=292 Identities=21% Similarity=0.370 Sum_probs=237.4
Q ss_pred ccceeeeEEeecCCCcceEEEEE--e-CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC
Q 041325 61 SEHQCSATLKVKGNSSYIPSLAI--A-GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG 137 (450)
Q Consensus 61 ~~~~~~~~l~~~~h~~~v~~~~~--d-~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 137 (450)
+...+..+|+ ||.+.|++++| + +++|++|+.||+|++|++........ .....+.+|...|.+++|++
T Consensus 5 ~~~~l~~~l~--gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~-------~~~~~~~~h~~~v~~~~~s~ 75 (319)
T 3frx_A 5 EVLVLRGTLE--GHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFG-------VPVRSFKGHSHIVQDCTLTA 75 (319)
T ss_dssp EEEEEEEEEC--CCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEE-------EEEEEEECCSSCEEEEEECT
T ss_pred eEEEEEEEEc--cccceEEEEEccCCCccEEEEecCCccEEEecCCCCCcccc-------ccceEEeCCcccEEEEEECC
Confidence 3456677777 99999999999 2 48999999999999999864332110 11234789999999999998
Q ss_pred Ce--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEE
Q 041325 138 DK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSA 215 (450)
Q Consensus 138 ~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 215 (450)
+. |++|+.|++|++||+.+++. ...+.+|...|.+
T Consensus 76 dg~~l~s~s~D~~v~~wd~~~~~~-------------------------------------------~~~~~~h~~~v~~ 112 (319)
T 3frx_A 76 DGAYALSASWDKTLRLWDVATGET-------------------------------------------YQRFVGHKSDVMS 112 (319)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEE-------------------------------------------EEEEECCSSCEEE
T ss_pred CCCEEEEEeCCCEEEEEECCCCCe-------------------------------------------eEEEccCCCcEEE
Confidence 76 99999999999999998731 2234579999999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecC-----CcEEEEEcCCCcEEEEeCcchhhhc
Q 041325 216 LALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSN-----DGFVYTGSADTKIKVWKKLRAALQV 290 (450)
Q Consensus 216 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~l~~~~~dg~i~vwd~~~~~~~~ 290 (450)
++|+|++.+|++|+.|+.|++||++ ++++..+. .|...|.++.+.|.. ...+++++.|+.|++||+++.+
T Consensus 113 ~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--- 187 (319)
T 3frx_A 113 VDIDKKASMIISGSRDKTIKVWTIK-GQCLATLL-GHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQ--- 187 (319)
T ss_dssp EEECTTSCEEEEEETTSCEEEEETT-SCEEEEEC-CCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTE---
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEe-ccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcch---
Confidence 9999999999999999999999997 45666666 799999999999743 2379999999999999997655
Q ss_pred cccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN 370 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 370 (450)
....+.+|...|.+++|+|++++|++|+.||.|++||+.+++.+ ..+. +...|.+++|+++
T Consensus 188 -----~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~-------------~~~~-~~~~v~~~~~sp~ 248 (319)
T 3frx_A 188 -----IEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAM-------------YTLS-AQDEVFSLAFSPN 248 (319)
T ss_dssp -----EEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE-------------EEEE-CCSCEEEEEECSS
T ss_pred -----hheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEE-------------EEec-CCCcEEEEEEcCC
Confidence 45566789999999999999999999999999999999988755 2333 3467999999965
Q ss_pred --eEEEEeCCCeEEEeeCCCCccccCCCceeEEEe--------cCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEccc
Q 041325 371 --LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVL--------EGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSL 440 (450)
Q Consensus 371 --~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--------~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~ 440 (450)
++++++ ++.+++|++... ..+..+ ..|...+.+++|+|+++ +|++|+.
T Consensus 249 ~~~la~~~-~~~i~v~~~~~~--------~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~-------------~l~sg~~ 306 (319)
T 3frx_A 249 RYWLAAAT-ATGIKVFSLDPQ--------YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQ-------------TLFAGYT 306 (319)
T ss_dssp SSEEEEEE-TTEEEEEEETTE--------EEEEEECCCCTTCCGGGCCCEEEEEECTTSS-------------EEEEEET
T ss_pred CCEEEEEc-CCCcEEEEeCcC--------eeeeccCccccccccCcCcceeEEEECCCCC-------------EEEEeec
Confidence 666665 556999998863 233333 23567799999999999 9999999
Q ss_pred CCcEEEEEeC
Q 041325 441 DCEIKIWQIR 450 (450)
Q Consensus 441 Dg~i~iw~l~ 450 (450)
||.|+|||+.
T Consensus 307 Dg~i~vWd~~ 316 (319)
T 3frx_A 307 DNVIRVWQVM 316 (319)
T ss_dssp TSCEEEEEEE
T ss_pred CceEEEEEEe
Confidence 9999999973
No 14
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.8e-43 Score=323.17 Aligned_cols=315 Identities=24% Similarity=0.402 Sum_probs=239.4
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCc------ceeEEecCCCceEEEEEeCCe--EEE
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDH------ANVVATGNGDAVKSLVVLGDK--LFS 142 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~------~~~~~~~h~~~v~~l~~~~~~--l~s 142 (450)
+|...|+|++| ||++||+|+ ++.+++|++.+++............ .......+...|.+++|++++ |++
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s 140 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT 140 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence 69999999999 899999987 6899999999988765532211000 000111234469999999876 999
Q ss_pred EeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCC
Q 041325 143 AHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDG 222 (450)
Q Consensus 143 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 222 (450)
|+.||+|++||+++++. ...+.+|...|.+++|+|++
T Consensus 141 ~~~d~~i~iwd~~~~~~-------------------------------------------~~~~~~h~~~v~~~~~~p~~ 177 (393)
T 1erj_A 141 GAEDRLIRIWDIENRKI-------------------------------------------VMILQGHEQDIYSLDYFPSG 177 (393)
T ss_dssp EETTSCEEEEETTTTEE-------------------------------------------EEEECCCSSCEEEEEECTTS
T ss_pred EcCCCeEEEEECCCCcE-------------------------------------------EEEEccCCCCEEEEEEcCCC
Confidence 99999999999988721 12344799999999999999
Q ss_pred CEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhh
Q 041325 223 SLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEK 302 (450)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 302 (450)
++|++++.|++|++||++++++...+. +...+.+++++|.+..++++|+.||.|++||++++...... ........+
T Consensus 178 ~~l~s~s~d~~v~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~-~~~~~~~~~ 254 (393)
T 1erj_A 178 DKLVSGSGDRTVRIWDLRTGQCSLTLS--IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL-DSENESGTG 254 (393)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEE--CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEE-C------CC
T ss_pred CEEEEecCCCcEEEEECCCCeeEEEEE--cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEee-cccccCCCC
Confidence 999999999999999999999888776 66789999999866669999999999999999776521100 001122356
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCe
Q 041325 303 HKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNT 380 (450)
Q Consensus 303 ~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~ 380 (450)
|...|.+++|+|++++|++|+.||.|++||+++.......... ........+.+|...|.++++++ .+|++|+.||.
T Consensus 255 h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~ 333 (393)
T 1erj_A 255 HKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP-NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 333 (393)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEEC----------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE
T ss_pred CCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCC-CCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCe
Confidence 8899999999999999999999999999999875432111110 01123345678999999999984 59999999999
Q ss_pred EEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 381 IRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 381 v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
|++||+.++ +++..+.+|...|.+++|++... +++++.+|+||+.||+|+||+++
T Consensus 334 v~iwd~~~~--------~~~~~l~~h~~~v~~v~~~~~~~-------~~p~~~~l~sgs~Dg~i~iW~~~ 388 (393)
T 1erj_A 334 VLFWDKKSG--------NPLLMLQGHRNSVISVAVANGSS-------LGPEYNVFATGSGDCKARIWKYK 388 (393)
T ss_dssp EEEEETTTC--------CEEEEEECCSSCEEEEEECSSCT-------TCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEEEECCCC--------eEEEEECCCCCCEEEEEecCCcC-------cCCCCCEEEEECCCCcEEECccc
Confidence 999999875 67788999999999999987543 34445599999999999999974
No 15
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=9.1e-44 Score=319.18 Aligned_cols=298 Identities=19% Similarity=0.311 Sum_probs=232.7
Q ss_pred cceeeeEEeecCCCcceEEEEE--------eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEE
Q 041325 62 EHQCSATLKVKGNSSYIPSLAI--------AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSL 133 (450)
Q Consensus 62 ~~~~~~~l~~~~h~~~v~~~~~--------d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 133 (450)
..++..+|+ ||.+.|++++| |+++|+||+.||+|++||+...+.... .......+.+|...|.++
T Consensus 10 ~~~~~~~l~--gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~-----~~~~~~~l~~h~~~V~~~ 82 (343)
T 2xzm_R 10 QVVKRGILE--GHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGY-----FGIPHKALTGHNHFVSDL 82 (343)
T ss_dssp EEEEEEEEE--CCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSB-----SEEEEEEECCCSSCEEEE
T ss_pred Eeeeeeeec--cchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccc-----cccccchhccCCCceEEE
Confidence 345677777 99999999998 789999999999999999876432110 011223477999999999
Q ss_pred EEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCC
Q 041325 134 VVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVD 211 (450)
Q Consensus 134 ~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (450)
+|+++. +++++.|++|++||+++++. ...+.+|..
T Consensus 83 ~~~~~~~~l~s~s~D~~v~lwd~~~~~~-------------------------------------------~~~~~~h~~ 119 (343)
T 2xzm_R 83 ALSQENCFAISSSWDKTLRLWDLRTGTT-------------------------------------------YKRFVGHQS 119 (343)
T ss_dssp EECSSTTEEEEEETTSEEEEEETTSSCE-------------------------------------------EEEEECCCS
T ss_pred EECCCCCEEEEEcCCCcEEEEECCCCcE-------------------------------------------EEEEcCCCC
Confidence 999876 89999999999999988721 223447999
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEe-ecccccceEEEEEeecCC---------cEEEEEcCCCcEEEE
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESV-KNAHDDAINAIVVSKSND---------GFVYTGSADTKIKVW 281 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~---------~~l~~~~~dg~i~vw 281 (450)
.|.+++|+|++++|++++.|+.|++||+......... ...|...|.+++|+|... .++++++.||.|++|
T Consensus 120 ~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iw 199 (343)
T 2xzm_R 120 EVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVW 199 (343)
T ss_dssp CEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEE
T ss_pred cEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEE
Confidence 9999999999999999999999999999844332222 125788999999998652 589999999999999
Q ss_pred eCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccc
Q 041325 282 KKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA 361 (450)
Q Consensus 282 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (450)
|... + ....+.+|...|.+++|+|+|++|++|+.||.|++||+...... .....+...
T Consensus 200 d~~~-~--------~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~-------------~~~~~~~~~ 257 (343)
T 2xzm_R 200 NTNF-Q--------IRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYP-------------QREFDAGST 257 (343)
T ss_dssp ETTT-E--------EEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSC-------------SEEEECSSC
T ss_pred cCCC-c--------eeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCccc-------------ceeecCCCc
Confidence 9432 2 34456789999999999999999999999999999999543211 111124456
Q ss_pred eEEEEEeCC-eEEEEeCCCeEEEeeCCCCccccCCCceeEEEe-----------cCCCcceEEEEEEecCCCCCCCCCCC
Q 041325 362 ILCLAVVSN-LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVL-----------EGHRRPVKCLTAVVDSDYSNRNSDHS 429 (450)
Q Consensus 362 v~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-----------~~h~~~v~~l~~~~~~~~~~~~~~~~ 429 (450)
|.+++|+++ .+++++.|+.|++||+.++.. ..+..+ .+|...|.+++|+|+++
T Consensus 258 v~~v~~sp~~~~la~~~d~~v~iw~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~--------- 322 (343)
T 2xzm_R 258 INQIAFNPKLQWVAVGTDQGVKIFNLMTQSK------APVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK--------- 322 (343)
T ss_dssp EEEEEECSSSCEEEEEESSCEEEEESSSCCS------CSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC---------
T ss_pred EEEEEECCCCCEEEEECCCCEEEEEeCCCCC------CceEEeecCcchhhhhhcCCCCceEEEEECCCCC---------
Confidence 999999965 445566788899999986421 111122 36888999999999999
Q ss_pred CceEEEEEcccCCcEEEEEeC
Q 041325 430 STSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 430 ~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+|++|+.||.|++|+++
T Consensus 323 ----~l~sg~~Dg~v~~w~~~ 339 (343)
T 2xzm_R 323 ----KLFAGFTDGVIRTFSFE 339 (343)
T ss_dssp ----CEEEEETTSEEEEEEEE
T ss_pred ----eEEEecCCceEEEEEEE
Confidence 89999999999999973
No 16
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.7e-43 Score=337.63 Aligned_cols=348 Identities=24% Similarity=0.410 Sum_probs=276.1
Q ss_pred CcccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEE
Q 041325 11 CRRNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLL 88 (450)
Q Consensus 11 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l 88 (450)
...++.+.|+|+...+.+...+..+.. + ...++++..+. +|...|++++| |+++|
T Consensus 221 ~~~v~~~~~s~dg~~l~~~~~d~~i~~--------------------w-~~~~~~~~~~~--~~~~~v~~v~~~~d~~~l 277 (577)
T 2ymu_A 221 SSSVRGVAFSPDGQTIASASDDKTVKL--------------------W-NRNGQLLQTLT--GHSSSVNGVAFRPDGQTI 277 (577)
T ss_dssp SSCEEEEEECTTSSCEEEEETTSCEEE--------------------E-CTTSCEEEEEC--CCSSCEEEEEECTTSSEE
T ss_pred CCCEEEEEECCCCCEEEEEeCCCEEEE--------------------E-eCCCCEEEEEe--cCCCCEEEEEEcCCCCEE
Confidence 345566777777777766655555543 1 12346777787 99999999999 79999
Q ss_pred EEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccC
Q 041325 89 YGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSG 166 (450)
Q Consensus 89 ~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~ 166 (450)
++++.|+.|++||... +.... +.+|...|.+++|+|+. +++++.||+|++||............
T Consensus 278 ~~~~~d~~i~~w~~~~-~~~~~------------~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~- 343 (577)
T 2ymu_A 278 ASASDDKTVKLWNRNG-QLLQT------------LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGH- 343 (577)
T ss_dssp EEEETTSCEEEEETTS-CEEEE------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCC-
T ss_pred EEEeCCCEEEEEeCCC-cEEEE------------EecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCC-
Confidence 9999999999999653 33332 67899999999999876 99999999999999876643322111
Q ss_pred cccccceeeeeeccCCCcceeEeeecCceEEEeec---ceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCe
Q 041325 167 KLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRH---KKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFR 243 (450)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 243 (450)
......+... .+....+....++.+.++.. ....+.+|...|.+++|+|++++|++++.|+.|++||. +++
T Consensus 344 ---~~~v~~~~~s--~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~ 417 (577)
T 2ymu_A 344 ---SSSVWGVAFS--PDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQ 417 (577)
T ss_dssp ---SSCEEEEEEC--TTSSEEEEEETTSEEEEEETTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCC
T ss_pred ---CCCEEEEEEC--CCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCC
Confidence 1111222222 23344555556666666543 34456789999999999999999999999999999996 567
Q ss_pred EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEee
Q 041325 244 CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA 323 (450)
Q Consensus 244 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~ 323 (450)
.+..+. .|...|.+++|+|+ +.++++++.|+.|++||... + .+..+.+|...|++++|+|++++|++++
T Consensus 418 ~~~~~~-~~~~~v~~~~~s~d-~~~l~~~~~d~~v~~w~~~~-~--------~~~~~~~~~~~v~~~~~spd~~~las~~ 486 (577)
T 2ymu_A 418 LLQTLT-GHSSSVWGVAFSPD-DQTIASASDDKTVKLWNRNG-Q--------LLQTLTGHSSSVRGVAFSPDGQTIASAS 486 (577)
T ss_dssp EEEEEE-CCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTS-C--------EEEEEECCSSCEEEEEECTTSCEEEEEE
T ss_pred EEEEec-CCCCCeEEEEECCC-CCEEEEEcCCCEEEEEECCC-C--------EEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence 777777 89999999999984 45899999999999999633 2 4556678999999999999999999999
Q ss_pred CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEE
Q 041325 324 CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLA 401 (450)
Q Consensus 324 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~ 401 (450)
.|+.|++||. +++.+ ..+.+|...|++++|++ ++|++++.||.|++||... +++.
T Consensus 487 ~d~~i~iw~~-~~~~~-------------~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~---------~~~~ 543 (577)
T 2ymu_A 487 DDKTVKLWNR-NGQLL-------------QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG---------QLLQ 543 (577)
T ss_dssp TTSEEEEEET-TSCEE-------------EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTS---------CEEE
T ss_pred CCCEEEEEcC-CCCEE-------------EEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCC---------CEEE
Confidence 9999999995 44433 56788999999999985 4999999999999999642 6788
Q ss_pred EecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 402 VLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 402 ~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
.+.+|...|++++|+||++ +|+|++.|++|++||
T Consensus 544 ~~~~h~~~v~~~~fs~dg~-------------~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 544 TLTGHSSSVWGVAFSPDGQ-------------TIASASSDKTVKLWN 577 (577)
T ss_dssp EEECCSSCEEEEEECTTSS-------------CEEEEETTSCEEEEC
T ss_pred EEcCCCCCEEEEEEcCCCC-------------EEEEEeCCCEEEEeC
Confidence 8999999999999999999 899999999999997
No 17
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=7.6e-43 Score=313.32 Aligned_cols=305 Identities=20% Similarity=0.361 Sum_probs=242.8
Q ss_pred CCccceeeeEEeecCCCcceEEEEE--e-CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEE
Q 041325 59 AASEHQCSATLKVKGNSSYIPSLAI--A-GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVV 135 (450)
Q Consensus 59 ~~~~~~~~~~l~~~~h~~~v~~~~~--d-~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 135 (450)
..+..++..+|+ ||.+.|++|+| + +++||||+.||+|+|||+.+.+.... .....+.+|...|.+++|
T Consensus 24 ~~~~~~l~~tL~--GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~-------~~~~~l~~h~~~V~~~~~ 94 (340)
T 4aow_A 24 MTEQMTLRGTLK--GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG-------IPQRALRGHSHFVSDVVI 94 (340)
T ss_dssp --CEEEEEEEEC--CCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE-------EEEEEECCCSSCEEEEEE
T ss_pred cCCceEEEEEEC--CccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc-------eeeEEEeCCCCCEEEEEE
Confidence 344556777888 99999999999 3 68999999999999999887653221 112246799999999999
Q ss_pred eCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCce
Q 041325 136 LGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTV 213 (450)
Q Consensus 136 ~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 213 (450)
+++. |++++.|+.|++|+...... ......+...+
T Consensus 95 s~dg~~l~s~~~d~~i~~~~~~~~~~-------------------------------------------~~~~~~~~~~~ 131 (340)
T 4aow_A 95 SSDGQFALSGSWDGTLRLWDLTTGTT-------------------------------------------TRRFVGHTKDV 131 (340)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEE-------------------------------------------EEEEECCSSCE
T ss_pred CCCCCEEEEEcccccceEEeecccce-------------------------------------------eeeecCCCCce
Confidence 9877 99999999999999988732 11222466678
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCc-EEEEEcCCCcEEEEeCcchhhhccc
Q 041325 214 SALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDG-FVYTGSADTKIKVWKKLRAALQVNK 292 (450)
Q Consensus 214 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~ 292 (450)
..+.+++++++|++++.|+.+++||+............|...+..+++++.... ++++++.|+.|++||+++++
T Consensus 132 ~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~----- 206 (340)
T 4aow_A 132 LSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCK----- 206 (340)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTE-----
T ss_pred eEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCc-----
Confidence 889999999999999999999999998776665555578899999999876543 57899999999999997766
Q ss_pred cchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-e
Q 041325 293 KHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-L 371 (450)
Q Consensus 293 ~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~ 371 (450)
....+.+|...|++++|+|++++|++|+.||.|++||+++.+.+ ..+. +...|.++.|+++ .
T Consensus 207 ---~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~-------------~~~~-~~~~v~~~~~~~~~~ 269 (340)
T 4aow_A 207 ---LKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHL-------------YTLD-GGDIINALCFSPNRY 269 (340)
T ss_dssp ---EEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEE-------------EEEE-CSSCEEEEEECSSSS
T ss_pred ---eeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCcee-------------eeec-CCceEEeeecCCCCc
Confidence 56667789999999999999999999999999999999987755 2232 3467899999865 7
Q ss_pred EEEEeCCCeEEEeeCCCCccccC-CCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 372 LFSGSSDNTIRIWRRSSSVTDHQ-KGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 372 l~s~~~dg~v~iwd~~~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+++++.|+.|++||++.+..... ..........+|...|++++|+|+++ +|++|+.||.|+|||++
T Consensus 270 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~-------------~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 270 WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQ-------------TLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSS-------------EEEEEETTSCEEEEEEE
T ss_pred eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCC-------------EEEEEeCCCEEEEEeCC
Confidence 88888999999999986421110 11122233457899999999999999 99999999999999984
No 18
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=6.1e-43 Score=337.66 Aligned_cols=319 Identities=14% Similarity=0.197 Sum_probs=255.9
Q ss_pred ccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEE
Q 041325 13 RNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYG 90 (450)
Q Consensus 13 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~t 90 (450)
+...+.|+|++..+..... ..+. ......++..+++. +|...|++++| ||++||+
T Consensus 20 ~~~~~~~spdg~~l~~~~~-~~v~--------------------l~~~~~~~~~~~~~--~h~~~v~~~~~spdg~~las 76 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCNG-TSVY--------------------TVPVGSLTDTEIYT--EHSHQTTVAKTSPSGYYCAS 76 (611)
T ss_dssp CCCCCEECTTSSEEEEEET-TEEE--------------------EEETTCSSCCEEEC--CCSSCEEEEEECTTSSEEEE
T ss_pred ceeEEeeCCCCCEEEeCCC-CEEE--------------------EecCCCcccCeEec--CCCCceEEEEECCCCcEEEE
Confidence 5556677777777666432 2222 22223345677787 99999999999 8999999
Q ss_pred eeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCC----CeEEEEEcCCCceeEEec
Q 041325 91 GSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQD----HKIRVWKIDNNTSAYYST 164 (450)
Q Consensus 91 gs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d----g~i~iw~~~~~~~~~~~~ 164 (450)
|+.||+|+|||+.+++.... ..+.+|.+.|.+++|+|+. |++++.+ +.|++||....
T Consensus 77 g~~d~~v~lWd~~~~~~~~~----------~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~------- 139 (611)
T 1nr0_A 77 GDVHGNVRIWDTTQTTHILK----------TTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTS------- 139 (611)
T ss_dssp EETTSEEEEEESSSTTCCEE----------EEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCB-------
T ss_pred EeCCCCEEEeECCCCcceee----------EeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCC-------
Confidence 99999999999875543211 1367899999999999887 7777765 46788874321
Q ss_pred cCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCC-EEEEEeCCCcEEEEecCCCe
Q 041325 165 SGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGS-LLYSTSWDRTFKIWRTSDFR 243 (450)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 243 (450)
...+.+|.+.|.+++|+|++. .|++|+.|++|++||..+++
T Consensus 140 --------------------------------------~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~ 181 (611)
T 1nr0_A 140 --------------------------------------NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFK 181 (611)
T ss_dssp --------------------------------------CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBE
T ss_pred --------------------------------------cceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCe
Confidence 112347999999999999986 69999999999999999999
Q ss_pred EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhH-------hhcccceEEEEEcCCC
Q 041325 244 CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTL-------EKHKSAVTALALSTDG 316 (450)
Q Consensus 244 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-------~~~~~~i~~l~~~~~~ 316 (450)
+...+. +|...|.+++|+|+ ..+|++++.|+.|++||+.+++ ....+ .+|...|.+++|+|++
T Consensus 182 ~~~~l~-~H~~~V~~v~fspd-g~~las~s~D~~i~lwd~~~g~--------~~~~~~~~~~~~~~h~~~V~~v~~spdg 251 (611)
T 1nr0_A 182 FKSTFG-EHTKFVHSVRYNPD-GSLFASTGGDGTIVLYNGVDGT--------KTGVFEDDSLKNVAHSGSVFGLTWSPDG 251 (611)
T ss_dssp EEEEEC-CCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCC--------EEEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred Eeeeec-cccCceEEEEECCC-CCEEEEEECCCcEEEEECCCCc--------EeeeeccccccccccCCCEEEEEECCCC
Confidence 888887 89999999999995 4489999999999999987765 22222 2689999999999999
Q ss_pred CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCCCccccCCC
Q 041325 317 TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKG 396 (450)
Q Consensus 317 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~ 396 (450)
++|++++.|++|++||+.+++.+..+. .-..+...+.++.|.++.+++++.||.+++||...+
T Consensus 252 ~~l~s~s~D~~v~lWd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~------- 314 (611)
T 1nr0_A 252 TKIASASADKTIKIWNVATLKVEKTIP----------VGTRIEDQQLGIIWTKQALVSISANGFINFVNPELG------- 314 (611)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEE----------CCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTT-------
T ss_pred CEEEEEeCCCeEEEEeCCCCceeeeec----------CCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCC-------
Confidence 999999999999999999887653211 112344566788888999999999999999998864
Q ss_pred ceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 397 YSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 397 ~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
.+...+.+|...|++++|+|+++ +|++++.|++|++||++
T Consensus 315 -~~~~~~~gh~~~v~~l~~spdg~-------------~l~s~s~D~~v~~Wd~~ 354 (611)
T 1nr0_A 315 -SIDQVRYGHNKAITALSSSADGK-------------TLFSADAEGHINSWDIS 354 (611)
T ss_dssp -EEEEEECCCSSCEEEEEECTTSS-------------EEEEEETTSCEEEEETT
T ss_pred -CcceEEcCCCCCEEEEEEeCCCC-------------EEEEEeCCCcEEEEECC
Confidence 56778889999999999999999 99999999999999974
No 19
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=6.9e-42 Score=305.45 Aligned_cols=244 Identities=17% Similarity=0.216 Sum_probs=205.9
Q ss_pred CCCcceEEEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeE
Q 041325 73 GNSSYIPSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKI 149 (450)
Q Consensus 73 ~h~~~v~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i 149 (450)
.|...|.+++| ..+.|++|+.||+|+|||+.+++...... ....+|.+.|++++|++++ |++|+.||+|
T Consensus 80 ~~~~~v~~~~~s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~--------~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i 151 (344)
T 4gqb_B 80 QTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSK--------FCKYEHDDIVSTVSVLSSGTQAVSGSKDICI 151 (344)
T ss_dssp EESSCEEEEEEETTTEEEEEETTSEEEEEEECTTSSCEEEE--------EEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred ccCCCEEEEEEeCCCeEEEEECCCEEEEEeccCCCceeEee--------ccccCCCCCEEEEEECCCCCEEEEEeCCCeE
Confidence 57788999999 46789999999999999999887554421 2356899999999999876 9999999999
Q ss_pred EEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCC-CEEEEE
Q 041325 150 RVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDG-SLLYST 228 (450)
Q Consensus 150 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~ 228 (450)
++||+++++ .+ ..+.+|.+.|.+++|++++ .+|+++
T Consensus 152 ~iwd~~~~~----------------~~---------------------------~~~~~h~~~V~~~~~~~~~~~~l~s~ 188 (344)
T 4gqb_B 152 KVWDLAQQV----------------VL---------------------------SSYRAHAAQVTCVAASPHKDSVFLSC 188 (344)
T ss_dssp EEEETTTTE----------------EE---------------------------EEECCCSSCEEEEEECSSCTTEEEEE
T ss_pred EEEECCCCc----------------EE---------------------------EEEcCcCCceEEEEecCCCCCceeee
Confidence 999999872 22 2344799999999999987 478999
Q ss_pred eCCCcEEEEecCCCeEEEEeec-ccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccce
Q 041325 229 SWDRTFKIWRTSDFRCLESVKN-AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAV 307 (450)
Q Consensus 229 ~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i 307 (450)
+.|++|++||+++++....+.. .+...+.+++|+|.+..++++|+.||.|++||+++++ .+..+.+|...|
T Consensus 189 s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~--------~~~~~~~h~~~v 260 (344)
T 4gqb_B 189 SEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTS--------CVLSSAVHSQCV 260 (344)
T ss_dssp ETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC----------CCEEEECCSSCE
T ss_pred ccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCc--------EEEEEcCCCCCE
Confidence 9999999999999988877752 3556789999999777789999999999999998776 677788999999
Q ss_pred EEEEEcCCC-CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC---eEEEEeCCCeEEE
Q 041325 308 TALALSTDG-TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN---LLFSGSSDNTIRI 383 (450)
Q Consensus 308 ~~l~~~~~~-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~~~dg~v~i 383 (450)
++++|+|++ ++|++|+.|+.|++||+.+++.+ .+.+|...|++++|+++ +|++|+.||+|++
T Consensus 261 ~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~--------------~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~ 326 (344)
T 4gqb_B 261 TGLVFSPHSVPFLASLSEDCSLAVLDSSLSELF--------------RSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVH 326 (344)
T ss_dssp EEEEECSSSSCCEEEEETTSCEEEECTTCCEEE--------------EECCCSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred EEEEEccCCCeEEEEEeCCCeEEEEECCCCcEE--------------EEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEE
Confidence 999999998 58999999999999999987643 45789999999999843 6789999999999
Q ss_pred eeCCCC
Q 041325 384 WRRSSS 389 (450)
Q Consensus 384 wd~~~~ 389 (450)
|++.+.
T Consensus 327 w~v~~~ 332 (344)
T 4gqb_B 327 HVVPTE 332 (344)
T ss_dssp EECCC-
T ss_pred EECCCC
Confidence 999863
No 20
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=4.1e-42 Score=315.63 Aligned_cols=256 Identities=23% Similarity=0.434 Sum_probs=224.4
Q ss_pred cccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCce
Q 041325 53 FRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAV 130 (450)
Q Consensus 53 ~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 130 (450)
.....+...++++.++++ +|...|++++| ++++|++|+.||+|++||+.+++.... +.+|...|
T Consensus 130 g~i~vwd~~~~~~~~~l~--~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~------------~~~h~~~V 195 (410)
T 1vyh_C 130 ATIKVWDYETGDFERTLK--GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT------------MHGHDHNV 195 (410)
T ss_dssp SCEEEEETTTCCCCEEEC--CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEEC------------CCCCSSCE
T ss_pred CeEEEEECCCCcEEEEEe--ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEE------------EcCCCCCE
Confidence 445566667778888998 99999999999 799999999999999999988876655 66899999
Q ss_pred EEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeec
Q 041325 131 KSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVH 208 (450)
Q Consensus 131 ~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (450)
.+++|+|+. |++|+.|++|++||++++.. ...+.+
T Consensus 196 ~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~-------------------------------------------~~~~~~ 232 (410)
T 1vyh_C 196 SSVSIMPNGDHIVSASRDKTIKMWEVQTGYC-------------------------------------------VKTFTG 232 (410)
T ss_dssp EEEEECSSSSEEEEEETTSEEEEEETTTCCE-------------------------------------------EEEEEC
T ss_pred EEEEEeCCCCEEEEEeCCCeEEEEECCCCcE-------------------------------------------EEEEeC
Confidence 999999776 99999999999999998722 223446
Q ss_pred CCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecC-------------------CcEE
Q 041325 209 HVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSN-------------------DGFV 269 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-------------------~~~l 269 (450)
|...|.++.+++++.++++|+.|+.|++||+.++++...+. .|...|.+++|+|.. ..++
T Consensus 233 h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 311 (410)
T 1vyh_C 233 HREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELR-EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFL 311 (410)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEE
T ss_pred CCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEec-CCCceEEEEEEcCcccccchhhhccccccccCCCCCEE
Confidence 88999999999999999999999999999999999988887 899999999999852 3479
Q ss_pred EEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCce
Q 041325 270 YTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHM 349 (450)
Q Consensus 270 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~ 349 (450)
++|+.|+.|++||++++. .+..+.+|...|++++|+|++++|++|+.||.|++||+.+++++
T Consensus 312 ~sgs~D~~i~iwd~~~~~--------~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~---------- 373 (410)
T 1vyh_C 312 LSGSRDKTIKMWDVSTGM--------CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM---------- 373 (410)
T ss_dssp EEEETTSEEEEEETTTTE--------EEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCC----------
T ss_pred EEEeCCCeEEEEECCCCc--------eEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceE----------
Confidence 999999999999998766 56677789999999999999999999999999999999887654
Q ss_pred eeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCC
Q 041325 350 VLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 350 ~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~ 387 (450)
..+.+|...|++++|+++ +|++|+.||.|++|+++
T Consensus 374 ---~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 374 ---KTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp ---EEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred ---EEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 567789999999999855 99999999999999863
No 21
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.3e-41 Score=311.96 Aligned_cols=320 Identities=13% Similarity=0.120 Sum_probs=240.7
Q ss_pred eeeeEEeecCCCcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC-----
Q 041325 64 QCSATLKVKGNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD----- 138 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~----- 138 (450)
...+.++ +|.+.|++++|+.++|++|+.||.|++||+.+++.... ......+.+|...|.+++|+++
T Consensus 7 ~~~~~~~--~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~g 78 (397)
T 1sq9_A 7 ATANAGK--AHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENP------KDKSYSHFVHKSGLHHVDVLQAIERDA 78 (397)
T ss_dssp EEEEESS--CSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCCG------GGGEEEEECCTTCEEEEEEEEEEETTT
T ss_pred hhhhhhh--hhhcCeEEEEecCCeEEEEcCCCEEEEEECCCcccccC------CCcceEEecCCCcEEEEEEecccccCC
Confidence 3455555 99999999999889999999999999999988761100 1112236789999999999965
Q ss_pred ---e-EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecC-----
Q 041325 139 ---K-LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHH----- 209 (450)
Q Consensus 139 ---~-l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 209 (450)
. |++++.||.|++||+.++.... ......+..|
T Consensus 79 ~~~~~l~s~~~dg~i~iw~~~~~~~~~--------------------------------------~~~~~~~~~~~~~~~ 120 (397)
T 1sq9_A 79 FELCLVATTSFSGDLLFYRITREDETK--------------------------------------KVIFEKLDLLDSDMK 120 (397)
T ss_dssp EEEEEEEEEETTSCEEEEEEEECTTTC--------------------------------------CEEEEEECCSCTTGG
T ss_pred ccccEEEEEcCCCCEEEEEccCCcccc--------------------------------------cccceeecccccccC
Confidence 4 9999999999999998763100 0001223345
Q ss_pred CCceEEEEEc----cCCCE-EEEEeCCCcEEEEecCC------CeEEE-----Eee------cccccceEEEEEeecCCc
Q 041325 210 VDTVSALALS----SDGSL-LYSTSWDRTFKIWRTSD------FRCLE-----SVK------NAHDDAINAIVVSKSNDG 267 (450)
Q Consensus 210 ~~~v~~~~~~----~~~~~-l~~~~~dg~i~iwd~~~------~~~~~-----~~~------~~~~~~v~~~~~~~~~~~ 267 (450)
...|.+++|+ |++++ |++++.||.|++||+.+ ++.+. .+. ..|...|.+++|+|++
T Consensus 121 ~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-- 198 (397)
T 1sq9_A 121 KHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-- 198 (397)
T ss_dssp GSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS--
T ss_pred CCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc--
Confidence 5899999999 99999 99999999999999988 66555 553 2578899999999854
Q ss_pred EEEEEcCCCcEEEEeCcchhhhccccchhhhhHhh---c---ccceEEEEEcCCCCEEEEeeCC---CcEEEEEcCCCce
Q 041325 268 FVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEK---H---KSAVTALALSTDGTVLYSGACD---RSILVWERDQGNY 338 (450)
Q Consensus 268 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~---~---~~~i~~l~~~~~~~~l~~g~~d---g~i~vwd~~~~~~ 338 (450)
++++++.||.|++||+++++ .+..+.. | ...|.+++|+|++++|++++.| |.|++||+++++.
T Consensus 199 ~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~ 270 (397)
T 1sq9_A 199 LIATGFNNGTVQISELSTLR--------PLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGER 270 (397)
T ss_dssp EEEEECTTSEEEEEETTTTE--------EEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCE
T ss_pred eEEEEeCCCcEEEEECCCCc--------eeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCCcc
Confidence 99999999999999997765 5556666 7 8999999999999999999999 9999999998876
Q ss_pred eeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEec------CC----
Q 041325 339 IVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLE------GH---- 406 (450)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~------~h---- 406 (450)
+..+...............|...|.+++|+ +++|++++.||.|++||+.++ +++..+. +|
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~ 342 (397)
T 1sq9_A 271 IGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK--------ERITTLNMHCDDIEIEEDI 342 (397)
T ss_dssp EEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT--------EEEEEEECCGGGCSSGGGC
T ss_pred cceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC--------ceeEEEecccCcccchhhh
Confidence 532211000000000011189999999998 459999999999999999874 6777777 77
Q ss_pred -----------CcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 407 -----------RRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 407 -----------~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
...|++++|+|++.... ..+.++.+|++++.||.|++|+++
T Consensus 343 ~~g~~~~~~~~~~~v~~~~~~~~g~~~~---~~~~~~~~l~s~~~dg~i~iw~~~ 394 (397)
T 1sq9_A 343 LAVDEHGDSLAEPGVFDVKFLKKGWRSG---MGADLNESLCCVCLDRSIRWFREA 394 (397)
T ss_dssp CCBCTTSCBCSSCCEEEEEEECTTTSBS---TTCTTSCEEEEEETTTEEEEEEEE
T ss_pred hccccccccccCCceeEEEecccccccc---ccccccceEEEecCCCcEEEEEcC
Confidence 99999999999982000 000001189999999999999974
No 22
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=5.4e-41 Score=329.41 Aligned_cols=292 Identities=24% Similarity=0.396 Sum_probs=233.9
Q ss_pred eeeeEEeecCCCcceEEEEE---eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-
Q 041325 64 QCSATLKVKGNSSYIPSLAI---AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~---d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~- 139 (450)
+....++ +|.+.|+++++ ++++|+||+.||+|++|++.+..... ......+.+|...|.+++|+++.
T Consensus 373 ~~~~~l~--~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~-------~~~~~~~~~h~~~v~~v~~s~~g~ 443 (694)
T 3dm0_A 373 VLKGTMR--AHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAY-------GVAQRRLTGHSHFVEDVVLSSDGQ 443 (694)
T ss_dssp EEEEEEE--CCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCS-------CEEEEEEECCSSCEEEEEECTTSS
T ss_pred chhhhcc--cCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCccc-------ccccceecCCCCcEEEEEECCCCC
Confidence 3445677 99999999999 36899999999999999987653211 01122477999999999999876
Q ss_pred -EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEE
Q 041325 140 -LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALAL 218 (450)
Q Consensus 140 -l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 218 (450)
|++|+.||+|++||+.++.. ...+.+|.+.|.+++|
T Consensus 444 ~l~sgs~Dg~v~vwd~~~~~~-------------------------------------------~~~~~~h~~~v~~~~~ 480 (694)
T 3dm0_A 444 FALSGSWDGELRLWDLAAGVS-------------------------------------------TRRFVGHTKDVLSVAF 480 (694)
T ss_dssp EEEEEETTSEEEEEETTTTEE-------------------------------------------EEEEECCSSCEEEEEE
T ss_pred EEEEEeCCCcEEEEECCCCcc-------------------------------------------eeEEeCCCCCEEEEEE
Confidence 99999999999999988721 2234579999999999
Q ss_pred ccCCCEEEEEeCCCcEEEEecCCCeEEEEee--cccccceEEEEEeecCC-cEEEEEcCCCcEEEEeCcchhhhccccch
Q 041325 219 SSDGSLLYSTSWDRTFKIWRTSDFRCLESVK--NAHDDAINAIVVSKSND-GFVYTGSADTKIKVWKKLRAALQVNKKHS 295 (450)
Q Consensus 219 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~-~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 295 (450)
+|++++|++|+.|++|++||........... ..|...|.+++|+|+.. ..+++++.|+.|++||+++.+
T Consensus 481 s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~-------- 552 (694)
T 3dm0_A 481 SLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK-------- 552 (694)
T ss_dssp CTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCC--------
T ss_pred eCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCc--------
Confidence 9999999999999999999987554333222 25788899999998653 479999999999999997665
Q ss_pred hhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-eEEE
Q 041325 296 LVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFS 374 (450)
Q Consensus 296 ~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s 374 (450)
....+.+|...|++++|+|++++|++|+.||.|++||+++++.+. .+. +...|.+++|+++ .+++
T Consensus 553 ~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~-------------~~~-~~~~v~~~~~sp~~~~l~ 618 (694)
T 3dm0_A 553 LRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLY-------------SLE-ANSVIHALCFSPNRYWLC 618 (694)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEE-------------CCB-CSSCEEEEEECSSSSEEE
T ss_pred EEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEE-------------Eec-CCCcEEEEEEcCCCcEEE
Confidence 556677899999999999999999999999999999999887652 222 3467899999965 5555
Q ss_pred EeCCCeEEEeeCCCCccccCCCceeEEEecC-------------------CCcceEEEEEEecCCCCCCCCCCCCceEEE
Q 041325 375 GSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG-------------------HRRPVKCLTAVVDSDYSNRNSDHSSTSFLV 435 (450)
Q Consensus 375 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-------------------h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l 435 (450)
++.|+.|++||++++ ..+..+.. +...+++++|+|+++ +|
T Consensus 619 ~~~~~~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~-------------~l 677 (694)
T 3dm0_A 619 AATEHGIKIWDLESK--------SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGS-------------TL 677 (694)
T ss_dssp EEETTEEEEEETTTT--------EEEEEECCCCC----------------CCCCEEEEEECTTSS-------------EE
T ss_pred EEcCCCEEEEECCCC--------CChhhhccccccccccccccccccCCceeEEeeeEEEcCCCC-------------EE
Confidence 566778999999875 33333322 122478999999999 99
Q ss_pred EEcccCCcEEEEEeC
Q 041325 436 YSGSLDCEIKIWQIR 450 (450)
Q Consensus 436 ~s~~~Dg~i~iw~l~ 450 (450)
++|+.||.|+||++.
T Consensus 678 ~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 678 FSGYTDGVIRVWGIG 692 (694)
T ss_dssp EEEETTSEEEEEEC-
T ss_pred EEEcCCCeEEEEecc
Confidence 999999999999974
No 23
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-40 Score=300.92 Aligned_cols=292 Identities=14% Similarity=0.249 Sum_probs=244.7
Q ss_pred CCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe
Q 041325 59 AASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL 136 (450)
Q Consensus 59 ~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 136 (450)
....+...+.+.+.+|...|++++| ++++|++|+.||.|++||+.+++.... +.+|...|.+++|+
T Consensus 16 ~~~~G~~~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~------------~~~h~~~v~~~~~~ 83 (369)
T 3zwl_B 16 LYFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGT------------LDGHTGTIWSIDVD 83 (369)
T ss_dssp CCSSCCSEEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEE------------ECCCSSCEEEEEEC
T ss_pred eEEeccccccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhh------------hhhcCCcEEEEEEc
Confidence 3444566666666699999999999 799999999999999999998886665 67899999999999
Q ss_pred CCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceE
Q 041325 137 GDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVS 214 (450)
Q Consensus 137 ~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 214 (450)
++. |++++.||.|++||+.+++. +..+ .+...+.
T Consensus 84 ~~~~~l~s~~~dg~i~iwd~~~~~~----------------~~~~----------------------------~~~~~v~ 119 (369)
T 3zwl_B 84 CFTKYCVTGSADYSIKLWDVSNGQC----------------VATW----------------------------KSPVPVK 119 (369)
T ss_dssp TTSSEEEEEETTTEEEEEETTTCCE----------------EEEE----------------------------ECSSCEE
T ss_pred CCCCEEEEEeCCCeEEEEECCCCcE----------------EEEe----------------------------ecCCCeE
Confidence 766 99999999999999998732 1111 2667899
Q ss_pred EEEEccCCCEEEEEeCC-----CcEEEEecCCCeE-----------EEEeeccccc--ceEEEEEeecCCcEEEEEcCCC
Q 041325 215 ALALSSDGSLLYSTSWD-----RTFKIWRTSDFRC-----------LESVKNAHDD--AINAIVVSKSNDGFVYTGSADT 276 (450)
Q Consensus 215 ~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~-----------~~~~~~~~~~--~v~~~~~~~~~~~~l~~~~~dg 276 (450)
+++|+|+++++++++.+ +.|++||+..... ...+. .+.. .+.+++|+|++. ++++++.||
T Consensus 120 ~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~l~~~~~dg 197 (369)
T 3zwl_B 120 RVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKII-THEGLDAATVAGWSTKGK-YIIAGHKDG 197 (369)
T ss_dssp EEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEE-CCTTCCCEEEEEECGGGC-EEEEEETTS
T ss_pred EEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeecc-CCcCccceeEEEEcCCCC-EEEEEcCCC
Confidence 99999999999999998 9999999876532 22222 3444 899999998544 899999999
Q ss_pred cEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeecccc
Q 041325 277 KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALR 356 (450)
Q Consensus 277 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 356 (450)
.|++||+++.. .....+..|...|.+++|+|++++|++++.||.|++||+++++.+ ..+.
T Consensus 198 ~i~i~d~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~-------------~~~~ 257 (369)
T 3zwl_B 198 KISKYDVSNNY-------EYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVL-------------KKYE 257 (369)
T ss_dssp EEEEEETTTTT-------EEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE-------------EEEE
T ss_pred EEEEEECCCCc-------EeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCcee-------------eeec
Confidence 99999997622 155666778999999999999999999999999999999988755 2222
Q ss_pred CCccceEEEEEeC--CeEEEEeCCC--------------eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 357 GHTKAILCLAVVS--NLLFSGSSDN--------------TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 357 ~~~~~v~~~~~~~--~~l~s~~~dg--------------~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
+...+.+++|++ +++++++.++ .+++||..++ +.+..+.+|...|++++|+|+++
T Consensus 258 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~--------~~~~~~~~~~~~v~~~~~s~~~~ 328 (369)
T 3zwl_B 258 -TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE--------EEIGRVQGHFGPLNTVAISPQGT 328 (369)
T ss_dssp -CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC--------CEEEEEECCSSCEEEEEECTTSS
T ss_pred -CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC--------cchhheecccCcEEEEEECCCCC
Confidence 677889999984 4899999888 8999999874 67888899999999999999999
Q ss_pred CCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 421 YSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 421 ~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+|++++.||.|++|+++
T Consensus 329 -------------~l~s~~~dg~v~iw~~~ 345 (369)
T 3zwl_B 329 -------------SYASGGEDGFIRLHHFE 345 (369)
T ss_dssp -------------EEEEEETTSEEEEEEEC
T ss_pred -------------EEEEEcCCCeEEEEECc
Confidence 99999999999999984
No 24
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.4e-40 Score=295.57 Aligned_cols=320 Identities=16% Similarity=0.272 Sum_probs=254.7
Q ss_pred ccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEE
Q 041325 13 RNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYG 90 (450)
Q Consensus 13 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~t 90 (450)
++..+.|+|++..+........+.. .......+.+ ... +|...|++++| ++++|++
T Consensus 11 ~v~~~~~s~dg~~~~~~~~~~~~~~-------------------~~~~~~~~~~-~~~--~h~~~v~~~~~~~~~~~l~~ 68 (337)
T 1gxr_A 11 PAYSFHVTADGQMQPVPFPPDALIG-------------------PGIPRHARQI-NTL--NHGEVVCAVTISNPTRHVYT 68 (337)
T ss_dssp ECCEEEECSSSCEEECCCCTTSSSS-------------------TTCCSEEEEE-EEE--CCSSCCCEEEECSSSSEEEE
T ss_pred ceeEEEECCCCCEEEeecCCCcEec-------------------cccCCccccc-eec--cCCCceEEEEEecCCcEEEE
Confidence 5667888898888876543332211 0111112222 223 89999999999 7999999
Q ss_pred eeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcc
Q 041325 91 GSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKL 168 (450)
Q Consensus 91 gs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 168 (450)
++ ||.|++||+.++...... ......+|...|.+++|+++. |++++.||.|++||+++++.
T Consensus 69 ~~-dg~i~iw~~~~~~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~--------- 131 (337)
T 1gxr_A 69 GG-KGCVKVWDISHPGNKSPV-------SQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTP--------- 131 (337)
T ss_dssp EC-BSEEEEEETTSTTCCSCS-------EEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC-----------
T ss_pred cC-CCeEEEEECCCCCceeee-------ecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCc---------
Confidence 99 999999999876532221 111123788999999999876 99999999999999987631
Q ss_pred cccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEe
Q 041325 169 KNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESV 248 (450)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 248 (450)
.....+..|...|.+++|+|+++++++++.||.|++||+++++.+..+
T Consensus 132 --------------------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~ 179 (337)
T 1gxr_A 132 --------------------------------RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF 179 (337)
T ss_dssp --------------------------------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred --------------------------------ceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeee
Confidence 012233468889999999999999999999999999999999998888
Q ss_pred ecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcE
Q 041325 249 KNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSI 328 (450)
Q Consensus 249 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i 328 (450)
. .|...+.+++|+|+ ..++++++.||.|++||+++++ ....+ .+...+.+++|+|++++|++++.|+.|
T Consensus 180 ~-~~~~~i~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~--------~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~i 248 (337)
T 1gxr_A 180 Q-GHTDGASCIDISND-GTKLWTGGLDNTVRSWDLREGR--------QLQQH-DFTSQIFSLGYCPTGEWLAVGMESSNV 248 (337)
T ss_dssp C-CCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTTE--------EEEEE-ECSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred e-cccCceEEEEECCC-CCEEEEEecCCcEEEEECCCCc--------eEeee-cCCCceEEEEECCCCCEEEEEcCCCcE
Confidence 7 78999999999984 4589999999999999997765 23332 367889999999999999999999999
Q ss_pred EEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCC
Q 041325 329 LVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGH 406 (450)
Q Consensus 329 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h 406 (450)
++||+++++. ..+..|...|.+++|++ ++|++++.||.|++||+.++ +.+. ...|
T Consensus 249 ~~~~~~~~~~--------------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~--------~~~~-~~~~ 305 (337)
T 1gxr_A 249 EVLHVNKPDK--------------YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG--------ASIF-QSKE 305 (337)
T ss_dssp EEEETTSSCE--------------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC--------CEEE-EEEC
T ss_pred EEEECCCCCe--------------EEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCC--------eEEE-EecC
Confidence 9999997653 24567889999999984 59999999999999999874 3333 3458
Q ss_pred CcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 407 RRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 407 ~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
...|.+++|+|+++ +|++++.||.|++|++.
T Consensus 306 ~~~v~~~~~s~~~~-------------~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 306 SSSVLSCDISVDDK-------------YIVTGSGDKKATVYEVI 336 (337)
T ss_dssp SSCEEEEEECTTSC-------------EEEEEETTSCEEEEEEE
T ss_pred CCcEEEEEECCCCC-------------EEEEecCCCeEEEEEEe
Confidence 89999999999999 99999999999999973
No 25
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=1e-40 Score=304.48 Aligned_cols=301 Identities=17% Similarity=0.161 Sum_probs=235.4
Q ss_pred ccceeeeEEeecCCCcceEEEEE--eC-CEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC
Q 041325 61 SEHQCSATLKVKGNSSYIPSLAI--AG-KLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG 137 (450)
Q Consensus 61 ~~~~~~~~l~~~~h~~~v~~~~~--d~-~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 137 (450)
...++.+++. +|...|++++| ++ ++|++|+.||.|+|||+.+++...... ..+|...|.+++|++
T Consensus 61 ~~~~~~~~~~--~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----------~~~h~~~v~~~~~~~ 128 (383)
T 3ei3_B 61 KSYKLHRTAS--PFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQ----------GMGPGDAITGMKFNQ 128 (383)
T ss_dssp TTCEEEEEEC--CCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEEC----------CCSTTCBEEEEEEET
T ss_pred cccceEEecc--CCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeee----------cCCcCCceeEEEeCC
Confidence 3456777887 99999999999 56 899999999999999999877655411 237999999999998
Q ss_pred -Ce--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceE
Q 041325 138 -DK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVS 214 (450)
Q Consensus 138 -~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 214 (450)
+. |++++.|+.|++||++..... .+. ....|...|.
T Consensus 129 ~~~~~l~s~~~d~~i~iwd~~~~~~~-----------------~~~------------------------~~~~~~~~v~ 167 (383)
T 3ei3_B 129 FNTNQLFVSSIRGATTLRDFSGSVIQ-----------------VFA------------------------KTDSWDYWYC 167 (383)
T ss_dssp TEEEEEEEEETTTEEEEEETTSCEEE-----------------EEE------------------------CCCCSSCCEE
T ss_pred CCCCEEEEEeCCCEEEEEECCCCceE-----------------EEe------------------------ccCCCCCCeE
Confidence 33 999999999999999864211 000 0113567899
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccc
Q 041325 215 ALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKH 294 (450)
Q Consensus 215 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 294 (450)
+++|+|++++|++++.|+.|++||+ +++.+..+. .|...|.+++|+|++..++++++.|+.|++||+++.+ ...
T Consensus 168 ~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~----~~~ 241 (383)
T 3ei3_B 168 CVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEK-LHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIK----DKN 241 (383)
T ss_dssp EEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEE-CSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCC----STT
T ss_pred EEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEec-cCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCC----ccc
Confidence 9999999999999999999999999 577778877 7999999999999666589999999999999998743 111
Q ss_pred hhhhhHhhcccceEEEEEcC-CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCc----------cceE
Q 041325 295 SLVQTLEKHKSAVTALALST-DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT----------KAIL 363 (450)
Q Consensus 295 ~~~~~~~~~~~~i~~l~~~~-~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~v~ 363 (450)
..+..+ .|...|.+++|+| ++++|++++.|+.|++||+++++.+..+.... .....|. ..+.
T Consensus 242 ~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~p~~~~~ 314 (383)
T 3ei3_B 242 SYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHP------HRQFQHLTPIKATWHPMYDLI 314 (383)
T ss_dssp CEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECC------BCCCTTSCCCCCEECSSSSEE
T ss_pred ceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcccccccccc------ccccccccceEEeccCCCCce
Confidence 233333 5889999999999 99999999999999999999876542211100 0111122 3344
Q ss_pred EEEEeCC-eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecC--CCcceEEEEEEecCCCCCCCCCCCCceEEEEEccc
Q 041325 364 CLAVVSN-LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG--HRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSL 440 (450)
Q Consensus 364 ~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~ 440 (450)
.++++++ .+ +++.||.|++||+.++ +++..+.+ |...+..++|+|++. +|++|+
T Consensus 315 ~~~~s~dg~~-s~s~d~~i~iwd~~~~--------~~~~~l~~~~~~~~~~~~~~s~~g~-------------~l~s~s- 371 (383)
T 3ei3_B 315 VAGRYPDDQL-LLNDKRTIDIYDANSG--------GLVHQLRDPNAAGIISLNKFSPTGD-------------VLASGM- 371 (383)
T ss_dssp EEECBCCTTT-CTTCCCCEEEEETTTC--------CEEEEECBTTBCSCCCEEEECTTSS-------------EEEEEE-
T ss_pred EEEecCCccc-ccCCCCeEEEEecCCC--------ceeeeecCCCCCceEEEEEEecCcc-------------EEEEec-
Confidence 5555533 33 7889999999999875 56777776 567788889999999 899997
Q ss_pred CCcEEEEEeC
Q 041325 441 DCEIKIWQIR 450 (450)
Q Consensus 441 Dg~i~iw~l~ 450 (450)
||.|++||++
T Consensus 372 d~~i~iw~~~ 381 (383)
T 3ei3_B 372 GFNILIWNRE 381 (383)
T ss_dssp TTEEEEEECC
T ss_pred CCcEEEEecC
Confidence 9999999985
No 26
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-40 Score=293.23 Aligned_cols=285 Identities=23% Similarity=0.385 Sum_probs=243.3
Q ss_pred ccceeeeEEeecCCCcceEEEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe
Q 041325 61 SEHQCSATLKVKGNSSYIPSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK 139 (450)
Q Consensus 61 ~~~~~~~~l~~~~h~~~v~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 139 (450)
...++.+++. +|.+.|++++| ++++|++|+.||.|++||+.+++.... +..|...|.+++|+++.
T Consensus 6 ~~~~~~~~l~--~h~~~v~~~~~~~~~~l~s~~~dg~v~vw~~~~~~~~~~------------~~~~~~~v~~~~~~~~~ 71 (313)
T 3odt_A 6 TGYQLSATLK--GHDQDVRDVVAVDDSKVASVSRDGTVRLWSKDDQWLGTV------------VYTGQGFLNSVCYDSEK 71 (313)
T ss_dssp CCCEEEEEEC--CCSSCEEEEEEEETTEEEEEETTSEEEEEEESSSEEEEE------------EEECSSCEEEEEEETTT
T ss_pred ccHHHHHHhh--CCCCCcEEEEecCCCEEEEEEcCCcEEEEECCCCEEEEE------------eecCCccEEEEEECCCC
Confidence 3457888888 99999999999 899999999999999999987765554 66889999999999876
Q ss_pred --EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEE
Q 041325 140 --LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALA 217 (450)
Q Consensus 140 --l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 217 (450)
+++++.||.|++|++...... .....+.+|...|.+++
T Consensus 72 ~~l~~~~~dg~i~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~i~~~~ 111 (313)
T 3odt_A 72 ELLLFGGKDTMINGVPLFATSGE----------------------------------------DPLYTLIGHQGNVCSLS 111 (313)
T ss_dssp TEEEEEETTSCEEEEETTCCTTS----------------------------------------CC-CEECCCSSCEEEEE
T ss_pred CEEEEecCCCeEEEEEeeecCCC----------------------------------------CcccchhhcccCEEEEE
Confidence 999999999999999765210 11223446889999999
Q ss_pred EccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhh
Q 041325 218 LSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLV 297 (450)
Q Consensus 218 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 297 (450)
| +++++++++.||.|++|| .++....+. .|...+.++.+.|.....+++++.||.|++||... ..
T Consensus 112 ~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~----------~~ 176 (313)
T 3odt_A 112 F--QDGVVISGSWDKTAKVWK--EGSLVYNLQ-AHNASVWDAKVVSFSENKFLTASADKTIKLWQNDK----------VI 176 (313)
T ss_dssp E--ETTEEEEEETTSEEEEEE--TTEEEEEEE-CCSSCEEEEEEEETTTTEEEEEETTSCEEEEETTE----------EE
T ss_pred e--cCCEEEEEeCCCCEEEEc--CCcEEEecc-cCCCceeEEEEccCCCCEEEEEECCCCEEEEecCc----------eE
Confidence 9 578999999999999999 667777777 78999999999986677999999999999999433 22
Q ss_pred hhHhh-cccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-eEEEE
Q 041325 298 QTLEK-HKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFSG 375 (450)
Q Consensus 298 ~~~~~-~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~ 375 (450)
..+.. |...+.+++|+|++. +++++.||.|++||+++++.+ ..+..|...|++++|+++ .|+++
T Consensus 177 ~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~-------------~~~~~~~~~i~~~~~~~~~~l~~~ 242 (313)
T 3odt_A 177 KTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVL-------------RTYEGHESFVYCIKLLPNGDIVSC 242 (313)
T ss_dssp EEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEE-------------EEEECCSSCEEEEEECTTSCEEEE
T ss_pred EEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhh-------------hhhhcCCceEEEEEEecCCCEEEE
Confidence 33344 788999999999988 999999999999999988755 566789999999999966 89999
Q ss_pred eCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 376 SSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 376 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+.||.|++||+.++ +++..+..|...|.+++|+|++. +++++.||.|++||++
T Consensus 243 ~~dg~v~iwd~~~~--------~~~~~~~~~~~~i~~~~~~~~~~--------------~~~~~~dg~i~iw~~~ 295 (313)
T 3odt_A 243 GEDRTVRIWSKENG--------SLKQVITLPAISIWSVDCMSNGD--------------IIVGSSDNLVRIFSQE 295 (313)
T ss_dssp ETTSEEEEECTTTC--------CEEEEEECSSSCEEEEEECTTSC--------------EEEEETTSCEEEEESC
T ss_pred ecCCEEEEEECCCC--------ceeEEEeccCceEEEEEEccCCC--------------EEEEeCCCcEEEEeCC
Confidence 99999999999875 67888889999999999999987 5568999999999974
No 27
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=7.1e-41 Score=294.99 Aligned_cols=244 Identities=23% Similarity=0.361 Sum_probs=212.2
Q ss_pred EEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEe
Q 041325 122 VATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVR 199 (450)
Q Consensus 122 ~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (450)
.+.+|.+.|.+++|+|+. |++++.||+|++||++++..
T Consensus 8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~---------------------------------------- 47 (304)
T 2ynn_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVE---------------------------------------- 47 (304)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEE----------------------------------------
T ss_pred eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCce----------------------------------------
Confidence 478999999999999887 99999999999999998721
Q ss_pred ecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEE
Q 041325 200 RHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIK 279 (450)
Q Consensus 200 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 279 (450)
...+..|...|.+++|+|++++|++|+.|+.|++||+.+++.+..+. .|...|.+++|+|++ .++++|+.||.|+
T Consensus 48 ---~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~-~~l~sgs~D~~v~ 122 (304)
T 2ynn_A 48 ---VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFE-AHPDYIRSIAVHPTK-PYVLSGSDDLTVK 122 (304)
T ss_dssp ---EEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSS-SEEEEEETTSCEE
T ss_pred ---eEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEe-CCCCcEEEEEEcCCC-CEEEEECCCCeEE
Confidence 22334688899999999999999999999999999999999999988 899999999999954 4899999999999
Q ss_pred EEeCcchhhhccccchhhhhHhhcccceEEEEEcC-CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC
Q 041325 280 VWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST-DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358 (450)
Q Consensus 280 vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (450)
+||++++. .....+.+|...|.+++|+| ++.+|++|+.|+.|++||+++++... ....+|
T Consensus 123 lWd~~~~~-------~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~------------~~~~~~ 183 (304)
T 2ynn_A 123 LWNWENNW-------ALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNF------------TLTTGQ 183 (304)
T ss_dssp EEEGGGTT-------EEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSE------------EEECCC
T ss_pred EEECCCCc-------chhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccc------------eeccCC
Confidence 99987653 13455678999999999999 67899999999999999998765331 223456
Q ss_pred ccceEEEEEeC----CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEE
Q 041325 359 TKAILCLAVVS----NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFL 434 (450)
Q Consensus 359 ~~~v~~~~~~~----~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~ 434 (450)
...+..+.+.+ .+|++|+.|+.|++||++++ +++..+.+|...|.+++|+|++. +
T Consensus 184 ~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~--------~~~~~~~~h~~~v~~~~~~p~~~-------------~ 242 (304)
T 2ynn_A 184 ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK--------SCVATLEGHMSNVSFAVFHPTLP-------------I 242 (304)
T ss_dssp TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT--------EEEEEEECCSSCEEEEEECSSSS-------------E
T ss_pred cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC--------ccceeeCCCCCCEEEEEECCCCC-------------E
Confidence 67888888863 49999999999999999874 78899999999999999999999 9
Q ss_pred EEEcccCCcEEEEEeC
Q 041325 435 VYSGSLDCEIKIWQIR 450 (450)
Q Consensus 435 l~s~~~Dg~i~iw~l~ 450 (450)
|++|+.||+|++||++
T Consensus 243 l~s~s~Dg~i~iWd~~ 258 (304)
T 2ynn_A 243 IISGSEDGTLKIWNSS 258 (304)
T ss_dssp EEEEETTSCEEEEETT
T ss_pred EEEEcCCCeEEEEECC
Confidence 9999999999999974
No 28
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=4.5e-40 Score=316.83 Aligned_cols=319 Identities=25% Similarity=0.427 Sum_probs=257.8
Q ss_pred cceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe
Q 041325 62 EHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK 139 (450)
Q Consensus 62 ~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 139 (450)
+++.++.+. +|...|.+++| |+++|++++.||.|++||... +.... +.+|...|.+++|+++.
T Consensus 210 ~~~~~~~~~--~~~~~v~~~~~s~dg~~l~~~~~d~~i~~w~~~~-~~~~~------------~~~~~~~v~~v~~~~d~ 274 (577)
T 2ymu_A 210 NGQLLQTLT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQT------------LTGHSSSVNGVAFRPDG 274 (577)
T ss_dssp TSCEEEEEE--CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS-CEEEE------------ECCCSSCEEEEEECTTS
T ss_pred CCcEEEEEe--cCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCC-CEEEE------------EecCCCCEEEEEEcCCC
Confidence 456778888 99999999999 799999999999999999653 33332 67899999999999876
Q ss_pred --EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecc---eeeeecCCCceE
Q 041325 140 --LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHK---KCTWVHHVDTVS 214 (450)
Q Consensus 140 --l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~v~ 214 (450)
+++++.|+.|++|+......... ... ......+... .+....+....++.+.++... ...+.+|...+.
T Consensus 275 ~~l~~~~~d~~i~~w~~~~~~~~~~-~~h---~~~v~~~~~~--~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~ 348 (577)
T 2ymu_A 275 QTIASASDDKTVKLWNRNGQLLQTL-TGH---SSSVWGVAFS--PDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVW 348 (577)
T ss_dssp SEEEEEETTSCEEEEETTSCEEEEE-CCC---SSCEEEEEEC--TTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEE
T ss_pred CEEEEEeCCCEEEEEeCCCcEEEEE-ecC---CCCeEEEEEC--CCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEE
Confidence 99999999999999765432211 111 1111222222 233445555566677776532 345678999999
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccc
Q 041325 215 ALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKH 294 (450)
Q Consensus 215 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 294 (450)
+++|+|+++++++++.|+.|++||. +++.+..+. .|...|.+++|+|++ .+|++++.|+.|++||... +
T Consensus 349 ~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~-~~~~~v~~~~~s~dg-~~l~~~~~d~~v~~~~~~~-~------- 417 (577)
T 2ymu_A 349 GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVRGVAFSPDG-QTIASASDDKTVKLWNRNG-Q------- 417 (577)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEE-CCSSCEEEEEECTTS-SCEEEEETTSEEEEECTTC-C-------
T ss_pred EEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEec-CCCCCeEEEEECCCC-CEEEEEeCCCEEEEEeCCC-C-------
Confidence 9999999999999999999999996 567777777 799999999999854 4899999999999999532 2
Q ss_pred hhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eE
Q 041325 295 SLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LL 372 (450)
Q Consensus 295 ~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l 372 (450)
.+..+.+|...|++++|+|++++|++++.|+.|++||.. ++. ...+.+|...|++++|+++ +|
T Consensus 418 -~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~-------------~~~~~~~~~~v~~~~~spd~~~l 482 (577)
T 2ymu_A 418 -LLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQL-------------LQTLTGHSSSVRGVAFSPDGQTI 482 (577)
T ss_dssp -EEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCE-------------EEEEECCSSCEEEEEECTTSCEE
T ss_pred -EEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCE-------------EEEEcCCCCCEEEEEEcCCCCEE
Confidence 455667899999999999999999999999999999965 332 2567789999999999854 99
Q ss_pred EEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 373 FSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 373 ~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
++++.|+.|++||... +++..+.+|...|++++|+|+++ +|++++.||.|++||+
T Consensus 483 as~~~d~~i~iw~~~~---------~~~~~~~~h~~~v~~l~~s~dg~-------------~l~s~~~dg~v~lwd~ 537 (577)
T 2ymu_A 483 ASASDDKTVKLWNRNG---------QLLQTLTGHSSSVRGVAFSPDGQ-------------TIASASDDKTVKLWNR 537 (577)
T ss_dssp EEEETTSEEEEEETTS---------CEEEEEECCSSCEEEEEECTTSS-------------CEEEEETTSEEEEECT
T ss_pred EEEeCCCEEEEEcCCC---------CEEEEEeCCCCCEEEEEEcCCCC-------------EEEEEECcCEEEEEeC
Confidence 9999999999999652 67888999999999999999999 8999999999999985
No 29
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=4.6e-40 Score=298.26 Aligned_cols=300 Identities=14% Similarity=0.232 Sum_probs=241.9
Q ss_pred CCCcceEEEEEe------CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC------eE
Q 041325 73 GNSSYIPSLAIA------GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD------KL 140 (450)
Q Consensus 73 ~h~~~v~~~~~d------~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~------~l 140 (450)
+|...|++++|+ ...+++++.++.|++||+.+++........ ....|...|.+++|+++ .|
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~~~~l 88 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSY-------VDADADENFYTCAWTYDSNTSHPLL 88 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEE-------ECSCTTCCEEEEEEEECTTTCCEEE
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeec-------cccCCCCcEEEEEeccCCCCCCCEE
Confidence 899999999995 456777777789999999977655442211 11237789999999977 39
Q ss_pred EEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc
Q 041325 141 FSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS 220 (450)
Q Consensus 141 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 220 (450)
++|+.||.|++||+.+++. ...+.+|...|.+++|+|
T Consensus 89 ~~~~~dg~i~v~d~~~~~~-------------------------------------------~~~~~~~~~~i~~~~~~~ 125 (366)
T 3k26_A 89 AVAGSRGIIRIINPITMQC-------------------------------------------IKHYVGHGNAINELKFHP 125 (366)
T ss_dssp EEEETTCEEEEECTTTCCE-------------------------------------------EEEEESCCSCEEEEEECS
T ss_pred EEecCCCEEEEEEchhceE-------------------------------------------eeeecCCCCcEEEEEECC
Confidence 9999999999999987732 223346899999999999
Q ss_pred -CCCEEEEEeCCCcEEEEecCCCeEEEEee--cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhh
Q 041325 221 -DGSLLYSTSWDRTFKIWRTSDFRCLESVK--NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLV 297 (450)
Q Consensus 221 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 297 (450)
++++|++++.||.|++||+++++.+..+. ..|...|.+++|+|+ ..++++++.||.|++||+++++ ..
T Consensus 126 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~--------~~ 196 (366)
T 3k26_A 126 RDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLL-GEKIMSCGMDHSLKLWRINSKR--------MM 196 (366)
T ss_dssp SCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTT-SSEEEEEETTSCEEEEESCSHH--------HH
T ss_pred CCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCC-CCEEEEecCCCCEEEEECCCCc--------cc
Confidence 99999999999999999999999888873 278999999999984 4589999999999999998766 44
Q ss_pred hhHhh----------------------------cccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeee-CCCCCCc
Q 041325 298 QTLEK----------------------------HKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVD-GDDDSGH 348 (450)
Q Consensus 298 ~~~~~----------------------------~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~-~~~~~~~ 348 (450)
..+.. |...|.+++|+ +++|++++.||.|++||+.+++.... .......
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~ 274 (366)
T 3k26_A 197 NAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESN 274 (366)
T ss_dssp HHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCC
T ss_pred cccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcc
Confidence 44443 88999999998 77999999999999999988764221 1222223
Q ss_pred eeeeccccCCccceEEEEEe----CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCC--CcceEEEEEEecCCCC
Q 041325 349 MVLKGALRGHTKAILCLAVV----SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGH--RRPVKCLTAVVDSDYS 422 (450)
Q Consensus 349 ~~~~~~~~~~~~~v~~~~~~----~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~ 422 (450)
......+..|...|.+++|+ +++|++|+.||.|++||+.++. ........+.+| ...|++++|+|+++
T Consensus 275 ~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~v~~~~~s~~~~-- 348 (366)
T 3k26_A 275 VTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED----PHKAKCTTLTHHKCGAAIRQTSFSRDSS-- 348 (366)
T ss_dssp EEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS----GGGCEEEEECCTTCCSCEEEEEECTTSS--
T ss_pred hheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC----CccccceEEcccccCCceEEEEeCCCCC--
Confidence 34456777888899888887 5699999999999999998752 112355567777 79999999999999
Q ss_pred CCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 423 NRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 423 ~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+|++++.||.|++||+.
T Consensus 349 -----------~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 349 -----------ILIAVCDDASIWRWDRL 365 (366)
T ss_dssp -----------EEEEEETTSEEEEEEC-
T ss_pred -----------eEEEEeCCCEEEEEEec
Confidence 99999999999999984
No 30
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=8.8e-40 Score=306.16 Aligned_cols=281 Identities=21% Similarity=0.372 Sum_probs=238.8
Q ss_pred eeeEEeecCCCcc-eEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEE
Q 041325 65 CSATLKVKGNSSY-IPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFS 142 (450)
Q Consensus 65 ~~~~l~~~~h~~~-v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s 142 (450)
...++. +|... ++++.+++++|++|+.||.|++||+.+++.... +.+|.+.|.+++|+++. +++
T Consensus 113 ~~~~l~--~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~------------~~~h~~~V~~l~~~~~~~l~s 178 (464)
T 3v7d_B 113 QRTTLR--GHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQ------------LSGHDGGVWALKYAHGGILVS 178 (464)
T ss_dssp EEEEEE--CCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEE------------ECCCSSCEEEEEECSTTEEEE
T ss_pred ceEEEc--CCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCcEEEE------------EeCCCcCEEEEEEcCCCEEEE
Confidence 455677 99887 588889999999999999999999999886665 67999999999999775 999
Q ss_pred EeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc--c
Q 041325 143 AHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS--S 220 (450)
Q Consensus 143 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~ 220 (450)
|+.||+|++||+++++ .+ ..+.+|.+.|.+++|+ +
T Consensus 179 ~s~dg~i~vwd~~~~~----------------~~---------------------------~~~~~h~~~v~~l~~~~~~ 215 (464)
T 3v7d_B 179 GSTDRTVRVWDIKKGC----------------CT---------------------------HVFEGHNSTVRCLDIVEYK 215 (464)
T ss_dssp EETTSCEEEEETTTTE----------------EE---------------------------EEECCCSSCEEEEEEEESS
T ss_pred EeCCCCEEEEECCCCc----------------EE---------------------------EEECCCCCccEEEEEecCC
Confidence 9999999999999872 22 2334689999999998 4
Q ss_pred CCCEEEEEeCCCcEEEEecCCCeE-----------------------EEEeecccccceEEEEEeecCCcEEEEEcCCCc
Q 041325 221 DGSLLYSTSWDRTFKIWRTSDFRC-----------------------LESVKNAHDDAINAIVVSKSNDGFVYTGSADTK 277 (450)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~~~~-----------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 277 (450)
+++++++|+.||.|++||+.++.. +..+. .|...+.++... +.++++++.||.
T Consensus 216 ~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~---~~~l~~~~~d~~ 291 (464)
T 3v7d_B 216 NIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR-GHMASVRTVSGH---GNIVVSGSYDNT 291 (464)
T ss_dssp SCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC-CCSSCEEEEEEE---TTEEEEEETTSC
T ss_pred CCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc-CccceEEEEcCC---CCEEEEEeCCCe
Confidence 788999999999999999987653 22333 677888887543 458999999999
Q ss_pred EEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccC
Q 041325 278 IKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG 357 (450)
Q Consensus 278 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (450)
|++||+++++ .+..+.+|...|.+++|+|++++|++|+.||.|++||+++++.+ ..+.+
T Consensus 292 i~vwd~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~-------------~~~~~ 350 (464)
T 3v7d_B 292 LIVWDVAQMK--------CLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM-------------YTLQG 350 (464)
T ss_dssp EEEEETTTTE--------EEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE-------------EEECC
T ss_pred EEEEECCCCc--------EEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE-------------EEEeC
Confidence 9999997766 56677789999999999999999999999999999999988755 56788
Q ss_pred CccceEEEEEeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEE
Q 041325 358 HTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYS 437 (450)
Q Consensus 358 ~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s 437 (450)
|...|.++.+++++|++++.||.|++||+.++ ...... .|...+..++|++++. ++++
T Consensus 351 h~~~v~~~~~~~~~l~s~s~dg~v~vwd~~~~--------~~~~~~-~~~~~~~~~~~~~~~~-------------~l~~ 408 (464)
T 3v7d_B 351 HTALVGLLRLSDKFLVSAAADGSIRGWDANDY--------SRKFSY-HHTNLSAITTFYVSDN-------------ILVS 408 (464)
T ss_dssp CSSCEEEEEECSSEEEEEETTSEEEEEETTTC--------CEEEEE-ECTTCCCEEEEEECSS-------------EEEE
T ss_pred CCCcEEEEEEcCCEEEEEeCCCcEEEEECCCC--------ceeeee-cCCCCccEEEEEeCCC-------------EEEE
Confidence 99999999999999999999999999999874 233333 3677788899999999 8999
Q ss_pred cccCCcEEEEEeC
Q 041325 438 GSLDCEIKIWQIR 450 (450)
Q Consensus 438 ~~~Dg~i~iw~l~ 450 (450)
|+ ||.|++||++
T Consensus 409 ~~-dg~i~iwd~~ 420 (464)
T 3v7d_B 409 GS-ENQFNIYNLR 420 (464)
T ss_dssp EE-TTEEEEEETT
T ss_pred ec-CCeEEEEECC
Confidence 88 9999999974
No 31
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=4.4e-40 Score=306.32 Aligned_cols=289 Identities=22% Similarity=0.439 Sum_probs=214.5
Q ss_pred CCCccceeeeEEeecCCCcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC
Q 041325 58 PAASEHQCSATLKVKGNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG 137 (450)
Q Consensus 58 ~~~~~~~~~~~l~~~~h~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 137 (450)
+...++++++++. +|...|.+++|++++|++|+.||.|++||+.+++.... +.+|...|.+++|++
T Consensus 144 wd~~~~~~~~~~~--~h~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~------------~~~h~~~v~~~~~~~ 209 (445)
T 2ovr_B 144 WSAVTGKCLRTLV--GHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHT------------LYGHTSTVRCMHLHE 209 (445)
T ss_dssp EETTTCCEEEECC--CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEE------------ECCCSSCEEEEEEET
T ss_pred EECCCCcEEEEEc--CCCCCEEEEEecCCEEEEEeCCCeEEEEECCcCcEEEE------------ECCCCCcEEEEEecC
Confidence 3333444444444 55555555555555555555555555555544443332 334555555555554
Q ss_pred CeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEE
Q 041325 138 DKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALA 217 (450)
Q Consensus 138 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 217 (450)
+.+++|+.||+|++||+.+++ ....+.+|...|.+++
T Consensus 210 ~~l~s~s~dg~i~~wd~~~~~-------------------------------------------~~~~~~~~~~~v~~~~ 246 (445)
T 2ovr_B 210 KRVVSGSRDATLRVWDIETGQ-------------------------------------------CLHVLMGHVAAVRCVQ 246 (445)
T ss_dssp TEEEEEETTSEEEEEESSSCC-------------------------------------------EEEEEECCSSCEEEEE
T ss_pred CEEEEEeCCCEEEEEECCCCc-------------------------------------------EEEEEcCCcccEEEEE
Confidence 445555555555555554431 2234557899999999
Q ss_pred EccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhh
Q 041325 218 LSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLV 297 (450)
Q Consensus 218 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 297 (450)
+ +++++++|+.||.|++||+++++.+..+. .|...|.++.+ ++..+++++.||.|++||+++++ .+
T Consensus 247 ~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~---~~~~l~~~~~d~~i~i~d~~~~~--------~~ 312 (445)
T 2ovr_B 247 Y--DGRRVVSGAYDFMVKVWDPETETCLHTLQ-GHTNRVYSLQF---DGIHVVSGSLDTSIRVWDVETGN--------CI 312 (445)
T ss_dssp E--CSSCEEEEETTSCEEEEEGGGTEEEEEEC-CCSSCEEEEEE---CSSEEEEEETTSCEEEEETTTCC--------EE
T ss_pred E--CCCEEEEEcCCCEEEEEECCCCcEeEEec-CCCCceEEEEE---CCCEEEEEeCCCeEEEEECCCCC--------EE
Confidence 9 68899999999999999999999999887 88999999999 35589999999999999998766 56
Q ss_pred hhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeC
Q 041325 298 QTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSS 377 (450)
Q Consensus 298 ~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~ 377 (450)
..+.+|...+.++.+ ++++|++|+.||.|++||+++++.+.. ......|...|++++|++++|++|+.
T Consensus 313 ~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~----------~~~~~~~~~~v~~~~~~~~~l~s~~~ 380 (445)
T 2ovr_B 313 HTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQT----------LQGPNKHQSAVTCLQFNKNFVITSSD 380 (445)
T ss_dssp EEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEE----------ECSTTSCSSCEEEEEECSSEEEEEET
T ss_pred EEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEE----------EccCCCCCCCEEEEEECCCEEEEEeC
Confidence 667788888988887 467999999999999999998876521 11223488999999999999999999
Q ss_pred CCeEEEeeCCCCccccCCCceeEEEe-----cCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCc----EEEEE
Q 041325 378 DNTIRIWRRSSSVTDHQKGYSCLAVL-----EGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCE----IKIWQ 448 (450)
Q Consensus 378 dg~v~iwd~~~~~~~~~~~~~~~~~~-----~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~----i~iw~ 448 (450)
||.|++||+.++ +.+..+ .+|.+.|.+++|+|++. ++++|+.||+ |.+||
T Consensus 381 dg~v~iwd~~~~--------~~~~~~~~~~~~~~~~~v~~~~~s~~~~-------------~la~~~~dg~~~~~l~v~d 439 (445)
T 2ovr_B 381 DGTVKLWDLKTG--------EFIRNLVTLESGGSGGVVWRIRASNTKL-------------VCAVGSRNGTEETKLLVLD 439 (445)
T ss_dssp TSEEEEEETTTC--------CEEEEEEECTTGGGTCEEEEEEECSSEE-------------EEEEECSSSSSCCEEEEEE
T ss_pred CCeEEEEECCCC--------ceeeeeeccccCCCCceEEEEEecCCEE-------------EEEEcccCCCCccEEEEEE
Confidence 999999999975 455555 57889999999999998 9999999998 99999
Q ss_pred eC
Q 041325 449 IR 450 (450)
Q Consensus 449 l~ 450 (450)
++
T Consensus 440 f~ 441 (445)
T 2ovr_B 440 FD 441 (445)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 32
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-41 Score=314.41 Aligned_cols=351 Identities=16% Similarity=0.180 Sum_probs=260.2
Q ss_pred cccCCCccCCCCC-ccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccce---eeeEEeecCCCcceEEEEE--eC
Q 041325 12 RRNKEPKFQPSSN-HLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQ---CSATLKVKGNSSYIPSLAI--AG 85 (450)
Q Consensus 12 ~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~h~~~v~~~~~--d~ 85 (450)
.++..+.|+|+.. .+.+......+. ..........++...... ++..+ .|...|++++| ++
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~----------~~~~~d~~v~iw~~~~~~~~~~~~~~---~~~~~v~~~~~s~~~ 79 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVD----------ANFSTDSSLELWSLLAADSEKPIASL---QVDSKFNDLDWSHNN 79 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCC----------SSCCCCCCCEEEESSSGGGCSCSCCC---CCSSCEEEEEECSSS
T ss_pred hhcceEeeCCCCCCEEEEEecCcccc----------cccCCCCeEEEEEccCCCCCcEEEEE---ecCCceEEEEECCCC
Confidence 3778899999976 555542221110 111112223333333332 23333 68999999999 79
Q ss_pred CEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC-e--EEEEeCCCeEEEEEcCCCceeEE
Q 041325 86 KLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD-K--LFSAHQDHKIRVWKIDNNTSAYY 162 (450)
Q Consensus 86 ~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~--l~s~~~dg~i~iw~~~~~~~~~~ 162 (450)
++|++|+.||.|++||+...... ......+.+|...|.+++|+++ . |++++.||.|++||+.+.....
T Consensus 80 ~~l~~~~~dg~v~vw~~~~~~~~--------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~- 150 (416)
T 2pm9_A 80 KIIAGALDNGSLELYSTNEANNA--------INSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESP- 150 (416)
T ss_dssp SCEEEEESSSCEEEECCSSTTSC--------CCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCT-
T ss_pred CeEEEEccCCeEEEeeccccccc--------ccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccc-
Confidence 99999999999999999872100 0011236689999999999976 3 9999999999999998873100
Q ss_pred eccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC-CCEEEEEeCCCcEEEEecCC
Q 041325 163 STSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD-GSLLYSTSWDRTFKIWRTSD 241 (450)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~ 241 (450)
..+ ... .......|...|.+++|+|+ +.++++++.||.|++||+++
T Consensus 151 --------~~~-~~~------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~ 197 (416)
T 2pm9_A 151 --------SNY-TPL------------------------TPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKA 197 (416)
T ss_dssp --------TTC-CCB------------------------CCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTT
T ss_pred --------ccc-ccc------------------------ccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCC
Confidence 000 000 00112358889999999998 78999999999999999999
Q ss_pred CeEEEEeeccc-----ccceEEEEEeecCCcEEEEEcCCC---cEEEEeCcchhhhccccchhhhhHh-hcccceEEEEE
Q 041325 242 FRCLESVKNAH-----DDAINAIVVSKSNDGFVYTGSADT---KIKVWKKLRAALQVNKKHSLVQTLE-KHKSAVTALAL 312 (450)
Q Consensus 242 ~~~~~~~~~~~-----~~~v~~~~~~~~~~~~l~~~~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~i~~l~~ 312 (450)
++.+..+.... ...+.+++|+|++..++++++.|+ .|++||+++.. .....+. +|...|.+++|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~-------~~~~~~~~~~~~~v~~~~~ 270 (416)
T 2pm9_A 198 KKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN-------TPLQTLNQGHQKGILSLDW 270 (416)
T ss_dssp TEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-------SCSBCCCSCCSSCEEEEEE
T ss_pred CCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-------CCcEEeecCccCceeEEEe
Confidence 99988887322 788999999997667899999999 99999997753 1445566 78999999999
Q ss_pred cC-CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC---CeEEEEeCCCeEEEeeCCC
Q 041325 313 ST-DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS---NLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 313 ~~-~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~ 388 (450)
+| ++++|++++.||.|++||+++++.+ ..+..|...|.+++|++ .+|++++.||.|++||+..
T Consensus 271 s~~~~~~l~s~~~dg~v~~wd~~~~~~~-------------~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~ 337 (416)
T 2pm9_A 271 CHQDEHLLLSSGRDNTVLLWNPESAEQL-------------SQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQN 337 (416)
T ss_dssp CSSCSSCEEEEESSSEEEEECSSSCCEE-------------EEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCC
T ss_pred CCCCCCeEEEEeCCCCEEEeeCCCCccc-------------eeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccC
Confidence 99 9999999999999999999988755 56678999999999985 5899999999999999987
Q ss_pred CccccCCCc---------eeE------------------EEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccC
Q 041325 389 SVTDHQKGY---------SCL------------------AVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLD 441 (450)
Q Consensus 389 ~~~~~~~~~---------~~~------------------~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~D 441 (450)
......... ..+ .....|..++.+++|+|+++ +|++++.|
T Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-------------~la~~~~d 404 (416)
T 2pm9_A 338 LTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGK-------------LVQITPDG 404 (416)
T ss_dssp CCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTE-------------EECBCTTS
T ss_pred CCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCe-------------EEEEeCCC
Confidence 532211100 000 11122677888999999999 99999999
Q ss_pred CcEEEEEeC
Q 041325 442 CEIKIWQIR 450 (450)
Q Consensus 442 g~i~iw~l~ 450 (450)
|.|+||++.
T Consensus 405 ~~v~~w~~~ 413 (416)
T 2pm9_A 405 KGVSITNPK 413 (416)
T ss_dssp SCBCCBCCC
T ss_pred CeEEEEEec
Confidence 999999974
No 33
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=1.2e-39 Score=303.30 Aligned_cols=278 Identities=28% Similarity=0.530 Sum_probs=242.9
Q ss_pred eeeeEEeecCCCcc-eEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEE
Q 041325 64 QCSATLKVKGNSSY-IPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFS 142 (450)
Q Consensus 64 ~~~~~l~~~~h~~~-v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s 142 (450)
+..+.+. +|.+. ++|+.+++++|++|+.||.|++||+.+++.... +.+|.+.|.+++|+++.+++
T Consensus 109 ~~~~~l~--~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~------------~~~h~~~v~~~~~~~~~l~s 174 (445)
T 2ovr_B 109 KSPKVLK--GHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRT------------LVGHTGGVWSSQMRDNIIIS 174 (445)
T ss_dssp CCCEEEE--CSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEE------------CCCCSSCEEEEEEETTEEEE
T ss_pred ceeEEec--ccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEE------------EcCCCCCEEEEEecCCEEEE
Confidence 3456677 99986 588888999999999999999999998886665 66899999999999999999
Q ss_pred EeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCC
Q 041325 143 AHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDG 222 (450)
Q Consensus 143 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 222 (450)
|+.||+|++||+++++ .+ ..+.+|...|.+++++ +
T Consensus 175 ~~~dg~i~vwd~~~~~----------------~~---------------------------~~~~~h~~~v~~~~~~--~ 209 (445)
T 2ovr_B 175 GSTDRTLKVWNAETGE----------------CI---------------------------HTLYGHTSTVRCMHLH--E 209 (445)
T ss_dssp EETTSCEEEEETTTTE----------------EE---------------------------EEECCCSSCEEEEEEE--T
T ss_pred EeCCCeEEEEECCcCc----------------EE---------------------------EEECCCCCcEEEEEec--C
Confidence 9999999999999872 22 2233688899999996 5
Q ss_pred CEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhh
Q 041325 223 SLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEK 302 (450)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 302 (450)
+.+++|+.||.|++||+.+++.+..+. .|...|.++.+. +.++++++.||.|++||+++++ .+..+.+
T Consensus 210 ~~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~~---~~~l~~~~~dg~i~iwd~~~~~--------~~~~~~~ 277 (445)
T 2ovr_B 210 KRVVSGSRDATLRVWDIETGQCLHVLM-GHVAAVRCVQYD---GRRVVSGAYDFMVKVWDPETET--------CLHTLQG 277 (445)
T ss_dssp TEEEEEETTSEEEEEESSSCCEEEEEE-CCSSCEEEEEEC---SSCEEEEETTSCEEEEEGGGTE--------EEEEECC
T ss_pred CEEEEEeCCCEEEEEECCCCcEEEEEc-CCcccEEEEEEC---CCEEEEEcCCCEEEEEECCCCc--------EeEEecC
Confidence 789999999999999999999998888 899999999993 4589999999999999997765 5666778
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEE
Q 041325 303 HKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIR 382 (450)
Q Consensus 303 ~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~ 382 (450)
|...|.+++| +++++++|+.||.|++||+++++.+ ..+.+|...+.++.++++++++|+.||.|+
T Consensus 278 ~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~-------------~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~ 342 (445)
T 2ovr_B 278 HTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCI-------------HTLTGHQSLTSGMELKDNILVSGNADSTVK 342 (445)
T ss_dssp CSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEE-------------EEECCCCSCEEEEEEETTEEEEEETTSCEE
T ss_pred CCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEE-------------EEEcCCcccEEEEEEeCCEEEEEeCCCeEE
Confidence 9999999999 7899999999999999999988755 566789999999999999999999999999
Q ss_pred EeeCCCCccccCCCceeEEEecC---CCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 383 IWRRSSSVTDHQKGYSCLAVLEG---HRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 383 iwd~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+||++++ +++..+.+ |...|.+++|+ +. +|++|+.||.|++||++
T Consensus 343 vwd~~~~--------~~~~~~~~~~~~~~~v~~~~~~--~~-------------~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 343 IWDIKTG--------QCLQTLQGPNKHQSAVTCLQFN--KN-------------FVITSSDDGTVKLWDLK 390 (445)
T ss_dssp EEETTTC--------CEEEEECSTTSCSSCEEEEEEC--SS-------------EEEEEETTSEEEEEETT
T ss_pred EEECCCC--------cEEEEEccCCCCCCCEEEEEEC--CC-------------EEEEEeCCCeEEEEECC
Confidence 9999874 56667765 88999999995 45 89999999999999974
No 34
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8e-41 Score=310.75 Aligned_cols=323 Identities=15% Similarity=0.232 Sum_probs=237.9
Q ss_pred CCccceeeeEE-eecCCCcceEEEEE---eCCEEEEeeCCCcEEEecCCC---CCceeeeecCCCCcceeEEecCCCceE
Q 041325 59 AASEHQCSATL-KVKGNSSYIPSLAI---AGKLLYGGSSNGEIRAWNRDP---NNYVNITSTDVGDHANVVATGNGDAVK 131 (450)
Q Consensus 59 ~~~~~~~~~~l-~~~~h~~~v~~~~~---d~~~l~tgs~dg~v~vw~~~~---~~~~~~~~~~~~~~~~~~~~~h~~~v~ 131 (450)
+.+.++++.++ + +|.+.|++++| ++++|++|+.||.|+|||+.+ +..... ....+|...|.
T Consensus 48 w~~~g~~~~~~~~--~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~----------~~~~~h~~~v~ 115 (437)
T 3gre_A 48 GNLRGKLIATLME--NEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSS----------SLTYDCSSTVT 115 (437)
T ss_dssp GGCCCCEEEEECT--TTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSC----------SEEEECSSCEE
T ss_pred ccccceEEeeecc--CCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccce----------eeeccCCCCEE
Confidence 44667888888 6 99999999999 478999999999999999876 321110 11236999999
Q ss_pred EEEEeCCe--EEEEeCCCeEEEEEcC---CCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeee
Q 041325 132 SLVVLGDK--LFSAHQDHKIRVWKID---NNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTW 206 (450)
Q Consensus 132 ~l~~~~~~--l~s~~~dg~i~iw~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (450)
+++|+++. |++++.||+|++||++ .+........ ..+. ...+
T Consensus 116 ~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~--------~~i~-------------------------~~~~ 162 (437)
T 3gre_A 116 QITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNC--------ECIR-------------------------KINL 162 (437)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEE--------EEEE-------------------------EEEG
T ss_pred EEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeecccc--------ceeE-------------------------EEEc
Confidence 99999865 9999999999999995 3321110000 0000 0011
Q ss_pred ec--CCCceEEEE--EccCCCEEEEEeCCCcEEEEecCCCeEEEEeecc-cccceEEEEEeecCCcEEEEEcCCCcEEEE
Q 041325 207 VH--HVDTVSALA--LSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNA-HDDAINAIVVSKSNDGFVYTGSADTKIKVW 281 (450)
Q Consensus 207 ~~--~~~~v~~~~--~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw 281 (450)
.. +...+.++. +++++.++++++.|+.|++||+++++.+..+... |...|.+++|+|+ ..+|++|+.||.|++|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~-~~~l~s~~~dg~i~iw 241 (437)
T 3gre_A 163 KNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEE-CCVLILGTTRGIIDIW 241 (437)
T ss_dssp GGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTT-SCEEEEEETTSCEEEE
T ss_pred cCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCC-CCEEEEEcCCCeEEEE
Confidence 11 566788888 5689999999999999999999999999998832 8899999999985 5589999999999999
Q ss_pred eCcchhhhccccchhhhhHh-hcccceEEEEEcC----CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCcee------
Q 041325 282 KKLRAALQVNKKHSLVQTLE-KHKSAVTALALST----DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMV------ 350 (450)
Q Consensus 282 d~~~~~~~~~~~~~~~~~~~-~~~~~i~~l~~~~----~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~------ 350 (450)
|+++++ .+..+. .|...|.+++|+| ++++|++|+.||.|++||+++++.+..+........
T Consensus 242 d~~~~~--------~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 313 (437)
T 3gre_A 242 DIRFNV--------LIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLP 313 (437)
T ss_dssp ETTTTE--------EEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSC
T ss_pred EcCCcc--------EEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecc
Confidence 998765 444443 5777899996654 678999999999999999999887654443221111
Q ss_pred -----eeccccC--CccceEEEEEeCC-eEEEEeCCCeEEEeeCCCCccccCC---------------------------
Q 041325 351 -----LKGALRG--HTKAILCLAVVSN-LLFSGSSDNTIRIWRRSSSVTDHQK--------------------------- 395 (450)
Q Consensus 351 -----~~~~~~~--~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~--------------------------- 395 (450)
....+.+ |...|++++|++. +|++|+.||.|++||+.++.....-
T Consensus 314 ~~~~l~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (437)
T 3gre_A 314 IEKGLEELNFCGIRSLNALSTISVSNDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMK 393 (437)
T ss_dssp BCSSGGGCCCCCCCSGGGGCCEEEETTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC
T ss_pred cccccccceecccccCCceEEEEECCceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecc
Confidence 0012233 8889999999954 8999999999999999875321000
Q ss_pred --CceeEEEecCCCcceEEEEEEec--CCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 396 --GYSCLAVLEGHRRPVKCLTAVVD--SDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 396 --~~~~~~~~~~h~~~v~~l~~~~~--~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
..........|...|++++|+++ +. +|++|+.||.|+||+
T Consensus 394 ~~~~~~~~~~~~h~~~I~~i~~~~~~~~~-------------~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 394 RTSTHSVDDSLYHHDIINSISTCEVDETP-------------LLVACDNSGLIGIFQ 437 (437)
T ss_dssp -------------CCCEEEEEEEESSSSE-------------EEEEEETTSCEEEEC
T ss_pred cccccccCcccccccceeeEeeeccCCce-------------EEEEEcCCceEEEeC
Confidence 00001112338999999999998 55 999999999999995
No 35
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=2.5e-40 Score=306.84 Aligned_cols=279 Identities=24% Similarity=0.468 Sum_probs=237.1
Q ss_pred CCCcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEE
Q 041325 73 GNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVW 152 (450)
Q Consensus 73 ~h~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw 152 (450)
+|...|.|+++++++|++|+.||.|++||+.+++.... +.+|.+.|.+++|.++.|++|+.||+|++|
T Consensus 131 ~~~~~v~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~------------~~~h~~~v~~l~~~~~~l~sg~~dg~i~vw 198 (435)
T 1p22_A 131 ETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRI------------LTGHTGSVLCLQYDERVIITGSSDSTVRVW 198 (435)
T ss_dssp SSCCCEEEEECCSSEEEEEESSSCEEEEESSSCCEEEE------------ECCCSSCEEEEECCSSEEEEEETTSCEEEE
T ss_pred CCCCcEEEEEECCCEEEEEeCCCeEEEEeCCCCeEEEE------------EcCCCCcEEEEEECCCEEEEEcCCCeEEEE
Confidence 67788999999999999999999999999998886665 678999999999988789999999999999
Q ss_pred EcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCC
Q 041325 153 KIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDR 232 (450)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 232 (450)
|+.+++. + ..+.+|...|.+++|+ +.++++|+.||
T Consensus 199 d~~~~~~----------------~---------------------------~~~~~h~~~v~~l~~~--~~~l~s~s~dg 233 (435)
T 1p22_A 199 DVNTGEM----------------L---------------------------NTLIHHCEAVLHLRFN--NGMMVTCSKDR 233 (435)
T ss_dssp ESSSCCE----------------E---------------------------EEECCCCSCEEEEECC--TTEEEEEETTS
T ss_pred ECCCCcE----------------E---------------------------EEEcCCCCcEEEEEEc--CCEEEEeeCCC
Confidence 9998732 1 2233688899999997 45899999999
Q ss_pred cEEEEecCCCeEE---EEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEE
Q 041325 233 TFKIWRTSDFRCL---ESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTA 309 (450)
Q Consensus 233 ~i~iwd~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 309 (450)
.|++||+.+++.. ..+. .|...|.++.+. +.++++|+.||.|++||+++++ .+..+.+|...|.+
T Consensus 234 ~i~vwd~~~~~~~~~~~~~~-~~~~~v~~~~~~---~~~l~s~~~dg~i~vwd~~~~~--------~~~~~~~~~~~v~~ 301 (435)
T 1p22_A 234 SIAVWDMASPTDITLRRVLV-GHRAAVNVVDFD---DKYIVSASGDRTIKVWNTSTCE--------FVRTLNGHKRGIAC 301 (435)
T ss_dssp CEEEEECSSSSCCEEEEEEC-CCSSCEEEEEEE---TTEEEEEETTSEEEEEETTTCC--------EEEEEECCSSCEEE
T ss_pred cEEEEeCCCCCCceeeeEec-CCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCcCc--------EEEEEcCCCCcEEE
Confidence 9999999987654 3444 789999999994 4589999999999999997766 56677789999999
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCCC
Q 041325 310 LALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 310 l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~ 389 (450)
+++ +++++++|+.||.|++||+++++.+ ..+.+|...|.++++++++|++|+.||.|++||+.++
T Consensus 302 ~~~--~~~~l~~g~~dg~i~iwd~~~~~~~-------------~~~~~h~~~v~~~~~~~~~l~sg~~dg~i~vwd~~~~ 366 (435)
T 1p22_A 302 LQY--RDRLVVSGSSDNTIRLWDIECGACL-------------RVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAA 366 (435)
T ss_dssp EEE--ETTEEEEEETTSCEEEEETTTCCEE-------------EEECCCSSCEEEEECCSSEEEEEETTSCEEEEEHHHH
T ss_pred EEe--CCCEEEEEeCCCeEEEEECCCCCEE-------------EEEeCCcCcEEEEEecCCEEEEEeCCCcEEEEECCCC
Confidence 999 4789999999999999999988755 5677899999999999999999999999999999764
Q ss_pred cccc-CCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 390 VTDH-QKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 390 ~~~~-~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
.... .....++..+.+|...|.+++| ++. +|++|+.||.|++||+.
T Consensus 367 ~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~-------------~l~s~s~Dg~i~iwd~~ 413 (435)
T 1p22_A 367 LDPRAPAGTLCLRTLVEHSGRVFRLQF--DEF-------------QIVSSSHDDTILIWDFL 413 (435)
T ss_dssp TSTTSCTTTTEEEEECCCSSCCCCEEE--CSS-------------CEEECCSSSEEEEEC--
T ss_pred CCccccccchheeeccCCCCCeEEEEe--CCC-------------EEEEEeCCCEEEEEECC
Confidence 2111 1112278888999999999999 666 89999999999999974
No 36
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=4.3e-40 Score=299.20 Aligned_cols=297 Identities=14% Similarity=0.167 Sum_probs=234.3
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCC--ceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCC
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNN--YVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQD 146 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~--~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d 146 (450)
.|..+|++++| ++++|++|+.||.|++||+.+++ .... +.+|...|.+++|+++. |++++.|
T Consensus 6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~------------~~~h~~~v~~~~~~~~~~~l~~~~~d 73 (372)
T 1k8k_C 6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHE------------LKEHNGQVTGVDWAPDSNRIVTCGTD 73 (372)
T ss_dssp SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEE------------EECCSSCEEEEEEETTTTEEEEEETT
T ss_pred ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeee------------ecCCCCcccEEEEeCCCCEEEEEcCC
Confidence 79999999999 79999999999999999998875 3333 67899999999999766 9999999
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLY 226 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 226 (450)
|.|++||+++++.. ....+..|...|.+++|+|++++|+
T Consensus 74 g~i~vwd~~~~~~~-----------------------------------------~~~~~~~~~~~v~~~~~~~~~~~l~ 112 (372)
T 1k8k_C 74 RNAYVWTLKGRTWK-----------------------------------------PTLVILRINRAARCVRWAPNEKKFA 112 (372)
T ss_dssp SCEEEEEEETTEEE-----------------------------------------EEEECCCCSSCEEEEEECTTSSEEE
T ss_pred CeEEEEECCCCeee-----------------------------------------eeEEeecCCCceeEEEECCCCCEEE
Confidence 99999999877321 0111235888999999999999999
Q ss_pred EEeCCCcEEEEecCCCe---EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc----------ccc
Q 041325 227 STSWDRTFKIWRTSDFR---CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV----------NKK 293 (450)
Q Consensus 227 ~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~----------~~~ 293 (450)
+++.|+.|++||+..++ ....+...|...|.+++|+|+ ..++++++.||.|++||++...... ...
T Consensus 113 ~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~ 191 (372)
T 1k8k_C 113 VGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPN-SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPF 191 (372)
T ss_dssp EEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTT-SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCT
T ss_pred EEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCC-CCEEEEEcCCCCEEEEEcccccccccccccccccccch
Confidence 99999999999998876 344444478899999999984 4589999999999999975322110 011
Q ss_pred chhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--e
Q 041325 294 HSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--L 371 (450)
Q Consensus 294 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~ 371 (450)
...+..+..|...|.+++|+|++++|++++.||.|++||+++++.+ ..+..|...|.+++|+++ +
T Consensus 192 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-------------~~~~~~~~~v~~~~~~~~~~~ 258 (372)
T 1k8k_C 192 GELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV-------------ATLASETLPLLAVTFITESSL 258 (372)
T ss_dssp TCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE-------------EEEECSSCCEEEEEEEETTEE
T ss_pred hhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCcee-------------EEEccCCCCeEEEEEecCCCE
Confidence 2245556678899999999999999999999999999999988755 456678889999999854 5
Q ss_pred EEEEeCCCeEEEeeCCC--Ccccc------------------------CCCceeE------EEe-cCCCcceEEEEEEec
Q 041325 372 LFSGSSDNTIRIWRRSS--SVTDH------------------------QKGYSCL------AVL-EGHRRPVKCLTAVVD 418 (450)
Q Consensus 372 l~s~~~dg~v~iwd~~~--~~~~~------------------------~~~~~~~------~~~-~~h~~~v~~l~~~~~ 418 (450)
+++| .|+.|++|++.. +.... ....... ..+ .+|..+|++++|.+.
T Consensus 259 l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 337 (372)
T 1k8k_C 259 VAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSG 337 (372)
T ss_dssp EEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEES
T ss_pred EEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecC
Confidence 6555 999999999986 31000 0000111 223 489999999997754
Q ss_pred -C---CCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 419 -S---DYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 419 -~---~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+ . +|+||+.||.|++|+++
T Consensus 338 ~g~~~~-------------~l~s~~~Dg~i~~W~~~ 360 (372)
T 1k8k_C 338 GKAKCS-------------QFCTTGMDGGMSIWDVR 360 (372)
T ss_dssp TTTSCS-------------EEEEEETTSEEEEEEHH
T ss_pred CCccee-------------eEEEecCCCceEEEEec
Confidence 4 6 99999999999999973
No 37
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=6.8e-41 Score=310.43 Aligned_cols=307 Identities=15% Similarity=0.163 Sum_probs=225.4
Q ss_pred cceeeeEEeecCCCcceEEEEE---eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC
Q 041325 62 EHQCSATLKVKGNSSYIPSLAI---AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD 138 (450)
Q Consensus 62 ~~~~~~~l~~~~h~~~v~~~~~---d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 138 (450)
.....+... +|...|+||+| ++++||+|+.||.|+|||+.+++.... ..+.+|.+.|++|+|+|.
T Consensus 108 ~~~~~~~~~--~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~----------~~~~gH~~~V~~l~f~p~ 175 (435)
T 4e54_B 108 SYRILQKAA--PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTF----------IKGIGAGGSITGLKFNPL 175 (435)
T ss_dssp TTTSCCEEE--ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEE----------ECCCSSSCCCCEEEECSS
T ss_pred ceeecccCC--CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeE----------EEccCCCCCEEEEEEeCC
Confidence 445566677 89999999999 478999999999999999987764333 124589999999999863
Q ss_pred ---eEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEE
Q 041325 139 ---KLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSA 215 (450)
Q Consensus 139 ---~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 215 (450)
.|++|+.||+|++||++......... ...+...+.+
T Consensus 176 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~-----------------------------------------~~~~~~~~~~ 214 (435)
T 4e54_B 176 NTNQFYASSMEGTTRLQDFKGNILRVFAS-----------------------------------------SDTINIWFCS 214 (435)
T ss_dssp CTTEEEEECSSSCEEEEETTSCEEEEEEC-----------------------------------------CSSCSCCCCC
T ss_pred CCCEEEEEeCCCEEEEeeccCCceeEEec-----------------------------------------cCCCCccEEE
Confidence 39999999999999998763211000 0124446789
Q ss_pred EEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccch
Q 041325 216 LALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHS 295 (450)
Q Consensus 216 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 295 (450)
++|+|++++|++|+.||.|++||++. +.+..+. .|...|.+++|+|.++.++++++.|+.|++||+++.+.. .
T Consensus 215 ~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~-~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~-----~ 287 (435)
T 4e54_B 215 LDVSASSRMVVTGDNVGNVILLNMDG-KELWNLR-MHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGK-----A 287 (435)
T ss_dssp EEEETTTTEEEEECSSSBEEEEESSS-CBCCCSB-CCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSS-----S
T ss_pred EEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEe-cccceEEeeeecCCCceEEEEecCcceeeEEeccccccc-----c
Confidence 99999999999999999999999964 5566666 799999999999977778999999999999999775411 1
Q ss_pred hhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCce----eeeccccCCccceEEEEEe--C
Q 041325 296 LVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHM----VLKGALRGHTKAILCLAVV--S 369 (450)
Q Consensus 296 ~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~--~ 369 (450)
......+|...|++++|+|+|++|++|+.||.|++||+.+++............ ............+..+.+. +
T Consensus 288 ~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 367 (435)
T 4e54_B 288 SFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDP 367 (435)
T ss_dssp CCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCT
T ss_pred eEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCC
Confidence 222335688999999999999999999999999999999887653322111100 0000000011122222222 2
Q ss_pred C-eEEEEeCCCeEEEeeCCCCccccCCCceeEEEe-cCCCcceEEE-EEEecCCCCCCCCCCCCceEEEEEcccCCcEEE
Q 041325 370 N-LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVL-EGHRRPVKCL-TAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKI 446 (450)
Q Consensus 370 ~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~-~~h~~~v~~l-~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~i 446 (450)
. .++++..++.|++||..++ +.+..+ .+|...|.++ +|+|++. +|++|+ |+.|+|
T Consensus 368 ~~~~~~~~~~~~i~iwd~~~g--------~~~~~l~~~~~~~v~s~~~fspdg~-------------~lasg~-d~~i~i 425 (435)
T 4e54_B 368 NFKSCTPYELRTIDVFDGNSG--------KMMCQLYDPESSGISSLNEFNPMGD-------------TLASAM-GYHILI 425 (435)
T ss_dssp TSCCSSTTCCCCEEEECSSSC--------CEEEEECCSSCCCCCCEEEECTTSS-------------CEEEEC-SSEEEE
T ss_pred CeEEEEecCCCEEEEEECCCC--------cEEEEEeCCCCCcEEEEEEECCCCC-------------EEEEEc-CCcEEE
Confidence 2 2333334568999999875 445544 5788889988 6999999 888876 889999
Q ss_pred EEeC
Q 041325 447 WQIR 450 (450)
Q Consensus 447 w~l~ 450 (450)
|+++
T Consensus 426 W~~~ 429 (435)
T 4e54_B 426 WSQQ 429 (435)
T ss_dssp CCCC
T ss_pred EECC
Confidence 9975
No 38
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=6e-40 Score=290.89 Aligned_cols=242 Identities=20% Similarity=0.293 Sum_probs=213.8
Q ss_pred eeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EE
Q 041325 66 SATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LF 141 (450)
Q Consensus 66 ~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~ 141 (450)
...+. +|...|.++++ ++.++++|+.||+|++||+.+++.... +..|...+.+++|+|+. |+
T Consensus 73 ~~~l~--gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~------------~~~~~~~~~~~~~spdg~~l~ 138 (321)
T 3ow8_A 73 QWSLE--GHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKS------------IDAGPVDAWTLAFSPDSQYLA 138 (321)
T ss_dssp EEEEC--CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE------------EECCTTCCCCEEECTTSSEEE
T ss_pred eeeec--cCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEE------------EeCCCccEEEEEECCCCCEEE
Confidence 34455 99999999999 789999999999999999998876655 56788899999999887 99
Q ss_pred EEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC
Q 041325 142 SAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD 221 (450)
Q Consensus 142 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 221 (450)
+++.||.|++|+++++.. ...+..|...|.+++|+|+
T Consensus 139 ~g~~dg~v~i~~~~~~~~-------------------------------------------~~~~~~~~~~v~~~~~spd 175 (321)
T 3ow8_A 139 TGTHVGKVNIFGVESGKK-------------------------------------------EYSLDTRGKFILSIAYSPD 175 (321)
T ss_dssp EECTTSEEEEEETTTCSE-------------------------------------------EEEEECSSSCEEEEEECTT
T ss_pred EEcCCCcEEEEEcCCCce-------------------------------------------eEEecCCCceEEEEEECCC
Confidence 999999999999988732 1223357778999999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHh
Q 041325 222 GSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLE 301 (450)
Q Consensus 222 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 301 (450)
+++|++|+.||.|++||+++++.+..+. .|...|.+++|+|+ ..+|++++.||.|++||++.++ ....+.
T Consensus 176 g~~lasg~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~spd-~~~l~s~s~dg~i~iwd~~~~~--------~~~~~~ 245 (321)
T 3ow8_A 176 GKYLASGAIDGIINIFDIATGKLLHTLE-GHAMPIRSLTFSPD-SQLLVTASDDGYIKIYDVQHAN--------LAGTLS 245 (321)
T ss_dssp SSEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCCCEEEECTT-SCEEEEECTTSCEEEEETTTCC--------EEEEEC
T ss_pred CCEEEEEcCCCeEEEEECCCCcEEEEEc-ccCCceeEEEEcCC-CCEEEEEcCCCeEEEEECCCcc--------eeEEEc
Confidence 9999999999999999999999999887 89999999999984 4489999999999999997665 556677
Q ss_pred hcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCC
Q 041325 302 KHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDN 379 (450)
Q Consensus 302 ~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg 379 (450)
+|...|.+++|+|++++|++|+.|+.|++||+.+++++ ..+.+|...|.+++|++ ++|++++.||
T Consensus 246 ~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~-------------~~~~~h~~~v~~v~~s~~g~~l~s~~~d~ 312 (321)
T 3ow8_A 246 GHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCV-------------HTFFDHQDQVWGVKYNGNGSKIVSVGDDQ 312 (321)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-------------EEECCCSSCEEEEEECTTSSEEEEEETTC
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEE-------------EEEcCCCCcEEEEEECCCCCEEEEEeCCC
Confidence 89999999999999999999999999999999988755 56778999999999985 4999999999
Q ss_pred eEEEeeCC
Q 041325 380 TIRIWRRS 387 (450)
Q Consensus 380 ~v~iwd~~ 387 (450)
.|++||..
T Consensus 313 ~i~vwd~p 320 (321)
T 3ow8_A 313 EIHIYDCP 320 (321)
T ss_dssp CEEEEECC
T ss_pred eEEEEeCC
Confidence 99999963
No 39
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=5.9e-40 Score=293.88 Aligned_cols=277 Identities=21% Similarity=0.335 Sum_probs=226.6
Q ss_pred ccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEE
Q 041325 13 RNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYG 90 (450)
Q Consensus 13 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~t 90 (450)
.+..+.|+|++..+.+.+.+..+. ++...+++.+..+. .|...|.+++| ++++|++
T Consensus 57 ~v~~~~~s~d~~~l~s~s~Dg~v~--------------------iWd~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~s 114 (340)
T 1got_B 57 KIYAMHWGTDSRLLLSASQDGKLI--------------------IWDSYTTNKVHAIP--LRSSWVMTCAYAPSGNYVAC 114 (340)
T ss_dssp CEEEEEECTTSSEEEEEETTTEEE--------------------EEETTTCCEEEEEE--CSSSCEEEEEECTTSSEEEE
T ss_pred ceEEEEECCCCCEEEEEeCCCcEE--------------------EEECCCCCcceEee--cCCccEEEEEECCCCCEEEE
Confidence 455566666666666655554443 33444556778888 99999999999 7999999
Q ss_pred eeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEEEcCCCceeEEeccCccc
Q 041325 91 GSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVWKIDNNTSAYYSTSGKLK 169 (450)
Q Consensus 91 gs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 169 (450)
|+.||.|++|++.+...... ....+.+|.+.|.++.|+++. +++++.|++|++||++++.
T Consensus 115 ~~~d~~v~iw~~~~~~~~~~--------~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~----------- 175 (340)
T 1got_B 115 GGLDNICSIYNLKTREGNVR--------VSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQ----------- 175 (340)
T ss_dssp EETTCEEEEEETTTCSBSCE--------EEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTE-----------
T ss_pred EeCCCeEEEEECccCCCcce--------eEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCc-----------
Confidence 99999999999987542111 112367999999999998666 9999999999999999872
Q ss_pred ccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEee
Q 041325 170 NKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVK 249 (450)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 249 (450)
.+ ..+.+|.+.|.+++|+|+++++++|+.|+.|++||+++++++..+.
T Consensus 176 -----~~---------------------------~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~ 223 (340)
T 1got_B 176 -----QT---------------------------TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT 223 (340)
T ss_dssp -----EE---------------------------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC
T ss_pred -----EE---------------------------EEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEc
Confidence 22 2334689999999999999999999999999999999999998887
Q ss_pred cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhH--hhcccceEEEEEcCCCCEEEEeeCCCc
Q 041325 250 NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTL--EKHKSAVTALALSTDGTVLYSGACDRS 327 (450)
Q Consensus 250 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~i~~l~~~~~~~~l~~g~~dg~ 327 (450)
.|...|.+++|+|+ ..+|++|+.||.|++||++.++ .+..+ ..+...|++++|+|++++|++|+.||.
T Consensus 224 -~h~~~v~~v~~~p~-~~~l~s~s~d~~v~iwd~~~~~--------~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~ 293 (340)
T 1got_B 224 -GHESDINAICFFPN-GNAFATGSDDATCRLFDLRADQ--------ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN 293 (340)
T ss_dssp -CCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTE--------EEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE
T ss_pred -CCcCCEEEEEEcCC-CCEEEEEcCCCcEEEEECCCCc--------EEEEEccCCcccceEEEEECCCCCEEEEECCCCe
Confidence 89999999999995 4589999999999999997755 22222 223457999999999999999999999
Q ss_pred EEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEee
Q 041325 328 ILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWR 385 (450)
Q Consensus 328 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd 385 (450)
|++||+.+++.+ ..+.+|...|.+++|+++ +|++|+.||.|++||
T Consensus 294 i~vwd~~~~~~~-------------~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 294 CNVWDALKADRA-------------GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEEEETTTCCEE-------------EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEEEcccCcEe-------------eEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 999999987654 567889999999999854 999999999999997
No 40
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=8.6e-40 Score=295.48 Aligned_cols=298 Identities=12% Similarity=0.196 Sum_probs=234.1
Q ss_pred eeEEeecCCCcceEEEEE--eCC-EEEEeeC---CCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC-
Q 041325 66 SATLKVKGNSSYIPSLAI--AGK-LLYGGSS---NGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD- 138 (450)
Q Consensus 66 ~~~l~~~~h~~~v~~~~~--d~~-~l~tgs~---dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~- 138 (450)
.+.++ +|...|++++| ++. ++++|+. ||.|++||+.+++.... ...+|...|.+++|+++
T Consensus 11 ~~~~~--~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~-----------~~~~~~~~v~~~~~~~~~ 77 (357)
T 3i2n_A 11 AHIQK--GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL-----------REIEKAKPIKCGTFGATS 77 (357)
T ss_dssp EEEEE--ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE-----------EEEEESSCEEEEECTTCC
T ss_pred hhhcc--CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce-----------eeecccCcEEEEEEcCCC
Confidence 34445 89999999999 564 5556766 99999999998775443 23478899999999986
Q ss_pred ---e-EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceE
Q 041325 139 ---K-LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVS 214 (450)
Q Consensus 139 ---~-l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 214 (450)
. |++++.||.|++||+.++. .....+.+|...|.
T Consensus 78 ~~~~~l~~~~~dg~i~iwd~~~~~------------------------------------------~~~~~~~~~~~~v~ 115 (357)
T 3i2n_A 78 LQQRYLATGDFGGNLHIWNLEAPE------------------------------------------MPVYSVKGHKEIIN 115 (357)
T ss_dssp TTTCCEEEEETTSCEEEECTTSCS------------------------------------------SCSEEECCCSSCEE
T ss_pred CCCceEEEecCCCeEEEEeCCCCC------------------------------------------ccEEEEEecccceE
Confidence 3 9999999999999998772 01223446889999
Q ss_pred EEE------EccCCCEEEEEeCCCcEEEEecCCCe-EEEEeecccc----cceEEEE----EeecCCcEEEEEcCCCcEE
Q 041325 215 ALA------LSSDGSLLYSTSWDRTFKIWRTSDFR-CLESVKNAHD----DAINAIV----VSKSNDGFVYTGSADTKIK 279 (450)
Q Consensus 215 ~~~------~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~----~~v~~~~----~~~~~~~~l~~~~~dg~i~ 279 (450)
+++ |+|++++|++++.||.|++||+.+++ .+..+. .+. ..+.+++ |++ ...++++++.||.|+
T Consensus 116 ~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~-~~~~l~~~~~d~~i~ 193 (357)
T 3i2n_A 116 AIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANME-PVQGENKRDCWTVAFGNAYNQ-EERVVCAGYDNGDIK 193 (357)
T ss_dssp EEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEEC-CCTTSCCCCEEEEEEECCCC--CCCEEEEEETTSEEE
T ss_pred EEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceecc-ccCCCCCCceEEEEEEeccCC-CCCEEEEEccCCeEE
Confidence 995 46899999999999999999999886 566664 333 3888998 455 455899999999999
Q ss_pred EEeCcchhhhccccchhhhhHhhcccceEEEEEcC---CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeecccc
Q 041325 280 VWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST---DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALR 356 (450)
Q Consensus 280 vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~---~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 356 (450)
+||+++++ . .....|...|.+++|+| ++++|++|+.||.|++||+++++... ........
T Consensus 194 i~d~~~~~--------~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--------~~~~~~~~ 256 (357)
T 3i2n_A 194 LFDLRNMA--------L-RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTK--------GFASVSEK 256 (357)
T ss_dssp EEETTTTE--------E-EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTT--------EEEEEEEE
T ss_pred EEECccCc--------e-eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCccc--------ceeeeccC
Confidence 99998765 2 22345788999999999 99999999999999999998765321 01111344
Q ss_pred CCccceEEEEEeCC---eEEEEeCCCeEEEeeCCCCcccc-----------CCCceeEEEecCCCcceEEEEEEecCCCC
Q 041325 357 GHTKAILCLAVVSN---LLFSGSSDNTIRIWRRSSSVTDH-----------QKGYSCLAVLEGHRRPVKCLTAVVDSDYS 422 (450)
Q Consensus 357 ~~~~~v~~~~~~~~---~l~s~~~dg~v~iwd~~~~~~~~-----------~~~~~~~~~~~~h~~~v~~l~~~~~~~~~ 422 (450)
+|...|++++|+++ ++++++.||.|++||++.+.... ......+..+.+|...|++++|+|+++
T Consensus 257 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-- 334 (357)
T 3i2n_A 257 AHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKR-- 334 (357)
T ss_dssp CCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSST--
T ss_pred CCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCC--
Confidence 89999999999965 79999999999999998642211 011257888899999999999999999
Q ss_pred CCCCCCCCceEEEE-EcccCCcEEEEEeC
Q 041325 423 NRNSDHSSTSFLVY-SGSLDCEIKIWQIR 450 (450)
Q Consensus 423 ~~~~~~~~~~~~l~-s~~~Dg~i~iw~l~ 450 (450)
+|+ +++.||.|++||++
T Consensus 335 -----------~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 335 -----------GLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp -----------TEEEEEETTSEEEEEEEC
T ss_pred -----------eEEEEecCCCcEEEEECC
Confidence 676 89999999999984
No 41
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.3e-40 Score=295.70 Aligned_cols=288 Identities=16% Similarity=0.171 Sum_probs=219.6
Q ss_pred ccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCC----CCccceeeeEEeecCCCcceEEEEE-eCCE
Q 041325 13 RNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAP----AASEHQCSATLKVKGNSSYIPSLAI-AGKL 87 (450)
Q Consensus 13 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~h~~~v~~~~~-d~~~ 87 (450)
.+..+.|+|++..+++.+.... +.-. .....+ ..+......... +|...|++++| ....
T Consensus 44 ~V~~v~fSpDG~~las~s~d~~-~~wd-------------~~v~~~~~~~~~~~~~~~~~~~--~~~~~V~~~~~s~d~~ 107 (357)
T 4g56_B 44 QIGAVRYRRDGALLLAASSLSS-RTWG-------------GSIWVFKDPEGAPNESLCTAGV--QTEAGVTDVAWVSEKG 107 (357)
T ss_dssp EEEEEEECSSSCEEEEEECSSS-SSCC-------------EEEEEESSCC---CGGGCSEEE--ECSSCEEEEEEETTTE
T ss_pred CEEEEEECCCCCEEEEEcCCCC-cccc-------------CeEEEEECCCCCcceeEecccC--CCCCCEEEEEEcCCCC
Confidence 6788899999999988765432 1100 000000 111122333444 79999999999 3456
Q ss_pred EEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEecc
Q 041325 88 LYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTS 165 (450)
Q Consensus 88 l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~ 165 (450)
+++++.||+|+|||+.+++.... ......+|...|.+++|+|+. |++|+.||+|++||+++++
T Consensus 108 ~l~~s~dg~v~lWd~~~~~~~~~--------~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~------- 172 (357)
T 4g56_B 108 ILVASDSGAVELWEILEKESLLV--------NKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA------- 172 (357)
T ss_dssp EEEEETTSCEEEC--------CC--------CCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE-------
T ss_pred EEEEECCCEEEEeeccccceeEE--------EeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc-------
Confidence 77788999999999988764332 112355899999999999876 9999999999999999872
Q ss_pred CcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCC-EEEEEeCCCcEEEEecCCCeE
Q 041325 166 GKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGS-LLYSTSWDRTFKIWRTSDFRC 244 (450)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~ 244 (450)
.+ ..+.+|...|++++|++++. ++++++.||.|++||+++++.
T Consensus 173 ---------~~---------------------------~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~ 216 (357)
T 4g56_B 173 ---------VL---------------------------KSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP 216 (357)
T ss_dssp ---------EE---------------------------EEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC
T ss_pred ---------EE---------------------------EEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce
Confidence 22 23346899999999999874 789999999999999999887
Q ss_pred EEEee-cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCC-CEEEEe
Q 041325 245 LESVK-NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDG-TVLYSG 322 (450)
Q Consensus 245 ~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~-~~l~~g 322 (450)
...+. ..+...+.+++|+|+.+.+|++|+.|+.|++||+++++ .+..+.+|...|++++|+|++ ++|++|
T Consensus 217 ~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~--------~~~~~~~~~~~v~~l~~sp~~~~~lasg 288 (357)
T 4g56_B 217 ATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPD--------SAQTSAVHSQNITGLAYSYHSSPFLASI 288 (357)
T ss_dssp BCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGG--------GCEEECCCSSCEEEEEECSSSSCCEEEE
T ss_pred eeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCc--------EeEEEeccceeEEEEEEcCCCCCEEEEE
Confidence 76654 24667899999999777789999999999999998776 667778899999999999987 689999
Q ss_pred eCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC---CeEEEEeCCCeEEEeeCCCC
Q 041325 323 ACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS---NLLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 323 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~ 389 (450)
+.|+.|+|||+++++.+ ...+|...|++++|+| .+|++|+.||+|++|++.+.
T Consensus 289 s~D~~i~iwd~~~~~~~--------------~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 289 SEDCTVAVLDADFSEVF--------------RDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE 344 (357)
T ss_dssp ETTSCEEEECTTSCEEE--------------EECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred eCCCEEEEEECCCCcEe--------------EECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence 99999999999987654 2347999999999974 49999999999999999753
No 42
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-39 Score=301.12 Aligned_cols=299 Identities=12% Similarity=0.135 Sum_probs=236.3
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCe
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHK 148 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~ 148 (450)
+|...|++++| ++++|++|+.||.|++|| .+++.... +.+|...|.+++|+++. |++++.||.
T Consensus 106 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~------------~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 172 (425)
T 1r5m_A 106 KTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNV------------LNFHRAPIVSVKWNKDGTHIISMDVENV 172 (425)
T ss_dssp --CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEE------------ECCCCSCEEEEEECTTSSEEEEEETTCC
T ss_pred CCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeee------------ccCCCccEEEEEECCCCCEEEEEecCCe
Confidence 47889999999 799999999999999999 44444433 66899999999999776 999999999
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST 228 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 228 (450)
|++||+.++............... ............+.+++|++++ .++++
T Consensus 173 i~iwd~~~~~~~~~~~~~~~~~~~----------------------------~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 223 (425)
T 1r5m_A 173 TILWNVISGTVMQHFELKETGGSS----------------------------INAENHSGDGSLGVDVEWVDDD-KFVIP 223 (425)
T ss_dssp EEEEETTTTEEEEEECCC-------------------------------------------CCCBSCCEEEETT-EEEEE
T ss_pred EEEEECCCCcEEEEeeccccCccc----------------------------eeeccccCCcceeeEEEEcCCC-EEEEE
Confidence 999999887432211111000000 0000011223348899999875 58889
Q ss_pred eCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceE
Q 041325 229 SWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVT 308 (450)
Q Consensus 229 ~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 308 (450)
+.||.|++||+.+++.+..+. .|...|.+++|+|++ .+|++++.||.|++||+++++ ....+..|...|.
T Consensus 224 ~~~g~i~~~d~~~~~~~~~~~-~~~~~i~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~--------~~~~~~~~~~~i~ 293 (425)
T 1r5m_A 224 GPKGAIFVYQITEKTPTGKLI-GHHGPISVLEFNDTN-KLLLSASDDGTLRIWHGGNGN--------SQNCFYGHSQSIV 293 (425)
T ss_dssp CGGGCEEEEETTCSSCSEEEC-CCSSCEEEEEEETTT-TEEEEEETTSCEEEECSSSBS--------CSEEECCCSSCEE
T ss_pred cCCCeEEEEEcCCCceeeeec-cCCCceEEEEECCCC-CEEEEEcCCCEEEEEECCCCc--------cceEecCCCccEE
Confidence 999999999999998888887 789999999999854 489999999999999997765 5566677899999
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEEeeC
Q 041325 309 ALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRIWRR 386 (450)
Q Consensus 309 ~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~ 386 (450)
+++|+|++ ++++++.||.|++||+++++.+ ..+..|...|.+++|++ ++|++++.||.|++||+
T Consensus 294 ~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~-------------~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~ 359 (425)
T 1r5m_A 294 SASWVGDD-KVISCSMDGSVRLWSLKQNTLL-------------ALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDL 359 (425)
T ss_dssp EEEEETTT-EEEEEETTSEEEEEETTTTEEE-------------EEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEEC
T ss_pred EEEECCCC-EEEEEeCCCcEEEEECCCCcEe-------------EecccCCccEEEEEEcCCCCEEEEEECCCeEEEEEC
Confidence 99999999 9999999999999999987755 45667889999999984 59999999999999999
Q ss_pred CCCcccc------------CCCceeEEEecCCCc--ceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 387 SSSVTDH------------QKGYSCLAVLEGHRR--PVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 387 ~~~~~~~------------~~~~~~~~~~~~h~~--~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
.++.... ......+..+.+|.. .|++++|+|+++ +|++++.||.|++|+++
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-------------~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 360 KKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGN-------------KISVAYSLQEGSVVAIP 424 (425)
T ss_dssp HHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSS-------------EEEEEESSSCCEEEECC
T ss_pred CCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCc-------------eEEEEecCceEEEEeec
Confidence 8642000 001127788899976 999999999999 99999999999999985
No 43
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-39 Score=299.57 Aligned_cols=296 Identities=15% Similarity=0.215 Sum_probs=239.3
Q ss_pred eeeeEEeecCCCcceEEEEE--eCC-EEEEeeCCCcEEEecC----CCCCc------eeeeecCCCCcceeEEecCCCce
Q 041325 64 QCSATLKVKGNSSYIPSLAI--AGK-LLYGGSSNGEIRAWNR----DPNNY------VNITSTDVGDHANVVATGNGDAV 130 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d~~-~l~tgs~dg~v~vw~~----~~~~~------~~~~~~~~~~~~~~~~~~h~~~v 130 (450)
...+.+..+.|.+.|++++| +++ +||+|+.||.|++|++ .+++. ......... ......+|.+.|
T Consensus 34 ~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v 111 (425)
T 1r5m_A 34 GFVKILKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFA--LSASSGKTTNQV 111 (425)
T ss_dssp CCCEECEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCC--CC------CBCE
T ss_pred hhhhheeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccc--ccccccCCCCce
Confidence 45566665578899999999 688 9999999999999999 77772 222111110 011223478899
Q ss_pred EEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeec
Q 041325 131 KSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVH 208 (450)
Q Consensus 131 ~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (450)
.+++|+++. |++++.||.|++||.... ....+..
T Consensus 112 ~~~~~s~~~~~l~~~~~dg~i~i~~~~~~--------------------------------------------~~~~~~~ 147 (425)
T 1r5m_A 112 TCLAWSHDGNSIVTGVENGELRLWNKTGA--------------------------------------------LLNVLNF 147 (425)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTSC--------------------------------------------EEEEECC
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEeCCCC--------------------------------------------eeeeccC
Confidence 999999876 999999999999994322 1122336
Q ss_pred CCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccc---------------eEEEEEeecCCcEEEEEc
Q 041325 209 HVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDA---------------INAIVVSKSNDGFVYTGS 273 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---------------v~~~~~~~~~~~~l~~~~ 273 (450)
|...|.+++|+|++++|++++.|+.|++||+.+++.+..+. .+... +.++.|++ ++.+++++
T Consensus 148 ~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 224 (425)
T 1r5m_A 148 HRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFE-LKETGGSSINAENHSGDGSLGVDVEWVD--DDKFVIPG 224 (425)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEEC-CC---------------CCCBSCCEEEE--TTEEEEEC
T ss_pred CCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee-ccccCccceeeccccCCcceeeEEEEcC--CCEEEEEc
Confidence 88899999999999999999999999999999999888887 45555 89999996 35799999
Q ss_pred CCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeec
Q 041325 274 ADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKG 353 (450)
Q Consensus 274 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 353 (450)
.+|.|++||+++++ ....+..|...|.+++|+|++++|++++.||.|++||+++++.+ .
T Consensus 225 ~~g~i~~~d~~~~~--------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-------------~ 283 (425)
T 1r5m_A 225 PKGAIFVYQITEKT--------PTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQ-------------N 283 (425)
T ss_dssp GGGCEEEEETTCSS--------CSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCS-------------E
T ss_pred CCCeEEEEEcCCCc--------eeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccc-------------e
Confidence 99999999997765 55566678999999999999999999999999999999987644 4
Q ss_pred cccCCccceEEEEEeCC-eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCce
Q 041325 354 ALRGHTKAILCLAVVSN-LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTS 432 (450)
Q Consensus 354 ~~~~~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~ 432 (450)
.+..|...|.+++|+++ ++++++.||.|++||+.++ +.+..+..|...|.+++|+|++.
T Consensus 284 ~~~~~~~~i~~~~~~~~~~l~~~~~d~~i~i~d~~~~--------~~~~~~~~~~~~i~~~~~s~~~~------------ 343 (425)
T 1r5m_A 284 CFYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQN--------TLLALSIVDGVPIFAGRISQDGQ------------ 343 (425)
T ss_dssp EECCCSSCEEEEEEETTTEEEEEETTSEEEEEETTTT--------EEEEEEECTTCCEEEEEECTTSS------------
T ss_pred EecCCCccEEEEEECCCCEEEEEeCCCcEEEEECCCC--------cEeEecccCCccEEEEEEcCCCC------------
Confidence 56678999999999966 9999999999999999874 67888889999999999999999
Q ss_pred EEEEEcccCCcEEEEEeC
Q 041325 433 FLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 433 ~~l~s~~~Dg~i~iw~l~ 450 (450)
+|++++.||.|++||++
T Consensus 344 -~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 344 -KYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp -EEEEEETTSCEEEEECH
T ss_pred -EEEEEECCCeEEEEECC
Confidence 99999999999999973
No 44
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.7e-40 Score=302.35 Aligned_cols=304 Identities=12% Similarity=0.085 Sum_probs=221.6
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCC--CceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCC
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPN--NYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQD 146 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~--~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d 146 (450)
.|..+|++++| |+++|++|+.||.|++||+.++ +.... +.+|...|.+++|+++. |++++.|
T Consensus 9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~------------~~~h~~~v~~~~~s~~~~~l~s~s~d 76 (377)
T 3dwl_C 9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHART------------FSDHDKIVTCVDWAPKSNRIVTCSQD 76 (377)
T ss_dssp ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCC------------BCCCSSCEEEEEECTTTCCEEEEETT
T ss_pred cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEE------------EecCCceEEEEEEeCCCCEEEEEeCC
Confidence 56789999999 7999999999999999999876 33332 56899999999999875 9999999
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLY 226 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 226 (450)
|+|++||+.++.. ......+..|...|.+++|+|++++|+
T Consensus 77 ~~v~vwd~~~~~~----------------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~ 116 (377)
T 3dwl_C 77 RNAYVYEKRPDGT----------------------------------------WKQTLVLLRLNRAATFVRWSPNEDKFA 116 (377)
T ss_dssp SSEEEC------C----------------------------------------CCCEEECCCCSSCEEEEECCTTSSCCE
T ss_pred CeEEEEEcCCCCc----------------------------------------eeeeeEecccCCceEEEEECCCCCEEE
Confidence 9999999987620 001223346889999999999999999
Q ss_pred EEeCCCcEEEEecCCCeE---EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc----------cc
Q 041325 227 STSWDRTFKIWRTSDFRC---LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN----------KK 293 (450)
Q Consensus 227 ~~~~dg~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~----------~~ 293 (450)
+++.|+.|++||+++++. ...+...|...|.+++|+|+ ..+|++++.||.|++||++....... ..
T Consensus 117 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 195 (377)
T 3dwl_C 117 VGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPN-NVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPF 195 (377)
T ss_dssp EEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTT-SSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCE
T ss_pred EEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCC-CCEEEEEeCCCEEEEEEEEecccCCCccccccccccch
Confidence 999999999999998873 66666348999999999984 45899999999999999864321110 01
Q ss_pred chhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--e
Q 041325 294 HSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--L 371 (450)
Q Consensus 294 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~ 371 (450)
...+..+ .|...|.+++|+|++++|++++.||.|++||+.+++.. ......+.+|...|.+++|+++ +
T Consensus 196 ~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~---------~~~~~~~~~~~~~v~~~~~s~~~~~ 265 (377)
T 3dwl_C 196 NTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQP---------PRALITVKLSQLPLRSLLWANESAI 265 (377)
T ss_dssp EEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSC---------EEECCCEECSSSCEEEEEEEETTEE
T ss_pred hhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCc---------ceeeEeecCCCCceEEEEEcCCCCE
Confidence 2244455 78999999999999999999999999999999987641 1123667889999999999844 8
Q ss_pred EEEEeCCCeEEEeeCCCCcc------ccCC---------------C-c---------eeEE-------------EecCCC
Q 041325 372 LFSGSSDNTIRIWRRSSSVT------DHQK---------------G-Y---------SCLA-------------VLEGHR 407 (450)
Q Consensus 372 l~s~~~dg~v~iwd~~~~~~------~~~~---------------~-~---------~~~~-------------~~~~h~ 407 (450)
|++|+.++.+ +|+...... .... . . .... ....|.
T Consensus 266 l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~ 344 (377)
T 3dwl_C 266 VAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQ 344 (377)
T ss_dssp EEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCS
T ss_pred EEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCcccc
Confidence 8888766666 666542110 0000 0 0 0001 112399
Q ss_pred cceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 408 RPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 408 ~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
..|+++++.+... .+...|+|||.||.|++||+
T Consensus 345 ~~i~~~~~~~~~~---------~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 345 NMIATLRPYAGTP---------GNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp SCEEEEEEEEEET---------TEEEEEEEEETTSEEEEECC
T ss_pred ceeEEEeccCCCC---------CceEEEEeecCCCcEEEecC
Confidence 9999999887654 01225999999999999996
No 45
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=6.9e-39 Score=289.22 Aligned_cols=299 Identities=15% Similarity=0.151 Sum_probs=223.2
Q ss_pred CcceEEEEE--eCCEEEEeeCCC-------cEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEE--
Q 041325 75 SSYIPSLAI--AGKLLYGGSSNG-------EIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSA-- 143 (450)
Q Consensus 75 ~~~v~~~~~--d~~~l~tgs~dg-------~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~-- 143 (450)
.-+|+|++| |+++|++|+.|. .|++|++.......... ........+.+|...|.++++.++.+++|
T Consensus 14 g~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~--~~~~~~~~l~~~~~~v~s~~~~~~~~~~g~~ 91 (365)
T 4h5i_A 14 GYPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQ--FHILSEFALEDNDDSPTAIDASKGIILVGCN 91 (365)
T ss_dssp SSCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHH--EEEEEEEECCTTSCCCCEEEEETTEEEEECC
T ss_pred CCCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeee--eeeeeEEEccCCCCceEEEEeCCCEEEEEEC
Confidence 458999999 799999987543 59999987654321100 01112234678899999999998876665
Q ss_pred ---------eCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceE
Q 041325 144 ---------HQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVS 214 (450)
Q Consensus 144 ---------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 214 (450)
+.|+.+++|++....... ...... .......+...+.
T Consensus 92 ~~~~~l~s~~~d~~~r~~~~~~~~~~~------------~~~~~~----------------------~~~~~~~~~~~~~ 137 (365)
T 4h5i_A 92 ENSTKITQGKGNKHLRKFKYDKVNDQL------------EFLTSV----------------------DFDASTNADDYTK 137 (365)
T ss_dssp CCHHHHHHTSCCCCEEEEEEETTTTEE------------EEEEEE----------------------CSSCCCCTTCCEE
T ss_pred CCccEEEEecCCCcEEEEEecCCCceE------------EEeeee----------------------ceeecCCcccCEE
Confidence 457778888876653210 000000 0011123556789
Q ss_pred EEEEccCCCEEEEEe--CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccc
Q 041325 215 ALALSSDGSLLYSTS--WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNK 292 (450)
Q Consensus 215 ~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 292 (450)
+++|+|||+++++++ .|++|+|||+++++++..+. |...|.+++|+|++ .++++++.+ .+.+|+..+++.
T Consensus 138 ~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~--~~~~V~~v~fspdg-~~l~s~s~~-~~~~~~~~~~~~---- 209 (365)
T 4h5i_A 138 LVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE--TRGEVKDLHFSTDG-KVVAYITGS-SLEVISTVTGSC---- 209 (365)
T ss_dssp EEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE--CSSCCCEEEECTTS-SEEEEECSS-CEEEEETTTCCE----
T ss_pred EEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC--CCCceEEEEEccCC-ceEEeccce-eEEEEEeccCcc----
Confidence 999999999987554 78999999999999998886 77889999999854 478888755 566666655431
Q ss_pred cchhhhhHhhcccceEEEEEcCCCCEEEEeeCCC----cEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe
Q 041325 293 KHSLVQTLEKHKSAVTALALSTDGTVLYSGACDR----SILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV 368 (450)
Q Consensus 293 ~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 368 (450)
........|...|.+++|+|+++++++++.|+ .+++|++...... ......+.+|...|++++|+
T Consensus 210 --~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~---------~~~~~~~~~~~~~V~~~~~S 278 (365)
T 4h5i_A 210 --IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTS---------VLRSKQVTNRFKGITSMDVD 278 (365)
T ss_dssp --EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEE---------EEEEEEEESSCSCEEEEEEC
T ss_pred --eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceec---------ceeeeeecCCCCCeEeEEEC
Confidence 11223445788899999999999999999887 6888998765432 12335677899999999998
Q ss_pred CC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEE-ecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEE
Q 041325 369 SN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAV-LEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIK 445 (450)
Q Consensus 369 ~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~ 445 (450)
++ +||+|+.|+.|+|||++++ +++.. +.+|...|++|+|+||++ +|+|||.|++|+
T Consensus 279 pdg~~lasgs~D~~V~iwd~~~~--------~~~~~~~~gH~~~V~~v~fSpdg~-------------~laS~S~D~tvr 337 (365)
T 4h5i_A 279 MKGELAVLASNDNSIALVKLKDL--------SMSKIFKQAHSFAITEVTISPDST-------------YVASVSAANTIH 337 (365)
T ss_dssp TTSCEEEEEETTSCEEEEETTTT--------EEEEEETTSSSSCEEEEEECTTSC-------------EEEEEETTSEEE
T ss_pred CCCCceEEEcCCCEEEEEECCCC--------cEEEEecCcccCCEEEEEECCCCC-------------EEEEEeCCCeEE
Confidence 54 9999999999999999875 66766 579999999999999999 999999999999
Q ss_pred EEEe
Q 041325 446 IWQI 449 (450)
Q Consensus 446 iw~l 449 (450)
||||
T Consensus 338 vw~i 341 (365)
T 4h5i_A 338 IIKL 341 (365)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9998
No 46
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=4.1e-38 Score=305.54 Aligned_cols=329 Identities=17% Similarity=0.229 Sum_probs=248.3
Q ss_pred CCCCccceeeeEEeecCCCc---ceEEEEE--e-CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEE-e---cC
Q 041325 57 APAASEHQCSATLKVKGNSS---YIPSLAI--A-GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVA-T---GN 126 (450)
Q Consensus 57 ~~~~~~~~~~~~l~~~~h~~---~v~~~~~--d-~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~-~---~h 126 (450)
.+...+.+++..+. +|.. .|++++| + +++|++|+.||.|++||+.+++.... + . +|
T Consensus 187 vwd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~------------~~~~~~~~ 252 (615)
T 1pgu_A 187 FYQGPPFKFSASDR--THHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY------------IEDDQEPV 252 (615)
T ss_dssp EEETTTBEEEEEEC--SSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEE------------CCBTTBCC
T ss_pred EEeCCCcceeeeec--ccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEE------------eccccccc
Confidence 34455678888888 9999 9999999 6 89999999999999999998886665 3 3 78
Q ss_pred CCceEEEEEe-CCeEEEEeCCCeEEEEEcCCCceeEEeccCccc-ccceeeeeeccCCCcceeEeeecCceEEEeecc--
Q 041325 127 GDAVKSLVVL-GDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLK-NKYYERIATLPTLNDRFTKCFLANNYVQVRRHK-- 202 (450)
Q Consensus 127 ~~~v~~l~~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 202 (450)
...|.+++|+ +..|++++.||.|++||+++++........... ......+. .+ .+...+....++.+.++...
T Consensus 253 ~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~l~~~~~~g~i~~~d~~~~ 329 (615)
T 1pgu_A 253 QGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVV-AT--GNGRIISLSLDGTLNFYELGHD 329 (615)
T ss_dssp CSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEE-EE--ETTEEEEEETTSCEEEEETTEE
T ss_pred CCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEE-eC--CCCeEEEEECCCCEEEEECCCC
Confidence 8999999997 223999999999999999988665443332110 00111111 11 22233333333333333211
Q ss_pred --eeee---------------------------------ecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCC------
Q 041325 203 --KCTW---------------------------------VHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSD------ 241 (450)
Q Consensus 203 --~~~~---------------------------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~------ 241 (450)
...+ ..|...|.+++| +++..+++++.|+.|++||+.+
T Consensus 330 ~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~~ 408 (615)
T 1pgu_A 330 EVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGSQ 408 (615)
T ss_dssp EEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSSC
T ss_pred cEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccCC
Confidence 1122 345666666666 4467788888888888887753
Q ss_pred ----------------------------CeEEEEeecccccceEEEEEeecCCcEEEEEcC-CCcEEEEeCcchhhhccc
Q 041325 242 ----------------------------FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSA-DTKIKVWKKLRAALQVNK 292 (450)
Q Consensus 242 ----------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~ 292 (450)
++.+..+. +...+.+++++ ..++++++. ||.|++||+..++
T Consensus 409 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~~l~~~~~~d~~i~~~~~~~~~----- 478 (615)
T 1pgu_A 409 PKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR--LNSPGSAVSLS---QNYVAVGLEEGNTIQVFKLSDLE----- 478 (615)
T ss_dssp EEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE--CSSCEEEEEEC---SSEEEEEETTTSCEEEEETTEEE-----
T ss_pred ceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc--cCCCceEEEEc---CCEEEEeecCCCeEEEEECCCcc-----
Confidence 33333333 66788899888 458999999 9999999997765
Q ss_pred cchhh-hhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccC-CccceEEEEEeC-
Q 041325 293 KHSLV-QTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG-HTKAILCLAVVS- 369 (450)
Q Consensus 293 ~~~~~-~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~- 369 (450)
.. ..+..|...|++++|+|++++|++++.||.|++||+.+++.+ ..+.+ |...|++++|++
T Consensus 479 ---~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~-------------~~~~~~h~~~v~~~~~sp~ 542 (615)
T 1pgu_A 479 ---VSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK-------------TSRWAFRTSKINAISWKPA 542 (615)
T ss_dssp ---EEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-------------ECCSCCCSSCEEEEEECCC
T ss_pred ---ccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcce-------------eEeecCCCCceeEEEEcCc
Confidence 22 556678999999999999999999999999999999988755 45555 999999999966
Q ss_pred ---------C--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEc
Q 041325 370 ---------N--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSG 438 (450)
Q Consensus 370 ---------~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~ 438 (450)
+ +|++++.||.|++||+.++ .+++..+.+|...|++++|+|++. |+++
T Consensus 543 ~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~~h~~~v~~l~~s~~~~--------------l~s~ 601 (615)
T 1pgu_A 543 EKGANEEEIEEDLVATGSLDTNIFIYSVKRP-------MKIIKALNAHKDGVNNLLWETPST--------------LVSS 601 (615)
T ss_dssp C------CCSCCEEEEEETTSCEEEEESSCT-------TCCEEETTSSTTCEEEEEEEETTE--------------EEEE
T ss_pred cccccccccCCCEEEEEcCCCcEEEEECCCC-------ceechhhhcCccceEEEEEcCCCC--------------eEEe
Confidence 4 9999999999999999874 256778899999999999999975 8999
Q ss_pred ccCCcEEEEEeC
Q 041325 439 SLDCEIKIWQIR 450 (450)
Q Consensus 439 ~~Dg~i~iw~l~ 450 (450)
+.||.|++|+++
T Consensus 602 ~~d~~v~iw~~~ 613 (615)
T 1pgu_A 602 GADACIKRWNVV 613 (615)
T ss_dssp ETTSCEEEEEEC
T ss_pred cCCceEEEEeee
Confidence 999999999985
No 47
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-39 Score=302.49 Aligned_cols=304 Identities=12% Similarity=0.027 Sum_probs=219.4
Q ss_pred CCcceEEEEE--eC---------CEEEE-------------------eeCCCcEEEecCCCCCceeeeecCCCCcceeEE
Q 041325 74 NSSYIPSLAI--AG---------KLLYG-------------------GSSNGEIRAWNRDPNNYVNITSTDVGDHANVVA 123 (450)
Q Consensus 74 h~~~v~~~~~--d~---------~~l~t-------------------gs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~ 123 (450)
+.+.|.+|+| ++ ++||+ ++.||+|+|||+.+++.... ....+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~--------~~~~l 203 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCV--------KVQTI 203 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEE--------EEEEE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCce--------EEEEE
Confidence 5788888888 44 56665 55788999999877663211 11235
Q ss_pred ecCCCceEEEEEeCC--------eEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCce
Q 041325 124 TGNGDAVKSLVVLGD--------KLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNY 195 (450)
Q Consensus 124 ~~h~~~v~~l~~~~~--------~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (450)
.+|.+.|.+++|+|+ .|++++.||+|++||+..+.... . ... .
T Consensus 204 ~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~--------~---~~~-~----------------- 254 (524)
T 2j04_B 204 VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV--------H---VFK-M----------------- 254 (524)
T ss_dssp EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS--------S---EEE-C-----------------
T ss_pred EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc--------c---cce-e-----------------
Confidence 678889999999985 49999999999999998662100 0 000 0
Q ss_pred EEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeE-EEEeecccccceEEEE--EeecCCcEEEEE
Q 041325 196 VQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRC-LESVKNAHDDAINAIV--VSKSNDGFVYTG 272 (450)
Q Consensus 196 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~--~~~~~~~~l~~~ 272 (450)
...+...+.+|...|.+++|++++ .|++|+.||+|++||++++.. ...+. .|...|.+++ +++++..+|+++
T Consensus 255 ---~~~p~~~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~-~H~~~V~sv~~~~s~~g~~~laS~ 329 (524)
T 2j04_B 255 ---CEKPSLTLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQ-VHDSYILSVSTAYSDFEDTVVSTV 329 (524)
T ss_dssp ---CCSCSEEECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEE-CSSSCEEEEEEECCTTSCCEEEEE
T ss_pred ---ecCceEEEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEee-cccccEEEEEEEcCCCCCeEEEEe
Confidence 001223455789999999999864 899999999999999987643 34455 7999999994 444322689999
Q ss_pred cCCCcEEEEeCcchhhhccccchhhhhHhhccc--ceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCcee
Q 041325 273 SADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS--AVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMV 350 (450)
Q Consensus 273 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 350 (450)
+.|++|++||+++++ ....+.+|.. .|.+++|+|+++.+++++.|+.|++||++++.++
T Consensus 330 S~D~tvklWD~~~~~--------~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~----------- 390 (524)
T 2j04_B 330 AVDGYFYIFNPKDIA--------TTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAV----------- 390 (524)
T ss_dssp ETTSEEEEECGGGHH--------HHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCC-----------
T ss_pred ccCCeEEEEECCCCC--------cccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccc-----------
Confidence 999999999998766 4444555543 4789999999999999999999999999987643
Q ss_pred eeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCCCcccc---------------------C-------------
Q 041325 351 LKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDH---------------------Q------------- 394 (450)
Q Consensus 351 ~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~---------------------~------------- 394 (450)
..+.+|...|++++|+++ +|++|+.||+|++||+....... .
T Consensus 391 --~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~ 468 (524)
T 2j04_B 391 --HPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYP 468 (524)
T ss_dssp --EEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCCCCC
T ss_pred --eeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCceecc
Confidence 356689999999999954 89999999999999865321110 0
Q ss_pred --CCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 395 --KGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 395 --~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
....++..+.+|...|.+|+|+|++.. +.++++|+.||.|+||+++
T Consensus 469 ~~~~g~~~~~l~gh~~~V~~Vafsp~~~~----------~~~lAsg~~~g~vrlw~l~ 516 (524)
T 2j04_B 469 LTVNDVSKAKIDAHGINITCTKWNETSAG----------GKCYAFSNSAGLLTLEYLS 516 (524)
T ss_dssp -------------CCCSCCCEEECCSTTT----------TTEEEEECTTSEEEEEECS
T ss_pred cccCCcceeeecCCCceEEEEECCCCCCc----------cHHHHhhccCceEEEEEcc
Confidence 012345567789999999999999531 1189999999999999985
No 48
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=7.8e-38 Score=287.90 Aligned_cols=316 Identities=19% Similarity=0.273 Sum_probs=239.2
Q ss_pred CccceeeeEEeecCCCcceEEEEE---eCCEEEEeeCCCcEEEecCCCCCceeeeecCCC-CcceeEEecCCCceEEEEE
Q 041325 60 ASEHQCSATLKVKGNSSYIPSLAI---AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVG-DHANVVATGNGDAVKSLVV 135 (450)
Q Consensus 60 ~~~~~~~~~l~~~~h~~~v~~~~~---d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~-~~~~~~~~~h~~~v~~l~~ 135 (450)
....+....+. +|.+.|++++| ++++|++|+.||.|++||+.++........... ........+|...|.+++|
T Consensus 30 ~~~~~~~~~~~--~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 107 (408)
T 4a11_B 30 LELNKDRDVER--IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQW 107 (408)
T ss_dssp EEECTTEEECC--CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEE
T ss_pred cccCcceeeee--ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEE
Confidence 34445566666 99999999999 689999999999999999998765443211000 0000001259999999999
Q ss_pred eC-Ce--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCc
Q 041325 136 LG-DK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDT 212 (450)
Q Consensus 136 ~~-~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (450)
++ +. |++++.||.|++||+.++.. ...+ .+...
T Consensus 108 ~~~~~~~l~s~~~d~~i~iwd~~~~~~----------------~~~~----------------------------~~~~~ 143 (408)
T 4a11_B 108 YPHDTGMFTSSSFDKTLKVWDTNTLQT----------------ADVF----------------------------NFEET 143 (408)
T ss_dssp CTTCTTCEEEEETTSEEEEEETTTTEE----------------EEEE----------------------------ECSSC
T ss_pred ccCCCcEEEEEeCCCeEEEeeCCCCcc----------------ceec----------------------------cCCCc
Confidence 98 33 99999999999999998732 1111 25667
Q ss_pred eEEEEEcc---CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhh
Q 041325 213 VSALALSS---DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQ 289 (450)
Q Consensus 213 v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 289 (450)
+.++.+++ ++.++++++.|+.|++||+++++.+..+. .|...|.+++|+|++..++++++.||.|++||++.....
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~ 222 (408)
T 4a11_B 144 VYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQ-GHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGC 222 (408)
T ss_dssp EEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEEC-CCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCC
T ss_pred eeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeec-CCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcc
Confidence 89999988 44599999999999999999999888887 799999999999976667999999999999999765411
Q ss_pred cc--------ccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccc
Q 041325 290 VN--------KKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA 361 (450)
Q Consensus 290 ~~--------~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (450)
.. ...........|...|.+++|+|++++|++++.||.|++||+.+++.......... .......
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-------~~~~~~~ 295 (408)
T 4a11_B 223 LITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVC-------NNSKKGL 295 (408)
T ss_dssp SEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCC-------CCCSSCC
T ss_pred cccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceecccccc-------ccccccc
Confidence 00 11112333357889999999999999999999999999999998765421111000 0001111
Q ss_pred eEEEEEe-CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEccc
Q 041325 362 ILCLAVV-SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSL 440 (450)
Q Consensus 362 v~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~ 440 (450)
....... ...+++++.|+.|++||+.++ +++..+.+|...|++++|+|++. +|++++.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~i~v~d~~~~--------~~~~~~~~~~~~v~~~~~s~~~~-------------~l~s~~~ 354 (408)
T 4a11_B 296 KFTVSCGCSSEFVFVPYGSTIAVYTVYSG--------EQITMLKGHYKTVDCCVFQSNFQ-------------ELYSGSR 354 (408)
T ss_dssp CCEECCSSSSCEEEEEETTEEEEEETTTC--------CEEEEECCCSSCEEEEEEETTTT-------------EEEEEET
T ss_pred eeEEecCCCceEEEEecCCEEEEEECcCC--------cceeeeccCCCeEEEEEEcCCCC-------------EEEEECC
Confidence 1122222 447778888999999999875 77888999999999999999999 9999999
Q ss_pred CCcEEEEEeC
Q 041325 441 DCEIKIWQIR 450 (450)
Q Consensus 441 Dg~i~iw~l~ 450 (450)
||.|++||++
T Consensus 355 dg~i~iw~~~ 364 (408)
T 4a11_B 355 DCNILAWVPS 364 (408)
T ss_dssp TSCEEEEEEC
T ss_pred CCeEEEEeCC
Confidence 9999999984
No 49
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-38 Score=281.59 Aligned_cols=258 Identities=21% Similarity=0.354 Sum_probs=202.5
Q ss_pred EEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeec
Q 041325 122 VATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRH 201 (450)
Q Consensus 122 ~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (450)
.+.+|.+.|.+++|+++.|++|+.|++|++||+..+.. .....+.
T Consensus 9 ~~~~h~~~v~~~~~s~~~las~~~D~~i~lw~~~~~~~--------------~~~~~~~--------------------- 53 (330)
T 2hes_X 9 SLKLYKEKIWSFDFSQGILATGSTDRKIKLVSVKYDDF--------------TLIDVLD--------------------- 53 (330)
T ss_dssp EEECCSSCEEEEEEETTEEEEEESSSCEEEEECSSSCC--------------EEEEEEC---------------------
T ss_pred eeccCCCceeeeccCCCEEEEEcCCCEEEEEEecCCCe--------------EEEEEEe---------------------
Confidence 47799999999999999999999999999999986521 0011110
Q ss_pred ceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCC-------CeEEEEeecccccceEEEEEeecCCcEEEEEcC
Q 041325 202 KKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSD-------FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSA 274 (450)
Q Consensus 202 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 274 (450)
..+|.+.|.+++|+|++++|++|+.|+.|++||+.. .+.+..+. +|...|.+++|+|+ ..+|++|+.
T Consensus 54 ----~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~sp~-g~~las~s~ 127 (330)
T 2hes_X 54 ----ETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIE-GHENEVKGVAWSND-GYYLATCSR 127 (330)
T ss_dssp ----TTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC-----CEEEEEECTT-SCEEEEEET
T ss_pred ----cCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEc-CCCCcEEEEEECCC-CCEEEEEeC
Confidence 013889999999999999999999999999999853 34555666 89999999999995 458999999
Q ss_pred CCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeecc
Q 041325 275 DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGA 354 (450)
Q Consensus 275 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 354 (450)
|+.|++||++... .....+..+.+|...|.+++|+|++++|++|+.|+.|++||..++.. .....
T Consensus 128 D~~v~iwd~~~~~----~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~-----------~~~~~ 192 (330)
T 2hes_X 128 DKSVWIWETDESG----EEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDW-----------ECVAV 192 (330)
T ss_dssp TSCEEEEECCTTC----CCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-----------EEEEE
T ss_pred CCEEEEEeccCCC----CCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCe-----------eEEEE
Confidence 9999999985432 12234556778999999999999999999999999999999876521 13357
Q ss_pred ccCCccceEEEEEeCC----eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecC-CCcceEEEEEEecCCCCCCCCCCC
Q 041325 355 LRGHTKAILCLAVVSN----LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG-HRRPVKCLTAVVDSDYSNRNSDHS 429 (450)
Q Consensus 355 ~~~~~~~v~~~~~~~~----~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~~~~ 429 (450)
+.+|...|.+++|+++ +|++|+.|++|++||+..+.......+.+...+.+ |...|.+++|++++
T Consensus 193 ~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~---------- 262 (330)
T 2hes_X 193 LNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG---------- 262 (330)
T ss_dssp ECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS----------
T ss_pred ccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC----------
Confidence 7899999999999864 79999999999999987642221222345555655 99999999999554
Q ss_pred CceEEEEEcccCCcEEEEEe
Q 041325 430 STSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 430 ~~~~~l~s~~~Dg~i~iw~l 449 (450)
+|++++.||.|++|++
T Consensus 263 ----~l~s~~~dg~v~iw~~ 278 (330)
T 2hes_X 263 ----LIASVGADGVLAVYEE 278 (330)
T ss_dssp ----CEEEEETTSCEEEEEE
T ss_pred ----EEEEEeCCCEEEEEEc
Confidence 6999999999999986
No 50
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=3e-38 Score=291.93 Aligned_cols=329 Identities=17% Similarity=0.242 Sum_probs=245.5
Q ss_pred CCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEee
Q 041325 15 KEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGS 92 (450)
Q Consensus 15 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs 92 (450)
..+.|+|++..+.+...+..+.. +.....+....+. +| ..+....+ ++++|++|+
T Consensus 60 ~~~~~s~~g~~l~~~~~d~~v~i--------------------~d~~~~~~~~~~~--~~-~~~~~~~~~~~~~~l~~~~ 116 (420)
T 3vl1_A 60 KGNTFEKVGSHLYKARLDGHDFL--------------------FNTIIRDGSKMLK--RA-DYTAVDTAKLQMRRFILGT 116 (420)
T ss_dssp TTCEEEEEETTEEEEEETTEEEE--------------------EECCSEETTTTSC--SC-CEEEEEEECSSSCEEEEEE
T ss_pred cceeeeecCCeEEEEEcCCcEEE--------------------EEecccceeeEEe--cC-CceEEEEEecCCCEEEEEE
Confidence 46777888777777666555543 1222223333333 45 33333344 899999999
Q ss_pred CCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccc
Q 041325 93 SNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKN 170 (450)
Q Consensus 93 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~ 170 (450)
.||.|++||+.+++.... +.+|...|.+++|+++. |++++.||.|++||+++++
T Consensus 117 ~dg~i~iwd~~~~~~~~~------------~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~------------ 172 (420)
T 3vl1_A 117 TEGDIKVLDSNFNLQREI------------DQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGS------------ 172 (420)
T ss_dssp TTSCEEEECTTSCEEEEE------------TTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC------------
T ss_pred CCCCEEEEeCCCcceeee------------cccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCc------------
Confidence 999999999988765544 45899999999999876 9999999999999998772
Q ss_pred cceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeec
Q 041325 171 KYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKN 250 (450)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 250 (450)
....+.+|...|.+++|+|++++|++++.|+.|++||+++++.+..+..
T Consensus 173 -------------------------------~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~ 221 (420)
T 3vl1_A 173 -------------------------------NPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNR 221 (420)
T ss_dssp -------------------------------CCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECB
T ss_pred -------------------------------CceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeec
Confidence 1223447999999999999999999999999999999999999888863
Q ss_pred --ccccceEEEEEeec--------------------CCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceE
Q 041325 251 --AHDDAINAIVVSKS--------------------NDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVT 308 (450)
Q Consensus 251 --~~~~~v~~~~~~~~--------------------~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 308 (450)
.+...+.++++.+. ...++++++.||.|++||+++++. .......|...|.
T Consensus 222 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~-------~~~~~~~~~~~v~ 294 (420)
T 3vl1_A 222 KENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQ-------TIQLPSKFTCSCN 294 (420)
T ss_dssp TTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCE-------EEEECCTTSSCEE
T ss_pred CCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCce-------eEEcccccCCCce
Confidence 34556666666432 344899999999999999977651 1222235788999
Q ss_pred EEEEcCCCC-EEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccC-CccceEEEEEe-CCeEEEEeCCCeEEEee
Q 041325 309 ALALSTDGT-VLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG-HTKAILCLAVV-SNLLFSGSSDNTIRIWR 385 (450)
Q Consensus 309 ~l~~~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~-~~~l~s~~~dg~v~iwd 385 (450)
+++|+|+++ +|++|+.||.|++||+++++.. ...+.. |...|.++.+. +++|++++.||.|++|+
T Consensus 295 ~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~------------~~~~~~~~~~~v~~~~~~~~~~l~s~~~d~~v~iw~ 362 (420)
T 3vl1_A 295 SLTVDGNNANYIYAGYENGMLAQWDLRSPECP------------VGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDI 362 (420)
T ss_dssp EEEECSSCTTEEEEEETTSEEEEEETTCTTSC------------SEEEEESTTSCEEEEEEETTEEEEEETTTEEEEEEE
T ss_pred eEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCc------------hhhhhccCCCCceEEEeCCCCEEEEecCCccEEEEe
Confidence 999999998 9999999999999999986531 123333 67788888877 44999999999999999
Q ss_pred CCCCccccC-CCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 386 RSSSVTDHQ-KGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 386 ~~~~~~~~~-~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+........ ........+..|...|.+++|+|++.. ++ .+++++.+|.+.+|++.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~---------~g-~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 363 ISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDES---------NG-EVLEVGKNNFCALYNLS 418 (420)
T ss_dssp ECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSS---------SC-EEEEEETTTEEEEEESC
T ss_pred ccCCCCCccceeccCccEEccCCcceEEEEEccCCCC---------cc-eEEEEcCCceEEEEecc
Confidence 886421110 001223346678999999999999871 12 36666678999999974
No 51
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-39 Score=298.44 Aligned_cols=287 Identities=17% Similarity=0.253 Sum_probs=234.1
Q ss_pred CCcceEEEEE--eCC-EEEEe----------eCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-
Q 041325 74 NSSYIPSLAI--AGK-LLYGG----------SSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK- 139 (450)
Q Consensus 74 h~~~v~~~~~--d~~-~l~tg----------s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~- 139 (450)
+...|.+++| +++ +|++| +.||.|++||+.++..... .....|...|.+++|+++.
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~----------~~~~~~~~~v~~~~~s~~~~ 80 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP----------IASLQVDSKFNDLDWSHNNK 80 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC----------SCCCCCSSCEEEEEECSSSS
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE----------EEEEecCCceEEEEECCCCC
Confidence 4457888999 665 99999 8999999999987753211 0123688899999999877
Q ss_pred -EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEE
Q 041325 140 -LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALAL 218 (450)
Q Consensus 140 -l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 218 (450)
|++++.||.|++||+...... ......+.+|...|.+++|
T Consensus 81 ~l~~~~~dg~v~vw~~~~~~~~---------------------------------------~~~~~~~~~h~~~v~~~~~ 121 (416)
T 2pm9_A 81 IIAGALDNGSLELYSTNEANNA---------------------------------------INSMARFSNHSSSVKTVKF 121 (416)
T ss_dssp CEEEEESSSCEEEECCSSTTSC---------------------------------------CCEEEECCCSSSCCCEEEE
T ss_pred eEEEEccCCeEEEeeccccccc---------------------------------------ccchhhccCCccceEEEEE
Confidence 999999999999999873100 0012233469999999999
Q ss_pred ccC-CCEEEEEeCCCcEEEEecCCCe------EEEEe--ecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhh
Q 041325 219 SSD-GSLLYSTSWDRTFKIWRTSDFR------CLESV--KNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQ 289 (450)
Q Consensus 219 ~~~-~~~l~~~~~dg~i~iwd~~~~~------~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 289 (450)
+|+ +++|++++.|+.|++||+.+++ ....+ ...|...|.+++|+|++..++++++.||.|++||+++++
T Consensus 122 ~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~-- 199 (416)
T 2pm9_A 122 NAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKK-- 199 (416)
T ss_dssp CSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTE--
T ss_pred cCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCC--
Confidence 998 8999999999999999999876 33322 126888999999999756799999999999999998765
Q ss_pred ccccchhhhhHhhc------ccceEEEEEcCCC-CEEEEeeCCC---cEEEEEcCCCceeeeCCCCCCceeeecccc-CC
Q 041325 290 VNKKHSLVQTLEKH------KSAVTALALSTDG-TVLYSGACDR---SILVWERDQGNYIVDGDDDSGHMVLKGALR-GH 358 (450)
Q Consensus 290 ~~~~~~~~~~~~~~------~~~i~~l~~~~~~-~~l~~g~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~ 358 (450)
.+..+..+ ...|.+++|+|++ .+|++++.|+ .|++||+++++. ....+. +|
T Consensus 200 ------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~------------~~~~~~~~~ 261 (416)
T 2pm9_A 200 ------EVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANT------------PLQTLNQGH 261 (416)
T ss_dssp ------EEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTS------------CSBCCCSCC
T ss_pred ------cceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCC------------CcEEeecCc
Confidence 33334333 7889999999997 6899999998 999999997632 224555 89
Q ss_pred ccceEEEEEeC---CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecC-CCCCCCCCCCCceEE
Q 041325 359 TKAILCLAVVS---NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDS-DYSNRNSDHSSTSFL 434 (450)
Q Consensus 359 ~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-~~~~~~~~~~~~~~~ 434 (450)
...|.+++|++ ++|++++.||.|++||+.++ +++..+.+|...|.+++|+|++ . +
T Consensus 262 ~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~--------~~~~~~~~~~~~v~~~~~s~~~~~-------------~ 320 (416)
T 2pm9_A 262 QKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA--------EQLSQFPARGNWCFKTKFAPEAPD-------------L 320 (416)
T ss_dssp SSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC--------CEEEEEECSSSCCCCEEECTTCTT-------------E
T ss_pred cCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC--------ccceeecCCCCceEEEEECCCCCC-------------E
Confidence 99999999975 49999999999999999874 6788889999999999999998 6 9
Q ss_pred EEEcccCCcEEEEEeC
Q 041325 435 VYSGSLDCEIKIWQIR 450 (450)
Q Consensus 435 l~s~~~Dg~i~iw~l~ 450 (450)
|++++.||.|++|+++
T Consensus 321 l~s~~~d~~i~iw~~~ 336 (416)
T 2pm9_A 321 FACASFDNKIEVQTLQ 336 (416)
T ss_dssp EEECCSSSEEEEEESC
T ss_pred EEEEecCCcEEEEEcc
Confidence 9999999999999974
No 52
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-37 Score=285.51 Aligned_cols=288 Identities=18% Similarity=0.270 Sum_probs=234.2
Q ss_pred eeeeEEeecCCCcc--eEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--
Q 041325 64 QCSATLKVKGNSSY--IPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~--v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 139 (450)
.+.+.+...+|... +.+++|++..+++++.||.|++||+.+++.... ....|...|.+++|+++.
T Consensus 80 ~p~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~-----------~~~~~~~~v~~v~~s~~~~~ 148 (401)
T 4aez_A 80 TPERVLDAPGIIDDYYLNLLDWSNLNVVAVALERNVYVWNADSGSVSAL-----------AETDESTYVASVKWSHDGSF 148 (401)
T ss_dssp SCSEEEECTTCCCCTTCBCEEECTTSEEEEEETTEEEEEETTTCCEEEE-----------EECCTTCCEEEEEECTTSSE
T ss_pred CcceeeeCCCCcCCceEEEEeecCCCEEEEECCCeEEEeeCCCCcEeEe-----------eecCCCCCEEEEEECCCCCE
Confidence 34456666677764 666888888899999999999999999886655 123488899999999876
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS 219 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (450)
|++|+.||.|++||+.+++. ...+.+|...|.+++|
T Consensus 149 l~~~~~dg~i~iwd~~~~~~-------------------------------------------~~~~~~~~~~v~~~~~- 184 (401)
T 4aez_A 149 LSVGLGNGLVDIYDVESQTK-------------------------------------------LRTMAGHQARVGCLSW- 184 (401)
T ss_dssp EEEEETTSCEEEEETTTCCE-------------------------------------------EEEECCCSSCEEEEEE-
T ss_pred EEEECCCCeEEEEECcCCeE-------------------------------------------EEEecCCCCceEEEEE-
Confidence 99999999999999988732 1223368899999999
Q ss_pred cCCCEEEEEeCCCcEEEEecC-CCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhh
Q 041325 220 SDGSLLYSTSWDRTFKIWRTS-DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQ 298 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 298 (450)
+++++++++.||.|++||++ ....+..+. .|...|.+++|+| ...++++++.||.|++||+++++ ...
T Consensus 185 -~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~v~~~~~~~-~~~~l~s~~~d~~v~iwd~~~~~--------~~~ 253 (401)
T 4aez_A 185 -NRHVLSSGSRSGAIHHHDVRIANHQIGTLQ-GHSSEVCGLAWRS-DGLQLASGGNDNVVQIWDARSSI--------PKF 253 (401)
T ss_dssp -ETTEEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTCSS--------EEE
T ss_pred -CCCEEEEEcCCCCEEEEecccCcceeeEEc-CCCCCeeEEEEcC-CCCEEEEEeCCCeEEEccCCCCC--------ccE
Confidence 46799999999999999999 455666666 8999999999998 45589999999999999997765 555
Q ss_pred hHhhcccceEEEEEcCCCC-EEEEee--CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEE
Q 041325 299 TLEKHKSAVTALALSTDGT-VLYSGA--CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLF 373 (450)
Q Consensus 299 ~~~~~~~~i~~l~~~~~~~-~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~ 373 (450)
.+..|...|.+++|+|++. ++++|+ .|+.|++||+.+++.+ ..+ .+...|.+++|++ ++++
T Consensus 254 ~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~-------------~~~-~~~~~v~~~~~s~~~~~l~ 319 (401)
T 4aez_A 254 TKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARV-------------NTV-DAGSQVTSLIWSPHSKEIM 319 (401)
T ss_dssp EECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEE-------------EEE-ECSSCEEEEEECSSSSEEE
T ss_pred EecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEE-------------EEE-eCCCcEEEEEECCCCCeEE
Confidence 6667899999999999764 556654 7999999999988755 222 3567899999985 4777
Q ss_pred E--EeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 374 S--GSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 374 s--~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+ |+.||.|++||+.++ .......+.+|...|.+++|+|++. +|++++.||.|++|+++
T Consensus 320 ~~~g~~dg~i~v~~~~~~------~~~~~~~~~~h~~~v~~~~~s~dg~-------------~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 320 STHGFPDNNLSIWSYSSS------GLTKQVDIPAHDTRVLYSALSPDGR-------------ILSTAASDENLKFWRVY 379 (401)
T ss_dssp EEECTTTCEEEEEEEETT------EEEEEEEEECCSSCCCEEEECTTSS-------------EEEEECTTSEEEEEECC
T ss_pred EEeecCCCcEEEEecCCc------cceeEEEecCCCCCEEEEEECCCCC-------------EEEEEeCCCcEEEEECC
Confidence 7 558999999999863 1244555789999999999999999 99999999999999974
No 53
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=9.2e-38 Score=288.15 Aligned_cols=288 Identities=19% Similarity=0.338 Sum_probs=228.5
Q ss_pred eeeEEeecCC--CcceEEEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--
Q 041325 65 CSATLKVKGN--SSYIPSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-- 139 (450)
Q Consensus 65 ~~~~l~~~~h--~~~v~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 139 (450)
+.+.|...+- .-+++.|+| .+++||+|. |++|+|||..+++..... .+.+|...|++|+|++++
T Consensus 93 p~~~l~ap~~~~d~y~~~l~wS~~n~lAvgl-d~tV~lWd~~tg~~~~~~----------~~~~~~~~V~sv~fspdg~~ 161 (420)
T 4gga_A 93 PDRILDAPEIRNDYYLNLVDWSSGNVLAVAL-DNSVYLWSASSGDILQLL----------QMEQPGEYISSVAWIKEGNY 161 (420)
T ss_dssp CSEEEECTTCCCCTTCBCEEECTTSEEEEEE-TTEEEEEETTTCCEEEEE----------ECCSTTCCEEEEEECTTSSE
T ss_pred CceEEECCCCcccccceeEEECCCCEEEEEe-CCEEEEEECCCCCEEEEE----------EecCCCCcEEEEEECCCCCE
Confidence 3455553222 336788999 567887775 899999999999876652 234788899999999876
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS 219 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (450)
|++|+.||+|++||+++++ .+ ..+.+|...+.+++++
T Consensus 162 lasgs~Dg~v~iWd~~~~~----------------~~---------------------------~~~~~h~~~v~~~s~~ 198 (420)
T 4gga_A 162 LAVGTSSAEVQLWDVQQQK----------------RL---------------------------RNMTSHSARVGSLSWN 198 (420)
T ss_dssp EEEEETTSCEEEEETTTTE----------------EE---------------------------EEECCCSSCEEEEEEE
T ss_pred EEEEECCCeEEEEEcCCCc----------------EE---------------------------EEEeCCCCceEEEeeC
Confidence 9999999999999999883 22 2334688889888775
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCeE-EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhh
Q 041325 220 SDGSLLYSTSWDRTFKIWRTSDFRC-LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQ 298 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 298 (450)
+.++++|+.|+.+++||...... +..+. .|...+..+.+.|. ..++++++.|+.+++|+...++ .....+.
T Consensus 199 --~~~l~sgs~d~~i~~~d~~~~~~~~~~~~-~h~~~~~~~~~~~~-g~~l~s~~~D~~v~i~~~~~~~----~~~~~~~ 270 (420)
T 4gga_A 199 --SYILSSGSRSGHIHHHDVRVAEHHVATLS-GHSQEVCGLRWAPD-GRHLASGGNDNLVNVWPSAPGE----GGWVPLQ 270 (420)
T ss_dssp --TTEEEEEETTSEEEEEETTSSSCEEEEEE-CCSSCEEEEEECTT-SSEEEEEETTSCEEEEESSCCS----SCSCCSE
T ss_pred --CCEEEEEeCCCceeEeeecccceeeEEec-ccccceeeeeecCC-CCeeeeeeccccceEEeecccc----ccceeee
Confidence 67999999999999999987544 44555 89999999999984 4489999999999999998765 2223445
Q ss_pred hHhhcccceEEEEEcCCCC-EEEE--eeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEE
Q 041325 299 TLEKHKSAVTALALSTDGT-VLYS--GACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLF 373 (450)
Q Consensus 299 ~~~~~~~~i~~l~~~~~~~-~l~~--g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~ 373 (450)
....|...|.+++|+|++. ++++ |+.|+.|++||+.+++.. ..+. +...+.++.|.++ .++
T Consensus 271 ~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~-------------~~~~-~~~~v~~~~~~~~~~~lv 336 (420)
T 4gga_A 271 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL-------------SAVD-AHSQVCSILWSPHYKELI 336 (420)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEE-------------EEEE-CSSCEEEEEEETTTTEEE
T ss_pred eecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccc-------------eeec-cccceeeeeecCCCCeEE
Confidence 5667889999999999654 5554 457999999999998765 2333 3456788888743 555
Q ss_pred EE--eCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 374 SG--SSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 374 s~--~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
++ +.|+.|+|||+.++ +++..+.+|.+.|++++|+|++. +|+|||.||+|+|||+
T Consensus 337 ~~sg~~d~~I~iwd~~~~--------~~v~~l~gH~~~V~~l~~spdg~-------------~l~S~s~D~tvriWdv 393 (420)
T 4gga_A 337 SGHGFAQNQLVIWKYPTM--------AKVAELKGHTSRVLSLTMSPDGA-------------TVASAAADETLRLWRC 393 (420)
T ss_dssp EEECTTTCCEEEEETTTC--------CEEEEECCCSSCEEEEEECTTSS-------------CEEEEETTTEEEEECC
T ss_pred EEEecCCCEEEEEECCCC--------cEEEEEcCCCCCEEEEEEcCCCC-------------EEEEEecCCeEEEEEC
Confidence 54 47999999999874 78889999999999999999999 8999999999999997
No 54
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=5.1e-38 Score=275.76 Aligned_cols=254 Identities=17% Similarity=0.267 Sum_probs=204.7
Q ss_pred EEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEe
Q 041325 122 VATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVR 199 (450)
Q Consensus 122 ~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (450)
.+.+|.+.|.+++|++++ |++|+.|++|++||+.....
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~---------------------------------------- 43 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH---------------------------------------- 43 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB----------------------------------------
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc----------------------------------------
Confidence 467999999999999776 99999999999999975411
Q ss_pred ecceeeeecCCCceEEEEEcc--CCCEEEEEeCCCcEEEEecCCCe--EEEEeecccccceEEEEEeecC-CcEEEEEcC
Q 041325 200 RHKKCTWVHHVDTVSALALSS--DGSLLYSTSWDRTFKIWRTSDFR--CLESVKNAHDDAINAIVVSKSN-DGFVYTGSA 274 (450)
Q Consensus 200 ~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~ 274 (450)
.....+.+|.+.|.+++|++ ++++|++|+.|++|++||+++++ .+..+. .|...|.+++|+|+. ..+|++++.
T Consensus 44 -~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~g~~l~s~s~ 121 (297)
T 2pm7_B 44 -KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHA-VHSASVNSVQWAPHEYGPMLLVASS 121 (297)
T ss_dssp -CCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEEC-CCSSCEEEEEECCGGGCSEEEEEET
T ss_pred -EEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEee-cCCCceeEEEeCcCCCCcEEEEEEC
Confidence 11234457999999999986 48999999999999999998874 444454 688999999999863 458999999
Q ss_pred CCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCC-------------CCEEEEeeCCCcEEEEEcCCCceeee
Q 041325 275 DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTD-------------GTVLYSGACDRSILVWERDQGNYIVD 341 (450)
Q Consensus 275 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-------------~~~l~~g~~dg~i~vwd~~~~~~~~~ 341 (450)
||.|++||++.... .....+.+|...|.+++|+|+ +++|++|+.|+.|++||+++++..
T Consensus 122 d~~v~~wd~~~~~~------~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~-- 193 (297)
T 2pm7_B 122 DGKVSVVEFKENGT------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-- 193 (297)
T ss_dssp TSEEEEEEBCSSSC------BCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTE--
T ss_pred CCcEEEEEecCCCc------eeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCce--
Confidence 99999999976431 012345678899999999997 579999999999999999875421
Q ss_pred CCCCCCceeeeccccCCccceEEEEEeC-----CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEe--cCCCcceEEEE
Q 041325 342 GDDDSGHMVLKGALRGHTKAILCLAVVS-----NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVL--EGHRRPVKCLT 414 (450)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~--~~h~~~v~~l~ 414 (450)
......+.+|...|.+++|++ ++|++++.|++|++||++... .. .....+ ..|...|.+++
T Consensus 194 -------~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~----~~-~~~~~~~~~~~~~~v~~~~ 261 (297)
T 2pm7_B 194 -------YVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQ----GP-WKKTLLKEEKFPDVLWRAS 261 (297)
T ss_dssp -------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT----SC-CEEEESSSSCCSSCEEEEE
T ss_pred -------EEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCC----Cc-cceeeeecccCCCcEEEEE
Confidence 123356789999999999986 489999999999999987631 11 112223 56888999999
Q ss_pred EEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 415 AVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
|+|+++ +|++++.||.|+||++.
T Consensus 262 ~s~~g~-------------~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 262 WSLSGN-------------VLALSGGDNKVTLWKEN 284 (297)
T ss_dssp ECSSSC-------------CEEEEETTSCEEEEEEC
T ss_pred ECCCCC-------------EEEEEcCCCcEEEEEEC
Confidence 999999 89999999999999863
No 55
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=1.3e-37 Score=273.14 Aligned_cols=252 Identities=20% Similarity=0.234 Sum_probs=199.4
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC----CeEEEEeCC
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG----DKLFSAHQD 146 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~~~d 146 (450)
+|...|++++| +|++||+|+.||+|+|||+.+.... ....+.+|.++|.+++|++ +.|++|+.|
T Consensus 7 ~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~----------~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D 76 (297)
T 2pm7_B 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHK----------LIDTLTGHEGPVWRVDWAHPKFGTILASCSYD 76 (297)
T ss_dssp SCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBC----------CCEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred CCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcE----------EEEEEccccCCeEEEEecCCCcCCEEEEEcCC
Confidence 99999999999 7999999999999999998753211 1123779999999999974 349999999
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC--CCE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD--GSL 224 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~ 224 (450)
|+|++||++++.. .....+..|...|.+++|+|+ +.+
T Consensus 77 ~~v~iWd~~~~~~-----------------------------------------~~~~~~~~h~~~v~~v~~~p~~~g~~ 115 (297)
T 2pm7_B 77 GKVMIWKEENGRW-----------------------------------------SQIAVHAVHSASVNSVQWAPHEYGPM 115 (297)
T ss_dssp TEEEEEEBSSSCB-----------------------------------------CCCEEECCCSSCEEEEEECCGGGCSE
T ss_pred CEEEEEEcCCCce-----------------------------------------EEEEEeecCCCceeEEEeCcCCCCcE
Confidence 9999999986521 011223468889999999997 899
Q ss_pred EEEEeCCCcEEEEecCCCeE--EEEeecccccceEEEEEeecC------------CcEEEEEcCCCcEEEEeCcchhhhc
Q 041325 225 LYSTSWDRTFKIWRTSDFRC--LESVKNAHDDAINAIVVSKSN------------DGFVYTGSADTKIKVWKKLRAALQV 290 (450)
Q Consensus 225 l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~------------~~~l~~~~~dg~i~vwd~~~~~~~~ 290 (450)
|++++.|+.|++||++++.. ...+. .|...|.+++|+|.. ..+|++|+.|+.|++||++.++
T Consensus 116 l~s~s~d~~v~~wd~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~--- 191 (297)
T 2pm7_B 116 LLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--- 191 (297)
T ss_dssp EEEEETTSEEEEEEBCSSSCBCCEEEE-CCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTT---
T ss_pred EEEEECCCcEEEEEecCCCceeeeeee-cccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCC---
Confidence 99999999999999987632 23344 789999999999852 3589999999999999987654
Q ss_pred cccchhhhhHhhcccceEEEEEcCCC---CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEE
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDG---TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV 367 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~---~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 367 (450)
........+.+|...|.+++|+|++ ++|++|+.|+.|++||+++.... ..........|...|.+++|
T Consensus 192 -~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~--------~~~~~~~~~~~~~~v~~~~~ 262 (297)
T 2pm7_B 192 -QTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP--------WKKTLLKEEKFPDVLWRASW 262 (297)
T ss_dssp -TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC--------CEEEESSSSCCSSCEEEEEE
T ss_pred -ceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc--------cceeeeecccCCCcEEEEEE
Confidence 2222345677899999999999984 89999999999999999864210 00011122567889999999
Q ss_pred eC--CeEEEEeCCCeEEEeeCCC
Q 041325 368 VS--NLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 368 ~~--~~l~s~~~dg~v~iwd~~~ 388 (450)
++ ++|++++.||.|++|+...
T Consensus 263 s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 263 SLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp CSSSCCEEEEETTSCEEEEEECT
T ss_pred CCCCCEEEEEcCCCcEEEEEECC
Confidence 85 4999999999999999764
No 56
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=1.6e-37 Score=279.38 Aligned_cols=279 Identities=16% Similarity=0.282 Sum_probs=226.3
Q ss_pred ccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEE
Q 041325 13 RNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYG 90 (450)
Q Consensus 13 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~t 90 (450)
.+..+.|+|+...+.+.+.+..+.. +...+.+..+.+. .|...|.+++| ++.+|++
T Consensus 66 ~V~~~~~s~d~~~l~s~s~Dg~v~v--------------------Wd~~~~~~~~~~~--~~~~~v~~~~~sp~g~~las 123 (354)
T 2pbi_B 66 KVLCMDWCKDKRRIVSSSQDGKVIV--------------------WDSFTTNKEHAVT--MPCTWVMACAYAPSGCAIAC 123 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEE--------------------EETTTCCEEEEEE--CSSSCCCEEEECTTSSEEEE
T ss_pred eEEEEEECCCCCEEEEEeCCCeEEE--------------------EECCCCCcceEEe--cCCCCEEEEEECCCCCEEEE
Confidence 4566677777777766666655543 3334456677777 89999999999 8999999
Q ss_pred eeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcc
Q 041325 91 GSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKL 168 (450)
Q Consensus 91 gs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 168 (450)
|+.|+.+++|++........ ......+.+|...|.+++|+++. |++++.|++|++||+++++.
T Consensus 124 g~~d~~i~v~~~~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~--------- 188 (354)
T 2pbi_B 124 GGLDNKCSVYPLTFDKNENM------AAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQL--------- 188 (354)
T ss_dssp ESTTSEEEEEECCCCTTCCS------GGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE---------
T ss_pred eeCCCCEEEEEEeccccccc------cccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeE---------
Confidence 99999999999875432111 11223467899999999999776 99999999999999998732
Q ss_pred cccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc--CCCEEEEEeCCCcEEEEecCCCeEEE
Q 041325 169 KNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS--DGSLLYSTSWDRTFKIWRTSDFRCLE 246 (450)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~ 246 (450)
...+.+|...|.+++++| ++++|++|+.||.|++||+++++++.
T Consensus 189 ----------------------------------~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~ 234 (354)
T 2pbi_B 189 ----------------------------------LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQ 234 (354)
T ss_dssp ----------------------------------EEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEE
T ss_pred ----------------------------------EEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 223447899999999987 57899999999999999999999998
Q ss_pred EeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhH--hhcccceEEEEEcCCCCEEEEeeC
Q 041325 247 SVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTL--EKHKSAVTALALSTDGTVLYSGAC 324 (450)
Q Consensus 247 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~i~~l~~~~~~~~l~~g~~ 324 (450)
.+. .|...|.+++|+|++ .+|++++.|+.|++||++..+ .+..+ ..+...+.+++|+|++++|++|+.
T Consensus 235 ~~~-~h~~~v~~v~~~p~~-~~l~s~s~D~~v~lwd~~~~~--------~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~ 304 (354)
T 2pbi_B 235 AFE-THESDVNSVRYYPSG-DAFASGSDDATCRLYDLRADR--------EVAIYSKESIIFGASSVDFSLSGRLLFAGYN 304 (354)
T ss_dssp EEC-CCSSCEEEEEECTTS-SEEEEEETTSCEEEEETTTTE--------EEEEECCTTCCSCEEEEEECTTSSEEEEEET
T ss_pred Eec-CCCCCeEEEEEeCCC-CEEEEEeCCCeEEEEECCCCc--------EEEEEcCCCcccceeEEEEeCCCCEEEEEEC
Confidence 887 899999999999854 589999999999999997654 11111 223457899999999999999999
Q ss_pred CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEee
Q 041325 325 DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWR 385 (450)
Q Consensus 325 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd 385 (450)
|+.|++||+.+++.+ ..+.+|...|++++|+++ +|++|+.||.|++|+
T Consensus 305 d~~i~vwd~~~~~~~-------------~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 305 DYTINVWDVLKGSRV-------------SILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TSCEEEEETTTCSEE-------------EEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred CCcEEEEECCCCceE-------------EEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 999999999987754 567789999999999854 999999999999996
No 57
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=1.1e-37 Score=276.50 Aligned_cols=291 Identities=21% Similarity=0.287 Sum_probs=227.6
Q ss_pred ccCCcccCCCccCCCC-CccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--e
Q 041325 8 PMPCRRNKEPKFQPSS-NHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--A 84 (450)
Q Consensus 8 ~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d 84 (450)
..-...+..+.|+|+. ..+.+.+.+..+..=. ........+.++++++ +|...|.+++| +
T Consensus 14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~---------------~~~~~~~~~~~~~~~~--~h~~~v~~~~~s~d 76 (319)
T 3frx_A 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWK---------------LTGDDQKFGVPVRSFK--GHSHIVQDCTLTAD 76 (319)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEE---------------EEEETTEEEEEEEEEE--CCSSCEEEEEECTT
T ss_pred ccccceEEEEEccCCCccEEEEecCCccEEEec---------------CCCCCccccccceEEe--CCcccEEEEEECCC
Confidence 3334467778888865 5666676666665410 0000112345677888 99999999999 7
Q ss_pred CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEE
Q 041325 85 GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYY 162 (450)
Q Consensus 85 ~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~ 162 (450)
+++|++|+.||+|++||+.+++.... +.+|...|.+++|+++. |++|+.|++|++||++...
T Consensus 77 g~~l~s~s~D~~v~~wd~~~~~~~~~------------~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~---- 140 (319)
T 3frx_A 77 GAYALSASWDKTLRLWDVATGETYQR------------FVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQC---- 140 (319)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEE------------EECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCE----
T ss_pred CCEEEEEeCCCEEEEEECCCCCeeEE------------EccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCe----
Confidence 99999999999999999999886655 77999999999999776 9999999999999997541
Q ss_pred eccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC------CCEEEEEeCCCcEEE
Q 041325 163 STSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD------GSLLYSTSWDRTFKI 236 (450)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~dg~i~i 236 (450)
...+.+|...|.++.+.|. +..+++++.|+.|++
T Consensus 141 ----------------------------------------~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~ 180 (319)
T 3frx_A 141 ----------------------------------------LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180 (319)
T ss_dssp ----------------------------------------EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEE
T ss_pred ----------------------------------------EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEE
Confidence 1223468889999999984 448999999999999
Q ss_pred EecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCC
Q 041325 237 WRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDG 316 (450)
Q Consensus 237 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 316 (450)
||+++++....+. +|...|.+++|+|+ ..+|++++.||.|++||+++++ .+..+. +...|.+++|+|++
T Consensus 181 wd~~~~~~~~~~~-~h~~~v~~~~~sp~-g~~l~s~~~dg~i~iwd~~~~~--------~~~~~~-~~~~v~~~~~sp~~ 249 (319)
T 3frx_A 181 WNLNQFQIEADFI-GHNSNINTLTASPD-GTLIASAGKDGEIMLWNLAAKK--------AMYTLS-AQDEVFSLAFSPNR 249 (319)
T ss_dssp EETTTTEEEEEEC-CCCSCEEEEEECTT-SSEEEEEETTCEEEEEETTTTE--------EEEEEE-CCSCEEEEEECSSS
T ss_pred EECCcchhheeec-CCCCcEEEEEEcCC-CCEEEEEeCCCeEEEEECCCCc--------EEEEec-CCCcEEEEEEcCCC
Confidence 9999999888887 89999999999984 4499999999999999997765 344444 34689999999999
Q ss_pred CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEEeeCCC
Q 041325 317 TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 317 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~ 388 (450)
.+|++++.+ .+++|++..+..+....... ......|...+.+++|++ ++|++|+.||.|++||+.+
T Consensus 250 ~~la~~~~~-~i~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 250 YWLAAATAT-GIKVFSLDPQYLVDDLRPEF-----AGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp SEEEEEETT-EEEEEEETTEEEEEEECCCC-----TTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred CEEEEEcCC-CcEEEEeCcCeeeeccCccc-----cccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 999988755 59999998765543222111 112234667899999985 4999999999999999875
No 58
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-37 Score=284.79 Aligned_cols=243 Identities=28% Similarity=0.512 Sum_probs=200.5
Q ss_pred cceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEE
Q 041325 76 SYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRV 151 (450)
Q Consensus 76 ~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~i 151 (450)
..|++++| |+++|++|+.||.|++||+.+++.... +.+|...|.+++|+++. |++++.|++|++
T Consensus 124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~------------~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~i 191 (393)
T 1erj_A 124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMI------------LQGHEQDIYSLDYFPSGDKLVSGSGDRTVRI 191 (393)
T ss_dssp CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE------------ECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE------------EccCCCCEEEEEEcCCCCEEEEecCCCcEEE
Confidence 35999999 799999999999999999998876554 77999999999999776 999999999999
Q ss_pred EEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEEEEEeC
Q 041325 152 WKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLYSTSW 230 (450)
Q Consensus 152 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~ 230 (450)
||+++++. ...+ .+...+.+++|+| ++++|++|+.
T Consensus 192 wd~~~~~~----------------~~~~----------------------------~~~~~v~~~~~~~~~~~~l~~~s~ 227 (393)
T 1erj_A 192 WDLRTGQC----------------SLTL----------------------------SIEDGVTTVAVSPGDGKYIAAGSL 227 (393)
T ss_dssp EETTTTEE----------------EEEE----------------------------ECSSCEEEEEECSTTCCEEEEEET
T ss_pred EECCCCee----------------EEEE----------------------------EcCCCcEEEEEECCCCCEEEEEcC
Confidence 99998732 1111 2456799999999 8999999999
Q ss_pred CCcEEEEecCCCeEEEEee------cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc----ccchhhhhH
Q 041325 231 DRTFKIWRTSDFRCLESVK------NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN----KKHSLVQTL 300 (450)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~----~~~~~~~~~ 300 (450)
|+.|++||+++++.+..+. ..|...|.+++|+|++ .+|++++.||.|++||++....... ........+
T Consensus 228 d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~ 306 (393)
T 1erj_A 228 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG-QSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 306 (393)
T ss_dssp TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTS-SEEEEEETTSEEEEEEC---------------CEEEEE
T ss_pred CCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCC-CEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEE
Confidence 9999999999988877663 2688899999999854 4899999999999999976431110 011123345
Q ss_pred hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--------CeE
Q 041325 301 EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--------NLL 372 (450)
Q Consensus 301 ~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--------~~l 372 (450)
.+|...|.+++|+|++++|++|+.|+.|++||+.+++.+ ..+.+|...|.+++|.+ ++|
T Consensus 307 ~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~-------------~~l~~h~~~v~~v~~~~~~~~~p~~~~l 373 (393)
T 1erj_A 307 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL-------------LMLQGHRNSVISVAVANGSSLGPEYNVF 373 (393)
T ss_dssp ECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEE-------------EEEECCSSCEEEEEECSSCTTCTTCEEE
T ss_pred ecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEE-------------EEECCCCCCEEEEEecCCcCcCCCCCEE
Confidence 678899999999999999999999999999999988755 56778999999999874 489
Q ss_pred EEEeCCCeEEEeeCCC
Q 041325 373 FSGSSDNTIRIWRRSS 388 (450)
Q Consensus 373 ~s~~~dg~v~iwd~~~ 388 (450)
++|+.||.|++|++..
T Consensus 374 ~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 374 ATGSGDCKARIWKYKK 389 (393)
T ss_dssp EEEETTSEEEEEEEEE
T ss_pred EEECCCCcEEECcccc
Confidence 9999999999999864
No 59
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2e-37 Score=323.84 Aligned_cols=340 Identities=17% Similarity=0.265 Sum_probs=266.7
Q ss_pred cCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEE
Q 041325 55 KQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKS 132 (450)
Q Consensus 55 ~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 132 (450)
...+...+++++.++. +|...|++++| |+++|++|+.||.|+|||+.+++.... +.+|...|.+
T Consensus 639 i~vw~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~------------~~~~~~~v~~ 704 (1249)
T 3sfz_A 639 LQVFKAETGEKLLDIK--AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHT------------YDEHSEQVNC 704 (1249)
T ss_dssp EEEEETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE------------EECCSSCEEE
T ss_pred EEEEECCCCCEEEEec--cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEE------------EcCCCCcEEE
Confidence 3445556677888888 99999999999 799999999999999999999887665 6789999999
Q ss_pred EEEeCC--e--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecc------
Q 041325 133 LVVLGD--K--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHK------ 202 (450)
Q Consensus 133 l~~~~~--~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 202 (450)
++|+++ . +++|+.||.|++||+.++.......... .....+...+ ++...+....++.+.++...
T Consensus 705 ~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~---~~v~~~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~ 779 (1249)
T 3sfz_A 705 CHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT---NSVNHCRFSP--DDELLASCSADGTLRLWDVRSANERK 779 (1249)
T ss_dssp EEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCS---SCEEEEEECS--STTEEEEEESSSEEEEEEGGGTEEEE
T ss_pred EEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCC---CCEEEEEEec--CCCEEEEEECCCeEEEEeCCCCcccc
Confidence 999974 2 8899999999999999886544332211 1111222111 12222233333333332210
Q ss_pred ----------------------------------------------------e-eeeecCCCceEEEEEccCCCEEEEEe
Q 041325 203 ----------------------------------------------------K-CTWVHHVDTVSALALSSDGSLLYSTS 229 (450)
Q Consensus 203 ----------------------------------------------------~-~~~~~~~~~v~~~~~~~~~~~l~~~~ 229 (450)
. ....+|...|.+++|+|+++++++++
T Consensus 780 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~ 859 (1249)
T 3sfz_A 780 SINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIAL 859 (1249)
T ss_dssp EEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEEC
T ss_pred eecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEe
Confidence 0 11127888999999999999999999
Q ss_pred CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc-------------------
Q 041325 230 WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV------------------- 290 (450)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~------------------- 290 (450)
.||.|++||+.++..+..+. .|...|.+++|+|+ +..+++++.||.|++||+.......
T Consensus 860 ~dg~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spd-g~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 937 (1249)
T 3sfz_A 860 SQYCVELWNIDSRLKVADCR-GHLSWVHGVMFSPD-GSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMV 937 (1249)
T ss_dssp SSSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTT-SSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEE
T ss_pred CCCeEEEEEcCCCceeeecC-CCccceEEEEECCC-CCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEE
Confidence 99999999999999998888 89999999999984 4489999999999999975421000
Q ss_pred ----------------------------------------------------cccchhhhhHhhcccceEEEEEcCCCCE
Q 041325 291 ----------------------------------------------------NKKHSLVQTLEKHKSAVTALALSTDGTV 318 (450)
Q Consensus 291 ----------------------------------------------------~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 318 (450)
.........+.+|...|++++|+|++++
T Consensus 938 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~ 1017 (1249)
T 3sfz_A 938 LAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKT 1017 (1249)
T ss_dssp EEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSC
T ss_pred EEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCE
Confidence 0011123344568889999999999999
Q ss_pred EEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-eEEEEeCCCeEEEeeCCCCccccCCCc
Q 041325 319 LYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFSGSSDNTIRIWRRSSSVTDHQKGY 397 (450)
Q Consensus 319 l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~ 397 (450)
|++++.||.|++||+.+++.. ....|...|.++.+.++ .+++++.||.|++||+.++
T Consensus 1018 l~s~~~dg~i~vwd~~~~~~~--------------~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~-------- 1075 (1249)
T 3sfz_A 1018 LISSSEDSVIQVWNWQTGDYV--------------FLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITG-------- 1075 (1249)
T ss_dssp EEEECSSSBEEEEETTTTEEE--------------CCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTT--------
T ss_pred EEEEcCCCEEEEEECCCCceE--------------EEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCC--------
Confidence 999999999999999987644 35578899999999865 8999999999999999875
Q ss_pred eeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 398 SCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 398 ~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+....+.+|...|.+++|+|++. ++++++.||.|++||++
T Consensus 1076 ~~~~~~~~~~~~v~~~~~s~d~~-------------~l~s~s~d~~v~iwd~~ 1115 (1249)
T 3sfz_A 1076 RIERDFTCHQGTVLSCAISSDAT-------------KFSSTSADKTAKIWSFD 1115 (1249)
T ss_dssp CCCEEEECCSSCCCCEEECSSSS-------------SCEEECCSSCCCEECSS
T ss_pred ceeEEEcccCCcEEEEEECCCCC-------------EEEEEcCCCcEEEEECC
Confidence 56778889999999999999999 89999999999999973
No 60
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=9.2e-37 Score=271.02 Aligned_cols=290 Identities=18% Similarity=0.300 Sum_probs=225.2
Q ss_pred eeeEEeecCCCc--ceEEEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--
Q 041325 65 CSATLKVKGNSS--YIPSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-- 139 (450)
Q Consensus 65 ~~~~l~~~~h~~--~v~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 139 (450)
+.+.|...+... .+++|+| .+++||+| .|++|+|||+.+++..... .+.+|...|.+++|+++.
T Consensus 13 p~rvldap~~~~d~y~~~l~WS~~~~lAvg-~D~tV~iWd~~tg~~~~~~----------~~~~~~~~V~~v~~~~~~~~ 81 (318)
T 4ggc_A 13 PDRILDAPEIRNDYYLNLVDWSSGNVLAVA-LDNSVYLWSASSGDILQLL----------QMEQPGEYISSVAWIKEGNY 81 (318)
T ss_dssp CSEEEECTTCCCCTTCBCEEECTTSEEEEE-ETTEEEEEETTTCCEEEEE----------ECCSTTCCEEEEEECTTSSE
T ss_pred CCEEeeCCCCcccccceEEEECCCCEEEEE-eCCEEEEEECCCCCEEEEE----------EecCCCCeEEEEEECCCCCE
Confidence 334555334333 4688999 45677776 4899999999999877652 234788899999999876
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS 219 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (450)
|++|+.||+|++||+++++. + ..+.+|...+.++.+
T Consensus 82 l~sgs~Dg~v~iw~~~~~~~----------------~---------------------------~~~~~h~~~~~~~~~- 117 (318)
T 4ggc_A 82 LAVGTSSAEVQLWDVQQQKR----------------L---------------------------RNMTSHSARVGSLSW- 117 (318)
T ss_dssp EEEEETTSEEEEEETTTTEE----------------E---------------------------EEEECCSSCEEEEEE-
T ss_pred EEEEECCCcEEEeecCCcee----------------E---------------------------EEecCccceEEEeec-
Confidence 99999999999999998832 2 223367777776554
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhh
Q 041325 220 SDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQT 299 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 299 (450)
++..+++++.++.+++|+.............|...+..+.+.+. +.++++++.||.|++||+++++ ........
T Consensus 118 -~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~ 191 (318)
T 4ggc_A 118 -NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPD-GRHLASGGNDNLVNVWPSAPGE----GGWVPLQT 191 (318)
T ss_dssp -ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTT-SSEEEEEETTSCEEEEESSCBT----TBSCCSEE
T ss_pred -CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCC-CCEEEEEecCcceeEEECCCCc----ccccceee
Confidence 56799999999999999998765444333389999999999984 4489999999999999998765 22223344
Q ss_pred HhhcccceEEEEEcCCCCEE---EEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEE
Q 041325 300 LEKHKSAVTALALSTDGTVL---YSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFS 374 (450)
Q Consensus 300 ~~~~~~~i~~l~~~~~~~~l---~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s 374 (450)
...+...|.+++++|++..+ ++++.++.|++||....... ....+...+..+.+.+. .+++
T Consensus 192 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~--------------~~~~~~~~v~~~~~~~~~~~~~~ 257 (318)
T 4ggc_A 192 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACL--------------SAVDAHSQVCSILWSPHYKELIS 257 (318)
T ss_dssp ECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEE--------------EEEECSSCEEEEEEETTTTEEEE
T ss_pred ecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccc--------------ccccceeeeeeeeecccccceEE
Confidence 45677889999999976533 46778899999999876543 23346677888888743 4444
Q ss_pred --EeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 375 --GSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 375 --~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
|+.|+.|++||+.++ +++..+.+|.+.|++++|+|++. +|+|||.||+|+|||+.
T Consensus 258 ~sg~~d~~i~iwd~~~~--------~~~~~l~gH~~~V~~l~~spdg~-------------~l~S~s~D~~v~iWd~~ 314 (318)
T 4ggc_A 258 GHGFAQNQLVIWKYPTM--------AKVAELKGHTSRVLSLTMSPDGA-------------TVASAAADETLRLWRCF 314 (318)
T ss_dssp EECTTTCCEEEEETTTC--------CEEEEECCCSSCEEEEEECTTSS-------------CEEEEETTTEEEEECCS
T ss_pred EEEcCCCEEEEEECCCC--------cEEEEEcCCCCCEEEEEEcCCCC-------------EEEEEecCCeEEEEECC
Confidence 458999999999875 78889999999999999999999 89999999999999973
No 61
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=2.6e-37 Score=277.21 Aligned_cols=257 Identities=23% Similarity=0.370 Sum_probs=209.3
Q ss_pred EEecCCC-ceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEE
Q 041325 122 VATGNGD-AVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQV 198 (450)
Q Consensus 122 ~~~~h~~-~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (450)
.+.+|.. .|.+++|+|++ |++|+.|++|++||++.+.... .
T Consensus 10 ~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~--------------~---------------------- 53 (345)
T 3fm0_A 10 RVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWIC--------------K---------------------- 53 (345)
T ss_dssp EECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEE--------------E----------------------
T ss_pred eecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCccee--------------e----------------------
Confidence 3668887 99999999887 9999999999999998762110 0
Q ss_pred eecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCe--EEEEeecccccceEEEEEeecCCcEEEEEcCCC
Q 041325 199 RRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFR--CLESVKNAHDDAINAIVVSKSNDGFVYTGSADT 276 (450)
Q Consensus 199 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 276 (450)
.....+|...|.+++|+|++++|++|+.|+.|++||+..+. ++..+. +|...|.+++|+|+ ..+|++++.|+
T Consensus 54 ----~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~-~h~~~v~~v~~sp~-~~~l~s~s~D~ 127 (345)
T 3fm0_A 54 ----SVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLE-GHENEVKSVAWAPS-GNLLATCSRDK 127 (345)
T ss_dssp ----EEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEEC-CCSSCEEEEEECTT-SSEEEEEETTS
T ss_pred ----eeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEcc-CCCCCceEEEEeCC-CCEEEEEECCC
Confidence 00113699999999999999999999999999999998763 556666 89999999999994 45999999999
Q ss_pred cEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeecccc
Q 041325 277 KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALR 356 (450)
Q Consensus 277 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 356 (450)
.|++||++.+. ....+..+..|...|.+++|+|++++|++|+.|+.|++||.++++.. ....+.
T Consensus 128 ~v~iwd~~~~~-----~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~-----------~~~~~~ 191 (345)
T 3fm0_A 128 SVWVWEVDEED-----EYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWV-----------CCATLE 191 (345)
T ss_dssp CEEEEEECTTS-----CEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEE-----------EEEEEC
T ss_pred eEEEEECCCCC-----CeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEE-----------EEEEec
Confidence 99999987643 12234556778999999999999999999999999999999876532 345678
Q ss_pred CCccceEEEEEeC--CeEEEEeCCCeEEEeeCCCCcccc-------CCCceeEEEecC-CCcceEEEEEEecCCCCCCCC
Q 041325 357 GHTKAILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTDH-------QKGYSCLAVLEG-HRRPVKCLTAVVDSDYSNRNS 426 (450)
Q Consensus 357 ~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~-------~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~ 426 (450)
+|...|++++|++ ++|++|+.|++|++||........ .....++..+.+ |...|.+++|++++.
T Consensus 192 ~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~------ 265 (345)
T 3fm0_A 192 GHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTG------ 265 (345)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTC------
T ss_pred CCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCC------
Confidence 9999999999985 499999999999999974321110 112345556655 889999999999999
Q ss_pred CCCCceEEEEEcccCCcEEEEEe
Q 041325 427 DHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 427 ~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
.|++++.|+.|++|++
T Consensus 266 -------~l~s~~~d~~i~vw~~ 281 (345)
T 3fm0_A 266 -------ALATACGDDAIRVFQE 281 (345)
T ss_dssp -------CEEEEETTSCEEEEEE
T ss_pred -------EEEEEeCCCeEEEEEe
Confidence 8999999999999986
No 62
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=2.8e-38 Score=292.14 Aligned_cols=274 Identities=18% Similarity=0.208 Sum_probs=217.8
Q ss_pred eEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEE
Q 041325 78 IPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWK 153 (450)
Q Consensus 78 v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~ 153 (450)
+++++| ++++|++|+.||.|++||+.+++.... +..| ..+....|+++. |++++.||.|++||
T Consensus 59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~------------~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd 125 (420)
T 3vl1_A 59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKM------------LKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLD 125 (420)
T ss_dssp CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTT------------SCSC-CEEEEEEECSSSCEEEEEETTSCEEEEC
T ss_pred ccceeeeecCCeEEEEEcCCcEEEEEecccceeeE------------EecC-CceEEEEEecCCCEEEEEECCCCEEEEe
Confidence 446777 899999999999999999987664333 2233 334444566554 99999999999999
Q ss_pred cCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCc
Q 041325 154 IDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRT 233 (450)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 233 (450)
+.++. .... +.+|.+.|.+++|+|++++|++++.|+.
T Consensus 126 ~~~~~----------------~~~~---------------------------~~~h~~~v~~~~~~~~~~~l~s~s~d~~ 162 (420)
T 3vl1_A 126 SNFNL----------------QREI---------------------------DQAHVSEITKLKFFPSGEALISSSQDMQ 162 (420)
T ss_dssp TTSCE----------------EEEE---------------------------TTSSSSCEEEEEECTTSSEEEEEETTSE
T ss_pred CCCcc----------------eeee---------------------------cccccCccEEEEECCCCCEEEEEeCCCe
Confidence 98762 2211 2368999999999999999999999999
Q ss_pred EEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHh---h--------
Q 041325 234 FKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLE---K-------- 302 (450)
Q Consensus 234 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---~-------- 302 (450)
|++||+.+++.+..+. .|...|.+++|+|+ ..+|++++.||.|++||+++++ .+..+. .
T Consensus 163 i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~-~~~l~s~~~d~~v~iwd~~~~~--------~~~~~~~~~~~~~~v~~~ 232 (420)
T 3vl1_A 163 LKIWSVKDGSNPRTLI-GHRATVTDIAIIDR-GRNVLSASLDGTIRLWECGTGT--------TIHTFNRKENPHDGVNSI 232 (420)
T ss_dssp EEEEETTTCCCCEEEE-CCSSCEEEEEEETT-TTEEEEEETTSCEEEEETTTTE--------EEEEECBTTBTTCCEEEE
T ss_pred EEEEeCCCCcCceEEc-CCCCcEEEEEEcCC-CCEEEEEcCCCcEEEeECCCCc--------eeEEeecCCCCCCCccEE
Confidence 9999999999988887 89999999999985 4589999999999999998765 222222 1
Q ss_pred -------------cccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC
Q 041325 303 -------------HKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS 369 (450)
Q Consensus 303 -------------~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 369 (450)
+...+.+++|+|++++|++|+.||.|++||+++++.+. .....|...|.+++|++
T Consensus 233 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~------------~~~~~~~~~v~~~~~~~ 300 (420)
T 3vl1_A 233 ALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTI------------QLPSKFTCSCNSLTVDG 300 (420)
T ss_dssp EEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEE------------EECCTTSSCEEEEEECS
T ss_pred EEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeE------------EcccccCCCceeEEEeC
Confidence 23455556668899999999999999999999876542 23456888999999985
Q ss_pred C---eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecC-CCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEE
Q 041325 370 N---LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG-HRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIK 445 (450)
Q Consensus 370 ~---~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~ 445 (450)
+ +|++|+.||.|++||++++ ..++..+.+ |...|.++. .+++. +|++++.||.|+
T Consensus 301 ~~~~~l~~g~~dg~i~vwd~~~~-------~~~~~~~~~~~~~~v~~~~-~~~~~-------------~l~s~~~d~~v~ 359 (420)
T 3vl1_A 301 NNANYIYAGYENGMLAQWDLRSP-------ECPVGEFLINEGTPINNVY-FAAGA-------------LFVSSGFDTSIK 359 (420)
T ss_dssp SCTTEEEEEETTSEEEEEETTCT-------TSCSEEEEESTTSCEEEEE-EETTE-------------EEEEETTTEEEE
T ss_pred CCCCEEEEEeCCCeEEEEEcCCC-------cCchhhhhccCCCCceEEE-eCCCC-------------EEEEecCCccEE
Confidence 5 9999999999999999874 123455555 677788874 55777 899999999999
Q ss_pred EEEeC
Q 041325 446 IWQIR 450 (450)
Q Consensus 446 iw~l~ 450 (450)
+|+++
T Consensus 360 iw~~~ 364 (420)
T 3vl1_A 360 LDIIS 364 (420)
T ss_dssp EEEEC
T ss_pred EEecc
Confidence 99974
No 63
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=4.2e-38 Score=278.76 Aligned_cols=254 Identities=18% Similarity=0.264 Sum_probs=199.9
Q ss_pred EEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEe
Q 041325 122 VATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVR 199 (450)
Q Consensus 122 ~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (450)
.+.+|.+.|++++|++++ |++|+.|++|++||+.++..
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~---------------------------------------- 47 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQ---------------------------------------- 47 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEE----------------------------------------
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCc----------------------------------------
Confidence 356999999999999765 99999999999999987621
Q ss_pred ecceeeeecCCCceEEEEEcc--CCCEEEEEeCCCcEEEEecCCCe--EEEEeecccccceEEEEEeecC-CcEEEEEcC
Q 041325 200 RHKKCTWVHHVDTVSALALSS--DGSLLYSTSWDRTFKIWRTSDFR--CLESVKNAHDDAINAIVVSKSN-DGFVYTGSA 274 (450)
Q Consensus 200 ~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~ 274 (450)
.....+.+|.+.|.+++|++ ++++|++|+.|++|++||+++++ ....+. .|...|.+++|+|+. ..+|++|+.
T Consensus 48 -~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~g~~lasgs~ 125 (316)
T 3bg1_A 48 -ILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHA-GHDSSVNSVCWAPHDYGLILACGSS 125 (316)
T ss_dssp -EEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEEC-CCSSCCCEEEECCTTTCSCEEEECS
T ss_pred -EEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEcc-CCCCceEEEEECCCCCCcEEEEEcC
Confidence 01223557999999999976 48999999999999999998874 455555 789999999999863 458999999
Q ss_pred CCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCC-----------------CCEEEEeeCCCcEEEEEcCCCc
Q 041325 275 DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTD-----------------GTVLYSGACDRSILVWERDQGN 337 (450)
Q Consensus 275 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-----------------~~~l~~g~~dg~i~vwd~~~~~ 337 (450)
|+.|++||++... .......+.+|...+.+++|+|+ +++|++|+.|+.|++||++...
T Consensus 126 D~~i~lwd~~~~~-----~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~ 200 (316)
T 3bg1_A 126 DGAISLLTYTGEG-----QWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDG 200 (316)
T ss_dssp SSCEEEEEECSSS-----CEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTS
T ss_pred CCCEEEEecCCCC-----CcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCC
Confidence 9999999987542 11123455678899999999997 4789999999999999997542
Q ss_pred eeeeCCCCCCceeeeccccCCccceEEEEEeC------CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceE
Q 041325 338 YIVDGDDDSGHMVLKGALRGHTKAILCLAVVS------NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVK 411 (450)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~ 411 (450)
. ......+.+|...|.+++|++ ++|++++.||+|++|++..... .......+..|...|.
T Consensus 201 ~----------~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~----~~~~~~~~~~~~~~v~ 266 (316)
T 3bg1_A 201 Q----------WKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASS----NTWSPKLLHKFNDVVW 266 (316)
T ss_dssp C----------EEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTC----CCCBCCEEEECSSCEE
T ss_pred c----------cceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCccc----cchhhhhhhcCCCcEE
Confidence 1 113356789999999999985 4799999999999999876311 0011223456889999
Q ss_pred EEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 412 CLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+++|+|++. +|++++.||.|+||++
T Consensus 267 ~v~~sp~g~-------------~las~~~D~~v~lw~~ 291 (316)
T 3bg1_A 267 HVSWSITAN-------------ILAVSGGDNKVTLWKE 291 (316)
T ss_dssp EEEECTTTC-------------CEEEEESSSCEEEEEE
T ss_pred EEEEcCCCC-------------EEEEEcCCCeEEEEEE
Confidence 999999999 8999999999999996
No 64
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=5.8e-37 Score=307.08 Aligned_cols=287 Identities=17% Similarity=0.299 Sum_probs=244.2
Q ss_pred eeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--
Q 041325 64 QCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 139 (450)
+..+++. +|.+.|++++| ++++||+|+.||.|+|||+.+++.... +.+|...|.+++|++++
T Consensus 4 ~~~~~~~--~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~------------~~~~~~~v~~~~~s~~~~~ 69 (814)
T 3mkq_A 4 DIKKTFS--NRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRS------------IQVTETPVRAGKFIARKNW 69 (814)
T ss_dssp CCEEEEE--EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE------------EECCSSCEEEEEEEGGGTE
T ss_pred ccceeee--cCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEE------------EecCCCcEEEEEEeCCCCE
Confidence 4567777 99999999999 799999999999999999998876655 67899999999999877
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS 219 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (450)
|++++.||.|++||+.++.. ...+.+|.+.|.+++|+
T Consensus 70 l~~~~~dg~i~vw~~~~~~~-------------------------------------------~~~~~~~~~~v~~~~~s 106 (814)
T 3mkq_A 70 IIVGSDDFRIRVFNYNTGEK-------------------------------------------VVDFEAHPDYIRSIAVH 106 (814)
T ss_dssp EEEEETTSEEEEEETTTCCE-------------------------------------------EEEEECCSSCEEEEEEC
T ss_pred EEEEeCCCeEEEEECCCCcE-------------------------------------------EEEEecCCCCEEEEEEe
Confidence 99999999999999988732 22334688999999999
Q ss_pred cCCCEEEEEeCCCcEEEEecCCC-eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhh
Q 041325 220 SDGSLLYSTSWDRTFKIWRTSDF-RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQ 298 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 298 (450)
|++++|++++.||.|++||+.++ .....+. .|...|.+++|+|.+...+++++.||.|++||+..+. ...
T Consensus 107 ~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~--------~~~ 177 (814)
T 3mkq_A 107 PTKPYVLSGSDDLTVKLWNWENNWALEQTFE-GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQST--------PNF 177 (814)
T ss_dssp SSSSEEEEEETTSEEEEEEGGGTSEEEEEEE-CCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSS--------CSE
T ss_pred CCCCEEEEEcCCCEEEEEECCCCceEEEEEc-CCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCc--------cee
Confidence 99999999999999999999987 5555555 8899999999998545589999999999999997654 233
Q ss_pred hHhh-cccceEEEEEcC--CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEE
Q 041325 299 TLEK-HKSAVTALALST--DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLF 373 (450)
Q Consensus 299 ~~~~-~~~~i~~l~~~~--~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~ 373 (450)
.+.. +...+.+++|+| ++++|++|+.||.|++||+.+++.+ ..+.+|...|.+++|+++ +++
T Consensus 178 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~-------------~~~~~~~~~v~~~~~~~~~~~l~ 244 (814)
T 3mkq_A 178 TLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV-------------ATLEGHMSNVSFAVFHPTLPIII 244 (814)
T ss_dssp EEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEE-------------EEEECCSSCEEEEEECSSSSEEE
T ss_pred EEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEE-------------EEEcCCCCCEEEEEEcCCCCEEE
Confidence 3333 348899999999 9999999999999999999987654 566789999999999854 899
Q ss_pred EEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 374 SGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 374 s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+++.||.|++||+.++ +.+..+..|...+.+++|+|++.. ++++++.|+.+.+|++
T Consensus 245 ~~~~dg~v~vwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~------------~~~~~~~~~~~~~~~~ 300 (814)
T 3mkq_A 245 SGSEDGTLKIWNSSTY--------KVEKTLNVGLERSWCIATHPTGRK------------NYIASGFDNGFTVLSL 300 (814)
T ss_dssp EEETTSCEEEEETTTC--------SEEEEECCSSSSEEEEEECTTCGG------------GEEEEEETTEEEEEEC
T ss_pred EEeCCCeEEEEECCCC--------cEEEEeecCCCcEEEEEEccCCCc------------eEEEEEeCCCEEEEEc
Confidence 9999999999999874 678888899999999999999862 3455556777888875
No 65
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5.3e-38 Score=285.56 Aligned_cols=270 Identities=20% Similarity=0.306 Sum_probs=212.6
Q ss_pred cCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEE
Q 041325 55 KQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKS 132 (450)
Q Consensus 55 ~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 132 (450)
..++...+++..+++. +|...|.+++| ++++|++|+.|+.|++||+.+...... .......+.+|.+.|.+
T Consensus 90 v~iWd~~~~~~~~~~~--~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~-----~~~~~~~~~gh~~~v~~ 162 (380)
T 3iz6_a 90 LIVWNALTSQKTHAIK--LHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDG-----NMPVSRVLTGHKGYASS 162 (380)
T ss_dssp EEEEETTTTEEEEEEE--CCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCC-----SSTTCCBCCCCSSCCCC
T ss_pred EEEEECCCCccceEEe--cCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccC-----CccceeeccCCCcceEE
Confidence 3445556678888888 99999999999 899999999999999999876431110 01111236799999999
Q ss_pred EEEeCCe---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecC
Q 041325 133 LVVLGDK---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHH 209 (450)
Q Consensus 133 l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (450)
+.|.++. |++|+.|++|++||+.++... ..+.. ....+|
T Consensus 163 ~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~----------------~~~~~----------------------~~~~~h 204 (380)
T 3iz6_a 163 CQYVPDQETRLITGSGDQTCVLWDVTTGQRI----------------SIFGS----------------------EFPSGH 204 (380)
T ss_dssp CBCCSSSSSCEEEECTTSCEEEECTTTCCEE----------------EEECC----------------------CSSSSC
T ss_pred EEEecCCCCEEEEECCCCcEEEEEcCCCcEE----------------EEeec----------------------ccCCCC
Confidence 9998753 999999999999999988432 11110 001258
Q ss_pred CCceEEEEEcc-CCCEEEEEeCCCcEEEEecC-CCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchh
Q 041325 210 VDTVSALALSS-DGSLLYSTSWDRTFKIWRTS-DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAA 287 (450)
Q Consensus 210 ~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 287 (450)
...|.+++|++ ++++|++|+.|+.|++||++ ..+.+..+. +|...|.+++|+|+ ..+|++|+.||.|++||+++++
T Consensus 205 ~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~-~h~~~v~~v~~~p~-~~~l~s~s~D~~i~lwd~~~~~ 282 (380)
T 3iz6_a 205 TADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYH-GHEGDINSVKFFPD-GQRFGTGSDDGTCRLFDMRTGH 282 (380)
T ss_dssp CSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEEC-CCSSCCCEEEECTT-SSEEEEECSSSCEEEEETTTTE
T ss_pred ccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEEC-CcCCCeEEEEEecC-CCeEEEEcCCCeEEEEECCCCc
Confidence 88999999987 88999999999999999998 446666676 89999999999984 4589999999999999998765
Q ss_pred hhccccchhhhhHh-------hcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCcc
Q 041325 288 LQVNKKHSLVQTLE-------KHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK 360 (450)
Q Consensus 288 ~~~~~~~~~~~~~~-------~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (450)
.+..+. .+...|++++|+|+|++|++|+.||.|++||+..++.+. .+.....+|..
T Consensus 283 --------~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~---------~~~~~~~~h~~ 345 (380)
T 3iz6_a 283 --------QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVL---------NLGTLQNSHEG 345 (380)
T ss_dssp --------EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEE---------EECCSCSSCCC
T ss_pred --------EEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEE---------EEecccCCCCC
Confidence 222221 123458999999999999999999999999998877552 11123367999
Q ss_pred ceEEEEEeC--CeEEEEeCCCeEEEeeCCC
Q 041325 361 AILCLAVVS--NLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 361 ~v~~~~~~~--~~l~s~~~dg~v~iwd~~~ 388 (450)
.|++++|++ .+|++|+.||.|++|++..
T Consensus 346 ~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~ 375 (380)
T 3iz6_a 346 RISCLGLSSDGSALCTGSWDKNLKIWAFSG 375 (380)
T ss_dssp CCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred ceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence 999999985 4999999999999999875
No 66
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=8.7e-37 Score=270.32 Aligned_cols=276 Identities=22% Similarity=0.429 Sum_probs=224.2
Q ss_pred ccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEE
Q 041325 13 RNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYG 90 (450)
Q Consensus 13 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~t 90 (450)
.+..+.|+|+...+.+...+..+.. +....++..+.+. +|...|.+++| ++++|++
T Consensus 25 ~v~~~~~s~~~~~l~s~~~dg~i~i--------------------w~~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s 82 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSSADKLIKI--------------------WGAYDGKFEKTIS--GHKLGISDVAWSSDSNLLVS 82 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEE--------------------EETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEE
T ss_pred cEEEEEECCCCCEEEEeeCCCeEEE--------------------EeCCCcccchhhc--cCCCceEEEEEcCCCCEEEE
Confidence 5666677777776666555544433 3334456777777 99999999999 7999999
Q ss_pred eeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcc
Q 041325 91 GSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKL 168 (450)
Q Consensus 91 gs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~ 168 (450)
|+.||.|++||+.+++.... +.+|...|.+++|+++. |++++.||.|++||+++++.
T Consensus 83 ~~~d~~i~vwd~~~~~~~~~------------~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~--------- 141 (312)
T 4ery_A 83 ASDDKTLKIWDVSSGKCLKT------------LKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKC--------- 141 (312)
T ss_dssp EETTSEEEEEETTTCCEEEE------------EECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCE---------
T ss_pred ECCCCEEEEEECCCCcEEEE------------EcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEE---------
Confidence 99999999999998886655 67899999999999876 99999999999999988732
Q ss_pred cccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEe
Q 041325 169 KNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESV 248 (450)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 248 (450)
+ ..+..|...|.+++|+|++++|++++.||.|++||+++++.+..+
T Consensus 142 -------~---------------------------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~ 187 (312)
T 4ery_A 142 -------L---------------------------KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTL 187 (312)
T ss_dssp -------E---------------------------EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred -------E---------------------------EEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEE
Confidence 1 123358889999999999999999999999999999999988887
Q ss_pred ecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccce---EEEEEcCCCCEEEEeeCC
Q 041325 249 KNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAV---TALALSTDGTVLYSGACD 325 (450)
Q Consensus 249 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i---~~l~~~~~~~~l~~g~~d 325 (450)
...+...+..++|+|++ .++++++.||.|++||+++++ .+..+.+|.... ......+++++|++|+.|
T Consensus 188 ~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~d 258 (312)
T 4ery_A 188 IDDDNPPVSFVKFSPNG-KYILAATLDNTLKLWDYSKGK--------CLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 258 (312)
T ss_dssp CCSSCCCEEEEEECTTS-SEEEEEETTTEEEEEETTTTE--------EEEEECSSCCSSSCCCEEEECSSSCEEEECCTT
T ss_pred eccCCCceEEEEECCCC-CEEEEEcCCCeEEEEECCCCc--------EEEEEEecCCceEEEEEEEEeCCCcEEEEECCC
Confidence 65677889999999854 489999999999999997765 444455555432 223334688999999999
Q ss_pred CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEe--CCCeEEEeeCC
Q 041325 326 RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGS--SDNTIRIWRRS 387 (450)
Q Consensus 326 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~--~dg~v~iwd~~ 387 (450)
|.|++||+.+++.+ ..+.+|...|.+++|+++ ++++++ .|+.|++|+..
T Consensus 259 g~i~vwd~~~~~~~-------------~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 259 NLVYIWNLQTKEIV-------------QKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311 (312)
T ss_dssp SCEEEEETTTCCEE-------------EEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred CEEEEEECCCchhh-------------hhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence 99999999987754 677889999999999854 888886 69999999864
No 67
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.5e-36 Score=315.60 Aligned_cols=336 Identities=16% Similarity=0.227 Sum_probs=264.3
Q ss_pred eecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeC
Q 041325 70 KVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQ 145 (450)
Q Consensus 70 ~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~ 145 (450)
.+.+|.+.|++++| |+++|++|+.||.|++||+.+++.... +.+|.+.|.+++|++++ |++++.
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~------------~~~h~~~v~~~~~s~~~~~l~s~~~ 677 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLD------------IKAHEDEVLCCAFSSDDSYIATCSA 677 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE------------ECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEE------------eccCCCCEEEEEEecCCCEEEEEeC
Confidence 33499999999999 899999999999999999999886665 67899999999999876 999999
Q ss_pred CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecc----eeeeecCCCceEEEEEccC
Q 041325 146 DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHK----KCTWVHHVDTVSALALSSD 221 (450)
Q Consensus 146 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~ 221 (450)
||+|++||+.+++........ .....++...+..+....+....++.+.++... ...+.+|.+.|.+++|+|+
T Consensus 678 d~~v~vwd~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~ 754 (1249)
T 3sfz_A 678 DKKVKIWDSATGKLVHTYDEH---SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPD 754 (1249)
T ss_dssp TSEEEEEETTTCCEEEEEECC---SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSS
T ss_pred CCeEEEEECCCCceEEEEcCC---CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecC
Confidence 999999999998765444322 223344444454455566666777778877543 3456789999999999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCeEEEEee----------------------------------------------------
Q 041325 222 GSLLYSTSWDRTFKIWRTSDFRCLESVK---------------------------------------------------- 249 (450)
Q Consensus 222 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~---------------------------------------------------- 249 (450)
++++++++.||.|++||+.+++....+.
T Consensus 755 ~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~ 834 (1249)
T 3sfz_A 755 DELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAE 834 (1249)
T ss_dssp TTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEE
T ss_pred CCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeE
Confidence 9999999999999999998765544331
Q ss_pred --cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCc
Q 041325 250 --NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRS 327 (450)
Q Consensus 250 --~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~ 327 (450)
..|...+.+++|+|+ +.++++++.||.|++||+.++. ....+.+|...|.+++|+|++++|++++.||.
T Consensus 835 ~~~~~~~~v~~~~~sp~-~~~l~~~~~dg~v~vwd~~~~~--------~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~ 905 (1249)
T 3sfz_A 835 IHTGHHSTIQYCDFSPY-DHLAVIALSQYCVELWNIDSRL--------KVADCRGHLSWVHGVMFSPDGSSFLTASDDQT 905 (1249)
T ss_dssp EECSSSSCCCEEEECSS-TTEEEEECSSSCEEEEETTTTE--------EEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred EcCCCCCceEEEEEcCC-CCEEEEEeCCCeEEEEEcCCCc--------eeeecCCCccceEEEEECCCCCEEEEEeCCCe
Confidence 256678899999984 4589999999999999997765 56667789999999999999999999999999
Q ss_pred EEEEEcCCCceeeeCC----------C---------CCCceeee-----ccccCCccceEEEEEeC--CeEEEEeCCCeE
Q 041325 328 ILVWERDQGNYIVDGD----------D---------DSGHMVLK-----GALRGHTKAILCLAVVS--NLLFSGSSDNTI 381 (450)
Q Consensus 328 i~vwd~~~~~~~~~~~----------~---------~~~~~~~~-----~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v 381 (450)
|++||+.+........ . ........ .....+...+.++++++ +++++|+.||.|
T Consensus 906 v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i 985 (1249)
T 3sfz_A 906 IRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAI 985 (1249)
T ss_dssp EEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCC
T ss_pred EEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCE
Confidence 9999976421110000 0 00000000 00112345688899984 599999999999
Q ss_pred EEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 382 RIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 382 ~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
++||+.++ .....+.+|...|++++|+|+++ +|++++.||.|++||++
T Consensus 986 ~i~d~~~~--------~~~~~~~~h~~~v~~l~~s~dg~-------------~l~s~~~dg~i~vwd~~ 1033 (1249)
T 3sfz_A 986 KIIELPNN--------RVFSSGVGHKKAVRHIQFTADGK-------------TLISSSEDSVIQVWNWQ 1033 (1249)
T ss_dssp EEEETTTT--------SCEEECCCCSSCCCCEEECSSSS-------------CEEEECSSSBEEEEETT
T ss_pred EEEEcCCC--------ceeeecccCCCceEEEEECCCCC-------------EEEEEcCCCEEEEEECC
Confidence 99999874 56778889999999999999999 89999999999999963
No 68
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.3e-36 Score=271.08 Aligned_cols=295 Identities=19% Similarity=0.293 Sum_probs=219.0
Q ss_pred ccCCCcc-----CC-CCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--e
Q 041325 13 RNKEPKF-----QP-SSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--A 84 (450)
Q Consensus 13 ~~~~~~~-----~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d 84 (450)
.+..+.| +| ++..+.+.+.+..++.-.... .......+.+...+. +|...|.+++| +
T Consensus 23 ~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~-------------~~~~~~~~~~~~~l~--~h~~~V~~~~~~~~ 87 (343)
T 2xzm_R 23 WVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYE-------------EEQNGYFGIPHKALT--GHNHFVSDLALSQE 87 (343)
T ss_dssp CEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECS-------------SCCSSBSEEEEEEEC--CCSSCEEEEEECSS
T ss_pred hhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCc-------------CCcccccccccchhc--cCCCceEEEEECCC
Confidence 4556666 44 666777777776665411000 000112345667777 99999999999 7
Q ss_pred CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEE
Q 041325 85 GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYY 162 (450)
Q Consensus 85 ~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~ 162 (450)
+.+|++|+.||+|++||+.+++.... +.+|...|.+++|+|+. |++++.|++|++||+.....
T Consensus 88 ~~~l~s~s~D~~v~lwd~~~~~~~~~------------~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~--- 152 (343)
T 2xzm_R 88 NCFAISSSWDKTLRLWDLRTGTTYKR------------FVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECK--- 152 (343)
T ss_dssp TTEEEEEETTSEEEEEETTSSCEEEE------------EECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEE---
T ss_pred CCEEEEEcCCCcEEEEECCCCcEEEE------------EcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCce---
Confidence 99999999999999999998876655 77999999999999876 99999999999999974311
Q ss_pred eccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCC----------CEEEEEeCCC
Q 041325 163 STSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDG----------SLLYSTSWDR 232 (450)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~----------~~l~~~~~dg 232 (450)
.. .. ....|...|.+++|+|++ .++++++.|+
T Consensus 153 -------------~~-~~------------------------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~ 194 (343)
T 2xzm_R 153 -------------FS-SA------------------------EKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDG 194 (343)
T ss_dssp -------------EE-CC------------------------TTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTS
T ss_pred -------------ee-ee------------------------cccCCCceeeeeeeccccccccccCCCCCEEEEEcCCC
Confidence 00 00 011478899999999976 7899999999
Q ss_pred cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEE
Q 041325 233 TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALAL 312 (450)
Q Consensus 233 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 312 (450)
.|++||. ..+....+. .|...|.+++|+|+ ..+|++|+.||.|++||++.... ....+ .+...|.+++|
T Consensus 195 ~i~iwd~-~~~~~~~~~-~h~~~v~~~~~s~~-g~~l~sgs~dg~v~iwd~~~~~~-------~~~~~-~~~~~v~~v~~ 263 (343)
T 2xzm_R 195 RLKVWNT-NFQIRYTFK-AHESNVNHLSISPN-GKYIATGGKDKKLLIWDILNLTY-------PQREF-DAGSTINQIAF 263 (343)
T ss_dssp EEEEEET-TTEEEEEEE-CCSSCEEEEEECTT-SSEEEEEETTCEEEEEESSCCSS-------CSEEE-ECSSCEEEEEE
T ss_pred EEEEEcC-CCceeEEEc-CccccceEEEECCC-CCEEEEEcCCCeEEEEECCCCcc-------cceee-cCCCcEEEEEE
Confidence 9999994 466666676 79999999999984 44899999999999999854321 11122 24567999999
Q ss_pred cCCCCEEEEeeCCCcEEEEEcCCCceee--eCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEEeeCCC
Q 041325 313 STDGTVLYSGACDRSILVWERDQGNYIV--DGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 313 ~~~~~~l~~g~~dg~i~vwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~ 388 (450)
+|++++++++ .|+.|++||+.+++... .+.... ........+|...|.+++|++ ++|++|+.||.|++|++++
T Consensus 264 sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 264 NPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEP--ITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp CSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCS--GGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred CCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCc--chhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 9999887755 57889999998765431 111110 011122347888999999985 5999999999999999875
Q ss_pred C
Q 041325 389 S 389 (450)
Q Consensus 389 ~ 389 (450)
+
T Consensus 341 g 341 (343)
T 2xzm_R 341 S 341 (343)
T ss_dssp E
T ss_pred c
Confidence 3
No 69
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1.1e-36 Score=272.67 Aligned_cols=281 Identities=16% Similarity=0.260 Sum_probs=229.3
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCe
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHK 148 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~ 148 (450)
-|...|.+++| ||++++++..++.+.+|......... ...+|...|.+++|+++. +++++ ||.
T Consensus 7 ~~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~h~~~v~~~~~~~~~~~l~~~~-dg~ 73 (337)
T 1gxr_A 7 MGSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQI------------NTLNHGEVVCAVTISNPTRHVYTGG-KGC 73 (337)
T ss_dssp EEEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEE------------EEECCSSCCCEEEECSSSSEEEEEC-BSE
T ss_pred ccCCceeEEEECCCCCEEEeecCCCcEeccccCCccccc------------eeccCCCceEEEEEecCCcEEEEcC-CCe
Confidence 45678999999 89999999888887777654432221 245899999999999877 77777 999
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST 228 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 228 (450)
|++||+..+... ..+ .......|...|.+++|+|++++++++
T Consensus 74 i~iw~~~~~~~~-------------~~~-------------------------~~~~~~~~~~~v~~~~~~~~~~~l~~~ 115 (337)
T 1gxr_A 74 VKVWDISHPGNK-------------SPV-------------------------SQLDCLNRDNYIRSCKLLPDGCTLIVG 115 (337)
T ss_dssp EEEEETTSTTCC-------------SCS-------------------------EEEECSCTTSBEEEEEECTTSSEEEEE
T ss_pred EEEEECCCCCce-------------eee-------------------------ecccccCCCCcEEEEEEcCCCCEEEEE
Confidence 999999876310 000 000111588899999999999999999
Q ss_pred eCCCcEEEEecCCCe--EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccc
Q 041325 229 SWDRTFKIWRTSDFR--CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSA 306 (450)
Q Consensus 229 ~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 306 (450)
+.||.|++||+.+++ ....+. .|...+.+++|+|+ ..++++++.||.|++||+++++ ....+..|...
T Consensus 116 ~~d~~i~~~d~~~~~~~~~~~~~-~~~~~i~~~~~~~~-~~~l~~~~~dg~v~~~d~~~~~--------~~~~~~~~~~~ 185 (337)
T 1gxr_A 116 GEASTLSIWDLAAPTPRIKAELT-SSAPACYALAISPD-SKVCFSCCSDGNIAVWDLHNQT--------LVRQFQGHTDG 185 (337)
T ss_dssp ESSSEEEEEECCCC--EEEEEEE-CSSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTE--------EEEEECCCSSC
T ss_pred cCCCcEEEEECCCCCcceeeecc-cCCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCCCc--------eeeeeecccCc
Confidence 999999999999877 445555 78889999999984 4589999999999999997765 55666778999
Q ss_pred eEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEEe
Q 041325 307 VTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRIW 384 (450)
Q Consensus 307 i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iw 384 (450)
+.+++|+|++++|++++.||.|++||+++++.+. . ..+...+.+++|++ +++++++.||.|++|
T Consensus 186 i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~-------------~-~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~ 251 (337)
T 1gxr_A 186 ASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQ-------------Q-HDFTSQIFSLGYCPTGEWLAVGMESSNVEVL 251 (337)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE-------------E-EECSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred eEEEEECCCCCEEEEEecCCcEEEEECCCCceEe-------------e-ecCCCceEEEEECCCCCEEEEEcCCCcEEEE
Confidence 9999999999999999999999999999877552 1 23677899999984 499999999999999
Q ss_pred eCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 385 RRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 385 d~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
|+.++ ....+..|...|.+++|+|+++ +|++++.||.|++||++
T Consensus 252 ~~~~~---------~~~~~~~~~~~v~~~~~~~~~~-------------~l~~~~~dg~i~~~~~~ 295 (337)
T 1gxr_A 252 HVNKP---------DKYQLHLHESCVLSLKFAYCGK-------------WFVSTGKDNLLNAWRTP 295 (337)
T ss_dssp ETTSS---------CEEEECCCSSCEEEEEECTTSS-------------EEEEEETTSEEEEEETT
T ss_pred ECCCC---------CeEEEcCCccceeEEEECCCCC-------------EEEEecCCCcEEEEECC
Confidence 99874 2346778999999999999999 99999999999999974
No 70
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=1.9e-37 Score=274.52 Aligned_cols=251 Identities=20% Similarity=0.271 Sum_probs=195.9
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC----CeEEEEeCC
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG----DKLFSAHQD 146 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~~~d 146 (450)
+|.+.|++++| +|++||+|+.|++|+|||+.++..... ..+.+|.+.|.+++|++ +.|++|+.|
T Consensus 11 ~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~----------~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D 80 (316)
T 3bg1_A 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILI----------ADLRGHEGPVWQVAWAHPMYGNILASCSYD 80 (316)
T ss_dssp ---CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEE----------EEEECCSSCEEEEEECCGGGSSCEEEEETT
T ss_pred cccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEE----------EEEcCCCccEEEEEeCCCCCCCEEEEEECC
Confidence 99999999999 799999999999999999877642211 23679999999999974 339999999
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC--CCE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD--GSL 224 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~ 224 (450)
++|++||++++.. .....+.+|...|.+++|+|+ +.+
T Consensus 81 ~~v~iWd~~~~~~-----------------------------------------~~~~~~~~h~~~V~~v~~~p~~~g~~ 119 (316)
T 3bg1_A 81 RKVIIWREENGTW-----------------------------------------EKSHEHAGHDSSVNSVCWAPHDYGLI 119 (316)
T ss_dssp SCEEEECCSSSCC-----------------------------------------CEEEEECCCSSCCCEEEECCTTTCSC
T ss_pred CEEEEEECCCCcc-----------------------------------------eEEEEccCCCCceEEEEECCCCCCcE
Confidence 9999999986521 011223468999999999997 789
Q ss_pred EEEEeCCCcEEEEecCCCeEE--EEeecccccceEEEEEeecC----------------CcEEEEEcCCCcEEEEeCcch
Q 041325 225 LYSTSWDRTFKIWRTSDFRCL--ESVKNAHDDAINAIVVSKSN----------------DGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 225 l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~----------------~~~l~~~~~dg~i~vwd~~~~ 286 (450)
|++|+.|+.|++||+..+... ......|...|.+++|+|.. ..+|++|+.|+.|++||++..
T Consensus 120 lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~ 199 (316)
T 3bg1_A 120 LACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEED 199 (316)
T ss_dssp EEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTT
T ss_pred EEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCC
Confidence 999999999999999876322 22223788899999999852 247999999999999998643
Q ss_pred hhhccccchhhhhHhhcccceEEEEEcCCC----CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccce
Q 041325 287 ALQVNKKHSLVQTLEKHKSAVTALALSTDG----TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI 362 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~----~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 362 (450)
. .......+.+|...|.+++|+|++ ++|++|+.||+|++|++.+.... . .....+..|...|
T Consensus 200 ~-----~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~~~~~------~---~~~~~~~~~~~~v 265 (316)
T 3bg1_A 200 G-----QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASSN------T---WSPKLLHKFNDVV 265 (316)
T ss_dssp S-----CEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSSTTCC------C---CBCCEEEECSSCE
T ss_pred C-----ccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccCcccc------c---hhhhhhhcCCCcE
Confidence 1 112455677899999999999986 89999999999999999863110 0 0112345678899
Q ss_pred EEEEEeC--CeEEEEeCCCeEEEeeCCC
Q 041325 363 LCLAVVS--NLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 363 ~~~~~~~--~~l~s~~~dg~v~iwd~~~ 388 (450)
.+++|++ ++|++++.||.|++|+...
T Consensus 266 ~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 266 WHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp EEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred EEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 9999985 4999999999999999763
No 71
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=3.7e-36 Score=280.22 Aligned_cols=339 Identities=14% Similarity=0.196 Sum_probs=222.9
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCC------------CceEEEEEeCC
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNG------------DAVKSLVVLGD 138 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~v~~l~~~~~ 138 (450)
.|.+.|++++| +|++||+|+.||.|+|||+.+++.... ...........+.+|. ..|.+++|+++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~-~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~ 104 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQS-HSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQ 104 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----C-CCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCc-ccccceeEecccccccccccccccccccCceEEEEEcCC
Confidence 46899999999 799999999999999999987662110 0000111123467888 88999999976
Q ss_pred e----EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceee-eecCCCce
Q 041325 139 K----LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCT-WVHHVDTV 213 (450)
Q Consensus 139 ~----l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v 213 (450)
. |++++.||+|++||+.................... ................. .......... ..+|...|
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~h~~~v 180 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYR---DPTTVTTLRVPVFRPMD-LMVEASPRRIFANAHTYHI 180 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC-----------CCCCCSCCCCEEEEEE-EEEEEEEEEEECSCCSSCC
T ss_pred CCcceEEEeCCCCeEEEEecccccCCcceecccCcccccc---CcccccceEeccccchh-eeeeccceEEeccCCCcce
Confidence 3 99999999999999987543211000000000000 00000000000000000 1111122222 35799999
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEecCC-CeEEEEe------ecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcch
Q 041325 214 SALALSSDGSLLYSTSWDRTFKIWRTSD-FRCLESV------KNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 214 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~------~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 286 (450)
.+++|+|++++|++| .|+.|++||+++ ++.+..+ ...|...|.+++|+|++..+|++|+.||.|++||++++
T Consensus 181 ~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~ 259 (447)
T 3dw8_B 181 NSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRAS 259 (447)
T ss_dssp CEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTC
T ss_pred EEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCC
Confidence 999999999999998 799999999984 4444432 22688899999999966469999999999999999876
Q ss_pred hhhccccchhhhhHhh------------cccceEEEEEcCCCCEEEEeeCCCcEEEEEcCC-CceeeeCCCCCCceeeec
Q 041325 287 ALQVNKKHSLVQTLEK------------HKSAVTALALSTDGTVLYSGACDRSILVWERDQ-GNYIVDGDDDSGHMVLKG 353 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~------------~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~ 353 (450)
+.. ......+.. |...|.+++|+|++++|++++. +.|++||+++ ++.+ .
T Consensus 260 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~-------------~ 321 (447)
T 3dw8_B 260 ALC----DRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPV-------------E 321 (447)
T ss_dssp SSS----CTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCS-------------C
T ss_pred ccc----cceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCcccc-------------c
Confidence 620 001233333 4459999999999999999998 9999999986 5533 3
Q ss_pred cccCCccc---------------eEEEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCC--------------------
Q 041325 354 ALRGHTKA---------------ILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKG-------------------- 396 (450)
Q Consensus 354 ~~~~~~~~---------------v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~-------------------- 396 (450)
.+.+|... +..++|++ ++|++|+.||.|++||+.++.......
T Consensus 322 ~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 401 (447)
T 3dw8_B 322 TYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASG 401 (447)
T ss_dssp CEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSS
T ss_pred eeeccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccC
Confidence 34444321 23477774 599999999999999998752210000
Q ss_pred ----ceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 397 ----YSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 397 ----~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
.........+...|..++|+|++. +|++++.++ +++|.-
T Consensus 402 ~~~~~~~~~~~~~~~~~i~~~~~~p~~~-------------~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 402 KRKKDEISVDSLDFNKKILHTAWHPKEN-------------IIAVATTNN-LYIFQD 444 (447)
T ss_dssp CCCTTCEEGGGCCTTSCCCEEEECSSSS-------------EEEEECSSC-EEEEEC
T ss_pred CcccccccccccccCCceeEEEECCCCC-------------EEEEEecce-eeeecc
Confidence 000000113456789999999999 899998886 788864
No 72
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-36 Score=300.17 Aligned_cols=394 Identities=9% Similarity=0.058 Sum_probs=253.8
Q ss_pred ccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceee-----------eEEeecCCCcceEEE
Q 041325 13 RNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCS-----------ATLKVKGNSSYIPSL 81 (450)
Q Consensus 13 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~l~~~~h~~~v~~~ 81 (450)
.+..+.|+|+...+.+...+..+..- .....++. ..++ +|.+.|+++
T Consensus 100 ~V~~v~~sp~g~~l~sgs~dg~V~lw--------------------d~~~~~~~~~~i~~~~~~~~~~~--~h~~~V~sl 157 (902)
T 2oaj_A 100 KITSIDTDASLDWMLIGLQNGSMIVY--------------------DIDRDQLSSFKLDNLQKSSFFPA--ARLSPIVSI 157 (902)
T ss_dssp CEEEEECCTTCSEEEEEETTSCEEEE--------------------ETTTTEEEEEEECCHHHHHTCSS--SCCCCCCEE
T ss_pred CEEEEEECCCCCEEEEEcCCCcEEEE--------------------ECCCCccccceeccccccccccc--cCCCCeEEE
Confidence 46667777877777776666655441 11111111 1223 899999999
Q ss_pred EEe---CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcc------eeEEecCCCceEEEEEeCCe--EEEEeCCCeEE
Q 041325 82 AIA---GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHA------NVVATGNGDAVKSLVVLGDK--LFSAHQDHKIR 150 (450)
Q Consensus 82 ~~d---~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~------~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~ 150 (450)
+|+ +..|++|+.||.| +||+.+++............. .....+|...|.+++|+|++ |++++.||+|+
T Consensus 158 ~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~ 236 (902)
T 2oaj_A 158 QWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLV 236 (902)
T ss_dssp EEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEE
T ss_pred EEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEE
Confidence 993 4789999999999 999999876655322100000 00113456889999999887 99999999999
Q ss_pred EEEcCCCceeEEeccC----cc-----------cccceeeeeeccC--CCc-ceeEeeecC-----ceEEEeec------
Q 041325 151 VWKIDNNTSAYYSTSG----KL-----------KNKYYERIATLPT--LND-RFTKCFLAN-----NYVQVRRH------ 201 (450)
Q Consensus 151 iw~~~~~~~~~~~~~~----~~-----------~~~~~~~~~~~~~--~~~-~~~~~~~~~-----~~~~~~~~------ 201 (450)
+||+++++........ .. .......+...+. .++ .+......+ ..+.+...
T Consensus 237 lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~ 316 (902)
T 2oaj_A 237 FWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRY 316 (902)
T ss_dssp EEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCG
T ss_pred EEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCc
Confidence 9999988664421110 00 0112223322221 111 222222111 12222220
Q ss_pred ----------------ceeeee-cCCCceEEEEEcc----------CCCEEEEEeCCCcEEEEecCCCeEEEE-------
Q 041325 202 ----------------KKCTWV-HHVDTVSALALSS----------DGSLLYSTSWDRTFKIWRTSDFRCLES------- 247 (450)
Q Consensus 202 ----------------~~~~~~-~~~~~v~~~~~~~----------~~~~l~~~~~dg~i~iwd~~~~~~~~~------- 247 (450)
....+. .+.+.|.++.+.+ +...+++++.||.|++||+.++.....
T Consensus 317 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~ 396 (902)
T 2oaj_A 317 SITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQN 396 (902)
T ss_dssp GGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGG
T ss_pred cccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCc
Confidence 011221 4567888888765 344788899999999999987754332
Q ss_pred eecccccceEEEEE----------------------------------eecCCcEEEEEcCCCcEEEEeCcchhhhcccc
Q 041325 248 VKNAHDDAINAIVV----------------------------------SKSNDGFVYTGSADTKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 248 ~~~~~~~~v~~~~~----------------------------------~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 293 (450)
+. .|...|+++++ +| ...+|++|+.|++|++||+..+.......
T Consensus 397 l~-~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~sp-dg~~laSgs~DgtVrlWd~~~g~~~~~~~ 474 (902)
T 2oaj_A 397 LS-WLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAE-YGTAFITGHSNGSVRIYDASHGDIQDNAS 474 (902)
T ss_dssp GT-TBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCS-EEEEEEEEETTSEEEEEESSCCTTTTTBC
T ss_pred cc-ccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccc-cCcEEEEecCCCcEEEEECCCccccCCce
Confidence 11 23344555544 44 34489999999999999998764210000
Q ss_pred chh--h-hhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeee-----------------CCCC--------
Q 041325 294 HSL--V-QTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVD-----------------GDDD-------- 345 (450)
Q Consensus 294 ~~~--~-~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~-----------------~~~~-------- 345 (450)
... . ....+|...|++++|+||+++|++|+.||+|++||+.+++.... ....
T Consensus 475 ~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 554 (902)
T 2oaj_A 475 FEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVR 554 (902)
T ss_dssp EEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECG
T ss_pred EEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCcccccccc
Confidence 000 0 00126888999999999999999999999999999987642100 0000
Q ss_pred -------CCceeeeccccCCccceEEEEEeCC-eEEEEeCCCeEEEeeCCCCccccCCCceeEE-----Eec-CCCcceE
Q 041325 346 -------SGHMVLKGALRGHTKAILCLAVVSN-LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLA-----VLE-GHRRPVK 411 (450)
Q Consensus 346 -------~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~-----~~~-~h~~~v~ 411 (450)
.....+...+.+|.+.|++++|+++ +||+|+.|++|++||++.. ..+. .+. +|...|+
T Consensus 555 ~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG~lAsgs~D~tv~lwd~~~~--------~~~~~~~~~~~~~gh~~~V~ 626 (902)
T 2oaj_A 555 DRAPTGVRQGFMPSTAVHANKGKTSAINNSNIGFVGIAYAAGSLMLIDRRGP--------AIIYMENIREISGAQSACVT 626 (902)
T ss_dssp GGCCTTCSEEEEEEEEECCCSCSEEEEEECBTSEEEEEETTSEEEEEETTTT--------EEEEEEEGGGTCSSCCCCEE
T ss_pred ccCCCCCCCccceeEEEEcCCCcEEEEEecCCcEEEEEeCCCcEEEEECCCC--------eEEEEeehhHhccccccceE
Confidence 0001234567789999999999844 9999999999999998763 2222 233 8999999
Q ss_pred EEEEE-----ecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 412 CLTAV-----VDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 412 ~l~~~-----~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+|+|+ ||+. ++.+|++|+.||+|++||+
T Consensus 627 sv~Fs~~~~~~Dg~----------~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 627 CIEFVIMEYGDDGY----------SSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp EEEEEEEECTTSSS----------EEEEEEEEETTSEEEEEEE
T ss_pred EEEEEEEecCCCCC----------cceEEEEEecCCcEEEEEE
Confidence 99999 7751 1239999999999999997
No 73
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-36 Score=302.41 Aligned_cols=211 Identities=13% Similarity=0.147 Sum_probs=168.2
Q ss_pred cCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCe
Q 041325 72 KGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHK 148 (450)
Q Consensus 72 ~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~ 148 (450)
.||...|++++| ++++||+|+.||.|+||+..+.+... ...|...|.+++|+++. |++++.|++
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~-------------~~~~~~~V~~l~fspg~~L~S~s~D~~ 80 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI-------------KLEDRSAIKEMRFVKGIYLVVINAKDT 80 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE-------------ECSSCCCEEEEEEETTTEEEEEETTCE
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE-------------EcCCCCCEEEEEEcCCCEEEEEECcCe
Confidence 499999999999 79999999999999999987655332 23577899999999865 999999999
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST 228 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 228 (450)
|++||+++++. +..+ .|.+.|++++|+|+++++++|
T Consensus 81 v~lWd~~~~~~----------------~~~~----------------------------~~~~~V~~v~~sp~g~~l~sg 116 (902)
T 2oaj_A 81 VYVLSLYSQKV----------------LTTV----------------------------FVPGKITSIDTDASLDWMLIG 116 (902)
T ss_dssp EEEEETTTCSE----------------EEEE----------------------------ECSSCEEEEECCTTCSEEEEE
T ss_pred EEEEECCCCcE----------------EEEE----------------------------cCCCCEEEEEECCCCCEEEEE
Confidence 99999998732 1111 255689999999999999999
Q ss_pred eCCCcEEEEecCCCeEEEE----------eecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccch---
Q 041325 229 SWDRTFKIWRTSDFRCLES----------VKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHS--- 295 (450)
Q Consensus 229 ~~dg~i~iwd~~~~~~~~~----------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~--- 295 (450)
+.||.|++||+++++.... ....|...|.+++|+|.+.+.+++|+.||.| +||+++++........
T Consensus 117 s~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~ 195 (902)
T 2oaj_A 117 LQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPP 195 (902)
T ss_dssp ETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCT
T ss_pred cCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCC
Confidence 9999999999998876411 1126888999999998655689999999999 9999876521100000
Q ss_pred --h-----hhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceee
Q 041325 296 --L-----VQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIV 340 (450)
Q Consensus 296 --~-----~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~ 340 (450)
. ......|...|++++|+|+|++|++|+.||.|++||+++++.+.
T Consensus 196 g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~ 247 (902)
T 2oaj_A 196 FAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM 247 (902)
T ss_dssp TCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred cCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence 0 00112346789999999999999999999999999999887754
No 74
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=100.00 E-value=1e-36 Score=274.23 Aligned_cols=300 Identities=12% Similarity=0.148 Sum_probs=214.7
Q ss_pred eEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC----CeE
Q 041325 67 ATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG----DKL 140 (450)
Q Consensus 67 ~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~----~~l 140 (450)
+.+. +|.+.|++++| ++++|++|+.||.|++||+.++..... ....+.+|...|.+++|++ +.|
T Consensus 5 ~~~~--gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~--------~~~~~~~~~~~v~~~~~~~~~d~~~l 74 (351)
T 3f3f_A 5 PFDS--GHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWE--------LSDSWRAHDSSIVAIDWASPEYGRII 74 (351)
T ss_dssp CEEC--CCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEE--------EEEEEECCSSCEEEEEECCGGGCSEE
T ss_pred ccCc--ccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcce--------ecceeccCCCcEEEEEEcCCCCCCEE
Confidence 4455 99999999999 799999999999999999987642211 1123678999999999987 239
Q ss_pred EEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc
Q 041325 141 FSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS 220 (450)
Q Consensus 141 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 220 (450)
++++.||.|++||++.+.... ..... .....+..|...|.+++|+|
T Consensus 75 ~s~~~dg~v~vwd~~~~~~~~-------~~~~~---------------------------~~~~~~~~~~~~v~~~~~~~ 120 (351)
T 3f3f_A 75 ASASYDKTVKLWEEDPDQEEC-------SGRRW---------------------------NKLCTLNDSKGSLYSVKFAP 120 (351)
T ss_dssp EEEETTSCEEEEEECTTSCTT-------SSCSE---------------------------EEEEEECCCSSCEEEEEECC
T ss_pred EEEcCCCeEEEEecCCCcccc-------cccCc---------------------------ceeeeecccCCceeEEEEcC
Confidence 999999999999998763100 00000 11223446889999999999
Q ss_pred C--CCEEEEEeCCCcEEEEecCCCeEEEEee------------cccccceEEEEEeec--CCcEEEEEcCCCcEEEEeCc
Q 041325 221 D--GSLLYSTSWDRTFKIWRTSDFRCLESVK------------NAHDDAINAIVVSKS--NDGFVYTGSADTKIKVWKKL 284 (450)
Q Consensus 221 ~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~------------~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~vwd~~ 284 (450)
+ ++++++++.||.|++||+++++.+..+. ..+...+.+++|+|. ...++++++.++.+.+|+..
T Consensus 121 ~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~ 200 (351)
T 3f3f_A 121 AHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGK 200 (351)
T ss_dssp GGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECT
T ss_pred CCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccC
Confidence 9 9999999999999999998876544332 156788999999985 35689999999999888765
Q ss_pred chhhhccccchhhhhHhhcccceEEEEEcCCC----CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCcc
Q 041325 285 RAALQVNKKHSLVQTLEKHKSAVTALALSTDG----TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK 360 (450)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~----~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (450)
.++ ......+.+|...|++++|+|++ ++|++|+.||.|++||++.+.... ....+..
T Consensus 201 ~~~------~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-------------~~~~~~~ 261 (351)
T 3f3f_A 201 DGK------LHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPL-------------ASEESLT 261 (351)
T ss_dssp TSC------EEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC-----------------------
T ss_pred CCc------eeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCcc-------------ccCCccc
Confidence 543 12355667799999999999998 899999999999999998764331 1111111
Q ss_pred ceEEEEEe------CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEE
Q 041325 361 AILCLAVV------SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFL 434 (450)
Q Consensus 361 ~v~~~~~~------~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~ 434 (450)
.+...... ......+.....+.+|+... .+.+..+.+|...|++++|+|+++ +
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~h~~~v~~~~~s~~~~-------------~ 320 (351)
T 3f3f_A 262 NSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ--------VELLSEHDDHNGEVWSVSWNLTGT-------------I 320 (351)
T ss_dssp -----------------------------CCSEE--------EEEEEEECTTSSCEEEEEECSSSC-------------C
T ss_pred ceeccCCCcccccccccccccccceeeeeccccc--------ccEEEEEecccccEEEEEEcCCCC-------------E
Confidence 11111111 11223333445566666554 478888999999999999999999 8
Q ss_pred EEEcccCCcEEEEEeC
Q 041325 435 VYSGSLDCEIKIWQIR 450 (450)
Q Consensus 435 l~s~~~Dg~i~iw~l~ 450 (450)
|++|+.||.|++|+++
T Consensus 321 l~s~~~dg~v~iw~~~ 336 (351)
T 3f3f_A 321 LSSAGDDGKVRLWKAT 336 (351)
T ss_dssp EEEEETTSCEEEEEEC
T ss_pred EEEecCCCcEEEEecC
Confidence 9999999999999974
No 75
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.4e-35 Score=276.06 Aligned_cols=315 Identities=21% Similarity=0.316 Sum_probs=238.9
Q ss_pred CccccCCCCCccceeeeEEeecCCCcceEEEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCc
Q 041325 51 SSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDA 129 (450)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 129 (450)
.......+...+++++.++. +|.+.|++++| .+.+|++|+.||+|++||+.+++.... +.+|...
T Consensus 140 ~dg~i~vwd~~~~~~~~~~~--~h~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~------------~~~h~~~ 205 (464)
T 3v7d_B 140 DDKMIRVYDSINKKFLLQLS--GHDGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHV------------FEGHNST 205 (464)
T ss_dssp TTSCEEEEETTTTEEEEEEC--CCSSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEE------------ECCCSSC
T ss_pred CCCcEEEEECCCCcEEEEEe--CCCcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEE------------ECCCCCc
Confidence 33455667777888999998 99999999999 455999999999999999998876655 6789999
Q ss_pred eEEEEEe--CCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceee
Q 041325 130 VKSLVVL--GDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCT 205 (450)
Q Consensus 130 v~~l~~~--~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (450)
|.+++|. ++. +++++.||+|++||+.+............. ......+... ......
T Consensus 206 v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~----~~~~~~~~~~----------------~~~~~~ 265 (464)
T 3v7d_B 206 VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY----PLVFHTPEEN----------------PYFVGV 265 (464)
T ss_dssp EEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCS----SEEESCGGGC----------------TTEEEE
T ss_pred cEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCc----ceEeeccCCC----------------eEEEEE
Confidence 9999998 333 999999999999999887432111110000 0000000000 011224
Q ss_pred eecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc
Q 041325 206 WVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR 285 (450)
Q Consensus 206 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 285 (450)
+.+|...+.++ +++++++++|+.||.|++||+.+++.+..+. .|...|.+++|+|+ ...+++|+.||.|++||+++
T Consensus 266 ~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~-~~~l~sg~~dg~i~vwd~~~ 341 (464)
T 3v7d_B 266 LRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILS-GHTDRIYSTIYDHE-RKRCISASMDTTIRIWDLEN 341 (464)
T ss_dssp ECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEETT-TTEEEEEETTSCEEEEETTT
T ss_pred ccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEec-CCCCCEEEEEEcCC-CCEEEEEeCCCcEEEEECCC
Confidence 45788888877 5678999999999999999999999999887 89999999999984 44899999999999999987
Q ss_pred hhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEE
Q 041325 286 AALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL 365 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 365 (450)
++ .+..+.+|...|.+++|+ +++|++|+.||.|++||+.+++... .....+...+.++
T Consensus 342 ~~--------~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~------------~~~~~~~~~~~~~ 399 (464)
T 3v7d_B 342 GE--------LMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF------------SYHHTNLSAITTF 399 (464)
T ss_dssp TE--------EEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEE------------EEECTTCCCEEEE
T ss_pred Cc--------EEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceee------------eecCCCCccEEEE
Confidence 66 667778899999999997 5899999999999999999876442 1112223334445
Q ss_pred EEeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEE-ecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcE
Q 041325 366 AVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAV-LEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEI 444 (450)
Q Consensus 366 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i 444 (450)
..+++++++|+ ||.|++||++++ +.+.. +..|...|.+++|+ +.. ++++++.||.+
T Consensus 400 ~~~~~~l~~~~-dg~i~iwd~~~g--------~~~~~~~~~~~~~v~~v~~~-~~~-------------l~~~~~~~g~~ 456 (464)
T 3v7d_B 400 YVSDNILVSGS-ENQFNIYNLRSG--------KLVHANILKDADQIWSVNFK-GKT-------------LVAAVEKDGQS 456 (464)
T ss_dssp EECSSEEEEEE-TTEEEEEETTTC--------CEEESCTTTTCSEEEEEEEE-TTE-------------EEEEEEETTEE
T ss_pred EeCCCEEEEec-CCeEEEEECCCC--------cEEehhhccCCCcEEEEEec-CCE-------------EEEEEEeCCeE
Confidence 55577888888 999999999985 55554 67789999999997 333 67777778766
Q ss_pred EEEE
Q 041325 445 KIWQ 448 (450)
Q Consensus 445 ~iw~ 448 (450)
.+|-
T Consensus 457 ~i~~ 460 (464)
T 3v7d_B 457 FLEI 460 (464)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6553
No 76
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=2.2e-36 Score=271.48 Aligned_cols=270 Identities=12% Similarity=0.131 Sum_probs=223.2
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC---eEEEEeCCC
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD---KLFSAHQDH 147 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~l~s~~~dg 147 (450)
+|.+.|++++| ++++|++|+.||.|++|++.++..... .....+|...|.+++|+++ .|++++.||
T Consensus 9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~---------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 79 (342)
T 1yfq_A 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVD---------LLQSLRYKHPLLCCNFIDNTDLQIYVGTVQG 79 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEE---------EEEEEECSSCEEEEEEEESSSEEEEEEETTS
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcccc---------ceeeeecCCceEEEEECCCCCcEEEEEcCCC
Confidence 89999999999 799999999999999999987762111 1124589999999999844 699999999
Q ss_pred eEEEEEc-CCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeec--CCCceEEEEEccCCCE
Q 041325 148 KIRVWKI-DNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVH--HVDTVSALALSSDGSL 224 (450)
Q Consensus 148 ~i~iw~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~ 224 (450)
.|++||+ ..+.. ..+.+ |...|.+++|+| +++
T Consensus 80 ~i~~wd~~~~~~~--------------------------------------------~~~~~~~~~~~v~~l~~~~-~~~ 114 (342)
T 1yfq_A 80 EILKVDLIGSPSF--------------------------------------------QALTNNEANLGICRICKYG-DDK 114 (342)
T ss_dssp CEEEECSSSSSSE--------------------------------------------EECBSCCCCSCEEEEEEET-TTE
T ss_pred eEEEEEeccCCce--------------------------------------------EeccccCCCCceEEEEeCC-CCE
Confidence 9999999 76621 12335 888999999999 999
Q ss_pred EEEEeCCCcEEEEecCC---------CeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc-hhhhccccc
Q 041325 225 LYSTSWDRTFKIWRTSD---------FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR-AALQVNKKH 294 (450)
Q Consensus 225 l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~ 294 (450)
+++++.|+.|++||+++ ++++..+. +...+.+++|++ +. +++++.|+.|++||++. ....
T Consensus 115 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~--~~-l~~~~~d~~i~i~d~~~~~~~~----- 184 (342)
T 1yfq_A 115 LIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK--VKNKIFTMDTNS--SR-LIVGMNNSQVQWFRLPLCEDDN----- 184 (342)
T ss_dssp EEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS--SCCCEEEEEECS--SE-EEEEESTTEEEEEESSCCTTCC-----
T ss_pred EEEEcCCCeEEEEcccccccccccccCCeeeEEe--eCCceEEEEecC--Cc-EEEEeCCCeEEEEECCcccccc-----
Confidence 99999999999999987 66666664 888999999985 33 99999999999999976 4310
Q ss_pred hhhhhHhhcccceEEEEEcC-CCCEEEEeeCCCcEEEEEcCCC------ceeeeCCCCCCceeeeccccCC---------
Q 041325 295 SLVQTLEKHKSAVTALALST-DGTVLYSGACDRSILVWERDQG------NYIVDGDDDSGHMVLKGALRGH--------- 358 (450)
Q Consensus 295 ~~~~~~~~~~~~i~~l~~~~-~~~~l~~g~~dg~i~vwd~~~~------~~~~~~~~~~~~~~~~~~~~~~--------- 358 (450)
.......+...+.+++|+| ++++|++++.||.|++|+++.. +.. ..+..|
T Consensus 185 -~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~ 250 (342)
T 1yfq_A 185 -GTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKR-------------FAFRCHRLNLKDTNL 250 (342)
T ss_dssp -CEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTC-------------EEEECCCCCTTCCSS
T ss_pred -ceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccc-------------eeeeccccccccccc
Confidence 1122335778899999999 9999999999999999999865 322 233334
Q ss_pred ccceEEEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCC-CcceEEEEEEecCCCCCCCCCCCCceEEE
Q 041325 359 TKAILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGH-RRPVKCLTAVVDSDYSNRNSDHSSTSFLV 435 (450)
Q Consensus 359 ~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~~~~~~~~~~~~~l 435 (450)
...|.+++|++ ++|++++.||.|++||+.++ +.+..+.+| ..+|.+++ |++. +|
T Consensus 251 ~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--------~~~~~~~~~h~~~v~~~~--~~~~-------------~l 307 (342)
T 1yfq_A 251 AYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR--------KKIKNFAKFNEDSVVKIA--CSDN-------------IL 307 (342)
T ss_dssp CCCEEEEEECTTTCCEEEEETTSCEEEEETTTT--------EEEEECCCCSSSEEEEEE--ECSS-------------EE
T ss_pred ceeEEEEEEcCCCCEEEEecCCceEEEEcCccH--------hHhhhhhcccCCCceEec--CCCC-------------eE
Confidence 45999999985 58999999999999999874 678889998 99999999 9998 99
Q ss_pred EEcccCCc
Q 041325 436 YSGSLDCE 443 (450)
Q Consensus 436 ~s~~~Dg~ 443 (450)
++++.||.
T Consensus 308 ~s~s~Dg~ 315 (342)
T 1yfq_A 308 CLATSDDT 315 (342)
T ss_dssp EEEEECTH
T ss_pred EEEecCCc
Confidence 99999998
No 77
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=6.7e-36 Score=299.38 Aligned_cols=331 Identities=18% Similarity=0.222 Sum_probs=261.7
Q ss_pred ccCCcccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eC
Q 041325 8 PMPCRRNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AG 85 (450)
Q Consensus 8 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~ 85 (450)
..-..+++.+.|+|+...+.+...+..+. ++...+++.++++. +|...|++++| ++
T Consensus 10 ~~h~~~v~~i~~sp~~~~la~~~~~g~v~--------------------iwd~~~~~~~~~~~--~~~~~v~~~~~s~~~ 67 (814)
T 3mkq_A 10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVE--------------------IWNYETQVEVRSIQ--VTETPVRAGKFIARK 67 (814)
T ss_dssp EEECSCEEEEEECSSSSEEEEEETTSEEE--------------------EEETTTTEEEEEEE--CCSSCEEEEEEEGGG
T ss_pred ecCCCceEEEEECCCCCEEEEEeCCCEEE--------------------EEECCCCceEEEEe--cCCCcEEEEEEeCCC
Confidence 33345788899999998888876554443 33445567888888 99999999999 79
Q ss_pred CEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEe
Q 041325 86 KLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYS 163 (450)
Q Consensus 86 ~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~ 163 (450)
++|++|+.||.|++||+.+++.... +.+|.+.|.+++|+++. |++++.||.|++||++++..
T Consensus 68 ~~l~~~~~dg~i~vw~~~~~~~~~~------------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~---- 131 (814)
T 3mkq_A 68 NWIIVGSDDFRIRVFNYNTGEKVVD------------FEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWA---- 131 (814)
T ss_dssp TEEEEEETTSEEEEEETTTCCEEEE------------EECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSE----
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEE------------EecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCce----
Confidence 9999999999999999999886665 67899999999999877 99999999999999987521
Q ss_pred ccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCCC
Q 041325 164 TSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSDF 242 (450)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~ 242 (450)
....+.+|...|.+++|+| +++.+++++.||.|++||+.++
T Consensus 132 --------------------------------------~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~ 173 (814)
T 3mkq_A 132 --------------------------------------LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQS 173 (814)
T ss_dssp --------------------------------------EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCS
T ss_pred --------------------------------------EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCC
Confidence 1123346888999999999 8999999999999999999988
Q ss_pred eEEEEeecccccceEEEEEeec-CCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEE
Q 041325 243 RCLESVKNAHDDAINAIVVSKS-NDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYS 321 (450)
Q Consensus 243 ~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~ 321 (450)
+....+...+...+.+++|+|. +..++++++.||.|++||+++++ ....+..|...|.+++|+|++++|++
T Consensus 174 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~l~~ 245 (814)
T 3mkq_A 174 TPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKS--------CVATLEGHMSNVSFAVFHPTLPIIIS 245 (814)
T ss_dssp SCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTE--------EEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred cceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCc--------EEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence 8888777556689999999983 23489999999999999997765 56666778999999999999999999
Q ss_pred eeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC---eEEEEeCCCeEEEeeCCCCcccc--CCC
Q 041325 322 GACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN---LLFSGSSDNTIRIWRRSSSVTDH--QKG 396 (450)
Q Consensus 322 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~~~dg~v~iwd~~~~~~~~--~~~ 396 (450)
++.||.|++||+.+++.+ ..+..|...+.+++|+++ .+++++.++.+.+|++....... ...
T Consensus 246 ~~~dg~v~vwd~~~~~~~-------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (814)
T 3mkq_A 246 GSEDGTLKIWNSSTYKVE-------------KTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPV 312 (814)
T ss_dssp EETTSCEEEEETTTCSEE-------------EEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSS
T ss_pred EeCCCeEEEEECCCCcEE-------------EEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCC
Confidence 999999999999987755 566778889999999865 24555557778889876432100 000
Q ss_pred ---------------------------------ceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCc
Q 041325 397 ---------------------------------YSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCE 443 (450)
Q Consensus 397 ---------------------------------~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~ 443 (450)
......+..+...+.+++|+|+++ ++++++ ||.
T Consensus 313 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-------------~la~~~-~~~ 378 (814)
T 3mkq_A 313 GKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGR-------------FVTVVG-DGE 378 (814)
T ss_dssp SEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSS-------------EEEEEE-TTE
T ss_pred CCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCC-------------EEEEec-CCE
Confidence 001122344556788899999888 676666 777
Q ss_pred EEEEEe
Q 041325 444 IKIWQI 449 (450)
Q Consensus 444 i~iw~l 449 (450)
+.+|++
T Consensus 379 ~~i~~~ 384 (814)
T 3mkq_A 379 YVIYTA 384 (814)
T ss_dssp EEEEET
T ss_pred EEEEEC
Confidence 777764
No 78
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=6.4e-36 Score=271.12 Aligned_cols=288 Identities=16% Similarity=0.217 Sum_probs=226.6
Q ss_pred cceeeeEEeecCCCcceEEEEE--e---CCEEEEeeCCCcEEEecCCC-CCceeeeecCCCCcceeEEecCCCceEEEEE
Q 041325 62 EHQCSATLKVKGNSSYIPSLAI--A---GKLLYGGSSNGEIRAWNRDP-NNYVNITSTDVGDHANVVATGNGDAVKSLVV 135 (450)
Q Consensus 62 ~~~~~~~l~~~~h~~~v~~~~~--d---~~~l~tgs~dg~v~vw~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 135 (450)
+.+.++.+. +|.+.|++++| + |++|++|+.||.|++||+.+ +..... .+.+|...|.+++|
T Consensus 28 ~~~~~~~~~--~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~-----------~~~~h~~~v~~~~~ 94 (368)
T 3mmy_A 28 PMKDIEVTS--SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPK-----------AQQMHTGPVLDVCW 94 (368)
T ss_dssp TTCCEECSS--CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEE-----------EEEECSSCEEEEEE
T ss_pred CcceeEecc--CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEE-----------EeccccCCEEEEEE
Confidence 345666666 99999999999 4 58999999999999999987 333211 36789999999999
Q ss_pred eCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCce
Q 041325 136 LGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTV 213 (450)
Q Consensus 136 ~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 213 (450)
+++. |++++.||.|++||++++.. . .+..|...|
T Consensus 95 ~~~~~~l~s~~~dg~v~iwd~~~~~~----------------~----------------------------~~~~~~~~v 130 (368)
T 3mmy_A 95 SDDGSKVFTASCDKTAKMWDLSSNQA----------------I----------------------------QIAQHDAPV 130 (368)
T ss_dssp CTTSSEEEEEETTSEEEEEETTTTEE----------------E----------------------------EEEECSSCE
T ss_pred CcCCCEEEEEcCCCcEEEEEcCCCCc----------------e----------------------------eeccccCce
Confidence 9876 99999999999999998732 1 123588899
Q ss_pred EEEEE--ccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc
Q 041325 214 SALAL--SSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN 291 (450)
Q Consensus 214 ~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 291 (450)
.+++| ++++++|++++.||.|++||+++++.+..+. ....+.++.+. .+ .+++++.++.+++|+++....
T Consensus 131 ~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~--~~~~~~~~~~~--~~-~~~~~~~~~~i~~~~~~~~~~--- 202 (368)
T 3mmy_A 131 KTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQ--LPERCYCADVI--YP-MAVVATAERGLIVYQLENQPS--- 202 (368)
T ss_dssp EEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEE--CSSCEEEEEEE--TT-EEEEEEGGGCEEEEECSSSCE---
T ss_pred EEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEe--cCCCceEEEec--CC-eeEEEeCCCcEEEEEeccccc---
Confidence 99999 8899999999999999999999999888887 33467777776 34 788888999999999976541
Q ss_pred ccchhhhhHhhcccceEEEEEcCCCCE----EEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCcc-------
Q 041325 292 KKHSLVQTLEKHKSAVTALALSTDGTV----LYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK------- 360 (450)
Q Consensus 292 ~~~~~~~~~~~~~~~i~~l~~~~~~~~----l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 360 (450)
...... ..+...+.++++.++... +++++.||.|++||++..... .....+..|..
T Consensus 203 -~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~----------~~~~~~~~~~~~~~~~~~ 269 (368)
T 3mmy_A 203 -EFRRIE--SPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPA----------KDNFTFKCHRSNGTNTSA 269 (368)
T ss_dssp -EEEECC--CSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHH----------HHSEEEECSEEC----CC
T ss_pred -hhhhcc--ccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCcc----------ccceeeeeeecccccccc
Confidence 111111 123345566666655544 999999999999999876320 11123344443
Q ss_pred -----ceEEEEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceE
Q 041325 361 -----AILCLAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSF 433 (450)
Q Consensus 361 -----~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~ 433 (450)
.|++++|+++ +|++++.||.|++||+.++ +++..+.+|..+|++++|+|++.
T Consensus 270 ~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~--------~~~~~~~~~~~~v~~~~~s~~g~------------- 328 (368)
T 3mmy_A 270 PQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR--------TKLKTSEQLDQPISACCFNHNGN------------- 328 (368)
T ss_dssp CEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT--------EEEEECCCCSSCEEEEEECTTSS-------------
T ss_pred cccccceEEEEEecCCCEEEEEccCCeEEEEECCCC--------cEEEEecCCCCCceEEEECCCCC-------------
Confidence 7999999854 9999999999999999974 77888999999999999999999
Q ss_pred EEEEcccCCcEEEEE
Q 041325 434 LVYSGSLDCEIKIWQ 448 (450)
Q Consensus 434 ~l~s~~~Dg~i~iw~ 448 (450)
+|++++.|+..+.|+
T Consensus 329 ~l~~~s~d~~~~~~~ 343 (368)
T 3mmy_A 329 IFAYASSYDWSKGHE 343 (368)
T ss_dssp CEEEEECCCSTTCGG
T ss_pred eEEEEeccccccccc
Confidence 899999998665554
No 79
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=2.3e-35 Score=286.24 Aligned_cols=284 Identities=18% Similarity=0.244 Sum_probs=236.1
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCC----CceeeeecCCCCcceeEEecCCCc-eEEEEEeC--Ce--EE
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPN----NYVNITSTDVGDHANVVATGNGDA-VKSLVVLG--DK--LF 141 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~----~~~~~~~~~~~~~~~~~~~~h~~~-v~~l~~~~--~~--l~ 141 (450)
.|.+.|++++| |+++|++++ ++.|++||+.++ +.... +.+|... |.+++|+| +. |+
T Consensus 16 ~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~~------------~~~h~~~~v~~~~~sp~~~~~~l~ 82 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVVQ------------FTGHGSSVVTTVKFSPIKGSQYLC 82 (615)
T ss_dssp CCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEEE------------ECTTTTSCEEEEEECSSTTCCEEE
T ss_pred CccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccceE------------EecCCCceEEEEEECcCCCCCEEE
Confidence 78899999999 799999998 789999999877 54444 7799999 99999999 66 99
Q ss_pred EEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC
Q 041325 142 SAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD 221 (450)
Q Consensus 142 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 221 (450)
+++.||.|++||+.++.... .........+..|...|.+++|+|+
T Consensus 83 s~~~dg~v~vw~~~~~~~~~-----------------------------------~~~~~~~~~~~~~~~~v~~~~~s~~ 127 (615)
T 1pgu_A 83 SGDESGKVIVWGWTFDKESN-----------------------------------SVEVNVKSEFQVLAGPISDISWDFE 127 (615)
T ss_dssp EEETTSEEEEEEEEEEGGGT-----------------------------------EEEEEEEEEEECCSSCEEEEEECTT
T ss_pred EecCCCEEEEEeCCCCcccc-----------------------------------cccccccchhhcccccEEEEEEeCC
Confidence 99999999999996441000 0001122234468889999999999
Q ss_pred CCEEEEEeCC----CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhh
Q 041325 222 GSLLYSTSWD----RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLV 297 (450)
Q Consensus 222 ~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 297 (450)
+++|++++.+ +.|.+|| .++.+..+. .|...|.+++|+|++..++++++.|+.|++||+.+.+ ..
T Consensus 128 ~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~--------~~ 196 (615)
T 1pgu_A 128 GRRLCVVGEGRDNFGVFISWD--SGNSLGEVS-GHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFK--------FS 196 (615)
T ss_dssp SSEEEEEECCSSCSEEEEETT--TCCEEEECC-SCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBE--------EE
T ss_pred CCEEEEeccCCCCccEEEEEE--CCCcceeee-cCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcc--------ee
Confidence 9999999987 7899998 566777777 8999999999999766689999999999999987665 55
Q ss_pred hhHhhccc---ceEEEEEcCC-CCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccc-c---CCccceEEEEEe-
Q 041325 298 QTLEKHKS---AVTALALSTD-GTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGAL-R---GHTKAILCLAVV- 368 (450)
Q Consensus 298 ~~~~~~~~---~i~~l~~~~~-~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~v~~~~~~- 368 (450)
..+..|.. .|.+++|+|+ +++|++++.||.|++||+.+++.+ ..+ . .|...|.+++|+
T Consensus 197 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-------------~~~~~~~~~~~~~v~~~~~~~ 263 (615)
T 1pgu_A 197 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL-------------KYIEDDQEPVQGGIFALSWLD 263 (615)
T ss_dssp EEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEE-------------EECCBTTBCCCSCEEEEEESS
T ss_pred eeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEe-------------EEecccccccCCceEEEEEcC
Confidence 66777888 9999999999 999999999999999999988765 334 4 789999999995
Q ss_pred CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCC----CcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcE
Q 041325 369 SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGH----RRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEI 444 (450)
Q Consensus 369 ~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h----~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i 444 (450)
+++|++++.||.|++||+.++ +.+..+..+ ...+.++.|. ++. ++++++.||.|
T Consensus 264 ~~~l~~~~~d~~i~~wd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-~~~-------------~l~~~~~~g~i 321 (615)
T 1pgu_A 264 SQKFATVGADATIRVWDVTTS--------KCVQKWTLDKQQLGNQQVGVVAT-GNG-------------RIISLSLDGTL 321 (615)
T ss_dssp SSEEEEEETTSEEEEEETTTT--------EEEEEEECCTTCGGGCEEEEEEE-ETT-------------EEEEEETTSCE
T ss_pred CCEEEEEcCCCcEEEEECCCC--------cEEEEEcCCCCcccCceeEEEeC-CCC-------------eEEEEECCCCE
Confidence 669999999999999999874 566666665 4678888886 777 89999999999
Q ss_pred EEEEeC
Q 041325 445 KIWQIR 450 (450)
Q Consensus 445 ~iw~l~ 450 (450)
++||++
T Consensus 322 ~~~d~~ 327 (615)
T 1pgu_A 322 NFYELG 327 (615)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 999974
No 80
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=1.5e-35 Score=273.40 Aligned_cols=260 Identities=23% Similarity=0.342 Sum_probs=220.3
Q ss_pred cccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCce
Q 041325 53 FRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAV 130 (450)
Q Consensus 53 ~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 130 (450)
..+.++...++++.+.+++++|...|++|+| ||++||+|+.||.|+|||+.+++.+.. +.+|...+
T Consensus 125 ~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~------------~~~h~~~v 192 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN------------MTSHSARV 192 (420)
T ss_dssp TEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEE------------ECCCSSCE
T ss_pred CEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEE------------EeCCCCce
Confidence 3345566778889999998899999999999 799999999999999999999887665 67999999
Q ss_pred EEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCC
Q 041325 131 KSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHV 210 (450)
Q Consensus 131 ~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (450)
.++.+++..|++|+.|+.+++||...... ....+.+|.
T Consensus 193 ~~~s~~~~~l~sgs~d~~i~~~d~~~~~~------------------------------------------~~~~~~~h~ 230 (420)
T 4gga_A 193 GSLSWNSYILSSGSRSGHIHHHDVRVAEH------------------------------------------HVATLSGHS 230 (420)
T ss_dssp EEEEEETTEEEEEETTSEEEEEETTSSSC------------------------------------------EEEEEECCS
T ss_pred EEEeeCCCEEEEEeCCCceeEeeecccce------------------------------------------eeEEecccc
Confidence 99999999999999999999999887521 122345799
Q ss_pred CceEEEEEccCCCEEEEEeCCCcEEEEecCCCeE----EEEeecccccceEEEEEeecCCcEEEE--EcCCCcEEEEeCc
Q 041325 211 DTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRC----LESVKNAHDDAINAIVVSKSNDGFVYT--GSADTKIKVWKKL 284 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~dg~i~vwd~~ 284 (450)
..+..+.++++++++++++.|+.+++||..+++. +.... .|...|.+++|+|....++++ |+.|+.|++||+.
T Consensus 231 ~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~-~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~ 309 (420)
T 4gga_A 231 QEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFT-QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVC 309 (420)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEEC-CCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETT
T ss_pred cceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeec-ccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCC
Confidence 9999999999999999999999999999987653 33333 688999999999988777765 4579999999998
Q ss_pred chhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEee--CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccce
Q 041325 285 RAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA--CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI 362 (450)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 362 (450)
+++ ....+. +...+.++.|+|+++.+++++ .|+.|+|||+.+++++ ..+.+|...|
T Consensus 310 t~~--------~~~~~~-~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v-------------~~l~gH~~~V 367 (420)
T 4gga_A 310 SGA--------CLSAVD-AHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV-------------AELKGHTSRV 367 (420)
T ss_dssp TTE--------EEEEEE-CSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE-------------EEECCCSSCE
T ss_pred ccc--------cceeec-cccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEE-------------EEEcCCCCCE
Confidence 776 344443 456789999999999988765 7999999999998765 5778999999
Q ss_pred EEEEEeC--CeEEEEeCCCeEEEeeCCCC
Q 041325 363 LCLAVVS--NLLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 363 ~~~~~~~--~~l~s~~~dg~v~iwd~~~~ 389 (450)
++++|++ ++|+||+.|++|++||+...
T Consensus 368 ~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 368 LSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp EEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred EEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 9999985 49999999999999998753
No 81
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2e-35 Score=270.90 Aligned_cols=262 Identities=23% Similarity=0.307 Sum_probs=221.3
Q ss_pred ccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCc
Q 041325 52 SFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDA 129 (450)
Q Consensus 52 ~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 129 (450)
......+...+++....+.. .|...|++++| ++++|++|+.||.|++||+.+++.... +.+|...
T Consensus 112 d~~v~lw~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~------------~~~~~~~ 178 (401)
T 4aez_A 112 ERNVYVWNADSGSVSALAET-DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRT------------MAGHQAR 178 (401)
T ss_dssp TTEEEEEETTTCCEEEEEEC-CTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEE------------ECCCSSC
T ss_pred CCeEEEeeCCCCcEeEeeec-CCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEE------------ecCCCCc
Confidence 34455566667777777773 38999999999 799999999999999999998876665 6689999
Q ss_pred eEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecC
Q 041325 130 VKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHH 209 (450)
Q Consensus 130 v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (450)
|.+++|.++.+++++.||.|++||++... .....+.+|
T Consensus 179 v~~~~~~~~~l~~~~~dg~i~i~d~~~~~------------------------------------------~~~~~~~~~ 216 (401)
T 4aez_A 179 VGCLSWNRHVLSSGSRSGAIHHHDVRIAN------------------------------------------HQIGTLQGH 216 (401)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEETTSSS------------------------------------------CEEEEEECC
T ss_pred eEEEEECCCEEEEEcCCCCEEEEecccCc------------------------------------------ceeeEEcCC
Confidence 99999999899999999999999998542 112234468
Q ss_pred CCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEc--CCCcEEEEeCcchh
Q 041325 210 VDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGS--ADTKIKVWKKLRAA 287 (450)
Q Consensus 210 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~ 287 (450)
.+.|.+++|+|++++|++|+.||.|++||+.+++.+..+. .|...|.+++|+|.+..++++++ .|+.|++||+++++
T Consensus 217 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~ 295 (401)
T 4aez_A 217 SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKT-NHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGA 295 (401)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEEC-CCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCC
T ss_pred CCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEec-CCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCC
Confidence 9999999999999999999999999999999999888887 78999999999997777888876 79999999998765
Q ss_pred hhccccchhhhhHhhcccceEEEEEcCCCCEEEE--eeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEE
Q 041325 288 LQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYS--GACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL 365 (450)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~--g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 365 (450)
.+..+. +...|.+++|+|++++|++ |+.||.|++||+.+++.. ....+.+|...|.++
T Consensus 296 --------~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~-----------~~~~~~~h~~~v~~~ 355 (401)
T 4aez_A 296 --------RVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLT-----------KQVDIPAHDTRVLYS 355 (401)
T ss_dssp --------EEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEE-----------EEEEEECCSSCCCEE
T ss_pred --------EEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccce-----------eEEEecCCCCCEEEE
Confidence 344443 5678999999999999999 558999999999976543 334567899999999
Q ss_pred EEeC--CeEEEEeCCCeEEEeeCCCC
Q 041325 366 AVVS--NLLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 366 ~~~~--~~l~s~~~dg~v~iwd~~~~ 389 (450)
+|++ .+|++++.||.|++||+.++
T Consensus 356 ~~s~dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 356 ALSPDGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp EECTTSSEEEEECTTSEEEEEECCC-
T ss_pred EECCCCCEEEEEeCCCcEEEEECCCC
Confidence 9984 49999999999999999875
No 82
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=100.00 E-value=1e-35 Score=275.92 Aligned_cols=264 Identities=24% Similarity=0.385 Sum_probs=220.0
Q ss_pred ccccCCCCCccceeeeEEeecCCCcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceE
Q 041325 52 SFRKQAPAASEHQCSATLKVKGNSSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVK 131 (450)
Q Consensus 52 ~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 131 (450)
......+...+++++.++. +|...|++++|++++|++|+.||.|++||+.+++.... +.+|...|.
T Consensus 152 dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~l~sg~~dg~i~vwd~~~~~~~~~------------~~~h~~~v~ 217 (435)
T 1p22_A 152 DNTIKIWDKNTLECKRILT--GHTGSVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNT------------LIHHCEAVL 217 (435)
T ss_dssp SSCEEEEESSSCCEEEEEC--CCSSCEEEEECCSSEEEEEETTSCEEEEESSSCCEEEE------------ECCCCSCEE
T ss_pred CCeEEEEeCCCCeEEEEEc--CCCCcEEEEEECCCEEEEEcCCCeEEEEECCCCcEEEE------------EcCCCCcEE
Confidence 3445566667788888888 99999999999999999999999999999999886655 678999999
Q ss_pred EEEEeCCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCC
Q 041325 132 SLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVD 211 (450)
Q Consensus 132 ~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (450)
+++|+++.+++|+.||.|++||+.++.... ....+.+|..
T Consensus 218 ~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~----------------------------------------~~~~~~~~~~ 257 (435)
T 1p22_A 218 HLRFNNGMMVTCSKDRSIAVWDMASPTDIT----------------------------------------LRRVLVGHRA 257 (435)
T ss_dssp EEECCTTEEEEEETTSCEEEEECSSSSCCE----------------------------------------EEEEECCCSS
T ss_pred EEEEcCCEEEEeeCCCcEEEEeCCCCCCce----------------------------------------eeeEecCCCC
Confidence 999999999999999999999998763210 0123346889
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN 291 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 291 (450)
.|.+++| +++++++|+.||.|++||+++++.+..+. .|...|.++.+. +.++++|+.||.|++||+++++
T Consensus 258 ~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~---~~~l~~g~~dg~i~iwd~~~~~---- 327 (435)
T 1p22_A 258 AVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLN-GHKRGIACLQYR---DRLVVSGSSDNTIRLWDIECGA---- 327 (435)
T ss_dssp CEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEEE---TTEEEEEETTSCEEEEETTTCC----
T ss_pred cEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEc-CCCCcEEEEEeC---CCEEEEEeCCCeEEEEECCCCC----
Confidence 9999999 68899999999999999999999999988 899999999995 4599999999999999998766
Q ss_pred ccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCe
Q 041325 292 KKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNL 371 (450)
Q Consensus 292 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 371 (450)
.+..+.+|...|.+++| ++++|++|+.||.|++||+.+++... ..........+.+|...|++++|++++
T Consensus 328 ----~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~----~~~~~~~~~~~~~h~~~v~~l~~~~~~ 397 (435)
T 1p22_A 328 ----CLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPR----APAGTLCLRTLVEHSGRVFRLQFDEFQ 397 (435)
T ss_dssp ----EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTT----SCTTTTEEEEECCCSSCCCCEEECSSC
T ss_pred ----EEEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCcc----ccccchheeeccCCCCCeEEEEeCCCE
Confidence 56677789999999999 78899999999999999997654110 000111335678899999999999999
Q ss_pred EEEEeCCCeEEEeeCCCC
Q 041325 372 LFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 372 l~s~~~dg~v~iwd~~~~ 389 (450)
|++|+.||.|++||+.+.
T Consensus 398 l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 398 IVSSSHDDTILIWDFLND 415 (435)
T ss_dssp EEECCSSSEEEEEC----
T ss_pred EEEEeCCCEEEEEECCCC
Confidence 999999999999999864
No 83
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-35 Score=267.75 Aligned_cols=259 Identities=21% Similarity=0.234 Sum_probs=207.4
Q ss_pred eeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC---
Q 041325 64 QCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD--- 138 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--- 138 (450)
+++++++ +|...|++++| ++++||+|+.||.|+|||+........ ..+.+|...|.+++|+++
T Consensus 2 ~~~~~~~--~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~----------~~~~~h~~~v~~~~~~~~~~~ 69 (379)
T 3jrp_A 2 SMVVIAN--AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLI----------DTLTGHEGPVWRVDWAHPKFG 69 (379)
T ss_dssp ---CCEE--ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEE----------EEECCCSSCEEEEEECCGGGC
T ss_pred CccEEec--CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceee----------eEecCCCCcEEEEEeCCCCCC
Confidence 4667778 99999999999 799999999999999999874332111 236789999999999843
Q ss_pred -eEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEE
Q 041325 139 -KLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALA 217 (450)
Q Consensus 139 -~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 217 (450)
.|++++.||.|++||+.++.. .....+..|...|.+++
T Consensus 70 ~~l~s~~~dg~v~iwd~~~~~~-----------------------------------------~~~~~~~~~~~~v~~~~ 108 (379)
T 3jrp_A 70 TILASCSYDGKVLIWKEENGRW-----------------------------------------SQIAVHAVHSASVNSVQ 108 (379)
T ss_dssp SEEEEEETTSCEEEEEEETTEE-----------------------------------------EEEEEECCCSSCEEEEE
T ss_pred CEEEEeccCCEEEEEEcCCCce-----------------------------------------eEeeeecCCCcceEEEE
Confidence 499999999999999988731 01122335888999999
Q ss_pred EccC--CCEEEEEeCCCcEEEEecCCCeE--EEEeecccccceEEEEEeec------------CCcEEEEEcCCCcEEEE
Q 041325 218 LSSD--GSLLYSTSWDRTFKIWRTSDFRC--LESVKNAHDDAINAIVVSKS------------NDGFVYTGSADTKIKVW 281 (450)
Q Consensus 218 ~~~~--~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~------------~~~~l~~~~~dg~i~vw 281 (450)
|+|+ +++|++++.|+.|++||+.++.. ...+. .|...|.+++|+|. +..++++++.||.|++|
T Consensus 109 ~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~ 187 (379)
T 3jrp_A 109 WAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIW 187 (379)
T ss_dssp ECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEE-CCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEE
T ss_pred eCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEec-CCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEE
Confidence 9998 99999999999999999988732 33344 78899999999985 35689999999999999
Q ss_pred eCcchhhhccccchhhhhHhhcccceEEEEEcCC---CCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC
Q 041325 282 KKLRAALQVNKKHSLVQTLEKHKSAVTALALSTD---GTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358 (450)
Q Consensus 282 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~---~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (450)
|++.+. ........+.+|...|.+++|+|+ +++|++++.||.|++||+++++.. ..........|
T Consensus 188 d~~~~~----~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~~--------~~~~~~~~~~~ 255 (379)
T 3jrp_A 188 KYNSDA----QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP--------WKKTLLKEEKF 255 (379)
T ss_dssp EEETTT----TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC--------CEEEESSSSCC
T ss_pred EecCCC----cceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCcc--------ceeeeeccccC
Confidence 997655 223345566789999999999999 899999999999999999976411 01122344558
Q ss_pred ccceEEEEEeCC--eEEEEeCCCeEEEeeCCC
Q 041325 359 TKAILCLAVVSN--LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 359 ~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~ 388 (450)
...|++++|+++ +|++++.||.|++|++..
T Consensus 256 ~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~ 287 (379)
T 3jrp_A 256 PDVLWRASWSLSGNVLALSGGDNKVTLWKENL 287 (379)
T ss_dssp SSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred CCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence 899999999854 999999999999999884
No 84
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=4.4e-35 Score=268.87 Aligned_cols=290 Identities=15% Similarity=0.251 Sum_probs=219.8
Q ss_pred cceEEEEEeCCE---EEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC-Ce--EEEEeCCCeE
Q 041325 76 SYIPSLAIAGKL---LYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG-DK--LFSAHQDHKI 149 (450)
Q Consensus 76 ~~v~~~~~d~~~---l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~-~~--l~s~~~dg~i 149 (450)
.....++++.++ +++|+.||.|+||++........ ....+.+|.+.|.+++|++ +. |++|+.||+|
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~--------~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v 106 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK--------NVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTV 106 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT--------TCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEE
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC--------CCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeE
Confidence 344557775544 34578899999999865431100 1112568999999999998 44 9999999999
Q ss_pred EEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCC-CEEEEE
Q 041325 150 RVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDG-SLLYST 228 (450)
Q Consensus 150 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~ 228 (450)
++||+.++.... . .......+.+|...|.+++|+|++ ++|+++
T Consensus 107 ~vw~~~~~~~~~----------------~--------------------~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~ 150 (402)
T 2aq5_A 107 MVWEIPDGGLVL----------------P--------------------LREPVITLEGHTKRVGIVAWHPTAQNVLLSA 150 (402)
T ss_dssp EEEECCTTCCSS----------------C--------------------BCSCSEEEECCSSCEEEEEECSSBTTEEEEE
T ss_pred EEEEccCCCCcc----------------c--------------------cCCceEEecCCCCeEEEEEECcCCCCEEEEE
Confidence 999998762100 0 001233456799999999999998 699999
Q ss_pred eCCCcEEEEecCCCeEEEEee-cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhH-hhcccc
Q 041325 229 SWDRTFKIWRTSDFRCLESVK-NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTL-EKHKSA 306 (450)
Q Consensus 229 ~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~ 306 (450)
+.||.|++||+.+++.+..+. ..|...|.+++|+|+ ..+|++++.||.|++||+++++ .+..+ ..|...
T Consensus 151 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~~~~ 221 (402)
T 2aq5_A 151 GCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRD-GALICTSCRDKRVRVIEPRKGT--------VVAEKDRPHEGT 221 (402)
T ss_dssp ETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTT-SSCEEEEETTSEEEEEETTTTE--------EEEEEECSSCSS
T ss_pred cCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCC-CCEEEEEecCCcEEEEeCCCCc--------eeeeeccCCCCC
Confidence 999999999999999998883 379999999999984 4589999999999999998765 44454 456655
Q ss_pred -eEEEEEcCCCCEEEEe---eCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEE-EEeCCC
Q 041325 307 -VTALALSTDGTVLYSG---ACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLF-SGSSDN 379 (450)
Q Consensus 307 -i~~l~~~~~~~~l~~g---~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~-s~~~dg 379 (450)
+.+++|+|++++|++| +.|+.|++||+++++.. .......|...+.+++|+++ +|+ +|+.||
T Consensus 222 ~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~-----------~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg 290 (402)
T 2aq5_A 222 RPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEP-----------LSLQELDTSSGVLLPFFDPDTNIVYLCGKGDS 290 (402)
T ss_dssp SCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSC-----------SEEEECCCCSSCEEEEEETTTTEEEEEETTCS
T ss_pred cceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCC-----------ceEEeccCCCceeEEEEcCCCCEEEEEEcCCC
Confidence 8999999999999999 78999999999976531 11122346678999999855 664 666899
Q ss_pred eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 380 TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 380 ~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
.|++||+.++. .....+..+. |..+|.+++|+|++. ++++ .|+.+++|++
T Consensus 291 ~i~i~d~~~~~----~~~~~l~~~~-~~~~v~~~~~sp~~~-------------~~~s--~~~~~~~~~l 340 (402)
T 2aq5_A 291 SIRYFEITSEA----PFLHYLSMFS-SKESQRGMGYMPKRG-------------LEVN--KCEIARFYKL 340 (402)
T ss_dssp CEEEEEECSST----TCEEEEEEEC-CSSCCSEEEECCGGG-------------SCGG--GTEEEEEEEE
T ss_pred eEEEEEecCCC----cceEeecccc-cCCcccceEEecccc-------------ccee--cceeEEEEEc
Confidence 99999998741 1122333333 678999999999998 5654 4668999987
No 85
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-34 Score=264.09 Aligned_cols=256 Identities=18% Similarity=0.269 Sum_probs=208.5
Q ss_pred EEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEe
Q 041325 122 VATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVR 199 (450)
Q Consensus 122 ~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (450)
.+.+|.+.|.+++|+++. |++|+.||.|++||+.....
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~---------------------------------------- 45 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH---------------------------------------- 45 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE----------------------------------------
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc----------------------------------------
Confidence 377999999999999876 99999999999999985421
Q ss_pred ecceeeeecCCCceEEEEEccC--CCEEEEEeCCCcEEEEecCCCe--EEEEeecccccceEEEEEeecC-CcEEEEEcC
Q 041325 200 RHKKCTWVHHVDTVSALALSSD--GSLLYSTSWDRTFKIWRTSDFR--CLESVKNAHDDAINAIVVSKSN-DGFVYTGSA 274 (450)
Q Consensus 200 ~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~ 274 (450)
.....+.+|...|.+++|+++ +++|++++.||.|++||+.+++ .+..+. .|...|.+++|+|.. ..++++++.
T Consensus 46 -~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~~ 123 (379)
T 3jrp_A 46 -KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHA-VHSASVNSVQWAPHEYGPLLLVASS 123 (379)
T ss_dssp -EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEET
T ss_pred -eeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeec-CCCcceEEEEeCCCCCCCEEEEecC
Confidence 112234479999999999976 9999999999999999999987 555555 788999999999863 458999999
Q ss_pred CCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcC-------------CCCEEEEeeCCCcEEEEEcCCCceeee
Q 041325 275 DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST-------------DGTVLYSGACDRSILVWERDQGNYIVD 341 (450)
Q Consensus 275 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-------------~~~~l~~g~~dg~i~vwd~~~~~~~~~ 341 (450)
||.|++||++.... .....+..|...|.+++|+| ++++|++|+.||.|++||+++++..
T Consensus 124 d~~i~v~d~~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-- 195 (379)
T 3jrp_A 124 DGKVSVVEFKENGT------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-- 195 (379)
T ss_dssp TSEEEEEECCTTSC------CCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTE--
T ss_pred CCcEEEEecCCCCc------eeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcc--
Confidence 99999999977531 12234557889999999999 6999999999999999999876422
Q ss_pred CCCCCCceeeeccccCCccceEEEEEeC-----CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEE
Q 041325 342 GDDDSGHMVLKGALRGHTKAILCLAVVS-----NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAV 416 (450)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 416 (450)
......+.+|...|.+++|++ ++|++++.||.|++||+..+.. .....+.....|...|++++|+
T Consensus 196 -------~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~v~~~~~s 265 (379)
T 3jrp_A 196 -------YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQG---PWKKTLLKEEKFPDVLWRASWS 265 (379)
T ss_dssp -------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTS---CCEEEESSSSCCSSCEEEEEEC
T ss_pred -------eeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCCc---cceeeeeccccCCCcEEEEEEc
Confidence 234456788999999999984 4899999999999999987411 0012222334588999999999
Q ss_pred ecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 417 VDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
|++. +|++++.||.|++|+++
T Consensus 266 ~~g~-------------~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 266 LSGN-------------VLALSGGDNKVTLWKEN 286 (379)
T ss_dssp SSSC-------------CEEEEESSSSEEEEEEE
T ss_pred CCCC-------------EEEEecCCCcEEEEeCC
Confidence 9999 89999999999999973
No 86
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.2e-35 Score=270.49 Aligned_cols=295 Identities=11% Similarity=0.124 Sum_probs=211.5
Q ss_pred cccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccc--eeeeEEeecCCCcceEEEEE--eCCE
Q 041325 12 RRNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEH--QCSATLKVKGNSSYIPSLAI--AGKL 87 (450)
Q Consensus 12 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~h~~~v~~~~~--d~~~ 87 (450)
..+..+.|+|+...+.+...+..+.. +..... ++++++. +|...|++++| ++++
T Consensus 12 ~~v~~~~~s~~g~~l~~~~~d~~i~i--------------------w~~~~~~~~~~~~~~--~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 12 KPSYEHAFNSQRTEFVTTTATNQVEL--------------------YEQDGNGWKHARTFS--DHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp SCCSCCEECSSSSEEECCCSSSCBCE--------------------EEEETTEEEECCCBC--CCSSCEEEEEECTTTCC
T ss_pred CcEEEEEECCCCCEEEEecCCCEEEE--------------------EEccCCceEEEEEEe--cCCceEEEEEEeCCCCE
Confidence 46888899998888877766555543 222233 5667777 99999999999 7899
Q ss_pred EEEeeCCCcEEEecCCCCC-ceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEec
Q 041325 88 LYGGSSNGEIRAWNRDPNN-YVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYST 164 (450)
Q Consensus 88 l~tgs~dg~v~vw~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~ 164 (450)
|++|+.||.|++||+.+++ ... ...+.+|...|.+++|+++. |++++.|+.|++||++.+...
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~---- 135 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTWKQ----------TLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDW---- 135 (377)
T ss_dssp EEEEETTSSEEEC------CCCC----------EEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----C----
T ss_pred EEEEeCCCeEEEEEcCCCCceee----------eeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccc----
Confidence 9999999999999998876 111 12356899999999999876 999999999999999876210
Q ss_pred cCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeec-CCCceEEEEEccCCCEEEEEeCCCcEEEEecC---
Q 041325 165 SGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVH-HVDTVSALALSSDGSLLYSTSWDRTFKIWRTS--- 240 (450)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--- 240 (450)
.....+.. |...|.+++|+|++++|++++.|+.|++||+.
T Consensus 136 ------------------------------------~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 179 (377)
T 3dwl_C 136 ------------------------------------WVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRD 179 (377)
T ss_dssp ------------------------------------CCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSS
T ss_pred ------------------------------------eeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecc
Confidence 01112234 88899999999999999999999999999985
Q ss_pred ---------------CCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhccc
Q 041325 241 ---------------DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS 305 (450)
Q Consensus 241 ---------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 305 (450)
.++++..+ .|...|.+++|+|++ .+|++++.||.|++||+++++ .....+..+..|..
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~sp~~-~~l~~~~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~ 252 (377)
T 3dwl_C 180 VDAKPEASVWGSRLPFNTVCAEY--PSGGWVHAVGFSPSG-NALAYAGHDSSVTIAYPSAPE----QPPRALITVKLSQL 252 (377)
T ss_dssp CC-CCCSCSSCSCCCEEEEEECC--CCSSSEEEEEECTTS-SCEEEEETTTEEC-CEECSTT----SCEEECCCEECSSS
T ss_pred cCCCccccccccccchhhhhhcc--cCCceEEEEEECCCC-CEEEEEeCCCcEEEEECCCCC----CcceeeEeecCCCC
Confidence 34555555 688999999999854 489999999999999998776 11112667778999
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCce--eeeCCCCCCce----------------------------------
Q 041325 306 AVTALALSTDGTVLYSGACDRSILVWERDQGNY--IVDGDDDSGHM---------------------------------- 349 (450)
Q Consensus 306 ~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~--~~~~~~~~~~~---------------------------------- 349 (450)
.|.+++|+|++++|++|+.++.+ +|+...... ...+.......
T Consensus 253 ~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 331 (377)
T 3dwl_C 253 PLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKG 331 (377)
T ss_dssp CEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC--------------------
T ss_pred ceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhcc
Confidence 99999999999999998866655 776653221 11111000000
Q ss_pred ---eeeccccCCccceEEEEEeCC------eEEEEeCCCeEEEeeC
Q 041325 350 ---VLKGALRGHTKAILCLAVVSN------LLFSGSSDNTIRIWRR 386 (450)
Q Consensus 350 ---~~~~~~~~~~~~v~~~~~~~~------~l~s~~~dg~v~iwd~ 386 (450)
........|...|+++.+.+. .|+||+.||.|++||+
T Consensus 332 ~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 332 SSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp -----CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 011122349999999997532 6999999999999985
No 87
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.9e-34 Score=281.66 Aligned_cols=294 Identities=21% Similarity=0.330 Sum_probs=221.2
Q ss_pred ccCCCccCCCC-CccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEE
Q 041325 13 RNKEPKFQPSS-NHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLY 89 (450)
Q Consensus 13 ~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~ 89 (450)
.+..+.|+|+. ..+.+.+.+..++.-... ........+.+.+. +|...|++++| ++++|+
T Consensus 384 ~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~---------------~~~~~~~~~~~~~~--~h~~~v~~v~~s~~g~~l~ 446 (694)
T 3dm0_A 384 MVTAIATPIDNADIIVSASRDKSIILWKLT---------------KDDKAYGVAQRRLT--GHSHFVEDVVLSSDGQFAL 446 (694)
T ss_dssp CEEEEECCTTCCSEEEEEETTSEEEEEECC---------------CSTTCSCEEEEEEE--CCSSCEEEEEECTTSSEEE
T ss_pred eeEEEEecCCCCCEEEEEeCCCcEEEEEcc---------------CCCcccccccceec--CCCCcEEEEEECCCCCEEE
Confidence 45667788765 455667666666541110 00112234566777 99999999999 799999
Q ss_pred EeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCc
Q 041325 90 GGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGK 167 (450)
Q Consensus 90 tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 167 (450)
+|+.||+|+|||+.++..... +.+|...|.+++|+++. |++++.|++|++||.......
T Consensus 447 sgs~Dg~v~vwd~~~~~~~~~------------~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~------- 507 (694)
T 3dm0_A 447 SGSWDGELRLWDLAAGVSTRR------------FVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKY------- 507 (694)
T ss_dssp EEETTSEEEEEETTTTEEEEE------------EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE-------
T ss_pred EEeCCCcEEEEECCCCcceeE------------EeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcce-------
Confidence 999999999999998876554 77999999999999876 999999999999998654211
Q ss_pred ccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCC--CEEEEEeCCCcEEEEecCCCeEE
Q 041325 168 LKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDG--SLLYSTSWDRTFKIWRTSDFRCL 245 (450)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~ 245 (450)
.... ...+|...|.+++|+|++ ..+++++.|+.|++||+.+++..
T Consensus 508 ---------~~~~------------------------~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~ 554 (694)
T 3dm0_A 508 ---------TISE------------------------GGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLR 554 (694)
T ss_dssp ---------EECS------------------------STTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEE
T ss_pred ---------eecc------------------------CCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEE
Confidence 0000 012588899999999976 68999999999999999999988
Q ss_pred EEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC
Q 041325 246 ESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD 325 (450)
Q Consensus 246 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d 325 (450)
..+. .|...|.+++|+|+ ..+|++|+.||.|++||+++++ .+..+. +...|.+++|+|++.+|++++ +
T Consensus 555 ~~~~-~h~~~v~~v~~spd-g~~l~sg~~Dg~i~iwd~~~~~--------~~~~~~-~~~~v~~~~~sp~~~~l~~~~-~ 622 (694)
T 3dm0_A 555 STLA-GHTGYVSTVAVSPD-GSLCASGGKDGVVLLWDLAEGK--------KLYSLE-ANSVIHALCFSPNRYWLCAAT-E 622 (694)
T ss_dssp EEEC-CCSSCEEEEEECTT-SSEEEEEETTSBCEEEETTTTE--------EEECCB-CSSCEEEEEECSSSSEEEEEE-T
T ss_pred EEEc-CCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEECCCCc--------eEEEec-CCCcEEEEEEcCCCcEEEEEc-C
Confidence 8887 89999999999985 4589999999999999998766 333333 456799999999998887765 5
Q ss_pred CcEEEEEcCCCceeeeCCCCCCceeee------ccccCCccceEEEEEeC--CeEEEEeCCCeEEEeeCC
Q 041325 326 RSILVWERDQGNYIVDGDDDSGHMVLK------GALRGHTKAILCLAVVS--NLLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 326 g~i~vwd~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~ 387 (450)
+.|++||+++++.+..+.......... .....+...+++++|++ ++|++|+.||.|++|++.
T Consensus 623 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 623 HGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp TEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 669999999988765443322111000 01112233478899984 599999999999999986
No 88
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-35 Score=277.65 Aligned_cols=267 Identities=12% Similarity=0.069 Sum_probs=200.3
Q ss_pred eEEeecCCCcceEEEEE--e------CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC
Q 041325 67 ATLKVKGNSSYIPSLAI--A------GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD 138 (450)
Q Consensus 67 ~~l~~~~h~~~v~~~~~--d------~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 138 (450)
.++. +|.+.|.+++| + +.+||+|+.||+|+|||+..+........ ........+.+|...|++++|+++
T Consensus 201 ~~l~--~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~-~~~~p~~~l~~h~~~v~sv~~s~~ 277 (524)
T 2j04_B 201 QTIV--HSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFK-MCEKPSLTLSLADSLITTFDFLSP 277 (524)
T ss_dssp EEEE--ECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEE-CCCSCSEEECCTTTCEEEEEESSS
T ss_pred EEEE--ecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccce-eecCceEEEEcCCCCEEEEEecCC
Confidence 3455 88999999999 3 46999999999999999987653210000 011123357789999999999865
Q ss_pred e-EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEE-
Q 041325 139 K-LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSAL- 216 (450)
Q Consensus 139 ~-l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~- 216 (450)
. |++|+.||+|++||++++.. ....+.+|.+.|.++
T Consensus 278 ~~lasgs~DgtV~lWD~~~~~~------------------------------------------~~~~~~~H~~~V~sv~ 315 (524)
T 2j04_B 278 TTVVCGFKNGFVAEFDLTDPEV------------------------------------------PSFYDQVHDSYILSVS 315 (524)
T ss_dssp SEEEEEETTSEEEEEETTBCSS------------------------------------------CSEEEECSSSCEEEEE
T ss_pred CeEEEEeCCCEEEEEECCCCCC------------------------------------------ceEEeecccccEEEEE
Confidence 5 99999999999999986511 112345799999999
Q ss_pred -EEccCC-CEEEEEeCCCcEEEEecCCCeEEEEeecccc--cceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccc
Q 041325 217 -ALSSDG-SLLYSTSWDRTFKIWRTSDFRCLESVKNAHD--DAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNK 292 (450)
Q Consensus 217 -~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 292 (450)
+|++++ .+|++|+.|++|+|||+++++++..+. .|. ..|.+++|+|+.. .+++++.|+.|++||++++.
T Consensus 316 ~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~-~~~~~~~v~~v~fsp~~~-~l~s~~~d~tv~lwd~~~~~----- 388 (524)
T 2j04_B 316 TAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTV-SRFRGSNLVPVVYCPQIY-SYIYSDGASSLRAVPSRAAF----- 388 (524)
T ss_dssp EECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEE-EECSCCSCCCEEEETTTT-EEEEECSSSEEEEEETTCTT-----
T ss_pred EEcCCCCCeEEEEeccCCeEEEEECCCCCcccccc-cccccCcccceEeCCCcC-eEEEeCCCCcEEEEECcccc-----
Confidence 578887 899999999999999999887766665 343 3588999998544 78999999999999997765
Q ss_pred cchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCc--------------eeeeC--CCCCC---------
Q 041325 293 KHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGN--------------YIVDG--DDDSG--------- 347 (450)
Q Consensus 293 ~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~--------------~~~~~--~~~~~--------- 347 (450)
....+.+|.+.|++++|+|++++|++|+.||+|++||+..+. .+... ..+..
T Consensus 389 ---~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~ 465 (524)
T 2j04_B 389 ---AVHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKYRIDSSYE 465 (524)
T ss_dssp ---CCEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEEEECCCCC
T ss_pred ---cceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeEEccCCce
Confidence 445667899999999999999999999999999999975321 11111 11110
Q ss_pred ------ceeeeccccCCccceEEEEEeCC-----eEEEEeCCCeEEEeeCCC
Q 041325 348 ------HMVLKGALRGHTKAILCLAVVSN-----LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 348 ------~~~~~~~~~~~~~~v~~~~~~~~-----~l~s~~~dg~v~iwd~~~ 388 (450)
.......+.+|...|.+++|+++ .+++|+.||.|+||++.-
T Consensus 466 ~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 466 VYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred ecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 01233456789999999999976 899999999999999874
No 89
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=1.2e-34 Score=262.51 Aligned_cols=269 Identities=14% Similarity=0.254 Sum_probs=213.3
Q ss_pred EEecCCCceEEEEEeCC----e--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCce
Q 041325 122 VATGNGDAVKSLVVLGD----K--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNY 195 (450)
Q Consensus 122 ~~~~h~~~v~~l~~~~~----~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (450)
...+|.++|.+++|+|+ . +++++.++.|++||+.++.... .+...
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~-------------~~~~~---------------- 63 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIR-------------LLQSY---------------- 63 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEE-------------EEEEE----------------
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEE-------------eeeec----------------
Confidence 35589999999999973 2 7777888899999998763211 00000
Q ss_pred EEEeecceeeeecCCCceEEEEEccC----CCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEE
Q 041325 196 VQVRRHKKCTWVHHVDTVSALALSSD----GSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYT 271 (450)
Q Consensus 196 ~~~~~~~~~~~~~~~~~v~~~~~~~~----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 271 (450)
....|...|.+++|+|+ +++|++|+.||.|++||+.+++.+..+. .|...|.+++|+|.+..+|++
T Consensus 64 ---------~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~s 133 (366)
T 3k26_A 64 ---------VDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYV-GHGNAINELKFHPRDPNLLLS 133 (366)
T ss_dssp ---------ECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEE-SCCSCEEEEEECSSCTTEEEE
T ss_pred ---------cccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeec-CCCCcEEEEEECCCCCCEEEE
Confidence 01137788999999998 6799999999999999999999998888 899999999999855669999
Q ss_pred EcCCCcEEEEeCcchhhhccccchhhhhH---hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCC----
Q 041325 272 GSADTKIKVWKKLRAALQVNKKHSLVQTL---EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDD---- 344 (450)
Q Consensus 272 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~---- 344 (450)
++.||.|++||+++++ ....+ ..|...|.+++|+|++++|++++.||.|++||+++++....+..
T Consensus 134 ~~~dg~i~iwd~~~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 205 (366)
T 3k26_A 134 VSKDHALRLWNIQTDT--------LVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDY 205 (366)
T ss_dssp EETTSCEEEEETTTTE--------EEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTC
T ss_pred EeCCCeEEEEEeecCe--------EEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEe
Confidence 9999999999998765 33333 67899999999999999999999999999999997654311100
Q ss_pred -----------CCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCCCcc------ccCCCceeEEEecCCC
Q 041325 345 -----------DSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVT------DHQKGYSCLAVLEGHR 407 (450)
Q Consensus 345 -----------~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~------~~~~~~~~~~~~~~h~ 407 (450)
.............|...|.+++|+++++++++.||.|++||+.+... ........+..+.+|.
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (366)
T 3k26_A 206 NPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWLGDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ 285 (366)
T ss_dssp CGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEETTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS
T ss_pred cCCCCcccccceeeccCccccccCCcceEEEEEEcCCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccC
Confidence 00000111233458999999999999999999999999999986532 1112235678889999
Q ss_pred cceEEEEEEec--CCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 408 RPVKCLTAVVD--SDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 408 ~~v~~l~~~~~--~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
..|++++|+|+ +. +|++|+.||.|++||++
T Consensus 286 ~~v~~~~~s~~~~~~-------------~l~~~~~dg~i~vwd~~ 317 (366)
T 3k26_A 286 CDIWYMRFSMDFWQK-------------MLALGNQVGKLYVWDLE 317 (366)
T ss_dssp CCSSCCCCEECTTSS-------------EEEEECTTSCEEEEECC
T ss_pred CcEEEEEEcCCCCCc-------------EEEEEecCCcEEEEECC
Confidence 99999999999 88 99999999999999974
No 90
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=6.4e-34 Score=256.74 Aligned_cols=299 Identities=14% Similarity=0.131 Sum_probs=210.8
Q ss_pred cCCCccCCCCCcccccccccc-------CCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEEeCC
Q 041325 14 NKEPKFQPSSNHLQSELSNAS-------LSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAIAGK 86 (450)
Q Consensus 14 ~~~~~~~p~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~d~~ 86 (450)
+.++.|+|++..+.++....+ ++.-.. .. ..............+.+.+|...|.+++++++
T Consensus 17 V~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~-------~~-----~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~~~ 84 (365)
T 4h5i_A 17 AYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRV-------DP-----TKDTEKEQFHILSEFALEDNDDSPTAIDASKG 84 (365)
T ss_dssp EEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEE-------CT-----TSSSHHHHEEEEEEEECCTTSCCCCEEEEETT
T ss_pred EEEEEEeCCCcEEEEECCCccccCCCCEEEEEEE-------cC-----CCcceeeeeeeeeEEEccCCCCceEEEEeCCC
Confidence 457889999998888643222 221000 00 00011112233444555699999999999999
Q ss_pred EEEEee-----------CCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EE--EEeCCCeEEE
Q 041325 87 LLYGGS-----------SNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LF--SAHQDHKIRV 151 (450)
Q Consensus 87 ~l~tgs-----------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~--s~~~dg~i~i 151 (450)
.+++|. .|+.+|+|++.............. ......+...+.+++|+||+ ++ +++.|++|++
T Consensus 85 ~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~i 161 (365)
T 4h5i_A 85 IILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVD---FDASTNADDYTKLVYISREGTVAAIASSKVPAIMRI 161 (365)
T ss_dssp EEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEEC---SSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEE
T ss_pred EEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeec---eeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEE
Confidence 988875 467788888765442211100000 00123455678999999987 44 5557999999
Q ss_pred EEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCC
Q 041325 152 WKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWD 231 (450)
Q Consensus 152 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 231 (450)
||+++.+. +..+ .|.+.|.+++|+|+|+++++++.+
T Consensus 162 wd~~~~~~----------------~~~~----------------------------~~~~~V~~v~fspdg~~l~s~s~~ 197 (365)
T 4h5i_A 162 IDPSDLTE----------------KFEI----------------------------ETRGEVKDLHFSTDGKVVAYITGS 197 (365)
T ss_dssp EETTTTEE----------------EEEE----------------------------ECSSCCCEEEECTTSSEEEEECSS
T ss_pred eECCCCcE----------------EEEe----------------------------CCCCceEEEEEccCCceEEeccce
Confidence 99998732 1111 377789999999999999999854
Q ss_pred CcEEEEecCCCeEEE-EeecccccceEEEEEeecCCcEEEEEcCCC----cEEEEeCcchhhhccccchhhhhHhhcccc
Q 041325 232 RTFKIWRTSDFRCLE-SVKNAHDDAINAIVVSKSNDGFVYTGSADT----KIKVWKKLRAALQVNKKHSLVQTLEKHKSA 306 (450)
Q Consensus 232 g~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 306 (450)
.+++|+..+++.+. .....|...|.+++|+|+ +..+++++.|+ .+++|++.... ........+.+|...
T Consensus 198 -~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspd-g~~l~~~s~d~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~ 271 (365)
T 4h5i_A 198 -SLEVISTVTGSCIARKTDFDKNWSLSKINFIAD-DTVLIAASLKKGKGIVLTKISIKSGN----TSVLRSKQVTNRFKG 271 (365)
T ss_dssp -CEEEEETTTCCEEEEECCCCTTEEEEEEEEEET-TEEEEEEEESSSCCEEEEEEEEETTE----EEEEEEEEEESSCSC
T ss_pred -eEEEEEeccCcceeeeecCCCCCCEEEEEEcCC-CCEEEEEecCCcceeEEeecccccce----ecceeeeeecCCCCC
Confidence 56666666666554 333468889999999994 44788887776 68888876544 112223456678899
Q ss_pred eEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEe
Q 041325 307 VTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIW 384 (450)
Q Consensus 307 i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iw 384 (450)
|++++|+|||++|++|+.|+.|+|||+++++++. ..+.+|...|++++|+++ +|++||.|++|+||
T Consensus 272 V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~------------~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw 339 (365)
T 4h5i_A 272 ITSMDVDMKGELAVLASNDNSIALVKLKDLSMSK------------IFKQAHSFAITEVTISPDSTYVASVSAANTIHII 339 (365)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE------------EETTSSSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred eEeEEECCCCCceEEEcCCCEEEEEECCCCcEEE------------EecCcccCCEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 9999999999999999999999999999987652 235789999999999955 99999999999999
Q ss_pred eCCCC
Q 041325 385 RRSSS 389 (450)
Q Consensus 385 d~~~~ 389 (450)
|+...
T Consensus 340 ~ip~~ 344 (365)
T 4h5i_A 340 KLPLN 344 (365)
T ss_dssp ECCTT
T ss_pred EcCCC
Confidence 99754
No 91
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=2.9e-34 Score=263.18 Aligned_cols=247 Identities=13% Similarity=0.193 Sum_probs=206.2
Q ss_pred EEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeec
Q 041325 122 VATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRH 201 (450)
Q Consensus 122 ~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (450)
.+.+|.+.|++++|+++.|++|+.||.|++||+....... . ..
T Consensus 11 ~~~~h~~~i~~~~~~~~~l~s~~~dg~i~iw~~~~~~~~~----------------~---------------------~~ 53 (397)
T 1sq9_A 11 AGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNEN----------------P---------------------KD 53 (397)
T ss_dssp ESSCSSSCEEEEEECSSEEEEEETTSEEEEEESBCCTTCC----------------G---------------------GG
T ss_pred hhhhhhcCeEEEEecCCeEEEEcCCCEEEEEECCCccccc----------------C---------------------CC
Confidence 3568999999999999889999999999999998873100 0 01
Q ss_pred ceeeeecCCCceEEEEEccC----C---CEEEEEeCCCcEEEEecCCCeE-----EEEeeccc-----ccceEEEEEe--
Q 041325 202 KKCTWVHHVDTVSALALSSD----G---SLLYSTSWDRTFKIWRTSDFRC-----LESVKNAH-----DDAINAIVVS-- 262 (450)
Q Consensus 202 ~~~~~~~~~~~v~~~~~~~~----~---~~l~~~~~dg~i~iwd~~~~~~-----~~~~~~~~-----~~~v~~~~~~-- 262 (450)
....+.+|...|.+++|+|+ + ++|++++.||.|++||+.+++. +..+. .| ...|.+++|+
T Consensus 54 ~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~ 132 (397)
T 1sq9_A 54 KSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLD-LLDSDMKKHSFWALKWGAS 132 (397)
T ss_dssp GEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEEC-CSCTTGGGSCEEEEEEECC
T ss_pred cceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeec-ccccccCCCcEEEEEEeec
Confidence 22344579999999999999 9 9999999999999999998776 66666 56 5899999999
Q ss_pred --ecCCcE-EEEEcCCCcEEEEeCcc------hhhhccccchhhh-----hH-------hhcccceEEEEEcCCCCEEEE
Q 041325 263 --KSNDGF-VYTGSADTKIKVWKKLR------AALQVNKKHSLVQ-----TL-------EKHKSAVTALALSTDGTVLYS 321 (450)
Q Consensus 263 --~~~~~~-l~~~~~dg~i~vwd~~~------~~~~~~~~~~~~~-----~~-------~~~~~~i~~l~~~~~~~~l~~ 321 (450)
|++. + |++++.||.|++||++. ++ .+. .+ ..|...|.+++|+|++ +|++
T Consensus 133 ~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~ 202 (397)
T 1sq9_A 133 NDRLLS-HRLVATDVKGTTYIWKFHPFADESNSL--------TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIAT 202 (397)
T ss_dssp C----C-EEEEEEETTSCEEEEEEESSSSHHHHT--------TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEE
T ss_pred cCCCCc-eEEEEEeCCCcEEEEeCCccccccccc--------eeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEE
Confidence 8554 7 99999999999999987 44 222 44 3478899999999999 9999
Q ss_pred eeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccC---C---ccceEEEEEeC--CeEEEEeCC---CeEEEeeCCCCc
Q 041325 322 GACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG---H---TKAILCLAVVS--NLLFSGSSD---NTIRIWRRSSSV 390 (450)
Q Consensus 322 g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~---~---~~~v~~~~~~~--~~l~s~~~d---g~v~iwd~~~~~ 390 (450)
++.||.|++||+++++.+ ..+.. | ...|.+++|++ ++|++++.| |.|++||+.++
T Consensus 203 ~~~dg~i~i~d~~~~~~~-------------~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~- 268 (397)
T 1sq9_A 203 GFNNGTVQISELSTLRPL-------------YNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG- 268 (397)
T ss_dssp ECTTSEEEEEETTTTEEE-------------EEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC-
T ss_pred EeCCCcEEEEECCCCcee-------------EEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC-
Confidence 999999999999987655 44555 8 89999999984 599999999 99999999874
Q ss_pred cccCCCceeEEEecC-------------CCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 391 TDHQKGYSCLAVLEG-------------HRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 391 ~~~~~~~~~~~~~~~-------------h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+.+..+.+ |...|.+++|+|++. +|++++.||.|++||++
T Consensus 269 -------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-------------~l~~~~~dg~i~iwd~~ 321 (397)
T 1sq9_A 269 -------ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE-------------TLCSAGWDGKLRFWDVK 321 (397)
T ss_dssp -------CEEEEECBC--------CCBSBSSCEEEEEECSSSS-------------EEEEEETTSEEEEEETT
T ss_pred -------cccceeccCcccccccccccccCCcEEEEEECCCCC-------------EEEEEeCCCeEEEEEcC
Confidence 66777887 999999999999999 99999999999999974
No 92
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=1.7e-33 Score=252.45 Aligned_cols=290 Identities=19% Similarity=0.346 Sum_probs=224.0
Q ss_pred ccCCCccCCCC-CccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEE
Q 041325 13 RNKEPKFQPSS-NHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLY 89 (450)
Q Consensus 13 ~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~ 89 (450)
.+..+.|+|+. ..+.+.+.+..++.= ...........+.++++ +|...|++++| |+++|+
T Consensus 40 ~V~~v~~sp~~~~~l~S~s~D~~i~vW---------------d~~~~~~~~~~~~~~l~--~h~~~V~~~~~s~dg~~l~ 102 (340)
T 4aow_A 40 WVTQIATTPQFPDMILSASRDKTIIMW---------------KLTRDETNYGIPQRALR--GHSHFVSDVVISSDGQFAL 102 (340)
T ss_dssp CEEEEEECTTCTTEEEEEETTSCEEEE---------------EECCSSSCSEEEEEEEC--CCSSCEEEEEECTTSSEEE
T ss_pred CEEEEEEeCCCCCEEEEEcCCCeEEEE---------------ECCCCCcccceeeEEEe--CCCCCEEEEEECCCCCEEE
Confidence 56778888874 566677777766541 11111223345677787 99999999999 799999
Q ss_pred EeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCc
Q 041325 90 GGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGK 167 (450)
Q Consensus 90 tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~ 167 (450)
+|+.||.|++|+......... ...+...+..+.+.++. |++++.|+.+++||+......
T Consensus 103 s~~~d~~i~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~------- 163 (340)
T 4aow_A 103 SGSWDGTLRLWDLTTGTTTRR------------FVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKY------- 163 (340)
T ss_dssp EEETTSEEEEEETTTTEEEEE------------EECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEE-------
T ss_pred EEcccccceEEeecccceeee------------ecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceE-------
Confidence 999999999999988775554 55677788888888665 999999999999998766211
Q ss_pred ccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC--CCEEEEEeCCCcEEEEecCCCeEE
Q 041325 168 LKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD--GSLLYSTSWDRTFKIWRTSDFRCL 245 (450)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~ 245 (450)
.....+|...+.+++|+++ ..++++++.|+.|++||+.+++.+
T Consensus 164 -----------------------------------~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~ 208 (340)
T 4aow_A 164 -----------------------------------TVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLK 208 (340)
T ss_dssp -----------------------------------EECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEE
T ss_pred -----------------------------------EEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCcee
Confidence 1112358889999999885 457889999999999999999999
Q ss_pred EEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC
Q 041325 246 ESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD 325 (450)
Q Consensus 246 ~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d 325 (450)
..+. .|...|.+++|+|+ ..+|++|+.||.|++||+++.+ .+..+. +...+.+++|+|++.+ ++++.|
T Consensus 209 ~~~~-~h~~~v~~~~~s~~-~~~l~s~s~Dg~i~iwd~~~~~--------~~~~~~-~~~~v~~~~~~~~~~~-~~~~~d 276 (340)
T 4aow_A 209 TNHI-GHTGYLNTVTVSPD-GSLCASGGKDGQAMLWDLNEGK--------HLYTLD-GGDIINALCFSPNRYW-LCAATG 276 (340)
T ss_dssp EEEC-CCSSCEEEEEECTT-SSEEEEEETTCEEEEEETTTTE--------EEEEEE-CSSCEEEEEECSSSSE-EEEEET
T ss_pred eEec-CCCCcEEEEEECCC-CCEEEEEeCCCeEEEEEeccCc--------eeeeec-CCceEEeeecCCCCce-eeccCC
Confidence 8887 89999999999984 4589999999999999997765 344443 4568999999998765 556679
Q ss_pred CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCCC
Q 041325 326 RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 326 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~ 389 (450)
+.|++||++++..+..+.... ......+|...|++++|+++ +|++|+.||.|+|||+++|
T Consensus 277 ~~i~iwd~~~~~~~~~~~~~~----~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 277 PSIKIWDLEGKIIVDELKQEV----ISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp TEEEEEETTTTEEEEEECCC-----------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred CEEEEEECCCCeEEEeccccc----eeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 999999999887664433221 12345678999999999854 9999999999999999876
No 93
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=100.00 E-value=5.5e-34 Score=256.40 Aligned_cols=293 Identities=10% Similarity=0.110 Sum_probs=200.3
Q ss_pred CccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC
Q 041325 60 ASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG 137 (450)
Q Consensus 60 ~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 137 (450)
..+.+++++++ +|...|++++| ||++|++|+.|| ++||++++.+.... .+...+..+++.+
T Consensus 6 ~~~~~~~~~~~--~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~--------------~~~~~~~~~~~~~ 68 (355)
T 3vu4_A 6 MITRNPIVPEN--HVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMS--------------QEMRHLSKVRMLH 68 (355)
T ss_dssp ---------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEE--------------EECSCCCEEEECT
T ss_pred ccccCCccccc--cCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeee--------------eecCCeEEEEEcC
Confidence 34445666666 99999999999 799999998875 78999876654332 1112466666654
Q ss_pred --CeE-EEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceE
Q 041325 138 --DKL-FSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVS 214 (450)
Q Consensus 138 --~~l-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 214 (450)
+.+ ++++.|++|++||+.+++. +..+ .+...|.
T Consensus 69 ~~~~~~~~~~~d~~v~iWd~~~~~~----------------~~~~----------------------------~~~~~v~ 104 (355)
T 3vu4_A 69 RTNYVAFVTGVKEVVHIWDDVKKQD----------------VSRI----------------------------KVDAPVK 104 (355)
T ss_dssp TSSEEEEECSSTTEEEEEETTTTEE----------------EEEE----------------------------ECSSCEE
T ss_pred CCCEEEEEECCccEEEEEECCCCcE----------------EEEE----------------------------ECCCceE
Confidence 444 6788899999999998832 2221 2556899
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEecCCC-eEEEEeecccccceEEEEEeecCCcEEEE--EcCCCcEEEEeCcchhhhcc
Q 041325 215 ALALSSDGSLLYSTSWDRTFKIWRTSDF-RCLESVKNAHDDAINAIVVSKSNDGFVYT--GSADTKIKVWKKLRAALQVN 291 (450)
Q Consensus 215 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~--~~~dg~i~vwd~~~~~~~~~ 291 (450)
+++++++. ++++. |+.|++||+.++ +.+..+.. ....+++++ .+++. |+.||.|++||+.++.....
T Consensus 105 ~v~~~~~~--~~~~~-~~~i~i~d~~~~~~~~~~~~~----~~~~~~~s~---~~la~~sg~~~g~v~iwd~~~~~~~~~ 174 (355)
T 3vu4_A 105 DLFLSREF--IVVSY-GDVISVFKFGNPWKRITDDIR----FGGVCEFSN---GLLVYSNEFNLGQIHITKLQSSGSATT 174 (355)
T ss_dssp EEEECSSE--EEEEE-TTEEEEEESSTTCCBSSCCEE----EEEEEEEET---TEEEEEESSCTTCEEEEECCC------
T ss_pred EEEEcCCE--EEEEE-cCEEEEEECCCCceeeEEecc----CCceEEEEc---cEEEEeCCCcCcEEEEEECCCCCcccc
Confidence 99998764 44443 789999999988 76666652 444455664 35554 68999999999976431100
Q ss_pred cc-------chh-hhhHhhcccceEEEEEcCCCCEEEEeeCCCc-EEEEEcCCCceeeeCCCCCCceeeecccc-C-Ccc
Q 041325 292 KK-------HSL-VQTLEKHKSAVTALALSTDGTVLYSGACDRS-ILVWERDQGNYIVDGDDDSGHMVLKGALR-G-HTK 360 (450)
Q Consensus 292 ~~-------~~~-~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~ 360 (450)
.. ..+ +..+.+|...|++++|+|+|++|++|+.||+ |++||+++++.+ ..+. + |..
T Consensus 175 ~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~-------------~~~~~g~h~~ 241 (355)
T 3vu4_A 175 QDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLV-------------REFRRGLDRA 241 (355)
T ss_dssp ------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEE-------------EEEECTTCCS
T ss_pred ccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE-------------EEEEcCCCCC
Confidence 00 011 5667889999999999999999999999998 999999988765 3444 4 899
Q ss_pred ceEEEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCCc---------------eeEEEecCCCcceEEEEEEecCCCCC
Q 041325 361 AILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGY---------------SCLAVLEGHRRPVKCLTAVVDSDYSN 423 (450)
Q Consensus 361 ~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~---------------~~~~~~~~h~~~v~~l~~~~~~~~~~ 423 (450)
.|.+++|++ ++|++++.|+.|++||++.+........ ........+..+...++|++++.
T Consensus 242 ~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~--- 318 (355)
T 3vu4_A 242 DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESS--- 318 (355)
T ss_dssp CEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSE---
T ss_pred cEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCC---
Confidence 999999985 4999999999999999986422111000 00001111222346688998888
Q ss_pred CCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 424 RNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 424 ~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+|++++.||.+++|++
T Consensus 319 ----------~l~~~~~dg~~~~~~~ 334 (355)
T 3vu4_A 319 ----------LVVVWPHTRMIETFKV 334 (355)
T ss_dssp ----------EEEEETTTTEEEEEEE
T ss_pred ----------EEEEEeCCCeEEEEEE
Confidence 9999999999999987
No 94
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.4e-33 Score=256.25 Aligned_cols=260 Identities=13% Similarity=0.117 Sum_probs=206.0
Q ss_pred EecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEee
Q 041325 123 ATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRR 200 (450)
Q Consensus 123 ~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (450)
+..|.++|.+++|+++. |++++.|+.|++||+.+++.
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~----------------------------------------- 42 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW----------------------------------------- 42 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE-----------------------------------------
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcE-----------------------------------------
Confidence 45689999999999886 88999999999999987721
Q ss_pred cceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEee-cccccceEEEEEeecCCcEEEEEcCCCcEE
Q 041325 201 HKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVK-NAHDDAINAIVVSKSNDGFVYTGSADTKIK 279 (450)
Q Consensus 201 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 279 (450)
.....+.+|...|.+++|+|++++|++++.||.|++||+.+++....+. ..|...|.+++|+|+ ..++++++.||.|+
T Consensus 43 ~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~v~ 121 (372)
T 1k8k_C 43 VQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPN-EKKFAVGSGSRVIS 121 (372)
T ss_dssp EEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTT-SSEEEEEETTSSEE
T ss_pred EeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCC-CCEEEEEeCCCEEE
Confidence 0122344689999999999999999999999999999999887554442 368889999999985 45899999999999
Q ss_pred EEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCC-----CCCCceeeecc
Q 041325 280 VWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGD-----DDSGHMVLKGA 354 (450)
Q Consensus 280 vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~-----~~~~~~~~~~~ 354 (450)
+||++.... ..........|...|.+++|+|++++|++++.||.|++||++......... ...........
T Consensus 122 i~d~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (372)
T 1k8k_C 122 ICYFEQEND----WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFE 197 (372)
T ss_dssp EEEEETTTT----EEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEE
T ss_pred EEEecCCCc----ceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEe
Confidence 999976541 111122235678999999999999999999999999999975321100000 00001123356
Q ss_pred ccCCccceEEEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCce
Q 041325 355 LRGHTKAILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTS 432 (450)
Q Consensus 355 ~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~ 432 (450)
+..|...|.+++|++ ++|++++.||.|++||++++ +++..+..|..+|.+++|+|++.
T Consensus 198 ~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--------~~~~~~~~~~~~v~~~~~~~~~~------------ 257 (372)
T 1k8k_C 198 SSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK--------MAVATLASETLPLLAVTFITESS------------ 257 (372)
T ss_dssp CCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT--------TEEEEEECSSCCEEEEEEEETTE------------
T ss_pred cCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC--------ceeEEEccCCCCeEEEEEecCCC------------
Confidence 668999999999974 49999999999999999874 67888889999999999999998
Q ss_pred EEEEEcccCCcEEEEEeC
Q 041325 433 FLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 433 ~~l~s~~~Dg~i~iw~l~ 450 (450)
+|++| .|+.|++|+++
T Consensus 258 -~l~~~-~d~~i~i~~~~ 273 (372)
T 1k8k_C 258 -LVAAG-HDCFPVLFTYD 273 (372)
T ss_dssp -EEEEE-TTSSCEEEEEE
T ss_pred -EEEEE-eCCeEEEEEcc
Confidence 78777 89999999973
No 95
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.9e-34 Score=254.27 Aligned_cols=271 Identities=8% Similarity=0.011 Sum_probs=198.5
Q ss_pred eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEe
Q 041325 84 AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYS 163 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 163 (450)
++++|++|+.||.|++||+.+++...... ...|.++.++|+ +++++.|++|++|+.......
T Consensus 47 d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--------------~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~--- 108 (343)
T 3lrv_A 47 DKWVCMCRCEDGALHFTQLKDSKTITTIT--------------TPNPRTGGEHPA-IISRGPCNRLLLLYPGNQITI--- 108 (343)
T ss_dssp EEEEEEEEEETTEEEEEEESSSSCEEEEE--------------EECCCTTCCCCS-EEEECSTTEEEEEETTTEEEE---
T ss_pred CCCEEEEECCCCcEEEEECCCCcEEEEEe--------------cCCceeeeeCCc-eEEecCCCeEEEEEccCceEE---
Confidence 78999999999999999999888665522 346777888888 999999999999998754111
Q ss_pred ccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc--CCCEEEEEeCCCcEEEEecCC
Q 041325 164 TSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS--DGSLLYSTSWDRTFKIWRTSD 241 (450)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~ 241 (450)
...... . .......+|.+.|.+++|+| +++++++++.||.|++||+++
T Consensus 109 -------------~~~~~~--~---------------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~ 158 (343)
T 3lrv_A 109 -------------LDSKTN--K---------------VLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYED 158 (343)
T ss_dssp -------------EETTTC--C---------------EEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSS
T ss_pred -------------eecCCc--c---------------eeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCC
Confidence 000000 0 00001124678899999999 999999999999999999999
Q ss_pred CeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhh-hhHhh-cccceEEEEEcCCCCEE
Q 041325 242 FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLV-QTLEK-HKSAVTALALSTDGTVL 319 (450)
Q Consensus 242 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~-~~~~i~~l~~~~~~~~l 319 (450)
++.+......+...+.+++|+|+ ..++++|+.||.|++||+++++ .. ..+.. |...|++++|+|++++|
T Consensus 159 ~~~~~~~~~~~~~~i~~~~~~pd-g~~lasg~~dg~i~iwd~~~~~--------~~~~~~~~~h~~~v~~l~fs~~g~~l 229 (343)
T 3lrv_A 159 DSQYIVHSAKSDVEYSSGVLHKD-SLLLALYSPDGILDVYNLSSPD--------QASSRFPVDEEAKIKEVKFADNGYWM 229 (343)
T ss_dssp SCEEEEECCCSSCCCCEEEECTT-SCEEEEECTTSCEEEEESSCTT--------SCCEECCCCTTSCEEEEEECTTSSEE
T ss_pred CcEEEEEecCCCCceEEEEECCC-CCEEEEEcCCCEEEEEECCCCC--------CCccEEeccCCCCEEEEEEeCCCCEE
Confidence 99877665456678999999984 4589999999999999998776 33 44555 89999999999999999
Q ss_pred EEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccce--EEEEEe--CCeEEEEeC-CCeEEEeeCCCCccccC
Q 041325 320 YSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI--LCLAVV--SNLLFSGSS-DNTIRIWRRSSSVTDHQ 394 (450)
Q Consensus 320 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~--~~~l~s~~~-dg~v~iwd~~~~~~~~~ 394 (450)
++++ |+.|++||+++++.+..+ ..+..|...+ .+++|+ +++|++++. |+.|++|++... .
T Consensus 230 ~s~~-~~~v~iwd~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~----~ 294 (343)
T 3lrv_A 230 VVEC-DQTVVCFDLRKDVGTLAY----------PTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKK----T 294 (343)
T ss_dssp EEEE-SSBEEEEETTSSTTCBSS----------CCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTT----T
T ss_pred EEEe-CCeEEEEEcCCCCcceee----------cccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEccc----c
Confidence 9999 559999999987644211 1111233333 368887 459999888 999999999754 2
Q ss_pred CCceeEEEecCCCcceEEEEEEe---cCCCCCCCCCCCCceEEEEEcccCCcEEEE
Q 041325 395 KGYSCLAVLEGHRRPVKCLTAVV---DSDYSNRNSDHSSTSFLVYSGSLDCEIKIW 447 (450)
Q Consensus 395 ~~~~~~~~~~~h~~~v~~l~~~~---~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw 447 (450)
+.+.. .++..+.|.+ +.. .+++++.||.+.++
T Consensus 295 ~~~~~--------~~~~~~~~~~~~~~~~-------------~l~~~~~d~~~~~~ 329 (343)
T 3lrv_A 295 KNWTK--------DEESALCLQSDTADFT-------------DMDVVCGDGGIAAI 329 (343)
T ss_dssp CSEEE--------EEEEECCC----CCCC-------------EEEEEEETTEEEEE
T ss_pred cceEe--------cCceeEecCccccccc-------------eeEEEecCCceEEE
Confidence 22222 4566677776 555 67777777777765
No 96
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-34 Score=266.39 Aligned_cols=246 Identities=12% Similarity=0.228 Sum_probs=190.3
Q ss_pred ecCCCceEEEEEeC-Ce--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEee
Q 041325 124 TGNGDAVKSLVVLG-DK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRR 200 (450)
Q Consensus 124 ~~h~~~v~~l~~~~-~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (450)
.+|.+.|++++|++ +. |++|+.||+|++||+.+.... ...
T Consensus 60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~-------------~~~------------------------ 102 (437)
T 3gre_A 60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG-------------EVY------------------------ 102 (437)
T ss_dssp TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT-------------CCC------------------------
T ss_pred cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccC-------------ccc------------------------
Confidence 68999999999999 65 999999999999998762100 000
Q ss_pred cceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecC---CCeEEEEee--------c-c--cccceEEEEEeec-C
Q 041325 201 HKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTS---DFRCLESVK--------N-A--HDDAINAIVVSKS-N 265 (450)
Q Consensus 201 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~~~~~~~--------~-~--~~~~v~~~~~~~~-~ 265 (450)
... ...+|...|.+++|+|++++|++++.||.|++||+. +++...... . . +...+.++.+... +
T Consensus 103 ~~~-~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 181 (437)
T 3gre_A 103 SSS-LTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEE 181 (437)
T ss_dssp SCS-EEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSS
T ss_pred cee-eeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCC
Confidence 000 111488999999999999999999999999999995 444433322 0 1 4455666664321 3
Q ss_pred CcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhh--cccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCC
Q 041325 266 DGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEK--HKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGD 343 (450)
Q Consensus 266 ~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 343 (450)
..++++++.||.|++||+++++ .+..+.. |...|++++|+|++++|++|+.||.|++||+++++.+
T Consensus 182 ~~~l~~~~~d~~i~iwd~~~~~--------~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~---- 249 (437)
T 3gre_A 182 KSLLVALTNLSRVIIFDIRTLE--------RLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLI---- 249 (437)
T ss_dssp CEEEEEEETTSEEEEEETTTCC--------EEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEE----
T ss_pred CCEEEEEeCCCeEEEEeCCCCe--------eeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEE----
Confidence 4589999999999999997766 5555655 7899999999999999999999999999999987655
Q ss_pred CCCCceeeecccc-CCccceEEEEEeCC------eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecC-----------
Q 041325 344 DDSGHMVLKGALR-GHTKAILCLAVVSN------LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG----------- 405 (450)
Q Consensus 344 ~~~~~~~~~~~~~-~~~~~v~~~~~~~~------~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~----------- 405 (450)
..+. .|...|.++++.+. +|++|+.||.|++||++++ +++..+.+
T Consensus 250 ---------~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~--------~~~~~~~~~~~~~~~~~~~ 312 (437)
T 3gre_A 250 ---------RSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG--------HCQYAFINSDEQPSMEHFL 312 (437)
T ss_dssp ---------EEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT--------EEEEEEESSSSCCCGGGGS
T ss_pred ---------EEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC--------cEEEEEEcCCCCCccceec
Confidence 3333 67789999977643 8999999999999999875 34444433
Q ss_pred ---------------CCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 406 ---------------HRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 406 ---------------h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
|...|++++|+ ++. +|++|+.||.|++||++
T Consensus 313 ~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~-------------~l~s~~~d~~i~~wd~~ 358 (437)
T 3gre_A 313 PIEKGLEELNFCGIRSLNALSTISVS-NDK-------------ILLTDEATSSIVMFSLN 358 (437)
T ss_dssp CBCSSGGGCCCCCCCSGGGGCCEEEE-TTE-------------EEEEEGGGTEEEEEETT
T ss_pred ccccccccceecccccCCceEEEEEC-Cce-------------EEEecCCCCeEEEEECC
Confidence 66667788887 556 89999999999999974
No 97
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.8e-33 Score=253.82 Aligned_cols=286 Identities=16% Similarity=0.215 Sum_probs=228.8
Q ss_pred ccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEE
Q 041325 13 RNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYG 90 (450)
Q Consensus 13 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~t 90 (450)
.+..+.|+|+...+.+...+..+ ..+...+++++.++. +|...|++++| ++++|++
T Consensus 34 ~v~~~~~s~~~~~l~~~~~dg~i--------------------~vwd~~~~~~~~~~~--~h~~~v~~~~~~~~~~~l~s 91 (369)
T 3zwl_B 34 PLTQVKYNKEGDLLFSCSKDSSA--------------------SVWYSLNGERLGTLD--GHTGTIWSIDVDCFTKYCVT 91 (369)
T ss_dssp CEEEEEECTTSCEEEEEESSSCE--------------------EEEETTTCCEEEEEC--CCSSCEEEEEECTTSSEEEE
T ss_pred eEEEEEEcCCCCEEEEEeCCCEE--------------------EEEeCCCchhhhhhh--hcCCcEEEEEEcCCCCEEEE
Confidence 45566666666666655444333 334445567888888 99999999999 6999999
Q ss_pred eeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCC-----CeEEEEEcCCCceeEEe
Q 041325 91 GSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQD-----HKIRVWKIDNNTSAYYS 163 (450)
Q Consensus 91 gs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d-----g~i~iw~~~~~~~~~~~ 163 (450)
++.||.|++||+.+++.... +. |...|.+++|+++. +++++.+ |.|++||+.........
T Consensus 92 ~~~dg~i~iwd~~~~~~~~~------------~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~ 158 (369)
T 3zwl_B 92 GSADYSIKLWDVSNGQCVAT------------WK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHEL 158 (369)
T ss_dssp EETTTEEEEEETTTCCEEEE------------EE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCE
T ss_pred EeCCCeEEEEECCCCcEEEE------------ee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceee
Confidence 99999999999998886655 33 77899999999877 8888888 99999999876321000
Q ss_pred ccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCC--ceEEEEEccCCCEEEEEeCCCcEEEEecCC
Q 041325 164 TSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVD--TVSALALSSDGSLLYSTSWDRTFKIWRTSD 241 (450)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 241 (450)
. .........+..|.. .+.+++|+|++++|++++.||.|++||+.+
T Consensus 159 -------------~-------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 206 (369)
T 3zwl_B 159 -------------T-------------------KVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSN 206 (369)
T ss_dssp -------------E-------------------EECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred -------------c-------------------ccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCC
Confidence 0 001112223345655 899999999999999999999999999998
Q ss_pred -CeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEE
Q 041325 242 -FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLY 320 (450)
Q Consensus 242 -~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~ 320 (450)
++.+..+. .|...|.+++|+|+ ..+|++++.||.|++||+++++ ....+. +...+..++|+|++++++
T Consensus 207 ~~~~~~~~~-~~~~~v~~~~~~~~-~~~l~~~~~d~~i~v~d~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~l~ 275 (369)
T 3zwl_B 207 NYEYVDSID-LHEKSISDMQFSPD-LTYFITSSRDTNSFLVDVSTLQ--------VLKKYE-TDCPLNTAVITPLKEFII 275 (369)
T ss_dssp TTEEEEEEE-CCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTTCC--------EEEEEE-CSSCEEEEEECSSSSEEE
T ss_pred CcEeEEEEe-cCCCceeEEEECCC-CCEEEEecCCceEEEEECCCCc--------eeeeec-CCCCceeEEecCCCceEE
Confidence 67777777 78999999999984 4589999999999999997765 333443 678899999999999999
Q ss_pred EeeCCC--------------cEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEEe
Q 041325 321 SGACDR--------------SILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRIW 384 (450)
Q Consensus 321 ~g~~dg--------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iw 384 (450)
+++.++ .+++||..+++.+ ..+.+|...|++++|++ ++|++++.||.|++|
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-------------~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw 342 (369)
T 3zwl_B 276 LGGGQEAKDVTTTSANEGKFEARFYHKIFEEEI-------------GRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLH 342 (369)
T ss_dssp EEECCC-------------CEEEEEETTTCCEE-------------EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred EeecCCCceEEEEecCCCcceeEEEecCCCcch-------------hheecccCcEEEEEECCCCCEEEEEcCCCeEEEE
Confidence 999988 8999999988755 56778999999999984 499999999999999
Q ss_pred eCCCC
Q 041325 385 RRSSS 389 (450)
Q Consensus 385 d~~~~ 389 (450)
+++.+
T Consensus 343 ~~~~~ 347 (369)
T 3zwl_B 343 HFEKS 347 (369)
T ss_dssp EECHH
T ss_pred ECccc
Confidence 99864
No 98
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=2.9e-33 Score=248.44 Aligned_cols=266 Identities=22% Similarity=0.304 Sum_probs=221.7
Q ss_pred CCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEe
Q 041325 47 LAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVAT 124 (450)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~ 124 (450)
++........++...++++++++++++|...|++++| ++++|++|+.||+|++||+++++.... +.
T Consensus 39 lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~------------~~ 106 (318)
T 4ggc_A 39 LAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRN------------MT 106 (318)
T ss_dssp EEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEE------------EE
T ss_pred EEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEE------------ec
Confidence 4444455677788888999999998899999999999 799999999999999999999887665 67
Q ss_pred cCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeeccee
Q 041325 125 GNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKC 204 (450)
Q Consensus 125 ~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (450)
+|...+.++.+.+..+++++.++.+++|+...... ...
T Consensus 107 ~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~------------------------------------------~~~ 144 (318)
T 4ggc_A 107 SHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEH------------------------------------------HVA 144 (318)
T ss_dssp CCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSC------------------------------------------EEE
T ss_pred CccceEEEeecCCCEEEEEecCCceEeeecCCCce------------------------------------------eEE
Confidence 89999999999999999999999999999887631 122
Q ss_pred eeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEE---EeecccccceEEEEEeecCCcEE--EEEcCCCcEE
Q 041325 205 TWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLE---SVKNAHDDAINAIVVSKSNDGFV--YTGSADTKIK 279 (450)
Q Consensus 205 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~l--~~~~~dg~i~ 279 (450)
.+.+|...+..+.+.++++++++++.|+.|++||+.+++... .....+...|.++.+.+.....+ ++++.++.|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~ 224 (318)
T 4ggc_A 145 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIR 224 (318)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEE
T ss_pred EEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEE
Confidence 344789999999999999999999999999999998765321 11225778899999998776654 5677899999
Q ss_pred EEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEee--CCCcEEEEEcCCCceeeeCCCCCCceeeeccccC
Q 041325 280 VWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA--CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG 357 (450)
Q Consensus 280 vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (450)
+||.+... .. ....+...+..+.|+|+++.+++++ .|+.|++||+++++.+ ..+.+
T Consensus 225 lwd~~~~~--------~~-~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~-------------~~l~g 282 (318)
T 4ggc_A 225 IWNVCSGA--------CL-SAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKV-------------AELKG 282 (318)
T ss_dssp EEETTTCC--------EE-EEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEE-------------EEECC
T ss_pred EEeccccc--------cc-ccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEE-------------EEEcC
Confidence 99987654 22 2234667899999999999887754 7999999999998765 57789
Q ss_pred CccceEEEEEeC--CeEEEEeCCCeEEEeeCCC
Q 041325 358 HTKAILCLAVVS--NLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 358 ~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~ 388 (450)
|...|++++|++ ++|++|+.||+|+|||+..
T Consensus 283 H~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 283 HTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred CCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 999999999985 4999999999999999875
No 99
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.3e-33 Score=261.09 Aligned_cols=267 Identities=15% Similarity=0.259 Sum_probs=210.9
Q ss_pred eEEecCCCceEEEEEeCC-e--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEE
Q 041325 121 VVATGNGDAVKSLVVLGD-K--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQ 197 (450)
Q Consensus 121 ~~~~~h~~~v~~l~~~~~-~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (450)
.....|.+.|++++|+++ . |++++.||.|++|++....... . ...
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~----------------~-~~~--------------- 169 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKP----------------E-PSG--------------- 169 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSC----------------C-TTC---------------
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCccccc----------------C-ccc---------------
Confidence 346789999999999986 3 8999999999999997631100 0 000
Q ss_pred EeecceeeeecCCCceEEEEEccCCC-EEEEEeCCCcEEEEecCCCeE-------EEEeecccccceEEEEEeecCCcEE
Q 041325 198 VRRHKKCTWVHHVDTVSALALSSDGS-LLYSTSWDRTFKIWRTSDFRC-------LESVKNAHDDAINAIVVSKSNDGFV 269 (450)
Q Consensus 198 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~l 269 (450)
.......+.+|...|.+++|+|++. +|++|+.||.|++||+..+.. ...+. .|...|.+++|+|.+..++
T Consensus 170 -~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~~l 247 (430)
T 2xyi_A 170 -ECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFT-GHTAVVEDVAWHLLHESLF 247 (430)
T ss_dssp -CCCCSEEEECCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEEC-CCSSCEEEEEECSSCTTEE
T ss_pred -cCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeec-CCCCCEeeeEEeCCCCCEE
Confidence 0122334557999999999999988 999999999999999987322 23344 7889999999999777799
Q ss_pred EEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCC-EEEEeeCCCcEEEEEcCCCceeeeCCCCCCc
Q 041325 270 YTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGT-VLYSGACDRSILVWERDQGNYIVDGDDDSGH 348 (450)
Q Consensus 270 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~ 348 (450)
++++.||.|++||+++.. .......+..|...|++++|+|+++ +|++|+.||.|++||+++...
T Consensus 248 ~s~~~dg~i~i~d~~~~~-----~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~---------- 312 (430)
T 2xyi_A 248 GSVADDQKLMIWDTRNNN-----TSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKL---------- 312 (430)
T ss_dssp EEEETTSEEEEEETTCSC-----SSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS----------
T ss_pred EEEeCCCeEEEEECCCCC-----CCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCC----------
Confidence 999999999999998652 1124445567899999999999887 688999999999999997431
Q ss_pred eeeeccccCCccceEEEEEeCC---eEEEEeCCCeEEEeeCCCCcccc------CCCceeEEEecCCCcceEEEEEEecC
Q 041325 349 MVLKGALRGHTKAILCLAVVSN---LLFSGSSDNTIRIWRRSSSVTDH------QKGYSCLAVLEGHRRPVKCLTAVVDS 419 (450)
Q Consensus 349 ~~~~~~~~~~~~~v~~~~~~~~---~l~s~~~dg~v~iwd~~~~~~~~------~~~~~~~~~~~~h~~~v~~l~~~~~~ 419 (450)
....+..|...|++++|+++ +|++++.||.|++||+....... ......+..+.+|...|++++|+|++
T Consensus 313 --~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~ 390 (430)
T 2xyi_A 313 --KLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNE 390 (430)
T ss_dssp --CSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSS
T ss_pred --CeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCC
Confidence 22566779999999999853 69999999999999998631110 01136778888999999999999998
Q ss_pred CCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 420 DYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 420 ~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+. +|++++.||.|+||++.
T Consensus 391 ~~------------~l~s~s~dg~i~iw~~~ 409 (430)
T 2xyi_A 391 PW------------IICSVSEDNIMQVWQMA 409 (430)
T ss_dssp TT------------EEEEEETTSEEEEEEEC
T ss_pred CC------------EEEEEECCCCEEEeEcc
Confidence 85 79999999999999974
No 100
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-33 Score=248.13 Aligned_cols=275 Identities=19% Similarity=0.281 Sum_probs=223.0
Q ss_pred cccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEE
Q 041325 12 RRNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLY 89 (450)
Q Consensus 12 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~ 89 (450)
..+..+.| |+...+.+...+..+.. +...+.+....+. +|...|.+++| ++++|+
T Consensus 19 ~~v~~~~~-~~~~~l~s~~~dg~v~v--------------------w~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~ 75 (313)
T 3odt_A 19 QDVRDVVA-VDDSKVASVSRDGTVRL--------------------WSKDDQWLGTVVY--TGQGFLNSVCYDSEKELLL 75 (313)
T ss_dssp SCEEEEEE-EETTEEEEEETTSEEEE--------------------EEESSSEEEEEEE--ECSSCEEEEEEETTTTEEE
T ss_pred CCcEEEEe-cCCCEEEEEEcCCcEEE--------------------EECCCCEEEEEee--cCCccEEEEEECCCCCEEE
Confidence 35566666 66666666555554433 3344557777787 89999999999 799999
Q ss_pred EeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEeccCccc
Q 041325 90 GGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLK 169 (450)
Q Consensus 90 tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~ 169 (450)
+|+.||.|++|++....... ....+.+|...|.+++|.++.+++++.||.|++|| ...
T Consensus 76 ~~~~dg~i~~~~~~~~~~~~---------~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~----------- 133 (313)
T 3odt_A 76 FGGKDTMINGVPLFATSGED---------PLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGS----------- 133 (313)
T ss_dssp EEETTSCEEEEETTCCTTSC---------C-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTE-----------
T ss_pred EecCCCeEEEEEeeecCCCC---------cccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCc-----------
Confidence 99999999999987653211 11236789999999999888899999999999999 221
Q ss_pred ccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCeEEEEe
Q 041325 170 NKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSDFRCLESV 248 (450)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 248 (450)
....+..|...+.+++|.+ +++++++++.||.|++|| ..+....+
T Consensus 134 --------------------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~ 179 (313)
T 3odt_A 134 --------------------------------LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTF 179 (313)
T ss_dssp --------------------------------EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEE
T ss_pred --------------------------------EEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEE
Confidence 1223346888999999998 999999999999999999 45666777
Q ss_pred ecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcE
Q 041325 249 KNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSI 328 (450)
Q Consensus 249 ~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i 328 (450)
...+...+.+++|+|.+ .+++++.||.|++||+++++ .+..+..|...|++++|+|++ .|++++.||.|
T Consensus 180 ~~~~~~~i~~~~~~~~~--~~~~~~~dg~i~i~d~~~~~--------~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v 248 (313)
T 3odt_A 180 SGIHNDVVRHLAVVDDG--HFISCSNDGLIKLVDMHTGD--------VLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTV 248 (313)
T ss_dssp CSSCSSCEEEEEEEETT--EEEEEETTSEEEEEETTTCC--------EEEEEECCSSCEEEEEECTTS-CEEEEETTSEE
T ss_pred eccCcccEEEEEEcCCC--eEEEccCCCeEEEEECCchh--------hhhhhhcCCceEEEEEEecCC-CEEEEecCCEE
Confidence 64589999999999843 39999999999999997765 566777899999999999999 58899999999
Q ss_pred EEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-eEEEEeCCCeEEEeeCCCC
Q 041325 329 LVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 329 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~ 389 (450)
++||+++++.+ ..+..|...|.+++|+++ .+++++.||.|++||++++
T Consensus 249 ~iwd~~~~~~~-------------~~~~~~~~~i~~~~~~~~~~~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 249 RIWSKENGSLK-------------QVITLPAISIWSVDCMSNGDIIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp EEECTTTCCEE-------------EEEECSSSCEEEEEECTTSCEEEEETTSCEEEEESCGG
T ss_pred EEEECCCCcee-------------EEEeccCceEEEEEEccCCCEEEEeCCCcEEEEeCCCC
Confidence 99999988755 566778889999999865 5778999999999999875
No 101
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-34 Score=263.47 Aligned_cols=269 Identities=10% Similarity=0.065 Sum_probs=206.6
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEE
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIR 150 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~ 150 (450)
.-..+|.+++| ||+++||++.|++|+ |....+ . +.+|...|.+++|+|++ .++++.
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~------------l~gh~~~v~~V~FsPdg-----~~~~~~ 70 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---D------------INCNSKNLFHVKEFPLE-----FENKLD 70 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---C------------CSSBGGGTEEEEEECCC-----CCCTTT
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccc---e------------ecCCCccEEEEEECCCC-----CcceEE
Confidence 55689999999 899999999999999 643332 1 35899999999999987 455555
Q ss_pred EEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeC
Q 041325 151 VWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSW 230 (450)
Q Consensus 151 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 230 (450)
+|+.+... ... + .|...|.+++|+|+|++|++++.
T Consensus 71 ~~~~~~~~-----------------~~~---------------------------~-~~~~~V~~vawSPdG~~LAs~s~ 105 (588)
T 2j04_A 71 FELAQQNG-----------------LLN---------------------------S-QPVCYPRVCKPSPIDDWMAVLSN 105 (588)
T ss_dssp TSCCCSSC-----------------SST---------------------------T-SCSCCEEEEEECSSSSCEEEEET
T ss_pred EEeCCCce-----------------Eee---------------------------c-CCCCcEEEEEECCCCCEEEEEeC
Confidence 55543221 000 0 25678999999999999999999
Q ss_pred CCcEEEEecCCCeEEEEeeccccc-----ceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhH----h
Q 041325 231 DRTFKIWRTSDFRCLESVKNAHDD-----AINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTL----E 301 (450)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~----~ 301 (450)
||.|++||... ++..+. |.. .+.+++|+|+ +.+|++|+.||.|++||+..+.... ...-.+..+ .
T Consensus 106 dg~V~iwd~~~--~l~~l~--~~~~~~~~sv~svafSPD-G~~LAsgs~DGtVkIWd~~~~~l~~-~~~i~l~ti~~~~~ 179 (588)
T 2j04_A 106 NGNVSVFKDNK--MLTNLD--SKGNLSSRTYHCFEWNPI-ESSIVVGNEDGELQFFSIRKNSENT-PEFYFESSIRLSDA 179 (588)
T ss_dssp TSCEEEEETTE--EEEECC--CSSCSTTTCEEEEEECSS-SSCEEEEETTSEEEEEECCCCTTTC-CCCEEEEEEECSCT
T ss_pred CCcEEEEeCCc--eeeecc--CCCccccccEEEEEEcCC-CCEEEEEcCCCEEEEEECCCCcccc-ccceeeeeeecccc
Confidence 99999999644 555554 333 5999999995 4599999999999999997754100 000012333 5
Q ss_pred hcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccc-cCCccceEEEEEeCCeEEEEeCCCe
Q 041325 302 KHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGAL-RGHTKAILCLAVVSNLLFSGSSDNT 380 (450)
Q Consensus 302 ~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~l~s~~~dg~ 380 (450)
+|...|.+++|+||| +++++.|+.|++||+..++.. .....+ .+|...|.+++|+++.|++++ +++
T Consensus 180 gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~----------~~~~tL~~~h~~~V~svaFsg~~LASa~-~~t 246 (588)
T 2j04_A 180 GSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQ----------PVSRMIQNASRRKITDLKIVDYKVVLTC-PGY 246 (588)
T ss_dssp TCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSC----------CCEEEEECCCSSCCCCEEEETTEEEEEC-SSE
T ss_pred cccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccc----------cceeeecccccCcEEEEEEECCEEEEEe-CCe
Confidence 688899999999999 888899999999999876421 011234 478889999999988999887 699
Q ss_pred EEEeeCCCCccccCCCceeEEEecCCCcceEEEEE--EecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 381 IRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTA--VVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 381 v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
|++||+..+ .......+|...|..++| +|++. .+++++.||+ ++|.+
T Consensus 247 IkLWd~~~~--------~~~~~~~gh~~~V~~va~~~s~d~~-------------~La~a~edG~-klw~~ 295 (588)
T 2j04_A 247 VHKIDLKNY--------SISSLKTGSLENFHIIPLNHEKEST-------------ILLMSNKTSY-KVLLE 295 (588)
T ss_dssp EEEEETTTT--------EEEEEECSCCSCCCEEEETTCSSCE-------------EEEECSSCEE-EEEES
T ss_pred EEEEECCCC--------eEEEEEcCCCceEEEEEeeeCCCCC-------------EEEEEcCCCC-EEEee
Confidence 999999864 332333389999999999 99998 9999999999 99986
No 102
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=100.00 E-value=1.2e-33 Score=257.83 Aligned_cols=249 Identities=12% Similarity=0.065 Sum_probs=173.1
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS 219 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (450)
|++++.|++|++||.+.+..... .....+.+|.+.|++++|+
T Consensus 104 las~~~d~~v~lw~~~~~~~~~~--------------------------------------~~~~~~~gH~~~v~~v~~~ 145 (393)
T 4gq1_A 104 LACVCQDNTVRLIITKNETIITQ--------------------------------------HVLGGKSGHHNFVNDIDIA 145 (393)
T ss_dssp EEEEETTSCEEEEEEETTEEEEE--------------------------------------EEECTTTSCSSCEEEEEEE
T ss_pred EEEEeCCCcEEEEECCCCcccee--------------------------------------eeecccCCCCCceEEEEEc
Confidence 89999999999999988742110 1112234799999999999
Q ss_pred c--------CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc
Q 041325 220 S--------DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN 291 (450)
Q Consensus 220 ~--------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 291 (450)
| ++++|++|+.|++|+|||+.++.++..+. .|...+.+++|+|.+..+|++++.||.|++||+++++....
T Consensus 146 p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~-~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~ 224 (393)
T 4gq1_A 146 DVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGY-PLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEE 224 (393)
T ss_dssp EEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEE-ECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----
T ss_pred cccccccCCCCCEEEEEECCCeEEEEECCCCceeeeec-CCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCccccc
Confidence 7 78999999999999999999888777776 68899999999997666899999999999999987653211
Q ss_pred c-----------------cchhhhhHhhcccceEEEEEc-CCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceee--
Q 041325 292 K-----------------KHSLVQTLEKHKSAVTALALS-TDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVL-- 351 (450)
Q Consensus 292 ~-----------------~~~~~~~~~~~~~~i~~l~~~-~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-- 351 (450)
. .........+|...+.++.|+ |+++.|++++.|+.+++||+..++....+.........
T Consensus 225 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~ 304 (393)
T 4gq1_A 225 NSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKN 304 (393)
T ss_dssp ------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------C
T ss_pred ccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEE
Confidence 0 001112234677889999987 79999999999999999999887654332221111000
Q ss_pred ----eccccCCccceEEEEEe--C-CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCC
Q 041325 352 ----KGALRGHTKAILCLAVV--S-NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNR 424 (450)
Q Consensus 352 ----~~~~~~~~~~v~~~~~~--~-~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~ 424 (450)
......+...+..+.+. + .++++|+.||.|++||+.++ .+...+.+|..+|.+++|+|+++
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~--------~~~~~~~~~~~~V~svafspdG~---- 372 (393)
T 4gq1_A 305 LLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEK--------DSNSIPIQLGMPIVDFCWHQDGS---- 372 (393)
T ss_dssp CSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCT--------TCCEEEEECSSCEEEEEECTTSS----
T ss_pred EccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCC--------cEEEEecCCCCcEEEEEEcCCCC----
Confidence 01111122222222222 1 27788899999999999875 44556677889999999999999
Q ss_pred CCCCCCceEEEEEcccCCcEEEEEe
Q 041325 425 NSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 425 ~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+||+++.|| +.+|.|
T Consensus 373 ---------~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 373 ---------HLAIATEGS-VLLTRL 387 (393)
T ss_dssp ---------EEEEEESSE-EEEEEE
T ss_pred ---------EEEEEeCCC-eEEEEE
Confidence 999998777 666655
No 103
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.5e-33 Score=254.52 Aligned_cols=269 Identities=12% Similarity=0.198 Sum_probs=205.1
Q ss_pred CCccceeeeEEeecCCCcceEEEEE--e---CCEEEEeeCCCcEEEecCCCCC-ceeeeecCCCCcceeEEecCCCceEE
Q 041325 59 AASEHQCSATLKVKGNSSYIPSLAI--A---GKLLYGGSSNGEIRAWNRDPNN-YVNITSTDVGDHANVVATGNGDAVKS 132 (450)
Q Consensus 59 ~~~~~~~~~~l~~~~h~~~v~~~~~--d---~~~l~tgs~dg~v~vw~~~~~~-~~~~~~~~~~~~~~~~~~~h~~~v~~ 132 (450)
...+++....... +|...|++++| + +++|++|+.||.|++||+.+++ .... +.+|...|.+
T Consensus 50 ~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~------------~~~~~~~v~~ 116 (357)
T 3i2n_A 50 EIQHGDLKLLREI-EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYS------------VKGHKEIINA 116 (357)
T ss_dssp EECSSSEEEEEEE-EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEE------------ECCCSSCEEE
T ss_pred eCCCCcccceeee-cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEE------------EEecccceEE
Confidence 3333444433332 79999999999 4 6999999999999999999876 4433 6789999999
Q ss_pred EEEe------CC--eEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeeccee
Q 041325 133 LVVL------GD--KLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKC 204 (450)
Q Consensus 133 l~~~------~~--~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (450)
++|. ++ .|++++.||.|++||+..+.. .+..+....
T Consensus 117 ~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~---------------~~~~~~~~~--------------------- 160 (357)
T 3i2n_A 117 IDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDD---------------PVANMEPVQ--------------------- 160 (357)
T ss_dssp EEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSS---------------CSEEECCCT---------------------
T ss_pred EeeccccccCCCccEEEEEeCCCeEEEEeCCCCCC---------------cceeccccC---------------------
Confidence 9764 44 399999999999999988731 111111000
Q ss_pred eeecCCCceEEEE----EccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeec--CCcEEEEEcCCCcE
Q 041325 205 TWVHHVDTVSALA----LSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKS--NDGFVYTGSADTKI 278 (450)
Q Consensus 205 ~~~~~~~~v~~~~----~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i 278 (450)
..+...+.+++ |+++++++++++.||.|++||+++++..... .|...|.+++|+|. ...++++++.||.|
T Consensus 161 --~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i 236 (357)
T 3i2n_A 161 --GENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWET--NIKNGVCSLEFDRKDISMNKLVATSLEGKF 236 (357)
T ss_dssp --TSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEESCSSSSCCEEEEEESTTEE
T ss_pred --CCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeec--CCCCceEEEEcCCCCCCCCEEEEECCCCeE
Confidence 01234788888 7889999999999999999999999876554 58899999999983 34589999999999
Q ss_pred EEEeCcchhhhccccchhhhhH-----hhcccceEEEEEcCCCC-EEEEeeCCCcEEEEEcCCCceeeeCCCCC------
Q 041325 279 KVWKKLRAALQVNKKHSLVQTL-----EKHKSAVTALALSTDGT-VLYSGACDRSILVWERDQGNYIVDGDDDS------ 346 (450)
Q Consensus 279 ~vwd~~~~~~~~~~~~~~~~~~-----~~~~~~i~~l~~~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~------ 346 (450)
++||+++++ ....+ ..|...|++++|+|+++ +|++|+.||.|++||++.+..........
T Consensus 237 ~i~d~~~~~--------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~ 308 (357)
T 3i2n_A 237 HVFDMRTQH--------PTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVA 308 (357)
T ss_dssp EEEEEEEEE--------TTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCC
T ss_pred EEEeCcCCC--------cccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccc
Confidence 999998765 33333 37899999999999998 89999999999999998765432211111
Q ss_pred CceeeeccccCCccceEEEEEeCC--eEE-EEeCCCeEEEeeCCC
Q 041325 347 GHMVLKGALRGHTKAILCLAVVSN--LLF-SGSSDNTIRIWRRSS 388 (450)
Q Consensus 347 ~~~~~~~~~~~~~~~v~~~~~~~~--~l~-s~~~dg~v~iwd~~~ 388 (450)
........+.+|...|++++|+++ +|+ +++.||.|++||+.+
T Consensus 309 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 309 GSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp CEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred cccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 122455677889999999999855 676 899999999999986
No 104
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=3e-33 Score=255.10 Aligned_cols=277 Identities=14% Similarity=0.184 Sum_probs=208.6
Q ss_pred cccCCCccCCCC-CccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcceEEEEE---eCCE
Q 041325 12 RRNKEPKFQPSS-NHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLAI---AGKL 87 (450)
Q Consensus 12 ~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~---d~~~ 87 (450)
..+..+.|+|+. ..+.+...+..+.. +.....+....+...+|...|.+++| ++++
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~i--------------------wd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 133 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIIL--------------------WDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQ 133 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEE--------------------EETTSTTCEEEECCCSTTCBEEEEEEETTEEEE
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEE--------------------EeCCCcccceeeecCCcCCceeEEEeCCCCCCE
Confidence 456677788876 56666655554433 33333455556665589999999999 4689
Q ss_pred EEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEecc
Q 041325 88 LYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTS 165 (450)
Q Consensus 88 l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~ 165 (450)
|++|+.||.|++||+.+...... .. ..+|...|.+++|+++. |++++.||.|++||++..
T Consensus 134 l~s~~~d~~i~iwd~~~~~~~~~-~~---------~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-------- 195 (383)
T 3ei3_B 134 LFVSSIRGATTLRDFSGSVIQVF-AK---------TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDGH-------- 195 (383)
T ss_dssp EEEEETTTEEEEEETTSCEEEEE-EC---------CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTSC--------
T ss_pred EEEEeCCCEEEEEECCCCceEEE-ec---------cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCCC--------
Confidence 99999999999999986432222 11 12455889999999876 999999999999999532
Q ss_pred CcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCC-EEEEEeCCCcEEEEecCC---
Q 041325 166 GKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGS-LLYSTSWDRTFKIWRTSD--- 241 (450)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~--- 241 (450)
....+..|...|.+++|+|+++ ++++++.|+.|++||+++
T Consensus 196 ------------------------------------~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~ 239 (383)
T 3ei3_B 196 ------------------------------------EIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKD 239 (383)
T ss_dssp ------------------------------------EEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCS
T ss_pred ------------------------------------EEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCc
Confidence 1223446889999999999998 999999999999999997
Q ss_pred -CeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhc-----------------
Q 041325 242 -FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKH----------------- 303 (450)
Q Consensus 242 -~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~----------------- 303 (450)
+..+..+ .|...|.+++|+|....+|++++.|+.|++||+++.+. ...+..|
T Consensus 240 ~~~~~~~~--~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~p 309 (383)
T 3ei3_B 240 KNSYIAEM--PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK--------PDQIIIHPHRQFQHLTPIKATWHP 309 (383)
T ss_dssp TTCEEEEE--ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS--------CSEEEECCBCCCTTSCCCCCEECS
T ss_pred ccceEEEe--cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc--------ccccccccccccccccceEEeccC
Confidence 5666666 48899999999983344899999999999999987662 1222211
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccC--CccceEEEEEeC--CeEEEEeCCC
Q 041325 304 KSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG--HTKAILCLAVVS--NLLFSGSSDN 379 (450)
Q Consensus 304 ~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~--~~l~s~~~dg 379 (450)
...+..++|+|++++ +|+.||.|++||+.+++.+ ..+.+ |...+.+++|++ ++|++|+ ||
T Consensus 310 ~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~-------------~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~ 373 (383)
T 3ei3_B 310 MYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLV-------------HQLRDPNAAGIISLNKFSPTGDVLASGM-GF 373 (383)
T ss_dssp SSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEE-------------EEECBTTBCSCCCEEEECTTSSEEEEEE-TT
T ss_pred CCCceEEEecCCccc--ccCCCCeEEEEecCCCcee-------------eeecCCCCCceEEEEEEecCccEEEEec-CC
Confidence 134455777777776 7889999999999988765 33443 567778889984 4888987 99
Q ss_pred eEEEeeCCC
Q 041325 380 TIRIWRRSS 388 (450)
Q Consensus 380 ~v~iwd~~~ 388 (450)
.|++||+++
T Consensus 374 ~i~iw~~~~ 382 (383)
T 3ei3_B 374 NILIWNRED 382 (383)
T ss_dssp EEEEEECC-
T ss_pred cEEEEecCC
Confidence 999999874
No 105
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-32 Score=255.17 Aligned_cols=303 Identities=15% Similarity=0.131 Sum_probs=219.2
Q ss_pred cceEEEEE--eCCEEEEeeCCCcEEEecCCCCC---ceeeeecCCC----------------------------------
Q 041325 76 SYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNN---YVNITSTDVG---------------------------------- 116 (450)
Q Consensus 76 ~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~---~~~~~~~~~~---------------------------------- 116 (450)
.++.+++| ||++|+++ .++.|++||+.+++ .+........
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 57888888 78876666 56899999999888 4433221110
Q ss_pred --------CcceeEEecCCCceEEEEEeCCe--E-EEEeCCCeEEEEEcC--CCceeEEeccCcccccceeeeeeccCCC
Q 041325 117 --------DHANVVATGNGDAVKSLVVLGDK--L-FSAHQDHKIRVWKID--NNTSAYYSTSGKLKNKYYERIATLPTLN 183 (450)
Q Consensus 117 --------~~~~~~~~~h~~~v~~l~~~~~~--l-~s~~~dg~i~iw~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (450)
........+|.+.|.+++|++++ | ++++.||.|++||+. ++.. +..+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~----------------~~~~---- 143 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV----------------LKLR---- 143 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC----------------EEEE----
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce----------------eeee----
Confidence 00011123566789999999887 4 888999999999998 5521 1111
Q ss_pred cceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEE----EeecccccceEEE
Q 041325 184 DRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLE----SVKNAHDDAINAI 259 (450)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~----~~~~~~~~~v~~~ 259 (450)
....|...|.+++|+|++++|++|+.+|.|++|++.+++... .+. .|...|.++
T Consensus 144 ---------------------~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~-~h~~~v~~~ 201 (450)
T 2vdu_B 144 ---------------------KRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPIL-GHVSMLTDV 201 (450)
T ss_dssp ---------------------EEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSE-ECSSCEEEE
T ss_pred ---------------------ecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeee-cccCceEEE
Confidence 011467789999999999999999999999999998877543 555 788999999
Q ss_pred EEeec--CCcEEEEEcCCCcEEEEeCcchhhhccccchhhhh-HhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCC
Q 041325 260 VVSKS--NDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQT-LEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQG 336 (450)
Q Consensus 260 ~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~ 336 (450)
+|+|+ ...+|++++.|+.|++||+++++ .+.. +.+|...|.+++|+ ++++|++|+.|+.|++||+.++
T Consensus 202 ~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~--------~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~ 272 (450)
T 2vdu_B 202 HLIKDSDGHQFIITSDRDEHIKISHYPQCF--------IVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTG 272 (450)
T ss_dssp EEEECTTSCEEEEEEETTSCEEEEEESCTT--------CEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTC
T ss_pred EEcCCCCCCcEEEEEcCCCcEEEEECCCCc--------eeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCC
Confidence 99995 15589999999999999997765 3433 45789999999999 9999999999999999999998
Q ss_pred ceeeeCCCCCCce------------eeeccccCCccceEEEEEeC--CeEEEEe-CCCeEEEeeC--CCCccccCCCcee
Q 041325 337 NYIVDGDDDSGHM------------VLKGALRGHTKAILCLAVVS--NLLFSGS-SDNTIRIWRR--SSSVTDHQKGYSC 399 (450)
Q Consensus 337 ~~~~~~~~~~~~~------------~~~~~~~~~~~~v~~~~~~~--~~l~s~~-~dg~v~iwd~--~~~~~~~~~~~~~ 399 (450)
+.+..+....... ............|.+++|.+ ++|++++ .|+.|++|++ .. ......
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~-----~~~l~~ 347 (450)
T 2vdu_B 273 KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQ-----KGDLAL 347 (450)
T ss_dssp CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSS-----TTCEEE
T ss_pred cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCC-----CCceee
Confidence 8664332110000 00000013345788999984 4888888 8999999999 33 223467
Q ss_pred EEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEccc------CCcEEEEEe
Q 041325 400 LAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSL------DCEIKIWQI 449 (450)
Q Consensus 400 ~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~------Dg~i~iw~l 449 (450)
+..+..| ..|.+++|+|++. ++++++. +..|.+|.+
T Consensus 348 ~~~~~~~-~~v~~~~~~~~~~-------------~v~~~~~~~~~~~~~~i~v~~~ 389 (450)
T 2vdu_B 348 KQIITFP-YNVISLSAHNDEF-------------QVTLDNKESSGVQKNFAKFIEY 389 (450)
T ss_dssp EEEEECS-SCEEEEEEETTEE-------------EEEECCTTCCSSCCCSEEEEEE
T ss_pred ccEeccC-CceEEEEecCCcE-------------EEEEecccCCCCCCcceEEEEE
Confidence 7778888 8899999999643 4444443 556888875
No 106
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-33 Score=276.93 Aligned_cols=257 Identities=21% Similarity=0.245 Sum_probs=204.4
Q ss_pred eEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC--e--E
Q 041325 67 ATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD--K--L 140 (450)
Q Consensus 67 ~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~--l 140 (450)
.++. +|.+.|++++| ++++|++|+.||.|+|||+.++..... ..+.+|.+.|.+++|+++ . |
T Consensus 3 ~~l~--gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~----------~~l~~h~~~V~~l~~s~~~~~~~l 70 (753)
T 3jro_A 3 VIAN--AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLI----------DTLTGHEGPVWRVDWAHPKFGTIL 70 (753)
T ss_dssp -------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEE----------EEECCCSSCEEEEEECCTTSCSEE
T ss_pred eecc--cCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccc----------eeccCCcCceEEEEecCCCCCCEE
Confidence 4556 99999999999 799999999999999999874432111 236789999999999854 3 9
Q ss_pred EEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc
Q 041325 141 FSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS 220 (450)
Q Consensus 141 ~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 220 (450)
++|+.||.|++||+.++.. .....+.+|...|.+++|+|
T Consensus 71 ~s~s~Dg~I~vwd~~~~~~-----------------------------------------~~~~~~~~h~~~V~~v~~sp 109 (753)
T 3jro_A 71 ASCSYDGKVLIWKEENGRW-----------------------------------------SQIAVHAVHSASVNSVQWAP 109 (753)
T ss_dssp EEEETTSCEEEEEEETTEE-----------------------------------------EEEEEECCCSSCEEEEEECC
T ss_pred EEEeCCCeEEEEECCCCcc-----------------------------------------cccccccCCCCCeEEEEECC
Confidence 9999999999999988731 11223346889999999999
Q ss_pred C--CCEEEEEeCCCcEEEEecCCCe--EEEEeecccccceEEEEEeec------------CCcEEEEEcCCCcEEEEeCc
Q 041325 221 D--GSLLYSTSWDRTFKIWRTSDFR--CLESVKNAHDDAINAIVVSKS------------NDGFVYTGSADTKIKVWKKL 284 (450)
Q Consensus 221 ~--~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~------------~~~~l~~~~~dg~i~vwd~~ 284 (450)
+ ++++++|+.||.|++||+.++. ....+. .|...|.++.|+|. ++.++++|+.||.|++||++
T Consensus 110 ~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~-~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~ 188 (753)
T 3jro_A 110 HEYGPLLLVASSDGKVSVVEFKENGTTSPIIID-AHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYN 188 (753)
T ss_dssp GGGCSEEEEEETTSEEEEEECCSSSCCCCEEEE-CCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEE
T ss_pred CCCCCEEEEEeCCCcEEEEEeecCCCcceeEee-cCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEecc
Confidence 8 9999999999999999998873 233344 78899999999984 35589999999999999998
Q ss_pred chhhhccccchhhhhHhhcccceEEEEEcCC---CCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccc
Q 041325 285 RAALQVNKKHSLVQTLEKHKSAVTALALSTD---GTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA 361 (450)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~---~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (450)
.+. ........+.+|...|++++|+|+ +++|++|+.||.|++||+.+++.. ..........|...
T Consensus 189 ~~~----~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~--------~~~~~~~~~~~~~~ 256 (753)
T 3jro_A 189 SDA----QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP--------WKKTLLKEEKFPDV 256 (753)
T ss_dssp TTT----TEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC--------CBCCBSSSSCCSSC
T ss_pred CCc----ccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc--------ceeEEeccCCCCCc
Confidence 764 222355667789999999999999 899999999999999999976421 01122344568889
Q ss_pred eEEEEEeC--CeEEEEeCCCeEEEeeCCCC
Q 041325 362 ILCLAVVS--NLLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 362 v~~~~~~~--~~l~s~~~dg~v~iwd~~~~ 389 (450)
|++++|++ +++++|+.||.|++|++..+
T Consensus 257 v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 257 LWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp CCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred eEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 99999985 49999999999999999853
No 107
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=100.00 E-value=1.6e-32 Score=253.78 Aligned_cols=271 Identities=20% Similarity=0.289 Sum_probs=207.8
Q ss_pred CCCcceEEEEE--e-CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC---eEEEEeCC
Q 041325 73 GNSSYIPSLAI--A-GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD---KLFSAHQD 146 (450)
Q Consensus 73 ~h~~~v~~~~~--d-~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~---~l~s~~~d 146 (450)
+|.+.|++++| + +.+||+|+.||.|++|++........ ..........+.+|...|.+++|+++ .|++|+.|
T Consensus 126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~--~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 203 (430)
T 2xyi_A 126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPE--PSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASDD 203 (430)
T ss_dssp EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCC--TTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECTT
T ss_pred cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccC--ccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeCC
Confidence 89999999999 2 67999999999999999876311100 00112233457799999999999976 49999999
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLL 225 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l 225 (450)
|.|++|++....... ..+ .....+..|...|.+++|+| ++.+|
T Consensus 204 g~i~vwd~~~~~~~~------------~~~------------------------~~~~~~~~h~~~v~~v~~~p~~~~~l 247 (430)
T 2xyi_A 204 HTICLWDINATPKEH------------RVI------------------------DAKNIFTGHTAVVEDVAWHLLHESLF 247 (430)
T ss_dssp SCEEEEETTSCCBGG------------GEE------------------------ECSEEECCCSSCEEEEEECSSCTTEE
T ss_pred CeEEEEeCCCCCCCC------------cee------------------------ccceeecCCCCCEeeeEEeCCCCCEE
Confidence 999999998742100 000 01223446899999999999 78899
Q ss_pred EEEeCCCcEEEEecCCC---eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhh
Q 041325 226 YSTSWDRTFKIWRTSDF---RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEK 302 (450)
Q Consensus 226 ~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 302 (450)
++++.||.|++||++++ +.+..+. .|...|++++|+|.+..++++|+.||.|++||++... ..+..+..
T Consensus 248 ~s~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~-------~~~~~~~~ 319 (430)
T 2xyi_A 248 GSVADDQKLMIWDTRNNNTSKPSHTVD-AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLK-------LKLHSFES 319 (430)
T ss_dssp EEEETTSEEEEEETTCSCSSSCSEEEE-CCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT-------SCSEEEEC
T ss_pred EEEeCCCeEEEEECCCCCCCcceeEee-cCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCC-------CCeEEeec
Confidence 99999999999999987 4666666 7899999999999777789999999999999997633 14566777
Q ss_pred cccceEEEEEcCCCC-EEEEeeCCCcEEEEEcCCCceeeeC-CCCCCceeeeccccCCccceEEEEEeCC---eEEEEeC
Q 041325 303 HKSAVTALALSTDGT-VLYSGACDRSILVWERDQGNYIVDG-DDDSGHMVLKGALRGHTKAILCLAVVSN---LLFSGSS 377 (450)
Q Consensus 303 ~~~~i~~l~~~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~~~ 377 (450)
|...|++++|+|+++ +|++++.||.|++||+......... ..............+|...|.+++|+++ +|++++.
T Consensus 320 h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~ 399 (430)
T 2xyi_A 320 HKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSE 399 (430)
T ss_dssp CSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEET
T ss_pred CCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEEC
Confidence 999999999999985 6999999999999999863211000 0000001234567789999999999955 8999999
Q ss_pred CCeEEEeeCCCC
Q 041325 378 DNTIRIWRRSSS 389 (450)
Q Consensus 378 dg~v~iwd~~~~ 389 (450)
||.|++|++...
T Consensus 400 dg~i~iw~~~~~ 411 (430)
T 2xyi_A 400 DNIMQVWQMAEN 411 (430)
T ss_dssp TSEEEEEEECHH
T ss_pred CCCEEEeEcccc
Confidence 999999998864
No 108
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-33 Score=276.18 Aligned_cols=256 Identities=18% Similarity=0.269 Sum_probs=207.2
Q ss_pred EEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEe
Q 041325 122 VATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVR 199 (450)
Q Consensus 122 ~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (450)
.+.+|.+.|++++|++++ |++|+.||+|++||+..+..
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~---------------------------------------- 43 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH---------------------------------------- 43 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE----------------------------------------
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC----------------------------------------
Confidence 467999999999999876 99999999999999985421
Q ss_pred ecceeeeecCCCceEEEEEccC--CCEEEEEeCCCcEEEEecCCCe--EEEEeecccccceEEEEEeecC-CcEEEEEcC
Q 041325 200 RHKKCTWVHHVDTVSALALSSD--GSLLYSTSWDRTFKIWRTSDFR--CLESVKNAHDDAINAIVVSKSN-DGFVYTGSA 274 (450)
Q Consensus 200 ~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~ 274 (450)
.....+.+|.+.|.+++|+++ +++|++|+.||.|++||+.+++ .+..+. .|...|.+++|+|+. ...+++|+.
T Consensus 44 -~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~-~h~~~V~~v~~sp~~~~~~l~sgs~ 121 (753)
T 3jro_A 44 -KLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHA-VHSASVNSVQWAPHEYGPLLLVASS 121 (753)
T ss_dssp -EEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEET
T ss_pred -ccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCccccccccc-CCCCCeEEEEECCCCCCCEEEEEeC
Confidence 122234479999999999987 9999999999999999999887 555555 789999999999863 558999999
Q ss_pred CCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcC-------------CCCEEEEeeCCCcEEEEEcCCCceeee
Q 041325 275 DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST-------------DGTVLYSGACDRSILVWERDQGNYIVD 341 (450)
Q Consensus 275 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-------------~~~~l~~g~~dg~i~vwd~~~~~~~~~ 341 (450)
||.|++||++.+.. .....+..|...|.+++|+| ++++|++|+.||.|++||++++...
T Consensus 122 dg~I~vwdl~~~~~------~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~-- 193 (753)
T 3jro_A 122 DGKVSVVEFKENGT------TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQT-- 193 (753)
T ss_dssp TSEEEEEECCSSSC------CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTE--
T ss_pred CCcEEEEEeecCCC------cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCccc--
Confidence 99999999977631 12334567889999999999 5899999999999999999876422
Q ss_pred CCCCCCceeeeccccCCccceEEEEEeC-----CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEE
Q 041325 342 GDDDSGHMVLKGALRGHTKAILCLAVVS-----NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAV 416 (450)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~-----~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 416 (450)
......+.+|...|++++|++ +++++|+.||.|++||+.++... ..........|...|++++|+
T Consensus 194 -------~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~---~~~~~~~~~~~~~~v~~l~~s 263 (753)
T 3jro_A 194 -------YVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP---WKKTLLKEEKFPDVLWRASWS 263 (753)
T ss_dssp -------EEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC---CBCCBSSSSCCSSCCCCEEEC
T ss_pred -------ceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc---ceeEEeccCCCCCceEEEEEc
Confidence 234456788999999999984 48999999999999999874211 111233345688999999999
Q ss_pred ecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 417 VDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
|++. +|++|+.||.|++|+++
T Consensus 264 pdg~-------------~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 264 LSGN-------------VLALSGGDNKVTLWKEN 284 (753)
T ss_dssp TTTC-------------CEEEECSSSCEECCBCC
T ss_pred CCCC-------------EEEEEcCCCEEEEEecC
Confidence 9999 89999999999999974
No 109
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=100.00 E-value=1.8e-32 Score=234.96 Aligned_cols=296 Identities=13% Similarity=0.066 Sum_probs=198.6
Q ss_pred cceeeeEEeecCCCc----ceEEEEE---e--CCEEEEeeCCCcEEEecCCCC---CceeeeecCCCCcceeEEecCCCc
Q 041325 62 EHQCSATLKVKGNSS----YIPSLAI---A--GKLLYGGSSNGEIRAWNRDPN---NYVNITSTDVGDHANVVATGNGDA 129 (450)
Q Consensus 62 ~~~~~~~l~~~~h~~----~v~~~~~---d--~~~l~tgs~dg~v~vw~~~~~---~~~~~~~~~~~~~~~~~~~~h~~~ 129 (450)
..+++..|+ .-.+ .+.++-| . ..-++++++ ..|++|+..++ +... .+.+|..+
T Consensus 24 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~------------~~~~~~~~ 88 (356)
T 2w18_A 24 NLQLVSELK--NPSGSCSVDVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLY------------TWHFAEVP 88 (356)
T ss_dssp CEEEEEEEC--CCCSSCEEEEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEE------------EEECCSSC
T ss_pred eeeeeehhc--CCCCCeEEEEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeE------------EEeccCce
Confidence 346677776 3333 3455555 2 224666665 79999999887 3333 37788889
Q ss_pred eEEEEEeCCe--EEEEeC--CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceee
Q 041325 130 VKSLVVLGDK--LFSAHQ--DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCT 205 (450)
Q Consensus 130 v~~l~~~~~~--l~s~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (450)
|..+.+.||. |++..- =..-.++.+.-. +.++ .+ +... .
T Consensus 89 v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s----------------------pd~~-~~-------~~~l-------~ 131 (356)
T 2w18_A 89 VLQIVPVPDVYNLVCVALGNLEIREIRALFCS----------------------SDDE-SE-------KQVL-------L 131 (356)
T ss_dssp EEEECCCTTCCSCEEEEECSSSEEEEEEECC-----------------------------C-------CEEE-------E
T ss_pred eEEEEEcCcccceeeeeeccccccceEEEEEC----------------------CCcc-cc-------ccEE-------E
Confidence 9999999865 333221 111111111100 0000 00 0000 0
Q ss_pred eecCCCceEEEEEccCCCEEEEEe--CCCcEEEEec-CCCeEEEEeecccccceEEEEEeec--CCcEEEEEcCCCcEEE
Q 041325 206 WVHHVDTVSALALSSDGSLLYSTS--WDRTFKIWRT-SDFRCLESVKNAHDDAINAIVVSKS--NDGFVYTGSADTKIKV 280 (450)
Q Consensus 206 ~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~-~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i~v 280 (450)
..+|...|..+ ++++++.+++ .|+.|++|++ .+++.+..+. .|...+..++|++. +...|++++.|++|++
T Consensus 132 s~g~~~~v~~l---~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~-~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkI 207 (356)
T 2w18_A 132 KSGNIKAVLGL---TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQF-LMPPEETILTFAEVQGMQEALLGTTIMNNIVI 207 (356)
T ss_dssp EEEEEEEEEEE---TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEE-ECCCSSCEEEEEEEETSTTEEEEEETTSEEEE
T ss_pred eCCCeEEEEec---CCCcEEEecccCCCCcEEEEEECCCCceeeeec-cCCCceeeEEeeccCCCCceEEEecCCCcEEE
Confidence 01233344443 5666666643 5999999999 5588777776 78888888888872 3358999999999999
Q ss_pred EeCcchhhhccccchhhhhHhhcc---cceEEEEEcCCCCEE------------EEeeCCCcEEEEEcCCCceeeeCCCC
Q 041325 281 WKKLRAALQVNKKHSLVQTLEKHK---SAVTALALSTDGTVL------------YSGACDRSILVWERDQGNYIVDGDDD 345 (450)
Q Consensus 281 wd~~~~~~~~~~~~~~~~~~~~~~---~~i~~l~~~~~~~~l------------~~g~~dg~i~vwd~~~~~~~~~~~~~ 345 (450)
||+.+++ .+..+.+|. ..+.+++|+|+|+++ ++|+.|++|++||..+++.+...
T Consensus 208 WDl~TGk--------~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~--- 276 (356)
T 2w18_A 208 WNLKTGQ--------LLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVM--- 276 (356)
T ss_dssp EETTTCC--------EEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEE---
T ss_pred EECCCCc--------EEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEE---
Confidence 9998877 555565433 467788999999876 56788999999999998765210
Q ss_pred CCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceE-EEEEEecCCCCCC
Q 041325 346 SGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVK-CLTAVVDSDYSNR 424 (450)
Q Consensus 346 ~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~~~ 424 (450)
......+|...+.+..+++.++++++.|++|+|||+.++ +++..+.+|...+. .++|+|+++
T Consensus 277 -----~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tG--------k~l~tL~gH~~~vvs~vafSPDG~---- 339 (356)
T 2w18_A 277 -----LYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLG--------QCTALLPPVSDQHWSFVKWSGTDS---- 339 (356)
T ss_dssp -----EECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTC--------SEEEEECCC--CCCCEEEECSSSS----
T ss_pred -----EeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCC--------cEEEEecCCCCCeEEEEEECCCCC----
Confidence 000124666666777777889999999999999999985 78889999988665 589999999
Q ss_pred CCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 425 NSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 425 ~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+|++|+.|++|+|||+.
T Consensus 340 ---------~LaSGS~D~TIklWd~~ 356 (356)
T 2w18_A 340 ---------HLLAGQKDGNIFVYHYS 356 (356)
T ss_dssp ---------EEEEECTTSCEEEEEEC
T ss_pred ---------EEEEEECCCcEEEecCC
Confidence 99999999999999974
No 110
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=3.1e-32 Score=244.44 Aligned_cols=254 Identities=13% Similarity=0.097 Sum_probs=198.6
Q ss_pred ecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeec
Q 041325 124 TGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRH 201 (450)
Q Consensus 124 ~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (450)
.+|.+.|.+++|+++. |++++.||.|++|++...... .
T Consensus 8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~----------------------------------------~ 47 (342)
T 1yfq_A 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN----------------------------------------V 47 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE----------------------------------------E
T ss_pred cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCcc----------------------------------------c
Confidence 4899999999999775 999999999999999876310 0
Q ss_pred ceeeeecCCCceEEEEEccCCC-EEEEEeCCCcEEEEec-CCCeEEEEeecc--cccceEEEEEeecCCcEEEEEcCCCc
Q 041325 202 KKCTWVHHVDTVSALALSSDGS-LLYSTSWDRTFKIWRT-SDFRCLESVKNA--HDDAINAIVVSKSNDGFVYTGSADTK 277 (450)
Q Consensus 202 ~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~-~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~l~~~~~dg~ 277 (450)
.......|...|.+++|+|+++ +|++|+.||.|++||+ .+++. ..+. . |...|.+++|+| ..++++++.|+.
T Consensus 48 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~-~~~~-~~~~~~~v~~l~~~~--~~~l~s~~~d~~ 123 (342)
T 1yfq_A 48 DLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSF-QALT-NNEANLGICRICKYG--DDKLIAASWDGL 123 (342)
T ss_dssp EEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSE-EECB-SCCCCSCEEEEEEET--TTEEEEEETTSE
T ss_pred cceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCce-Eecc-ccCCCCceEEEEeCC--CCEEEEEcCCCe
Confidence 0112336888999999999999 9999999999999999 87765 4554 6 899999999998 559999999999
Q ss_pred EEEEeCcchhhhc-cccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCC-CceeeeCCCCCCceeeeccc
Q 041325 278 IKVWKKLRAALQV-NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQ-GNYIVDGDDDSGHMVLKGAL 355 (450)
Q Consensus 278 i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~ 355 (450)
|++||+++..... ......+..+. |...|.+++|+|++ +++++.|+.|++||+++ +... .....
T Consensus 124 i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~-----------~~~~~ 189 (342)
T 1yfq_A 124 IEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDN-----------GTIEE 189 (342)
T ss_dssp EEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCC-----------CEEEE
T ss_pred EEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeCCCeEEEEECCcccccc-----------ceeee
Confidence 9999987610000 00011344444 78899999999887 99999999999999987 4421 12344
Q ss_pred cCCccceEEEEEeC---CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCc---------ceEEEEEEecCCCCC
Q 041325 356 RGHTKAILCLAVVS---NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRR---------PVKCLTAVVDSDYSN 423 (450)
Q Consensus 356 ~~~~~~v~~~~~~~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~---------~v~~l~~~~~~~~~~ 423 (450)
..|...+.+++|++ +++++++.||.|++|+++.... .........+..|.. .|.+++|+|++.
T Consensus 190 ~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~--- 264 (342)
T 1yfq_A 190 SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGD--DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK--- 264 (342)
T ss_dssp CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCC--STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTC---
T ss_pred cCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCc--ccccccceeeecccccccccccceeEEEEEEcCCCC---
Confidence 56788999999986 4999999999999999976300 000134555666654 999999999999
Q ss_pred CCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 424 RNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 424 ~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+|++++.||.|++||++
T Consensus 265 ----------~l~~~~~dg~i~vwd~~ 281 (342)
T 1yfq_A 265 ----------FLYTAGSDGIISCWNLQ 281 (342)
T ss_dssp ----------CEEEEETTSCEEEEETT
T ss_pred ----------EEEEecCCceEEEEcCc
Confidence 89999999999999974
No 111
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.2e-32 Score=254.75 Aligned_cols=262 Identities=11% Similarity=0.173 Sum_probs=192.1
Q ss_pred cCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecc
Q 041325 125 GNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHK 202 (450)
Q Consensus 125 ~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (450)
.|.+.|.+++|++++ |++|+.||.|++||+.++........ ..+ ..
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~-----~~~---------------------------~~ 73 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSR-----GEY---------------------------NV 73 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCC-----CCE---------------------------EE
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccc-----cce---------------------------eE
Confidence 467899999999876 99999999999999987631100000 000 01
Q ss_pred eeeeecCC------------CceEEEEEccCC--CEEEEEeCCCcEEEEecCCCeEE-----------------------
Q 041325 203 KCTWVHHV------------DTVSALALSSDG--SLLYSTSWDRTFKIWRTSDFRCL----------------------- 245 (450)
Q Consensus 203 ~~~~~~~~------------~~v~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~----------------------- 245 (450)
...+.+|. +.|.+++|+|++ .+|++++.|+.|++||+.+++..
T Consensus 74 ~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 153 (447)
T 3dw8_B 74 YSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLR 153 (447)
T ss_dssp EEEEECCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCC
T ss_pred ecccccccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceE
Confidence 22344576 889999999998 79999999999999999765432
Q ss_pred ----------------EEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEE
Q 041325 246 ----------------ESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTA 309 (450)
Q Consensus 246 ----------------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 309 (450)
..+...|...|.+++|+|+ ..+|++| .|+.|++||++...............+..|...|.+
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 231 (447)
T 3dw8_B 154 VPVFRPMDLMVEASPRRIFANAHTYHINSISINSD-YETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITA 231 (447)
T ss_dssp CCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTT-SSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEE
T ss_pred eccccchheeeeccceEEeccCCCcceEEEEEcCC-CCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEE
Confidence 1233478999999999995 4488888 799999999974321000000001146689999999
Q ss_pred EEEcCCC-CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCc------------cceEEEEEeCC--eEEE
Q 041325 310 LALSTDG-TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT------------KAILCLAVVSN--LLFS 374 (450)
Q Consensus 310 l~~~~~~-~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~v~~~~~~~~--~l~s 374 (450)
++|+|++ ++|++|+.||.|++||+++++... .....+..|. ..|.+++|+++ +|++
T Consensus 232 ~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~ 302 (447)
T 3dw8_B 232 AEFHPNSCNTFVYSSSKGTIRLCDMRASALCD---------RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMT 302 (447)
T ss_dssp EEECSSCTTEEEEEETTSCEEEEETTTCSSSC---------TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEE
T ss_pred EEECCCCCcEEEEEeCCCeEEEEECcCCcccc---------ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEE
Confidence 9999998 999999999999999999876410 0012333444 49999999854 8999
Q ss_pred EeCCCeEEEeeCCCCccccCCCceeEEEecCCCcc---------------eEEEEEEecCCCCCCCCCCCCceEEEEEcc
Q 041325 375 GSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRP---------------VKCLTAVVDSDYSNRNSDHSSTSFLVYSGS 439 (450)
Q Consensus 375 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~---------------v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~ 439 (450)
++. +.|++||++.. .+++..+.+|... +..++|+|++. +|++|+
T Consensus 303 ~~~-~~v~iwd~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~-------------~l~s~s 361 (447)
T 3dw8_B 303 RDY-LSVKVWDLNME-------NRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDS-------------VVMTGS 361 (447)
T ss_dssp EES-SEEEEEETTCC-------SSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSS-------------EEEEEC
T ss_pred eeC-CeEEEEeCCCC-------ccccceeeccccccccccccccccccccceEEEECCCCC-------------EEEEec
Confidence 998 99999999862 2455666677542 33499999999 999999
Q ss_pred cCCcEEEEEeC
Q 041325 440 LDCEIKIWQIR 450 (450)
Q Consensus 440 ~Dg~i~iw~l~ 450 (450)
.||.|++||++
T Consensus 362 ~dg~v~iwd~~ 372 (447)
T 3dw8_B 362 YNNFFRMFDRN 372 (447)
T ss_dssp STTEEEEEETT
T ss_pred cCCEEEEEEcC
Confidence 99999999974
No 112
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=3.2e-32 Score=252.21 Aligned_cols=206 Identities=15% Similarity=0.135 Sum_probs=165.4
Q ss_pred EecCCCceEEEEEeCCe---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEe
Q 041325 123 ATGNGDAVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVR 199 (450)
Q Consensus 123 ~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (450)
..+|...|++|+|+|.. |++|+.||+|++||+..+...
T Consensus 115 ~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~--------------------------------------- 155 (435)
T 4e54_B 115 AAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKP--------------------------------------- 155 (435)
T ss_dssp EEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCC---------------------------------------
T ss_pred CCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCce---------------------------------------
Confidence 56788999999999743 999999999999999876321
Q ss_pred ecceeeeecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCeEEEEee-cccccceEEEEEeecCCcEEEEEcCCCc
Q 041325 200 RHKKCTWVHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSDFRCLESVK-NAHDDAINAIVVSKSNDGFVYTGSADTK 277 (450)
Q Consensus 200 ~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 277 (450)
....+.+|.+.|++++|+| ++++|++|+.||+|++||++++....... ..+...+.+++|+|+ ..+|++|+.||.
T Consensus 156 --~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~g~~dg~ 232 (435)
T 4e54_B 156 --TFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSAS-SRMVVTGDNVGN 232 (435)
T ss_dssp --EEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETT-TTEEEEECSSSB
T ss_pred --eEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCC-CCEEEEEeCCCc
Confidence 1112336999999999998 78999999999999999998755433322 123446788999984 458999999999
Q ss_pred EEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCC-EEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeecccc
Q 041325 278 IKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGT-VLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALR 356 (450)
Q Consensus 278 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 356 (450)
|++||++.. .+..+.+|...|++++|+|+++ +|++|+.|+.|++||+++.+... ......
T Consensus 233 i~~wd~~~~---------~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~----------~~~~~~ 293 (435)
T 4e54_B 233 VILLNMDGK---------ELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKA----------SFLYSL 293 (435)
T ss_dssp EEEEESSSC---------BCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSS----------CCSBCC
T ss_pred EeeeccCcc---------eeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccc----------eEEEee
Confidence 999998643 3556778999999999999876 78899999999999998765321 113346
Q ss_pred CCccceEEEEEeC--CeEEEEeCCCeEEEeeCCCC
Q 041325 357 GHTKAILCLAVVS--NLLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 357 ~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~ 389 (450)
+|...|++++|++ ++|++++.||.|++||+.++
T Consensus 294 ~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~ 328 (435)
T 4e54_B 294 PHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW 328 (435)
T ss_dssp BCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS
T ss_pred eccccccceeECCCCCeeEEEcCCCEEEEEECCCC
Confidence 7999999999985 49999999999999999875
No 113
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=100.00 E-value=8.9e-32 Score=246.86 Aligned_cols=242 Identities=19% Similarity=0.260 Sum_probs=194.3
Q ss_pred ceEEEEEeCCe---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceee
Q 041325 129 AVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCT 205 (450)
Q Consensus 129 ~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (450)
....++++++. +++++.||.|++|++..... . ......
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~----------------~-----------------------~~~~~~ 76 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGR----------------V-----------------------DKNVPL 76 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEE----------------C-----------------------CTTCCC
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCC----------------C-----------------------CCCCce
Confidence 34568888887 34578899999999976521 0 011223
Q ss_pred eecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCCC-------eEEEEeecccccceEEEEEeecCCcEEEEEcCCCc
Q 041325 206 WVHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSDF-------RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTK 277 (450)
Q Consensus 206 ~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 277 (450)
+.+|.+.|.+++|+| ++++|++|+.||.|++||+.++ +.+..+. .|...|.+++|+|++..++++++.||.
T Consensus 77 ~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~l~s~~~dg~ 155 (402)
T 2aq5_A 77 VCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE-GHTKRVGIVAWHPTAQNVLLSAGCDNV 155 (402)
T ss_dssp BCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE-CCSSCEEEEEECSSBTTEEEEEETTSC
T ss_pred EecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEec-CCCCeEEEEEECcCCCCEEEEEcCCCE
Confidence 447999999999999 9999999999999999999987 5566776 899999999999976579999999999
Q ss_pred EEEEeCcchhhhccccchhhhhH--hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccc
Q 041325 278 IKVWKKLRAALQVNKKHSLVQTL--EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGAL 355 (450)
Q Consensus 278 i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 355 (450)
|++||+++++ .+..+ ..|...|.+++|+|++++|++++.||.|++||+++++.+ ..+
T Consensus 156 i~iwd~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-------------~~~ 214 (402)
T 2aq5_A 156 ILVWDVGTGA--------AVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVV-------------AEK 214 (402)
T ss_dssp EEEEETTTTE--------EEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEE-------------EEE
T ss_pred EEEEECCCCC--------ccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCcee-------------eee
Confidence 9999998766 45555 678999999999999999999999999999999988755 344
Q ss_pred -cCCccc-eEEEEEeCC--eEEEE---eCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCC
Q 041325 356 -RGHTKA-ILCLAVVSN--LLFSG---SSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDH 428 (450)
Q Consensus 356 -~~~~~~-v~~~~~~~~--~l~s~---~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~ 428 (450)
..|... +.++.|+++ +|++| +.|+.|++||+++... ..... ...|...+.+++|+|++.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~-----~~~~~-~~~~~~~v~~~~~s~~~~-------- 280 (402)
T 2aq5_A 215 DRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEE-----PLSLQ-ELDTSSGVLLPFFDPDTN-------- 280 (402)
T ss_dssp ECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSS-----CSEEE-ECCCCSSCEEEEEETTTT--------
T ss_pred ccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccC-----CceEE-eccCCCceeEEEEcCCCC--------
Confidence 566665 888999854 88888 7999999999987411 11122 235778899999999999
Q ss_pred CCceEEEE-EcccCCcEEEEEeC
Q 041325 429 SSTSFLVY-SGSLDCEIKIWQIR 450 (450)
Q Consensus 429 ~~~~~~l~-s~~~Dg~i~iw~l~ 450 (450)
+|+ +|+.||.|++||++
T Consensus 281 -----~l~~~g~~dg~i~i~d~~ 298 (402)
T 2aq5_A 281 -----IVYLCGKGDSSIRYFEIT 298 (402)
T ss_dssp -----EEEEEETTCSCEEEEEEC
T ss_pred -----EEEEEEcCCCeEEEEEec
Confidence 665 66689999999974
No 114
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-33 Score=257.42 Aligned_cols=310 Identities=10% Similarity=0.056 Sum_probs=221.7
Q ss_pred ccCCCccCCCCCccccccccccCCCCCCCCCCC----------CCCCCCccccCCCCCccceeeeEEeecCCCcceEEEE
Q 041325 13 RNKEPKFQPSSNHLQSELSNASLSSQPSLPSVP----------SLAPSSSFRKQAPAASEHQCSATLKVKGNSSYIPSLA 82 (450)
Q Consensus 13 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~ 82 (450)
.+.+..|+|++..+++++.+.+++ .+..+..- .|.|.. .........++....+.+ +|...|.+++
T Consensus 17 ~v~sv~~SpDG~~iASas~D~TV~-d~~~~~~l~gh~~~v~~V~FsPdg--~~~~~~~~~~~~~~~~~~-~~~~~V~~va 92 (588)
T 2j04_A 17 WKNNLTWARDGTLYLTTFPDISIG-QPKYAKDINCNSKNLFHVKEFPLE--FENKLDFELAQQNGLLNS-QPVCYPRVCK 92 (588)
T ss_dssp SSCCEEECTTSCEEEECSSSEEEE-EECCCSCCSSBGGGTEEEEEECCC--CCCTTTTSCCCSSCSSTT-SCSCCEEEEE
T ss_pred cEEEEEECCCCCEEEEEcCCceee-cccccceecCCCccEEEEEECCCC--CcceEEEEeCCCceEeec-CCCCcEEEEE
Confidence 677999999999999999999886 33322100 001111 122222333333333332 5688999999
Q ss_pred E--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCC-----ceEEEEEeCCe--EEEEeCCCeEEEEE
Q 041325 83 I--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGD-----AVKSLVVLGDK--LFSAHQDHKIRVWK 153 (450)
Q Consensus 83 ~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~~~~~--l~s~~~dg~i~iw~ 153 (450)
| ||.+||+++.||.|++||.+. +... +. |.. .|.+++|+|++ |++|+.||+|++||
T Consensus 93 wSPdG~~LAs~s~dg~V~iwd~~~--~l~~------------l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd 157 (588)
T 2j04_A 93 PSPIDDWMAVLSNNGNVSVFKDNK--MLTN------------LD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFS 157 (588)
T ss_dssp ECSSSSCEEEEETTSCEEEEETTE--EEEE------------CC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEE
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCc--eeee------------cc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEE
Confidence 9 899999999999999999544 2221 23 443 59999999988 99999999999999
Q ss_pred cCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCc
Q 041325 154 IDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRT 233 (450)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 233 (450)
+..+... ...+-.+..+. ....+|.+.|.+++|+|+| +++++.|+.
T Consensus 158 ~~~~~l~---------~~~~i~l~ti~-----------------------~~~~gh~~~V~sVawSPdg--Laass~D~t 203 (588)
T 2j04_A 158 IRKNSEN---------TPEFYFESSIR-----------------------LSDAGSKDWVTHIVWYEDV--LVAALSNNS 203 (588)
T ss_dssp CCCCTTT---------CCCCEEEEEEE-----------------------CSCTTCCCCEEEEEEETTE--EEEEETTCC
T ss_pred CCCCccc---------cccceeeeeee-----------------------cccccccccEEEEEEcCCc--EEEEeCCCe
Confidence 9876210 00000111110 0013588899999999999 888899999
Q ss_pred EEEEecCCCeE---EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEE
Q 041325 234 FKIWRTSDFRC---LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTAL 310 (450)
Q Consensus 234 i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l 310 (450)
|++||+.+++. ...+...|...|.+++|+ + ..+++++ ++.|++||+..++ ......+|.+.+..+
T Consensus 204 VrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g-~~LASa~-~~tIkLWd~~~~~--------~~~~~~gh~~~V~~v 271 (588)
T 2j04_A 204 VFSMTVSASSHQPVSRMIQNASRRKITDLKIV--D-YKVVLTC-PGYVHKIDLKNYS--------ISSLKTGSLENFHII 271 (588)
T ss_dssp EEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--T-TEEEEEC-SSEEEEEETTTTE--------EEEEECSCCSCCCEE
T ss_pred EEEEECCCCccccceeeecccccCcEEEEEEE--C-CEEEEEe-CCeEEEEECCCCe--------EEEEEcCCCceEEEE
Confidence 99999988773 245544678899999998 3 5888887 6999999987665 212222799999999
Q ss_pred EE--cCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCC
Q 041325 311 AL--STDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 311 ~~--~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~ 388 (450)
+| +|++..|++++.||+ ++|.... +++.++-.++++.|+++++|+...
T Consensus 272 a~~~s~d~~~La~a~edG~-klw~~d~-----------------------------~~~spd~~l~a~~d~~v~lW~~~g 321 (588)
T 2j04_A 272 PLNHEKESTILLMSNKTSY-KVLLEDE-----------------------------LHVTADNIIAPYLEKKFKKWSTIW 321 (588)
T ss_dssp EETTCSSCEEEEECSSCEE-EEEESSS-----------------------------EEEECCCSSHHHHHHHHHHTTTTT
T ss_pred EeeeCCCCCEEEEEcCCCC-EEEeecc-----------------------------EEECCCceEEEEcCCEEEEEECCC
Confidence 99 999999999999999 9998651 335555333444599999999864
Q ss_pred CccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEccc
Q 041325 389 SVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSL 440 (450)
Q Consensus 389 ~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~ 440 (450)
+ .+..+.+ ...|.+++|+|||+ .+|+++.
T Consensus 322 ~---------~l~~~~~-~~~I~~va~SPdG~-------------~lA~~~~ 350 (588)
T 2j04_A 322 N---------EFNNYET-TLVIHGISLSPDGY-------------SIAIVYD 350 (588)
T ss_dssp T---------SSSSSCC-EEEEEEEEECTTSS-------------EEEEEEE
T ss_pred C---------ceeeecc-ceEEEEEEECCCCC-------------EEEEEEe
Confidence 2 2234444 67799999999999 8888863
No 115
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2.4e-31 Score=244.52 Aligned_cols=329 Identities=15% Similarity=0.182 Sum_probs=210.3
Q ss_pred CcccCCCccCC-CCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEe-----ecCCCcceEEEEE-
Q 041325 11 CRRNKEPKFQP-SSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLK-----VKGNSSYIPSLAI- 83 (450)
Q Consensus 11 ~~~~~~~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~h~~~v~~~~~- 83 (450)
...+..+.|+| ++..+.+...+..+..-......... ......... ..+|...|.+++|
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 108 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQS--------------YYTCKAVCSIGRDHPDVHRYSVETVQWY 108 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSS--------------CEEECEEEEECTTCTTCCSSCEEEEEEC
T ss_pred CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccc--------------eEeccccccccccccccCCCcEEEEEEc
Confidence 34777888999 88888887777766541111000000 000000000 1269999999999
Q ss_pred --eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC-----eEEEEeCCCeEEEEEcCC
Q 041325 84 --AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD-----KLFSAHQDHKIRVWKIDN 156 (450)
Q Consensus 84 --d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-----~l~s~~~dg~i~iw~~~~ 156 (450)
++++|++++.||.|++||+.+++.... ..+...+.++.+.+. .+++++.||.|++||+++
T Consensus 109 ~~~~~~l~s~~~d~~i~iwd~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~ 175 (408)
T 4a11_B 109 PHDTGMFTSSSFDKTLKVWDTNTLQTADV-------------FNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKS 175 (408)
T ss_dssp TTCTTCEEEEETTSEEEEEETTTTEEEEE-------------EECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSS
T ss_pred cCCCcEEEEEeCCCeEEEeeCCCCcccee-------------ccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCC
Confidence 567999999999999999998876554 236678999999853 399999999999999987
Q ss_pred CceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCC-EEEEEeCCCcEE
Q 041325 157 NTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGS-LLYSTSWDRTFK 235 (450)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~ 235 (450)
+.. ...+..|...|.+++|+|+++ ++++++.||.|+
T Consensus 176 ~~~-------------------------------------------~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~ 212 (408)
T 4a11_B 176 GSC-------------------------------------------SHILQGHRQEILAVSWSPRYDYILATASADSRVK 212 (408)
T ss_dssp SCC-------------------------------------------CEEECCCCSCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred cce-------------------------------------------eeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEE
Confidence 721 223346888999999999988 589999999999
Q ss_pred EEecCCCe-EEEEee--------------cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhH
Q 041325 236 IWRTSDFR-CLESVK--------------NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTL 300 (450)
Q Consensus 236 iwd~~~~~-~~~~~~--------------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 300 (450)
+||++++. .+..+. ..|...|.+++|+|+ ..++++++.||.|++||+++++....... ...
T Consensus 213 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~vwd~~~~~~~~~~~~---~~~ 288 (408)
T 4a11_B 213 LWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD-GLHLLTVGTDNRMRLWNSSNGENTLVNYG---KVC 288 (408)
T ss_dssp EEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTCCBCCCCCC---CCC
T ss_pred EEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC-CCEEEEecCCCeEEEEECCCCccceeccc---ccc
Confidence 99998765 333331 267889999999984 45899999999999999987652110000 000
Q ss_pred hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCC
Q 041325 301 EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSD 378 (450)
Q Consensus 301 ~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~d 378 (450)
......+........+..+++++.|+.|++||+.+++.+ ..+.+|...|++++|+++ +|++++.|
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~-------------~~~~~~~~~v~~~~~s~~~~~l~s~~~d 355 (408)
T 4a11_B 289 NNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQI-------------TMLKGHYKTVDCCVFQSNFQELYSGSRD 355 (408)
T ss_dssp CCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEE-------------EEECCCSSCEEEEEEETTTTEEEEEETT
T ss_pred ccccccceeEEecCCCceEEEEecCCEEEEEECcCCcce-------------eeeccCCCeEEEEEEcCCCCEEEEECCC
Confidence 011122222222334566777788999999999988755 567889999999999954 89999999
Q ss_pred CeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 379 NTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 379 g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
|.|++||+.+. +.+.....+. ....+.+.... .+.+++.|+.+++|+.
T Consensus 356 g~i~iw~~~~~--------~~~~~~~~~~---~~~~~~~~~~~------------~~~~~~~~~~~~~W~~ 403 (408)
T 4a11_B 356 CNILAWVPSLY--------EPVPDDDETT---TKSQLNPAFED------------AWSSSDEEGGTSAWSH 403 (408)
T ss_dssp SCEEEEEECC-------------------------------------------------------------
T ss_pred CeEEEEeCCCC--------CccCCCCceE---eccccccccce------------eecccCccCceeecCC
Confidence 99999999874 2222222221 11223332221 5677888999999985
No 116
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=100.00 E-value=1.4e-30 Score=235.90 Aligned_cols=247 Identities=17% Similarity=0.229 Sum_probs=191.5
Q ss_pred EecCCCceEEEEEeCC----e-EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEE
Q 041325 123 ATGNGDAVKSLVVLGD----K-LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQ 197 (450)
Q Consensus 123 ~~~h~~~v~~l~~~~~----~-l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (450)
+.+|.+.|++++|+++ . |++|+.||.|++||+++...
T Consensus 35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~-------------------------------------- 76 (368)
T 3mmy_A 35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQ-------------------------------------- 76 (368)
T ss_dssp SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSC--------------------------------------
T ss_pred ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCc--------------------------------------
Confidence 6699999999999987 3 99999999999999987311
Q ss_pred EeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeec-CCcEEEEEcCCC
Q 041325 198 VRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKS-NDGFVYTGSADT 276 (450)
Q Consensus 198 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg 276 (450)
.....+.+|...|.+++|+|++++|++++.||.|++||+.+++.+... .|...|.+++|.+. ...++++++.||
T Consensus 77 ---~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~~~~~dg 151 (368)
T 3mmy_A 77 ---TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIA--QHDAPVKTIHWIKAPNYSCVMTGSWDK 151 (368)
T ss_dssp ---EEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE--ECSSCEEEEEEEECSSCEEEEEEETTS
T ss_pred ---eeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeec--cccCceEEEEEEeCCCCCEEEEccCCC
Confidence 111234469999999999999999999999999999999999887754 58999999999432 344799999999
Q ss_pred cEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeecccc
Q 041325 277 KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALR 356 (450)
Q Consensus 277 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 356 (450)
.|++||+++++ .+..+..+ ..+.++.+. ...+++++.++.+++|+++...... .......
T Consensus 152 ~i~vwd~~~~~--------~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~---------~~~~~~~ 211 (368)
T 3mmy_A 152 TLKFWDTRSSN--------PMMVLQLP-ERCYCADVI--YPMAVVATAERGLIVYQLENQPSEF---------RRIESPL 211 (368)
T ss_dssp EEEEECSSCSS--------CSEEEECS-SCEEEEEEE--TTEEEEEEGGGCEEEEECSSSCEEE---------EECCCSC
T ss_pred cEEEEECCCCc--------EEEEEecC-CCceEEEec--CCeeEEEeCCCcEEEEEeccccchh---------hhccccc
Confidence 99999998765 44444433 456666665 4588899999999999998764331 1112223
Q ss_pred CCccceEEEEEeCC----eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCc------------ceEEEEEEecCC
Q 041325 357 GHTKAILCLAVVSN----LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRR------------PVKCLTAVVDSD 420 (450)
Q Consensus 357 ~~~~~v~~~~~~~~----~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~------------~v~~l~~~~~~~ 420 (450)
.+...+.++.+.+. .+++++.||.|++||+... .....+..+.+|.. .|++++|+|++.
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~ 286 (368)
T 3mmy_A 212 KHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPP-----NPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHG 286 (368)
T ss_dssp SSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCS-----CHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTC
T ss_pred cCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCC-----CccccceeeeeeecccccccccccccceEEEEEecCCC
Confidence 34444445554443 4999999999999999863 11245566677766 799999999999
Q ss_pred CCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 421 YSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 421 ~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+|++|+.||.|++||++
T Consensus 287 -------------~l~s~~~dg~i~iwd~~ 303 (368)
T 3mmy_A 287 -------------TLATVGSDGRFSFWDKD 303 (368)
T ss_dssp -------------CEEEEETTSCEEEEETT
T ss_pred -------------EEEEEccCCeEEEEECC
Confidence 89999999999999974
No 117
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.98 E-value=1.3e-29 Score=231.72 Aligned_cols=262 Identities=16% Similarity=0.159 Sum_probs=204.3
Q ss_pred CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--E-EEEeCCCeEEEEEcCCCceeE
Q 041325 85 GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--L-FSAHQDHKIRVWKIDNNTSAY 161 (450)
Q Consensus 85 ~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l-~s~~~dg~i~iw~~~~~~~~~ 161 (450)
+.++++++.|+.|++||+.+++.... +..|. .+.+++|++++ + ++++.|+.|++||+.+++.
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~------------~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-- 66 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTAT------------IPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-- 66 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEE------------EECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE--
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEE------------eecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeE--
Confidence 34688999999999999998876655 44554 58999999877 4 6777899999999988732
Q ss_pred EeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE-eCCCcEEEEecC
Q 041325 162 YSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST-SWDRTFKIWRTS 240 (450)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~ 240 (450)
+..+ .+...+.+++|+|++++++.+ +.++.|++||+.
T Consensus 67 --------------~~~~----------------------------~~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~ 104 (391)
T 1l0q_A 67 --------------IATV----------------------------PAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTT 104 (391)
T ss_dssp --------------EEEE----------------------------ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred --------------EEEE----------------------------ECCCCccceEECCCCCEEEEEECCCCEEEEEECC
Confidence 2221 123389999999999987655 467999999999
Q ss_pred CCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEE-
Q 041325 241 DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVL- 319 (450)
Q Consensus 241 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l- 319 (450)
+++.+..+. +...+.+++|+|++..++++++.++.|++||+.+++ ....+.. ...+..++|+|++++|
T Consensus 105 ~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~--------~~~~~~~-~~~~~~~~~~~dg~~l~ 173 (391)
T 1l0q_A 105 SNTVAGTVK--TGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKA--------VINTVSV-GRSPKGIAVTPDGTKVY 173 (391)
T ss_dssp TTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE--------EEEEEEC-CSSEEEEEECTTSSEEE
T ss_pred CCeEEEEEe--CCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCc--------EEEEEec-CCCcceEEECCCCCEEE
Confidence 999888876 456789999998666556889999999999997765 3333333 3567999999999887
Q ss_pred EEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEe---CCCeEEEeeCCCCccccC
Q 041325 320 YSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGS---SDNTIRIWRRSSSVTDHQ 394 (450)
Q Consensus 320 ~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~---~dg~v~iwd~~~~~~~~~ 394 (450)
++++.++.|++||+++++.. ..+ .+...+.+++|++ ++|++++ .++.|++||+.++
T Consensus 174 ~~~~~~~~v~~~d~~~~~~~-------------~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~----- 234 (391)
T 1l0q_A 174 VANFDSMSISVIDTVTNSVI-------------DTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN----- 234 (391)
T ss_dssp EEETTTTEEEEEETTTTEEE-------------EEE-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT-----
T ss_pred EEeCCCCEEEEEECCCCeEE-------------EEE-ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC-----
Confidence 57788999999999987654 122 2455788899984 4777777 6899999999874
Q ss_pred CCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEE-EEcccCCcEEEEEeC
Q 041325 395 KGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLV-YSGSLDCEIKIWQIR 450 (450)
Q Consensus 395 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l-~s~~~Dg~i~iw~l~ 450 (450)
+.+..+..|. .+.+++|+|+++ +| ++++.|+.|++||++
T Consensus 235 ---~~~~~~~~~~-~~~~~~~s~dg~-------------~l~~s~~~d~~v~v~d~~ 274 (391)
T 1l0q_A 235 ---KITARIPVGP-DPAGIAVTPDGK-------------KVYVALSFXNTVSVIDTA 274 (391)
T ss_dssp ---EEEEEEECCS-SEEEEEECTTSS-------------EEEEEETTTTEEEEEETT
T ss_pred ---eEEEEEecCC-CccEEEEccCCC-------------EEEEEcCCCCEEEEEECC
Confidence 5666676665 478999999998 55 788899999999974
No 118
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.98 E-value=1.7e-29 Score=234.28 Aligned_cols=286 Identities=10% Similarity=0.121 Sum_probs=218.4
Q ss_pred eeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--
Q 041325 64 QCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 139 (450)
+.+..+. .+ ..+.+++| ++.++++++.|+.|++||+.+++........ .+.+|...|.+++|+++.
T Consensus 114 ~~~~~~~--~~-~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~ 183 (433)
T 3bws_A 114 RFISRFK--TG-FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPE-------KYKKKLGFVETISIPEHNEL 183 (433)
T ss_dssp EEEEEEE--CS-SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCH-------HHHTTCCEEEEEEEGGGTEE
T ss_pred eEEEEEc--CC-CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcc-------cccccCCceeEEEEcCCCEE
Confidence 5566665 44 44568888 5778888889999999999988866532111 135788999999998655
Q ss_pred EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc
Q 041325 140 LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS 219 (450)
Q Consensus 140 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 219 (450)
+++++.|+.|++||+++++. + ..+..|...+.+++|+
T Consensus 184 ~~s~~~d~~v~~~d~~~~~~----------------~---------------------------~~~~~~~~~~~~~~~~ 220 (433)
T 3bws_A 184 WVSQMQANAVHVFDLKTLAY----------------K---------------------------ATVDLTGKWSKILLYD 220 (433)
T ss_dssp EEEEGGGTEEEEEETTTCCE----------------E---------------------------EEEECSSSSEEEEEEE
T ss_pred EEEECCCCEEEEEECCCceE----------------E---------------------------EEEcCCCCCeeEEEEc
Confidence 88999999999999987732 1 1223577789999999
Q ss_pred cCCCEEEEE-eCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEc--------CCCcEEEEeCcchhhhc
Q 041325 220 SDGSLLYST-SWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGS--------ADTKIKVWKKLRAALQV 290 (450)
Q Consensus 220 ~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~--------~dg~i~vwd~~~~~~~~ 290 (450)
|++++++++ +.|+.|++||+.+++.+..+. ....+.+++|+|++. .+++++ .||.|++||+++++
T Consensus 221 ~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~-~l~~~~~~~~~~~~~dg~i~~~d~~~~~--- 294 (433)
T 3bws_A 221 PIRDLVYCSNWISEDISVIDRKTKLEIRKTD--KIGLPRGLLLSKDGK-ELYIAQFSASNQESGGGRLGIYSMDKEK--- 294 (433)
T ss_dssp TTTTEEEEEETTTTEEEEEETTTTEEEEECC--CCSEEEEEEECTTSS-EEEEEEEESCTTCSCCEEEEEEETTTTE---
T ss_pred CCCCEEEEEecCCCcEEEEECCCCcEEEEec--CCCCceEEEEcCCCC-EEEEEECCCCccccCCCeEEEEECCCCc---
Confidence 999988554 479999999999999888876 345699999998554 666666 58899999997765
Q ss_pred cccchhhhhHhhcccceEEEEEcCCCCEE-EEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDGTVL-YSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS 369 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l-~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 369 (450)
....+ .+...+..++|+|+++.+ ++++.|+.|++||+.+++.+ ..+ .+...+.+++|++
T Consensus 295 -----~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~-------------~~~-~~~~~~~~~~~s~ 354 (433)
T 3bws_A 295 -----LIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQ-------------KSI-PVFDKPNTIALSP 354 (433)
T ss_dssp -----EEEEE-EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEE-------------EEE-ECSSSEEEEEECT
T ss_pred -----EEeec-cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEE-------------EEe-cCCCCCCeEEEcC
Confidence 22222 456688999999999755 66688999999999987654 222 2556788999984
Q ss_pred C--eEEEEeC---------------CCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCce
Q 041325 370 N--LLFSGSS---------------DNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTS 432 (450)
Q Consensus 370 ~--~l~s~~~---------------dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~ 432 (450)
+ ++++++. ||.|++||+.++ +.+..+.. ...+.+++|+|+++
T Consensus 355 dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~--------~~~~~~~~-~~~~~~~~~s~dg~------------ 413 (433)
T 3bws_A 355 DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD--------TVKEFWEA-GNQPTGLDVSPDNR------------ 413 (433)
T ss_dssp TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT--------EEEEEEEC-SSSEEEEEECTTSC------------
T ss_pred CCCEEEEEecCCCccccccccccccceEEEEEECCCC--------cEEEEecC-CCCCceEEEcCCCC------------
Confidence 4 7777765 579999999874 55666665 45789999999998
Q ss_pred EEEEEcc-cCCcEEEEEeC
Q 041325 433 FLVYSGS-LDCEIKIWQIR 450 (450)
Q Consensus 433 ~~l~s~~-~Dg~i~iw~l~ 450 (450)
+|++++ .|+.|++|++.
T Consensus 414 -~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 414 -YLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp -EEEEEETTTTEEEEEEET
T ss_pred -EEEEEECCCCeEEEEEec
Confidence 777766 59999999974
No 119
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.8e-30 Score=237.73 Aligned_cols=282 Identities=16% Similarity=0.075 Sum_probs=197.2
Q ss_pred CceEEEEEeCCe-EEEEeCCCeEEEEEcCCCc---eeEEeccCcccccceeeeeeccCCCcceeEeeec---------Cc
Q 041325 128 DAVKSLVVLGDK-LFSAHQDHKIRVWKIDNNT---SAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLA---------NN 194 (450)
Q Consensus 128 ~~v~~l~~~~~~-l~s~~~dg~i~iw~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 194 (450)
.++.+++|++++ ++.++.++.|++||+.+++ ................. ..+............ ..
T Consensus 5 ~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRN--TTAKEQQGQSSENENENKKLKSNKGD 82 (450)
T ss_dssp CCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC------------------------------------
T ss_pred ccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCcccccccccc--ccchhhccccccccccccccccCcCc
Confidence 478999999877 6666778999999999886 32221111000000000 000000000000000 00
Q ss_pred eE----EEeecceeeeecCCCceEEEEEccCCCEE-EEEeCCCcEEEEecC--CCeEEEEeec-ccccceEEEEEeecCC
Q 041325 195 YV----QVRRHKKCTWVHHVDTVSALALSSDGSLL-YSTSWDRTFKIWRTS--DFRCLESVKN-AHDDAINAIVVSKSND 266 (450)
Q Consensus 195 ~~----~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~--~~~~~~~~~~-~~~~~v~~~~~~~~~~ 266 (450)
.. ............|.+.|.+++|+|++++| ++++.||.|++||+. +++.+..+.. .+...|.+++|+|++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~- 161 (450)
T 2vdu_B 83 SIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDD- 161 (450)
T ss_dssp -----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTS-
T ss_pred cccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCC-
Confidence 00 00001112234678899999999999996 889899999999999 8887777752 456889999999854
Q ss_pred cEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCC---CCEEEEeeCCCcEEEEEcCCCceeeeCC
Q 041325 267 GFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTD---GTVLYSGACDRSILVWERDQGNYIVDGD 343 (450)
Q Consensus 267 ~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~---~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 343 (450)
.+|++++.+|.|++|++.+.+. .......+.+|...|++++|+|+ +++|++|+.|+.|++||+++++.+.
T Consensus 162 ~~l~~~~~~g~v~~~~~~~~~~----~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~--- 234 (450)
T 2vdu_B 162 TTVIIADKFGDVYSIDINSIPE----EKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD--- 234 (450)
T ss_dssp SEEEEEETTSEEEEEETTSCCC----SSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE---
T ss_pred CEEEEEeCCCcEEEEecCCccc----ccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee---
Confidence 5899999999999999876551 11022356779999999999999 9999999999999999999876541
Q ss_pred CCCCceeeeccccCCccceEEEEEe-CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEec------------------
Q 041325 344 DDSGHMVLKGALRGHTKAILCLAVV-SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLE------------------ 404 (450)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~------------------ 404 (450)
..+.+|...|.+++|+ +++|++++.|+.|++||+.++ +++..+.
T Consensus 235 ---------~~~~~h~~~v~~~~~sd~~~l~s~~~d~~v~vwd~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (450)
T 2vdu_B 235 ---------KWLFGHKHFVSSICCGKDYLLLSAGGDDKIFAWDWKTG--------KNLSTFDYNSLIKPYLNDQHLAPPR 297 (450)
T ss_dssp ---------EECCCCSSCEEEEEECSTTEEEEEESSSEEEEEETTTC--------CEEEEEECHHHHGGGCCTTSBC---
T ss_pred ---------eeecCCCCceEEEEECCCCEEEEEeCCCeEEEEECCCC--------cEeeeecchhhhhhhhhhccccccc
Confidence 2256899999999997 669999999999999999875 3444443
Q ss_pred -------CCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcc-cCCcEEEEEe
Q 041325 405 -------GHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGS-LDCEIKIWQI 449 (450)
Q Consensus 405 -------~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~-~Dg~i~iw~l 449 (450)
.+...|.+++|+|+++ +|++++ .|+.|++|++
T Consensus 298 ~~~~~~~~~~~~v~~i~~~~~~~-------------~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 298 FQNENNDIIEFAVSKIIKSKNLP-------------FVAFFVEATKCIIILEM 337 (450)
T ss_dssp -------CBCCCEEEEEECSSSS-------------EEEEEETTCSEEEEEEE
T ss_pred ccccccccceEEEEEEEEeCCCC-------------EEEEEECCCCeEEEEEe
Confidence 2345789999999999 888888 8999999998
No 120
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=2.1e-29 Score=226.54 Aligned_cols=242 Identities=13% Similarity=0.182 Sum_probs=175.3
Q ss_pred EecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEee
Q 041325 123 ATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRR 200 (450)
Q Consensus 123 ~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (450)
...|...|.+++|++++ |++|+.| .+++|+++..... ..
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~-~~~iw~~~~~~~~----------------~~---------------------- 55 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLK-SFEIYNVHPVAHI----------------MS---------------------- 55 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSS-EEEEEEETTEEEE----------------EE----------------------
T ss_pred cccCCCceEEEEECCCCCEEEEEcCC-EEEEEecCCccee----------------ee----------------------
Confidence 46899999999999888 6666555 5899998865221 00
Q ss_pred cceeeeecCCCceEEEEEccCCCEE-EEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEE
Q 041325 201 HKKCTWVHHVDTVSALALSSDGSLL-YSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIK 279 (450)
Q Consensus 201 ~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 279 (450)
.+...+..+++.++++.+ ++++.|+.|++||..+++.+..+. +...|.++.+++ + .++++ .|+.|+
T Consensus 56 -------~~~~~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~--~-~~~~~-~~~~i~ 122 (355)
T 3vu4_A 56 -------QEMRHLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK--VDAPVKDLFLSR--E-FIVVS-YGDVIS 122 (355)
T ss_dssp -------EECSCCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE--CSSCEEEEEECS--S-EEEEE-ETTEEE
T ss_pred -------eecCCeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE--CCCceEEEEEcC--C-EEEEE-EcCEEE
Confidence 111246778888888777 567788999999999999998886 667999999984 4 33333 478999
Q ss_pred EEeCcch-hhhccccchhhhhHhhcccceEEEEEcCCCCEEEE--eeCCCcEEEEEcCCCceeeeCCCCC--Cceee-ec
Q 041325 280 VWKKLRA-ALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYS--GACDRSILVWERDQGNYIVDGDDDS--GHMVL-KG 353 (450)
Q Consensus 280 vwd~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~--g~~dg~i~vwd~~~~~~~~~~~~~~--~~~~~-~~ 353 (450)
+||+.+. + .+..+.. ....+++++ .++++ |+.||.|++||+.+++......... ....+ ..
T Consensus 123 i~d~~~~~~--------~~~~~~~---~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~ 189 (355)
T 3vu4_A 123 VFKFGNPWK--------RITDDIR---FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGV 189 (355)
T ss_dssp EEESSTTCC--------BSSCCEE---EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCE
T ss_pred EEECCCCce--------eeEEecc---CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccE
Confidence 9999776 3 3333332 344566776 56665 6889999999999765221110000 00111 45
Q ss_pred cccCCccceEEEEEeC--CeEEEEeCCCe-EEEeeCCCCccccCCCceeEEEec-C-CCcceEEEEEEecCCCCCCCCCC
Q 041325 354 ALRGHTKAILCLAVVS--NLLFSGSSDNT-IRIWRRSSSVTDHQKGYSCLAVLE-G-HRRPVKCLTAVVDSDYSNRNSDH 428 (450)
Q Consensus 354 ~~~~~~~~v~~~~~~~--~~l~s~~~dg~-v~iwd~~~~~~~~~~~~~~~~~~~-~-h~~~v~~l~~~~~~~~~~~~~~~ 428 (450)
.+.+|...|++++|++ ++|++|+.||+ |++||++++ +++..+. + |...|.+++|+|++.
T Consensus 190 ~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~--------~~~~~~~~g~h~~~v~~~~~s~~~~-------- 253 (355)
T 3vu4_A 190 LIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG--------VLVREFRRGLDRADVVDMKWSTDGS-------- 253 (355)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC--------CEEEEEECTTCCSCEEEEEECTTSC--------
T ss_pred EEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC--------cEEEEEEcCCCCCcEEEEEECCCCC--------
Confidence 6789999999999985 49999999998 999999975 6777777 5 999999999999999
Q ss_pred CCceEEEEEcccCCcEEEEEeC
Q 041325 429 SSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 429 ~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+|++++.|++|++||++
T Consensus 254 -----~l~s~s~d~~v~iw~~~ 270 (355)
T 3vu4_A 254 -----KLAVVSDKWTLHVFEIF 270 (355)
T ss_dssp -----EEEEEETTCEEEEEESS
T ss_pred -----EEEEEECCCEEEEEEcc
Confidence 99999999999999974
No 121
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.97 E-value=2.5e-30 Score=235.91 Aligned_cols=232 Identities=7% Similarity=0.020 Sum_probs=164.6
Q ss_pred eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC--------Ce--EEEEeCCCeEEEEE
Q 041325 84 AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG--------DK--LFSAHQDHKIRVWK 153 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--------~~--l~s~~~dg~i~iw~ 153 (450)
++.+|++|+.|++|+|||.++++........ .+.+|.+.|++++|+| +. |++|+.|++|++||
T Consensus 100 ~~~~las~~~d~~v~lw~~~~~~~~~~~~~~-------~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd 172 (393)
T 4gq1_A 100 YSLFLACVCQDNTVRLIITKNETIITQHVLG-------GKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWR 172 (393)
T ss_dssp EEEEEEEEETTSCEEEEEEETTEEEEEEEEC-------TTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEE
T ss_pred CCCEEEEEeCCCcEEEEECCCCccceeeeec-------ccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEE
Confidence 5678999999999999999887654331111 1468999999999986 33 99999999999999
Q ss_pred cCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCC-CEEEEEeCCC
Q 041325 154 IDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDG-SLLYSTSWDR 232 (450)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg 232 (450)
+.++.. ...+..|...|.+++|+|++ .+|++++.|+
T Consensus 173 ~~~~~~-------------------------------------------~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~ 209 (393)
T 4gq1_A 173 LTDEGP-------------------------------------------ILAGYPLSSPGISVQFRPSNPNQLIVGERNG 209 (393)
T ss_dssp EETTEE-------------------------------------------EEEEEECSSCEEEEEEETTEEEEEEEEETTS
T ss_pred CCCCce-------------------------------------------eeeecCCCCCcEEEEECCCCCceEEecCCCC
Confidence 987621 22334688899999999976 5899999999
Q ss_pred cEEEEecCCCeEEEEee------------------------cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhh
Q 041325 233 TFKIWRTSDFRCLESVK------------------------NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAAL 288 (450)
Q Consensus 233 ~i~iwd~~~~~~~~~~~------------------------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 288 (450)
+|++||+.+++...... ..|...+.++.|.+.+...+++++.|+.+++||+..++
T Consensus 210 ~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~- 288 (393)
T 4gq1_A 210 NIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANN- 288 (393)
T ss_dssp EEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-----
T ss_pred EEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCC-
Confidence 99999998876443321 24667889999986566689999999999999997765
Q ss_pred hccccchhhhhHhhcccceEE------------------EEEcC--CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCc
Q 041325 289 QVNKKHSLVQTLEKHKSAVTA------------------LALST--DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGH 348 (450)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~i~~------------------l~~~~--~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~ 348 (450)
....+..+...+.. ..++| ++.++++|+.||.|++||+.+++..
T Consensus 289 -------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~--------- 352 (393)
T 4gq1_A 289 -------DYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSN--------- 352 (393)
T ss_dssp ----------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCC---------
T ss_pred -------CCceEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEE---------
Confidence 22233333322222 23333 3446778889999999999987644
Q ss_pred eeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEEeeCC
Q 041325 349 MVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 349 ~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~ 387 (450)
.....|..+|.+++|++ ++||+++.+| +.+|.+.
T Consensus 353 ----~~~~~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 353 ----SIPIQLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp ----EEEEECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred ----EEecCCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 34567888999999995 4999998776 5555543
No 122
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.97 E-value=4.6e-28 Score=221.44 Aligned_cols=302 Identities=15% Similarity=0.185 Sum_probs=219.0
Q ss_pred ccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEE-EEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCce
Q 041325 54 RKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLL-YGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAV 130 (450)
Q Consensus 54 ~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l-~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 130 (450)
....+...++++++.+. +|. .+.+++| ++++| ++++.|+.|++||+.+++.... +..+. .+
T Consensus 13 ~v~v~d~~~~~~~~~~~--~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~------------~~~~~-~v 76 (391)
T 1l0q_A 13 NISVIDVTSNKVTATIP--VGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT------------VPAGS-SP 76 (391)
T ss_dssp EEEEEETTTTEEEEEEE--CSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE------------EECSS-SE
T ss_pred EEEEEECCCCeEEEEee--cCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEE------------EECCC-Cc
Confidence 34445556678888887 665 4899999 78776 6777999999999998876654 33333 89
Q ss_pred EEEEEeCCe--E-EEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeee
Q 041325 131 KSLVVLGDK--L-FSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWV 207 (450)
Q Consensus 131 ~~l~~~~~~--l-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (450)
.+++|+++. | ++++.|+.|++||+.+++. +..+
T Consensus 77 ~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~----------------~~~~---------------------------- 112 (391)
T 1l0q_A 77 QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV----------------AGTV---------------------------- 112 (391)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTTEE----------------EEEE----------------------------
T ss_pred cceEECCCCCEEEEEECCCCEEEEEECCCCeE----------------EEEE----------------------------
Confidence 999999876 5 4555679999999998732 1111
Q ss_pred cCCCceEEEEEccCCCEE-EEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcch
Q 041325 208 HHVDTVSALALSSDGSLL-YSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 286 (450)
.+...+.+++|+|+++.+ ++++.++.|++||+.+++.+..+. ....+.+++|+|++..++++++.++.|++||++++
T Consensus 113 ~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~ 190 (391)
T 1l0q_A 113 KTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVS--VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN 190 (391)
T ss_dssp ECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred eCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEe--cCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 133468999999999977 677889999999999999888876 34567999999866655678899999999999776
Q ss_pred hhhccccchhhhhHhhcccceEEEEEcCCCCEEEEee---CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceE
Q 041325 287 ALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA---CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAIL 363 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 363 (450)
+ ....+. +...+.+++|+|++++|++++ .++.|++||+.+++.+ ..+..|. .+.
T Consensus 191 ~--------~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~-------------~~~~~~~-~~~ 247 (391)
T 1l0q_A 191 S--------VIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKIT-------------ARIPVGP-DPA 247 (391)
T ss_dssp E--------EEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEE-------------EEEECCS-SEE
T ss_pred e--------EEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEE-------------EEEecCC-Ccc
Confidence 5 222222 456789999999999999888 6899999999987654 2333333 468
Q ss_pred EEEEeC--CeE-EEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceE---EEEEEecCCCCCCCCCCCC-------
Q 041325 364 CLAVVS--NLL-FSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVK---CLTAVVDSDYSNRNSDHSS------- 430 (450)
Q Consensus 364 ~~~~~~--~~l-~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~---~l~~~~~~~~~~~~~~~~~------- 430 (450)
+++|++ ++| ++++.|+.|++||+.++ +.+..+..|..+.. .+.+.|++... ....++.
T Consensus 248 ~~~~s~dg~~l~~s~~~d~~v~v~d~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~fs~~~~~~~~ 318 (391)
T 1l0q_A 248 GIAVTPDGKKVYVALSFXNTVSVIDTATN--------TITATMAVGKNPYASGQFIGSIPVQPVY-PSADFKSNITSGYI 318 (391)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTT--------EEEEEEECSSSEECCSSCEEECSSCCCC-CBCCEEESCCSSEE
T ss_pred EEEEccCCCEEEEEcCCCCEEEEEECCCC--------cEEEEEECCcCCCccceeeecccccccc-cccccccccccccc
Confidence 888884 455 67789999999999875 56666666655432 13333332210 0111111
Q ss_pred ---ceEEEEEcccCCcEEEEEe
Q 041325 431 ---TSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 431 ---~~~~l~s~~~Dg~i~iw~l 449 (450)
+...+...+.|..+++|++
T Consensus 319 ~~~~~~~~~~~~~~~~~~~W~~ 340 (391)
T 1l0q_A 319 FLSEPVQFTDLSKDATEWKWDF 340 (391)
T ss_dssp ETTCCEEEEECCBSCSEEEEEC
T ss_pred cccceEEEEeCCCCceEEEEEC
Confidence 1136778888999999996
No 123
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=3e-29 Score=225.42 Aligned_cols=226 Identities=19% Similarity=0.234 Sum_probs=179.9
Q ss_pred eeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCC----eEEEEeecccccceEEEEEeec-CCcEEEEEcCCCcEE
Q 041325 205 TWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDF----RCLESVKNAHDDAINAIVVSKS-NDGFVYTGSADTKIK 279 (450)
Q Consensus 205 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~ 279 (450)
.+.+|.+.|++++|+|++++|++|+.||.|++||+.++ +....+. .|...|.+++|+|. +..+|++++.||.|+
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~ 84 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWR-AHDSSIVAIDWASPEYGRIIASASYDKTVK 84 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEE-CCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceec-cCCCcEEEEEEcCCCCCCEEEEEcCCCeEE
Confidence 34589999999999999999999999999999999876 4555666 79999999999985 256899999999999
Q ss_pred EEeCcchhhhc-cccchhhhhHhhcccceEEEEEcCC--CCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeecccc
Q 041325 280 VWKKLRAALQV-NKKHSLVQTLEKHKSAVTALALSTD--GTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALR 356 (450)
Q Consensus 280 vwd~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~~~~--~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 356 (450)
+||++.++... .........+..|...|.+++|+|+ +++|++++.||.|++||+++++.+.................
T Consensus 85 vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 164 (351)
T 3f3f_A 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA 164 (351)
T ss_dssp EEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred EEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence 99997754110 0111345666789999999999999 99999999999999999998765422111111111112233
Q ss_pred CCccceEEEEEe-----CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecC----CCCCCCCC
Q 041325 357 GHTKAILCLAVV-----SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDS----DYSNRNSD 427 (450)
Q Consensus 357 ~~~~~v~~~~~~-----~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~----~~~~~~~~ 427 (450)
.|...+.+++|+ ++++++++.|+.+.+|+...+ ....+..+.+|...|++++|+|++ .
T Consensus 165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~------~~~~~~~~~~h~~~i~~~~~~p~~~~~~~------- 231 (351)
T 3f3f_A 165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDG------KLHVAAKLPGHKSLIRSISWAPSIGRWYQ------- 231 (351)
T ss_dssp SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTS------CEEEEEECCCCCSCEEEEEECCCSSCSSE-------
T ss_pred CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCC------ceeeeeecCCCCcceeEEEECCCCCCcce-------
Confidence 678889999997 459999999999988877653 335578888999999999999998 6
Q ss_pred CCCceEEEEEcccCCcEEEEEeC
Q 041325 428 HSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 428 ~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+|++|+.||.|++||++
T Consensus 232 ------~l~s~~~dg~i~iwd~~ 248 (351)
T 3f3f_A 232 ------LIATGCKDGRIRIFKIT 248 (351)
T ss_dssp ------EEEEEETTSCEEEEEEE
T ss_pred ------EEEEEcCCCeEEEEeCC
Confidence 89999999999999974
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.3e-29 Score=227.21 Aligned_cols=224 Identities=8% Similarity=0.012 Sum_probs=168.2
Q ss_pred CeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEE
Q 041325 138 DKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALA 217 (450)
Q Consensus 138 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 217 (450)
..+++|+.||+|++||+++++... .+. ...|.++.
T Consensus 49 ~~l~sg~~Dg~v~iwd~~~~~~~~----------------~~~-----------------------------~~~v~~~~ 83 (343)
T 3lrv_A 49 WVCMCRCEDGALHFTQLKDSKTIT----------------TIT-----------------------------TPNPRTGG 83 (343)
T ss_dssp EEEEEEEETTEEEEEEESSSSCEE----------------EEE-----------------------------EECCCTTC
T ss_pred CEEEEECCCCcEEEEECCCCcEEE----------------EEe-----------------------------cCCceeee
Confidence 349999999999999999874211 110 12566677
Q ss_pred EccCCCEEEEEeCCCcEEEEecC---------CCeEEEEeecccccceEEEEEee--cCCcEEEEEcCCCcEEEEeCcch
Q 041325 218 LSSDGSLLYSTSWDRTFKIWRTS---------DFRCLESVKNAHDDAINAIVVSK--SNDGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 218 ~~~~~~~l~~~~~dg~i~iwd~~---------~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~ 286 (450)
++|+ +++++.|++|++|+.. +++.+..+...|...|.+++++| ++. ++++++.||.|++||++++
T Consensus 84 ~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~ 159 (343)
T 3lrv_A 84 EHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDD 159 (343)
T ss_dssp CCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSS
T ss_pred eCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCC
Confidence 7777 8999999999999665 55555566556778899999998 544 8999999999999999876
Q ss_pred hhhccccchhhhhH-hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccC-CccceEE
Q 041325 287 ALQVNKKHSLVQTL-EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG-HTKAILC 364 (450)
Q Consensus 287 ~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~ 364 (450)
+ ..... ..+...+.+++|+|++++|++|+.||.|++||+++++.+ ...+.. |...|++
T Consensus 160 ~--------~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~------------~~~~~~~h~~~v~~ 219 (343)
T 3lrv_A 160 S--------QYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA------------SSRFPVDEEAKIKE 219 (343)
T ss_dssp C--------EEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC------------CEECCCCTTSCEEE
T ss_pred c--------EEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC------------ccEEeccCCCCEEE
Confidence 6 22222 234567999999999999999999999999999987633 124455 9999999
Q ss_pred EEEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceE--EEEEEecCCCCCCCCCCCCceEEEEEccc
Q 041325 365 LAVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVK--CLTAVVDSDYSNRNSDHSSTSFLVYSGSL 440 (450)
Q Consensus 365 ~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~--~l~~~~~~~~~~~~~~~~~~~~~l~s~~~ 440 (450)
++|+++ +|++++ |+.|++||+++... ...+..+..|...+. +++|+|+++ +|++++.
T Consensus 220 l~fs~~g~~l~s~~-~~~v~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~-------------~l~~~s~ 280 (343)
T 3lrv_A 220 VKFADNGYWMVVEC-DQTVVCFDLRKDVG-----TLAYPTYTIPEFKTGTVTYDIDDSGK-------------NMIAYSN 280 (343)
T ss_dssp EEECTTSSEEEEEE-SSBEEEEETTSSTT-----CBSSCCCBC-----CCEEEEECTTSS-------------EEEEEET
T ss_pred EEEeCCCCEEEEEe-CCeEEEEEcCCCCc-----ceeecccccccccccceEEEECCCCC-------------EEEEecC
Confidence 999854 899999 55999999997521 111222223444444 699999999 8999888
Q ss_pred -CCcEEEEEe
Q 041325 441 -DCEIKIWQI 449 (450)
Q Consensus 441 -Dg~i~iw~l 449 (450)
|+.|++|++
T Consensus 281 ~d~~i~v~~~ 290 (343)
T 3lrv_A 281 ESNSLTIYKF 290 (343)
T ss_dssp TTTEEEEEEE
T ss_pred CCCcEEEEEE
Confidence 999999987
No 125
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=3.8e-27 Score=202.12 Aligned_cols=157 Identities=11% Similarity=0.087 Sum_probs=119.4
Q ss_pred eecCCCceEEEEEcc---CCCEEEEEeCCCcEEEEecCCCeEEEEeeccc--ccceEEEEEeecCCcEE-----------
Q 041325 206 WVHHVDTVSALALSS---DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAH--DDAINAIVVSKSNDGFV----------- 269 (450)
Q Consensus 206 ~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~l----------- 269 (450)
+..|...+..++|++ ++.+|++++.|++|+|||+.+++++..+...+ ...+.+++|+|++. ++
T Consensus 174 ~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~-~lvs~s~~~~~w~ 252 (356)
T 2w18_A 174 QFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGL-LFIVLSHPCAKES 252 (356)
T ss_dssp EEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTE-EEEEEC-------
T ss_pred eccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCC-EEEEeccCCCcce
Confidence 346888999999999 78999999999999999999999999997322 34677889998543 43
Q ss_pred -EEEcCCCcEEEEeCcchhhhccccchhhhhH-----hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCC
Q 041325 270 -YTGSADTKIKVWKKLRAALQVNKKHSLVQTL-----EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGD 343 (450)
Q Consensus 270 -~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~-----~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 343 (450)
++|+.|++|++||..+++ .+..+ .+|...+.+..+ ++.++++|+.|++|+|||+.+++++
T Consensus 253 laSGs~D~tIklWd~~tgk--------~l~v~~~~~p~Gh~~~~lsg~~--sg~~lASgS~DgTIkIWDl~tGk~l---- 318 (356)
T 2w18_A 253 ESLRSPVFQLIVINPKTTL--------SVGVMLYCLPPGQAGRFLEGDV--KDHCAAAILTSGTIAIWDLLLGQCT---- 318 (356)
T ss_dssp -----CCEEEEEEETTTTE--------EEEEEEECCCTTCCCCEEEEEE--ETTEEEEEETTSCEEEEETTTCSEE----
T ss_pred eeccCCCcEEEEEECCCCE--------EEEEEEeeccCCCcceeEcccc--CCCEEEEEcCCCcEEEEECCCCcEE----
Confidence 678899999999998765 22211 345544444444 4789999999999999999999866
Q ss_pred CCCCceeeeccccCCccceE-EEEEeCC--eEEEEeCCCeEEEeeC
Q 041325 344 DDSGHMVLKGALRGHTKAIL-CLAVVSN--LLFSGSSDNTIRIWRR 386 (450)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~v~-~~~~~~~--~l~s~~~dg~v~iwd~ 386 (450)
..+.+|...+. +++|+++ +|++|+.|++|+|||+
T Consensus 319 ---------~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 319 ---------ALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ---------EEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred ---------EEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 56777877654 5889865 9999999999999985
No 126
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=1.3e-26 Score=214.91 Aligned_cols=251 Identities=16% Similarity=0.194 Sum_probs=195.4
Q ss_pred CCCCCccceeeeEEe---ecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCce
Q 041325 56 QAPAASEHQCSATLK---VKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAV 130 (450)
Q Consensus 56 ~~~~~~~~~~~~~l~---~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 130 (450)
..+...+++.++.+. +.+|...|.+++| +++++++++.||.|++||+++++.... +..|...+
T Consensus 147 ~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~------------~~~~~~~~ 214 (433)
T 3bws_A 147 DVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKAT------------VDLTGKWS 214 (433)
T ss_dssp EEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEE------------EECSSSSE
T ss_pred EEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEE------------EcCCCCCe
Confidence 334444455555221 2389999999999 789999999999999999998876655 55788899
Q ss_pred EEEEEeCCe--E-EEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeee
Q 041325 131 KSLVVLGDK--L-FSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWV 207 (450)
Q Consensus 131 ~~l~~~~~~--l-~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (450)
.+++|+++. + ++++.|+.|++||+.+++ .+..+.
T Consensus 215 ~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~----------------~~~~~~--------------------------- 251 (433)
T 3bws_A 215 KILLYDPIRDLVYCSNWISEDISVIDRKTKL----------------EIRKTD--------------------------- 251 (433)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTE----------------EEEECC---------------------------
T ss_pred eEEEEcCCCCEEEEEecCCCcEEEEECCCCc----------------EEEEec---------------------------
Confidence 999999876 5 455589999999998873 222221
Q ss_pred cCCCceEEEEEccCCCEEEEEe--------CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEE
Q 041325 208 HHVDTVSALALSSDGSLLYSTS--------WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIK 279 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 279 (450)
+...+.+++|+|+++++++++ .|+.|++||+.+++.+..+. +...+.+++|+|+++.++++++.++.|+
T Consensus 252 -~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~~~~~~~~v~ 328 (433)
T 3bws_A 252 -KIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG--PPGNKRHIVSGNTENKIYVSDMCCSKIE 328 (433)
T ss_dssp -CCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE--EEECEEEEEECSSTTEEEEEETTTTEEE
T ss_pred -CCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc--CCCCcceEEECCCCCEEEEEecCCCEEE
Confidence 233589999999999999888 58899999999998877764 6668899999987666778889999999
Q ss_pred EEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC---------------CCcEEEEEcCCCceeeeCCC
Q 041325 280 VWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC---------------DRSILVWERDQGNYIVDGDD 344 (450)
Q Consensus 280 vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~---------------dg~i~vwd~~~~~~~~~~~~ 344 (450)
+||+.+++ ....+. +...+.+++|+|++++|++++. ||.|++||+.+++.+
T Consensus 329 v~d~~~~~--------~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~----- 394 (433)
T 3bws_A 329 VYDLKEKK--------VQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK----- 394 (433)
T ss_dssp EEETTTTE--------EEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEE-----
T ss_pred EEECCCCc--------EEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEE-----
Confidence 99997665 233332 5677999999999999988876 579999999988755
Q ss_pred CCCceeeeccccCCccceEEEEEeC--CeEEEEe-CCCeEEEeeCC
Q 041325 345 DSGHMVLKGALRGHTKAILCLAVVS--NLLFSGS-SDNTIRIWRRS 387 (450)
Q Consensus 345 ~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~-~dg~v~iwd~~ 387 (450)
..+.. ...+.+++|++ ++|++++ .|+.|++|+++
T Consensus 395 --------~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 395 --------EFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp --------EEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred --------EEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 22222 35688999984 4777766 49999999986
No 127
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.95 E-value=3.7e-26 Score=209.45 Aligned_cols=272 Identities=13% Similarity=0.052 Sum_probs=201.3
Q ss_pred cceEEEEE---eCCEEEEee----CCC----cEEEecC--CCCCceeeeecCCCCcceeEEecCCCceEEEEEe------
Q 041325 76 SYIPSLAI---AGKLLYGGS----SNG----EIRAWNR--DPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL------ 136 (450)
Q Consensus 76 ~~v~~~~~---d~~~l~tgs----~dg----~v~vw~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~------ 136 (450)
..+....| ..+++++|+ .|| .|++||+ .+++.+.. ..+.+|...+..+++.
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~d~~~ 132 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ----------NSYKVNKQWLRYAGHTASDEVF 132 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEE----------EEEEECGGGHHHHHHHHHHHHH
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEee----------eEEEcChhHHHHHHHHHHHHHH
Confidence 45555566 245777876 467 8999999 88775422 1256777777776665
Q ss_pred ----------CCeEEEEeCC------CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEee
Q 041325 137 ----------GDKLFSAHQD------HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRR 200 (450)
Q Consensus 137 ----------~~~l~s~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (450)
+..++.++.+ +.|++||++...
T Consensus 133 ~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~------------------------------------------ 170 (415)
T 2hqs_A 133 EKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN------------------------------------------ 170 (415)
T ss_dssp HHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS------------------------------------------
T ss_pred HHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC------------------------------------------
Confidence 3446666554 799999997541
Q ss_pred cceeeeecCCCceEEEEEccCCCEEEEEeCCC---cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCc
Q 041325 201 HKKCTWVHHVDTVSALALSSDGSLLYSTSWDR---TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTK 277 (450)
Q Consensus 201 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 277 (450)
...+..|...+.+++|+|+|++|++++.++ .|++||+.+++... +. .+...+.+++|+|++..++++++.++.
T Consensus 171 --~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l~-~~~~~~~~~~~spdg~~la~~~~~~g~ 246 (415)
T 2hqs_A 171 --QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VA-SFPRHNGAPAFSPDGSKLAFALSKTGS 246 (415)
T ss_dssp --CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EE-CCSSCEEEEEECTTSSEEEEEECTTSS
T ss_pred --CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-ee-cCCCcccCEEEcCCCCEEEEEEecCCC
Confidence 123345788999999999999999999875 99999999988754 43 577889999999976645557776665
Q ss_pred --EEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC-CC--cEEEEEcCCCceeeeCCCCCCceeee
Q 041325 278 --IKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC-DR--SILVWERDQGNYIVDGDDDSGHMVLK 352 (450)
Q Consensus 278 --i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~ 352 (450)
|++||+.+++ ...+..+...+.+++|+|||++|++++. ++ .|++||+.+++..
T Consensus 247 ~~i~~~d~~~~~---------~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~------------- 304 (415)
T 2hqs_A 247 LNLYVMDLASGQ---------IRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ------------- 304 (415)
T ss_dssp CEEEEEETTTCC---------EEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-------------
T ss_pred ceEEEEECCCCC---------EEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-------------
Confidence 9999987654 2344557788999999999999988876 44 6788898876422
Q ss_pred ccccCCccceEEEEEeC--CeEEEEeCC---CeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCC
Q 041325 353 GALRGHTKAILCLAVVS--NLLFSGSSD---NTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSD 427 (450)
Q Consensus 353 ~~~~~~~~~v~~~~~~~--~~l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~ 427 (450)
.+..+...+.+++|++ ++|++++.+ +.|++||+.++ +. ..+..|. .+.+++|+|+++
T Consensus 305 -~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~--------~~-~~l~~~~-~~~~~~~spdg~------- 366 (415)
T 2hqs_A 305 -RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG--------GV-QVLSSTF-LDETPSLAPNGT------- 366 (415)
T ss_dssp -ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC--------CE-EECCCSS-SCEEEEECTTSS-------
T ss_pred -EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC--------CE-EEecCCC-CcCCeEEcCCCC-------
Confidence 2344566788899985 477777764 58999999874 22 3455554 899999999999
Q ss_pred CCCceEEEEEcccCC---cEEEEEe
Q 041325 428 HSSTSFLVYSGSLDC---EIKIWQI 449 (450)
Q Consensus 428 ~~~~~~~l~s~~~Dg---~i~iw~l 449 (450)
+|++++.|+ .|++||+
T Consensus 367 ------~l~~~s~~~~~~~l~~~d~ 385 (415)
T 2hqs_A 367 ------MVIYSSSQGMGSVLNLVST 385 (415)
T ss_dssp ------EEEEEEEETTEEEEEEEET
T ss_pred ------EEEEEEcCCCccEEEEEEC
Confidence 888888877 7999986
No 128
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=4.1e-25 Score=202.54 Aligned_cols=273 Identities=14% Similarity=0.018 Sum_probs=203.3
Q ss_pred cCCCCC--ccceeeeEEeecCCCcceEEEEEe----------------CCEEEEeeCC------CcEEEecCCCCCceee
Q 041325 55 KQAPAA--SEHQCSATLKVKGNSSYIPSLAIA----------------GKLLYGGSSN------GEIRAWNRDPNNYVNI 110 (450)
Q Consensus 55 ~~~~~~--~~~~~~~~l~~~~h~~~v~~~~~d----------------~~~l~tgs~d------g~v~vw~~~~~~~~~~ 110 (450)
...+.. .+++++....+.+|...+..+++. +..++.++.+ +.|++||++.... ..
T Consensus 95 i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~-~~ 173 (415)
T 2hqs_A 95 YQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ-FV 173 (415)
T ss_dssp EEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC-EE
T ss_pred EEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCC-EE
Confidence 345555 666777443344999888887763 7788877765 7999999975442 22
Q ss_pred eecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCC---eEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcc
Q 041325 111 TSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDH---KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDR 185 (450)
Q Consensus 111 ~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (450)
+.+|...|.+++|+|++ |++++.|+ .|++||+.+++..
T Consensus 174 ------------l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~------------------------- 216 (415)
T 2hqs_A 174 ------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR------------------------- 216 (415)
T ss_dssp ------------EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-------------------------
T ss_pred ------------EeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE-------------------------
Confidence 56788999999999887 88888875 9999999987321
Q ss_pred eeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEE-EEeCCCc--EEEEecCCCeEEEEeecccccceEEEEEe
Q 041325 186 FTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLY-STSWDRT--FKIWRTSDFRCLESVKNAHDDAINAIVVS 262 (450)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 262 (450)
.+..|...+.+++|+|+|+.|+ +++.++. |.+||+.+++. ..+. .+...+.+++|+
T Consensus 217 -------------------~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~-~~~~~~~~~~~s 275 (415)
T 2hqs_A 217 -------------------QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVT-DGRSNNTEPTWF 275 (415)
T ss_dssp -------------------EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECC-CCSSCEEEEEEC
T ss_pred -------------------EeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCc-CCCCcccceEEC
Confidence 1234667899999999999887 6666654 99999998876 3444 577889999999
Q ss_pred ecCCcEEEEEcC-CC--cEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC---CcEEEEEcCCC
Q 041325 263 KSNDGFVYTGSA-DT--KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD---RSILVWERDQG 336 (450)
Q Consensus 263 ~~~~~~l~~~~~-dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d---g~i~vwd~~~~ 336 (450)
|++. .|+.++. ++ .|.+||+.+++ ...+..+...+.+++|+|+|++|++++.+ ..|++||+.++
T Consensus 276 pdg~-~l~~~s~~~g~~~i~~~d~~~~~---------~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~ 345 (415)
T 2hqs_A 276 PDSQ-NLAFTSDQAGRPQVYKVNINGGA---------PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 345 (415)
T ss_dssp TTSS-EEEEEECTTSSCEEEEEETTSSC---------CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred CCCC-EEEEEECCCCCcEEEEEECCCCC---------EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC
Confidence 9655 5555544 55 67777876654 12233355678899999999999988764 58999999987
Q ss_pred ceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCC---eEEEeeCCCCccccCCCceeEEEecCCCcceE
Q 041325 337 NYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDN---TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVK 411 (450)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg---~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~ 411 (450)
+.. .+..+. .+.+++|++ ++|++++.++ .|++||+.. .....+..|.+.|.
T Consensus 346 ~~~--------------~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g---------~~~~~l~~~~~~v~ 401 (415)
T 2hqs_A 346 GVQ--------------VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDG---------RFKARLPATDGQVK 401 (415)
T ss_dssp CEE--------------ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTS---------CCEEECCCSSSEEE
T ss_pred CEE--------------EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCC---------CcEEEeeCCCCCCc
Confidence 532 233343 788899985 4788877776 799999874 45677889999999
Q ss_pred EEEEEecCC
Q 041325 412 CLTAVVDSD 420 (450)
Q Consensus 412 ~l~~~~~~~ 420 (450)
+++|+|...
T Consensus 402 ~~~~~~~~~ 410 (415)
T 2hqs_A 402 FPAWSPYLH 410 (415)
T ss_dssp EEEECCCCC
T ss_pred CCccccccc
Confidence 999999865
No 129
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.94 E-value=5.8e-25 Score=207.55 Aligned_cols=284 Identities=13% Similarity=0.165 Sum_probs=211.0
Q ss_pred eEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEe-cCCCceEEEEEeCCe--EEEEeCCCeEEEEEc
Q 041325 78 IPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVAT-GNGDAVKSLVVLGDK--LFSAHQDHKIRVWKI 154 (450)
Q Consensus 78 v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~ 154 (450)
+..+..++.++++++.|++|.+||..+++++.. +. ++. +..++|++++ |++++.|++|++||+
T Consensus 142 ~~~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~------------i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~ 207 (543)
T 1nir_A 142 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKV------------IDTGYA--VHISRMSASGRYLLVIGRDARIDMIDL 207 (543)
T ss_dssp CSCCCGGGEEEEEEGGGTEEEEEETTTCCEEEE------------EECSTT--EEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred ccccCCCCEEEEEEcCCCeEEEEECCCceEEEE------------EecCcc--cceEEECCCCCEEEEECCCCeEEEEEC
Confidence 333333788999999999999999999987665 33 333 8899999887 999999999999999
Q ss_pred --CCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc----CCCEEEEE
Q 041325 155 --DNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS----DGSLLYST 228 (450)
Q Consensus 155 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~ 228 (450)
.+. ..+..++ +...+..++|+| +|++++++
T Consensus 208 ~~~t~----------------~~~~~i~----------------------------~g~~p~~va~sp~~~~dg~~l~v~ 243 (543)
T 1nir_A 208 WAKEP----------------TKVAEIK----------------------------IGIEARSVESSKFKGYEDRYTIAG 243 (543)
T ss_dssp TSSSC----------------EEEEEEE----------------------------CCSEEEEEEECCSTTCTTTEEEEE
T ss_pred cCCCC----------------cEEEEEe----------------------------cCCCcceEEeCCCcCCCCCEEEEE
Confidence 555 2222221 334678999999 99999988
Q ss_pred e-CCCcEEEEecCCCeEEEEeecc---------c-ccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhh
Q 041325 229 S-WDRTFKIWRTSDFRCLESVKNA---------H-DDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLV 297 (450)
Q Consensus 229 ~-~dg~i~iwd~~~~~~~~~~~~~---------~-~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~ 297 (450)
+ .++.|.+||..+++++..+... | ...+..+.++|++..++++...++.|.+||+.+.+.. .+
T Consensus 244 ~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l------~~ 317 (543)
T 1nir_A 244 AYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNL------TV 317 (543)
T ss_dssp EEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSC------EE
T ss_pred EccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcc------ee
Confidence 8 4899999999999998887621 2 2368899999977778899999999999998765410 01
Q ss_pred hhHhhcccceEEEEEcCCCCEEEEee-CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe---CCeEE
Q 041325 298 QTLEKHKSAVTALALSTDGTVLYSGA-CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV---SNLLF 373 (450)
Q Consensus 298 ~~~~~~~~~i~~l~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~l~ 373 (450)
..+ .+...+..++|+|+|++|++++ .+++|.+||..+++.+..+. .....|.+....+ ++ +..++
T Consensus 318 ~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~---------~g~~ph~g~g~~~-~~p~~g~~~~ 386 (543)
T 1nir_A 318 TSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD---------VGKTPHPGRGANF-VHPKYGPVWS 386 (543)
T ss_dssp EEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE---------CSSSBCCTTCEEE-EETTTEEEEE
T ss_pred EEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeec---------cCCCCCCCCCccc-CCCCCccEEE
Confidence 122 2456678899999999876654 58999999999988652111 1112354444343 23 23666
Q ss_pred EEe-CCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcc-------cCCcEE
Q 041325 374 SGS-SDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGS-------LDCEIK 445 (450)
Q Consensus 374 s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~-------~Dg~i~ 445 (450)
++. .|++|.+||+.+... ....++++..+.+|...+..++++|+++ +|++++ .+++|.
T Consensus 387 s~~~~d~~V~v~d~~~~~~-~~~~~~~v~~l~~~g~~~~~v~~~pdg~-------------~l~v~~~~~~~~~~~~~v~ 452 (543)
T 1nir_A 387 TSHLGDGSISLIGTDPKNH-PQYAWKKVAELQGQGGGSLFIKTHPKSS-------------HLYVDTTFNPDARISQSVA 452 (543)
T ss_dssp EEBSSSSEEEEEECCTTTC-TTTBTSEEEEEECSCSCCCCEECCTTCC-------------EEEECCTTCSSHHHHTCEE
T ss_pred eccCCCceEEEEEeCCCCC-chhcCeEEEEEEcCCCCceEEEcCCCCC-------------cEEEecCCCCCcccCceEE
Confidence 665 689999999986211 0223689999999999999999999999 899887 378999
Q ss_pred EEEeC
Q 041325 446 IWQIR 450 (450)
Q Consensus 446 iw~l~ 450 (450)
+||++
T Consensus 453 v~d~~ 457 (543)
T 1nir_A 453 VFDLK 457 (543)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 99974
No 130
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.93 E-value=1.2e-23 Score=198.48 Aligned_cols=314 Identities=12% Similarity=0.074 Sum_probs=212.3
Q ss_pred CCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecC--CCCCceeeeecCCCCcceeEEecCCCceE
Q 041325 56 QAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNR--DPNNYVNITSTDVGDHANVVATGNGDAVK 131 (450)
Q Consensus 56 ~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 131 (450)
......++++++++. .+.. +.+++| ||++|++++.|+.|++||+ .+++.+.. +. +...+.
T Consensus 162 ~v~D~~t~~~~~~i~--~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~------------i~-~g~~p~ 225 (543)
T 1nir_A 162 ALVDGDSKKIVKVID--TGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAE------------IK-IGIEAR 225 (543)
T ss_dssp EEEETTTCCEEEEEE--CSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEE------------EE-CCSEEE
T ss_pred EEEECCCceEEEEEe--cCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEE------------Ee-cCCCcc
Confidence 344556778888887 3333 888888 8999999999999999999 66654443 22 455789
Q ss_pred EEEEeC----Ce--EEEEe-CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeeccee
Q 041325 132 SLVVLG----DK--LFSAH-QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKC 204 (450)
Q Consensus 132 ~l~~~~----~~--l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (450)
.++|+| ++ +++++ .+++|.+||..+.+. +..++.... ...
T Consensus 226 ~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~----------------~~~i~~~g~-----------------~~~ 272 (543)
T 1nir_A 226 SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP----------------KQIVSTRGM-----------------TVD 272 (543)
T ss_dssp EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE----------------EEEEECCEE-----------------CSS
T ss_pred eEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc----------------ceeecccCc-----------------ccC
Confidence 999998 66 77776 489999999988743 222221000 000
Q ss_pred eeecC-CCceEEEEEccCCCE-EEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEe
Q 041325 205 TWVHH-VDTVSALALSSDGSL-LYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWK 282 (450)
Q Consensus 205 ~~~~~-~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd 282 (450)
....| ...+..+.+++++.. +++...++.|.+||+.+.+.+......+...+..+.|+|++..+++++..++.|.+||
T Consensus 273 ~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D 352 (543)
T 1nir_A 273 TQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVID 352 (543)
T ss_dssp SCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred ccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEE
Confidence 00012 237889999997654 5566788999999998876544222135667889999997664566677789999999
Q ss_pred CcchhhhccccchhhhhHhh----cccceEEEEEcCC-CCEEEEee-CCCcEEEEEcCCCceeeeCCCCCCceeeecccc
Q 041325 283 KLRAALQVNKKHSLVQTLEK----HKSAVTALALSTD-GTVLYSGA-CDRSILVWERDQGNYIVDGDDDSGHMVLKGALR 356 (450)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~----~~~~i~~l~~~~~-~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 356 (450)
..+++ ++..+.. |......+ ++|+ +.+++++. .|++|.+||+.+.+. ..........+.
T Consensus 353 ~~tg~--------l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~------~~~~~~~v~~l~ 417 (543)
T 1nir_A 353 SKDRR--------LSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNH------PQYAWKKVAELQ 417 (543)
T ss_dssp TTTTE--------EEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTC------TTTBTSEEEEEE
T ss_pred CCCCe--------EEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCC------chhcCeEEEEEE
Confidence 98876 3333321 43333333 4676 66667765 589999999987210 001122346777
Q ss_pred CCccceEEEEEeCC--eEEEEe-------CCCeEEEeeCCCCccccCCCceeEEE-----ecCCCcceEEEEEEecCCCC
Q 041325 357 GHTKAILCLAVVSN--LLFSGS-------SDNTIRIWRRSSSVTDHQKGYSCLAV-----LEGHRRPVKCLTAVVDSDYS 422 (450)
Q Consensus 357 ~~~~~v~~~~~~~~--~l~s~~-------~dg~v~iwd~~~~~~~~~~~~~~~~~-----~~~h~~~v~~l~~~~~~~~~ 422 (450)
.|...+..+.++++ +|++++ .+++|.+||+.+.. ...+.+.. +..+...+..++|+|+++
T Consensus 418 ~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~----~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~-- 491 (543)
T 1nir_A 418 GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLD----AKYQVLPIAEWADLGEGAKRVVQPEYNKRGD-- 491 (543)
T ss_dssp CSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTT----SCCEEECHHHHHCCCSSCCEEEEEEECSSSS--
T ss_pred cCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCC----CCeEEeechhhcccCCCCCceEeccCCCCCC--
Confidence 78788888888855 888877 37899999999852 11111100 245678899999999999
Q ss_pred CCCCCCCCceEEEEEc-----ccCCcEEEEEeC
Q 041325 423 NRNSDHSSTSFLVYSG-----SLDCEIKIWQIR 450 (450)
Q Consensus 423 ~~~~~~~~~~~~l~s~-----~~Dg~i~iw~l~ 450 (450)
.++.+ +.|+.|.|||.+
T Consensus 492 -----------~~~~s~~~~~~~~~~i~v~D~~ 513 (543)
T 1nir_A 492 -----------EVWFSVWNGKNDSSALVVVDDK 513 (543)
T ss_dssp -----------EEEEEEECCTTSCCEEEEEETT
T ss_pred -----------EEEEEeecCCCCCCeEEEEECC
Confidence 55543 358999999964
No 131
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.92 E-value=1e-22 Score=181.44 Aligned_cols=275 Identities=11% Similarity=0.124 Sum_probs=185.3
Q ss_pred CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeC-CCeEEEEEcCCCceeE
Q 041325 85 GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQ-DHKIRVWKIDNNTSAY 161 (450)
Q Consensus 85 ~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~-dg~i~iw~~~~~~~~~ 161 (450)
+..+++++.++.|++||..+++.... ...+...+ .++|++++ +++++. ++.|.+||..+++..
T Consensus 10 ~~~~v~~~~~~~v~~~d~~~~~~~~~------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~- 75 (331)
T 3u4y_A 10 NFGIVVEQHLRRISFFSTDTLEILNQ------------ITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK- 75 (331)
T ss_dssp CEEEEEEGGGTEEEEEETTTCCEEEE------------EECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE-
T ss_pred CEEEEEecCCCeEEEEeCcccceeee------------EEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee-
Confidence 44577888899999999999887665 33344566 99999876 555554 899999999877320
Q ss_pred EeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCC---cEEEEe
Q 041325 162 YSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDR---TFKIWR 238 (450)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd 238 (450)
...+..+..+..+++|+|++++++++..++ .|.+||
T Consensus 76 -----------------------------------------~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d 114 (331)
T 3u4y_A 76 -----------------------------------------VVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYS 114 (331)
T ss_dssp -----------------------------------------EEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEE
T ss_pred -----------------------------------------EEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEE
Confidence 111223444555599999999999655553 899999
Q ss_pred cCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCc-EEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCC
Q 041325 239 TSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTK-IKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGT 317 (450)
Q Consensus 239 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~ 317 (450)
+.+++.+..+. ......+++|+|+++.++++...++. |.+|++.......... ...+ .....+..++|+|+|+
T Consensus 115 ~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~---~~~~-~~~~~~~~~~~spdg~ 188 (331)
T 3u4y_A 115 FLKNKFISTIP--IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTG---QEFI-SGGTRPFNITFTPDGN 188 (331)
T ss_dssp TTTTEEEEEEE--CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEE---EEEE-CSSSSEEEEEECTTSS
T ss_pred CCCCCeEEEEE--CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecC---Cccc-cCCCCccceEECCCCC
Confidence 99999888776 34567999999976656666677788 9999986533110000 1111 2345578999999999
Q ss_pred EEEEe-eCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEE-EEeCCCeEEEeeCCCCcccc
Q 041325 318 VLYSG-ACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLF-SGSSDNTIRIWRRSSSVTDH 393 (450)
Q Consensus 318 ~l~~g-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~-s~~~dg~v~iwd~~~~~~~~ 393 (450)
+++++ ..++.|++||+.+++.. .....+. ....+..++|++ ++++ +...++.|.+||..++..
T Consensus 189 ~l~v~~~~~~~v~v~d~~~~~~~----------~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~-- 255 (331)
T 3u4y_A 189 FAFVANLIGNSIGILETQNPENI----------TLLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTL-- 255 (331)
T ss_dssp EEEEEETTTTEEEEEECSSTTSC----------EEEEEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEE--
T ss_pred EEEEEeCCCCeEEEEECCCCccc----------ceeeecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCce--
Confidence 66554 46899999999987651 0012222 224556788874 4554 444678899999987521
Q ss_pred CCCceeEEEecCC----Ccc---eEEEEEEecCCCCCCCCCCCCceEEE-EEcccCCcEEEEEeC
Q 041325 394 QKGYSCLAVLEGH----RRP---VKCLTAVVDSDYSNRNSDHSSTSFLV-YSGSLDCEIKIWQIR 450 (450)
Q Consensus 394 ~~~~~~~~~~~~h----~~~---v~~l~~~~~~~~~~~~~~~~~~~~~l-~s~~~Dg~i~iw~l~ 450 (450)
..+..+..+ ... ...++|+|+++ +| +++..++.|.+||+.
T Consensus 256 ----~~~~~~~~~~~~~~~~~~~~~~~~~spdg~-------------~l~v~~~~~~~v~v~d~~ 303 (331)
T 3u4y_A 256 ----SFVKSFGHGLLIDPRPLFGANQMALNKTET-------------KLFISANISRELKVFTIS 303 (331)
T ss_dssp ----EEEEEEECCCCCCCGGGTTCCCEEECTTSS-------------EEEEEETTTTEEEEEETT
T ss_pred ----eeecccccccccCCCCcccccceEECCCCC-------------EEEEecCCCCcEEEEEec
Confidence 113332222 222 35689999998 55 555567799999974
No 132
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.92 E-value=2.7e-22 Score=179.61 Aligned_cols=276 Identities=12% Similarity=0.195 Sum_probs=181.3
Q ss_pred EEEEeeCCCcEEEecCCC-CCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCC-CeEEEEEcC--CCcee
Q 041325 87 LLYGGSSNGEIRAWNRDP-NNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQD-HKIRVWKID--NNTSA 160 (450)
Q Consensus 87 ~l~tgs~dg~v~vw~~~~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d-g~i~iw~~~--~~~~~ 160 (450)
++++++.|+.|++|+++. +..... ....|...+.+++|++++ |++++.+ +.|.+|+++ ++..
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~- 74 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLT-----------QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL- 74 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEE-----------EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEe-----------eeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce-
Confidence 455557899999999863 322111 123567789999999876 7777776 999999998 3321
Q ss_pred EEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeC-CCcEEEEec
Q 041325 161 YYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSW-DRTFKIWRT 239 (450)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~ 239 (450)
..+.. +. ....+..++|+|+++++++++. ++.|.+||+
T Consensus 75 -------------~~~~~---------------------------~~-~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 75 -------------TFAAE---------------------------SA-LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp -------------EEEEE---------------------------EE-CSSCCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred -------------eeccc---------------------------cc-cCCCCcEEEEcCCCCEEEEEecCCCeEEEEEC
Confidence 11111 11 1226789999999998877664 889999999
Q ss_pred C---CCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc-hhhhccccchhhh--hHh-hcccceEEEEE
Q 041325 240 S---DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR-AALQVNKKHSLVQ--TLE-KHKSAVTALAL 312 (450)
Q Consensus 240 ~---~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~--~~~-~~~~~i~~l~~ 312 (450)
. ..+....+. ....+.+++|+|++..+++++..++.|++||+.+ ++.. ... ... .....+..++|
T Consensus 114 ~~~~~~~~~~~~~--~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 185 (343)
T 1ri6_A 114 EDGLPVGVVDVVE--GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLV------AQDPAEVTTVEGAGPRHMVF 185 (343)
T ss_dssp ETTEEEEEEEEEC--CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEE------EEEEEEEECSTTCCEEEEEE
T ss_pred CCCcccccccccc--CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCcee------eecccccccCCCCCcceEEE
Confidence 4 334444443 3456889999986654444444899999999976 3310 000 111 12346788999
Q ss_pred cCCCCEEEEee-CCCcEEEEEcCC--CceeeeCCCCCCceeeecccc-C--CccceEEEEEeCC--eEE-EEeCCCeEEE
Q 041325 313 STDGTVLYSGA-CDRSILVWERDQ--GNYIVDGDDDSGHMVLKGALR-G--HTKAILCLAVVSN--LLF-SGSSDNTIRI 383 (450)
Q Consensus 313 ~~~~~~l~~g~-~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~-~--~~~~v~~~~~~~~--~l~-s~~~dg~v~i 383 (450)
+|+++++++++ .++.|.+|++.. ++... ......+. + ....+.+++|+++ +|+ ++..++.|++
T Consensus 186 ~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~--------~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v 257 (343)
T 1ri6_A 186 HPNEQYAYCVNELNSSVDVWELKDPHGNIEC--------VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITV 257 (343)
T ss_dssp CTTSSEEEEEETTTTEEEEEESSCTTSCCEE--------EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCcEEE--------EeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEE
Confidence 99999776554 789999999963 32110 00111111 1 1345667888844 555 5668999999
Q ss_pred eeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcc-cCCcEEEEEe
Q 041325 384 WRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGS-LDCEIKIWQI 449 (450)
Q Consensus 384 wd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~-~Dg~i~iw~l 449 (450)
||+... ....+.+..+..+.. +..++|+|+++ +|++++ .|+.|.+|++
T Consensus 258 ~d~~~~----~~~~~~~~~~~~~~~-~~~~~~s~dg~-------------~l~~~~~~~~~v~v~~~ 306 (343)
T 1ri6_A 258 FSVSED----GSVLSKEGFQPTETQ-PRGFNVDHSGK-------------YLIAAGQKSHHISVYEI 306 (343)
T ss_dssp EEECTT----SCCEEEEEEEECSSS-CCCEEECTTSS-------------EEEEECTTTCEEEEEEE
T ss_pred EEEcCC----CCceEEeeeecCCCc-cceEEECCCCC-------------EEEEecCCCCeEEEEEE
Confidence 999831 112345555555544 88999999998 676666 7899999965
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.91 E-value=9.6e-23 Score=201.85 Aligned_cols=286 Identities=10% Similarity=0.087 Sum_probs=197.6
Q ss_pred CcceEEEEE--eCCEEEEeeC-CC-----cEEEecCCCCCceeeeecCCCCc--ceeEE----------ecCCCceEEEE
Q 041325 75 SSYIPSLAI--AGKLLYGGSS-NG-----EIRAWNRDPNNYVNITSTDVGDH--ANVVA----------TGNGDAVKSLV 134 (450)
Q Consensus 75 ~~~v~~~~~--d~~~l~tgs~-dg-----~v~vw~~~~~~~~~~~~~~~~~~--~~~~~----------~~h~~~v~~l~ 134 (450)
...|.+++| ||++|++++. || .|++||+.+++............ ..+.. ......|.+++
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 115 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ 115 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence 457899999 8999999998 88 89999999988655532111000 00000 00013488999
Q ss_pred EeCCe--EEEEeCCCeEEEEEcCCC---ceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecC
Q 041325 135 VLGDK--LFSAHQDHKIRVWKIDNN---TSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHH 209 (450)
Q Consensus 135 ~~~~~--l~s~~~dg~i~iw~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (450)
|+||+ |++++. +.|++||+.++ .. ..+..|
T Consensus 116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~--------------------------------------------~~l~~~ 150 (741)
T 2ecf_A 116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAV--------------------------------------------RQLTHG 150 (741)
T ss_dssp ECTTSSEEEEEET-TEEEEEESSSCSTTSC--------------------------------------------CBCCCS
T ss_pred ECCCCCEEEEEeC-CcEEEEECCCCCcceE--------------------------------------------EEcccC
Confidence 99987 666665 99999999876 21 112246
Q ss_pred CCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccc----------------eEEEEEeecCCcEEEEEc
Q 041325 210 VDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDA----------------INAIVVSKSNDGFVYTGS 273 (450)
Q Consensus 210 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----------------v~~~~~~~~~~~~l~~~~ 273 (450)
...+..++|+|||++|+.++ ++.|.+||+.+++...... .+... +..+.|+|++. .|++++
T Consensus 151 ~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~-~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~-~l~~~~ 227 (741)
T 2ecf_A 151 EGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTA-DGSTTIGNGIAEFVADEEMDRHTGYWWAPDDS-AIAYAR 227 (741)
T ss_dssp SSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCC-CCCSSEEESCCCHHHHHHSCCCCSEEECTTSS-CEEEEE
T ss_pred CcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEecc-CCccceeccccceeeeeccccccceEECCCCC-EEEEEE
Confidence 66899999999999999887 5699999999887665443 22221 47899999655 666665
Q ss_pred CCC---------------------------------cEEEEeCcc-hhhhccccchhhhhHhhcccceEEEEEcCCCCEE
Q 041325 274 ADT---------------------------------KIKVWKKLR-AALQVNKKHSLVQTLEKHKSAVTALALSTDGTVL 319 (450)
Q Consensus 274 ~dg---------------------------------~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l 319 (450)
.|+ .|.+||+.+ ++.. .+.....+...+..++| |||++|
T Consensus 228 ~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~------~~~~~~~~~~~~~~~~~-pDg~~l 300 (741)
T 2ecf_A 228 IDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQ------WIDLGKEQDIYLARVNW-RDPQHL 300 (741)
T ss_dssp EECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCE------EECCCSCSSEEEEEEEE-EETTEE
T ss_pred EcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceE------EecCCCCcceEEEEEEe-CCCCEE
Confidence 554 788899876 5411 01101136678999999 999999
Q ss_pred EEeeC-----CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCcc----ceEEEEEe--CCeEEEEeCCCeEEEeeCCC
Q 041325 320 YSGAC-----DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK----AILCLAVV--SNLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 320 ~~g~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~--~~~l~s~~~dg~v~iwd~~~ 388 (450)
++++. +..|++||+.+++... .+..+.. .+..++|+ ++++++++.||.++||.+..
T Consensus 301 ~~~~~~~~~~~~~i~~~d~~~g~~~~-------------~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~ 367 (741)
T 2ecf_A 301 SFQRQSRDQKKLDLVEVTLASNQQRV-------------LAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDS 367 (741)
T ss_dssp EEEEEETTSSEEEEEEEETTTCCEEE-------------EEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECS
T ss_pred EEEEecccCCeEEEEEEECCCCceEE-------------EEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcC
Confidence 97754 5679999999876541 1122221 34567777 44888999999888887763
Q ss_pred CccccCCCceeEEEecCCCcceEEE-EEEecCCCCCCCCCCCCceEEE-EEcccCC--cEEEEEe
Q 041325 389 SVTDHQKGYSCLAVLEGHRRPVKCL-TAVVDSDYSNRNSDHSSTSFLV-YSGSLDC--EIKIWQI 449 (450)
Q Consensus 389 ~~~~~~~~~~~~~~~~~h~~~v~~l-~~~~~~~~~~~~~~~~~~~~~l-~s~~~Dg--~i~iw~l 449 (450)
. .. ...+..|...|..+ .|+|+++ .| ++++.|+ .++||++
T Consensus 368 ~-------~~-~~~l~~~~~~v~~~~~~s~dg~-------------~l~~~~~~~~~~~~~l~~~ 411 (741)
T 2ecf_A 368 K-------GK-AAALTHGNWSVDELLAVDEKAG-------------LAYFRAGIESARESQIYAV 411 (741)
T ss_dssp S-------SC-EEESCCSSSCEEEEEEEETTTT-------------EEEEEECSSCTTCBEEEEE
T ss_pred C-------CC-eeeeeecceEEEeEeEEeCCCC-------------EEEEEEeCCCCceEEEEEE
Confidence 1 13 56677788888887 5999998 55 5566666 8999986
No 134
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.91 E-value=1.6e-22 Score=207.00 Aligned_cols=370 Identities=13% Similarity=0.054 Sum_probs=241.8
Q ss_pred cccCCcccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcce-------E
Q 041325 7 FPMPCRRNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSYI-------P 79 (450)
Q Consensus 7 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~v-------~ 79 (450)
++.-...+..+.|+|++..++..+....- .............++ .+++. +|...+ .
T Consensus 48 lt~~~~~v~~~~~SPDG~~la~~s~~~~~--------------~~~~~i~~~d~~~g~-~~~lt--~~~~~~~~~~~~~~ 110 (1045)
T 1k32_A 48 IVSNLGVINNARFFPDGRKIAIRVMRGSS--------------LNTADLYFYNGENGE-IKRIT--YFSGKSTGRRMFTD 110 (1045)
T ss_dssp EECSSSEEEEEEECTTSSEEEEEEEESTT--------------CCEEEEEEEETTTTE-EEECC--CCCEEEETTEECSE
T ss_pred eeeCCCcccCeEECCCCCEEEEEEeeccC--------------CCCCeEEEEECCCCC-eEEcc--cCCCcccccccccc
Confidence 33333456788899999888875433100 000111111222223 45566 888888 8
Q ss_pred EEEE--eCCEEEEeeCC------CcEEEecCCCCCceeeeecCC------------------------------------
Q 041325 80 SLAI--AGKLLYGGSSN------GEIRAWNRDPNNYVNITSTDV------------------------------------ 115 (450)
Q Consensus 80 ~~~~--d~~~l~tgs~d------g~v~vw~~~~~~~~~~~~~~~------------------------------------ 115 (450)
+++| ||+++++++.+ ..|++|++.+++.........
T Consensus 111 ~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~~ 190 (1045)
T 1k32_A 111 VAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWIE 190 (1045)
T ss_dssp EEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEEE
T ss_pred cccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEEE
Confidence 9999 78888888754 358888887665432211100
Q ss_pred -CCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEEEcCCCce-eEEeccCcccccceeeeeeccCCCcceeEeeec
Q 041325 116 -GDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVWKIDNNTS-AYYSTSGKLKNKYYERIATLPTLNDRFTKCFLA 192 (450)
Q Consensus 116 -~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (450)
.......+.+|...+.++.|+++. +++++.|+.+++|.++.... ........ ..... .+.. ++...+. ..
T Consensus 191 ~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~----~~~~~-~~Sp-DG~~la~-~~ 263 (1045)
T 1k32_A 191 VNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT----DYYPR-HLNT-DGRRILF-SK 263 (1045)
T ss_dssp EETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCC----SSCEE-EEEE-SSSCEEE-EE
T ss_pred CCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCC----Cccee-eEcC-CCCEEEE-Ee
Confidence 001122346889999999999988 56777889999998764221 11111110 00111 1111 1111111 12
Q ss_pred CceEEEeeccee---ee-----------ecCCCceEEEEEc-cCCCEEEEEeCCCcEEEEecCCCeEEEEeeccccc-ce
Q 041325 193 NNYVQVRRHKKC---TW-----------VHHVDTVSALALS-SDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDD-AI 256 (450)
Q Consensus 193 ~~~~~~~~~~~~---~~-----------~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~v 256 (450)
+..+.++..... .+ ..|...+.+++|+ |+|++++.++ ++.|.+|++..++... +. .+.. .+
T Consensus 264 ~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~-~~~~~~~ 340 (1045)
T 1k32_A 264 GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VP-EPLRIRY 340 (1045)
T ss_dssp TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CS-CCSCEEE
T ss_pred CCEEEEecCCceEeeeeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-cc-CCCcceE
Confidence 333333321111 11 1244578999999 9999999888 8899999998877554 43 4555 88
Q ss_pred EEEEEeecCCcEEEEEcCCCcEE-EEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCC
Q 041325 257 NAIVVSKSNDGFVYTGSADTKIK-VWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQ 335 (450)
Q Consensus 257 ~~~~~~~~~~~~l~~~~~dg~i~-vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~ 335 (450)
..++|+ + +..++.++.++.+. +||+..++ . ..+..+...+..++|+|||++|++++.++.|++||+.+
T Consensus 341 ~~~~~s-d-g~~l~~~s~~~~l~~~~d~~~~~--------~-~~l~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~t 409 (1045)
T 1k32_A 341 VRRGGD-T-KVAFIHGTREGDFLGIYDYRTGK--------A-EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET 409 (1045)
T ss_dssp EEECSS-S-EEEEEEEETTEEEEEEEETTTCC--------E-EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred EeeeEc-C-CCeEEEEECCCceEEEEECCCCC--------c-eEecCCccceeeeEECCCCCEEEEECCCCeEEEEECCC
Confidence 999998 4 44677777788888 88986544 1 12225678899999999999999999999999999998
Q ss_pred CceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCC----------eEEEeeCCCCccccCCCceeEEEe
Q 041325 336 GNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDN----------TIRIWRRSSSVTDHQKGYSCLAVL 403 (450)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg----------~v~iwd~~~~~~~~~~~~~~~~~~ 403 (450)
++.. .....|...+.+++|+++ +|++++.++ .|++||+.++ + ...+
T Consensus 410 g~~~-------------~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g--------~-~~~l 467 (1045)
T 1k32_A 410 GKPT-------------VIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR--------K-IFAA 467 (1045)
T ss_dssp CCEE-------------EEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT--------E-EEEC
T ss_pred CceE-------------EeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC--------c-EEEe
Confidence 7644 334467888889999854 787777654 8999999864 3 5667
Q ss_pred cCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 404 EGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 404 ~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
..|...+..++|+|+++ +|+.++.++..++|+.
T Consensus 468 ~~~~~~~~~~~~spdG~-------------~l~~~s~~~~~~~~~~ 500 (1045)
T 1k32_A 468 TTENSHDYAPAFDADSK-------------NLYYLSYRSLDPSPDR 500 (1045)
T ss_dssp SCSSSBEEEEEECTTSC-------------EEEEEESCCCCCEECS
T ss_pred eCCCcccCCceEcCCCC-------------EEEEEecccCCcCcch
Confidence 78888899999999999 8999998888888763
No 135
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.90 E-value=1e-22 Score=178.27 Aligned_cols=254 Identities=12% Similarity=0.065 Sum_probs=181.6
Q ss_pred EeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCC-CceeEEeccC
Q 041325 90 GGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDN-NTSAYYSTSG 166 (450)
Q Consensus 90 tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~-~~~~~~~~~~ 166 (450)
+++.|+.|++||+.+++... +..|...|.+++|+|++ |++++ ++.|++||+.+ ++..
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~-------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~------ 76 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV-------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPE------ 76 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE-------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCE------
T ss_pred CCCcceeEEEEeCCCCceee-------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCce------
Confidence 35678999999998877543 34678899999999887 55554 88999999988 6321
Q ss_pred cccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecC-CCceEEEEEccCCCEEEEEe--CCCcEEEE--ecCC
Q 041325 167 KLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHH-VDTVSALALSSDGSLLYSTS--WDRTFKIW--RTSD 241 (450)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~--~dg~i~iw--d~~~ 241 (450)
... ..+ ...+.+++|+|++++|++++ .++...|| +..+
T Consensus 77 ----------~~~---------------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~ 119 (297)
T 2ojh_A 77 ----------KVD---------------------------TGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTG 119 (297)
T ss_dssp ----------ECC---------------------------CTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTC
T ss_pred ----------Eec---------------------------cccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCC
Confidence 110 122 35788999999999999998 33455555 4455
Q ss_pred CeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEE
Q 041325 242 FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYS 321 (450)
Q Consensus 242 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~ 321 (450)
++ ...+. ....+..++|+|++..+++++..++.+++|+++... . ....+..+...+.+++|+|++++|+.
T Consensus 120 ~~-~~~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~----~---~~~~~~~~~~~~~~~~~s~dg~~l~~ 189 (297)
T 2ojh_A 120 GT-PRLMT--KNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS----G---VETRLTHGEGRNDGPDYSPDGRWIYF 189 (297)
T ss_dssp CC-CEECC--SSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTT----C---CEEECCCSSSCEEEEEECTTSSEEEE
T ss_pred Cc-eEEee--cCCCccceEECCCCCEEEEEECCCCceEEEEEECCC----C---cceEcccCCCccccceECCCCCEEEE
Confidence 44 33443 334588899999766556688889999999864322 0 12334456678999999999998887
Q ss_pred ee-CCCcEEEEEcC-CCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCC-----------CeEEEeeC
Q 041325 322 GA-CDRSILVWERD-QGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSD-----------NTIRIWRR 386 (450)
Q Consensus 322 g~-~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~d-----------g~v~iwd~ 386 (450)
++ .++.+++|++. .+..+ ..+..|...+.++.|++ ++|++++.+ +.|++||+
T Consensus 190 ~~~~~~~~~i~~~~~~~~~~-------------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~ 256 (297)
T 2ojh_A 190 NSSRTGQMQIWRVRVDGSSV-------------ERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDM 256 (297)
T ss_dssp EECTTSSCEEEEEETTSSCE-------------EECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEET
T ss_pred EecCCCCccEEEECCCCCCc-------------EEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEec
Confidence 66 58999999986 33222 34556677888899985 477777765 56999999
Q ss_pred CCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCC
Q 041325 387 SSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDC 442 (450)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg 442 (450)
.++ ....+..+.+|...+.+++|+|+++ +|++++.|.
T Consensus 257 ~~~------~~~~~~~~~~~~~~~~~~~~spdg~-------------~l~~~~~~~ 293 (297)
T 2ojh_A 257 DGG------NVETLFDLFGGQGTMNSPNWSPDGD-------------EFAYVRYFP 293 (297)
T ss_dssp TSC------SCEEEEEEEESTTTSCSCCBCTTSS-------------EEEEEEECC
T ss_pred CCC------CceeeeccCCCCcccccceECCCCC-------------EEEEEEecc
Confidence 864 2344555667888999999999999 787777654
No 136
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.90 E-value=3.9e-22 Score=197.45 Aligned_cols=288 Identities=10% Similarity=0.067 Sum_probs=189.4
Q ss_pred cceEEEEE--eCCEEEEeeCCCcEEEecCCCC---CceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCe
Q 041325 76 SYIPSLAI--AGKLLYGGSSNGEIRAWNRDPN---NYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHK 148 (450)
Q Consensus 76 ~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~---~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~ 148 (450)
..|.+++| ||++|++++. +.|++||+.++ +... +..|...+..++|+||+ |+.++ ++.
T Consensus 109 ~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~-------------l~~~~~~~~~~~~SPDG~~la~~~-~~~ 173 (741)
T 2ecf_A 109 TGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQ-------------LTHGEGFATDAKLSPKGGFVSFIR-GRN 173 (741)
T ss_dssp EESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCB-------------CCCSSSCEEEEEECTTSSEEEEEE-TTE
T ss_pred cCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEE-------------cccCCcccccccCCCCCCEEEEEe-CCc
Confidence 34788888 8999999987 99999999887 4322 34677789999999988 66555 679
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST 228 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 228 (450)
|++||+.+++........ ..... ..............+..++|+|||++|+++
T Consensus 174 i~~~d~~~g~~~~~~~~~----------------~~~~~-----------~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~ 226 (741)
T 2ecf_A 174 LWVIDLASGRQMQLTADG----------------STTIG-----------NGIAEFVADEEMDRHTGYWWAPDDSAIAYA 226 (741)
T ss_dssp EEEEETTTTEEEECCCCC----------------CSSEE-----------ESCCCHHHHHHSCCCCSEEECTTSSCEEEE
T ss_pred EEEEecCCCCEEEeccCC----------------cccee-----------ccccceeeeeccccccceEECCCCCEEEEE
Confidence 999999887432111100 00000 000000000011235789999999999998
Q ss_pred eCCC---------------------------------cEEEEecCC-CeEEEEeec-ccccceEEEEEeecCCcEEEEEc
Q 041325 229 SWDR---------------------------------TFKIWRTSD-FRCLESVKN-AHDDAINAIVVSKSNDGFVYTGS 273 (450)
Q Consensus 229 ~~dg---------------------------------~i~iwd~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~ 273 (450)
+.|+ .|.+||+.+ ++....... .+...+..++| |++..+++++.
T Consensus 227 ~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~ 305 (741)
T 2ecf_A 227 RIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQ 305 (741)
T ss_dssp EEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEE
T ss_pred EEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEe
Confidence 7665 789999988 775544331 36778999999 97664443332
Q ss_pred ----CCCcEEEEeCcchhhhccccchhhhhHhhccc----ceEEEEEcCCCCEEEEeeCCCcEEEEEcC-CCceeeeCCC
Q 041325 274 ----ADTKIKVWKKLRAALQVNKKHSLVQTLEKHKS----AVTALALSTDGTVLYSGACDRSILVWERD-QGNYIVDGDD 344 (450)
Q Consensus 274 ----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~----~i~~l~~~~~~~~l~~g~~dg~i~vwd~~-~~~~~~~~~~ 344 (450)
.+..|++||+.+++ ....+..+.. .+..++|+|||+++++++.||.+++|.+. +++ .
T Consensus 306 ~~~~~~~~i~~~d~~~g~--------~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~----- 371 (741)
T 2ecf_A 306 SRDQKKLDLVEVTLASNQ--------QRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-A----- 371 (741)
T ss_dssp ETTSSEEEEEEEETTTCC--------EEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC-E-----
T ss_pred cccCCeEEEEEEECCCCc--------eEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC-e-----
Confidence 36789999997765 2222222222 34688999999999999999988888765 222 2
Q ss_pred CCCceeeeccccCCccceEEE-EEeCC--eE-EEEeCCC--eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEec
Q 041325 345 DSGHMVLKGALRGHTKAILCL-AVVSN--LL-FSGSSDN--TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVD 418 (450)
Q Consensus 345 ~~~~~~~~~~~~~~~~~v~~~-~~~~~--~l-~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 418 (450)
..+..|...+..+ .|+++ .| ++++.++ .+++|++... ......+.. ...+..++|+|+
T Consensus 372 --------~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~-------g~~~~~l~~-~~~~~~~~~spd 435 (741)
T 2ecf_A 372 --------AALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQ-------GGQPQRLSK-APGMHSASFARN 435 (741)
T ss_dssp --------EESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETT-------CCCCEECCC-SCSEEEEEECTT
T ss_pred --------eeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcC-------CCCeeeccc-CCCceEEEECCC
Confidence 3455667777776 47744 45 5566665 8999998642 122344444 566889999999
Q ss_pred CCCCCCCCCCCCceEEEEEcccC----CcEEEEEe
Q 041325 419 SDYSNRNSDHSSTSFLVYSGSLD----CEIKIWQI 449 (450)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~s~~~D----g~i~iw~l 449 (450)
++ +|+....+ +.+.+|++
T Consensus 436 g~-------------~l~~~~~~~~~p~~~~l~~~ 457 (741)
T 2ecf_A 436 AS-------------VYVDSWSNNSTPPQIELFRA 457 (741)
T ss_dssp SS-------------EEEEEEEETTEEEEEEEEET
T ss_pred CC-------------EEEEEecCCCCCCeEEEEEc
Confidence 98 55554333 35777764
No 137
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.90 E-value=1.2e-21 Score=174.92 Aligned_cols=266 Identities=9% Similarity=0.099 Sum_probs=184.1
Q ss_pred CEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCC-ceEEEEEeCCe---EEEEeCCCeEEEEEcCCCceeE
Q 041325 86 KLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGD-AVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSAY 161 (450)
Q Consensus 86 ~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~ 161 (450)
++|++++.++.|++||+.+++...... .++.. .+..++|++++ ++++..++.|.+||+.+++..
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~-----------~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~- 69 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVIT-----------IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETL- 69 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEE-----------CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEE-
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEE-----------cCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeE-
Confidence 578999999999999999887655411 12222 47889999876 456666899999999887432
Q ss_pred EeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe------------
Q 041325 162 YSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS------------ 229 (450)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------------ 229 (450)
..+..... ..|...+.+++|+|++++++++.
T Consensus 70 ---------------~~~~~~~~----------------------~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 112 (337)
T 1pby_B 70 ---------------GRIDLSTP----------------------EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEV 112 (337)
T ss_dssp ---------------EEEECCBT----------------------TEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred ---------------eeEEcCCc----------------------ccccccccceEECCCCCEEEEEecccccccccccc
Confidence 11110000 00122466789999999988886
Q ss_pred CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEE
Q 041325 230 WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTA 309 (450)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 309 (450)
.++.|.+||+.+++.+..+. ....+.+++|+|++. +++++ ++.|.+||+.+++. ...+..+. ....
T Consensus 113 ~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg~-~l~~~--~~~i~~~d~~~~~~--------~~~~~~~~-~~~~ 178 (337)
T 1pby_B 113 QPTRVALYDAETLSRRKAFE--APRQITMLAWARDGS-KLYGL--GRDLHVMDPEAGTL--------VEDKPIQS-WEAE 178 (337)
T ss_dssp CCCEEEEEETTTTEEEEEEE--CCSSCCCEEECTTSS-CEEEE--SSSEEEEETTTTEE--------EEEECSTT-TTTT
T ss_pred cCceEEEEECCCCcEEEEEe--CCCCcceeEECCCCC-EEEEe--CCeEEEEECCCCcE--------eeeeeccc-cCCC
Confidence 57999999999998887776 345678899998555 55555 68899999977652 21111111 0012
Q ss_pred EEEcCCCCEEEEeeCCC------------------------cEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEE
Q 041325 310 LALSTDGTVLYSGACDR------------------------SILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL 365 (450)
Q Consensus 310 l~~~~~~~~l~~g~~dg------------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 365 (450)
+.|+|+++.++..+.++ .|.+||+.+++.. ......+...+.++
T Consensus 179 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~------------~~~~~~~~~~~~~~ 246 (337)
T 1pby_B 179 TYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA------------MREVRIMDVFYFST 246 (337)
T ss_dssp TBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE------------EEEEEECSSCEEEE
T ss_pred ceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce------------EeecCCCCCceeeE
Confidence 36789888776554333 4688999877542 12233455667788
Q ss_pred EEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCc
Q 041325 366 AVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCE 443 (450)
Q Consensus 366 ~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~ 443 (450)
+|+++ +++++ ++.|++||+.++ +.+..+.. ...+.+++|+|+++ +|++++.|+.
T Consensus 247 ~~s~dg~~l~~~--~~~v~~~d~~~~--------~~~~~~~~-~~~~~~~~~s~dg~-------------~l~~~~~~~~ 302 (337)
T 1pby_B 247 AVNPAKTRAFGA--YNVLESFDLEKN--------ASIKRVPL-PHSYYSVNVSTDGS-------------TVWLGGALGD 302 (337)
T ss_dssp EECTTSSEEEEE--ESEEEEEETTTT--------EEEEEEEC-SSCCCEEEECTTSC-------------EEEEESBSSE
T ss_pred EECCCCCEEEEe--CCeEEEEECCCC--------cCcceecC-CCceeeEEECCCCC-------------EEEEEcCCCc
Confidence 88854 77776 799999999874 44455543 34678999999998 8888899999
Q ss_pred EEEEEeC
Q 041325 444 IKIWQIR 450 (450)
Q Consensus 444 i~iw~l~ 450 (450)
|++||++
T Consensus 303 i~v~d~~ 309 (337)
T 1pby_B 303 LAAYDAE 309 (337)
T ss_dssp EEEEETT
T ss_pred EEEEECc
Confidence 9999974
No 138
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.90 E-value=3.2e-22 Score=183.89 Aligned_cols=166 Identities=16% Similarity=0.095 Sum_probs=124.3
Q ss_pred cCCCceEEEEEccCCCEEE----EEeCCCcEEEEecCCC--------eE---EEEeecccccceEEEEEeecCCcEEEEE
Q 041325 208 HHVDTVSALALSSDGSLLY----STSWDRTFKIWRTSDF--------RC---LESVKNAHDDAINAIVVSKSNDGFVYTG 272 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~l~----~~~~dg~i~iwd~~~~--------~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 272 (450)
.+...|.+++|+|++++|+ +|+.|+.|++||+.++ +. +..+. +|...|.+++|+|....+|+++
T Consensus 90 ~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~v~~~p~~~~~las~ 168 (434)
T 2oit_A 90 PMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLK-DAGGMVIDMKWNPTVPSMVAVC 168 (434)
T ss_dssp CCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCC-SGGGSEEEEEECSSCTTEEEEE
T ss_pred cCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccC-CCCCceEEEEECCCCCCEEEEE
Confidence 3667899999999999999 7888999999998764 22 23333 6899999999999767799999
Q ss_pred cCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeee
Q 041325 273 SADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLK 352 (450)
Q Consensus 273 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 352 (450)
+.||.|++||++++. .......|...|++++|+|+|++|++|+.||.|++||.+ ++.........
T Consensus 169 s~Dg~v~iwD~~~~~--------~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~------ 233 (434)
T 2oit_A 169 LADGSIAVLQVTETV--------KVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPP------ 233 (434)
T ss_dssp ETTSCEEEEEESSSE--------EEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCT------
T ss_pred ECCCeEEEEEcCCCc--------ceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCc------
Confidence 999999999997764 233334578899999999999999999999999999998 43321110000
Q ss_pred ccccCCccceEEEEEeCC--eE-EEEeCCCe------EEEeeCCCC
Q 041325 353 GALRGHTKAILCLAVVSN--LL-FSGSSDNT------IRIWRRSSS 389 (450)
Q Consensus 353 ~~~~~~~~~v~~~~~~~~--~l-~s~~~dg~------v~iwd~~~~ 389 (450)
.....|...|.+++|+++ ++ +....||. +++|++...
T Consensus 234 ~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 234 FYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred ccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 001134558999999966 33 23444433 899999864
No 139
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=2.1e-20 Score=167.99 Aligned_cols=266 Identities=9% Similarity=0.087 Sum_probs=184.7
Q ss_pred CCcceEEEEE--eCCEEEEeeC-------CCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---EE
Q 041325 74 NSSYIPSLAI--AGKLLYGGSS-------NGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---LF 141 (450)
Q Consensus 74 h~~~v~~~~~--d~~~l~tgs~-------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~ 141 (450)
....+..+++ +++++++++. ++.|.+||..+++...... ....+..++|++++ ++
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-------------~~~~~~~~~~s~dg~~l~v 105 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH-------------NDLKPFGATINNTTQTLWF 105 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE-------------ESSCCCSEEEETTTTEEEE
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe-------------cCCCcceEEECCCCCEEEE
Confidence 4456788888 6888888774 5689999999988665521 12357788998765 45
Q ss_pred EEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC
Q 041325 142 SAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD 221 (450)
Q Consensus 142 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 221 (450)
+...++.|.+||..+++... .++..... ..-......+.+++|+|+
T Consensus 106 ~~~~~~~v~~~d~~~~~~~~----------------~~~~~~~~------------------~~~~~~~~~~~~~~~s~d 151 (353)
T 3vgz_A 106 GNTVNSAVTAIDAKTGEVKG----------------RLVLDDRK------------------RTEEVRPLQPRELVADDA 151 (353)
T ss_dssp EETTTTEEEEEETTTCCEEE----------------EEESCCCC------------------CCSSCCCCEEEEEEEETT
T ss_pred EecCCCEEEEEeCCCCeeEE----------------EEecCCCc------------------cccccCCCCCceEEECCC
Confidence 55668999999999884321 11110000 000001113688999999
Q ss_pred CCEEEEEe--CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhh
Q 041325 222 GSLLYSTS--WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQT 299 (450)
Q Consensus 222 ~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 299 (450)
++++++++ .++.|.+||..+++.+..+. .+...+..++|+|+++ .++++..++.|.+||..+++ ....
T Consensus 152 g~~l~~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~s~dg~-~l~~~~~~~~i~~~d~~~~~--------~~~~ 221 (353)
T 3vgz_A 152 TNTVYISGIGKESVIWVVDGGNIKLKTAIQ-NTGKMSTGLALDSEGK-RLYTTNADGELITIDTADNK--------ILSR 221 (353)
T ss_dssp TTEEEEEEESSSCEEEEEETTTTEEEEEEC-CCCTTCCCCEEETTTT-EEEEECTTSEEEEEETTTTE--------EEEE
T ss_pred CCEEEEEecCCCceEEEEcCCCCceEEEec-CCCCccceEEECCCCC-EEEEEcCCCeEEEEECCCCe--------EEEE
Confidence 99877776 47889999999999888776 3555688999998554 77788889999999997765 2222
Q ss_pred Hh----hcccceEEEEEcCCCCEEEEeeC-CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeE
Q 041325 300 LE----KHKSAVTALALSTDGTVLYSGAC-DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLL 372 (450)
Q Consensus 300 ~~----~~~~~i~~l~~~~~~~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l 372 (450)
+. ++...+..++|+|+++++++++. ++.|.+||..+++.+. .+..... .+++|+ ++++
T Consensus 222 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~-------------~~~~~~~--~~~~~s~dg~~l 286 (353)
T 3vgz_A 222 KKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILA-------------KVAAPES--LAVLFNPARNEA 286 (353)
T ss_dssp EECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEE-------------EEECSSC--CCEEEETTTTEE
T ss_pred EEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE-------------EEEcCCC--ceEEECCCCCEE
Confidence 22 24556788999999998777665 4899999999887552 1111111 356676 4444
Q ss_pred -EEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 373 -FSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 373 -~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
++...++.|.+||..++ +.+..+... ..+.+++|+|+++
T Consensus 287 ~v~~~~~~~v~~~d~~~~--------~~~~~~~~~-~~~~~~~~s~dg~ 326 (353)
T 3vgz_A 287 YVTHRQAGKVSVIDAKSY--------KVVKTFDTP-THPNSLALSADGK 326 (353)
T ss_dssp EEEETTTTEEEEEETTTT--------EEEEEEECC-SEEEEEEECTTSC
T ss_pred EEEECCCCeEEEEECCCC--------eEEEEEecC-CCCCeEEEcCCCC
Confidence 45557999999999874 555555543 4679999999998
No 140
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.89 E-value=2.3e-20 Score=167.43 Aligned_cols=269 Identities=14% Similarity=0.191 Sum_probs=179.1
Q ss_pred CCCcEEEecCCC--CCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeC---CCeEEEEEcCCCceeEEeccC
Q 041325 93 SNGEIRAWNRDP--NNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQ---DHKIRVWKIDNNTSAYYSTSG 166 (450)
Q Consensus 93 ~dg~v~vw~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~---dg~i~iw~~~~~~~~~~~~~~ 166 (450)
.++.|.+|+++. ++.... ....+...+..++|+|++ |++++. ++.|.+|++..+...
T Consensus 14 ~~~~i~v~~~d~~tg~~~~~-----------~~~~~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~------ 76 (347)
T 3hfq_A 14 TSQGIYQGTLDTTAKTLTND-----------GLLAATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAH------ 76 (347)
T ss_dssp SCCEEEEEEEETTTTEEEEE-----------EEEEECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEE------
T ss_pred CCCCEEEEEEcCCCCeEEEe-----------eeeeccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEE------
Confidence 356677777654 443322 123455678889999887 666655 689999999766321
Q ss_pred cccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe-CCCcEEEEecCC---C
Q 041325 167 KLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS-WDRTFKIWRTSD---F 242 (450)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~---~ 242 (450)
.+ ..+..+...+..++|+|+|++|++++ .++.|.+||+.. .
T Consensus 77 --------~~---------------------------~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~ 121 (347)
T 3hfq_A 77 --------KL---------------------------NTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGAL 121 (347)
T ss_dssp --------EE---------------------------EEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCE
T ss_pred --------Ee---------------------------eeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCe
Confidence 11 11123556788999999999888887 789999999962 2
Q ss_pred eEEEEeecc--------cccceEEEEEeecCCcEEEEEcCCCcEEEEeCc-chhhhccccchhhhhHhh-cccceEEEEE
Q 041325 243 RCLESVKNA--------HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKL-RAALQVNKKHSLVQTLEK-HKSAVTALAL 312 (450)
Q Consensus 243 ~~~~~~~~~--------~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~-~~~~i~~l~~ 312 (450)
+.+..+... ....+.+++|+|++. ++++...++.|++|++. +++.. ....+.. ....+..++|
T Consensus 122 ~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~------~~~~~~~~~g~~p~~~~~ 194 (347)
T 3hfq_A 122 TLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLS------EQSVLTMEAGFGPRHLVF 194 (347)
T ss_dssp EEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEE------EEEEEECCTTCCEEEEEE
T ss_pred eecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEE------EeeeEEcCCCCCCceEEE
Confidence 333333211 112488899999777 78888889999999987 33210 1111111 2235778999
Q ss_pred cCCCCEEEE-eeCCCcEEEEEcCC--CceeeeCCCCCCceeeeccccCC------ccceEEEEEeCC--eE-EEEeCCCe
Q 041325 313 STDGTVLYS-GACDRSILVWERDQ--GNYIVDGDDDSGHMVLKGALRGH------TKAILCLAVVSN--LL-FSGSSDNT 380 (450)
Q Consensus 313 ~~~~~~l~~-g~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~--~l-~s~~~dg~ 380 (450)
+|||++|++ +..++.|.+|++.. ++.. ........ ...+..++|+++ +| ++...++.
T Consensus 195 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~-----------~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~ 263 (347)
T 3hfq_A 195 SPDGQYAFLAGELSSQIASLKYDTQTGAFT-----------QLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNT 263 (347)
T ss_dssp CTTSSEEEEEETTTTEEEEEEEETTTTEEE-----------EEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTE
T ss_pred CCCCCEEEEEeCCCCEEEEEEecCCCCceE-----------EeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCE
Confidence 999996665 55688999999874 3321 11111111 145778888854 55 56667899
Q ss_pred EEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEccc-CCcEEEEEe
Q 041325 381 IRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSL-DCEIKIWQI 449 (450)
Q Consensus 381 v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~-Dg~i~iw~l 449 (450)
|.+|++... .....+..+..+...+..++|+|+++ +|++++. ++.|.+|++
T Consensus 264 v~v~~~~~~-----g~~~~~~~~~~~~~~~~~~~~spdg~-------------~l~v~~~~~~~v~v~~~ 315 (347)
T 3hfq_A 264 LAVFAVTAD-----GHLTLIQQISTEGDFPRDFDLDPTEA-------------FVVVVNQNTDNATLYAR 315 (347)
T ss_dssp EEEEEECGG-----GCEEEEEEEECSSSCCCEEEECTTSS-------------EEEEEETTTTEEEEEEE
T ss_pred EEEEEECCC-----CcEEEeEEEecCCCCcCeEEECCCCC-------------EEEEEEcCCCcEEEEEE
Confidence 999998732 12456666776777789999999999 7777665 589999965
No 141
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=99.88 E-value=1.4e-20 Score=192.62 Aligned_cols=320 Identities=9% Similarity=0.036 Sum_probs=215.1
Q ss_pred eeEEeecCCCcceEEEEE--eCCEEEEeeCC------CcEEEecCCCCCceeeeecCCCCcceeEEecCCCce-------
Q 041325 66 SATLKVKGNSSYIPSLAI--AGKLLYGGSSN------GEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAV------- 130 (450)
Q Consensus 66 ~~~l~~~~h~~~v~~~~~--d~~~l~tgs~d------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v------- 130 (450)
.+.+. +|...+.+++| ||++||.++.+ ..|++|++.+++... +..|...+
T Consensus 45 ~~~lt--~~~~~v~~~~~SPDG~~la~~s~~~~~~~~~~i~~~d~~~g~~~~-------------lt~~~~~~~~~~~~~ 109 (1045)
T 1k32_A 45 TRKIV--SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR-------------ITYFSGKSTGRRMFT 109 (1045)
T ss_dssp EEEEE--CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE-------------CCCCCEEEETTEECS
T ss_pred EEEee--eCCCcccCeEECCCCCEEEEEEeeccCCCCCeEEEEECCCCCeEE-------------cccCCCccccccccc
Confidence 45666 89999999999 89999988653 379999998876322 45677777
Q ss_pred EEEEEeCCe--EEEEeCC------CeEEEEEcCCCceeEEeccCcccc------------------------cceeee--
Q 041325 131 KSLVVLGDK--LFSAHQD------HKIRVWKIDNNTSAYYSTSGKLKN------------------------KYYERI-- 176 (450)
Q Consensus 131 ~~l~~~~~~--l~s~~~d------g~i~iw~~~~~~~~~~~~~~~~~~------------------------~~~~~~-- 176 (450)
..++|+||+ +++++.+ ..|..|++.++............. .....+
T Consensus 110 ~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~~~~~~~~~~g~~~~~lw~ 189 (1045)
T 1k32_A 110 DVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTFELPHWKGYRGGTRGKIWI 189 (1045)
T ss_dssp EEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCSCCTTSTTCCSTTCCEEEE
T ss_pred ccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCCCccccccccCCCcCCEEE
Confidence 999999887 5666544 358888887765432211100000 000000
Q ss_pred -------eeccCC----------CcceeEeeecCceEEEeec-----ceeeeecCCCceEEEEEccCCCEEEEEeCCCcE
Q 041325 177 -------ATLPTL----------NDRFTKCFLANNYVQVRRH-----KKCTWVHHVDTVSALALSSDGSLLYSTSWDRTF 234 (450)
Q Consensus 177 -------~~~~~~----------~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 234 (450)
..+... .+.+......++...++.. ....+..|. .+...+|+|+|++++.+. ++.|
T Consensus 190 ~~~~~~~~~l~~~~~~v~~~~~s~d~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i 267 (1045)
T 1k32_A 190 EVNSGAFKKIVDMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSI 267 (1045)
T ss_dssp EEETTEEEEEECCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEE
T ss_pred ECCCCCeEECcCCCCcccceEEeCCEEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEE
Confidence 000000 1111111122222233221 122333343 466779999999888875 8999
Q ss_pred EEEecCCCeEEEEeec----------ccccceEEEEEe-ecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhc
Q 041325 235 KIWRTSDFRCLESVKN----------AHDDAINAIVVS-KSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKH 303 (450)
Q Consensus 235 ~iwd~~~~~~~~~~~~----------~~~~~v~~~~~~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 303 (450)
.+||+...+ +..+.. .+...+.+++|+ |++. .+++++ ++.|.+|++..+. ...+..+
T Consensus 268 ~~~d~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~-~la~~~-~~~i~~~~~~~~~---------~~~~~~~ 335 (1045)
T 1k32_A 268 YIFNPDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGD-LIAFVS-RGQAFIQDVSGTY---------VLKVPEP 335 (1045)
T ss_dssp EEECTTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGG-CEEEEE-TTEEEEECTTSSB---------EEECSCC
T ss_pred EEecCCceE-eeeeccCcccccccccccccccceeeecCCCCC-EEEEEE-cCEEEEEcCCCCc---------eEEccCC
Confidence 999995443 334431 133478999999 8555 566555 7899999986554 1123445
Q ss_pred cc-ceEEEEEcCCCCEEEEeeCCCcEE-EEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCC
Q 041325 304 KS-AVTALALSTDGTVLYSGACDRSIL-VWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDN 379 (450)
Q Consensus 304 ~~-~i~~l~~~~~~~~l~~g~~dg~i~-vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg 379 (450)
.. .+..++|+ ||+.|+.++.++.+. +||+..++.. .+..|...+..++|++ ++|++++.++
T Consensus 336 ~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~--------------~l~~~~~~~~~~~~SpDG~~la~~~~~~ 400 (1045)
T 1k32_A 336 LRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE--------------KFEENLGNVFAMGVDRNGKFAVVANDRF 400 (1045)
T ss_dssp SCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE--------------ECCCCCCSEEEEEECTTSSEEEEEETTS
T ss_pred CcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce--------------EecCCccceeeeEECCCCCEEEEECCCC
Confidence 56 78999999 999999999888888 9998876432 2336778899999985 4899999999
Q ss_pred eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCC----------cEEEEEe
Q 041325 380 TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDC----------EIKIWQI 449 (450)
Q Consensus 380 ~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg----------~i~iw~l 449 (450)
.|++||+.++ +......+|...+.+++|+||++ +|++++.++ .|++||+
T Consensus 401 ~v~~~d~~tg--------~~~~~~~~~~~~v~~~~~SpDG~-------------~la~~~~~~~~~~~~~~~~~i~l~d~ 459 (1045)
T 1k32_A 401 EIMTVDLETG--------KPTVIERSREAMITDFTISDNSR-------------FIAYGFPLKHGETDGYVMQAIHVYDM 459 (1045)
T ss_dssp EEEEEETTTC--------CEEEEEECSSSCCCCEEECTTSC-------------EEEEEEEECSSTTCSCCEEEEEEEET
T ss_pred eEEEEECCCC--------ceEEeccCCCCCccceEECCCCC-------------eEEEEecCccccccCCCCCeEEEEEC
Confidence 9999999875 44555567999999999999999 888887654 8999997
Q ss_pred C
Q 041325 450 R 450 (450)
Q Consensus 450 ~ 450 (450)
+
T Consensus 460 ~ 460 (1045)
T 1k32_A 460 E 460 (1045)
T ss_dssp T
T ss_pred C
Confidence 3
No 142
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=3.8e-20 Score=165.61 Aligned_cols=276 Identities=10% Similarity=0.142 Sum_probs=178.4
Q ss_pred CCCcceEEEEE--eCCEEEEeeCC-CcEEEecCC--CCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEe-
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSN-GEIRAWNRD--PNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAH- 144 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~d-g~v~vw~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~- 144 (450)
.|...+.+++| ++++|++++.+ +.|++|+++ +++..... .+..+ ..+..++|++++ +++++
T Consensus 35 ~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~----------~~~~~-~~~~~~~~s~dg~~l~~~~~ 103 (343)
T 1ri6_A 35 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAA----------ESALP-GSLTHISTDHQGQFVFVGSY 103 (343)
T ss_dssp ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEE----------EEECS-SCCSEEEECTTSSEEEEEET
T ss_pred ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeecc----------ccccC-CCCcEEEEcCCCCEEEEEec
Confidence 57788999999 79988888876 999999987 44433221 12233 378999999876 65555
Q ss_pred CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCE
Q 041325 145 QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSL 224 (450)
Q Consensus 145 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 224 (450)
.++.|.+||+..+... .....+ .....+.+++|+|++++
T Consensus 104 ~~~~i~~~d~~~~~~~-------------~~~~~~----------------------------~~~~~~~~~~~s~dg~~ 142 (343)
T 1ri6_A 104 NAGNVSVTRLEDGLPV-------------GVVDVV----------------------------EGLDGCHSANISPDNRT 142 (343)
T ss_dssp TTTEEEEEEEETTEEE-------------EEEEEE----------------------------CCCTTBCCCEECTTSSE
T ss_pred CCCeEEEEECCCCccc-------------cccccc----------------------------cCCCCceEEEECCCCCE
Confidence 4899999999633110 111111 12335888999999998
Q ss_pred EEEEe-CCCcEEEEecCC-CeEEE----EeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc--hhhhccccchh
Q 041325 225 LYSTS-WDRTFKIWRTSD-FRCLE----SVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR--AALQVNKKHSL 296 (450)
Q Consensus 225 l~~~~-~dg~i~iwd~~~-~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~--~~~~~~~~~~~ 296 (450)
+++++ .++.|.+||+.+ ++... .+.......+..++|+|++..+++++..++.|.+|++.. ++... ...
T Consensus 143 l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~---~~~ 219 (343)
T 1ri6_A 143 LWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIEC---VQT 219 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEE---EEE
T ss_pred EEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEE---Eee
Confidence 88887 899999999987 54432 223233457889999986664556667899999999854 22100 001
Q ss_pred hhhHh---hcccceEEEEEcCCCCEEEE-eeCCCcEEEEEcCC--CceeeeCCCCCCceeeeccccCCccceEEEEEeC-
Q 041325 297 VQTLE---KHKSAVTALALSTDGTVLYS-GACDRSILVWERDQ--GNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS- 369 (450)
Q Consensus 297 ~~~~~---~~~~~i~~l~~~~~~~~l~~-g~~dg~i~vwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 369 (450)
...+. .....+..++|+|++++|++ +..++.|.+||+.. ++. .....+..+.. +.+++|++
T Consensus 220 ~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~-----------~~~~~~~~~~~-~~~~~~s~d 287 (343)
T 1ri6_A 220 LDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL-----------SKEGFQPTETQ-PRGFNVDHS 287 (343)
T ss_dssp EECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE-----------EEEEEEECSSS-CCCEEECTT
T ss_pred ccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCce-----------EEeeeecCCCc-cceEEECCC
Confidence 11111 11345678999999998875 44789999999983 221 12222333333 77888874
Q ss_pred -CeEEEEe-CCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 370 -NLLFSGS-SDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 370 -~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
++|++++ .++.|.+|++... ....+.+..+.. .....+++|.++.+
T Consensus 288 g~~l~~~~~~~~~v~v~~~d~~----~g~~~~~~~~~~-g~~p~~i~~~~~~~ 335 (343)
T 1ri6_A 288 GKYLIAAGQKSHHISVYEIVGE----QGLLHEKGRYAV-GQGPMWVVVNAHEG 335 (343)
T ss_dssp SSEEEEECTTTCEEEEEEEETT----TTEEEEEEEEEC-SSSCCEEEEEEEC-
T ss_pred CCEEEEecCCCCeEEEEEEcCC----CceeeEcccccc-CCCCeeEEEEcccC
Confidence 4677666 6899999966521 111344444443 24567888888765
No 143
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.88 E-value=1.5e-21 Score=192.88 Aligned_cols=282 Identities=10% Similarity=0.037 Sum_probs=183.1
Q ss_pred ceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCC---ceEEEEEeCCe--EEEEeCC---
Q 041325 77 YIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGD---AVKSLVVLGDK--LFSAHQD--- 146 (450)
Q Consensus 77 ~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~--l~s~~~d--- 146 (450)
.+.+++| ||+++++ +.||+|++||+.+++.... +.+|.. .|.+++|+||+ |++++.+
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~------------~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~ 84 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVL------------IEGKKIESLRAIRYEISPDREYALFSYNVEPI 84 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEE------------ECTTTTTTTTCSEEEECTTSSEEEEEESCCCC
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEE------------eccccccccccceEEECCCCCEEEEEecCccc
Confidence 3566777 7887766 7899999999998876554 344543 49999999987 7777664
Q ss_pred ------CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc
Q 041325 147 ------HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS 220 (450)
Q Consensus 147 ------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 220 (450)
+.|.+||+++++.. .+.. ...|...+..++|+|
T Consensus 85 ~~~~~~~~i~~~d~~~~~~~--------------~l~~---------------------------~~~~~~~~~~~~~SP 123 (723)
T 1xfd_A 85 YQHSYTGYYVLSKIPHGDPQ--------------SLDP---------------------------PEVSNAKLQYAGWGP 123 (723)
T ss_dssp SSSCCCSEEEEEESSSCCCE--------------ECCC---------------------------TTCCSCCCSBCCBCS
T ss_pred eeecceeeEEEEECCCCceE--------------eccC---------------------------CccccccccccEECC
Confidence 78889999887321 0000 013445688899999
Q ss_pred CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccc------------------eEEEEEeecCCcEEEEEcCCC------
Q 041325 221 DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDA------------------INAIVVSKSNDGFVYTGSADT------ 276 (450)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~------------------v~~~~~~~~~~~~l~~~~~dg------ 276 (450)
||+.|+.++. +.|++||+.+++...... .+... +.+++|+|++. .|+.++.++
T Consensus 124 dG~~la~~~~-~~i~~~~~~~g~~~~~~~-~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~-~la~~~~~~~~~~~~ 200 (723)
T 1xfd_A 124 KGQQLIFIFE-NNIYYCAHVGKQAIRVVS-TGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGT-RLAYAAINDSRVPIM 200 (723)
T ss_dssp STTCEEEEET-TEEEEESSSSSCCEEEEC-CCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSS-EEEEEEEECTTSCEE
T ss_pred CCCEEEEEEC-CeEEEEECCCCceEEEec-CCCCCceECcccceeEEEEeccCcceEEECCCCC-EEEEEEECCCccceE
Confidence 9999999885 799999999887665554 32322 37899999665 566655432
Q ss_pred ----------------------------cEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC----
Q 041325 277 ----------------------------KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC---- 324 (450)
Q Consensus 277 ----------------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~---- 324 (450)
.|++||+.+++... ..........+...+..++|+|||++|++...
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~--~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~ 278 (723)
T 1xfd_A 201 ELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDL--EMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQN 278 (723)
T ss_dssp EECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCE--ECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSC
T ss_pred EeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeE--EeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCC
Confidence 78999987665100 00000112224667899999999998877653
Q ss_pred CCcEEEEEcCCCceeeeCCCCCCceeeecccc-CCccce----EEEEEeC--CeEEE--EeCCC------eEEEeeC-CC
Q 041325 325 DRSILVWERDQGNYIVDGDDDSGHMVLKGALR-GHTKAI----LCLAVVS--NLLFS--GSSDN------TIRIWRR-SS 388 (450)
Q Consensus 325 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v----~~~~~~~--~~l~s--~~~dg------~v~iwd~-~~ 388 (450)
+..|++||+.+++... ... .+...+ ..++|++ +.|+. +..++ .|.+||. ..
T Consensus 279 ~~~i~~~d~~~g~~~~-------------~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~ 345 (723)
T 1xfd_A 279 VSILTLCDATTGVCTK-------------KHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPN 345 (723)
T ss_dssp EEEEEEEETTTCCEEE-------------EEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCC
T ss_pred eEEEEEEeCCCCcceE-------------EEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCC
Confidence 3579999999876441 111 122222 2567774 44443 55677 5667773 33
Q ss_pred CccccCCCceeEEEecCCCcceEE-EEEEecCCCCCCCCCCCCceEEEEEccc-C--CcEEEEEe
Q 041325 389 SVTDHQKGYSCLAVLEGHRRPVKC-LTAVVDSDYSNRNSDHSSTSFLVYSGSL-D--CEIKIWQI 449 (450)
Q Consensus 389 ~~~~~~~~~~~~~~~~~h~~~v~~-l~~~~~~~~~~~~~~~~~~~~~l~s~~~-D--g~i~iw~l 449 (450)
+. ..+...+..+...+.. ++|+|+++ .|+..+. + +.++||++
T Consensus 346 ~~------~~~~~~l~~~~~~~~~~~~~spdg~-------------~l~~~~~~~~~~~~~l~~~ 391 (723)
T 1xfd_A 346 SS------NDNIQSITSGDWDVTKILAYDEKGN-------------KIYFLSTEDLPRRRQLYSA 391 (723)
T ss_dssp SS------SCCCCBSCCSSSCEEEEEEEETTTT-------------EEEEEESSSCTTCCEEEEE
T ss_pred CC------ccceeEeecCCeEEEeeeEEcCCCC-------------EEEEEEcCCCCcceEEEEE
Confidence 21 0012233333334444 69999999 6765544 4 88999987
No 144
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.88 E-value=9.1e-21 Score=186.61 Aligned_cols=286 Identities=10% Similarity=0.072 Sum_probs=189.6
Q ss_pred cceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEE
Q 041325 76 SYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRV 151 (450)
Q Consensus 76 ~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~i 151 (450)
..|.+++| | +.++.+. ++.|++||+.+++.... ..+...+.+++|+|++ |+. ..|+.|++
T Consensus 82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l-------------~~~~~~~~~~~~SpdG~~la~-~~~~~i~v 145 (706)
T 2z3z_A 82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYL-------------FDTNEETASLDFSPVGDRVAY-VRNHNLYI 145 (706)
T ss_dssp CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEE-------------ECCTTCCTTCEECTTSSEEEE-EETTEEEE
T ss_pred cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEc-------------cCCcccccCCcCCCCCCEEEE-EECCeEEE
Confidence 56999999 6 6666554 59999999988764432 3556678899999887 555 57899999
Q ss_pred EEcCC-----CceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEE
Q 041325 152 WKIDN-----NTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLY 226 (450)
Q Consensus 152 w~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 226 (450)
||+.+ ++......... ... ..... ....+...+.+++|+|||++|+
T Consensus 146 ~~~~~~~~~~g~~~~~~~~~~----------------~~~-----------~~g~~--~~~ee~~~~~~~~~SpDg~~la 196 (706)
T 2z3z_A 146 ARGGKLGEGMSRAIAVTIDGT----------------ETL-----------VYGQA--VHQREFGIEKGTFWSPKGSCLA 196 (706)
T ss_dssp EECBCTTSCCCCCEESCSCCB----------------TTE-----------EESSC--CGGGCTTCCCSEEECTTSSEEE
T ss_pred EecCcccccCCCcEEeccCCC----------------CCe-----------Ecccc--hhhhhcCCCceEEECCCCCEEE
Confidence 99987 53211110000 000 00000 1112334578899999999999
Q ss_pred EEe---------------------------------CCCcEEEEecCCCeEEEEeec-ccccceEEEEEeecCCcEEEEE
Q 041325 227 STS---------------------------------WDRTFKIWRTSDFRCLESVKN-AHDDAINAIVVSKSNDGFVYTG 272 (450)
Q Consensus 227 ~~~---------------------------------~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~ 272 (450)
+++ .+..|.+||+.+++....... .+...+.+++|+|++. .|+++
T Consensus 197 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~-~l~~~ 275 (706)
T 2z3z_A 197 FYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDEN-ILYVA 275 (706)
T ss_dssp EEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSS-EEEEE
T ss_pred EEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCC-EEEEE
Confidence 987 457899999999886554431 4567899999999555 66666
Q ss_pred cCCC-----cEEEEeCcch-hhhccccchhhhhHhhcc---cceEEEEEcC--CCCEEEEeeCCCcEEEEEcC-CCceee
Q 041325 273 SADT-----KIKVWKKLRA-ALQVNKKHSLVQTLEKHK---SAVTALALST--DGTVLYSGACDRSILVWERD-QGNYIV 340 (450)
Q Consensus 273 ~~dg-----~i~vwd~~~~-~~~~~~~~~~~~~~~~~~---~~i~~l~~~~--~~~~l~~g~~dg~i~vwd~~-~~~~~~ 340 (450)
+.++ .|++||+.++ ... .+.. ..+. ..+..++|+| ||++++++..||.+++|++. +++.+
T Consensus 276 ~~~~~~~~~~v~~~d~~~g~~~~------~~~~-~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~- 347 (706)
T 2z3z_A 276 EVNRAQNECKVNAYDAETGRFVR------TLFV-ETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLI- 347 (706)
T ss_dssp EECTTSCEEEEEEEETTTCCEEE------EEEE-EECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEE-
T ss_pred EeCCCCCeeEEEEEECCCCceee------EEEE-ccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEE-
Confidence 5554 8999999776 210 0100 1111 1246789999 99999999999999999876 44322
Q ss_pred eCCCCCCceeeeccccCCccceEE-EEEeCC--eE-EEEeCCC----eEEEeeCCCCccccCCCceeEEEecCCCcceEE
Q 041325 341 DGDDDSGHMVLKGALRGHTKAILC-LAVVSN--LL-FSGSSDN----TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKC 412 (450)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~--~l-~s~~~dg----~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~ 412 (450)
..+..+...+.. ++|+++ .| ++++.++ .|..||+.++ . ...+. |...+.+
T Consensus 348 ------------~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~--------~-~~~l~-~~~~~~~ 405 (706)
T 2z3z_A 348 ------------RQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG--------K-TKDLT-PESGMHR 405 (706)
T ss_dssp ------------EECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC--------C-CEESC-CSSSEEE
T ss_pred ------------EecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC--------C-ceecc-CCCceEE
Confidence 344556667766 688744 55 4555554 5666776653 1 22333 6677999
Q ss_pred EEEEecCCCCCCCCCCCCceEEEEEcccC----CcEEEEEeC
Q 041325 413 LTAVVDSDYSNRNSDHSSTSFLVYSGSLD----CEIKIWQIR 450 (450)
Q Consensus 413 l~~~~~~~~~~~~~~~~~~~~~l~s~~~D----g~i~iw~l~ 450 (450)
++|+|+++ +++..+.+ +.|++||++
T Consensus 406 ~~~spdg~-------------~l~~~~~~~~~p~~i~l~d~~ 434 (706)
T 2z3z_A 406 TQLSPDGS-------------AIIDIFQSPTVPRKVTVTNIG 434 (706)
T ss_dssp EEECTTSS-------------EEEEEEECSSCSCEEEEEESS
T ss_pred EEECCCCC-------------EEEEEecCCCCCcEEEEEECC
Confidence 99999998 66655433 569999863
No 145
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.88 E-value=7.9e-21 Score=182.62 Aligned_cols=263 Identities=11% Similarity=0.078 Sum_probs=182.9
Q ss_pred CcceEEEEE--eCCEEEEeeC-CCcEEEecCCCCCceeeeecCCCCcceeEEecCC-CceEEEEEeCCe-EEEEeC---C
Q 041325 75 SSYIPSLAI--AGKLLYGGSS-NGEIRAWNRDPNNYVNITSTDVGDHANVVATGNG-DAVKSLVVLGDK-LFSAHQ---D 146 (450)
Q Consensus 75 ~~~v~~~~~--d~~~l~tgs~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~-l~s~~~---d 146 (450)
..+|.+++| ||++||+++. ||+++||++++++.... ..|. ..+..++|+|+. +++++. +
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~l-------------t~~~~~~~~~~~~spd~~l~~~~~~~g~ 87 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKL-------------NREPINSVLDPHYGVGRVILVRDVSKGA 87 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEEC-------------CSSCCSEECEECTTCSEEEEEEECSTTS
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEee-------------ecccccccccccCCCCeEEEEeccCCCC
Confidence 567999988 8999999887 99999999866654332 3444 689999999988 555554 4
Q ss_pred CeEEEEEcCC--CceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCE
Q 041325 147 HKIRVWKIDN--NTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSL 224 (450)
Q Consensus 147 g~i~iw~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 224 (450)
...++|.++. ... .. .+ .....+...+|+|+++.
T Consensus 88 ~~~~l~~~~~~~~g~--------------~~--~l----------------------------~~~~~~~~~~~s~dg~~ 123 (582)
T 3o4h_A 88 EQHALFKVNTSRPGE--------------EQ--RL----------------------------EAVKPMRILSGVDTGEA 123 (582)
T ss_dssp CCEEEEEEETTSTTC--------------CE--EC----------------------------TTSCSBEEEEEEECSSC
T ss_pred cceEEEEEeccCCCc--------------cc--cc----------------------------cCCCCceeeeeCCCCCe
Confidence 5567766654 210 00 00 01112345678887753
Q ss_pred -EEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC----CcEEEEeCcchhhhccccchhhhh
Q 041325 225 -LYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD----TKIKVWKKLRAALQVNKKHSLVQT 299 (450)
Q Consensus 225 -l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~vwd~~~~~~~~~~~~~~~~~ 299 (450)
+++.+.++.+.+||+.+++...... +.. .+++|+|++. .++.++.+ +.|++||+.+++ ...
T Consensus 124 ~~~~s~~~~~~~l~d~~~g~~~~l~~--~~~--~~~~~spDG~-~la~~~~~~~~~~~i~~~d~~~g~---------~~~ 189 (582)
T 3o4h_A 124 VVFTGATEDRVALYALDGGGLRELAR--LPG--FGFVSDIRGD-LIAGLGFFGGGRVSLFTSNLSSGG---------LRV 189 (582)
T ss_dssp EEEEEECSSCEEEEEEETTEEEEEEE--ESS--CEEEEEEETT-EEEEEEEEETTEEEEEEEETTTCC---------CEE
T ss_pred EEEEecCCCCceEEEccCCcEEEeec--CCC--ceEEECCCCC-EEEEEEEcCCCCeEEEEEcCCCCC---------ceE
Confidence 3344445556699999887655544 222 8899999665 77766665 789999987765 224
Q ss_pred HhhcccceEEEEEcCCCCEEEEeeCCC--cEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEE--------EeC
Q 041325 300 LEKHKSAVTALALSTDGTVLYSGACDR--SILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLA--------VVS 369 (450)
Q Consensus 300 ~~~~~~~i~~l~~~~~~~~l~~g~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--------~~~ 369 (450)
+..+...+..++|+|||++|+++..++ .|++||+.+++.. .+..|...+..++ |++
T Consensus 190 l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~sp 255 (582)
T 3o4h_A 190 FDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE--------------DLELPSKDFSSYRPTAITWLGYLP 255 (582)
T ss_dssp ECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE--------------ECCCSCSHHHHHCCSEEEEEEECT
T ss_pred eecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE--------------EccCCCcChhhhhhccccceeEcC
Confidence 456778889999999999999888888 8999999887633 3344544454444 775
Q ss_pred C--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCc---E
Q 041325 370 N--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCE---I 444 (450)
Q Consensus 370 ~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~---i 444 (450)
+ ++++++.||.+++|++ + +... .+.+.|.+++|+ ++. ++++++.+.. |
T Consensus 256 dg~~~~~~~~~g~~~l~~~--g--------~~~~---~~~~~v~~~~~s-dg~-------------~l~~~s~~~~p~~l 308 (582)
T 3o4h_A 256 DGRLAVVARREGRSAVFID--G--------ERVE---APQGNHGRVVLW-RGK-------------LVTSHTSLSTPPRI 308 (582)
T ss_dssp TSCEEEEEEETTEEEEEET--T--------EEEC---CCSSEEEEEEEE-TTE-------------EEEEEEETTEEEEE
T ss_pred CCcEEEEEEcCCcEEEEEE--C--------Ceec---cCCCceEEEEec-CCE-------------EEEEEcCCCCCCeE
Confidence 4 8889999999999998 3 2222 234678899999 887 8888887754 5
Q ss_pred EEEEe
Q 041325 445 KIWQI 449 (450)
Q Consensus 445 ~iw~l 449 (450)
.+|++
T Consensus 309 ~~~d~ 313 (582)
T 3o4h_A 309 VSLPS 313 (582)
T ss_dssp EEETT
T ss_pred EEEcC
Confidence 55553
No 146
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.87 E-value=5e-21 Score=188.48 Aligned_cols=269 Identities=11% Similarity=0.104 Sum_probs=172.9
Q ss_pred EEEeCCEEEEeeCCCcEEEecCCCCCc--eeeeecCCC-----CcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEE
Q 041325 81 LAIAGKLLYGGSSNGEIRAWNRDPNNY--VNITSTDVG-----DHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWK 153 (450)
Q Consensus 81 ~~~d~~~l~tgs~dg~v~vw~~~~~~~--~~~~~~~~~-----~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~ 153 (450)
+.|.|+.+++++.|| | +||+.+++. ......... ..... ...+...|.+++|+++..+..+.|+.|++||
T Consensus 31 ~~w~g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~-~~~~~~~v~~~~~spd~~~~~~~~~~i~~~d 107 (706)
T 2z3z_A 31 LQWMGDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKF-QTTDAFPSFRTLDAGRGLVVLFTQGGLVGFD 107 (706)
T ss_dssp CEEETTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC------------CCCEEEEETTTTEEEEEETTEEEEEE
T ss_pred CcCcCCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhcc-ccccccCceeEEECCCCeEEEEECCEEEEEE
Confidence 444477788888888 8 999998876 332111000 00000 0112257999999998744444579999999
Q ss_pred cCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCc
Q 041325 154 IDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRT 233 (450)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 233 (450)
+.+++.. .+..+...+.+++|+|+|++|+.+ .++.
T Consensus 108 ~~~~~~~--------------------------------------------~l~~~~~~~~~~~~SpdG~~la~~-~~~~ 142 (706)
T 2z3z_A 108 MLARKVT--------------------------------------------YLFDTNEETASLDFSPVGDRVAYV-RNHN 142 (706)
T ss_dssp TTTTEEE--------------------------------------------EEECCTTCCTTCEECTTSSEEEEE-ETTE
T ss_pred CCCCceE--------------------------------------------EccCCcccccCCcCCCCCCEEEEE-ECCe
Confidence 9887321 111345567889999999999985 5899
Q ss_pred EEEEecCC-----CeEEEEeecccccc--------------eEEEEEeecCCcEEEEEc---------------------
Q 041325 234 FKIWRTSD-----FRCLESVKNAHDDA--------------INAIVVSKSNDGFVYTGS--------------------- 273 (450)
Q Consensus 234 i~iwd~~~-----~~~~~~~~~~~~~~--------------v~~~~~~~~~~~~l~~~~--------------------- 273 (450)
|++||+.+ ++...... .+... +.++.|+|++. .|++++
T Consensus 143 i~v~~~~~~~~~~g~~~~~~~-~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~-~la~~~~d~~~~~~~~~~~~~~~~~~~ 220 (706)
T 2z3z_A 143 LYIARGGKLGEGMSRAIAVTI-DGTETLVYGQAVHQREFGIEKGTFWSPKGS-CLAFYRMDQSMVKPTPIVDYHPLEAES 220 (706)
T ss_dssp EEEEECBCTTSCCCCCEESCS-CCBTTEEESSCCGGGCTTCCCSEEECTTSS-EEEEEEEECTTSCCEEEEECCSSSCEE
T ss_pred EEEEecCcccccCCCcEEecc-CCCCCeEcccchhhhhcCCCceEEECCCCC-EEEEEEECCCCCceEEeeccCCCCCce
Confidence 99999998 76655443 22222 58899999655 666665
Q ss_pred ------------CCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCC-----cEEEEEcCCC
Q 041325 274 ------------ADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDR-----SILVWERDQG 336 (450)
Q Consensus 274 ------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg-----~i~vwd~~~~ 336 (450)
.+..|++||+.+++.. .+.....+...+..++|+|||++|++++.++ .|++||+.++
T Consensus 221 ~~~~y~~~g~~~~~~~l~~~d~~~~~~~------~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g 294 (706)
T 2z3z_A 221 KPLYYPMAGTPSHHVTVGIYHLATGKTV------YLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETG 294 (706)
T ss_dssp EEECCCBTTSCCCEEEEEEEETTTTEEE------ECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTC
T ss_pred EEeeCCCCCCCCCeeEEEEEECCCCceE------eeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCC
Confidence 4578999999776511 1111124567799999999999999988775 8999999987
Q ss_pred ceeeeCCCCCCceeeeccccCCccceEEEEEeC--C--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEE
Q 041325 337 NYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--N--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKC 412 (450)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~ 412 (450)
+.... ............+.++.|++ + ++++++.||.+++|++... ...+..+..|...+..
T Consensus 295 ~~~~~--------~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~-------~~~~~~l~~~~~~v~~ 359 (706)
T 2z3z_A 295 RFVRT--------LFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTT-------GRLIRQVTKGEWEVTN 359 (706)
T ss_dssp CEEEE--------EEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETT-------SCEEEECCCSSSCEEE
T ss_pred ceeeE--------EEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECC-------CCEEEecCCCCeEEEe
Confidence 32210 00000011111235567765 4 8889999999999987621 2456667778888877
Q ss_pred -EEEEecCC
Q 041325 413 -LTAVVDSD 420 (450)
Q Consensus 413 -l~~~~~~~ 420 (450)
++|+|+++
T Consensus 360 ~~~~spdg~ 368 (706)
T 2z3z_A 360 FAGFDPKGT 368 (706)
T ss_dssp EEEECTTSS
T ss_pred eeEEcCCCC
Confidence 79999998
No 147
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.87 E-value=6.5e-21 Score=175.19 Aligned_cols=203 Identities=13% Similarity=0.093 Sum_probs=147.0
Q ss_pred CceEEEEEccCCCEEEEEeCCCcEEEEecCCCe----------EEEE----eecccccceEEEEEeecCCcEEE----EE
Q 041325 211 DTVSALALSSDGSLLYSTSWDRTFKIWRTSDFR----------CLES----VKNAHDDAINAIVVSKSNDGFVY----TG 272 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----------~~~~----~~~~~~~~v~~~~~~~~~~~~l~----~~ 272 (450)
..++.+++++++.++++++.++ +++|+..... .+.. ....+...|.+++|+|++. +|+ ++
T Consensus 37 ~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~-~lav~~~sg 114 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNL-TLSACMMSS 114 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSC-EEEEEEEET
T ss_pred CCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCC-EEEEEEecc
Confidence 4678899999999999999888 8888753210 1111 0113556799999999655 666 78
Q ss_pred cCCCcEEEEeCcchhhhcc---ccchhhhhHhhcccceEEEEEcCC-CCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCc
Q 041325 273 SADTKIKVWKKLRAALQVN---KKHSLVQTLEKHKSAVTALALSTD-GTVLYSGACDRSILVWERDQGNYIVDGDDDSGH 348 (450)
Q Consensus 273 ~~dg~i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~ 348 (450)
+.|+.|++||+++...... ........+.+|...|.+++|+|+ +++|++++.||.|++||++++...
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~--------- 185 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV--------- 185 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE---------
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce---------
Confidence 8999999999876520000 011123445678999999999997 889999999999999999987533
Q ss_pred eeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecC-------CCcceEEEEEEecC
Q 041325 349 MVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG-------HRRPVKCLTAVVDS 419 (450)
Q Consensus 349 ~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-------h~~~v~~l~~~~~~ 419 (450)
....+|...|.+++|+ +++|++|+.||.|++||.+. .....+.. |...|.+++|+++.
T Consensus 186 ----~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~~---------~~~~~~~~~~~~~~~~~~~v~~v~w~~~~ 252 (434)
T 2oit_A 186 ----CATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPTL---------QEKKVIPCPPFYESDHPVRVLDVLWIGTY 252 (434)
T ss_dssp ----EEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTTC---------CEEEEECCCTTCCTTSCEEEEEEEEEETT
T ss_pred ----eeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccCC---------cccccccCCcccCCCCceeEEEEEEecCc
Confidence 2345688899999998 45999999999999999882 22233322 34589999999988
Q ss_pred CCCCCCCCCCCceEEEEE-cccCCc------EEEEEeC
Q 041325 420 DYSNRNSDHSSTSFLVYS-GSLDCE------IKIWQIR 450 (450)
Q Consensus 420 ~~~~~~~~~~~~~~~l~s-~~~Dg~------i~iw~l~ 450 (450)
. ++++ ++.||. +++|+++
T Consensus 253 ~-------------~l~~~~~~dg~~~~~~~v~i~~l~ 277 (434)
T 2oit_A 253 V-------------FAIVYAAADGTLETSPDVVMALLP 277 (434)
T ss_dssp E-------------EEEEEEETTCCSSSCCEEEEEECC
T ss_pred e-------------EEEEEccCCCccCCCCceEEEEec
Confidence 7 5533 444543 8899874
No 148
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=1.2e-19 Score=161.46 Aligned_cols=260 Identities=11% Similarity=0.097 Sum_probs=170.3
Q ss_pred CCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeC-CCcEEEecCCCCCc-eeeeecCCCCcceeEEecCCCceE
Q 041325 56 QAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSS-NGEIRAWNRDPNNY-VNITSTDVGDHANVVATGNGDAVK 131 (450)
Q Consensus 56 ~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~-dg~v~vw~~~~~~~-~~~~~~~~~~~~~~~~~~h~~~v~ 131 (450)
..+...+++.+..+. .+...+ +++| |++++++++. ++.|++||+.+++. ... +..+..+..
T Consensus 23 ~~~d~~~~~~~~~~~--~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~------------~~~~~~~~~ 87 (331)
T 3u4y_A 23 SFFSTDTLEILNQIT--LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVA------------IQEGQSSMA 87 (331)
T ss_dssp EEEETTTCCEEEEEE--CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEE------------EEECSSCCC
T ss_pred EEEeCcccceeeeEE--ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEe------------cccCCCCcc
Confidence 344455667777777 556666 8888 7886666655 89999999998875 333 445555555
Q ss_pred EEEEeCCe--EEEEeCCC---eEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeee
Q 041325 132 SLVVLGDK--LFSAHQDH---KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTW 206 (450)
Q Consensus 132 ~l~~~~~~--l~s~~~dg---~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (450)
+++|++++ ++++..++ .|.+||+.+++. +..++
T Consensus 88 ~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~----------------~~~~~-------------------------- 125 (331)
T 3u4y_A 88 DVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF----------------ISTIP-------------------------- 125 (331)
T ss_dssp CEEECTTSSEEEECCCSSSSCEEEEEETTTTEE----------------EEEEE--------------------------
T ss_pred ceEECCCCCEEEEecCCCCcccEEEEECCCCCe----------------EEEEE--------------------------
Confidence 59999876 66544442 899999988732 21111
Q ss_pred ecCCCceEEEEEccCCCEEEEE-eCCCc-EEEEecCCCeEEE----EeecccccceEEEEEeecCCcEEEEEcCCCcEEE
Q 041325 207 VHHVDTVSALALSSDGSLLYST-SWDRT-FKIWRTSDFRCLE----SVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKV 280 (450)
Q Consensus 207 ~~~~~~v~~~~~~~~~~~l~~~-~~dg~-i~iwd~~~~~~~~----~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v 280 (450)
......+++|+|+|++++++ ..++. |.+|++.....+. ... .....+..++|+|++..+++++..++.|.+
T Consensus 126 --~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~spdg~~l~v~~~~~~~v~v 202 (331)
T 3u4y_A 126 --IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFI-SGGTRPFNITFTPDGNFAFVANLIGNSIGI 202 (331)
T ss_dssp --CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEE-CSSSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred --CCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccc-cCCCCccceEECCCCCEEEEEeCCCCeEEE
Confidence 23356899999999855554 55688 9999987543221 111 334567999999866656677778999999
Q ss_pred EeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEee-CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCc
Q 041325 281 WKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA-CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT 359 (450)
Q Consensus 281 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (450)
||+.+++. ...+..+. ....+..++|+|+|++|+++. .++.|.+||+.+++..... .....+..+.
T Consensus 203 ~d~~~~~~-----~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~-------~~~~~~~~~~ 269 (331)
T 3u4y_A 203 LETQNPEN-----ITLLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVK-------SFGHGLLIDP 269 (331)
T ss_dssp EECSSTTS-----CEEEEEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEE-------EEECCCCCCC
T ss_pred EECCCCcc-----cceeeecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeec-------ccccccccCC
Confidence 99977651 00033333 336678899999999776654 5788999999987752100 0001111111
Q ss_pred c---ceEEEEEeC--CeEE-EEeCCCeEEEeeCCC
Q 041325 360 K---AILCLAVVS--NLLF-SGSSDNTIRIWRRSS 388 (450)
Q Consensus 360 ~---~v~~~~~~~--~~l~-s~~~dg~v~iwd~~~ 388 (450)
. ....++|++ ++|+ ++..++.|.+||+..
T Consensus 270 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~ 304 (331)
T 3u4y_A 270 RPLFGANQMALNKTETKLFISANISRELKVFTISG 304 (331)
T ss_dssp GGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTS
T ss_pred CCcccccceEECCCCCEEEEecCCCCcEEEEEecC
Confidence 1 124567774 4554 555677999999986
No 149
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.86 E-value=2.7e-20 Score=162.81 Aligned_cols=242 Identities=12% Similarity=0.021 Sum_probs=167.9
Q ss_pred CCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCC-CCceeeeecCCCCcceeEEecC-CCceEEEE
Q 041325 59 AASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDP-NNYVNITSTDVGDHANVVATGN-GDAVKSLV 134 (450)
Q Consensus 59 ~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~-~~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~ 134 (450)
....++.. .+. .|...|.+++| |+++|++++ ++.|++||+.+ ++.... ..+| ...+.+++
T Consensus 28 d~~~~~~~-~~~--~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~------------~~~~~~~~~~~~~ 91 (297)
T 2ojh_A 28 NIRTRKMR-VVW--QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKV------------DTGFATICNNDHG 91 (297)
T ss_dssp ETTTTEEE-EEE--EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEEC------------CCTTCCCBCSCCE
T ss_pred eCCCCcee-eec--cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEe------------ccccccccccceE
Confidence 33444444 344 68899999999 799999987 78999999998 765544 2233 46789999
Q ss_pred EeCCe--EEEEe--CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCC
Q 041325 135 VLGDK--LFSAH--QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHV 210 (450)
Q Consensus 135 ~~~~~--l~s~~--~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (450)
|+++. |++++ .++...+|.++.... . ... + .+.
T Consensus 92 ~spdg~~l~~~~~~~~~~~~l~~~~~~~~--------------~-~~~---------------------------~-~~~ 128 (297)
T 2ojh_A 92 ISPDGALYAISDKVEFGKSAIYLLPSTGG--------------T-PRL---------------------------M-TKN 128 (297)
T ss_dssp ECTTSSEEEEEECTTTSSCEEEEEETTCC--------------C-CEE---------------------------C-CSS
T ss_pred ECCCCCEEEEEEeCCCCcceEEEEECCCC--------------c-eEE---------------------------e-ecC
Confidence 99887 77777 345666666543210 0 000 0 122
Q ss_pred CceEEEEEccCCCEEE-EEeCCCcEEEEecC--CCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchh
Q 041325 211 DTVSALALSSDGSLLY-STSWDRTFKIWRTS--DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAA 287 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 287 (450)
..+..++|+|++++|+ ++..++.+++|++. +++. ..+. .+...+.++.|+|++..+++++..++.+++|++....
T Consensus 129 ~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~ 206 (297)
T 2ojh_A 129 LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-TRLT-HGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG 206 (297)
T ss_dssp SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-EECC-CSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS
T ss_pred CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-eEcc-cCCCccccceECCCCCEEEEEecCCCCccEEEECCCC
Confidence 2488899999999877 77789999999853 3433 3444 5678899999998665445555568999999985321
Q ss_pred hhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC-----------CcEEEEEcCCCceeeeCCCCCCceeeecccc
Q 041325 288 LQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD-----------RSILVWERDQGNYIVDGDDDSGHMVLKGALR 356 (450)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d-----------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 356 (450)
.....+..+...+..++|+|++++|++++.+ +.|++||+.+++.. ......
T Consensus 207 -------~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~-----------~~~~~~ 268 (297)
T 2ojh_A 207 -------SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVE-----------TLFDLF 268 (297)
T ss_dssp -------SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCE-----------EEEEEE
T ss_pred -------CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCce-----------eeeccC
Confidence 1233445566788999999999999988876 56999999876532 223344
Q ss_pred CCccceEEEEEeC--CeEEEEeCCC
Q 041325 357 GHTKAILCLAVVS--NLLFSGSSDN 379 (450)
Q Consensus 357 ~~~~~v~~~~~~~--~~l~s~~~dg 379 (450)
+|...+.+++|++ ++|++++.+.
T Consensus 269 ~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 269 GGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp ESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CCCcccccceECCCCCEEEEEEecc
Confidence 6777888888984 4777666553
No 150
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.86 E-value=8.6e-20 Score=180.22 Aligned_cols=291 Identities=10% Similarity=-0.008 Sum_probs=182.1
Q ss_pred CCCCccceeeeEEeecCCCc---ceEEEEE--eCCEEEEeeCC---------CcEEEecCCCCCceeeeecCCCCcceeE
Q 041325 57 APAASEHQCSATLKVKGNSS---YIPSLAI--AGKLLYGGSSN---------GEIRAWNRDPNNYVNITSTDVGDHANVV 122 (450)
Q Consensus 57 ~~~~~~~~~~~~l~~~~h~~---~v~~~~~--d~~~l~tgs~d---------g~v~vw~~~~~~~~~~~~~~~~~~~~~~ 122 (450)
.....++++...+. +|.. .|.+++| ||++|++++.+ +.|++||+.+++......
T Consensus 41 ~~d~~~g~~~~~~~--~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~---------- 108 (723)
T 1xfd_A 41 LWNVETNTSTVLIE--GKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDP---------- 108 (723)
T ss_dssp EBCGGGCCCEEEEC--TTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCC----------
T ss_pred EEECCCCcEEEEec--cccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccC----------
Confidence 34445566666666 6665 4999999 89999999875 788899999887532211
Q ss_pred EecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEee
Q 041325 123 ATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRR 200 (450)
Q Consensus 123 ~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (450)
..+|...+..++|+||+ |+.++. +.|++||+.+++.......... .
T Consensus 109 ~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~---------------~---------------- 156 (723)
T 1xfd_A 109 PEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKE---------------G---------------- 156 (723)
T ss_dssp TTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBT---------------T----------------
T ss_pred CccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCC---------------C----------------
Confidence 12455568899999888 666665 8999999988743221111000 0
Q ss_pred cceeeeecC---------CCceEEEEEccCCCEEEEEeCCC----------------------------------cEEEE
Q 041325 201 HKKCTWVHH---------VDTVSALALSSDGSLLYSTSWDR----------------------------------TFKIW 237 (450)
Q Consensus 201 ~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~dg----------------------------------~i~iw 237 (450)
..+.++ .+.+.+++|+|||+.|+.++.|+ .|++|
T Consensus 157 ---~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~ 233 (723)
T 1xfd_A 157 ---VIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVI 233 (723)
T ss_dssp ---TEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEE
T ss_pred ---ceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEE
Confidence 000011 12347889999999888877543 79999
Q ss_pred ecCCCeEEEEeecc-----cccceEEEEEeecCCcEEEEEc----CCCcEEEEeCcchhhhccccchhhhhHhh-cccce
Q 041325 238 RTSDFRCLESVKNA-----HDDAINAIVVSKSNDGFVYTGS----ADTKIKVWKKLRAALQVNKKHSLVQTLEK-HKSAV 307 (450)
Q Consensus 238 d~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~i 307 (450)
|+.+++....+... +...+..++|+|++. ++++.. .+..|++||+.+++ ....+.. +...+
T Consensus 234 d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~-~l~~~~~~~~~~~~i~~~d~~~g~--------~~~~~~~~~~~~~ 304 (723)
T 1xfd_A 234 GLNGPTHDLEMMPPDDPRMREYYITMVKWATSTK-VAVTWLNRAQNVSILTLCDATTGV--------CTKKHEDESEAWL 304 (723)
T ss_dssp ESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSE-EEEEEEETTSCEEEEEEEETTTCC--------EEEEEEEECSSCC
T ss_pred ECCCCceeEEeeCCccCCCccceeEEEEEeCCCe-EEEEEEcCCCCeEEEEEEeCCCCc--------ceEEEEeccCCEE
Confidence 99988765555421 256789999999554 555543 33679999987765 2222211 22333
Q ss_pred ----EEEEEcCCCCEEEE--eeCCC------cEEEEEc-CCCceeeeCCCCCCceeeeccccCCccceEE-EEEeC--Ce
Q 041325 308 ----TALALSTDGTVLYS--GACDR------SILVWER-DQGNYIVDGDDDSGHMVLKGALRGHTKAILC-LAVVS--NL 371 (450)
Q Consensus 308 ----~~l~~~~~~~~l~~--g~~dg------~i~vwd~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~--~~ 371 (450)
..++|+|||+.|+. +..++ .|.+||+ ..++.. ....+..+...+.. ++|++ +.
T Consensus 305 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-----------~~~~l~~~~~~~~~~~~~spdg~~ 373 (723)
T 1xfd_A 305 HRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSND-----------NIQSITSGDWDVTKILAYDEKGNK 373 (723)
T ss_dssp CCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSC-----------CCCBSCCSSSCEEEEEEEETTTTE
T ss_pred eccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCcc-----------ceeEeecCCeEEEeeeEEcCCCCE
Confidence 37899999997775 44566 5777773 333200 01223323333443 57874 46
Q ss_pred EEEEeCC---CeEEEeeCCCCccccCCCceeEEEecC---CCcceEEEEEEecCC
Q 041325 372 LFSGSSD---NTIRIWRRSSSVTDHQKGYSCLAVLEG---HRRPVKCLTAVVDSD 420 (450)
Q Consensus 372 l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~~~~~~ 420 (450)
|+..+.+ +.+++|++.... ......+.. |...+..++|+|+++
T Consensus 374 l~~~~~~~~~~~~~l~~~~~~~------~~~~~~l~~~~~~~~~~~~~~~spdg~ 422 (723)
T 1xfd_A 374 IYFLSTEDLPRRRQLYSANTVG------NFNRQCLSCDLVENCTYFSASFSHSMD 422 (723)
T ss_dssp EEEEESSSCTTCCEEEEECSST------TCCCBCSSTTSSSSCCCCEEEECTTSS
T ss_pred EEEEEcCCCCcceEEEEEeCCC------CCCcceecccccCCCCeEEEEECCCCC
Confidence 6655444 789999987431 011122332 667789999999998
No 151
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.85 E-value=1.9e-19 Score=177.49 Aligned_cols=275 Identities=11% Similarity=0.065 Sum_probs=179.2
Q ss_pred EEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCC---ceEEEEEeCCe--EEEEeC-------
Q 041325 80 SLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGD---AVKSLVVLGDK--LFSAHQ------- 145 (450)
Q Consensus 80 ~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~l~~~~~~--l~s~~~------- 145 (450)
.++| ||++++++ .||.|++||+.+++.... +.+|.. .+.+++|+||+ |+.++.
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~------------~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~ 86 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTI------------LSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRY 86 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEE------------ECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSS
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEE------------EccccccccceeeEEECCCCCeEEEEecCceeEEe
Confidence 4566 67555554 699999999999886554 333332 48999999887 776665
Q ss_pred --CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCC
Q 041325 146 --DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGS 223 (450)
Q Consensus 146 --dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 223 (450)
++.|++||+++++. +... .....+..++|+|||+
T Consensus 87 s~~~~i~~~d~~~g~~----------------~~~~----------------------------~l~~~~~~~~~SPDG~ 122 (719)
T 1z68_A 87 SYTATYYIYDLSNGEF----------------VRGN----------------------------ELPRPIQYLCWSPVGS 122 (719)
T ss_dssp CEEEEEEEEETTTTEE----------------CCSS----------------------------CCCSSBCCEEECSSTT
T ss_pred ecceEEEEEECCCCcc----------------ccce----------------------------ecCcccccceECCCCC
Confidence 78999999998732 0000 0113578899999999
Q ss_pred EEEEEeCCCcEEEEecCCCeEEEEeecccccce-----------------EEEEEeecCCcEEEEEcCCC----------
Q 041325 224 LLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAI-----------------NAIVVSKSNDGFVYTGSADT---------- 276 (450)
Q Consensus 224 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v-----------------~~~~~~~~~~~~l~~~~~dg---------- 276 (450)
.|+.+. ++.|++||+.+++.......++...+ .+++|+|++. .|+.++.|.
T Consensus 123 ~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~-~la~~~~d~~~~~~~~~~~ 200 (719)
T 1z68_A 123 KLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGK-FLAYAEFNDTDIPVIAYSY 200 (719)
T ss_dssp CEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSS-EEEEEEEECTTSCEEEEEE
T ss_pred EEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCC-EEEEEEECCCCCceEEeec
Confidence 999886 78999999998876554332332222 4899999655 666665442
Q ss_pred ------------------------cEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC----CcE
Q 041325 277 ------------------------KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD----RSI 328 (450)
Q Consensus 277 ------------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d----g~i 328 (450)
.|++||+.+++............+..+...+..++|+||++++++.... ..|
T Consensus 201 ~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l 280 (719)
T 1z68_A 201 YGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVL 280 (719)
T ss_dssp CCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEE
T ss_pred cCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEE
Confidence 7889999876521000000113456688889999999998877774432 248
Q ss_pred EEEE----cCCCceeeeCCCCCCceeeeccc----cCCccceE-----EEEEeC--CeEE--EEeCCC--eEEEeeCCCC
Q 041325 329 LVWE----RDQGNYIVDGDDDSGHMVLKGAL----RGHTKAIL-----CLAVVS--NLLF--SGSSDN--TIRIWRRSSS 389 (450)
Q Consensus 329 ~vwd----~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~v~-----~~~~~~--~~l~--s~~~dg--~v~iwd~~~~ 389 (450)
.+|| ..+++.. ... ..|...+. .+.|++ +.++ +...+| .|.+||+..+
T Consensus 281 ~~~d~~~~~~~g~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~ 347 (719)
T 1z68_A 281 SICDFREDWQTWDCP-------------KTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVE 347 (719)
T ss_dssp EEEEECSSSSSEECC-------------GGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCST
T ss_pred EEEcccCCCCCCceE-------------EEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCC
Confidence 8899 7666532 222 34555554 677774 4333 454565 4666776653
Q ss_pred ccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEccc-----CCcEEEEEe
Q 041325 390 VTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSL-----DCEIKIWQI 449 (450)
Q Consensus 390 ~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~-----Dg~i~iw~l 449 (450)
+ ...+..+...+..+.++ +++ .|+..+. ++.+++|.+
T Consensus 348 --------~-~~~lt~~~~~v~~~~~~-d~~-------------~i~~~~~~~~~~~~~~~l~~~ 389 (719)
T 1z68_A 348 --------N-AIQITSGKWEAINIFRV-TQD-------------SLFYSSNEFEEYPGRRNIYRI 389 (719)
T ss_dssp --------T-CEECSCSSSCEEEEEEE-CSS-------------EEEEEESCGGGCTTCBEEEEE
T ss_pred --------c-eEecccCceEEEEEEEE-eCC-------------EEEEEEecCCCCCceEEEEEE
Confidence 1 34455566678888877 766 4444444 488999976
No 152
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.84 E-value=9.6e-19 Score=157.17 Aligned_cols=242 Identities=9% Similarity=0.077 Sum_probs=168.7
Q ss_pred CCCceEEEEEeCCe--EEEEeC-------CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceE
Q 041325 126 NGDAVKSLVVLGDK--LFSAHQ-------DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYV 196 (450)
Q Consensus 126 h~~~v~~l~~~~~~--l~s~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (450)
....+..++|+++. +++++. ++.|.+||..+++.. ..++
T Consensus 39 ~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~----------------~~~~---------------- 86 (353)
T 3vgz_A 39 VGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVT----------------QAIH---------------- 86 (353)
T ss_dssp EESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEE----------------EEEE----------------
T ss_pred hccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEE----------------EEEe----------------
Confidence 34578899999875 666553 568999999887321 1111
Q ss_pred EEeecceeeeecCCCceEEEEEccCCCEEEEE-eCCCcEEEEecCCCeEEEEeeccccc--------ceEEEEEeecCCc
Q 041325 197 QVRRHKKCTWVHHVDTVSALALSSDGSLLYST-SWDRTFKIWRTSDFRCLESVKNAHDD--------AINAIVVSKSNDG 267 (450)
Q Consensus 197 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~--------~v~~~~~~~~~~~ 267 (450)
....+..++|++++++++.+ ..++.|.+||..+++.+..+...... .+.+++++|+++.
T Consensus 87 ------------~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 154 (353)
T 3vgz_A 87 ------------NDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNT 154 (353)
T ss_dssp ------------ESSCCCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTE
T ss_pred ------------cCCCcceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCE
Confidence 12246778999999965554 55799999999999988887632221 2788999986664
Q ss_pred EEEEE-cCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCC
Q 041325 268 FVYTG-SADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDS 346 (450)
Q Consensus 268 ~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~ 346 (450)
+++++ +.++.|.+||..+++ ....+..+...+..++|+|++++|++++.++.|.+||..+++.+....
T Consensus 155 l~~~~~~~~~~i~~~d~~~~~--------~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~--- 223 (353)
T 3vgz_A 155 VYISGIGKESVIWVVDGGNIK--------LKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKK--- 223 (353)
T ss_dssp EEEEEESSSCEEEEEETTTTE--------EEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEE---
T ss_pred EEEEecCCCceEEEEcCCCCc--------eEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEE---
Confidence 44444 358899999997765 333333344557889999999999999999999999999887652111
Q ss_pred CceeeeccccCCccceEEEEEeC--CeEEEEe-CCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCC
Q 041325 347 GHMVLKGALRGHTKAILCLAVVS--NLLFSGS-SDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSN 423 (450)
Q Consensus 347 ~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~ 423 (450)
....++...+.+++|++ ++++.++ .++.|.+||..++ +.+..+.... ...++|+|+++.
T Consensus 224 ------~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~--------~~~~~~~~~~--~~~~~~s~dg~~-- 285 (353)
T 3vgz_A 224 ------LLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG--------NILAKVAAPE--SLAVLFNPARNE-- 285 (353)
T ss_dssp ------CCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC--------CEEEEEECSS--CCCEEEETTTTE--
T ss_pred ------cCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC--------cEEEEEEcCC--CceEEECCCCCE--
Confidence 11123455677888884 4555554 5599999999874 3444444332 257999999982
Q ss_pred CCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 424 RNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 424 ~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
++++...++.|.+||++
T Consensus 286 ----------l~v~~~~~~~v~~~d~~ 302 (353)
T 3vgz_A 286 ----------AYVTHRQAGKVSVIDAK 302 (353)
T ss_dssp ----------EEEEETTTTEEEEEETT
T ss_pred ----------EEEEECCCCeEEEEECC
Confidence 44555579999999963
No 153
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.84 E-value=7.8e-18 Score=151.71 Aligned_cols=278 Identities=9% Similarity=0.083 Sum_probs=174.1
Q ss_pred CCCcEEEecCC--CCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCC----CeEEEEEcCCCceeEEec
Q 041325 93 SNGEIRAWNRD--PNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQD----HKIRVWKIDNNTSAYYST 164 (450)
Q Consensus 93 ~dg~v~vw~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d----g~i~iw~~~~~~~~~~~~ 164 (450)
.++.|.+|.++ +++.... ... +...+..++|+|++ |++++.+ +.|.+|+++......
T Consensus 25 ~~~~i~~~~~d~~~g~~~~~-----------~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~--- 89 (361)
T 3scy_A 25 NSKGIYTFRFNEETGESLPL-----------SDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL--- 89 (361)
T ss_dssp SCCEEEEEEEETTTCCEEEE-----------EEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE---
T ss_pred CCCCEEEEEEeCCCCCEEEe-----------ecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE---
Confidence 46789999764 4544333 112 66788889999877 7777775 799999987631000
Q ss_pred cCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe-CCCcEEEEecCCCe
Q 041325 165 SGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS-WDRTFKIWRTSDFR 243 (450)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~ 243 (450)
..+. ....+......+++ +++++++++ .++.|.+|++....
T Consensus 90 ---------~~~~---------------------------~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g 131 (361)
T 3scy_A 90 ---------HLLN---------------------------TQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDG 131 (361)
T ss_dssp ---------EEEE---------------------------EEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTS
T ss_pred ---------EEee---------------------------EeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCC
Confidence 1111 11123345667777 788777766 68899999997543
Q ss_pred EEEEe----ec---------ccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc-chh----hhhHhhccc
Q 041325 244 CLESV----KN---------AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK-HSL----VQTLEKHKS 305 (450)
Q Consensus 244 ~~~~~----~~---------~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-~~~----~~~~~~~~~ 305 (450)
.+..+ .. .+...+.+++|+|++..++++...++.|.+|++.......... ... .........
T Consensus 132 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 211 (361)
T 3scy_A 132 ALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGS 211 (361)
T ss_dssp CBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTC
T ss_pred cCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCC
Confidence 32221 10 1123357899999666556666678999999886543100000 000 011112345
Q ss_pred ceEEEEEcCCCCEEEEee-CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeC--CCe
Q 041325 306 AVTALALSTDGTVLYSGA-CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSS--DNT 380 (450)
Q Consensus 306 ~i~~l~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~--dg~ 380 (450)
.+..++|+|||+++++++ .++.|.+|++.+++... .........+......++|+++ +|+++.. ++.
T Consensus 212 ~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~--------~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~ 283 (361)
T 3scy_A 212 GPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDE--------IQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADG 283 (361)
T ss_dssp CEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEE--------EEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCE
T ss_pred CCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEE--------eEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCE
Confidence 678999999999887777 68999999998765321 0111122333445678888754 6755554 589
Q ss_pred EEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcc-cCCcEEEEEe
Q 041325 381 IRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGS-LDCEIKIWQI 449 (450)
Q Consensus 381 v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~-~Dg~i~iw~l 449 (450)
|.+|++... ......+..+.. ...+.+++|+|+++ +|++++ .++.|.+|++
T Consensus 284 i~v~~~~~~----~g~~~~~~~~~~-g~~~~~~~~spdg~-------------~l~~~~~~~~~v~v~~~ 335 (361)
T 3scy_A 284 VAIFKVDET----NGTLTKVGYQLT-GIHPRNFIITPNGK-------------YLLVACRDTNVIQIFER 335 (361)
T ss_dssp EEEEEECTT----TCCEEEEEEEEC-SSCCCEEEECTTSC-------------EEEEEETTTTEEEEEEE
T ss_pred EEEEEEcCC----CCcEEEeeEecC-CCCCceEEECCCCC-------------EEEEEECCCCCEEEEEE
Confidence 999998621 112344555544 55788999999999 777776 7799999865
No 154
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.83 E-value=4.8e-18 Score=152.22 Aligned_cols=259 Identities=14% Similarity=0.151 Sum_probs=163.7
Q ss_pred CCCcceEEEEE--eCCEEEEeeC---CCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEe-
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSS---NGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAH- 144 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~---dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~- 144 (450)
.+...+..++| ||+ |++++. ++.|++|++.++...... .+..+...+..++|++++ |++++
T Consensus 37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~----------~~~~~~~~p~~~a~spdg~~l~~~~~ 105 (347)
T 3hfq_A 37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLN----------TVVAPGTPPAYVAVDEARQLVYSANY 105 (347)
T ss_dssp EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEE----------EEEEESCCCSEEEEETTTTEEEEEET
T ss_pred eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEee----------eeecCCCCCEEEEECCCCCEEEEEeC
Confidence 45677788888 677 555544 689999999766543321 123566788999999876 77776
Q ss_pred CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCE
Q 041325 145 QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSL 224 (450)
Q Consensus 145 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 224 (450)
.++.|.+|++...... ..+..+...... + ....+...+.+++|+|+|++
T Consensus 106 ~~~~v~v~~~~~~g~~-------------~~~~~~~~~~~~----------------p--~~~~~~~~~~~~~~spdg~l 154 (347)
T 3hfq_A 106 HKGTAEVMKIAADGAL-------------TLTDTVQHSGHG----------------P--RPEQDGSHIHYTDLTPDNRL 154 (347)
T ss_dssp TTTEEEEEEECTTSCE-------------EEEEEEECCCCC----------------S--STTCSSCCEEEEEECTTSCE
T ss_pred CCCEEEEEEeCCCCCe-------------eecceeecCCCC----------------C--CccccCCCceEEEECCCCcE
Confidence 6899999999643110 111111000000 0 00013345889999999996
Q ss_pred EEEEeCCCcEEEEecC-CCeEE--EEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHh
Q 041325 225 LYSTSWDRTFKIWRTS-DFRCL--ESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLE 301 (450)
Q Consensus 225 l~~~~~dg~i~iwd~~-~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 301 (450)
+++...++.|.+||+. +++.. ..+.......+..++|+|++..++++...++.|.+|++.... ........+.
T Consensus 155 ~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~----g~~~~~~~~~ 230 (347)
T 3hfq_A 155 AVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQT----GAFTQLGIVK 230 (347)
T ss_dssp EEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTT----TEEEEEEEEE
T ss_pred EEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCC----CceEEeeeee
Confidence 6666678899999998 45432 222222334678899999666456667888999999986421 0000111111
Q ss_pred h------cccceEEEEEcCCCCEEE-EeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeE
Q 041325 302 K------HKSAVTALALSTDGTVLY-SGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLL 372 (450)
Q Consensus 302 ~------~~~~i~~l~~~~~~~~l~-~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l 372 (450)
. ....+..++|+|||++|+ +...++.|.+|++..... ......+..+...+..++|++ ++|
T Consensus 231 ~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~----------~~~~~~~~~~~~~~~~~~~spdg~~l 300 (347)
T 3hfq_A 231 TIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH----------LTLIQQISTEGDFPRDFDLDPTEAFV 300 (347)
T ss_dssp SSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC----------EEEEEEEECSSSCCCEEEECTTSSEE
T ss_pred ecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc----------EEEeEEEecCCCCcCeEEECCCCCEE
Confidence 1 114588999999999874 555689999999873211 112234444555678888985 477
Q ss_pred EEEeC-CCeEEEeeCC
Q 041325 373 FSGSS-DNTIRIWRRS 387 (450)
Q Consensus 373 ~s~~~-dg~v~iwd~~ 387 (450)
++++. ++.|.+|++.
T Consensus 301 ~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 301 VVVNQNTDNATLYARD 316 (347)
T ss_dssp EEEETTTTEEEEEEEC
T ss_pred EEEEcCCCcEEEEEEe
Confidence 77765 5899999554
No 155
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.82 E-value=1.7e-18 Score=155.27 Aligned_cols=269 Identities=10% Similarity=0.055 Sum_probs=164.6
Q ss_pred eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--E-EEEeCCCeEEEEEcCCCcee
Q 041325 84 AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--L-FSAHQDHKIRVWKIDNNTSA 160 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l-~s~~~dg~i~iw~~~~~~~~ 160 (450)
++.++++++.++.|++||+.+++....... +....+..++|++++ + ++...++.|.+||+.+++..
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~-----------~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~ 78 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASDTVYKSCVM-----------PDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNT 78 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEEEEEEC-----------SSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEEEEEec-----------CCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEE
Confidence 577899999999999999998876554111 111257789999876 4 45567899999999887432
Q ss_pred EEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCC---------
Q 041325 161 YYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWD--------- 231 (450)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------- 231 (450)
..+..... . ..+...+..++|+|+|+++++++.+
T Consensus 79 ----------------~~~~~~~~-----------------~----~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~ 121 (349)
T 1jmx_B 79 ----------------FHANLSSV-----------------P----GEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 121 (349)
T ss_dssp ----------------EEEESCCS-----------------T----TEEEECSSCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred ----------------EEEEcccc-----------------c----ccccccccceEECCCCCEEEEEcccccccccccc
Confidence 11110000 0 0001246789999999999998865
Q ss_pred ---CcEEEEecCCCeE---EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcc-
Q 041325 232 ---RTFKIWRTSDFRC---LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHK- 304 (450)
Q Consensus 232 ---g~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~- 304 (450)
+.|.+||+.+++. +..+. +...+.+++|+|++. + ++++. .|.+||+.+++.. ..+....
T Consensus 122 ~~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~-l-~~~~~--~i~~~d~~~~~~~--------~~~~~~~~ 187 (349)
T 1jmx_B 122 VKPPRLEVFSTADGLEAKPVRTFP--MPRQVYLMRAADDGS-L-YVAGP--DIYKMDVKTGKYT--------VALPLRNW 187 (349)
T ss_dssp ECCCEEEEEEGGGGGGBCCSEEEE--CCSSCCCEEECTTSC-E-EEESS--SEEEECTTTCCEE--------EEECSTTC
T ss_pred cCCCeEEEEECCCccccceeeecc--CCCcccceeECCCCc-E-EEccC--cEEEEeCCCCcee--------cccccccc
Confidence 8999999988543 33333 344688999998655 4 44443 4999999776521 1111000
Q ss_pred -----------------------cceEEEEEcCCCCEEEEeeCCC-cEEEEEcCCCceeeeCCCCCCceeeeccccCCcc
Q 041325 305 -----------------------SAVTALALSTDGTVLYSGACDR-SILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK 360 (450)
Q Consensus 305 -----------------------~~i~~l~~~~~~~~l~~g~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (450)
.....+++++++.......... .+..+|..+++... .....+..
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~ 255 (349)
T 1jmx_B 188 NRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHT------------QEFADLTE 255 (349)
T ss_dssp CCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEE------------EEEEECSS
T ss_pred CCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEe------------cccccCCC
Confidence 0334566665542211110011 12224444333210 11112344
Q ss_pred ceEEEEEeC-C--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEE
Q 041325 361 AILCLAVVS-N--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYS 437 (450)
Q Consensus 361 ~v~~~~~~~-~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s 437 (450)
.+.++++++ + +++++ ++.|.+||+.++ +.+..+.. ...+.+++|+|+++ +|++
T Consensus 256 ~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~--------~~~~~~~~-~~~~~~~~~s~dg~-------------~l~~ 311 (349)
T 1jmx_B 256 LYFTGLRSPKDPNQIYGV--LNRLAKYDLKQR--------KLIKAANL-DHTYYCVAFDKKGD-------------KLYL 311 (349)
T ss_dssp CEEEEEECSSCTTEEEEE--ESEEEEEETTTT--------EEEEEEEC-SSCCCEEEECSSSS-------------CEEE
T ss_pred cceeeEecCCCCCEEEEE--cCeEEEEECccC--------eEEEEEcC-CCCccceEECCCCC-------------EEEE
Confidence 567777765 4 67766 889999999874 44444442 34577999999998 6777
Q ss_pred cccCCcEEEEEeC
Q 041325 438 GSLDCEIKIWQIR 450 (450)
Q Consensus 438 ~~~Dg~i~iw~l~ 450 (450)
++.++.|++||++
T Consensus 312 ~~~~~~v~v~d~~ 324 (349)
T 1jmx_B 312 GGTFNDLAVFNPD 324 (349)
T ss_dssp ESBSSEEEEEETT
T ss_pred ecCCCeEEEEecc
Confidence 8889999999974
No 156
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.82 E-value=1.8e-19 Score=173.08 Aligned_cols=228 Identities=8% Similarity=0.079 Sum_probs=165.0
Q ss_pred CCceEEEEEeCCe--EEEEeC-CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecce
Q 041325 127 GDAVKSLVVLGDK--LFSAHQ-DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKK 203 (450)
Q Consensus 127 ~~~v~~l~~~~~~--l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (450)
..+|.+++|++|+ |+.++. ||++++|+++.+...
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~------------------------------------------- 57 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV------------------------------------------- 57 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE-------------------------------------------
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE-------------------------------------------
Confidence 3579999999876 887776 999999998665210
Q ss_pred eeeecCC-CceEEEEEccCCCEEEEEeC---CCcEEEEecCC---CeEEEEeecccccceEEEEEeecCCcEEEEEcCCC
Q 041325 204 CTWVHHV-DTVSALALSSDGSLLYSTSW---DRTFKIWRTSD---FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADT 276 (450)
Q Consensus 204 ~~~~~~~-~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 276 (450)
.+..|. ..+..++|+|+ +++++++. +...++|.+.. +... .+. ....+...+|+|+++..+++...++
T Consensus 58 -~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g~~~-~l~--~~~~~~~~~~s~dg~~~~~~s~~~~ 132 (582)
T 3o4h_A 58 -KLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPGEEQ-RLE--AVKPMRILSGVDTGEAVVFTGATED 132 (582)
T ss_dssp -ECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTTCCE-ECT--TSCSBEEEEEEECSSCEEEEEECSS
T ss_pred -eeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCCccc-ccc--CCCCceeeeeCCCCCeEEEEecCCC
Confidence 111233 57889999999 77777765 45556655432 2222 333 2223446688887777666666666
Q ss_pred cEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC----CcEEEEEcCCCceeeeCCCCCCceeee
Q 041325 277 KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD----RSILVWERDQGNYIVDGDDDSGHMVLK 352 (450)
Q Consensus 277 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~ 352 (450)
.+.+||+.+++. .. +..+.. .+++|+|||++|++++.+ +.|++||+.+++..
T Consensus 133 ~~~l~d~~~g~~--------~~-l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~------------- 188 (582)
T 3o4h_A 133 RVALYALDGGGL--------RE-LARLPG--FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLR------------- 188 (582)
T ss_dssp CEEEEEEETTEE--------EE-EEEESS--CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCE-------------
T ss_pred CceEEEccCCcE--------EE-eecCCC--ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCce-------------
Confidence 677999876651 11 112222 789999999999988877 78999999877532
Q ss_pred ccccCCccceEEEEEeCC--eEEEEeCCC--eEEEeeCCCCccccCCCceeEEEecCCCcceEEEE--------EEecCC
Q 041325 353 GALRGHTKAILCLAVVSN--LLFSGSSDN--TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLT--------AVVDSD 420 (450)
Q Consensus 353 ~~~~~~~~~v~~~~~~~~--~l~s~~~dg--~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~--------~~~~~~ 420 (450)
.+..|...+..++|+++ .|+++..++ .|++||+.++ +.. .+.+|...+..++ |+||+.
T Consensus 189 -~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~--------~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~ 258 (582)
T 3o4h_A 189 -VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG--------SVE-DLELPSKDFSSYRPTAITWLGYLPDGR 258 (582)
T ss_dssp -EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC--------CEE-ECCCSCSHHHHHCCSEEEEEEECTTSC
T ss_pred -EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC--------cEE-EccCCCcChhhhhhccccceeEcCCCc
Confidence 45677788899999855 888888888 8999999874 333 6677877777777 999997
Q ss_pred CCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 421 YSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 421 ~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
++++++.||.++||++
T Consensus 259 -------------~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 259 -------------LAVVARREGRSAVFID 274 (582)
T ss_dssp -------------EEEEEEETTEEEEEET
T ss_pred -------------EEEEEEcCCcEEEEEE
Confidence 9999999999999985
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.81 E-value=6.5e-17 Score=145.71 Aligned_cols=281 Identities=14% Similarity=0.160 Sum_probs=170.1
Q ss_pred CCcceEEEEE--eCCEEEEeeCC----CcEEEecCCC--CCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEe-
Q 041325 74 NSSYIPSLAI--AGKLLYGGSSN----GEIRAWNRDP--NNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAH- 144 (450)
Q Consensus 74 h~~~v~~~~~--d~~~l~tgs~d----g~v~vw~~~~--~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~- 144 (450)
|...+..++| ||++|++++.+ |.|.+|+++. ++..... ....+......+++.++.|++++
T Consensus 48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~----------~~~~~~~~p~~~~~dg~~l~~~~~ 117 (361)
T 3scy_A 48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLN----------TQKTMGADPCYLTTNGKNIVTANY 117 (361)
T ss_dssp ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEE----------EEECSSSCEEEEEECSSEEEEEET
T ss_pred cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEee----------EeccCCCCcEEEEECCCEEEEEEC
Confidence 5677778888 79999999886 7999998865 3332221 12234556777888444466555
Q ss_pred CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCE
Q 041325 145 QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSL 224 (450)
Q Consensus 145 ~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 224 (450)
.++.|.+|++......... ......... .......+...+.+++|+|+|++
T Consensus 118 ~~~~v~~~~~~~~g~~~~~----------~~~~~~~g~-------------------~~~~~~~~~~~~~~~~~spdg~~ 168 (361)
T 3scy_A 118 SGGSITVFPIGQDGALLPA----------SDVIEFKGS-------------------GPDKERQTMPHLHCVRITPDGKY 168 (361)
T ss_dssp TTTEEEEEEBCTTSCBCSC----------SEEEECCCC-------------------CSCTTTCSSCCEEEEEECTTSSE
T ss_pred CCCEEEEEEeCCCCcCccc----------ceeEEccCC-------------------CCCccccCCCcceEEEECCCCCE
Confidence 6889999999754211000 000000000 00000013345788999999997
Q ss_pred EEEEe-CCCcEEEEecCCCeE------E------EEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc
Q 041325 225 LYSTS-WDRTFKIWRTSDFRC------L------ESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN 291 (450)
Q Consensus 225 l~~~~-~dg~i~iwd~~~~~~------~------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 291 (450)
+++++ .++.|.+|++..... + ..........+..++|+|++..++++...++.|.+||+.++....
T Consensus 169 l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~- 247 (361)
T 3scy_A 169 LLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDE- 247 (361)
T ss_dssp EEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEE-
T ss_pred EEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEE-
Confidence 76655 588999998875431 1 222224456678999998665444555579999999987553110
Q ss_pred ccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC--CcEEEEEcC--CCceeeeCCCCCCceeeeccccCCccceEEEEE
Q 041325 292 KKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD--RSILVWERD--QGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV 367 (450)
Q Consensus 292 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d--g~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 367 (450)
...+.....+......++|+|||++|+++..+ +.|.+|++. +++.. ....+.. ...+.+++|
T Consensus 248 --~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~-----------~~~~~~~-g~~~~~~~~ 313 (361)
T 3scy_A 248 --IQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLT-----------KVGYQLT-GIHPRNFII 313 (361)
T ss_dssp --EEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEE-----------EEEEEEC-SSCCCEEEE
T ss_pred --eEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEE-----------EeeEecC-CCCCceEEE
Confidence 00111222233456899999999998776654 899999996 33321 1122222 345678888
Q ss_pred eC--CeEEEEe-CCCeEEEeeCC--CCccccCCCceeEEEe-cCCCcceEEEEEE
Q 041325 368 VS--NLLFSGS-SDNTIRIWRRS--SSVTDHQKGYSCLAVL-EGHRRPVKCLTAV 416 (450)
Q Consensus 368 ~~--~~l~s~~-~dg~v~iwd~~--~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~ 416 (450)
++ ++|++++ .++.|.+|++. ++ +..... ..+...+.||.|.
T Consensus 314 spdg~~l~~~~~~~~~v~v~~~d~~~g--------~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 314 TPNGKYLLVACRDTNVIQIFERDQATG--------LLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp CTTSCEEEEEETTTTEEEEEEECTTTC--------CEEECSCCEECSSEEEEEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEEECCCC--------cEeecceeeeCCCCeEEEEc
Confidence 84 4677776 67899997654 32 222211 1234568888875
No 158
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.81 E-value=8.9e-18 Score=152.97 Aligned_cols=287 Identities=9% Similarity=0.025 Sum_probs=180.2
Q ss_pred ccceeeeEEeecCCCcceEE-----EEE--eCCEEEEeeC-CC--cEEEecCCCCCceeeeecCCCCcceeEEecCCCce
Q 041325 61 SEHQCSATLKVKGNSSYIPS-----LAI--AGKLLYGGSS-NG--EIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAV 130 (450)
Q Consensus 61 ~~~~~~~~l~~~~h~~~v~~-----~~~--d~~~l~tgs~-dg--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v 130 (450)
.++..+..+. .|...... .+| ||++|+.++. +| .|.+||+.+++.... ..++...+
T Consensus 18 ~~g~~~~~lt--~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l------------t~~~~~~~ 83 (388)
T 3pe7_A 18 STGAQVTRLT--PPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL------------TEGRGDNT 83 (388)
T ss_dssp TTCCEEEECS--CTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC------------CCSSCBCS
T ss_pred CCCcceEEec--CCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe------------eeCCCCCc
Confidence 3345566666 67665555 566 8999998887 67 488889988876554 33455555
Q ss_pred EEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeec
Q 041325 131 KSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVH 208 (450)
Q Consensus 131 ~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (450)
..+.|+|++ |+.++.++.|++||+.+++.... . ..
T Consensus 84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~--------------~-----------------------------~~ 120 (388)
T 3pe7_A 84 FGGFLSPDDDALFYVKDGRNLMRVDLATLEENVV--------------Y-----------------------------QV 120 (388)
T ss_dssp SSCEECTTSSEEEEEETTTEEEEEETTTCCEEEE--------------E-----------------------------EC
T ss_pred cceEEcCCCCEEEEEeCCCeEEEEECCCCcceee--------------e-----------------------------ec
Confidence 567899887 88888899999999998743111 0 11
Q ss_pred CCCceEEE--EEccCCCEEEEE----------------------eCCCcEEEEecCCCeEEEEeecccccceEEEEEee-
Q 041325 209 HVDTVSAL--ALSSDGSLLYST----------------------SWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSK- 263 (450)
Q Consensus 209 ~~~~v~~~--~~~~~~~~l~~~----------------------~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~- 263 (450)
+...+... .+++++++++.. ..+..|.+||+.+++..... .+...+..+.|+|
T Consensus 121 ~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~--~~~~~~~~~~~sp~ 198 (388)
T 3pe7_A 121 PAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVIL--QENQWLGHPIYRPY 198 (388)
T ss_dssp CTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEE--EESSCEEEEEEETT
T ss_pred hhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEee--cCCccccccEECCC
Confidence 22223222 347788777642 24478999999988755444 3566789999998
Q ss_pred cCCcEEEEEcC------CCcEEEEeCcchhhhccccchhhhhHhhcc--cceEEEEEcCCCCEEEEeeC-CC----cEEE
Q 041325 264 SNDGFVYTGSA------DTKIKVWKKLRAALQVNKKHSLVQTLEKHK--SAVTALALSTDGTVLYSGAC-DR----SILV 330 (450)
Q Consensus 264 ~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~--~~i~~l~~~~~~~~l~~g~~-dg----~i~v 330 (450)
++. .|+.... ...|.++|...+. ...+..+. ..+..++|+|||+.|+..+. ++ .|++
T Consensus 199 dg~-~l~~~~~~~~~~~~~~l~~~d~~~~~---------~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 268 (388)
T 3pe7_A 199 DDS-TVAFCHEGPHDLVDARMWLINEDGTN---------MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYS 268 (388)
T ss_dssp EEE-EEEEEECSCTTTSSCSEEEEETTSCC---------CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEE
T ss_pred CCC-EEEEEEecCCCCCcceEEEEeCCCCc---------eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEE
Confidence 655 4444433 3377788875443 11222222 35778899999997765443 22 3999
Q ss_pred EEcCCCceeeeCCCCCCceeeeccccCCccc---e--EEEEEeCCeEEEE---------eCCCeEEEeeCCCCccccCCC
Q 041325 331 WERDQGNYIVDGDDDSGHMVLKGALRGHTKA---I--LCLAVVSNLLFSG---------SSDNTIRIWRRSSSVTDHQKG 396 (450)
Q Consensus 331 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---v--~~~~~~~~~l~s~---------~~dg~v~iwd~~~~~~~~~~~ 396 (450)
||+.+++... .....++... . ..++.+++.|+.. ..+..|++||+.++
T Consensus 269 ~d~~~g~~~~-----------l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~------- 330 (388)
T 3pe7_A 269 ADPETLENRQ-----------LTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG------- 330 (388)
T ss_dssp ECTTTCCEEE-----------EEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT-------
T ss_pred EecCCCceEE-----------EEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC-------
Confidence 9999876321 1111111000 0 1344445555533 45678999999864
Q ss_pred ceeEEEecCCCc-----------ceEEEEEEecCCCCCCCCCCCCceEEEE-EcccCCcEEEEEe
Q 041325 397 YSCLAVLEGHRR-----------PVKCLTAVVDSDYSNRNSDHSSTSFLVY-SGSLDCEIKIWQI 449 (450)
Q Consensus 397 ~~~~~~~~~h~~-----------~v~~l~~~~~~~~~~~~~~~~~~~~~l~-s~~~Dg~i~iw~l 449 (450)
....+..|.. .+.+++|+||++ .|+ ++..+|...||.+
T Consensus 331 --~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~-------------~l~~~s~~~g~~~l~~~ 380 (388)
T 3pe7_A 331 --TQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDK-------------QILFTSDVHGKPALYLA 380 (388)
T ss_dssp --EEEEEEECCCCCCCBTTBSSTTCCCCEECTTSS-------------EEEEEECTTSSCEEEEE
T ss_pred --ceEEeccccCcccccccccccCCCCccCCCCCC-------------EEEEEecCCCceeEEEE
Confidence 2334444544 578889999998 555 4556888888865
No 159
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.81 E-value=6e-18 Score=150.84 Aligned_cols=253 Identities=7% Similarity=0.076 Sum_probs=170.0
Q ss_pred CCCCccceeeeEEeecCCCc-ceEEEEE--eCCEE-EEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEE
Q 041325 57 APAASEHQCSATLKVKGNSS-YIPSLAI--AGKLL-YGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKS 132 (450)
Q Consensus 57 ~~~~~~~~~~~~l~~~~h~~-~v~~~~~--d~~~l-~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 132 (450)
.....+++.++.+.. ++.. .+.+++| |++++ +++..++.|.+||+.+++........... .|...+..
T Consensus 15 ~~d~~~~~~~~~~~~-~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~-------~~~~~~~~ 86 (337)
T 1pby_B 15 VIDTEKMAVDKVITI-ADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE-------ERVKSLFG 86 (337)
T ss_dssp EEETTTTEEEEEEEC-TTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT-------EEEECTTC
T ss_pred EEECCCCcEEEEEEc-CCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc-------cccccccc
Confidence 334455677777763 2222 4778888 67665 55666899999999988866542211000 01235778
Q ss_pred EEEeCCe--EEEEe------------CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEE
Q 041325 133 LVVLGDK--LFSAH------------QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQV 198 (450)
Q Consensus 133 l~~~~~~--l~s~~------------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (450)
++|++++ ++++. .++.|.+||+.+++. ...++
T Consensus 87 ~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~----------------~~~~~------------------ 132 (337)
T 1pby_B 87 AALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR----------------RKAFE------------------ 132 (337)
T ss_dssp EEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE----------------EEEEE------------------
T ss_pred eEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE----------------EEEEe------------------
Confidence 9999776 66664 579999999987732 11111
Q ss_pred eecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeeccc-ccceEEEEEeecCCcEEEEEcCCC-
Q 041325 199 RRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAH-DDAINAIVVSKSNDGFVYTGSADT- 276 (450)
Q Consensus 199 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg- 276 (450)
....+.+++|+|++++++++ ++.|.+||+.+++....+.... ..+ +.|+|++..+++++..++
T Consensus 133 ----------~~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~---~~~s~dg~~l~~~~~~~~~ 197 (337)
T 1pby_B 133 ----------APRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWEAE---TYAQPDVLAVWNQHESSGV 197 (337)
T ss_dssp ----------CCSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTTTT---TBCCCBCCCCCCCCTTTTE
T ss_pred ----------CCCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeeccccCCC---ceeCCCccEEeeeccCCCc
Confidence 12356788999999988887 6899999999999887776322 122 266775553444433333
Q ss_pred ----------------------cEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcC
Q 041325 277 ----------------------KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERD 334 (450)
Q Consensus 277 ----------------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~ 334 (450)
.|.+||+.+++.. ...+..+...+..++|+|++++++++ ++.|++||+.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-------~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~ 268 (337)
T 1pby_B 198 MATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-------MREVRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLE 268 (337)
T ss_dssp EEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-------EEEEEECSSCEEEEEECTTSSEEEEE--ESEEEEEETT
T ss_pred eeeeeeccccccccccccccccceEEEeCCCCCce-------EeecCCCCCceeeEEECCCCCEEEEe--CCeEEEEECC
Confidence 4688998776521 11223345678899999999999988 7999999999
Q ss_pred CCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEEeeCCCC
Q 041325 335 QGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~ 389 (450)
+++.+. .+. ....+.+++|++ ++|++++.++.|++||+.++
T Consensus 269 ~~~~~~-------------~~~-~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~ 311 (337)
T 1pby_B 269 KNASIK-------------RVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETL 311 (337)
T ss_dssp TTEEEE-------------EEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTC
T ss_pred CCcCcc-------------eec-CCCceeeEEECCCCCEEEEEcCCCcEEEEECcCC
Confidence 876542 121 123467788874 57888889999999999874
No 160
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.79 E-value=4.5e-17 Score=146.78 Aligned_cols=278 Identities=12% Similarity=0.104 Sum_probs=170.4
Q ss_pred EEEEeeCC--CcEEEecC--CCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcC-CCce
Q 041325 87 LLYGGSSN--GEIRAWNR--DPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKID-NNTS 159 (450)
Q Consensus 87 ~l~tgs~d--g~v~vw~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~-~~~~ 159 (450)
+++.|+.. +.|.+|++ .++++...... ..+....+..++|++++ |++++.+ .|.+|++. +++.
T Consensus 4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~---------~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~ 73 (365)
T 1jof_A 4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRT---------EIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI 73 (365)
T ss_dssp EEEEEESSSSCEEEEEEEETTTTEEEEEEEE---------ECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE
T ss_pred EEEEEEccCCCcEEEEEEECCCCCEEEeeEE---------ccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE
Confidence 35556543 56887765 44443322100 01233478899999877 7788877 99999997 5522
Q ss_pred eEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCE--EEEEe--------
Q 041325 160 AYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSL--LYSTS-------- 229 (450)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~-------- 229 (450)
... .. ...+ +.+..++|+|+|++ ++++.
T Consensus 74 ~~~--------------~~---------------------------~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~ 111 (365)
T 1jof_A 74 VHE--------------AS---------------------------HPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYA 111 (365)
T ss_dssp EEE--------------EE---------------------------EECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEE
T ss_pred EEe--------------eE---------------------------eecC-CCCccEEECCCCCEEEEEEecCCcceecc
Confidence 100 00 0001 12445789999984 44543
Q ss_pred -----CCCcEEEEecC-CCeEEEEeec---ccccceEEEEEeecCCcEEEEE-cCCCcEEEEeCc-chhhhccccchhhh
Q 041325 230 -----WDRTFKIWRTS-DFRCLESVKN---AHDDAINAIVVSKSNDGFVYTG-SADTKIKVWKKL-RAALQVNKKHSLVQ 298 (450)
Q Consensus 230 -----~dg~i~iwd~~-~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~vwd~~-~~~~~~~~~~~~~~ 298 (450)
.+|.+.+|++. +++....+.. .+...+.+++|+|+++ +++++ ..++.|++||+. +++.. .+.
T Consensus 112 ~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~-~l~~~~~~~~~v~~~~~~~~g~~~------~~~ 184 (365)
T 1jof_A 112 NPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTET-YLYSADLTANKLWTHRKLASGEVE------LVG 184 (365)
T ss_dssp EEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSS-EEEEEETTTTEEEEEEECTTSCEE------EEE
T ss_pred ceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCC-EEEEEcCCCCEEEEEEECCCCCEE------Eee
Confidence 68999999997 4655443331 2456789999999665 45544 457899999987 44311 111
Q ss_pred hHh--hcccceEEEEEcCCCCEEEEeeC-CCcEEEEEcC--CCceeeeCCCCCCceeeeccc----cCCcc------ceE
Q 041325 299 TLE--KHKSAVTALALSTDGTVLYSGAC-DRSILVWERD--QGNYIVDGDDDSGHMVLKGAL----RGHTK------AIL 363 (450)
Q Consensus 299 ~~~--~~~~~i~~l~~~~~~~~l~~g~~-dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~----~~~~~------~v~ 363 (450)
.+. .+...+..++|+|||++|++++. ++.|.+|++. +++.... ......+ .+|.. .+.
T Consensus 185 ~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~-------~~~~~~~~~~~~g~~~~~~~~~~~~ 257 (365)
T 1jof_A 185 SVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYT-------HHSFPLIPPGIPDRDPETGKGLYRA 257 (365)
T ss_dssp EEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE-------EEEEESSCTTCCCBCTTTSSBSEEE
T ss_pred eEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEc-------cceEEcCCCCcCCcccccccccccc
Confidence 121 13456899999999999988775 6899999875 4442100 0000111 22332 577
Q ss_pred EEE-EeCC--eEEEEeCC-C-----eEEEeeCC-CCccccCCCceeEE-EecCCCcceEEEEEEe---cCCCCCCCCCCC
Q 041325 364 CLA-VVSN--LLFSGSSD-N-----TIRIWRRS-SSVTDHQKGYSCLA-VLEGHRRPVKCLTAVV---DSDYSNRNSDHS 429 (450)
Q Consensus 364 ~~~-~~~~--~l~s~~~d-g-----~v~iwd~~-~~~~~~~~~~~~~~-~~~~h~~~v~~l~~~~---~~~~~~~~~~~~ 429 (450)
.++ |+++ +|++++.+ + .|.+|++. ++ ....+. ....+...+..++|+| +++
T Consensus 258 ~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g------~~~~~~~~~~~~~~~~~~~a~sp~~~dg~--------- 322 (365)
T 1jof_A 258 DVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCG------SIEKQLFLSPTPTSGGHSNAVSPCPWSDE--------- 322 (365)
T ss_dssp EEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTS------CEEEEEEEEECSSCCTTCCCEEECTTCTT---------
T ss_pred cEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCC------CEEEeeeeeecCCCCcccceecCCCcCCC---------
Confidence 888 8754 66665543 2 89999986 32 112111 2333555677899999 788
Q ss_pred CceEEEEEccc-CCcEEEEEe
Q 041325 430 STSFLVYSGSL-DCEIKIWQI 449 (450)
Q Consensus 430 ~~~~~l~s~~~-Dg~i~iw~l 449 (450)
+|++++. ++.|.+|++
T Consensus 323 ----~l~v~~~~~~~v~v~~~ 339 (365)
T 1jof_A 323 ----WMAITDDQEGWLEIYRW 339 (365)
T ss_dssp ----EEEEECSSSCEEEEEEE
T ss_pred ----EEEEEEcCCCeEEEEEE
Confidence 7888776 589999986
No 161
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.79 E-value=7e-18 Score=166.37 Aligned_cols=305 Identities=12% Similarity=0.048 Sum_probs=186.3
Q ss_pred CCCccceeeeEEeecCCCc---ceEEEEE--eCCEEEEeeC---------CCcEEEecCCCCCceeeeecCCCCcceeEE
Q 041325 58 PAASEHQCSATLKVKGNSS---YIPSLAI--AGKLLYGGSS---------NGEIRAWNRDPNNYVNITSTDVGDHANVVA 123 (450)
Q Consensus 58 ~~~~~~~~~~~l~~~~h~~---~v~~~~~--d~~~l~tgs~---------dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~ 123 (450)
.....+++.+.+. +|.. .|.+++| ||++|++++. ++.|++||+.+++....
T Consensus 41 ~~~~~g~~~~~~~--~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~------------- 105 (719)
T 1z68_A 41 YNIETGQSYTILS--NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRG------------- 105 (719)
T ss_dssp EESSSCCEEEEEC--HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCS-------------
T ss_pred EEcCCCcEEEEEc--cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccc-------------
Confidence 3344556655555 4544 3889999 8999999876 78999999998875211
Q ss_pred ecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeec
Q 041325 124 TGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRH 201 (450)
Q Consensus 124 ~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (450)
..-...+..++|+||+ |+.+ .|+.|++|++.++........+.
T Consensus 106 ~~l~~~~~~~~~SPDG~~la~~-~~~~i~~~~~~~g~~~~l~~~~~---------------------------------- 150 (719)
T 1z68_A 106 NELPRPIQYLCWSPVGSKLAYV-YQNNIYLKQRPGDPPFQITFNGR---------------------------------- 150 (719)
T ss_dssp SCCCSSBCCEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCCCCB----------------------------------
T ss_pred eecCcccccceECCCCCEEEEE-ECCeEEEEeCCCCCcEEEecCCC----------------------------------
Confidence 0012468889999988 6665 47899999998874321110000
Q ss_pred ceeeeecCCCc---------eEEEEEccCCCEEEEEeCCC----------------------------------cEEEEe
Q 041325 202 KKCTWVHHVDT---------VSALALSSDGSLLYSTSWDR----------------------------------TFKIWR 238 (450)
Q Consensus 202 ~~~~~~~~~~~---------v~~~~~~~~~~~l~~~~~dg----------------------------------~i~iwd 238 (450)
....+.++.+. ..+++|+|||++|+.++.|. .|++||
T Consensus 151 ~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d 230 (719)
T 1z68_A 151 ENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIID 230 (719)
T ss_dssp TTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEE
T ss_pred cCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEE
Confidence 00011123222 25899999999999987552 788999
Q ss_pred cCCCeEE--EEee-----cccccceEEEEEeecCCcEEEEEcCC----CcEEEEe----CcchhhhccccchhhhhH---
Q 041325 239 TSDFRCL--ESVK-----NAHDDAINAIVVSKSNDGFVYTGSAD----TKIKVWK----KLRAALQVNKKHSLVQTL--- 300 (450)
Q Consensus 239 ~~~~~~~--~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~vwd----~~~~~~~~~~~~~~~~~~--- 300 (450)
+.+++.. ..+. ..+...+..++|+|+ +.++++.... ..|.+|| +.+++ ....+
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD-~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~--------~~~~~~~~ 301 (719)
T 1z68_A 231 TTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTD-ERVCLQWLKRVQNVSVLSICDFREDWQTWD--------CPKTQEHI 301 (719)
T ss_dssp SSCHHHHCCEECCCCHHHHTSCEEEEEEEESSS-SEEEEEEEESSTTEEEEEEEEECSSSSSEE--------CCGGGEEE
T ss_pred CCCCCccceeEccCCccCCCCcceEEEeEEeCC-CeEEEEEeccccCeEEEEEEcccCCCCCCc--------eEEEEecc
Confidence 9987642 1221 146778999999996 4455553322 2488889 66554 22233
Q ss_pred -hhcccceE-----EEEEcCCCCEEEE--eeCCC--cEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEE-eC
Q 041325 301 -EKHKSAVT-----ALALSTDGTVLYS--GACDR--SILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV-VS 369 (450)
Q Consensus 301 -~~~~~~i~-----~l~~~~~~~~l~~--g~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~ 369 (450)
..+...+. .++|+|||+.|+. ...+| .|.+||+.+++. ..+..+...+..+.+ ++
T Consensus 302 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~--------------~~lt~~~~~v~~~~~~d~ 367 (719)
T 1z68_A 302 EESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA--------------IQITSGKWEAINIFRVTQ 367 (719)
T ss_dssp EECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC--------------EECSCSSSCEEEEEEECS
T ss_pred cccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce--------------EecccCceEEEEEEEEeC
Confidence 24555565 7899999996554 44555 567777765542 123334444554443 45
Q ss_pred CeEEEEeC-----CCeEEEeeCCCCccccCCCceeEEE-ecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccC--
Q 041325 370 NLLFSGSS-----DNTIRIWRRSSSVTDHQKGYSCLAV-LEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLD-- 441 (450)
Q Consensus 370 ~~l~s~~~-----dg~v~iwd~~~~~~~~~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~D-- 441 (450)
+.|+..+. ++.+++|.+..... ....+++.. +.+|...+..+.|+++++. ++++++.+
T Consensus 368 ~~i~~~~~~~~~~~~~~~l~~~~~~~g--~~~~~~l~~~~~~~~~~~~~~~~s~dg~~------------l~~~~s~~~~ 433 (719)
T 1z68_A 368 DSLFYSSNEFEEYPGRRNIYRISIGSY--PPSKKCVTCHLRKERCQYYTASFSDYAKY------------YALVCYGPGI 433 (719)
T ss_dssp SEEEEEESCGGGCTTCBEEEEEECSSS--SCCEEESSTTTTTTTBCBEEEEECGGGSS------------EEEEECCBSS
T ss_pred CEEEEEEecCCCCCceEEEEEEeCCCC--CCCceeccCccCCCCCceEEEEECCCCCE------------EEEEcCCCCC
Confidence 55555554 48889998764100 000111111 2236677889999999884 44444444
Q ss_pred CcEEEEEe
Q 041325 442 CEIKIWQI 449 (450)
Q Consensus 442 g~i~iw~l 449 (450)
..+.+||+
T Consensus 434 p~~~l~d~ 441 (719)
T 1z68_A 434 PISTLHDG 441 (719)
T ss_dssp CEEEEECS
T ss_pred CeEEEEEC
Confidence 45677765
No 162
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.74 E-value=5.5e-16 Score=152.91 Aligned_cols=242 Identities=11% Similarity=0.060 Sum_probs=153.1
Q ss_pred ceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCC-----ceEEEEEeCCe--EEEEeCC-
Q 041325 77 YIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGD-----AVKSLVVLGDK--LFSAHQD- 146 (450)
Q Consensus 77 ~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~v~~l~~~~~~--l~s~~~d- 146 (450)
...+++| ||++++++ ||.|++||+.+++.... +.+|.. ....+.|+||+ |+.++.+
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~ 83 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVF------------LENSTFDEFGHSINDYSISPDGQFILLEYNYV 83 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEE------------ECTTTTTTCCSCCCEEEECTTSSEEEEEEEEE
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCCceEEE------------EechhhhhhcccccceEECCCCCEEEEEECCe
Confidence 4557888 78888886 89999999999886554 334432 23458889888 7777665
Q ss_pred --------CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEE
Q 041325 147 --------HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALAL 218 (450)
Q Consensus 147 --------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 218 (450)
+.+.+||+.+++.. .+..|...+...+|
T Consensus 84 ~~~r~~~~~~~~~~d~~~~~~~--------------------------------------------~l~~~~~~~~~~~~ 119 (740)
T 4a5s_A 84 KQWRHSYTASYDIYDLNKRQLI--------------------------------------------TEERIPNNTQWVTW 119 (740)
T ss_dssp ECSSSCEEEEEEEEETTTTEEC--------------------------------------------CSSCCCTTEEEEEE
T ss_pred eeEEEccceEEEEEECCCCcEE--------------------------------------------EcccCCCcceeeEE
Confidence 56779999988321 11235667999999
Q ss_pred ccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccce-----------------EEEEEeecCCcEEEEEcC-CC----
Q 041325 219 SSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAI-----------------NAIVVSKSNDGFVYTGSA-DT---- 276 (450)
Q Consensus 219 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v-----------------~~~~~~~~~~~~l~~~~~-dg---- 276 (450)
+|||+.|+.+. ++.|.+||+.+++.......++...+ ..+.|+|+++ .|+.++. ++
T Consensus 120 SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~-~la~~~~d~~~v~~ 197 (740)
T 4a5s_A 120 SPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGT-FLAYAQFNDTEVPL 197 (740)
T ss_dssp CSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSS-EEEEEEEECTTCCE
T ss_pred CCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCC-EEEEEEEcccCCce
Confidence 99999999885 78999999988875543222222222 3588999666 5554432 11
Q ss_pred -------------------------------cEEEEeCcc---hhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEe
Q 041325 277 -------------------------------KIKVWKKLR---AALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSG 322 (450)
Q Consensus 277 -------------------------------~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g 322 (450)
.|++||+.+ ++............+.++...+..++|+|||+.++..
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~ 277 (740)
T 4a5s_A 198 IEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQW 277 (740)
T ss_dssp EEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEE
T ss_pred EEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEE
Confidence 477788766 4200000000111223477789999999999976655
Q ss_pred eC----CCcEEEEEcCCCc----eeeeCCCCCCceeeeccc--cCCccceE-----EEEEeCC--eEE-EEe-CCC--eE
Q 041325 323 AC----DRSILVWERDQGN----YIVDGDDDSGHMVLKGAL--RGHTKAIL-----CLAVVSN--LLF-SGS-SDN--TI 381 (450)
Q Consensus 323 ~~----dg~i~vwd~~~~~----~~~~~~~~~~~~~~~~~~--~~~~~~v~-----~~~~~~~--~l~-s~~-~dg--~v 381 (450)
.. +..|++||+.+++ +.. ...+ ..|...|. ...|+++ .|+ ..+ .+| .|
T Consensus 278 ~~r~~~~~~i~~~d~~tg~~~~~~~~-----------~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l 346 (740)
T 4a5s_A 278 LRRIQNYSVMDICDYDESSGRWNCLV-----------ARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHI 346 (740)
T ss_dssp EESSTTEEEEEEEEEETTTTEEEECG-----------GGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEE
T ss_pred eCCCCCEEEEEEEECCCCccccceeE-----------EEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEE
Confidence 33 3479999999876 220 0111 23443332 5667744 544 454 444 57
Q ss_pred EEeeCCCC
Q 041325 382 RIWRRSSS 389 (450)
Q Consensus 382 ~iwd~~~~ 389 (450)
++||...+
T Consensus 347 ~~~~~~~~ 354 (740)
T 4a5s_A 347 CYFQIDKK 354 (740)
T ss_dssp EEEETTCS
T ss_pred EEEECCCC
Confidence 88887753
No 163
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.73 E-value=1e-14 Score=129.33 Aligned_cols=200 Identities=12% Similarity=0.111 Sum_probs=142.9
Q ss_pred CCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCe-EEEEee--------cccccceEEEEEeecCCcEEEEEc-CCCcE
Q 041325 209 HVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFR-CLESVK--------NAHDDAINAIVVSKSNDGFVYTGS-ADTKI 278 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~--------~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i 278 (450)
+-.....++++++|+++++...++.|++||..... .+..+. ..+......++++|.+..++++.+ .++.|
T Consensus 89 ~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I 168 (329)
T 3fvz_A 89 LFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRI 168 (329)
T ss_dssp TCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEE
T ss_pred ccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeE
Confidence 34468899999999988888889999999986542 444442 133446889999984455677775 68999
Q ss_pred EEEeCcchhhhccccchhhhhHh----------hcccceEEEEEcCC-CCEEEEeeCCCcEEEEEcCCCceeeeCCCCCC
Q 041325 279 KVWKKLRAALQVNKKHSLVQTLE----------KHKSAVTALALSTD-GTVLYSGACDRSILVWERDQGNYIVDGDDDSG 347 (450)
Q Consensus 279 ~vwd~~~~~~~~~~~~~~~~~~~----------~~~~~i~~l~~~~~-~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~ 347 (450)
++||.. +. .+..+. .+-.....++++|+ ++++++...++.|++||..+++.+..+
T Consensus 169 ~~~~~~-g~--------~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~----- 234 (329)
T 3fvz_A 169 VQFSPS-GK--------FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI----- 234 (329)
T ss_dssp EEECTT-SC--------EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE-----
T ss_pred EEEcCC-CC--------EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE-----
Confidence 999943 32 122221 22344789999998 777777778999999999977765321
Q ss_pred ceeeeccccCCccceEEEEEeCCeEE--------EEeCCCeEEEeeCCCCccccCCCceeEEEe---cCCCcceEEEEEE
Q 041325 348 HMVLKGALRGHTKAILCLAVVSNLLF--------SGSSDNTIRIWRRSSSVTDHQKGYSCLAVL---EGHRRPVKCLTAV 416 (450)
Q Consensus 348 ~~~~~~~~~~~~~~v~~~~~~~~~l~--------s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~---~~h~~~v~~l~~~ 416 (450)
....+...+.++++.+..++ +...+..|++||..++ +.+..+ .++...+..|+++
T Consensus 235 ------~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g--------~~~~~~~~~~~~~~~p~~ia~~ 300 (329)
T 3fvz_A 235 ------KHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSG--------EIIDVFKPVRKHFDMPHDIVAS 300 (329)
T ss_dssp ------CCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTC--------CEEEEECCSSSCCSSEEEEEEC
T ss_pred ------eccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCC--------eEEEEEcCCCCccCCeeEEEEC
Confidence 11234455667777664332 3334558999998875 455555 3677789999999
Q ss_pred ecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 417 VDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+++. ++++...++.|++|++
T Consensus 301 ~dG~-------------lyvad~~~~~I~~~~~ 320 (329)
T 3fvz_A 301 EDGT-------------VYIGDAHTNTVWKFTL 320 (329)
T ss_dssp TTSE-------------EEEEESSSCCEEEEEE
T ss_pred CCCC-------------EEEEECCCCEEEEEeC
Confidence 9997 8999999999999986
No 164
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.73 E-value=1.9e-15 Score=135.50 Aligned_cols=272 Identities=11% Similarity=0.109 Sum_probs=169.3
Q ss_pred CCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEe----------CCCeEEEEEcCCCcee
Q 041325 93 SNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAH----------QDHKIRVWKIDNNTSA 160 (450)
Q Consensus 93 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~----------~dg~i~iw~~~~~~~~ 160 (450)
.|+.|.+||..+++.... +..+..+ .++|++++ ++++. .++.|.+||..+.+.
T Consensus 29 ~d~~v~v~D~~t~~~~~~------------i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~- 93 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGM------------VPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTF- 93 (361)
T ss_dssp GGCEEEEEETTTCCEEEE------------EECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCE-
T ss_pred ccCeEEEEECCCCeEEEE------------ecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcE-
Confidence 478999999988886544 2333334 89999887 66664 367899999987733
Q ss_pred EEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeC--CCcEEEEe
Q 041325 161 YYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSW--DRTFKIWR 238 (450)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd 238 (450)
+..++..... ..+......++++|+|++|+++.. ++.|.+||
T Consensus 94 ---------------~~~i~~~~~~---------------------~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d 137 (361)
T 2oiz_A 94 ---------------EKEISLPPKR---------------------VQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVD 137 (361)
T ss_dssp ---------------EEEEEECTTB---------------------CCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEE
T ss_pred ---------------EEEEEcCccc---------------------cccCCCcceEEECCCCCEEEEECCCCCCeEEEEE
Confidence 2222110000 012234677999999999998864 68999999
Q ss_pred cCCCeEEEE-eecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc-hhhhccccchhhhhHhhcccceEEEEEcCCC
Q 041325 239 TSDFRCLES-VKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR-AALQVNKKHSLVQTLEKHKSAVTALALSTDG 316 (450)
Q Consensus 239 ~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 316 (450)
+.+++.+.. +. .. ....+.+.|.+...+++.+.||.+.+|+... ++... .......+.....+ ..+.+++++
T Consensus 138 ~~~~~~~~~~i~--~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~--~~~~~~~~~~~~~~-~~~~~~~~g 211 (361)
T 2oiz_A 138 VAKGDYVEDVTA--AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVAS--QSRSKQMFSVKDDP-IFIAPALDK 211 (361)
T ss_dssp TTTTEEEEEEGG--GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEE--EEECCCCSCTTTSC-BCSCCEECS
T ss_pred CCCCcEEEEEec--CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEee--eccccceEcCCCCc-eEEEecccC
Confidence 999988877 64 22 2233556775556788888999999998754 22100 00000111111222 123446777
Q ss_pred CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeec----cccCCccceEEEEEe--CCeEEEEeC-----------CC
Q 041325 317 TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKG----ALRGHTKAILCLAVV--SNLLFSGSS-----------DN 379 (450)
Q Consensus 317 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~--~~~l~s~~~-----------dg 379 (450)
..++..+.++.|.++|+...+..... ...... ...........++++ ++.++++.. ++
T Consensus 212 ~~~~~~~~~~~v~v~d~~~~~~~~~~-----~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~ 286 (361)
T 2oiz_A 212 DKAHFVSYYGNVYSADFSGDEVKVDG-----PWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAA 286 (361)
T ss_dssp SEEEEEBTTSEEEEEECSSSSCEEEE-----EEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCS
T ss_pred CEEEEEeCCCeEEEEEecCCCceecc-----cccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCc
Confidence 77777788999999998754321000 000000 000000111124555 345554432 35
Q ss_pred eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 380 TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 380 ~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
.|.+||+.+. +.+..+..+. +.+++|+|+++ +|++++. +.|.+||++
T Consensus 287 ~v~viD~~t~--------~~v~~i~~~~--p~~ia~spdg~-------------~l~v~n~-~~v~v~D~~ 333 (361)
T 2oiz_A 287 EIWVMDTKTK--------QRVARIPGRD--ALSMTIDQQRN-------------LMLTLDG-GNVNVYDIS 333 (361)
T ss_dssp EEEEEETTTT--------EEEEEEECTT--CCEEEEETTTT-------------EEEEECS-SCEEEEECS
T ss_pred eEEEEECCCC--------cEEEEEecCC--eeEEEECCCCC-------------EEEEeCC-CeEEEEECC
Confidence 8999999874 7778887776 99999999999 8888876 999999964
No 165
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.72 E-value=1.2e-14 Score=126.26 Aligned_cols=241 Identities=11% Similarity=0.212 Sum_probs=161.7
Q ss_pred cCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecc
Q 041325 125 GNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHK 202 (450)
Q Consensus 125 ~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (450)
++-..+.+++++++. +++...++.|.+||.+.... ..+....
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~-----------------~~~~~~~------------------- 70 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFK-----------------FQFGECG------------------- 70 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEE-----------------EEECCBS-------------------
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEE-----------------EEecccC-------------------
Confidence 444678999998766 55557789999999874311 1110000
Q ss_pred eeeeecCCCceEEEEE-ccCCCEEEEEeC-CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEE
Q 041325 203 KCTWVHHVDTVSALAL-SSDGSLLYSTSW-DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKV 280 (450)
Q Consensus 203 ~~~~~~~~~~v~~~~~-~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v 280 (450)
...++...+..+++ .++++++++... ++.|.+|| .+++.+..+...+...+..+++.+++ .++++...++.|.+
T Consensus 71 --~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~ 146 (286)
T 1q7f_A 71 --KRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKG-RIIVVECKVMRVII 146 (286)
T ss_dssp --SSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTS-CEEEEETTTTEEEE
T ss_pred --CCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCC-CEEEEECCCCEEEE
Confidence 00023446889999 467776666543 88999999 56777776654445678999999854 47777778899999
Q ss_pred EeCcchhhhccccchhhhhH--hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC
Q 041325 281 WKKLRAALQVNKKHSLVQTL--EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358 (450)
Q Consensus 281 wd~~~~~~~~~~~~~~~~~~--~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (450)
||..... ...+ ..+...+..++++++|+++++...++.|++||.. ++.+.. ....++
T Consensus 147 ~~~~g~~---------~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~-----------~~~~g~ 205 (286)
T 1q7f_A 147 FDQNGNV---------LHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQ-----------IGGEGI 205 (286)
T ss_dssp ECTTSCE---------EEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEE-----------ESCTTT
T ss_pred EcCCCCE---------EEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEE-----------EccCCc
Confidence 9964321 1111 1234568999999999988888889999999975 333311 111222
Q ss_pred ccceEEEEEeC--CeEEEEeCCC-eEEEeeCCCCccccCCCceeEEEecCCC--cceEEEEEEecCCCCCCCCCCCCceE
Q 041325 359 TKAILCLAVVS--NLLFSGSSDN-TIRIWRRSSSVTDHQKGYSCLAVLEGHR--RPVKCLTAVVDSDYSNRNSDHSSTSF 433 (450)
Q Consensus 359 ~~~v~~~~~~~--~~l~s~~~dg-~v~iwd~~~~~~~~~~~~~~~~~~~~h~--~~v~~l~~~~~~~~~~~~~~~~~~~~ 433 (450)
...+..+++++ +++++...++ .|.+||... +.+..+..+. ..+.++++.+++.
T Consensus 206 ~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g---------~~~~~~~~~~~~~~~~~i~~~~~g~------------- 263 (286)
T 1q7f_A 206 TNYPIGVGINSNGEILIADNHNNFNLTIFTQDG---------QLISALESKVKHAQCFDVALMDDGS------------- 263 (286)
T ss_dssp SCSEEEEEECTTCCEEEEECSSSCEEEEECTTS---------CEEEEEEESSCCSCEEEEEEETTTE-------------
T ss_pred cCCCcEEEECCCCCEEEEeCCCCEEEEEECCCC---------CEEEEEcccCCCCcceeEEECCCCc-------------
Confidence 35678888874 4667776675 999999653 3344444333 3477999999988
Q ss_pred EEEEcccCCcEEEEEe
Q 041325 434 LVYSGSLDCEIKIWQI 449 (450)
Q Consensus 434 ~l~s~~~Dg~i~iw~l 449 (450)
++++ +.|+.|++|++
T Consensus 264 l~vs-~~~~~v~v~~~ 278 (286)
T 1q7f_A 264 VVLA-SKDYRLYIYRY 278 (286)
T ss_dssp EEEE-ETTTEEEEEEC
T ss_pred EEEE-CCCCeEEEEEc
Confidence 7777 57999999986
No 166
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.72 E-value=5.2e-15 Score=132.45 Aligned_cols=247 Identities=12% Similarity=0.098 Sum_probs=158.7
Q ss_pred CCCccceeeeEEeecCCC-cceEEEEE--eCCEE-EEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEE
Q 041325 58 PAASEHQCSATLKVKGNS-SYIPSLAI--AGKLL-YGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSL 133 (450)
Q Consensus 58 ~~~~~~~~~~~l~~~~h~-~~v~~~~~--d~~~l-~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l 133 (450)
....+++.++++. .+. ..+..++| |++++ +++..++.|.+||+.+++............ .+...+..+
T Consensus 26 ~d~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~------~~~~~~~~~ 97 (349)
T 1jmx_B 26 VDVASDTVYKSCV--MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPG------EVGRSMYSF 97 (349)
T ss_dssp EETTTTEEEEEEE--CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTT------EEEECSSCE
T ss_pred EECCCCcEEEEEe--cCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccc------cccccccce
Confidence 3445567777777 332 25678888 67765 455678999999999887655422110000 002347889
Q ss_pred EEeCCe--EEEEeCC------------CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEe
Q 041325 134 VVLGDK--LFSAHQD------------HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVR 199 (450)
Q Consensus 134 ~~~~~~--l~s~~~d------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (450)
+|++++ +++++.+ +.|.+||+.+++.. ..+.
T Consensus 98 ~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-------------~~~~---------------------- 142 (349)
T 1jmx_B 98 AISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA-------------KPVR---------------------- 142 (349)
T ss_dssp EECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB-------------CCSE----------------------
T ss_pred EECCCCCEEEEEcccccccccccccCCCeEEEEECCCcccc-------------ceee----------------------
Confidence 999876 7777755 89999999875210 0000
Q ss_pred ecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeeccccc-----------------------ce
Q 041325 200 RHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDD-----------------------AI 256 (450)
Q Consensus 200 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------------------~v 256 (450)
...+...+.+++|+|+++ +++++ +.|.+||+.+++.+..+...... ..
T Consensus 143 ------~~~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (349)
T 1jmx_B 143 ------TFPMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSML 213 (349)
T ss_dssp ------EEECCSSCCCEEECTTSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEE
T ss_pred ------eccCCCcccceeECCCCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEee
Confidence 012334688899999999 55554 44999999999887776522100 23
Q ss_pred EEEEEeecC----------CcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcC-CCCEEEEeeCC
Q 041325 257 NAIVVSKSN----------DGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST-DGTVLYSGACD 325 (450)
Q Consensus 257 ~~~~~~~~~----------~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~g~~d 325 (450)
..+++.++. ..++.....++.+++|++. .+...+..++|+| ++++++++ +
T Consensus 214 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~sp~dg~~l~~~--~ 274 (349)
T 1jmx_B 214 YTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA-----------------DLTELYFTGLRSPKDPNQIYGV--L 274 (349)
T ss_dssp EEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE-----------------ECSSCEEEEEECSSCTTEEEEE--E
T ss_pred eeeeecCCCcCCccccccceeEEEEeccCCcEEecccc-----------------cCCCcceeeEecCCCCCEEEEE--c
Confidence 345554321 1123344555666666641 1445678999999 99999988 8
Q ss_pred CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEEeeCCCC
Q 041325 326 RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 326 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~ 389 (450)
+.|.+||+.+++.+. .+. ....+.+++|++ ++|++++.++.|++||..++
T Consensus 275 ~~v~~~d~~~~~~~~-------------~~~-~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~ 326 (349)
T 1jmx_B 275 NRLAKYDLKQRKLIK-------------AAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 326 (349)
T ss_dssp SEEEEEETTTTEEEE-------------EEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTT
T ss_pred CeEEEEECccCeEEE-------------EEc-CCCCccceEECCCCCEEEEecCCCeEEEEecccc
Confidence 899999999877542 111 123356788874 47777888999999999874
No 167
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.72 E-value=8.7e-16 Score=149.98 Aligned_cols=293 Identities=9% Similarity=0.011 Sum_probs=169.9
Q ss_pred CCCcceEEEEEeCCEEE--Ee--eCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceE---------EEEEe--C
Q 041325 73 GNSSYIPSLAIAGKLLY--GG--SSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVK---------SLVVL--G 137 (450)
Q Consensus 73 ~h~~~v~~~~~d~~~l~--tg--s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~---------~l~~~--~ 137 (450)
+|...+..++++++.++ +. +.++...||....+..... +..|...+. ...|+ |
T Consensus 21 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------------l~~~~~~~~~~~~~~~~~~~~~~~SP 88 (662)
T 3azo_A 21 SRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEES------------ALPAPWNVRNRVFEYSGFPWAGVPRP 88 (662)
T ss_dssp HTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEE------------SSCTTCCBCCCGGGTCCCCEEEECCS
T ss_pred hcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcce------------eCCCCccccccccccCCccceeeeec
Confidence 89999999999766544 34 4478899998543332222 234444444 55565 5
Q ss_pred Ce-E-EEEeC--CCeEEEEEcC--C-CceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCC
Q 041325 138 DK-L-FSAHQ--DHKIRVWKID--N-NTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHV 210 (450)
Q Consensus 138 ~~-l-~s~~~--dg~i~iw~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (450)
|+ . +..+. +..|.+|++. . +.. ..+...+ ...|.
T Consensus 89 Dg~~~la~~~~~~~~l~~~~~~~~g~~~~--------------~~l~~~~-------------------------~~~~~ 129 (662)
T 3azo_A 89 AGGPLLVFTHFGDQRLYAFEPDAPGGAVP--------------RPLTPVS-------------------------AVGGG 129 (662)
T ss_dssp SSSCEEEEEBTTTCCEEEECTTSTTCCCC--------------EECSCCC-------------------------CSTTC
T ss_pred CCCeEEEEEECCCCeEEEEcCCCCCCCCC--------------EeccCCc-------------------------cCCCC
Confidence 54 3 33333 4556666654 2 311 0000000 00145
Q ss_pred CceEEEEEccCCCEEEEEeCC----------CcEEEEecCC------CeEEEEeecccccceEEEEEeecCCcEEEEEcC
Q 041325 211 DTVSALALSSDGSLLYSTSWD----------RTFKIWRTSD------FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSA 274 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 274 (450)
..+..++|+|||+.|+.++.+ ..|.+||+.+ ++..... ..+...+..++|+|++. .|+.++.
T Consensus 130 ~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~SpDG~-~la~~~~ 207 (662)
T 3azo_A 130 LRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELS-DDAHRFVTGPRLSPDGR-QAVWLAW 207 (662)
T ss_dssp EEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESS-CSCSSEECCCEECTTSS-EEEEEEE
T ss_pred ccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEE-ecCCCcccCceECCCCC-EEEEEEC
Confidence 578899999999999998876 5899999987 5543332 12446788899999665 5555543
Q ss_pred C--------CcEEEEeCc-chhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCC--cEEEEEcCCCceeeeCC
Q 041325 275 D--------TKIKVWKKL-RAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDR--SILVWERDQGNYIVDGD 343 (450)
Q Consensus 275 d--------g~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg--~i~vwd~~~~~~~~~~~ 343 (450)
+ ..|++||+. ++.. .........+...+..++|+|||++++++..++ .|.+||+.+++......
T Consensus 208 ~~~~~~~~~~~i~~~d~~~~g~~-----~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~ 282 (662)
T 3azo_A 208 DHPRMPWEGTELKTARVTEDGRF-----ADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR 282 (662)
T ss_dssp CTTCCTTTCEEEEEEEECTTSCE-----EEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC
T ss_pred CCCCCCCCCcEEEEEEECCCCcc-----cccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccc
Confidence 3 479999987 3410 001222233467889999999999888888888 66777765655331111
Q ss_pred CCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCC
Q 041325 344 DDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDY 421 (450)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 421 (450)
...... ...-...+..+++. +.++++++. +.++||.+... ...+..+..|...+..+. ++++..
T Consensus 283 ~~~~~~-----~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~-------~~~~~~l~~~~~~~~~~~-s~~~~~ 348 (662)
T 3azo_A 283 REEEFA-----GPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPE-------SGELVDAAGPWTEWAATL-TVSGTR 348 (662)
T ss_dssp CSSBSS-----CCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETT-------TTEEEECCSSCCEEEEEE-EEETTE
T ss_pred cccccc-----CccccccCceEeEeCCCEEEEEEEc-CccEEEEEECC-------CCcEEEecCCCCeEEEEE-ecCCCE
Confidence 000000 00000013456775 448888888 99999944321 023566777777777662 445441
Q ss_pred CCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 422 SNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 422 ~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
.++++++.+....+|.
T Consensus 349 -----------~~~~~~~~~~~~~i~~ 364 (662)
T 3azo_A 349 -----------AVGVAASPRTAYEVVE 364 (662)
T ss_dssp -----------EEEEEEETTEEEEEEE
T ss_pred -----------EEEEEcCCCCCCEEEE
Confidence 1455555555555553
No 168
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.71 E-value=1.5e-16 Score=145.24 Aligned_cols=286 Identities=10% Similarity=-0.003 Sum_probs=166.1
Q ss_pred eEEEEE--eCCEEEEeeCC---CcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEE
Q 041325 78 IPSLAI--AGKLLYGGSSN---GEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIR 150 (450)
Q Consensus 78 v~~~~~--d~~~l~tgs~d---g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~ 150 (450)
+.+++| ||++|+....+ ..|.+||+.+++.... ..++......+.|+|++ |+.++.++.|+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l------------~~~~~~~~~~~~~spdg~~l~~~~~~~~l~ 105 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQL------------TEGKGDNTFGGFISTDERAFFYVKNELNLM 105 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEEC------------CCSSCBCTTTCEECTTSSEEEEEETTTEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEe------------ecCCCCccccceECCCCCEEEEEEcCCcEE
Confidence 666777 89998876543 3688889888764433 11222223347789876 88888889999
Q ss_pred EEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCc-eEEEeecceeeeecCCCceEEEEEccCCCEEEEE-
Q 041325 151 VWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANN-YVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST- 228 (450)
Q Consensus 151 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~- 228 (450)
+||+.+++.......... ... ... .+++.... .... ....+.++|+++.++..
T Consensus 106 ~~d~~~~~~~~~~~~~~~---~~~--------~g~-~l~~~~~~~~~~~-------------~~~~~~~spdg~~~~~~~ 160 (396)
T 3c5m_A 106 KVDLETLEEQVIYTVDEE---WKG--------YGT-WVANSDCTKLVGI-------------EILKRDWQPLTSWEKFAE 160 (396)
T ss_dssp EEETTTCCEEEEEECCTT---EEE--------EEE-EEECTTSSEEEEE-------------EEEGGGCCCCCSHHHHHH
T ss_pred EEECCCCCcEEEEecccc---cCC--------CCC-EEEeccCCccccc-------------cccccccCCCCcceeeee
Confidence 999988754222111100 000 000 00000000 0000 00124578888877654
Q ss_pred ----eCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC------CcEEEEeCcchhhhccccchhhh
Q 041325 229 ----SWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD------TKIKVWKKLRAALQVNKKHSLVQ 298 (450)
Q Consensus 229 ----~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~ 298 (450)
..+..|.+||+.+++..... .+...+..+.|+|.++..++..+.+ ..|.+||+..++ . .
T Consensus 161 ~~~~~~~~~l~~~d~~~g~~~~~~--~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~--------~-~ 229 (396)
T 3c5m_A 161 FYHTNPTCRLIKVDIETGELEVIH--QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSN--------V-R 229 (396)
T ss_dssp HHHTCCCEEEEEEETTTCCEEEEE--EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCC--------C-E
T ss_pred eccCCCcceEEEEECCCCcEEeec--cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCc--------e-e
Confidence 45678999999988765544 3567789999998323344443333 368888875443 1 1
Q ss_pred hHhhc--ccceEEEEEcCCCCEEEEeeCC-----CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe---
Q 041325 299 TLEKH--KSAVTALALSTDGTVLYSGACD-----RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--- 368 (450)
Q Consensus 299 ~~~~~--~~~i~~l~~~~~~~~l~~g~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--- 368 (450)
.+..+ ...+..++|+|||++|+.++.+ +.|++||+.+++... .....++ . +.|+
T Consensus 230 ~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~-----------l~~~~~~----~-~~~s~~d 293 (396)
T 3c5m_A 230 KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEE-----------VMVMPPC----S-HLMSNFD 293 (396)
T ss_dssp ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEE-----------EEECCSE----E-EEEECSS
T ss_pred EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEE-----------eeeCCCC----C-CCccCCC
Confidence 11111 2357889999999988777544 449999998775431 1111121 1 5564
Q ss_pred CCeEEEEe----------------CCCeEEEeeCCCCccccCCCceeEEEecCCCc-----------ceEEEEEEecCCC
Q 041325 369 SNLLFSGS----------------SDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRR-----------PVKCLTAVVDSDY 421 (450)
Q Consensus 369 ~~~l~s~~----------------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~-----------~v~~l~~~~~~~~ 421 (450)
+++++.++ .++.|++||+.++. ...+..+.. .+..+.|+|+++
T Consensus 294 g~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~---------~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~- 363 (396)
T 3c5m_A 294 GSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKS---------AQKLCKHSTSWDVLDGDRQITHPHPSFTPNDD- 363 (396)
T ss_dssp SSEEEEEECCC----------CCCCCCEEEEEETTTTB---------CCEEEECCCCCCCBTTBSSTTCCCCEECTTSS-
T ss_pred CceEEEecCCcceeeccccccccCCCCcEEEEecccCc---------eEEccCCCCccccccccccCCCCCceEccCCC-
Confidence 44666544 34789999988641 122333333 256678999988
Q ss_pred CCCCCCCCCceEEEEEcc-cCCcEEEEEe
Q 041325 422 SNRNSDHSSTSFLVYSGS-LDCEIKIWQI 449 (450)
Q Consensus 422 ~~~~~~~~~~~~~l~s~~-~Dg~i~iw~l 449 (450)
.|+.++ .++...||.+
T Consensus 364 ------------~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 364 ------------GVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp ------------EEEEEECTTSSCEEEEE
T ss_pred ------------eEEEEecCCCCceEEEE
Confidence 565554 4666677654
No 169
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.71 E-value=9.9e-15 Score=130.61 Aligned_cols=254 Identities=11% Similarity=0.123 Sum_probs=165.8
Q ss_pred ceEEEEEeCCEEEEee---------CCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeC
Q 041325 77 YIPSLAIAGKLLYGGS---------SNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQ 145 (450)
Q Consensus 77 ~v~~~~~d~~~l~tgs---------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~ 145 (450)
.+...++||++++... .++.|.+||+.+++.... ..+..++|+|++ |+.++.
T Consensus 16 ~~~~~~~dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-----------------~~~~~~~~SpDg~~la~~~~ 78 (347)
T 2gop_A 16 YLSDPRTKGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-----------------ENATMPRISPDGKKIAFMRA 78 (347)
T ss_dssp EEEEEEEETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-----------------ESCEEEEECTTSSEEEEEEE
T ss_pred EcccceECCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-----------------ccCCCeEECCCCCEEEEEEe
Confidence 3455555888887642 257899999988763221 467889999887 666554
Q ss_pred C---Ce--EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc
Q 041325 146 D---HK--IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS 220 (450)
Q Consensus 146 d---g~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 220 (450)
+ +. |.+|++.+++.. .+..+.. +..++|+|
T Consensus 79 ~~~~~~~~l~~~~~~~g~~~--------------------------------------------~l~~~~~-~~~~~wsp 113 (347)
T 2gop_A 79 NEEKKVSEIWVADLETLSSK--------------------------------------------KILEAKN-IRSLEWNE 113 (347)
T ss_dssp ETTTTEEEEEEEETTTTEEE--------------------------------------------EEEEESE-EEEEEECT
T ss_pred ccCCCcceEEEEECCCCceE--------------------------------------------EEEcCCC-ccceeECC
Confidence 3 33 777777766221 0111223 88899999
Q ss_pred CCCEEEEEeCC---------------------------CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEc
Q 041325 221 DGSLLYSTSWD---------------------------RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGS 273 (450)
Q Consensus 221 ~~~~l~~~~~d---------------------------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 273 (450)
+|+.|+.++.+ ..|.+||+.+++.+..+.. . .+..+.|+|++ +++++.
T Consensus 114 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~--~-~~~~~~~spdg--~~~~~~ 188 (347)
T 2gop_A 114 DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK--P-RFSSGIWHRDK--IVVNVP 188 (347)
T ss_dssp TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE--E-TTCEEEEETTE--EEEEEE
T ss_pred CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC--C-CcccccCCCCe--EEEEEe
Confidence 99988887632 5799999998887566652 3 78899999744 666665
Q ss_pred CCC-------cEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC--------CcEEEEEcCCCce
Q 041325 274 ADT-------KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD--------RSILVWERDQGNY 338 (450)
Q Consensus 274 ~dg-------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d--------g~i~vwd~~~~~~ 338 (450)
.++ ...+|.+.+++ ...+..+ ..+..+ +|||++|+.++.+ ..|.+|| +++.
T Consensus 189 ~~~~~~~~~~~~~l~~~d~~~---------~~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~ 254 (347)
T 2gop_A 189 HREIIPQYFKFWDIYIWEDGK---------EEKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV 254 (347)
T ss_dssp CCCSSCCSSCCEEEEEEETTE---------EEEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE
T ss_pred cccccccccccccEEEeCCCc---------eEEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce
Confidence 442 44555544322 1112222 344444 9999988877754 3688888 4432
Q ss_pred eeeCCCCCCceeeeccccCCccceEE-EEEeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEe
Q 041325 339 IVDGDDDSGHMVLKGALRGHTKAILC-LAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVV 417 (450)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 417 (450)
. .....+...+.. +.|+..++++++.++.+++| +.++ +. ..+..+...|.+++|++
T Consensus 255 ~-------------~l~~~~~~~~~~~~~~sdg~~~~~~~~~~~~l~-~~~g--------~~-~~~~~~~~~v~~~~~s~ 311 (347)
T 2gop_A 255 M-------------GILDEVDRGVGQAKIKDGKVYFTLFEEGSVNLY-IWDG--------EI-KPIAKGRHWIMGFDVDE 311 (347)
T ss_dssp E-------------ESSTTCCSEEEEEEEETTEEEEEEEETTEEEEE-EESS--------SE-EEEECSSSEEEEEEESS
T ss_pred E-------------eccccCCcccCCccEEcCcEEEEEecCCcEEEE-EcCC--------ce-EEEecCCCeEEeeeeeC
Confidence 2 233445566775 77872288889999999999 8742 22 23334577899999998
Q ss_pred cCCCCCCCCCCCCceEEEEEcccCCcE-EEEEe
Q 041325 418 DSDYSNRNSDHSSTSFLVYSGSLDCEI-KIWQI 449 (450)
Q Consensus 418 ~~~~~~~~~~~~~~~~~l~s~~~Dg~i-~iw~l 449 (450)
. ++++++.++.. .||.+
T Consensus 312 --~-------------~~~~~~~~~~~~~l~~~ 329 (347)
T 2gop_A 312 --I-------------VVYLKETATRLRELFTW 329 (347)
T ss_dssp --S-------------EEEEEECSSSCCEEEEE
T ss_pred --c-------------EEEEEcCCCChHHheEe
Confidence 5 77777777765 78865
No 170
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.71 E-value=9.4e-16 Score=138.16 Aligned_cols=252 Identities=12% Similarity=0.083 Sum_probs=154.1
Q ss_pred CCcceEEEEE--eCCEEEEeeCCCcEEEecCC-CCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe----EEEEe--
Q 041325 74 NSSYIPSLAI--AGKLLYGGSSNGEIRAWNRD-PNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK----LFSAH-- 144 (450)
Q Consensus 74 h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~----l~s~~-- 144 (450)
+...+..+++ ||++|++++.+ .|.+|++. +++...... ...+ +.+..++|+|++ ++++.
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~----------~~~~-g~~~~~~~spdg~~l~~~~~~~~ 105 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEAS----------HPIG-GHPRANDADTNTRAIFLLAAKQP 105 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEE----------EECC-SSGGGGCTTSCCEEEEEEECSST
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeE----------eecC-CCCccEEECCCCCEEEEEEecCC
Confidence 4456788888 79999999887 99999987 665433211 1111 124457777765 23442
Q ss_pred -----------CCCeEEEEEcCC-CceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCc
Q 041325 145 -----------QDHKIRVWKIDN-NTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDT 212 (450)
Q Consensus 145 -----------~dg~i~iw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (450)
.+|.+.+|+++. ++... .+..+. ..+...
T Consensus 106 ~~~~~~~~~~~~~g~v~v~~~~~~g~~~~-------------~~~~~~--------------------------~~~~~~ 146 (365)
T 1jof_A 106 PYAVYANPFYKFAGYGNVFSVSETGKLEK-------------NVQNYE--------------------------YQENTG 146 (365)
T ss_dssp TCCEEEEEESSSCCEEEEEEECTTCCEEE-------------EEEEEE--------------------------CCTTCC
T ss_pred cceeccceeecCCceEEEEccCCCCcCcc-------------eEeeEE--------------------------eCCCCc
Confidence 689999999974 32100 000000 014457
Q ss_pred eEEEEEccCCCEEEEEeC-CCcEEEEecC-CCeEE--EEeec-ccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc--
Q 041325 213 VSALALSSDGSLLYSTSW-DRTFKIWRTS-DFRCL--ESVKN-AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR-- 285 (450)
Q Consensus 213 v~~~~~~~~~~~l~~~~~-dg~i~iwd~~-~~~~~--~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-- 285 (450)
+.+++|+|+|++++++.. ++.|.+||+. +++.. ..+.. .+...+..++|+|+++.++++...++.|.+|++..
T Consensus 147 ~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~ 226 (365)
T 1jof_A 147 IHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPAT 226 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred ceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCC
Confidence 899999999998887764 6799999998 66543 22321 13567899999986553344444578999998653
Q ss_pred hhhhccccchhhhhH----hhccc------ceEEEE-EcCCCCEEEEeeCCC------cEEEEEcC-CCceeeeCCCCCC
Q 041325 286 AALQVNKKHSLVQTL----EKHKS------AVTALA-LSTDGTVLYSGACDR------SILVWERD-QGNYIVDGDDDSG 347 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~----~~~~~------~i~~l~-~~~~~~~l~~g~~dg------~i~vwd~~-~~~~~~~~~~~~~ 347 (450)
++... ....+..+ .++.. .+..++ |+|||++|+++..+. .|.+|++. +++...
T Consensus 227 g~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~------- 297 (365)
T 1jof_A 227 HMPVY--THHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEK------- 297 (365)
T ss_dssp CCEEE--EEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEE-------
T ss_pred CcEEE--ccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEE-------
Confidence 32100 00001111 12222 578999 999999988776432 89999996 444220
Q ss_pred ceeeeccccCCccceEEEEEe-----CCeEEEEeCC-CeEEEeeCCC
Q 041325 348 HMVLKGALRGHTKAILCLAVV-----SNLLFSGSSD-NTIRIWRRSS 388 (450)
Q Consensus 348 ~~~~~~~~~~~~~~v~~~~~~-----~~~l~s~~~d-g~v~iwd~~~ 388 (450)
.......+...+..++++ +++|++++.+ +.|.+|++..
T Consensus 298 ---~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~ 341 (365)
T 1jof_A 298 ---QLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKD 341 (365)
T ss_dssp ---EEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEET
T ss_pred ---eeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEch
Confidence 000111122223344444 5688888764 8999999875
No 171
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.71 E-value=8.4e-15 Score=129.82 Aligned_cols=251 Identities=10% Similarity=0.100 Sum_probs=170.8
Q ss_pred CcceEEEEE--eCCEEEEeeCC------------------------CcEEEecCCCCCceeeeecCCCCcceeEEecCCC
Q 041325 75 SSYIPSLAI--AGKLLYGGSSN------------------------GEIRAWNRDPNNYVNITSTDVGDHANVVATGNGD 128 (450)
Q Consensus 75 ~~~v~~~~~--d~~~l~tgs~d------------------------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 128 (450)
-+.+.++++ +|+++++...+ +.|.+||..+++...... .++-.
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-----------~~~~~ 91 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSG-----------KNLFY 91 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEEC-----------TTTCS
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccC-----------CCccC
Confidence 456899999 68899888877 479999998887654311 13445
Q ss_pred ceEEEEEeCCe--EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeee
Q 041325 129 AVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTW 206 (450)
Q Consensus 129 ~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (450)
....+++.+++ +++...++.|++|+.+.... .+..+..... ...-
T Consensus 92 ~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~---------------~~~~~~~~~~------------------~g~~ 138 (329)
T 3fvz_A 92 LPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEG---------------PLLILGRSMQ------------------PGSD 138 (329)
T ss_dssp SEEEEEECTTSCEEEEETTTTEEEEECTTCSSC---------------CSEEESBTTB------------------CCCS
T ss_pred CceEEEECCCCCEEEEECCCCEEEEEeCCCCeE---------------EEEEecccCC------------------CCCC
Confidence 78899999776 56666789999999865410 0111100000 0000
Q ss_pred ecCCCceEEEEEcc-CCCEEEEEe-CCCcEEEEecCCCeEEEEeec---------ccccceEEEEEeecCCcEEEEEcCC
Q 041325 207 VHHVDTVSALALSS-DGSLLYSTS-WDRTFKIWRTSDFRCLESVKN---------AHDDAINAIVVSKSNDGFVYTGSAD 275 (450)
Q Consensus 207 ~~~~~~v~~~~~~~-~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~---------~~~~~v~~~~~~~~~~~~l~~~~~d 275 (450)
..+......++++| ++.++++.+ .++.|++|| .+++.+..+.. .+......++++|+.+.++++...+
T Consensus 139 ~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~ 217 (329)
T 3fvz_A 139 QNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADREN 217 (329)
T ss_dssp TTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTT
T ss_pred ccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCC
Confidence 12444688999999 888888876 699999999 56777666641 1223488999998656678888889
Q ss_pred CcEEEEeCcchhhhccccchhhhhH--hhcccceEEEEEcC------CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCC
Q 041325 276 TKIKVWKKLRAALQVNKKHSLVQTL--EKHKSAVTALALST------DGTVLYSGACDRSILVWERDQGNYIVDGDDDSG 347 (450)
Q Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~i~~l~~~~------~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~ 347 (450)
+.|++||..+++ .+..+ ..+...+..++++| +|+..++...+..|++||..+++.+..+.
T Consensus 218 ~~I~~~~~~~G~--------~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~---- 285 (329)
T 3fvz_A 218 GRIQCFKTDTKE--------FVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFK---- 285 (329)
T ss_dssp TEEEEEETTTCC--------EEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEEC----
T ss_pred CEEEEEECCCCc--------EEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEc----
Confidence 999999987554 22222 23456778899998 44433334445689999999887663211
Q ss_pred ceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCC
Q 041325 348 HMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 348 ~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~ 388 (450)
....+.....+++++++ ++++...++.|++|++..
T Consensus 286 ------~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 286 ------PVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp ------CSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred ------CCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 11345566788999854 778888899999999764
No 172
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.69 E-value=6.9e-14 Score=121.41 Aligned_cols=242 Identities=11% Similarity=0.203 Sum_probs=160.0
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe-CCe-EEEEeC--C
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL-GDK-LFSAHQ--D 146 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~-l~s~~~--d 146 (450)
+|-..+.++++ +++++++...++.|.+||.+ ++.......... ..+|...+..+++. ++. ++.+.. +
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~------~~~~~~~p~~i~~~~~~g~l~v~~~~~~ 99 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGK------RDSQLLYPNRVAVVRNSGDIIVTERSPT 99 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSS------STTCBSSEEEEEEETTTTEEEEEECGGG
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCC------CcccccCceEEEEEcCCCeEEEEcCCCC
Confidence 45567899999 58888888889999999987 443332111000 01344578899994 444 555553 8
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLY 226 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 226 (450)
+.|++||.+.. . +..+.. .+...+.++++++++++++
T Consensus 100 ~~i~~~d~~g~-~----------------~~~~~~--------------------------~~~~~~~~i~~~~~g~l~v 136 (286)
T 1q7f_A 100 HQIQIYNQYGQ-F----------------VRKFGA--------------------------TILQHPRGVTVDNKGRIIV 136 (286)
T ss_dssp CEEEEECTTSC-E----------------EEEECT--------------------------TTCSCEEEEEECTTSCEEE
T ss_pred CEEEEECCCCc-E----------------EEEecC--------------------------ccCCCceEEEEeCCCCEEE
Confidence 89999994332 1 111100 1334678999999999888
Q ss_pred EEeCCCcEEEEecCCCeEEEEeec-ccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHh--hc
Q 041325 227 STSWDRTFKIWRTSDFRCLESVKN-AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLE--KH 303 (450)
Q Consensus 227 ~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~ 303 (450)
+...++.|.+||.. ++.+..+.. .+...+..++++++ ..++++...++.|++||..... +..+. ++
T Consensus 137 ~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~-g~l~v~~~~~~~i~~~~~~g~~---------~~~~~~~g~ 205 (286)
T 1q7f_A 137 VECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDK-QEIFISDNRAHCVKVFNYEGQY---------LRQIGGEGI 205 (286)
T ss_dssp EETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSS-SEEEEEEGGGTEEEEEETTCCE---------EEEESCTTT
T ss_pred EECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCC-CCEEEEECCCCEEEEEcCCCCE---------EEEEccCCc
Confidence 87788999999964 555555542 23456899999974 4467777788999999974322 11221 22
Q ss_pred ccceEEEEEcCCCCEEEEeeCCC-cEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCe
Q 041325 304 KSAVTALALSTDGTVLYSGACDR-SILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNT 380 (450)
Q Consensus 304 ~~~i~~l~~~~~~~~l~~g~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~ 380 (450)
...+..++++++|+++++...++ .|.+||.. ++.+.. .........+.+++++++ ++++ +.|+.
T Consensus 206 ~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~-----------~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~ 272 (286)
T 1q7f_A 206 TNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISA-----------LESKVKHAQCFDVALMDDGSVVLA-SKDYR 272 (286)
T ss_dssp SCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEE-----------EEESSCCSCEEEEEEETTTEEEEE-ETTTE
T ss_pred cCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEE-----------EcccCCCCcceeEEECCCCcEEEE-CCCCe
Confidence 35688999999999888887776 99999954 443310 111112234678888754 5555 67999
Q ss_pred EEEeeCCC
Q 041325 381 IRIWRRSS 388 (450)
Q Consensus 381 v~iwd~~~ 388 (450)
|++|++..
T Consensus 273 v~v~~~~~ 280 (286)
T 1q7f_A 273 LYIYRYVQ 280 (286)
T ss_dssp EEEEECSC
T ss_pred EEEEEccc
Confidence 99999864
No 173
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.68 E-value=9.3e-15 Score=144.17 Aligned_cols=314 Identities=12% Similarity=0.109 Sum_probs=181.3
Q ss_pred ccCCCccCCCCCccccccccccCCCCCCCCCCCCCCCCCccccCCCCCccceeeeEEeecCCCcc-----eEEEEE--eC
Q 041325 13 RNKEPKFQPSSNHLQSELSNASLSSQPSLPSVPSLAPSSSFRKQAPAASEHQCSATLKVKGNSSY-----IPSLAI--AG 85 (450)
Q Consensus 13 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~h~~~-----v~~~~~--d~ 85 (450)
+..++.|+|++..+.+. +..+ ..+...++++...+. +|... ...++| ||
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i--------------------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~Spdg 73 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNI--------------------LVFNAEYGNSSVFLE--NSTFDEFGHSINDYSISPDG 73 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEE--------------------EEEETTTCCEEEEEC--TTTTTTCCSCCCEEEECTTS
T ss_pred cccccEECCCCcEEEEc--CCcE--------------------EEEECCCCceEEEEe--chhhhhhcccccceEECCCC
Confidence 35577888887655553 2222 233444556666666 66643 223566 89
Q ss_pred CEEEEeeCC---------CcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEc
Q 041325 86 KLLYGGSSN---------GEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKI 154 (450)
Q Consensus 86 ~~l~tgs~d---------g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~ 154 (450)
++|+.++.+ +.+.+||+.+++... +..|...+...+|+||+ |+.+ .|+.|++|++
T Consensus 74 ~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~-------------l~~~~~~~~~~~~SPdG~~la~~-~~~~i~~~~~ 139 (740)
T 4a5s_A 74 QFILLEYNYVKQWRHSYTASYDIYDLNKRQLIT-------------EERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIE 139 (740)
T ss_dssp SEEEEEEEEEECSSSCEEEEEEEEETTTTEECC-------------SSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESS
T ss_pred CEEEEEECCeeeEEEccceEEEEEECCCCcEEE-------------cccCCCcceeeEECCCCCEEEEE-ECCeEEEEEC
Confidence 999999876 567799999987543 24566789999999988 6555 5789999999
Q ss_pred CCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCC---------CceEEEEEccCCCEE
Q 041325 155 DNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHV---------DTVSALALSSDGSLL 225 (450)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~v~~~~~~~~~~~l 225 (450)
.++........+.. ...+.++. +....+.|+|||+.|
T Consensus 140 ~~~~~~~lt~~g~~----------------------------------~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~l 185 (740)
T 4a5s_A 140 PNLPSYRITWTGKE----------------------------------DIIYNGITDWVYEEEVFSAYSALWWSPNGTFL 185 (740)
T ss_dssp TTSCCEECCSCCBT----------------------------------TTEEESBCCHHHHHHTSSSSBCEEECTTSSEE
T ss_pred CCCceEEEcCCCCc----------------------------------cceecCcccccccchhcCCCcceEECCCCCEE
Confidence 88743221111100 00011121 123457788888877
Q ss_pred EEEeCC------------------------------------CcEEEEecCC---Ce--EEEEeec-----ccccceEEE
Q 041325 226 YSTSWD------------------------------------RTFKIWRTSD---FR--CLESVKN-----AHDDAINAI 259 (450)
Q Consensus 226 ~~~~~d------------------------------------g~i~iwd~~~---~~--~~~~~~~-----~~~~~v~~~ 259 (450)
+.++.| ..|.+||+.+ ++ ....+.. .+...+..+
T Consensus 186 a~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 265 (740)
T 4a5s_A 186 AYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDV 265 (740)
T ss_dssp EEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEE
T ss_pred EEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEE
Confidence 776422 1588899988 73 2223331 266789999
Q ss_pred EEeecCCcEEEEEc----CCCcEEEEeCcchhhhccccchhhhhH--hhcccceE-----EEEEcCCCCEEE-EeeC-C-
Q 041325 260 VVSKSNDGFVYTGS----ADTKIKVWKKLRAALQVNKKHSLVQTL--EKHKSAVT-----ALALSTDGTVLY-SGAC-D- 325 (450)
Q Consensus 260 ~~~~~~~~~l~~~~----~dg~i~vwd~~~~~~~~~~~~~~~~~~--~~~~~~i~-----~l~~~~~~~~l~-~g~~-d- 325 (450)
+|+|++. .++... .+..|.+||+.+++.. ........+ ..+...+. ..+|+|||+.|+ ..+. +
T Consensus 266 ~wspdg~-~~~~~~~r~~~~~~i~~~d~~tg~~~--~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G 342 (740)
T 4a5s_A 266 TWATQER-ISLQWLRRIQNYSVMDICDYDESSGR--WNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEG 342 (740)
T ss_dssp EEEETTE-EEEEEEESSTTEEEEEEEEEETTTTE--EEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTS
T ss_pred EEeCCCe-EEEEEeCCCCCEEEEEEEECCCCccc--cceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCC
Confidence 9999654 444332 2347999998776400 000011211 23444443 688999999877 5553 3
Q ss_pred -CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEE-EEeCCeEE-EEeC----CCeEEEeeCCCCccccCCCce
Q 041325 326 -RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL-AVVSNLLF-SGSS----DNTIRIWRRSSSVTDHQKGYS 398 (450)
Q Consensus 326 -g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~l~-s~~~----dg~v~iwd~~~~~~~~~~~~~ 398 (450)
..|++||..+++.. .+......+..+ .++++.|+ ++.. .+...||.+... ...
T Consensus 343 ~~~l~~~~~~~~~~~--------------~lT~g~~~v~~~~~~d~~~i~f~~~~~~~~~~~~~ly~v~~~------g~~ 402 (740)
T 4a5s_A 343 YRHICYFQIDKKDCT--------------FITKGTWEVIGIEALTSDYLYYISNEYKGMPGGRNLYKIQLI------DYT 402 (740)
T ss_dssp CEEEEEEETTCSSCE--------------ESCCSSSCEEEEEEECSSEEEEEESCGGGCTTCBEEEEEETT------EEE
T ss_pred ceEEEEEECCCCceE--------------ecccCCEEEEEEEEEeCCEEEEEEecCCCCCceeEEEEEECC------CCC
Confidence 36888888765432 222223344443 36666444 4443 234455544321 011
Q ss_pred eEEEec----CCCcceEEEEEEecCCC
Q 041325 399 CLAVLE----GHRRPVKCLTAVVDSDY 421 (450)
Q Consensus 399 ~~~~~~----~h~~~v~~l~~~~~~~~ 421 (450)
....+. +....+....|+|++++
T Consensus 403 ~~~~lt~~~~~~~~~~~~~~~S~dg~~ 429 (740)
T 4a5s_A 403 KVTCLSCELNPERCQYYSVSFSKEAKY 429 (740)
T ss_dssp EEEESSTTTSTTTBCBEEEEECTTSSE
T ss_pred cceeeccccCCCCCceEEEEECCCCCE
Confidence 111232 23456889999999983
No 174
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.67 E-value=2.1e-12 Score=112.77 Aligned_cols=282 Identities=11% Similarity=0.070 Sum_probs=182.1
Q ss_pred eEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEE
Q 041325 67 ATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSA 143 (450)
Q Consensus 67 ~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~ 143 (450)
..+.+..+...+.++++ +|+++++...++.|.+||.. ++..... ...+...+.++++.+++ ++.+
T Consensus 6 ~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~-----------~~~~~~~~~~i~~~~~g~l~v~ 73 (299)
T 2z2n_A 6 QELNLTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYP-----------LPTPDAKVMCLTISSDGEVWFT 73 (299)
T ss_dssp EEEECCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEE-----------CSSTTCCEEEEEECTTSCEEEE
T ss_pred EEEcCCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEec-----------CCcccCceeeEEECCCCCEEEe
Confidence 34444467788999999 57777776667899999988 5543321 11234678899998766 5544
Q ss_pred e-CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCC
Q 041325 144 H-QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDG 222 (450)
Q Consensus 144 ~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 222 (450)
. .++.|..|+.+.. .. .. .++ .....+.++++++++
T Consensus 74 ~~~~~~i~~~~~~g~-~~--------------~~-~~~---------------------------~~~~~~~~i~~~~~g 110 (299)
T 2z2n_A 74 ENAANKIGRITKKGI-IK--------------EY-TLP---------------------------NPDSAPYGITEGPNG 110 (299)
T ss_dssp ETTTTEEEEECTTSC-EE--------------EE-ECS---------------------------STTCCEEEEEECTTS
T ss_pred CCCCCeEEEECCCCc-EE--------------EE-eCC---------------------------CcCCCceeeEECCCC
Confidence 4 4788999987622 10 00 000 123367889999999
Q ss_pred CEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhh
Q 041325 223 SLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEK 302 (450)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 302 (450)
.++++...++.|..||. +++............+..+++.+++ .++++...++.|..||. +++... .....
T Consensus 111 ~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g-~l~v~~~~~~~i~~~~~-~g~~~~-------~~~~~ 180 (299)
T 2z2n_A 111 DIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDN-ALWFTENQNNAIGRITE-SGDITE-------FKIPT 180 (299)
T ss_dssp CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTS-CEEEEETTTTEEEEECT-TCCEEE-------EECSS
T ss_pred CEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCC-CEEEEeCCCCEEEEEcC-CCcEEE-------eeCCC
Confidence 88887777889999998 5554433222344568899998643 46666666789999998 443110 01112
Q ss_pred cccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCe
Q 041325 303 HKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNT 380 (450)
Q Consensus 303 ~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~ 380 (450)
....+..++++++|++.++...++.|.+||. +++... .....+...+.+++++++ +.++...++.
T Consensus 181 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~------------~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~ 247 (299)
T 2z2n_A 181 PASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE------------FKIPTPNARPHAITAGAGIDLWFTEWGANK 247 (299)
T ss_dssp TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE------------EECSSTTCCEEEEEECSTTCEEEEETTTTE
T ss_pred CCCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE------------EECCCCCCCceeEEECCCCCEEEeccCCce
Confidence 3456789999999997777767889999998 654321 112234456788888743 4455446789
Q ss_pred EEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 381 IRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 381 v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
|..||.. + ......+..+...+.++++ +++. ++++.+ .+.|..++.
T Consensus 248 i~~~d~~-g-------~~~~~~~~~~~~~~~~i~~-~~g~-------------l~v~~~-~~~l~~~~~ 293 (299)
T 2z2n_A 248 IGRLTSN-N-------IIEEYPIQIKSAEPHGICF-DGET-------------IWFAME-CDKIGKLTL 293 (299)
T ss_dssp EEEEETT-T-------EEEEEECSSSSCCEEEEEE-CSSC-------------EEEEET-TTEEEEEEE
T ss_pred EEEECCC-C-------ceEEEeCCCCCCccceEEe-cCCC-------------EEEEec-CCcEEEEEc
Confidence 9999974 2 1111223345567899999 8877 666555 455666654
No 175
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.66 E-value=1.5e-14 Score=141.13 Aligned_cols=230 Identities=14% Similarity=0.143 Sum_probs=147.5
Q ss_pred eCCE-EEEeeC-CCcEEEecCC--C-CCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCC----------
Q 041325 84 AGKL-LYGGSS-NGEIRAWNRD--P-NNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQD---------- 146 (450)
Q Consensus 84 d~~~-l~tgs~-dg~v~vw~~~--~-~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d---------- 146 (450)
||++ |+.++. +..|.+|++. + ++........ ...|...+..++|+||+ |+.++.|
T Consensus 89 Dg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~--------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~ 160 (662)
T 3azo_A 89 AGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVS--------AVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR 160 (662)
T ss_dssp SSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCC--------CSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred CCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCc--------cCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence 5887 665543 6778888876 3 4432220000 00166788999999887 7777766
Q ss_pred CeEEEEEcCC------CceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeee-cCCCceEEEEEc
Q 041325 147 HKIRVWKIDN------NTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWV-HHVDTVSALALS 219 (450)
Q Consensus 147 g~i~iw~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~ 219 (450)
..|++||+.+ +... .+. .+...+..++|+
T Consensus 161 ~~i~~~~~~~~~~~~~~~~~--------------------------------------------~l~~~~~~~~~~~~~S 196 (662)
T 3azo_A 161 RFLAAVPLDGSAAADRSAVR--------------------------------------------ELSDDAHRFVTGPRLS 196 (662)
T ss_dssp EEEEEEETTSTTTTCGGGSE--------------------------------------------ESSCSCSSEECCCEEC
T ss_pred eEEEEEECCCCccccCCcee--------------------------------------------EEEecCCCcccCceEC
Confidence 5899999887 3210 111 233467778999
Q ss_pred cCCCEEEEEeCC--------CcEEEEecC-CC--eEEEEeecccccceEEEEEeecCCcEEEEEcCCC--cEEEEeCcch
Q 041325 220 SDGSLLYSTSWD--------RTFKIWRTS-DF--RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADT--KIKVWKKLRA 286 (450)
Q Consensus 220 ~~~~~l~~~~~d--------g~i~iwd~~-~~--~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--~i~vwd~~~~ 286 (450)
|||++|+.++.+ ..|.+||+. ++ .....+...+...+..+.|+|++. +++++..++ .|.+||+.++
T Consensus 197 pDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~-l~~~~~~~~~~~l~~~~~~~~ 275 (662)
T 3azo_A 197 PDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGS-LIVATDRTGWWNLHRVDPATG 275 (662)
T ss_dssp TTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSC-EEEEECTTSSCEEEEECTTTC
T ss_pred CCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCe-EEEEECCCCCeEEEEEECCCC
Confidence 999999987754 379999998 56 233444424567899999999776 888888888 5666665444
Q ss_pred hhhccccchhhhhHhhccc--------ceEEEEEcCCCCEEEEeeCCCcEEEE--EcCCCceeeeCCCCCCceeeecccc
Q 041325 287 ALQVNKKHSLVQTLEKHKS--------AVTALALSTDGTVLYSGACDRSILVW--ERDQGNYIVDGDDDSGHMVLKGALR 356 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~--------~i~~l~~~~~~~~l~~g~~dg~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~ 356 (450)
+. ......+.. .+..++|+|++++++++.. +.+++| |+.+++ + ..+.
T Consensus 276 ~~--------~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-~-------------~~l~ 332 (662)
T 3azo_A 276 AA--------TQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-L-------------VDAA 332 (662)
T ss_dssp CE--------EESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-E-------------EECC
T ss_pred ce--------eecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-E-------------EEec
Confidence 31 111111111 1467899999999999998 999999 544443 2 3445
Q ss_pred CCccceEEE-EEeCC--eEEEEeCCCe--EEEeeCCCC
Q 041325 357 GHTKAILCL-AVVSN--LLFSGSSDNT--IRIWRRSSS 389 (450)
Q Consensus 357 ~~~~~v~~~-~~~~~--~l~s~~~dg~--v~iwd~~~~ 389 (450)
.|...+..+ +++++ ++++++.+.. |.+||+.++
T Consensus 333 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 333 GPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred CCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 566677777 77777 3344455544 555565543
No 176
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.66 E-value=1.2e-13 Score=123.83 Aligned_cols=283 Identities=11% Similarity=0.088 Sum_probs=176.1
Q ss_pred CCccceeeeEEeecCCCcceEEEEE--eCCEEEEee----------CCCcEEEecCCCCCceeeeecCCCCcceeEEecC
Q 041325 59 AASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGS----------SNGEIRAWNRDPNNYVNITSTDVGDHANVVATGN 126 (450)
Q Consensus 59 ~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs----------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h 126 (450)
...+++.+.++. .+..+ .+++ |+++|+++. .++.|.+||..+.+.......... ...+
T Consensus 37 D~~t~~~~~~i~--~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~------~~~~ 106 (361)
T 2oiz_A 37 DYTNGKFLGMVP--TAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPK------RVQG 106 (361)
T ss_dssp ETTTCCEEEEEE--CCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTT------BCCB
T ss_pred ECCCCeEEEEec--CCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCcc------cccc
Confidence 445566777777 66665 7888 899999886 367899999988876655321110 0013
Q ss_pred CCceEEEEEeCCe--EEEEeC--CCeEEEEEcCCCceeEEeccCcccccceeeeee-ccCCCcceeEeeecCceEEEeec
Q 041325 127 GDAVKSLVVLGDK--LFSAHQ--DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIAT-LPTLNDRFTKCFLANNYVQVRRH 201 (450)
Q Consensus 127 ~~~v~~l~~~~~~--l~s~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 201 (450)
......+++++++ |+++.. +++|.+||+.+.+ .+.. ++
T Consensus 107 g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~----------------~~~~~i~--------------------- 149 (361)
T 2oiz_A 107 LNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGD----------------YVEDVTA--------------------- 149 (361)
T ss_dssp CCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTE----------------EEEEEGG---------------------
T ss_pred CCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCc----------------EEEEEec---------------------
Confidence 3467789999877 666653 6899999999883 2222 22
Q ss_pred ceeeeecCCCceEEEEEccCC-CEEEEEeCCCcEEEEecCC-CeEEEEee-----cccccceEEEEEeecCCcEEEEEcC
Q 041325 202 KKCTWVHHVDTVSALALSSDG-SLLYSTSWDRTFKIWRTSD-FRCLESVK-----NAHDDAINAIVVSKSNDGFVYTGSA 274 (450)
Q Consensus 202 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~-~~~~~~~~-----~~~~~~v~~~~~~~~~~~~l~~~~~ 274 (450)
.. ....+.+.|++ ..+++.+.||.+.+|+... ++...... .....++ .+.+.+++. .++..+.
T Consensus 150 -------~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~~~~~~~ 219 (361)
T 2oiz_A 150 -------AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKD-KAHFVSY 219 (361)
T ss_dssp -------GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSS-EEEEEBT
T ss_pred -------CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCC-EEEEEeC
Confidence 11 11224556654 6777888899999998865 54442211 0111221 223345343 4555567
Q ss_pred CCcEEEEeCcchhhhccccchhhh--hHh--hcccceEEEEEcCCCCEEEEeeC-----------CCcEEEEEcCCCcee
Q 041325 275 DTKIKVWKKLRAALQVNKKHSLVQ--TLE--KHKSAVTALALSTDGTVLYSGAC-----------DRSILVWERDQGNYI 339 (450)
Q Consensus 275 dg~i~vwd~~~~~~~~~~~~~~~~--~~~--~~~~~i~~l~~~~~~~~l~~g~~-----------dg~i~vwd~~~~~~~ 339 (450)
++.|.++|+............... ... ........++|+|+++.++++.. ++.|.+||+.+++.+
T Consensus 220 ~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v 299 (361)
T 2oiz_A 220 YGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRV 299 (361)
T ss_dssp TSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEE
T ss_pred CCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEE
Confidence 889999998644311101000000 000 01122223789999888877643 348999999998765
Q ss_pred eeCCCCCCceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEe
Q 041325 340 VDGDDDSGHMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVV 417 (450)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 417 (450)
..+..+. +.++++++ ++|++++. +.|.+||..++ ..+.+..+..+......++++|
T Consensus 300 -------------~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~------~l~~~~~i~~~G~~P~~~~~~p 357 (361)
T 2oiz_A 300 -------------ARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQP------EPKLLRTIEGAAEASLQVQFHP 357 (361)
T ss_dssp -------------EEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSS------SCEEEEEETTSCSSEEEEEECC
T ss_pred -------------EEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCC------cceeeEEeccCCCCcEEEEecC
Confidence 3444444 78888874 58887776 99999998863 1266777666777788999999
Q ss_pred cCC
Q 041325 418 DSD 420 (450)
Q Consensus 418 ~~~ 420 (450)
++.
T Consensus 358 ~G~ 360 (361)
T 2oiz_A 358 VGG 360 (361)
T ss_dssp CSC
T ss_pred CCC
Confidence 875
No 177
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.65 E-value=2.9e-14 Score=129.63 Aligned_cols=241 Identities=9% Similarity=-0.031 Sum_probs=148.8
Q ss_pred EecCCCceEE-----EEEeCCe--EEEEeC-CCe--EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeec
Q 041325 123 ATGNGDAVKS-----LVVLGDK--LFSAHQ-DHK--IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLA 192 (450)
Q Consensus 123 ~~~h~~~v~~-----l~~~~~~--l~s~~~-dg~--i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (450)
+..|...... .+|+||+ |+.++. +|. |.+||+.+++.. ...
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~----------------~lt------------- 76 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVAT----------------QLT------------- 76 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEE----------------ECC-------------
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceE----------------Eee-------------
Confidence 3445444444 7899877 776666 674 888888877321 111
Q ss_pred CceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEE--eecCCcEEE
Q 041325 193 NNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVV--SKSNDGFVY 270 (450)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~l~ 270 (450)
.++...+....|+|+++.|+.++.++.|.+||+.+++...... .+...+....+ ++++. +++
T Consensus 77 --------------~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~dg~-~l~ 140 (388)
T 3pe7_A 77 --------------EGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQ-VPAEWVGYGTWVANSDCT-KLV 140 (388)
T ss_dssp --------------CSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CCTTEEEEEEEEECTTSS-EEE
T ss_pred --------------eCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeee-chhhcccccceeECCCCC-eec
Confidence 1233344467899999999999999999999999988766555 34444444444 44333 443
Q ss_pred E----------------------EcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcC-CCCEEEEeeCC--
Q 041325 271 T----------------------GSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST-DGTVLYSGACD-- 325 (450)
Q Consensus 271 ~----------------------~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~g~~d-- 325 (450)
. ...+..|.+||+.+++ ...+..+...+..++|+| ||+.|+....+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~---------~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~ 211 (388)
T 3pe7_A 141 GIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGE---------STVILQENQWLGHPIYRPYDDSTVAFCHEGPH 211 (388)
T ss_dssp EEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCC---------EEEEEEESSCEEEEEEETTEEEEEEEEECSCT
T ss_pred cccccCcccccccccchhhhhhccCCcceEEEEECCCCc---------eEEeecCCccccccEECCCCCCEEEEEEecCC
Confidence 2 2245789999987765 122334556789999999 99998877753
Q ss_pred ----CcEEEEEcCCCceeeeCCCCCCceeeeccccCCc--cceEEEEEeCC--eEEEEeC-CC----eEEEeeCCCCccc
Q 041325 326 ----RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT--KAILCLAVVSN--LLFSGSS-DN----TIRIWRRSSSVTD 392 (450)
Q Consensus 326 ----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~--~l~s~~~-dg----~v~iwd~~~~~~~ 392 (450)
..|.++|...++.. .+..+. ..+....|+++ .|+..+. ++ .|++||+.++.
T Consensus 212 ~~~~~~l~~~d~~~~~~~--------------~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~-- 275 (388)
T 3pe7_A 212 DLVDARMWLINEDGTNMR--------------KVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLE-- 275 (388)
T ss_dssp TTSSCSEEEEETTSCCCE--------------ESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCC--
T ss_pred CCCcceEEEEeCCCCceE--------------EeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCc--
Confidence 37888887654321 222232 35677888754 5544332 22 39999998752
Q ss_pred cCCCceeEEEecCCCcc---eEEEEEEecCCCCCCCCCCCCceEEEEEc---------ccCCcEEEEEeC
Q 041325 393 HQKGYSCLAVLEGHRRP---VKCLTAVVDSDYSNRNSDHSSTSFLVYSG---------SLDCEIKIWQIR 450 (450)
Q Consensus 393 ~~~~~~~~~~~~~h~~~---v~~l~~~~~~~~~~~~~~~~~~~~~l~s~---------~~Dg~i~iw~l~ 450 (450)
.+.+..+.++... ...+.|+|+++ .|+.. ..+..|++||++
T Consensus 276 ----~~~l~~~~~~~~~~~~~~~~~~spdg~-------------~l~~~~~~~~~~~~~~~~~i~~~d~~ 328 (388)
T 3pe7_A 276 ----NRQLTSMPACSHLMSNYDGSLMVGDGS-------------DAPVDVQDDSGYKIENDPFLYVFNMK 328 (388)
T ss_dssp ----EEEEEEECCEEEEEECTTSSEEEEEEC-------------CC------------CCCCEEEEEETT
T ss_pred ----eEEEEcCCCceeeeecCCCCeEccCCC-------------cceeEeeeccccccCCCCEEEEEecc
Confidence 2333344331111 12237999998 45432 456789999863
No 178
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.64 E-value=7.8e-14 Score=123.99 Aligned_cols=262 Identities=13% Similarity=0.089 Sum_probs=163.5
Q ss_pred cceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-E-EEEeCCCeEEE
Q 041325 76 SYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-L-FSAHQDHKIRV 151 (450)
Q Consensus 76 ~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l-~s~~~dg~i~i 151 (450)
..|.+++| ++..++..+.++.++.|. ++.... +..+...+.+++|++++ | +++..++.|.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~------------~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~ 70 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT---AEPWLE------------ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFK 70 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEEE------------EESSCCCEEEEEECTTSCEEEEETTTCEEEE
T ss_pred cccceeeecCCccceeEEeecccCcccc---cceeEE------------EeccCccccCcEECCCCCEEEEECCCCEEEE
Confidence 34666677 455566667788888882 222221 44566678999999776 4 46778899999
Q ss_pred EEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCC
Q 041325 152 WKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWD 231 (450)
Q Consensus 152 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 231 (450)
||.++++.... ...+...+.+++++++++++++...+
T Consensus 71 ~d~~~~~~~~~-------------------------------------------~~~~~~~~~~i~~~~dg~l~v~~~~~ 107 (333)
T 2dg1_A 71 INPETKEIKRP-------------------------------------------FVSHKANPAAIKIHKDGRLFVCYLGD 107 (333)
T ss_dssp ECTTTCCEEEE-------------------------------------------EECSSSSEEEEEECTTSCEEEEECTT
T ss_pred EeCCCCcEEEE-------------------------------------------eeCCCCCcceEEECCCCcEEEEeCCC
Confidence 99987632110 00234578999999999988877666
Q ss_pred ----CcEEEEecCCCeEEEEee-cccccceEEEEEeecCCcEEEEEcC------CCcEEEEeCcchhhhccccchhhhhH
Q 041325 232 ----RTFKIWRTSDFRCLESVK-NAHDDAINAIVVSKSNDGFVYTGSA------DTKIKVWKKLRAALQVNKKHSLVQTL 300 (450)
Q Consensus 232 ----g~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~~~~~~~~~~~~~~ 300 (450)
+.|.+||..+++....+. ......+..+++.|++ .++++... .+.|..+|...++. ..+
T Consensus 108 ~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v~~~~~~~~~~~~~l~~~~~~~~~~---------~~~ 177 (333)
T 2dg1_A 108 FKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKG-GFYFTDFRGYSTNPLGGVYYVSPDFRTV---------TPI 177 (333)
T ss_dssp SSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTS-CEEEEECCCBTTBCCEEEEEECTTSCCE---------EEE
T ss_pred CCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCC-CEEEEeccccccCCCceEEEEeCCCCEE---------EEe
Confidence 689999998776543332 1234578999999744 35555443 35566666543321 111
Q ss_pred hhcccceEEEEEcCCCCEEEE-eeCCCcEEEEEcCC-CceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEe
Q 041325 301 EKHKSAVTALALSTDGTVLYS-GACDRSILVWERDQ-GNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGS 376 (450)
Q Consensus 301 ~~~~~~i~~l~~~~~~~~l~~-g~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~ 376 (450)
......+..++|+|+++.|+. .+.++.|.+||+.+ ++.+.... ........++ ..+..++++ +++.++..
T Consensus 178 ~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~-----~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~ 251 (333)
T 2dg1_A 178 IQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFG-----ATIPYYFTGH-EGPDSCCIDSDDNLYVAMY 251 (333)
T ss_dssp EEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEE-----EEEEEECCSS-SEEEEEEEBTTCCEEEEEE
T ss_pred ecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCccccc-----ceEEEecCCC-CCCCceEECCCCCEEEEEc
Confidence 123345788999999986654 45678999999863 32211000 0000111222 356778887 44666666
Q ss_pred CCCeEEEeeCCCCccccCCCceeEEEecCCCc------ceEEEEEEecCC
Q 041325 377 SDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRR------PVKCLTAVVDSD 420 (450)
Q Consensus 377 ~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~------~v~~l~~~~~~~ 420 (450)
.++.|.+||... +.+..+..+.. .+.+++|++++.
T Consensus 252 ~~~~v~~~d~~g---------~~~~~~~~~~~~~g~~~~~~~~~~~~dg~ 292 (333)
T 2dg1_A 252 GQGRVLVFNKRG---------YPIGQILIPGRDEGHMLRSTHPQFIPGTN 292 (333)
T ss_dssp TTTEEEEECTTS---------CEEEEEECTTGGGTCSCBCCEEEECTTSC
T ss_pred CCCEEEEECCCC---------CEEEEEEcCCCccccccCcceEEECCCCC
Confidence 788999999853 33444443332 689999998876
No 179
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.64 E-value=7.5e-13 Score=117.58 Aligned_cols=250 Identities=12% Similarity=0.077 Sum_probs=156.4
Q ss_pred ceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-
Q 041325 63 HQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK- 139 (450)
Q Consensus 63 ~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~- 139 (450)
.+....+. ++...+.+++| ++++++++..++.|.+||.++++.... ...+...+.++++++++
T Consensus 34 ~~~~~~~~--~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~------------~~~~~~~~~~i~~~~dg~ 99 (333)
T 2dg1_A 34 AEPWLEIS--KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRP------------FVSHKANPAAIKIHKDGR 99 (333)
T ss_dssp CEEEEEEE--SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEE------------EECSSSSEEEEEECTTSC
T ss_pred cceeEEEe--ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEE------------eeCCCCCcceEEECCCCc
Confidence 45566666 78888899999 688888888899999999988775543 22455689999999776
Q ss_pred EEEEe-CC----CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceE
Q 041325 140 LFSAH-QD----HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVS 214 (450)
Q Consensus 140 l~s~~-~d----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 214 (450)
++.++ .+ +.|.+||.+++..... +.. ..+...+.
T Consensus 100 l~v~~~~~~~~~~~i~~~d~~~~~~~~~----------------~~~-------------------------~~~~~~~~ 138 (333)
T 2dg1_A 100 LFVCYLGDFKSTGGIFAATENGDNLQDI----------------IED-------------------------LSTAYCID 138 (333)
T ss_dssp EEEEECTTSSSCCEEEEECTTSCSCEEE----------------ECS-------------------------SSSCCCEE
T ss_pred EEEEeCCCCCCCceEEEEeCCCCEEEEE----------------Ecc-------------------------CccCCccc
Confidence 54444 44 5899999887632100 000 01234688
Q ss_pred EEEEccCCCEEEEEeC------CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcch-h
Q 041325 215 ALALSSDGSLLYSTSW------DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA-A 287 (450)
Q Consensus 215 ~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~-~ 287 (450)
+++++|+|+++++... .+.|..+|..+++..... .....+..++++|++..++++...++.|.+||+... .
T Consensus 139 ~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~ 216 (333)
T 2dg1_A 139 DMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPII--QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGV 216 (333)
T ss_dssp EEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEE--EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSS
T ss_pred ceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEee--cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCc
Confidence 9999999987776653 356777776654443322 234457889999855545566677889999998532 1
Q ss_pred hhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEE
Q 041325 288 LQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV 367 (450)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 367 (450)
............+.++ ..+..++++++|+++++...++.|.+||.. ++.+..... .....+|...+.+++|
T Consensus 217 ~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~-------~~~~~g~~~~~~~~~~ 287 (333)
T 2dg1_A 217 TIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILI-------PGRDEGHMLRSTHPQF 287 (333)
T ss_dssp SEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEEC-------TTGGGTCSCBCCEEEE
T ss_pred CcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEc-------CCCccccccCcceEEE
Confidence 0000000000011111 367889999999988888788999999984 443311000 0000122235778888
Q ss_pred eC--CeEEEEeCC
Q 041325 368 VS--NLLFSGSSD 378 (450)
Q Consensus 368 ~~--~~l~s~~~d 378 (450)
++ +.|+.++.+
T Consensus 288 ~~dg~~L~v~~~~ 300 (333)
T 2dg1_A 288 IPGTNQLIICSND 300 (333)
T ss_dssp CTTSCEEEEEEEC
T ss_pred CCCCCEEEEEeCc
Confidence 74 356555544
No 180
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.60 E-value=3e-13 Score=119.65 Aligned_cols=263 Identities=11% Similarity=0.033 Sum_probs=169.9
Q ss_pred CCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEEEcCCCceeEEeccCccccc
Q 041325 93 SNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNK 171 (450)
Q Consensus 93 ~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~ 171 (450)
.++.|.++|.++++.......... -.........+.+.++. +++...++.|.+||..+.+.
T Consensus 15 ~~~~l~~~d~~t~~~~~~i~~~~n------~~~lg~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~------------ 76 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEVFYRAN------GFKLGDVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKE------------ 76 (328)
T ss_dssp CCBEEEEEETTTTEEECSHHHHHH------SSCCBSCEEEEEEETTEEEEEEGGGTEEEEEETTTCCE------------
T ss_pred CCceEEEEECCCCEEhhhhHhhhc------CcccCccceEEEEECCEEEEEEcCCCEEEEEECcccEE------------
Confidence 489999999998876543210000 00122356778888887 44455579999999998843
Q ss_pred ceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecc
Q 041325 172 YYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNA 251 (450)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 251 (450)
+..++ .......++++++++++++...++.|.+||..+++....+..+
T Consensus 77 ----~~~i~----------------------------~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g 124 (328)
T 3dsm_A 77 ----VGRIT----------------------------GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECP 124 (328)
T ss_dssp ----EEEEE----------------------------CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECT
T ss_pred ----EEEcC----------------------------CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcC
Confidence 11111 2235788999888855454448999999999999988777632
Q ss_pred cc----cceEEEEEeecCCcEEEEEc-CCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC-
Q 041325 252 HD----DAINAIVVSKSNDGFVYTGS-ADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD- 325 (450)
Q Consensus 252 ~~----~~v~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d- 325 (450)
.. .....+++. ++.++++.. .++.|.++|..+++ ....+.. ......++++|+|++++++..+
T Consensus 125 ~~~~~~~~p~~i~~~--~~~lyv~~~~~~~~v~viD~~t~~--------~~~~i~~-g~~p~~i~~~~dG~l~v~~~~~~ 193 (328)
T 3dsm_A 125 DMDMESGSTEQMVQY--GKYVYVNCWSYQNRILKIDTETDK--------VVDELTI-GIQPTSLVMDKYNKMWTITDGGY 193 (328)
T ss_dssp TCCTTTCBCCCEEEE--TTEEEEEECTTCCEEEEEETTTTE--------EEEEEEC-SSCBCCCEECTTSEEEEEBCCBC
T ss_pred CccccCCCcceEEEE--CCEEEEEcCCCCCEEEEEECCCCe--------EEEEEEc-CCCccceEEcCCCCEEEEECCCc
Confidence 21 145667773 554555544 48899999998765 2222221 2345778999999977776655
Q ss_pred ---------CcEEEEEcCCCceeeeCCCCCCceeeeccccC-CccceEEEEEeC--CeEEEEeCCCeEEEeeCCCCcccc
Q 041325 326 ---------RSILVWERDQGNYIVDGDDDSGHMVLKGALRG-HTKAILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTDH 393 (450)
Q Consensus 326 ---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~ 393 (450)
+.|.++|..+++... .+.. .......+++++ ++|+++.. .|.+||..++....
T Consensus 194 ~~~~~~~~~~~v~~id~~t~~v~~-------------~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~ 258 (328)
T 3dsm_A 194 EGSPYGYEAPSLYRIDAETFTVEK-------------QFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPV 258 (328)
T ss_dssp TTCSSCBCCCEEEEEETTTTEEEE-------------EEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCS
T ss_pred cCCccccCCceEEEEECCCCeEEE-------------EEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceee
Confidence 789999998876441 1111 113567888884 46666554 89999998752210
Q ss_pred CCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEc----ccCCcEEEEEe
Q 041325 394 QKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSG----SLDCEIKIWQI 449 (450)
Q Consensus 394 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~----~~Dg~i~iw~l 449 (450)
...+..+......++++|++.. ++++. ..++.|.+||.
T Consensus 259 ------~~~~~~~~~~p~gi~vdp~~g~------------lyva~~~~y~~~~~V~v~d~ 300 (328)
T 3dsm_A 259 ------RPFLEFRDTKYYGLTVNPNNGE------------VYVADAIDYQQQGIVYRYSP 300 (328)
T ss_dssp ------SCSBCCCSSCEEEEEECTTTCC------------EEEEECTTSSSEEEEEEECT
T ss_pred ------eeeecCCCCceEEEEEcCCCCe------------EEEEcccccccCCEEEEECC
Confidence 0111112456889999985442 66666 67889999985
No 181
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.59 E-value=3.9e-12 Score=119.83 Aligned_cols=279 Identities=12% Similarity=0.149 Sum_probs=184.3
Q ss_pred eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcC--CCce
Q 041325 84 AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKID--NNTS 159 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~--~~~~ 159 (450)
.+.++++...++.|.++|..+++.+.... ....+..+.|++++ +++++.|+.|.+||+. +.+.
T Consensus 166 ~~~~~V~~~~~~~V~viD~~t~~v~~~i~-------------~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~ 232 (567)
T 1qks_A 166 ENLFSVTLRDAGQIALIDGSTYEIKTVLD-------------TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT 232 (567)
T ss_dssp GGEEEEEETTTTEEEEEETTTCCEEEEEE-------------CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE
T ss_pred CceEEEEeCCCCeEEEEECCCCeEEEEEe-------------CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE
Confidence 35677778889999999999998776521 22356789999877 8888999999999995 4421
Q ss_pred eEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEc----cCCCEEEEEe-CCCcE
Q 041325 160 AYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALS----SDGSLLYSTS-WDRTF 234 (450)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~l~~~~-~dg~i 234 (450)
+..++ .......++|+ |+|++++++. .++.|
T Consensus 233 ----------------v~~i~----------------------------~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v 268 (567)
T 1qks_A 233 ----------------VAEIK----------------------------IGSEARSIETSKMEGWEDKYAIAGAYWPPQY 268 (567)
T ss_dssp ----------------EEEEE----------------------------CCSEEEEEEECCSTTCTTTEEEEEEEETTEE
T ss_pred ----------------eEEEe----------------------------cCCCCceeEEccccCCCCCEEEEEEccCCeE
Confidence 11111 11235789999 6999888776 46999
Q ss_pred EEEecCCCeEEEEeeccc----------ccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcc
Q 041325 235 KIWRTSDFRCLESVKNAH----------DDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHK 304 (450)
Q Consensus 235 ~iwd~~~~~~~~~~~~~~----------~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 304 (450)
.++|..+.+.+..+.... ...+..+..++....+++....+|.|.++|....+. . .+..+ ...
T Consensus 269 ~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~-----~-~v~~i-~~~ 341 (567)
T 1qks_A 269 VIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN-----L-KTTEI-SAE 341 (567)
T ss_dssp EEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE-----E-EEEEE-ECC
T ss_pred EEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc-----c-eeeee-ecc
Confidence 999999999888775221 125778888876666777788889999999865320 0 01111 123
Q ss_pred cceEEEEEcCCCCEEEEee-CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC---eEEEEe-CCC
Q 041325 305 SAVTALALSTDGTVLYSGA-CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN---LLFSGS-SDN 379 (450)
Q Consensus 305 ~~i~~l~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~l~s~~-~dg 379 (450)
.....+.|+|+|++++++. .++.|.++|+.+++.+.... ......|.+.-..+ ++++ ..+++. .++
T Consensus 342 ~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~--------vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~ 412 (567)
T 1qks_A 342 RFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIED--------TGGQTPHPGRGANF-VHPTFGPVWATSHMGDD 412 (567)
T ss_dssp SSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE--------CSSSSBCCTTCEEE-EETTTEEEEEEEBSSSS
T ss_pred ccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEe--------ccCcCCCCccceee-ECCCCCcEEEeCCCCCC
Confidence 4466789999999987765 57899999999987552110 00112343322222 3432 444443 568
Q ss_pred eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEccc-------CCcEEEEEe
Q 041325 380 TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSL-------DCEIKIWQI 449 (450)
Q Consensus 380 ~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~-------Dg~i~iw~l 449 (450)
.|.++|..+.... ...++.+..+......-..+..+|+++ +|..... .++|.++|+
T Consensus 413 ~Vsvid~~~~~~~-~~~~kvv~~i~~~g~g~~~i~~~p~~~-------------~l~v~~~~~~~~~~~~~v~v~d~ 475 (567)
T 1qks_A 413 SVALIGTDPEGHP-DNAWKILDSFPALGGGSLFIKTHPNSQ-------------YLYVDATLNPEAEISGSVAVFDI 475 (567)
T ss_dssp EEEEEECCTTTCT-TTBTSEEEEEECSCSCCCCEECCTTCS-------------EEEEECTTCSSHHHHTCEEEEEG
T ss_pred eEEEecCCCCCCc-cccCEEEEEEecCCCCCEEEEeCCCCC-------------eEEEecCCCCCcccCceEEEEEC
Confidence 9999998863111 122567777765544434577889988 5665441 458888886
No 182
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.57 E-value=2.8e-13 Score=132.61 Aligned_cols=281 Identities=8% Similarity=0.024 Sum_probs=167.2
Q ss_pred eEEEEEeCCEEEEeeCCC---cEEEe--cCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EE-----EEeC
Q 041325 78 IPSLAIAGKLLYGGSSNG---EIRAW--NRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LF-----SAHQ 145 (450)
Q Consensus 78 v~~~~~d~~~l~tgs~dg---~v~vw--~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~-----s~~~ 145 (450)
+.....+|++++-...++ .-.+| +...++......... ...+|...+..++|+||+ |+ .|+.
T Consensus 72 ~~~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~------~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~ 145 (695)
T 2bkl_A 72 VSTPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNG------WSKDGTVSLGTWAVSWDGKKVAFAQKPNAAD 145 (695)
T ss_dssp ECCCEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGG------SSSSSCEEEEEEEECTTSSEEEEEEEETTCS
T ss_pred CCCCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHH------hccCCCEEEEEEEECCCCCEEEEEECCCCCc
Confidence 333345888887666543 23444 443443222211100 012455678999999988 44 3344
Q ss_pred CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCc--eEEEEEccCCC
Q 041325 146 DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDT--VSALALSSDGS 223 (450)
Q Consensus 146 dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~~~~~~~~~~ 223 (450)
+..|++||+.+++... . .+... ...++|+|||+
T Consensus 146 ~~~i~v~dl~tg~~~~---------------~------------------------------~~~~~~~~~~~~wspDg~ 180 (695)
T 2bkl_A 146 EAVLHVIDVDSGEWSK---------------V------------------------------DVIEGGKYATPKWTPDSK 180 (695)
T ss_dssp CCEEEEEETTTCCBCS---------------S------------------------------CCBSCCTTCCCEECTTSS
T ss_pred eEEEEEEECCCCCCcC---------------C------------------------------cccCcccccceEEecCCC
Confidence 5789999999883210 0 01111 25789999999
Q ss_pred EEEEEeCCCc-------------EEEEecCCCeE--EEEee-cccccceEEEEEeecCCcEEEEEcCCC----cEEEEeC
Q 041325 224 LLYSTSWDRT-------------FKIWRTSDFRC--LESVK-NAHDDAINAIVVSKSNDGFVYTGSADT----KIKVWKK 283 (450)
Q Consensus 224 ~l~~~~~dg~-------------i~iwd~~~~~~--~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~vwd~ 283 (450)
.|+.++.|.. |++|++.++.. ...+. ..+...+..+.|+|++. +|+.++.++ .|.+|+.
T Consensus 181 ~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~l~~~~~ 259 (695)
T 2bkl_A 181 GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGK-YLFVYILRGWSENDVYWKRP 259 (695)
T ss_dssp EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSC-CEEEEEEETTTEEEEEEECT
T ss_pred EEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCC-EEEEEEeCCCCceEEEEEcC
Confidence 9999988776 99999987752 12222 13445788999999765 454444444 6666654
Q ss_pred cchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEee---CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC-c
Q 041325 284 LRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA---CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH-T 359 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 359 (450)
.+++ ...+..+...+....+ ++|++++... .++.|.+||+.+++.- . ....+..+ .
T Consensus 260 ~~~~---------~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~--------~--~~~l~~~~~~ 319 (695)
T 2bkl_A 260 GEKD---------FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARA--------S--WKEIVPEDSS 319 (695)
T ss_dssp TCSS---------CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGG--------G--CEEEECCCSS
T ss_pred CCCc---------eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCcc--------C--CeEEecCCCC
Confidence 3322 2223334445555666 5666444433 2578999999765310 0 01112222 3
Q ss_pred cceEEEEEeCC-eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCC-CcceEEEEEEecCCCCCCCCCCCCceEEEE-
Q 041325 360 KAILCLAVVSN-LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGH-RRPVKCLTAVVDSDYSNRNSDHSSTSFLVY- 436 (450)
Q Consensus 360 ~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~- 436 (450)
..+..+++.++ ++++...|+..++|.+... ......+..+ ...+..+.++++++ .++
T Consensus 320 ~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~-------g~~~~~l~~~~~~~v~~~~~s~d~~-------------~l~~ 379 (695)
T 2bkl_A 320 ASLLSVSIVGGHLSLEYLKDATSEVRVATLK-------GKPVRTVQLPGVGAASNLMGLEDLD-------------DAYY 379 (695)
T ss_dssp CEEEEEEEETTEEEEEEEETTEEEEEEEETT-------CCEEEECCCSSSSEECCCBSCTTCS-------------EEEE
T ss_pred CeEEEEEEECCEEEEEEEECCEEEEEEEeCC-------CCeeEEecCCCCeEEEEeecCCCCC-------------EEEE
Confidence 45677888755 7788888999888876521 1234445444 56777888888776 455
Q ss_pred ---EcccCCcEEEEEeC
Q 041325 437 ---SGSLDCEIKIWQIR 450 (450)
Q Consensus 437 ---s~~~Dg~i~iw~l~ 450 (450)
+....++|++||++
T Consensus 380 ~~ss~~~P~~v~~~d~~ 396 (695)
T 2bkl_A 380 VFTSFTTPRQIYKTSVS 396 (695)
T ss_dssp EEEETTEEEEEEEEETT
T ss_pred EEcCCCCCCEEEEEECC
Confidence 44456889999863
No 183
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.57 E-value=1.8e-12 Score=113.06 Aligned_cols=229 Identities=11% Similarity=0.113 Sum_probs=152.4
Q ss_pred EecCCCceEEEEEeCCe---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEe
Q 041325 123 ATGNGDAVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVR 199 (450)
Q Consensus 123 ~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (450)
+..+.....+++|++++ ++++..++.|..|+..++ ..
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~~--------------------------------------- 62 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-LS--------------------------------------- 62 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-EE---------------------------------------
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-eE---------------------------------------
Confidence 44556678899999764 777788999999998865 21
Q ss_pred ecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeec---ccccceEEEEEeecCCcEEEE----E
Q 041325 200 RHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKN---AHDDAINAIVVSKSNDGFVYT----G 272 (450)
Q Consensus 200 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~----~ 272 (450)
.+..+...+.+++++++|+++++...++.|.+||..+++....... .....+..+++.|++ .++++ |
T Consensus 63 -----~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G-~l~vtd~~~g 136 (296)
T 3e5z_A 63 -----PEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDG-SLWFSDPTYG 136 (296)
T ss_dssp -----EEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTS-CEEEEECSHH
T ss_pred -----EEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCC-CEEEECCccc
Confidence 1112445688999999999887777778999999988775443321 112346789998744 35555 3
Q ss_pred c-------------CCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcC-CCce
Q 041325 273 S-------------ADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERD-QGNY 338 (450)
Q Consensus 273 ~-------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~-~~~~ 338 (450)
+ ..+.|..++.. ++ ...+..+......++|+|+++.+++.+.++.|++|++. +++.
T Consensus 137 ~~~~~~~~~~~~~~~~~~l~~~~~~-g~---------~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~ 206 (296)
T 3e5z_A 137 IDKPEEGYGGEMELPGRWVFRLAPD-GT---------LSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGET 206 (296)
T ss_dssp HHCGGGSSCCCCCSSSCEEEEECTT-SC---------EEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCE
T ss_pred cccccccccccccCCCcEEEEECCC-CC---------EEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcC
Confidence 2 13456666543 22 11222344567899999999998777788999999987 4432
Q ss_pred -eeeCCCCCCceeeeccccCCccceEEEEEeCC-eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEE
Q 041325 339 -IVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAV 416 (450)
Q Consensus 339 -~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 416 (450)
. ....+..+...+.+++++++ .|..+. ++.|.+||... +.+..+..+.. +++++|.
T Consensus 207 ~~-----------~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~g---------~~~~~~~~~~~-~~~~~f~ 264 (296)
T 3e5z_A 207 EY-----------QGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPDG---------DELGRVLTPQT-TSNLCFG 264 (296)
T ss_dssp EE-----------EEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTTS---------CEEEEEECSSC-CCEEEEE
T ss_pred cC-----------CCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCCC---------CEEEEEECCCC-ceeEEEE
Confidence 1 00111223445567788743 344444 88999999863 45666766777 9999995
Q ss_pred -ecCCCCCCCCCCCCceEEEEEcccCC
Q 041325 417 -VDSDYSNRNSDHSSTSFLVYSGSLDC 442 (450)
Q Consensus 417 -~~~~~~~~~~~~~~~~~~l~s~~~Dg 442 (450)
++++ .|+.++.++
T Consensus 265 ~~d~~-------------~L~v~t~~~ 278 (296)
T 3e5z_A 265 GPEGR-------------TLYMTVSTE 278 (296)
T ss_dssp STTSC-------------EEEEEETTE
T ss_pred CCCCC-------------EEEEEcCCe
Confidence 7777 777777765
No 184
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.57 E-value=1.7e-12 Score=127.56 Aligned_cols=242 Identities=11% Similarity=0.042 Sum_probs=152.6
Q ss_pred cCCCceEEEEEeCCe--EEEEeCC-C----eEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEE
Q 041325 125 GNGDAVKSLVVLGDK--LFSAHQD-H----KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQ 197 (450)
Q Consensus 125 ~h~~~v~~l~~~~~~--l~s~~~d-g----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (450)
+|...+..++|+||+ |+.+..+ | .|++||+.+++....
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~----------------------------------- 166 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD----------------------------------- 166 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-----------------------------------
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-----------------------------------
Confidence 344568899999987 5544433 3 899999998842110
Q ss_pred EeecceeeeecCCCceEEEEEccCCCEEEEEeCCCc----------------EEEEecCCCeEE--EEeec-ccccceEE
Q 041325 198 VRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRT----------------FKIWRTSDFRCL--ESVKN-AHDDAINA 258 (450)
Q Consensus 198 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~----------------i~iwd~~~~~~~--~~~~~-~~~~~v~~ 258 (450)
.. .+ ..+..++|+|||+.|+.++.++. |++|++.+++.. ..+.. .+...+..
T Consensus 167 -------~~-~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~ 237 (710)
T 2xdw_A 167 -------VL-ER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGG 237 (710)
T ss_dssp -------EE-EE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred -------cc-cC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEE
Confidence 00 01 12567899999999999887766 999999876521 22221 23455788
Q ss_pred EEEeecCCcEEEEEcC----CCcEEEEeCcc------hhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC---
Q 041325 259 IVVSKSNDGFVYTGSA----DTKIKVWKKLR------AALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD--- 325 (450)
Q Consensus 259 ~~~~~~~~~~l~~~~~----dg~i~vwd~~~------~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d--- 325 (450)
+.|+|++..++++... +..|.+||+.+ +.. ....+..+...+.. .|+|+|+.|+..+..
T Consensus 238 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~-------~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~ 309 (710)
T 2xdw_A 238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGIL-------KWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSP 309 (710)
T ss_dssp EEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSC-------CCEEEECSSSSCEE-EEEEETTEEEEEECTTCT
T ss_pred EEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCcc-------ceEEeeCCCCcEEE-EEeccCCEEEEEECCCCC
Confidence 9999966644443321 56899999865 320 12223334444444 488899888776653
Q ss_pred -CcEEEEEcCCCceeeeCCCCCCceeeeccccCCcc--ceEEEEEe-CC-eEEEEeCCCe--EEEeeCCCCccccCCCce
Q 041325 326 -RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK--AILCLAVV-SN-LLFSGSSDNT--IRIWRRSSSVTDHQKGYS 398 (450)
Q Consensus 326 -g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~-~~-~l~s~~~dg~--v~iwd~~~~~~~~~~~~~ 398 (450)
+.|.+||+.++..- ....+..|.. .+..+.|. ++ ++++...|+. |.+|++.++ +
T Consensus 310 ~~~l~~~d~~~~~~~-----------~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g--------~ 370 (710)
T 2xdw_A 310 NYRLINIDFTDPEES-----------KWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATG--------A 370 (710)
T ss_dssp TCEEEEEETTSCCGG-----------GCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTC--------C
T ss_pred CCEEEEEeCCCCCcc-----------cceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCC--------C
Confidence 36999998865310 0012223322 57778887 44 7777888885 555666443 3
Q ss_pred eEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEc---ccCCcEEEEEe
Q 041325 399 CLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSG---SLDCEIKIWQI 449 (450)
Q Consensus 399 ~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~---~~Dg~i~iw~l 449 (450)
.+..+..+...+..+.+++++.. ++++. ...+.|++||+
T Consensus 371 ~~~~l~~~~~~v~~~~~s~d~~~------------l~~~~ss~~~P~~i~~~d~ 412 (710)
T 2xdw_A 371 LLKIFPLEVGSVVGYSGQKKDTE------------IFYQFTSFLSPGIIYHCDL 412 (710)
T ss_dssp EEEEECCCSSEEEEEECCTTCSE------------EEEEEECSSCCCEEEEEET
T ss_pred EEEecCCCCceEEEEecCCCCCE------------EEEEEeCCCCCCEEEEEEC
Confidence 45666667788899999988762 33332 24578998886
No 185
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.56 E-value=1.8e-12 Score=111.45 Aligned_cols=235 Identities=11% Similarity=0.082 Sum_probs=155.7
Q ss_pred ceEEEEE--eCCEEE-EeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEE
Q 041325 77 YIPSLAI--AGKLLY-GGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVW 152 (450)
Q Consensus 77 ~v~~~~~--d~~~l~-tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw 152 (450)
...++++ +|++++ +.+.++.|.+|+..+...... ...+...+.++++.+++ ++.+..++.|.+|
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~------------~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~ 92 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL------------PFNGLYQPQGLAVDGAGTVYVTDFNNRVVTL 92 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EEC------------CCCSCCSCCCEEECTTCCEEEEETTTEEEEE
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceE------------eeCCcCCcceeEECCCCCEEEEcCCCEEEEE
Confidence 6778888 577777 547789999999766543221 11233467889998765 6655558899999
Q ss_pred EcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCC
Q 041325 153 KIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDR 232 (450)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 232 (450)
|........ +. ......+..++++++++++++...++
T Consensus 93 d~~~~~~~~-----------------~~--------------------------~~~~~~p~~i~~~~~g~l~v~~~~~~ 129 (270)
T 1rwi_B 93 AAGSNNQTV-----------------LP--------------------------FDGLNYPEGLAVDTQGAVYVADRGNN 129 (270)
T ss_dssp CTTCSCCEE-----------------CC--------------------------CCSCSSEEEEEECTTCCEEEEEGGGT
T ss_pred eCCCceEee-----------------ee--------------------------cCCcCCCcceEECCCCCEEEEECCCC
Confidence 987652110 00 01223578999999999877777788
Q ss_pred cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEE
Q 041325 233 TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALAL 312 (450)
Q Consensus 233 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 312 (450)
.|.+|+..+........ .....+..+++.+++ .++++...++.|.+||...... ..........+..+++
T Consensus 130 ~i~~~~~~~~~~~~~~~-~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~~~~--------~~~~~~~~~~p~~i~~ 199 (270)
T 1rwi_B 130 RVVKLAAGSKTQTVLPF-TGLNDPDGVAVDNSG-NVYVTDTDNNRVVKLEAESNNQ--------VVLPFTDITAPWGIAV 199 (270)
T ss_dssp EEEEECTTCCSCEECCC-CSCCSCCCEEECTTC-CEEEEEGGGTEEEEECTTTCCE--------EECCCSSCCSEEEEEE
T ss_pred EEEEEECCCceeEeecc-ccCCCceeEEEeCCC-CEEEEECCCCEEEEEecCCCce--------EeecccCCCCceEEEE
Confidence 99999876554332222 233467889998744 3667777788999999865431 1111122256789999
Q ss_pred cCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCC
Q 041325 313 STDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 313 ~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~ 389 (450)
+++|+++++...++.|.+|+....... .....+...+.+++++ ++++++...++.|+++++...
T Consensus 200 d~~g~l~v~~~~~~~v~~~~~~~~~~~-------------~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 200 DEAGTVYVTEHNTNQVVKLLAGSTTST-------------VLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp CTTCCEEEEETTTSCEEEECTTCSCCE-------------ECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred CCCCCEEEEECCCCcEEEEcCCCCcce-------------eeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 999987777777889999998754322 1111223567888887 457788888999999998863
No 186
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.56 E-value=8.2e-11 Score=102.59 Aligned_cols=283 Identities=12% Similarity=0.087 Sum_probs=181.5
Q ss_pred eeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEE
Q 041325 66 SATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFS 142 (450)
Q Consensus 66 ~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s 142 (450)
+..+.+......+.++++ +|++.++...++.|.+||.. ++.... . ...+...+.++++.+++ ++.
T Consensus 10 ~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~-~----------~~~~~~~~~~i~~~~~g~l~v 77 (300)
T 2qc5_A 10 LEEFNLSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEF-E----------VPTPDAKVMCLIVSSLGDIWF 77 (300)
T ss_dssp EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE-E----------CSSTTCCEEEEEECTTSCEEE
T ss_pred EEEEecCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEE-E----------CCCCCCcceeEEECCCCCEEE
Confidence 444554456678899999 57877777778999999987 554332 1 11233578899998766 555
Q ss_pred Ee-CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC
Q 041325 143 AH-QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD 221 (450)
Q Consensus 143 ~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 221 (450)
+. .++.|..||.. ++.... ..+ .....+.++++.++
T Consensus 78 ~~~~~~~v~~~d~~-g~~~~~---------------~~~---------------------------~~~~~~~~i~~~~~ 114 (300)
T 2qc5_A 78 TENGANKIGKLSKK-GGFTEY---------------PLP---------------------------QPDSGPYGITEGLN 114 (300)
T ss_dssp EETTTTEEEEECTT-SCEEEE---------------ECS---------------------------STTCCEEEEEECST
T ss_pred EecCCCeEEEECCC-CCeEEe---------------cCC---------------------------CCCCCCccceECCC
Confidence 54 47889999877 421100 000 12246789999999
Q ss_pred CCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHh
Q 041325 222 GSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLE 301 (450)
Q Consensus 222 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 301 (450)
++++++...++.|..||.. ++............+..+++.+++. ++++...++.|..||. +++.. . ....
T Consensus 115 g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~------~-~~~~ 184 (300)
T 2qc5_A 115 GDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITN-TGKLE------E-YPLP 184 (300)
T ss_dssp TCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEE------E-EECS
T ss_pred CCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCC-EEEEecCCCeEEEECC-CCcEE------E-eeCC
Confidence 9988877768899999987 5544322212445788999987443 6666666788999997 33311 0 1111
Q ss_pred hcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCC
Q 041325 302 KHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDN 379 (450)
Q Consensus 302 ~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg 379 (450)
.....+..++++++|++.++....+.|.+||. +++... .....+...+.+++++++ +.++...++
T Consensus 185 ~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~------------~~~~~~~~~~~~i~~d~~g~l~v~~~~~~ 251 (300)
T 2qc5_A 185 TNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISE------------YDIPTPNARPHAITAGKNSEIWFTEWGAN 251 (300)
T ss_dssp STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE------------EECSSTTCCEEEEEECSTTCEEEEETTTT
T ss_pred CCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEE------------EECCCCCCCceEEEECCCCCEEEeccCCC
Confidence 23356889999999987777666788999998 444321 112233456788888743 555555578
Q ss_pred eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 380 TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 380 ~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
.|..||.... .....+......+.++++.+++. ++++.. . .|..++.
T Consensus 252 ~i~~~~~~g~--------~~~~~~~~~~~~~~~i~~~~~g~-------------l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 252 QIGRITNDNT--------IQEYQLQTENAEPHGITFGKDGS-------------VWFALK-C-KIGKLNL 298 (300)
T ss_dssp EEEEECTTSC--------EEEEECCSTTCCCCCEEECTTSC-------------EEEECS-S-EEEEEEE
T ss_pred eEEEECCCCc--------EEEEECCccCCccceeEeCCCCC-------------EEEEcc-C-ceEEeCC
Confidence 9999997421 11122333445688899988887 666655 4 6766664
No 187
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.56 E-value=1.3e-12 Score=112.21 Aligned_cols=233 Identities=8% Similarity=0.039 Sum_probs=153.7
Q ss_pred ceEEEEEeCCe-EEE-E-eCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceee
Q 041325 129 AVKSLVVLGDK-LFS-A-HQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCT 205 (450)
Q Consensus 129 ~v~~l~~~~~~-l~s-~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (450)
...++++.+++ ++. + ..++.|.+|+..+..... ..
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~-----------------~~------------------------- 62 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV-----------------LP------------------------- 62 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE-----------------CC-------------------------
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce-----------------Ee-------------------------
Confidence 67888998766 554 5 677899999876542100 00
Q ss_pred eecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc
Q 041325 206 WVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR 285 (450)
Q Consensus 206 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 285 (450)
..+...+.+++++++++++++.. ++.|.+||...... ..+.......+..+++.+++ .++++...++.|.+|+..+
T Consensus 63 -~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~-~~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~i~~~~~~~ 138 (270)
T 1rwi_B 63 -FNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ-TVLPFDGLNYPEGLAVDTQG-AVYVADRGNNRVVKLAAGS 138 (270)
T ss_dssp -CCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC-EECCCCSCSSEEEEEECTTC-CEEEEEGGGTEEEEECTTC
T ss_pred -eCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE-eeeecCCcCCCcceEECCCC-CEEEEECCCCEEEEEECCC
Confidence 01223567899999998666655 88999999876543 33321233578899998744 3666667788999997543
Q ss_pred hhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEE
Q 041325 286 AALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL 365 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 365 (450)
.. ...........+..++++++|+++++...++.|.+||........ ....+...+.++
T Consensus 139 ~~--------~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~-------------~~~~~~~~p~~i 197 (270)
T 1rwi_B 139 KT--------QTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVV-------------LPFTDITAPWGI 197 (270)
T ss_dssp CS--------CEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEE-------------CCCSSCCSEEEE
T ss_pred ce--------eEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEe-------------ecccCCCCceEE
Confidence 32 111111223457889999999977777778899999988654321 111222557788
Q ss_pred EEeCC--eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCc
Q 041325 366 AVVSN--LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCE 443 (450)
Q Consensus 366 ~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~ 443 (450)
+++++ ++++...++.|.+|+.... ........+...+.++++.+++. ++++...++.
T Consensus 198 ~~d~~g~l~v~~~~~~~v~~~~~~~~--------~~~~~~~~~~~~p~~i~~~~~g~-------------l~v~~~~~~~ 256 (270)
T 1rwi_B 198 AVDEAGTVYVTEHNTNQVVKLLAGST--------TSTVLPFTGLNTPLAVAVDSDRT-------------VYVADRGNDR 256 (270)
T ss_dssp EECTTCCEEEEETTTSCEEEECTTCS--------CCEECCCCSCSCEEEEEECTTCC-------------EEEEEGGGTE
T ss_pred EECCCCCEEEEECCCCcEEEEcCCCC--------cceeeccCCCCCceeEEECCCCC-------------EEEEECCCCE
Confidence 88754 5555566889999998753 11112223345689999999988 8999999999
Q ss_pred EEEEEe
Q 041325 444 IKIWQI 449 (450)
Q Consensus 444 i~iw~l 449 (450)
|+++++
T Consensus 257 v~~~~~ 262 (270)
T 1rwi_B 257 VVKLTS 262 (270)
T ss_dssp EEEECC
T ss_pred EEEEcC
Confidence 999986
No 188
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.56 E-value=1.7e-12 Score=111.33 Aligned_cols=211 Identities=11% Similarity=0.103 Sum_probs=140.4
Q ss_pred CCe-EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCC-CceE
Q 041325 137 GDK-LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHV-DTVS 214 (450)
Q Consensus 137 ~~~-l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~ 214 (450)
|+. |++++.|+.|.+||.++++. +..++ .+. ..+.
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~----------------~w~~~---------------------------~~~~~~~~ 40 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEI----------------VWEYP---------------------------LEKGWECN 40 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEE----------------EEEEE---------------------------CCTTCCCC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeE----------------EEEeC---------------------------CCccCCCc
Confidence 455 88889999999999988843 22221 122 3578
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcC-CCcEEEEeCcchhhhcccc
Q 041325 215 ALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSA-DTKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 215 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~ 293 (450)
++.+.|+|++++ +.++.|..||. +++.+..+.......+.++.+.+++. ++++.+. ++.|..+|. +++... .
T Consensus 41 ~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~-~lv~~~~~~~~v~~vd~-~Gk~l~--~ 113 (276)
T 3no2_A 41 SVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGN-ALVAWCGHPSTILEVNM-KGEVLS--K 113 (276)
T ss_dssp EEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSC-EEEEEESTTEEEEEECT-TSCEEE--E
T ss_pred CeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCC-EEEEecCCCCEEEEEeC-CCCEEE--E
Confidence 899999999888 45788999999 89999988843345788888887444 6666665 777777775 333110 0
Q ss_pred chhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe--CCe
Q 041325 294 HSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV--SNL 371 (450)
Q Consensus 294 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~ 371 (450)
.........+......+++.++|+++++...++.|..||.. ++.+..... . ....++... +++
T Consensus 114 ~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~-------------~-~~~~~~~~~~~g~~ 178 (276)
T 3no2_A 114 TEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKL-------------S-GTPFSSAFLDNGDC 178 (276)
T ss_dssp EEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEEC-------------S-SCCCEEEECTTSCE
T ss_pred EeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEEC-------------C-CCccceeEcCCCCE
Confidence 00000001122244566789999999999999999999998 887632211 1 122333443 568
Q ss_pred EEEEeCCCeEEEeeCCCCccccCCCceeEEEecCC------CcceEEEEEEecCC
Q 041325 372 LFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGH------RRPVKCLTAVVDSD 420 (450)
Q Consensus 372 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h------~~~v~~l~~~~~~~ 420 (450)
+++++.++.|..+|..++ +.+..+..+ ...+..++..+++.
T Consensus 179 ~v~~~~~~~v~~~d~~tG--------~~~w~~~~~~~~~~~l~~~~~~~~~~~G~ 225 (276)
T 3no2_A 179 LVACGDAHCFVQLNLESN--------RIVRRVNANDIEGVQLFFVAQLFPLQNGG 225 (276)
T ss_dssp EEECBTTSEEEEECTTTC--------CEEEEEEGGGSBSCCCSEEEEEEECTTSC
T ss_pred EEEeCCCCeEEEEeCcCC--------cEEEEecCCCCCCccccccccceEcCCCC
Confidence 888888889999998875 444444322 12367777777777
No 189
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.55 E-value=2e-12 Score=112.72 Aligned_cols=243 Identities=12% Similarity=0.110 Sum_probs=158.0
Q ss_pred eeeeEEeecCCCcceEEEEE--eCC-EEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-
Q 041325 64 QCSATLKVKGNSSYIPSLAI--AGK-LLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d~~-~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~- 139 (450)
..+..+. .+.....+++| +++ +++++..++.|..|+..++ ... +..+...+.++++++++
T Consensus 18 ~~~~~l~--~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~------------~~~~~~~~~~l~~~~dg~ 81 (296)
T 3e5z_A 18 AEARRLA--DGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP------------EMHPSHHQNGHCLNKQGH 81 (296)
T ss_dssp CCCEEEE--CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE------------EESSCSSEEEEEECTTCC
T ss_pred CcEEEEe--cCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE------------EECCCCCcceeeECCCCc
Confidence 3445566 67778889999 577 7888889999999998876 222 33566788999999877
Q ss_pred EEEEe-CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEE
Q 041325 140 LFSAH-QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALAL 218 (450)
Q Consensus 140 l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 218 (450)
++.+. .++.|.+||..+++....... .. ......+..+++
T Consensus 82 l~v~~~~~~~i~~~d~~~g~~~~~~~~-------------~~--------------------------~~~~~~~~~i~~ 122 (296)
T 3e5z_A 82 LIACSHGLRRLERQREPGGEWESIADS-------------FE--------------------------GKKLNSPNDVCL 122 (296)
T ss_dssp EEEEETTTTEEEEECSTTCCEEEEECE-------------ET--------------------------TEECCCCCCEEE
T ss_pred EEEEecCCCeEEEEcCCCCcEEEEeec-------------cC--------------------------CCCCCCCCCEEE
Confidence 55444 468999999977632111000 00 001224678999
Q ss_pred ccCCCEEEE----Ee-------------CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEE
Q 041325 219 SSDGSLLYS----TS-------------WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVW 281 (450)
Q Consensus 219 ~~~~~~l~~----~~-------------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw 281 (450)
+|+|+++++ |+ ..+.|..++.. ++. ..+. .+......++|+|++. .+++.+.++.|.+|
T Consensus 123 d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~-~~~~~~~gi~~s~dg~-~lv~~~~~~~i~~~ 198 (296)
T 3e5z_A 123 APDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPI-RDRVKPNGLAFLPSGN-LLVSDTGDNATHRY 198 (296)
T ss_dssp CTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEE-CCCSSEEEEEECTTSC-EEEEETTTTEEEEE
T ss_pred CCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEee-cCCCCCccEEECCCCC-EEEEeCCCCeEEEE
Confidence 999998887 32 13456666655 443 3333 4556778999998666 45888888999999
Q ss_pred eCc-chhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCcc
Q 041325 282 KKL-RAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK 360 (450)
Q Consensus 282 d~~-~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (450)
++. .+... . ....+..+...+..++++++|+++++. ++.|.+||.. ++.+ ..+..+..
T Consensus 199 ~~~~~g~~~---~--~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~-g~~~-------------~~~~~~~~ 257 (296)
T 3e5z_A 199 CLNARGETE---Y--QGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD-GDEL-------------GRVLTPQT 257 (296)
T ss_dssp EECSSSCEE---E--EEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT-SCEE-------------EEEECSSC
T ss_pred EECCCCcCc---C--CCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC-CCEE-------------EEEECCCC
Confidence 986 22210 0 001112244566789999999866665 7889999986 5433 23344445
Q ss_pred ceEEEEEe-C--CeEEEEeCCCeEEEeeCCC
Q 041325 361 AILCLAVV-S--NLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 361 ~v~~~~~~-~--~~l~s~~~dg~v~iwd~~~ 388 (450)
+.+++|. + +.|++++.++ +.-++.++
T Consensus 258 -~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 258 -TSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp -CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred -ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 7888885 3 3777777664 44455554
No 190
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.54 E-value=1.5e-12 Score=127.82 Aligned_cols=244 Identities=10% Similarity=0.033 Sum_probs=156.9
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCC-----cEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEE
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNG-----EIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSA 143 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg-----~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~ 143 (450)
+|...+..++| ||++||.++.++ .|++||+.+++.... .. .+ ..+..++|+||+ |+.+
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-----------~~-~~-~~~~~~~wspDg~~l~~~ 188 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-----------VL-ER-VKFSCMAWTHDGKGMFYN 188 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-----------EE-EE-ECSCCEEECTTSSEEEEE
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-----------cc-cC-cccceEEEEeCCCEEEEE
Confidence 45556888888 899998776543 899999999886543 01 11 136789999886 7777
Q ss_pred eCCCe----------------EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeee
Q 041325 144 HQDHK----------------IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWV 207 (450)
Q Consensus 144 ~~dg~----------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (450)
+.++. |++|++.++.... ..+. ...
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~------------~~v~---------------------------~~~ 229 (710)
T 2xdw_A 189 AYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED------------ILCA---------------------------EFP 229 (710)
T ss_dssp ECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC------------EEEE---------------------------CCT
T ss_pred EECCccccccccccccCCCCEEEEEECCCCcccc------------eEEe---------------------------ccC
Confidence 77665 8999987763100 0000 001
Q ss_pred cCCCceEEEEEccCCCEEEEEeC-----CCcEEEEecCC------Ce-EEEEeecccccceEEEEEeecCCcEEEEEcCC
Q 041325 208 HHVDTVSALALSSDGSLLYSTSW-----DRTFKIWRTSD------FR-CLESVKNAHDDAINAIVVSKSNDGFVYTGSAD 275 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~------~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 275 (450)
.|...+..+.|+|||++|+.++. +..|.+||+.+ +. ....+. .+...+.. .|+++++.+++.+..+
T Consensus 230 ~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~-~~~~~~~~-~~s~dg~~l~~~s~~~ 307 (710)
T 2xdw_A 230 DEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLI-DNFEGEYD-YVTNEGTVFTFKTNRH 307 (710)
T ss_dssp TCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEE-CSSSSCEE-EEEEETTEEEEEECTT
T ss_pred CCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEee-CCCCcEEE-EEeccCCEEEEEECCC
Confidence 24456788999999999888764 56899999976 43 344444 34444444 4777666555555443
Q ss_pred ---CcEEEEeCcchhhhccccchhhhhHhhccc--ceEEEEEcCCCCEEEEeeCCCc--EEEEEcCCCceeeeCCCCCCc
Q 041325 276 ---TKIKVWKKLRAALQVNKKHSLVQTLEKHKS--AVTALALSTDGTVLYSGACDRS--ILVWERDQGNYIVDGDDDSGH 348 (450)
Q Consensus 276 ---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~i~~l~~~~~~~~l~~g~~dg~--i~vwd~~~~~~~~~~~~~~~~ 348 (450)
+.|.+||+.++... ....+..+.. .+..++|++++.++++...|+. |.+|++.+++.+
T Consensus 308 ~~~~~l~~~d~~~~~~~------~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~--------- 372 (710)
T 2xdw_A 308 SPNYRLINIDFTDPEES------KWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALL--------- 372 (710)
T ss_dssp CTTCEEEEEETTSCCGG------GCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEE---------
T ss_pred CCCCEEEEEeCCCCCcc------cceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEE---------
Confidence 36999998664310 1122223333 6788999887888888888885 566777566533
Q ss_pred eeeeccccCCccceEEEEEeC--CeEE-EEe---CCCeEEEeeCCCC
Q 041325 349 MVLKGALRGHTKAILCLAVVS--NLLF-SGS---SDNTIRIWRRSSS 389 (450)
Q Consensus 349 ~~~~~~~~~~~~~v~~~~~~~--~~l~-s~~---~dg~v~iwd~~~~ 389 (450)
..+..+...+..+++++ +.++ +.+ ..+.|+.||+.++
T Consensus 373 ----~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 415 (710)
T 2xdw_A 373 ----KIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKE 415 (710)
T ss_dssp ----EEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSS
T ss_pred ----EecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCC
Confidence 23444566777888764 3333 322 3478999999875
No 191
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.54 E-value=4.2e-13 Score=131.44 Aligned_cols=242 Identities=11% Similarity=0.071 Sum_probs=152.2
Q ss_pred CCCcceEEEEE--eCCEEE-----EeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEE
Q 041325 73 GNSSYIPSLAI--AGKLLY-----GGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSA 143 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~-----tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~ 143 (450)
+|...+..++| ||++|| .|+.+..|++||+.+++.... .. +.. .....++|++|+ |+.+
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~--~~--------~~~--~~~~~~~wspDg~~l~~~ 185 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV--DV--------IEG--GKYATPKWTPDSKGFYYE 185 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS--CC--------BSC--CTTCCCEECTTSSEEEEE
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC--cc--------cCc--ccccceEEecCCCEEEEE
Confidence 46667888999 899999 566667899999999885411 00 011 112678999886 8888
Q ss_pred eCCCe-------------EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCC
Q 041325 144 HQDHK-------------IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHV 210 (450)
Q Consensus 144 ~~dg~-------------i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (450)
+.|.. |++|++.++.... ..+. ....|.
T Consensus 186 ~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~------------~lv~---------------------------~~~~~~ 226 (695)
T 2bkl_A 186 WLPTDPSIKVDERPGYTTIRYHTLGTEPSKD------------TVVH---------------------------ERTGDP 226 (695)
T ss_dssp ECCCCTTSCGGGGGGGCEEEEEETTSCGGGC------------EEEE---------------------------CCCCCT
T ss_pred EecCCCCCccccCCCCCEEEEEECCCCchhc------------eEEE---------------------------ecCCCC
Confidence 87766 9999998773100 0000 011245
Q ss_pred CceEEEEEccCCCEEEEEeCCC----cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEc---CCCcEEEEeC
Q 041325 211 DTVSALALSSDGSLLYSTSWDR----TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGS---ADTKIKVWKK 283 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~---~dg~i~vwd~ 283 (450)
..+..+.|+|+|++|+.++.++ .|.+||..+++.. .+. .+...+....+ ++++ +++.+. .++.|.+||+
T Consensus 227 ~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~-~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~ 302 (695)
T 2bkl_A 227 TTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLV-KGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDP 302 (695)
T ss_dssp TCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEE-ECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBT
T ss_pred EEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-Eee-cCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeC
Confidence 5788999999999998887666 6777777655433 333 34445555556 4344 555554 3588999998
Q ss_pred cchhhhccccchhhhhHhhc--ccceEEEEEcCCCCEEEEeeCCCcEEEEEcC-CCceeeeCCCCCCceeeeccccCC-c
Q 041325 284 LRAALQVNKKHSLVQTLEKH--KSAVTALALSTDGTVLYSGACDRSILVWERD-QGNYIVDGDDDSGHMVLKGALRGH-T 359 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~--~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~~~-~ 359 (450)
.+++.. ....+..+ ...+..++++ ++.++++...|+..++|.+. +++.. ..+..+ .
T Consensus 303 ~~~~~~------~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~-------------~~l~~~~~ 362 (695)
T 2bkl_A 303 AKPARA------SWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPV-------------RTVQLPGV 362 (695)
T ss_dssp TBCSGG------GCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEE-------------EECCCSSS
T ss_pred CCCCcc------CCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCee-------------EEecCCCC
Confidence 665310 01122222 3457888888 77888889999988888665 23322 222223 4
Q ss_pred cceEEEEEeC--CeEE-EE---eCCCeEEEeeCCCC
Q 041325 360 KAILCLAVVS--NLLF-SG---SSDNTIRIWRRSSS 389 (450)
Q Consensus 360 ~~v~~~~~~~--~~l~-s~---~~dg~v~iwd~~~~ 389 (450)
..+..+++++ +.++ +. ...++|++||+.++
T Consensus 363 ~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g 398 (695)
T 2bkl_A 363 GAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG 398 (695)
T ss_dssp SEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred eEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 5566666653 3444 22 23478999998865
No 192
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.54 E-value=5.8e-12 Score=111.36 Aligned_cols=236 Identities=9% Similarity=0.005 Sum_probs=151.9
Q ss_pred cceEEEEEeCC-EEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC-eEEEEe-CCCeEEEE
Q 041325 76 SYIPSLAIAGK-LLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD-KLFSAH-QDHKIRVW 152 (450)
Q Consensus 76 ~~v~~~~~d~~-~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~l~s~~-~dg~i~iw 152 (450)
.....+.+++. ++++...++.|.+||..+++.+... ........++++++ .++.+. .++.|.+|
T Consensus 44 ~~~~~i~~~~~~lyv~~~~~~~v~viD~~t~~~~~~i-------------~~~~~p~~i~~~~~g~lyv~~~~~~~v~~i 110 (328)
T 3dsm_A 44 DVAQSMVIRDGIGWIVVNNSHVIFAIDINTFKEVGRI-------------TGFTSPRYIHFLSDEKAYVTQIWDYRIFII 110 (328)
T ss_dssp SCEEEEEEETTEEEEEEGGGTEEEEEETTTCCEEEEE-------------ECCSSEEEEEEEETTEEEEEEBSCSEEEEE
T ss_pred ccceEEEEECCEEEEEEcCCCEEEEEECcccEEEEEc-------------CCCCCCcEEEEeCCCeEEEEECCCCeEEEE
Confidence 45677888554 4455556799999999998876652 22357788999644 466665 78999999
Q ss_pred EcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe-CC
Q 041325 153 KIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS-WD 231 (450)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~d 231 (450)
|..+.+... .++.... .+.......+++ .++.++++.. .+
T Consensus 111 D~~t~~~~~----------------~i~~g~~----------------------~~~~~~p~~i~~-~~~~lyv~~~~~~ 151 (328)
T 3dsm_A 111 NPKTYEITG----------------YIECPDM----------------------DMESGSTEQMVQ-YGKYVYVNCWSYQ 151 (328)
T ss_dssp ETTTTEEEE----------------EEECTTC----------------------CTTTCBCCCEEE-ETTEEEEEECTTC
T ss_pred ECCCCeEEE----------------EEEcCCc----------------------cccCCCcceEEE-ECCEEEEEcCCCC
Confidence 999874321 1110000 001113445666 3444444433 48
Q ss_pred CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC----------CcEEEEeCcchhhhccccchhhhhHh
Q 041325 232 RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD----------TKIKVWKKLRAALQVNKKHSLVQTLE 301 (450)
Q Consensus 232 g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----------g~i~vwd~~~~~~~~~~~~~~~~~~~ 301 (450)
+.|.++|+.+++.+..+.. ......+.+.++ ..+++++..+ +.|.++|..+++ ....+.
T Consensus 152 ~~v~viD~~t~~~~~~i~~--g~~p~~i~~~~d-G~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~--------v~~~~~ 220 (328)
T 3dsm_A 152 NRILKIDTETDKVVDELTI--GIQPTSLVMDKY-NKMWTITDGGYEGSPYGYEAPSLYRIDAETFT--------VEKQFK 220 (328)
T ss_dssp CEEEEEETTTTEEEEEEEC--SSCBCCCEECTT-SEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE--------EEEEEE
T ss_pred CEEEEEECCCCeEEEEEEc--CCCccceEEcCC-CCEEEEECCCccCCccccCCceEEEEECCCCe--------EEEEEe
Confidence 8999999999998888762 344577888864 3355555444 789999987665 222222
Q ss_pred hc-ccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC--C-eEEEE--
Q 041325 302 KH-KSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS--N-LLFSG-- 375 (450)
Q Consensus 302 ~~-~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~-~l~s~-- 375 (450)
.. ......++++|++++|+++.. .|.+||..+++... .............+++++ . +.++.
T Consensus 221 ~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~-----------~~~~~~~~~~p~gi~vdp~~g~lyva~~~ 287 (328)
T 3dsm_A 221 FKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPV-----------RPFLEFRDTKYYGLTVNPNNGEVYVADAI 287 (328)
T ss_dssp CCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCS-----------SCSBCCCSSCEEEEEECTTTCCEEEEECT
T ss_pred cCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCCceee-----------eeeecCCCCceEEEEEcCCCCeEEEEccc
Confidence 11 236789999999999988765 89999998776320 011111235577888874 2 55555
Q ss_pred --eCCCeEEEeeCC
Q 041325 376 --SSDNTIRIWRRS 387 (450)
Q Consensus 376 --~~dg~v~iwd~~ 387 (450)
..++.|.+||..
T Consensus 288 ~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 288 DYQQQGIVYRYSPQ 301 (328)
T ss_dssp TSSSEEEEEEECTT
T ss_pred ccccCCEEEEECCC
Confidence 578999999987
No 193
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.51 E-value=2.1e-11 Score=107.15 Aligned_cols=250 Identities=13% Similarity=0.117 Sum_probs=160.2
Q ss_pred CCCcceEEEEE--eCCEEEE-------eeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC-e-EE
Q 041325 73 GNSSYIPSLAI--AGKLLYG-------GSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD-K-LF 141 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~t-------gs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-~-l~ 141 (450)
+.-....+++| +++++++ +..++.|.+||..+++....... ...++...+.++++.++ + ++
T Consensus 15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~--------~~~~~~~~~~~i~~~~~~g~l~ 86 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKP--------EVNGYGGIPAGCQCDRDANQLF 86 (314)
T ss_dssp CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECC--------EETTEECCEEEEEECSSSSEEE
T ss_pred ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEec--------ccCCCCCCCceEEEecCCCcEE
Confidence 45556788889 5777877 67789999999888775433110 01124467899999987 4 67
Q ss_pred EEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC
Q 041325 142 SAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD 221 (450)
Q Consensus 142 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 221 (450)
.++.++.|.+||.+ ++..... ..... ......+.+++++++
T Consensus 87 v~~~~~~l~~~d~~-g~~~~~~---------------~~~~~-----------------------~~~~~~~~~i~~d~~ 127 (314)
T 1pjx_A 87 VADMRLGLLVVQTD-GTFEEIA---------------KKDSE-----------------------GRRMQGCNDCAFDYE 127 (314)
T ss_dssp EEETTTEEEEEETT-SCEEECC---------------SBCTT-----------------------SCBCBCCCEEEECTT
T ss_pred EEECCCCEEEEeCC-CCEEEEE---------------eccCC-----------------------CccccCCcCEEECCC
Confidence 77666689999987 5321100 00000 012235788999999
Q ss_pred CCEEEEEeCC---------------CcEEEEecCCCeEEEEeecccccceEEEEEe----ecCCcEEEEEcCCCcEEEEe
Q 041325 222 GSLLYSTSWD---------------RTFKIWRTSDFRCLESVKNAHDDAINAIVVS----KSNDGFVYTGSADTKIKVWK 282 (450)
Q Consensus 222 ~~~l~~~~~d---------------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~l~~~~~dg~i~vwd 282 (450)
|+++++...+ +.|..||.. ++...... +......++++ ++++.++++...++.|.+||
T Consensus 128 g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~--~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~ 204 (314)
T 1pjx_A 128 GNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT--AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYD 204 (314)
T ss_dssp SCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE--EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEE
T ss_pred CCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc--CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEE
Confidence 9887776654 567777766 55433322 34456888898 75444556667789999999
Q ss_pred Ccc-hhhhccccchhhhhHhhcc-cceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCcc
Q 041325 283 KLR-AALQVNKKHSLVQTLEKHK-SAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK 360 (450)
Q Consensus 283 ~~~-~~~~~~~~~~~~~~~~~~~-~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (450)
... +... .......+..+. ..+..++++++|+++++...++.|.+||..+++.+ ..+..+..
T Consensus 205 ~~~~g~~~---~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~-------------~~~~~~~~ 268 (314)
T 1pjx_A 205 IKGPAKIE---NKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPK-------------MRIRCPFE 268 (314)
T ss_dssp EEETTEEE---EEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCS-------------EEEECSSS
T ss_pred CCCCCccc---cceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEe-------------EEEeCCCC
Confidence 752 2210 000111222232 55788999999998888878899999998865533 12233446
Q ss_pred ceEEEEEeC--CeE-EEEeCCCeEEEeeCCC
Q 041325 361 AILCLAVVS--NLL-FSGSSDNTIRIWRRSS 388 (450)
Q Consensus 361 ~v~~~~~~~--~~l-~s~~~dg~v~iwd~~~ 388 (450)
.+.++++++ +.| ++...++.|..|++..
T Consensus 269 ~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 269 KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 788899864 434 4555668899999874
No 194
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.51 E-value=3e-13 Score=123.26 Aligned_cols=188 Identities=6% Similarity=-0.084 Sum_probs=117.0
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEE-------------------EEEeecCCcEEEEE---
Q 041325 215 ALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINA-------------------IVVSKSNDGFVYTG--- 272 (450)
Q Consensus 215 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~-------------------~~~~~~~~~~l~~~--- 272 (450)
.+.|+|+|+.|+.++.++.|.+||+.+++...... .+...... +.++|+++.+++..
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~ 163 (396)
T 3c5m_A 85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYT-VDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYH 163 (396)
T ss_dssp TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHH
T ss_pred cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEe-cccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeecc
Confidence 36799999999999999999999999887655444 22221111 22344333222211
Q ss_pred -cCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcC-CCCEEEEeeCC------CcEEEEEcCCCceeeeCCC
Q 041325 273 -SADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST-DGTVLYSGACD------RSILVWERDQGNYIVDGDD 344 (450)
Q Consensus 273 -~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~g~~d------g~i~vwd~~~~~~~~~~~~ 344 (450)
..+..|.+||+.+++. . .+..+...+..+.|+| +++.|+..+.+ ..|.+||+..++..
T Consensus 164 ~~~~~~l~~~d~~~g~~--------~-~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~----- 229 (396)
T 3c5m_A 164 TNPTCRLIKVDIETGEL--------E-VIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR----- 229 (396)
T ss_dssp TCCCEEEEEEETTTCCE--------E-EEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-----
T ss_pred CCCcceEEEEECCCCcE--------E-eeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-----
Confidence 4567899999876541 1 1123566788999999 78877766543 46888888755321
Q ss_pred CCCceeeeccccCC-ccceEEEEEeC--CeEEEEeCC-----CeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEE
Q 041325 345 DSGHMVLKGALRGH-TKAILCLAVVS--NLLFSGSSD-----NTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAV 416 (450)
Q Consensus 345 ~~~~~~~~~~~~~~-~~~v~~~~~~~--~~l~s~~~d-----g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 416 (450)
...... ...+..+.|++ ++|+.++.+ +.|++||+.++. ...+..+.+ .. +.|+
T Consensus 230 --------~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~------~~~l~~~~~----~~-~~~s 290 (396)
T 3c5m_A 230 --------KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLE------NEEVMVMPP----CS-HLMS 290 (396)
T ss_dssp --------ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCC------EEEEEECCS----EE-EEEE
T ss_pred --------EeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCC------eEEeeeCCC----CC-CCcc
Confidence 111111 23567788874 466666543 459999998641 122222222 22 8899
Q ss_pred e-cCCCCCCCCCCCCceEEEEEcc----------------cCCcEEEEEe
Q 041325 417 V-DSDYSNRNSDHSSTSFLVYSGS----------------LDCEIKIWQI 449 (450)
Q Consensus 417 ~-~~~~~~~~~~~~~~~~~l~s~~----------------~Dg~i~iw~l 449 (450)
| +++ ++++++ .++.|++||+
T Consensus 291 ~~dg~-------------~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~ 327 (396)
T 3c5m_A 291 NFDGS-------------LMVGDGCDAPVDVADADSYNIENDPFLYVLNT 327 (396)
T ss_dssp CSSSS-------------EEEEEECCC----------CCCCCCEEEEEET
T ss_pred CCCCc-------------eEEEecCCcceeeccccccccCCCCcEEEEec
Confidence 9 988 777654 3478999986
No 195
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.50 E-value=8.3e-12 Score=107.04 Aligned_cols=189 Identities=12% Similarity=0.075 Sum_probs=137.2
Q ss_pred CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCC-CceEEEEEeCCe-EEEEeCCCeEEEEEcCCCceeEE
Q 041325 85 GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNG-DAVKSLVVLGDK-LFSAHQDHKIRVWKIDNNTSAYY 162 (450)
Q Consensus 85 ~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~v~~l~~~~~~-l~s~~~dg~i~iw~~~~~~~~~~ 162 (450)
+++|++++.|+.|.+||.++++.+.. +..+. ..+.++.+.+++ ++. +.++.|..||. +++..
T Consensus 5 ~~~lv~~~~~~~v~~~d~~tG~~~w~------------~~~~~~~~~~~~~~~pdG~ilv-s~~~~V~~~d~-~G~~~-- 68 (276)
T 3no2_A 5 QHLLVGGSGWNKIAIINKDTKEIVWE------------YPLEKGWECNSVAATKAGEILF-SYSKGAKMITR-DGREL-- 68 (276)
T ss_dssp CEEEEECTTCSEEEEEETTTTEEEEE------------EECCTTCCCCEEEECTTSCEEE-ECBSEEEEECT-TSCEE--
T ss_pred CcEEEeeCCCCEEEEEECCCCeEEEE------------eCCCccCCCcCeEECCCCCEEE-eCCCCEEEECC-CCCEE--
Confidence 68899999999999999999998776 33333 467888898877 444 55788999998 55321
Q ss_pred eccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeC-CCcEEEEecCC
Q 041325 163 STSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSW-DRTFKIWRTSD 241 (450)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~ 241 (450)
..+.. +....+.++.+.++|+++++.+. ++.|..+|. +
T Consensus 69 --------------W~~~~--------------------------~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~ 107 (276)
T 3no2_A 69 --------------WNIAA--------------------------PAGCEMQTARILPDGNALVAWCGHPSTILEVNM-K 107 (276)
T ss_dssp --------------EEEEC--------------------------CTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-T
T ss_pred --------------EEEcC--------------------------CCCccccccEECCCCCEEEEecCCCCEEEEEeC-C
Confidence 11110 11235778899999999999887 788888886 6
Q ss_pred CeEEEEeecc-----cccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCC
Q 041325 242 FRCLESVKNA-----HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDG 316 (450)
Q Consensus 242 ~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 316 (450)
++.+..+... +......+...+ +.+++++...++.|..||.. ++ .+..+... ..+.++...++|
T Consensus 108 Gk~l~~~~~~~~~~~~~~~~~~v~~~~-~G~~lv~~~~~~~v~~~d~~-G~--------~~w~~~~~-~~~~~~~~~~~g 176 (276)
T 3no2_A 108 GEVLSKTEFETGIERPHAQFRQINKNK-KGNYLVPLFATSEVREIAPN-GQ--------LLNSVKLS-GTPFSSAFLDNG 176 (276)
T ss_dssp SCEEEEEEECCSCSSGGGSCSCCEECT-TSCEEEEETTTTEEEEECTT-SC--------EEEEEECS-SCCCEEEECTTS
T ss_pred CCEEEEEeccCCCCcccccccCceECC-CCCEEEEecCCCEEEEECCC-CC--------EEEEEECC-CCccceeEcCCC
Confidence 7777666421 112344556666 44588899999999999986 55 33333322 345678888999
Q ss_pred CEEEEeeCCCcEEEEEcCCCceeee
Q 041325 317 TVLYSGACDRSILVWERDQGNYIVD 341 (450)
Q Consensus 317 ~~l~~g~~dg~i~vwd~~~~~~~~~ 341 (450)
++++++..++.|..+|..+++.+.+
T Consensus 177 ~~~v~~~~~~~v~~~d~~tG~~~w~ 201 (276)
T 3no2_A 177 DCLVACGDAHCFVQLNLESNRIVRR 201 (276)
T ss_dssp CEEEECBTTSEEEEECTTTCCEEEE
T ss_pred CEEEEeCCCCeEEEEeCcCCcEEEE
Confidence 9999999888999999999987753
No 196
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.48 E-value=1e-11 Score=110.85 Aligned_cols=219 Identities=12% Similarity=0.119 Sum_probs=135.5
Q ss_pred cceEEEEE--eCCEEEEeeCC---C--cEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCC
Q 041325 76 SYIPSLAI--AGKLLYGGSSN---G--EIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQD 146 (450)
Q Consensus 76 ~~v~~~~~--d~~~l~tgs~d---g--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d 146 (450)
..+.+++| ||++|+.++.+ + .|.+|++.+++.... . .+.. +..++|+|++ |+.++.+
T Consensus 59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l------------~-~~~~-~~~~~wspdg~~l~~~~~~ 124 (347)
T 2gop_A 59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKI------------L-EAKN-IRSLEWNEDSRKLLIVGFK 124 (347)
T ss_dssp ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEE------------E-EESE-EEEEEECTTSSEEEEEEEC
T ss_pred ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEE------------E-cCCC-ccceeECCCCCEEEEEEcc
Confidence 35677888 79999987754 3 478888887764443 2 2223 8999999876 6666532
Q ss_pred ---------------------------CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEe
Q 041325 147 ---------------------------HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVR 199 (450)
Q Consensus 147 ---------------------------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (450)
..|.+||+.+++. +
T Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~----------------~----------------------- 165 (347)
T 2gop_A 125 RREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEV----------------I----------------------- 165 (347)
T ss_dssp CCC---------CCCC---------CEEEEEEEETTTTEE----------------E-----------------------
T ss_pred CCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeE----------------E-----------------------
Confidence 3566666665521 0
Q ss_pred ecceeeeecCCCceEEEEEccCCCEEEEEeCCC-------cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEE
Q 041325 200 RHKKCTWVHHVDTVSALALSSDGSLLYSTSWDR-------TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTG 272 (450)
Q Consensus 200 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 272 (450)
..+.. . .+..++|+|+| +++++..++ ...||.+.+++. ..+. .+ ..+..+ +|++. .|+.+
T Consensus 166 ----~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~-~~-~~~~~~--spdg~-~l~~~ 232 (347)
T 2gop_A 166 ----EEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMF-EK-VSFYAV--DSDGE-RILLY 232 (347)
T ss_dssp ----EEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEE-EEEE-EE-ESEEEE--EECSS-CEEEE
T ss_pred ----eeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCce-EEec-cC-cceeeE--CCCCC-EEEEE
Confidence 01111 1 56788999999 777776542 344554445554 3333 23 444444 77555 44444
Q ss_pred cCC--------CcEEEEeCcchhhhccccchhhhhHhhcccceEE-EEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCC
Q 041325 273 SAD--------TKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTA-LALSTDGTVLYSGACDRSILVWERDQGNYIVDGD 343 (450)
Q Consensus 273 ~~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~-l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 343 (450)
+.+ ..|.+|| +++ .......+...+.. +.|+ ++ ++++++.++.+++| +.+++..
T Consensus 233 ~~~~~~~~~~~~~l~~~d--~~~--------~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~---- 295 (347)
T 2gop_A 233 GKPEKKYMSEHNKLYIYD--GKE--------VMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIK---- 295 (347)
T ss_dssp ECCSSSCCCSSCEEEEEC--SSC--------EEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEE----
T ss_pred EccccCCccccceEEEEC--CCc--------eEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceE----
Confidence 432 4677887 332 12222345567776 8999 88 89999999999999 8754321
Q ss_pred CCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeE-EEeeCC
Q 041325 344 DDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTI-RIWRRS 387 (450)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v-~iwd~~ 387 (450)
.+..+...|.+++|++.++++++.++.. .+|.+.
T Consensus 296 ----------~~~~~~~~v~~~~~s~~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 296 ----------PIAKGRHWIMGFDVDEIVVYLKETATRLRELFTWD 330 (347)
T ss_dssp ----------EEECSSSEEEEEEESSSEEEEEECSSSCCEEEEES
T ss_pred ----------EEecCCCeEEeeeeeCcEEEEEcCCCChHHheEeC
Confidence 2223467788898888666677777654 677654
No 197
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.44 E-value=6.4e-10 Score=99.62 Aligned_cols=282 Identities=9% Similarity=-0.014 Sum_probs=163.3
Q ss_pred eCCEEEEeeC--CC---cEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEe----------CC
Q 041325 84 AGKLLYGGSS--NG---EIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAH----------QD 146 (450)
Q Consensus 84 d~~~l~tgs~--dg---~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~----------~d 146 (450)
++++++.... .+ .|.++|..+++.+.. +.....+ .++++||+ ++.+. .+
T Consensus 31 ~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~------------i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~ 96 (373)
T 2mad_H 31 DGRRSYINLPAHHSAIIQQWVLDAGSGSILGH------------VNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRT 96 (373)
T ss_pred CCCEEEEeCCcccCCccEEEEEECCCCeEEEE------------ecCCCCC--CeEECCCCCEEEEEeccccccccCCCC
Confidence 4555554432 22 789999998886544 1111223 88999887 66554 36
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLY 226 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 226 (450)
+.|.+||..+.+. +..++.... ... .+......++++|+|++|+
T Consensus 97 ~~v~viD~~t~~~----------------~~~i~~~~~-------------------~~~-~~g~~p~~~~~spDG~~l~ 140 (373)
T 2mad_H 97 DYVEVFDPVTFLP----------------IADIELPDA-------------------PRF-DVGPYSWMNANTPNNADLL 140 (373)
T ss_pred CeEEEEECCCCcE----------------EEEEECCCc-------------------ccc-ccCCCccceEECCCCCEEE
Confidence 7899999987633 222211100 000 0112345789999999999
Q ss_pred EEeC--CCcEEEEecCCCeEEEE-eecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhc
Q 041325 227 STSW--DRTFKIWRTSDFRCLES-VKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKH 303 (450)
Q Consensus 227 ~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 303 (450)
++.. ++.|.++| .+++.+.. +. ... ++.+.|.....+++.+.||.+.++|. +++...... ....+.+.
T Consensus 141 v~n~~~~~~v~viD-~t~~~~~~~i~--~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~--~~~~~~~~ 211 (373)
T 2mad_H 141 FFQFAAGPAVGLVV-QGGSSDDQLLS--SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGL--VGAMLTAA 211 (373)
T ss_pred EEecCCCCeEEEEE-CCCCEEeEEcC--CCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEe--ccccccCC
Confidence 8874 57899999 99988877 64 222 24455656667778889999999998 654110000 00001111
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeec----cccCCccceEEEEEe--CCeEEEEeC
Q 041325 304 KSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKG----ALRGHTKAILCLAVV--SNLLFSGSS 377 (450)
Q Consensus 304 ~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~--~~~l~s~~~ 377 (450)
........+.+++..++..+.++.+.+.|+......... ...... ...........+.++ ++.++.+..
T Consensus 212 ~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~-----~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~ 286 (373)
T 2mad_H 212 QNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKA-----PIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTS 286 (373)
T ss_pred cceeecceeEecCCEEEEEcCCceEEEEeccCCcceEee-----eeeecCCcccccceecCceEeEEECCCCCEEEEEec
Confidence 111223456666655555557889999999754321100 000000 000011222234444 445555432
Q ss_pred ----------CCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcc-cCCcEEE
Q 041325 378 ----------DNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGS-LDCEIKI 446 (450)
Q Consensus 378 ----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~-~Dg~i~i 446 (450)
++.|.++|..+. +.+..+.. .....+++|+||++. +++++. .++.|.+
T Consensus 287 ~~~~~~~~~~~~~V~VID~~t~--------~vv~~i~~-g~~p~~i~~s~Dg~~------------~l~v~~~~~~~V~V 345 (373)
T 2mad_H 287 EQSAWKLHAAAKEVTSVTGLVG--------QTSSQISL-GHDVDAISVAQDGGP------------DLYALSAGTEVLHI 345 (373)
T ss_pred cCCcccccCCCCeEEEEECCCC--------EEEEEEEC-CCCcCeEEECCCCCe------------EEEEEcCCCCeEEE
Confidence 357999999874 55566642 335889999999873 455555 5899999
Q ss_pred EEeC
Q 041325 447 WQIR 450 (450)
Q Consensus 447 w~l~ 450 (450)
||++
T Consensus 346 iD~~ 349 (373)
T 2mad_H 346 YDAG 349 (373)
T ss_pred EECC
Confidence 9974
No 198
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.43 E-value=2.7e-10 Score=102.93 Aligned_cols=291 Identities=10% Similarity=0.085 Sum_probs=174.9
Q ss_pred CCCCccceeeeEEeecCC-------Ccce-EEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCC
Q 041325 57 APAASEHQCSATLKVKGN-------SSYI-PSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGD 128 (450)
Q Consensus 57 ~~~~~~~~~~~~l~~~~h-------~~~v-~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 128 (450)
.....+++.+-.+..... ...+ ..+..++..++.++.+|.|..+|..+++......... .
T Consensus 67 a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~------------~ 134 (376)
T 3q7m_A 67 ALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAG------------E 134 (376)
T ss_dssp EEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECSS------------C
T ss_pred EEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCC------------c
Confidence 344456666666653221 2223 3445578889999999999999999998776533221 1
Q ss_pred ceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeec
Q 041325 129 AVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVH 208 (450)
Q Consensus 129 ~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (450)
........++.++.++.++.|..+|..+++......... . ......
T Consensus 135 ~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~----------------~------------------~~~~~~ 180 (376)
T 3q7m_A 135 ALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDM----------------P------------------SLSLRG 180 (376)
T ss_dssp CCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC---------------------------------------CC
T ss_pred eEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCC----------------C------------------ceeecC
Confidence 111223446678889999999999998885432211110 0 000000
Q ss_pred CCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccc---------e-EEEEEeecCCcEEEEEcCCCcE
Q 041325 209 HVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDA---------I-NAIVVSKSNDGFVYTGSADTKI 278 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~---------v-~~~~~~~~~~~~l~~~~~dg~i 278 (450)
...++ .. +..++.+..++.|..+|..+++.+.......... + ..... .++.++.++.++.+
T Consensus 181 ~~~~~----~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~v~~~~~~g~l 251 (376)
T 3q7m_A 181 ESAPT----TA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV---VNGVVFALAYNGNL 251 (376)
T ss_dssp CCCCE----EE--TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEE---ETTEEEEECTTSCE
T ss_pred CCCcE----EE--CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE---ECCEEEEEecCcEE
Confidence 11111 11 3467778889999999999998887765221100 1 11112 23578888889999
Q ss_pred EEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC
Q 041325 279 KVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358 (450)
Q Consensus 279 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (450)
..+|..+++. +.... ......+.. ++..++.++.++.|..+|..+++.+..... ..
T Consensus 252 ~~~d~~tG~~--------~w~~~--~~~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~~w~~~~------------~~ 307 (376)
T 3q7m_A 252 TALDLRSGQI--------MWKRE--LGSVNDFIV--DGNRIYLVDQNDRVMALTIDGGVTLWTQSD------------LL 307 (376)
T ss_dssp EEEETTTCCE--------EEEEC--CCCEEEEEE--ETTEEEEEETTCCEEEEETTTCCEEEEECT------------TT
T ss_pred EEEECCCCcE--------Eeecc--CCCCCCceE--ECCEEEEEcCCCeEEEEECCCCcEEEeecc------------cC
Confidence 9999987762 11111 122334444 466788888999999999999986632210 11
Q ss_pred ccceEEEEEeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEc
Q 041325 359 TKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSG 438 (450)
Q Consensus 359 ~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~ 438 (450)
...+......++.|+.++.+|.|.++|..++ +.+.........+.......+ . .|+.+
T Consensus 308 ~~~~~~~~~~~~~l~v~~~~g~l~~~d~~tG--------~~~~~~~~~~~~~~~~~~~~~-~-------------~l~v~ 365 (376)
T 3q7m_A 308 HRLLTSPVLYNGNLVVGDSEGYLHWINVEDG--------RFVAQQKVDSSGFQTEPVAAD-G-------------KLLIQ 365 (376)
T ss_dssp TSCCCCCEEETTEEEEECTTSEEEEEETTTC--------CEEEEEECCTTCBCSCCEEET-T-------------EEEEE
T ss_pred CCcccCCEEECCEEEEEeCCCeEEEEECCCC--------cEEEEEecCCCcceeCCEEEC-C-------------EEEEE
Confidence 1222334446788999999999999999876 344444332233322111223 3 58888
Q ss_pred ccCCcEEEEE
Q 041325 439 SLDCEIKIWQ 448 (450)
Q Consensus 439 ~~Dg~i~iw~ 448 (450)
+.||.|+.|+
T Consensus 366 ~~~G~l~~~~ 375 (376)
T 3q7m_A 366 AKDGTVYSIT 375 (376)
T ss_dssp BTTSCEEEEE
T ss_pred eCCCEEEEEe
Confidence 8999999987
No 199
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.43 E-value=7.7e-10 Score=96.32 Aligned_cols=237 Identities=14% Similarity=0.110 Sum_probs=156.2
Q ss_pred cCCCceEEEEEeCCe-EEEEeC-CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecc
Q 041325 125 GNGDAVKSLVVLGDK-LFSAHQ-DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHK 202 (450)
Q Consensus 125 ~h~~~v~~l~~~~~~-l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (450)
.+...+.++++.+++ ++.+.. ++.|.+||.. +...... .+
T Consensus 12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~---------------~~---------------------- 53 (299)
T 2z2n_A 12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYP---------------LP---------------------- 53 (299)
T ss_dssp SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEE---------------CS----------------------
T ss_pred CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEec---------------CC----------------------
Confidence 444688999999776 555554 7899999987 4221100 00
Q ss_pred eeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeec-ccccceEEEEEeecCCcEEEEEcCCCcEEEE
Q 041325 203 KCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKN-AHDDAINAIVVSKSNDGFVYTGSADTKIKVW 281 (450)
Q Consensus 203 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw 281 (450)
.+...+.++++++++.++++...++.|..||.. ++. ..+.. .....+..+++.++ +.++++...++.|..|
T Consensus 54 -----~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~ 125 (299)
T 2z2n_A 54 -----TPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GII-KEYTLPNPDSAPYGITEGPN-GDIWFTEMNGNRIGRI 125 (299)
T ss_dssp -----STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-EEEECSSTTCCEEEEEECTT-SCEEEEETTTTEEEEE
T ss_pred -----cccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcE-EEEeCCCcCCCceeeEECCC-CCEEEEecCCceEEEE
Confidence 123468899999999988877778899999986 332 22221 24457888999863 3466666678899999
Q ss_pred eCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccc
Q 041325 282 KKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA 361 (450)
Q Consensus 282 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (450)
|. +++.. ..........+..+++.++|+++++...++.|..||. +++... .........
T Consensus 126 d~-~g~~~-------~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~------------~~~~~~~~~ 184 (299)
T 2z2n_A 126 TD-DGKIR-------EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE------------FKIPTPASG 184 (299)
T ss_dssp CT-TCCEE-------EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE------------EECSSTTCC
T ss_pred CC-CCCEE-------EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE------------eeCCCCCCc
Confidence 97 33311 0011123456889999999988887777889999998 655331 112223345
Q ss_pred eEEEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcc
Q 041325 362 ILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGS 439 (450)
Q Consensus 362 v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~ 439 (450)
+.++++++ ++.++...++.|.+||. ++. ........+...+.++++.+++. ++++..
T Consensus 185 ~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~-------~~~~~~~~~~~~~~~i~~~~~g~-------------l~v~~~ 243 (299)
T 2z2n_A 185 PVGITKGNDDALWFVEIIGNKIGRITT-SGE-------ITEFKIPTPNARPHAITAGAGID-------------LWFTEW 243 (299)
T ss_dssp EEEEEECTTSSEEEEETTTTEEEEECT-TCC-------EEEEECSSTTCCEEEEEECSTTC-------------EEEEET
T ss_pred ceeEEECCCCCEEEEccCCceEEEECC-CCc-------EEEEECCCCCCCceeEEECCCCC-------------EEEecc
Confidence 67888874 45555556789999998 431 11122334556788999999988 677666
Q ss_pred cCCcEEEEEe
Q 041325 440 LDCEIKIWQI 449 (450)
Q Consensus 440 ~Dg~i~iw~l 449 (450)
.++.|..||.
T Consensus 244 ~~~~i~~~d~ 253 (299)
T 2z2n_A 244 GANKIGRLTS 253 (299)
T ss_dssp TTTEEEEEET
T ss_pred CCceEEEECC
Confidence 6788888874
No 200
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.42 E-value=2.7e-11 Score=119.53 Aligned_cols=281 Identities=12% Similarity=0.058 Sum_probs=163.0
Q ss_pred eEEEEEeCCEEEEeeCCCc---EEEecC--C---CCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCC-
Q 041325 78 IPSLAIAGKLLYGGSSNGE---IRAWNR--D---PNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQD- 146 (450)
Q Consensus 78 v~~~~~d~~~l~tgs~dg~---v~vw~~--~---~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~d- 146 (450)
+.....||++++....++. -.+|.. . .++......... ...+|...+..++|+||+ |+.+..+
T Consensus 111 ~~~p~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~------l~~~~~~~~~~~~~SPDG~~la~~~~~~ 184 (741)
T 1yr2_A 111 FGLPQRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNT------WAKDGATALDAWAASDDGRLLAYSVQDG 184 (741)
T ss_dssp ECCCEEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGG------CC----EEEEEEEECTTSSEEEEEEEET
T ss_pred cCCCEEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHH------hccCCCEEEEeEEECCCCCEEEEEEcCC
Confidence 3344468988886655433 455543 2 232222111000 012344478899999887 5544332
Q ss_pred ----CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCC
Q 041325 147 ----HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDG 222 (450)
Q Consensus 147 ----g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 222 (450)
..|++||+.+++.... . .+...+..++|+||
T Consensus 185 G~e~~~i~v~dl~tg~~~~~---------------~-----------------------------~~~~~~~~~~wspD- 219 (741)
T 1yr2_A 185 GSDWRTVKFVGVADGKPLAD---------------E-----------------------------LKWVKFSGLAWLGN- 219 (741)
T ss_dssp TCSEEEEEEEETTTCCEEEE---------------E-----------------------------EEEEESCCCEESTT-
T ss_pred CCceEEEEEEECCCCCCCCc---------------c-----------------------------CCCceeccEEEECC-
Confidence 3699999998842110 0 00011346889999
Q ss_pred CEEEEEeCCCc--------------EEEEecCCCeE--EEEeec-ccccceEEEEEeecCCcEEEEEcC-----CCcEEE
Q 041325 223 SLLYSTSWDRT--------------FKIWRTSDFRC--LESVKN-AHDDAINAIVVSKSNDGFVYTGSA-----DTKIKV 280 (450)
Q Consensus 223 ~~l~~~~~dg~--------------i~iwd~~~~~~--~~~~~~-~~~~~v~~~~~~~~~~~~l~~~~~-----dg~i~v 280 (450)
+.|+.+..++. |.+|++.++.. ...+.. .+...+..+.|+|++. +|+..+. ...|++
T Consensus 220 ~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~-~l~~~~~~~~~~~~~l~~ 298 (741)
T 1yr2_A 220 DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGR-WVVITSSEGTDPVNTVHV 298 (741)
T ss_dssp SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC-EEEEEEECTTCSCCEEEE
T ss_pred CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCC-EEEEEEEccCCCcceEEE
Confidence 88888876554 88999977652 222221 2233578999998665 4444443 348999
Q ss_pred EeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC----CcEEEEEcCCCc-eeeeCCCCCCceeeeccc
Q 041325 281 WKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD----RSILVWERDQGN-YIVDGDDDSGHMVLKGAL 355 (450)
Q Consensus 281 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d----g~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~ 355 (450)
||+.++.. . ....+..+...+... ++|+|+.|+..+.+ +.|.+||+.++. . ....+
T Consensus 299 ~d~~~~~~----~--~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~------------~~~l~ 359 (741)
T 1yr2_A 299 ARVTNGKI----G--PVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPR------------FDTVV 359 (741)
T ss_dssp EEEETTEE----C--CCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCE------------EEEEE
T ss_pred EECCCCCC----c--ccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccc------------cEEEe
Confidence 99865420 0 012222233334444 34889988887753 459999987641 1 11222
Q ss_pred cCCccceEEEEEeCC-eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecC-CCcceEEEEEEecCCCCCCCCCCCCceE
Q 041325 356 RGHTKAILCLAVVSN-LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG-HRRPVKCLTAVVDSDYSNRNSDHSSTSF 433 (450)
Q Consensus 356 ~~~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~~~~~~~~~~~~ 433 (450)
..+...+..+++.++ ++++...|+..+||.+... ......+.. +...+..+.++++++
T Consensus 360 ~~~~~~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~-------g~~~~~l~~~~~~~v~~~~~s~d~~------------- 419 (741)
T 1yr2_A 360 PESKDNLESVGIAGNRLFASYIHDAKSQVLAFDLD-------GKPAGAVSLPGIGSASGLSGRPGDR------------- 419 (741)
T ss_dssp CCCSSEEEEEEEEBTEEEEEEEETTEEEEEEEETT-------SCEEEECBCSSSCEEEEEECCBTCS-------------
T ss_pred cCCCCeEEEEEEECCEEEEEEEECCEEEEEEEeCC-------CCceeeccCCCCeEEEEeecCCCCC-------------
Confidence 334445667777755 7788888998888765421 123444543 366788999999877
Q ss_pred EEE----EcccCCcEEEEEe
Q 041325 434 LVY----SGSLDCEIKIWQI 449 (450)
Q Consensus 434 ~l~----s~~~Dg~i~iw~l 449 (450)
.|+ +....++|++||+
T Consensus 420 ~l~~~~ss~~~P~~i~~~d~ 439 (741)
T 1yr2_A 420 HAYLSFSSFTQPATVLALDP 439 (741)
T ss_dssp CEEEEEEETTEEEEEEEEET
T ss_pred EEEEEEcCCCCCCEEEEEEC
Confidence 344 3445688999986
No 201
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.41 E-value=6.2e-10 Score=104.92 Aligned_cols=322 Identities=11% Similarity=0.042 Sum_probs=184.8
Q ss_pred cCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCC--CCCceeeeecCCCCcceeEEecCCCce
Q 041325 55 KQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRD--PNNYVNITSTDVGDHANVVATGNGDAV 130 (450)
Q Consensus 55 ~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~v 130 (450)
.......+++.+.++. ....+..+.+ ||+++++++.||.|.+||+. +.+.+.. +.. ....
T Consensus 179 V~viD~~t~~v~~~i~---~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~------------i~~-G~~P 242 (567)
T 1qks_A 179 IALIDGSTYEIKTVLD---TGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAE------------IKI-GSEA 242 (567)
T ss_dssp EEEEETTTCCEEEEEE---CSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEE------------EEC-CSEE
T ss_pred EEEEECCCCeEEEEEe---CCCCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEE------------Eec-CCCC
Confidence 3344556677777776 2334567788 89999999999999999995 5554443 112 2346
Q ss_pred EEEEEe----CCe--EEE-EeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecce
Q 041325 131 KSLVVL----GDK--LFS-AHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKK 203 (450)
Q Consensus 131 ~~l~~~----~~~--l~s-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (450)
..++|+ |++ +++ ...+++|.++|..+.+.. ..++.... ..
T Consensus 243 ~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~----------------~~i~~~~~-----------------~~ 289 (567)
T 1qks_A 243 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK----------------KIQSTRGM-----------------TY 289 (567)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEE----------------EEEECCEE-----------------CT
T ss_pred ceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEE----------------EEEecccc-----------------cc
Confidence 789999 465 444 455799999998887432 22211000 00
Q ss_pred eeeecCCC-ceEEEEEccCCCE-EEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEE
Q 041325 204 CTWVHHVD-TVSALALSSDGSL-LYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVW 281 (450)
Q Consensus 204 ~~~~~~~~-~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw 281 (450)
.....|.. .+..+..++++.. ++....+|.|.++|....+.+.............+.|+|++..++++...++.|.++
T Consensus 290 ~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~Vi 369 (567)
T 1qks_A 290 DEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVI 369 (567)
T ss_dssp TTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEE
T ss_pred ccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEE
Confidence 00001222 5777888887555 444456799999999876433322222445677889999777566777788999999
Q ss_pred eCcchhhhccccchhh-hhHhhcccceEEEEEcCCCCEE-EEee-CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCC
Q 041325 282 KKLRAALQVNKKHSLV-QTLEKHKSAVTALALSTDGTVL-YSGA-CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358 (450)
Q Consensus 282 d~~~~~~~~~~~~~~~-~~~~~~~~~i~~l~~~~~~~~l-~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (450)
|+.+++.... . .+ . ...|.+.-..+ ++|++..+ +++. .++.|.++|..+.+.. ...+.....+...
T Consensus 370 D~~t~kl~~~--i-~vgg-~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~------~~~~kvv~~i~~~ 438 (567)
T 1qks_A 370 DTKEGKLVAI--E-DTGG-QTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHP------DNAWKILDSFPAL 438 (567)
T ss_dssp ETTTTEEEEE--E-ECSS-SSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCT------TTBTSEEEEEECS
T ss_pred ECCCCcEEEE--E-eccC-cCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCc------cccCEEEEEEecC
Confidence 9987762110 0 01 0 11232211122 57875444 4443 4689999999863210 0001122233222
Q ss_pred ccceEEEEEe--CCeEEEEeC-------CCeEEEeeCCCCccccCCCceeEEEec--------CCCcceEEEEEEecCCC
Q 041325 359 TKAILCLAVV--SNLLFSGSS-------DNTIRIWRRSSSVTDHQKGYSCLAVLE--------GHRRPVKCLTAVVDSDY 421 (450)
Q Consensus 359 ~~~v~~~~~~--~~~l~s~~~-------dg~v~iwd~~~~~~~~~~~~~~~~~~~--------~h~~~v~~l~~~~~~~~ 421 (450)
...-..+..+ +.++.+... .+.|.++|+.+....... +.+..+. .-...+..+.|+++|++
T Consensus 439 g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 516 (567)
T 1qks_A 439 GGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSD--PEFKTLPIAEWAGITEGQPRVVQGEFNKDGTE 516 (567)
T ss_dssp CSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSC--CCEEEECHHHHHTCCSSCCEEEEEEECTTSSE
T ss_pred CCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccC--CCcEEeccccccccCCCCcceEeeeECCCCCE
Confidence 2222233444 346666552 458999999863100001 1112221 12457889999999983
Q ss_pred CCCCCCCCCceEEEEEcc----cCCcEEEEEeC
Q 041325 422 SNRNSDHSSTSFLVYSGS----LDCEIKIWQIR 450 (450)
Q Consensus 422 ~~~~~~~~~~~~~l~s~~----~Dg~i~iw~l~ 450 (450)
++++.. .++.|.++|.+
T Consensus 517 ------------~~~s~~~~~~~~~~i~v~D~~ 537 (567)
T 1qks_A 517 ------------VWFSVWNGKDQESALVVVDDK 537 (567)
T ss_dssp ------------EEEEEECCTTSCCEEEEEETT
T ss_pred ------------EEEEeecCCCCCCcEEEEECC
Confidence 444422 47889998853
No 202
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.41 E-value=5.8e-10 Score=97.03 Aligned_cols=225 Identities=11% Similarity=0.103 Sum_probs=145.0
Q ss_pred CCCcceEEEEEe---CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCe
Q 041325 73 GNSSYIPSLAIA---GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHK 148 (450)
Q Consensus 73 ~h~~~v~~~~~d---~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~ 148 (450)
.+...--+..|+ +.++++...++.|..||..+++.... .....+.++++.+++ ++.+. ++.
T Consensus 10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~--------------~~~~~~~~i~~~~dG~l~v~~-~~~ 74 (297)
T 3g4e_A 10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV--------------TMDAPVSSVALRQSGGYVATI-GTK 74 (297)
T ss_dssp CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE--------------ECSSCEEEEEEBTTSSEEEEE-TTE
T ss_pred cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEE--------------eCCCceEEEEECCCCCEEEEE-CCe
Confidence 444556677773 56777777889999999988764322 234578999999877 66665 567
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEE
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYST 228 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 228 (450)
|.+||.++++.... ...... .....++.++++++|+++++.
T Consensus 75 l~~~d~~~g~~~~~--------------~~~~~~-------------------------~~~~~~~di~~d~dG~l~~~~ 115 (297)
T 3g4e_A 75 FCALNWKEQSAVVL--------------ATVDND-------------------------KKNNRFNDGKVDPAGRYFAGT 115 (297)
T ss_dssp EEEEETTTTEEEEE--------------EECCTT-------------------------CSSEEEEEEEECTTSCEEEEE
T ss_pred EEEEECCCCcEEEE--------------EecCCC-------------------------CCCCCCCCEEECCCCCEEEec
Confidence 99999987632111 110000 012357889999999976654
Q ss_pred eCC---------CcEEEEecCC-CeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCc--chhhhccccchh
Q 041325 229 SWD---------RTFKIWRTSD-FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKL--RAALQVNKKHSL 296 (450)
Q Consensus 229 ~~d---------g~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~--~~~~~~~~~~~~ 296 (450)
..+ ..-.+|.+.. ++... +. ......+.++|+|+++.++++.+.++.|.+|++. ++... ....
T Consensus 116 ~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~~-~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~---~~~~ 190 (297)
T 3g4e_A 116 MAEETAPAVLERHQGALYSLFPDHHVKK-YF-DQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQIS---NRRS 190 (297)
T ss_dssp EECCSBTTBCCTTCEEEEEECTTSCEEE-EE-EEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEE---EEEE
T ss_pred CCcccccccccCCCcEEEEEECCCCEEE-Ee-eccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCccc---CcEE
Confidence 321 2334554432 33332 22 2445678999998766566777888999999873 33210 0111
Q ss_pred hhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC
Q 041325 297 VQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS 369 (450)
Q Consensus 297 ~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 369 (450)
...+......+..++++++|++.++...++.|.+||..+++.+ ..+..+...+++++|.+
T Consensus 191 ~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~-------------~~i~~p~~~~t~~~f~g 250 (297)
T 3g4e_A 191 VYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRL-------------QTVKLPVDKTTSCCFGG 250 (297)
T ss_dssp EEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEE-------------EEEECSSSBEEEEEEES
T ss_pred EEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEE-------------EEEECCCCCceEEEEeC
Confidence 2222223456788999999988888777889999999888755 33444456789999983
No 203
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.40 E-value=3.9e-10 Score=99.04 Aligned_cols=245 Identities=9% Similarity=0.031 Sum_probs=150.1
Q ss_pred cCCCceEEEEEeCCe-EEEE--------eCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCce
Q 041325 125 GNGDAVKSLVVLGDK-LFSA--------HQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNY 195 (450)
Q Consensus 125 ~h~~~v~~l~~~~~~-l~s~--------~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (450)
..-....+++|.++. ++.+ ..++.|.+||..+++...... +
T Consensus 15 ~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~---------------~--------------- 64 (314)
T 1pjx_A 15 EDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK---------------P--------------- 64 (314)
T ss_dssp CCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC---------------C---------------
T ss_pred ccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe---------------c---------------
Confidence 334567889998666 4444 678899999987763211100 0
Q ss_pred EEEeecceeeeecCCCceEEEEEccC-CCEEEEEeCCCcEEEEecCCCeEEEE-eec---ccccceEEEEEeecCCcEEE
Q 041325 196 VQVRRHKKCTWVHHVDTVSALALSSD-GSLLYSTSWDRTFKIWRTSDFRCLES-VKN---AHDDAINAIVVSKSNDGFVY 270 (450)
Q Consensus 196 ~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~---~~~~~v~~~~~~~~~~~~l~ 270 (450)
...++...+.+++++++ ++++++ +..+.|.+||.. ++.... ... .....+.++++.+++ .+++
T Consensus 65 ---------~~~~~~~~~~~i~~~~~~g~l~v~-~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g-~l~v 132 (314)
T 1pjx_A 65 ---------EVNGYGGIPAGCQCDRDANQLFVA-DMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEG-NLWI 132 (314)
T ss_dssp ---------EETTEECCEEEEEECSSSSEEEEE-ETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTS-CEEE
T ss_pred ---------ccCCCCCCCceEEEecCCCcEEEE-ECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCC-CEEE
Confidence 00013346889999998 665554 445579999998 665433 221 112458899998743 3555
Q ss_pred EEcCC---------------CcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEc----CCCCEEEEe-eCCCcEEE
Q 041325 271 TGSAD---------------TKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALS----TDGTVLYSG-ACDRSILV 330 (450)
Q Consensus 271 ~~~~d---------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~l~~g-~~dg~i~v 330 (450)
+...+ +.|..||.. ++ . ..+..+......++++ |+++.|+.+ ..++.|.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~--------~-~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~ 202 (314)
T 1pjx_A 133 TAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQ--------M-IQVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWS 202 (314)
T ss_dssp EECBCBCTTSCCCBTTSSSCEEEEEECTT-SC--------E-EEEEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEE
T ss_pred EecCcccccccccccccCCCCeEEEECCC-CC--------E-EEeccCCCCcceEEEecccCCCCCEEEEEECCCCeEEE
Confidence 55444 567777754 22 1 1111233456889999 999766555 56789999
Q ss_pred EEcC-CCceeeeCCCCCCceeeeccccCCc-cceEEEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCC
Q 041325 331 WERD-QGNYIVDGDDDSGHMVLKGALRGHT-KAILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGH 406 (450)
Q Consensus 331 wd~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h 406 (450)
||.. +++... ......+..+. .....+++++ ++.++...++.|.+||..++ +.+..+..+
T Consensus 203 ~~~~~~g~~~~--------~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g--------~~~~~~~~~ 266 (314)
T 1pjx_A 203 YDIKGPAKIEN--------KKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGG--------QPKMRIRCP 266 (314)
T ss_dssp EEEEETTEEEE--------EEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCB--------SCSEEEECS
T ss_pred EECCCCCcccc--------ceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCC--------cEeEEEeCC
Confidence 9986 343110 00112233333 4567788874 46666667889999998753 233444556
Q ss_pred CcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 407 RRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 407 ~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
...+.+++|++++.. ++++...++.|..|++
T Consensus 267 ~~~~~~i~~~~dg~~------------l~v~~~~~~~l~~~~~ 297 (314)
T 1pjx_A 267 FEKPSNLHFKPQTKT------------IFVTEHENNAVWKFEW 297 (314)
T ss_dssp SSCEEEEEECTTSSE------------EEEEETTTTEEEEEEC
T ss_pred CCCceeEEECCCCCE------------EEEEeCCCCeEEEEeC
Confidence 678999999888872 3445556688988886
No 204
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.39 E-value=5.2e-12 Score=112.11 Aligned_cols=166 Identities=11% Similarity=0.038 Sum_probs=123.2
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCe-----------EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEE
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFR-----------CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKV 280 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v 280 (450)
.++.+++++...++++|+.+ .+.+|++.+.+ ..... .+.. |..++| ++..|+++ .++.|++
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~--~lp~-V~~l~f---d~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK--EIPD-VIFVCF---HGDQVLVS-TRNALYS 110 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE--ECTT-EEEEEE---ETTEEEEE-ESSEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe--eCCC-eeEEEE---CCCEEEEE-cCCcEEE
Confidence 68999999999999999987 55569876443 11222 3455 999999 34477777 8899999
Q ss_pred EeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCcc
Q 041325 281 WKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK 360 (450)
Q Consensus 281 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (450)
||+++.. .......+...+.++.+.+. .+++++.||.|.+||+.++... .+..
T Consensus 111 ~dv~sl~--------~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~-----------------~~~~ 163 (388)
T 1xip_A 111 LDLEELS--------EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTK-----------------QLAQ 163 (388)
T ss_dssp EESSSTT--------CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEE-----------------EEEE
T ss_pred EEchhhh--------ccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccc-----------------cccC
Confidence 9987654 11123345566788777654 3888899999999999976532 1446
Q ss_pred ceEEEEEeCCeEEEEeCCCeEEEeeCCCCccccCCCcee--EEEe------c---CCCcceEEEEEEecCC
Q 041325 361 AILCLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSC--LAVL------E---GHRRPVKCLTAVVDSD 420 (450)
Q Consensus 361 ~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~--~~~~------~---~h~~~v~~l~~~~~~~ 420 (450)
.|+|++|+++-++.|..||.+++|+.... .. ...+ . +|...|.+|.|.+++.
T Consensus 164 ~Vs~v~WSpkG~~vg~~dg~i~~~~~~~~--------~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~ 226 (388)
T 1xip_A 164 NVTSFDVTNSQLAVLLKDRSFQSFAWRNG--------EMEKQFEFSLPSELEELPVEEYSPLSVTILSPQD 226 (388)
T ss_dssp SEEEEEECSSEEEEEETTSCEEEEEEETT--------EEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSE
T ss_pred CceEEEEcCCceEEEEcCCcEEEEcCCCc--------cccccceecCCcccccccCCCeeEEEEEEecCCe
Confidence 89999999887899999999999987753 22 3334 2 4788999999999887
No 205
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.35 E-value=2.9e-11 Score=107.31 Aligned_cols=187 Identities=11% Similarity=0.025 Sum_probs=122.0
Q ss_pred ceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEc
Q 041325 77 YIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKI 154 (450)
Q Consensus 77 ~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~ 154 (450)
.+..+++ ...++++|+.++ +++|+++..+.... ........ .....+.. |+.|+|.++.|+++ .++.|++||+
T Consensus 39 ~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~-~~~~~~~~-~~~~~lp~-V~~l~fd~~~L~v~-~~~~l~v~dv 113 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHIT-SDSTPLTF-KWEKEIPD-VIFVCFHGDQVLVS-TRNALYSLDL 113 (388)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHH-SSSCCCCC-SEEEECTT-EEEEEEETTEEEEE-ESSEEEEEES
T ss_pred cccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhc-cccccccc-eEEeeCCC-eeEEEECCCEEEEE-cCCcEEEEEc
Confidence 4777777 588899999875 66698654331000 00000011 11234666 99999944447776 8899999999
Q ss_pred CCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcE
Q 041325 155 DNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTF 234 (450)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 234 (450)
.+..... ....|...+.++.+.+. .++++..||.|
T Consensus 114 ~sl~~~~-------------------------------------------~~~~~~~~v~~i~~~~p--~~av~~~dG~L 148 (388)
T 1xip_A 114 EELSEFR-------------------------------------------TVTSFEKPVFQLKNVNN--TLVILNSVNDL 148 (388)
T ss_dssp SSTTCEE-------------------------------------------EEEECSSCEEEEEECSS--EEEEEETTSEE
T ss_pred hhhhccC-------------------------------------------ccceeecceeeEEecCC--CEEEEECCCCE
Confidence 8763210 11134455667666543 28888999999
Q ss_pred EEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHh---hcccceEEEE
Q 041325 235 KIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLE---KHKSAVTALA 311 (450)
Q Consensus 235 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~i~~l~ 311 (450)
.+||+.++.... +...|.+++|+|. + ++.|..||.+++|+....+............+. +|...|.++.
T Consensus 149 ~v~dl~~~~~~~-----~~~~Vs~v~WSpk--G-~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~ 220 (388)
T 1xip_A 149 SALDLRTKSTKQ-----LAQNVTSFDVTNS--Q-LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVT 220 (388)
T ss_dssp EEEETTTCCEEE-----EEESEEEEEECSS--E-EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEE
T ss_pred EEEEccCCcccc-----ccCCceEEEEcCC--c-eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEE
Confidence 999999877643 3468999999973 3 678999999999987655421000010111222 3678899999
Q ss_pred EcCCCCEEEE
Q 041325 312 LSTDGTVLYS 321 (450)
Q Consensus 312 ~~~~~~~l~~ 321 (450)
|.+++.++++
T Consensus 221 wl~~~~flv~ 230 (388)
T 1xip_A 221 ILSPQDFLAV 230 (388)
T ss_dssp ESSSSEEEEE
T ss_pred EecCCeEEEE
Confidence 9999998887
No 206
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.35 E-value=2.9e-09 Score=96.07 Aligned_cols=278 Identities=11% Similarity=0.105 Sum_probs=163.4
Q ss_pred EEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCce
Q 041325 80 SLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTS 159 (450)
Q Consensus 80 ~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~ 159 (450)
....++..++.++.+|.|..+|.++++............. ...........+...++.++.++.++.|..+|.++++.
T Consensus 48 ~p~v~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~ 125 (376)
T 3q7m_A 48 HPALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGW--FSKEPALLSGGVTVSGGHVYIGSEKAQVYALNTSDGTV 125 (376)
T ss_dssp CCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC---C--CSCCCCCEEEEEEEETTEEEEEETTSEEEEEETTTCCE
T ss_pred ccEEECCEEEEEcCCCeEEEEEccCCceeeeecCcccccc--ccccCcccccCceEeCCEEEEEcCCCEEEEEECCCCCE
Confidence 3344788888888899999999999987765332211000 00001112244555677799999999999999998854
Q ss_pred eEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 041325 160 AYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRT 239 (450)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 239 (450)
........ . ....++ . .+..++.++.++.|..+|.
T Consensus 126 ~W~~~~~~----------------~-----------------------~~~~p~----~--~~~~v~v~~~~g~l~~~d~ 160 (376)
T 3q7m_A 126 AWQTKVAG----------------E-----------------------ALSRPV----V--SDGLVLIHTSNGQLQALNE 160 (376)
T ss_dssp EEEEECSS----------------C-----------------------CCSCCE----E--ETTEEEEECTTSEEEEEET
T ss_pred EEEEeCCC----------------c-----------------------eEcCCE----E--ECCEEEEEcCCCeEEEEEC
Confidence 22111100 0 000111 1 1446778888999999999
Q ss_pred CCCeEEEEeecccccce------EEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhh-h--hHhhcccceEEE
Q 041325 240 SDFRCLESVKNAHDDAI------NAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLV-Q--TLEKHKSAVTAL 310 (450)
Q Consensus 240 ~~~~~~~~~~~~~~~~v------~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~-~--~~~~~~~~i~~l 310 (450)
.+++.+...... ..+ ...... ++.++.++.++.+..+|..+++..-....... . .+..........
T Consensus 161 ~tG~~~W~~~~~--~~~~~~~~~~~~~~~---~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p 235 (376)
T 3q7m_A 161 ADGAVKWTVNLD--MPSLSLRGESAPTTA---FGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTP 235 (376)
T ss_dssp TTCCEEEEEECC--C-----CCCCCCEEE---TTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCC
T ss_pred CCCcEEEEEeCC--CCceeecCCCCcEEE---CCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCc
Confidence 999988777621 111 222222 34788888899999999987762111000000 0 000000000011
Q ss_pred EEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCCCc
Q 041325 311 ALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSV 390 (450)
Q Consensus 311 ~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~ 390 (450)
.. .+..++.++.++.|..+|..+++.+.... ......+...++.++.++.++.|..+|..++
T Consensus 236 ~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~---------------~~~~~~~~~~~~~l~~~~~~g~l~~~d~~tG- 297 (376)
T 3q7m_A 236 VV--VNGVVFALAYNGNLTALDLRSGQIMWKRE---------------LGSVNDFIVDGNRIYLVDQNDRVMALTIDGG- 297 (376)
T ss_dssp EE--ETTEEEEECTTSCEEEEETTTCCEEEEEC---------------CCCEEEEEEETTEEEEEETTCCEEEEETTTC-
T ss_pred EE--ECCEEEEEecCcEEEEEECCCCcEEeecc---------------CCCCCCceEECCEEEEEcCCCeEEEEECCCC-
Confidence 11 34678888889999999999988663211 1223456667888999999999999999876
Q ss_pred cccCCCceeEEEec-CCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 391 TDHQKGYSCLAVLE-GHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 391 ~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+.+.... .....+..... .+. .|+.++.+|.|.++|.
T Consensus 298 -------~~~w~~~~~~~~~~~~~~~--~~~-------------~l~v~~~~g~l~~~d~ 335 (376)
T 3q7m_A 298 -------VTLWTQSDLLHRLLTSPVL--YNG-------------NLVVGDSEGYLHWINV 335 (376)
T ss_dssp -------CEEEEECTTTTSCCCCCEE--ETT-------------EEEEECTTSEEEEEET
T ss_pred -------cEEEeecccCCCcccCCEE--ECC-------------EEEEEeCCCeEEEEEC
Confidence 2333332 11112222222 233 6788888898988875
No 207
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.35 E-value=6.3e-09 Score=90.42 Aligned_cols=223 Identities=12% Similarity=0.061 Sum_probs=138.9
Q ss_pred CCCceEEEEEeCCe---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecc
Q 041325 126 NGDAVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHK 202 (450)
Q Consensus 126 h~~~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (450)
+..-..+..|+++. +++...++.|..||..++....
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~----------------------------------------- 49 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR----------------------------------------- 49 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE-----------------------------------------
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE-----------------------------------------
Confidence 33455678888632 5566678899999998763210
Q ss_pred eeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecc---cccceEEEEEeecCCcEEEEEcC-----
Q 041325 203 KCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNA---HDDAINAIVVSKSNDGFVYTGSA----- 274 (450)
Q Consensus 203 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~----- 274 (450)
......+.+++++++|+++++ . ++.|.+||..+++........ ....++.+++.|++. ++++...
T Consensus 50 ----~~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~ 122 (297)
T 3g4e_A 50 ----VTMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAP 122 (297)
T ss_dssp ----EECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBT
T ss_pred ----EeCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCccccc
Confidence 012346889999999995554 4 578999999887654333211 234578899987444 4443321
Q ss_pred ----CCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEE-eeCCCcEEEEEc--CCCceeeeCCCCCC
Q 041325 275 ----DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYS-GACDRSILVWER--DQGNYIVDGDDDSG 347 (450)
Q Consensus 275 ----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~-g~~dg~i~vwd~--~~~~~~~~~~~~~~ 347 (450)
...-.+|.+.... ....+.........++|+|+++.|+. .+.++.|.+|++ .+++..
T Consensus 123 ~~~~~~~~~l~~~d~~g--------~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~-------- 186 (297)
T 3g4e_A 123 AVLERHQGALYSLFPDH--------HVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQIS-------- 186 (297)
T ss_dssp TBCCTTCEEEEEECTTS--------CEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEE--------
T ss_pred ccccCCCcEEEEEECCC--------CEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCccc--------
Confidence 1223455443211 01111223345688999999987654 555789999997 344321
Q ss_pred ceeeeccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEE-ecCC
Q 041325 348 HMVLKGALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAV-VDSD 420 (450)
Q Consensus 348 ~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~ 420 (450)
.......+..+......++++ +++.++...++.|..||..++ +.+..+..+...+++++|. |+++
T Consensus 187 ~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG--------~~~~~i~~p~~~~t~~~f~g~d~~ 254 (297)
T 3g4e_A 187 NRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG--------KRLQTVKLPVDKTTSCCFGGKNYS 254 (297)
T ss_dssp EEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC--------CEEEEEECSSSBEEEEEEESGGGC
T ss_pred CcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc--------eEEEEEECCCCCceEEEEeCCCCC
Confidence 001111222333456778887 446666667788999998864 5667777777789999998 7776
No 208
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.33 E-value=8.8e-10 Score=97.43 Aligned_cols=281 Identities=10% Similarity=0.061 Sum_probs=165.8
Q ss_pred eCCEEEEeeC-----CCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEe----------CC
Q 041325 84 AGKLLYGGSS-----NGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAH----------QD 146 (450)
Q Consensus 84 d~~~l~tgs~-----dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~----------~d 146 (450)
|++.++.... ++.|.+.|..+++.+.... .+. .+ . ++++|++ ++.+. .+
T Consensus 43 d~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~-----------vG~-~P-~-va~spDG~~lyVan~~~~r~~~G~~~ 108 (386)
T 3sjl_D 43 DARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMID-----------GGF-LP-N-PVVADDGSFIAHASTVFSRIARGERT 108 (386)
T ss_dssp CTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEE-----------ECS-SC-E-EEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred CCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEE-----------CCC-CC-c-EEECCCCCEEEEEcccccccccCCCC
Confidence 5666666654 6799999999988776522 122 23 4 8999887 55554 36
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLY 226 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 226 (450)
+.|.+||..+.+. +..++..... . .........++++|||++++
T Consensus 109 ~~VsviD~~t~~v----------------~~~I~v~~g~-------------------r-~~~g~~P~~~a~spDGk~ly 152 (386)
T 3sjl_D 109 DYVEVFDPVTLLP----------------TADIELPDAP-------------------R-FLVGTYPWMTSLTPDGKTLL 152 (386)
T ss_dssp EEEEEECTTTCCE----------------EEEEEETTCC-------------------C-CCBSCCGGGEEECTTSSEEE
T ss_pred CEEEEEECCCCeE----------------EEEEECCCcc-------------------c-cccCCCCceEEEcCCCCEEE
Confidence 7899999998843 2222110000 0 00111345689999999998
Q ss_pred EEeC--CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc-hhhhccccchhhhhHhhc
Q 041325 227 STSW--DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR-AALQVNKKHSLVQTLEKH 303 (450)
Q Consensus 227 ~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~ 303 (450)
++.. ++.|.++|+.+++.+..+.... . ..+.|.+...+++.+.||.+.+.++.. ++... ... ..+...
T Consensus 153 Van~~~~~~VsVID~~t~~vv~tI~v~g--~---~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~--~~~--~~~~~~ 223 (386)
T 3sjl_D 153 FYQFSPAPAVGVVDLEGKAFKRMLDVPD--C---YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEI--THT--EVFHPE 223 (386)
T ss_dssp EEECSSSCEEEEEETTTTEEEEEEECCS--E---EEEEEEETTEEEEEETTSCEEEEECCSSSCCEE--EEC--CCCSCT
T ss_pred EEEcCCCCeEEEEECCCCcEEEEEECCC--c---ceeecCCCceeEEECCCCCEEEEECCCCCeEEE--eec--ceeccc
Confidence 8864 6899999999999999886322 1 223344555677888899999999875 44210 000 111111
Q ss_pred ccceE-EEEEc-CCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeec----cccCCccceEEEEEe--CCeEEEE
Q 041325 304 KSAVT-ALALS-TDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKG----ALRGHTKAILCLAVV--SNLLFSG 375 (450)
Q Consensus 304 ~~~i~-~l~~~-~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~~--~~~l~s~ 375 (450)
...+. ...|. ++|++++ .+.+|.|++.|+.+...... ....... ...-.......++++ ++.++..
T Consensus 224 ~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~-----~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~ 297 (386)
T 3sjl_D 224 DEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFL-----PAVEALTEAERADGWRPGGWQQVAYHRALDRIYLL 297 (386)
T ss_dssp TSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEEC-----CCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEE
T ss_pred cccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceee-----cceeccccccccccccCCCcceeeECCCCCeEEEE
Confidence 12221 24564 6776555 45589999999976542110 0000000 000011122234444 4454444
Q ss_pred eC----------CCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEE-cccCCcE
Q 041325 376 SS----------DNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYS-GSLDCEI 444 (450)
Q Consensus 376 ~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s-~~~Dg~i 444 (450)
.. .+.|.+.|+.+. +.+..+.- ...+.+|++++|++. +|++ ...++.|
T Consensus 298 ~~~~~~~~hk~~~~~V~viD~~t~--------kv~~~i~v-g~~~~~lavs~D~~~------------~ly~tn~~~~~V 356 (386)
T 3sjl_D 298 VDQRDEWRHKTASRFVVVLDAKTG--------ERLAKFEM-GHEIDSINVSQDEKP------------LLYALSTGDKTL 356 (386)
T ss_dssp EEECCTTCTTSCEEEEEEEETTTC--------CEEEEEEE-EEEECEEEECSSSSC------------EEEEEETTTTEE
T ss_pred eccccccccCCCCCEEEEEECCCC--------eEEEEEEC-CCCcceEEECCCCCe------------EEEEEcCCCCeE
Confidence 32 257899999874 55555532 246889999999852 4444 5668999
Q ss_pred EEEEeC
Q 041325 445 KIWQIR 450 (450)
Q Consensus 445 ~iw~l~ 450 (450)
.++|.+
T Consensus 357 sViD~~ 362 (386)
T 3sjl_D 357 YIHDAE 362 (386)
T ss_dssp EEEETT
T ss_pred EEEECC
Confidence 999863
No 209
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.33 E-value=1.6e-09 Score=98.49 Aligned_cols=258 Identities=12% Similarity=0.071 Sum_probs=150.1
Q ss_pred cceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCC--eE
Q 041325 76 SYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDH--KI 149 (450)
Q Consensus 76 ~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg--~i 149 (450)
.....|++ +++++++...++.|++||.+++...... .. ..... ++|+++. |+++..++ .|
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~------------~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I 196 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVH------------PG-FKGGK-PAVTKDKQRVYSIGWEGTHTV 196 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEE------------ET-CCBCB-CEECTTSSEEEEEBSSTTCEE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEee------------cc-CCCCc-eeEecCCCcEEEEecCCCceE
Confidence 35778888 5777777777899999999887765441 12 12233 8888765 77777765 78
Q ss_pred EEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe
Q 041325 150 RVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS 229 (450)
Q Consensus 150 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 229 (450)
.+|+........ .+.... ......+.+++++|++..|+.+.
T Consensus 197 ~~~d~~~~~~~~-------------~~g~~~--------------------------~~~~~~p~~iav~p~~g~lyv~d 237 (409)
T 3hrp_A 197 YVYMKASGWAPT-------------RIGQLG--------------------------STFSGKIGAVALDETEEWLYFVD 237 (409)
T ss_dssp EEEEGGGTTCEE-------------EEEECC--------------------------TTSCSCCCBCEECTTSSEEEEEC
T ss_pred EEEEcCCCceeE-------------Eeeecc--------------------------chhcCCcEEEEEeCCCCeEEEEE
Confidence 888876542100 000000 01234577899999544555577
Q ss_pred CCCcEEEEecCCCeEEEEe---ecccccce-E-EEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccc-----hhhhh
Q 041325 230 WDRTFKIWRTSDFRCLESV---KNAHDDAI-N-AIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKH-----SLVQT 299 (450)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~---~~~~~~~v-~-~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-----~~~~~ 299 (450)
.++.|..||..++.....- .......- . .++++|.+..++++-..++.|+.|+............ ..-..
T Consensus 238 ~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~ 317 (409)
T 3hrp_A 238 SNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQDGLR 317 (409)
T ss_dssp TTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBCEEG
T ss_pred CCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCCCcc
Confidence 7889999999876533220 11122222 3 8999986666777778889999998753210000000 00000
Q ss_pred HhhcccceEEEEEcCCCCEEEEee-CCCcEEEEEcCCCceeeeCCC-CCCceeeeccccCCccceEEEEEeC--CeEEEE
Q 041325 300 LEKHKSAVTALALSTDGTVLYSGA-CDRSILVWERDQGNYIVDGDD-DSGHMVLKGALRGHTKAILCLAVVS--NLLFSG 375 (450)
Q Consensus 300 ~~~~~~~i~~l~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~ 375 (450)
....-.....++++|+|+++++-. .++.|+.|++.+++....... .......-......-.....+++++ +++++-
T Consensus 318 ~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad 397 (409)
T 3hrp_A 318 EEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAE 397 (409)
T ss_dssp GGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEE
T ss_pred cccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEE
Confidence 001123578999999999777777 789999999877753311100 0000000000011123467788875 366666
Q ss_pred eCCCeEEEeeC
Q 041325 376 SSDNTIRIWRR 386 (450)
Q Consensus 376 ~~dg~v~iwd~ 386 (450)
..+++|+.+++
T Consensus 398 ~~n~~Ir~i~~ 408 (409)
T 3hrp_A 398 AWGKAIRKYAV 408 (409)
T ss_dssp STTCEEEEEEE
T ss_pred CCCCeEEEEEe
Confidence 66777777654
No 210
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.30 E-value=1.4e-09 Score=98.88 Aligned_cols=250 Identities=10% Similarity=0.103 Sum_probs=151.6
Q ss_pred CceEEEEEeCCe-EE-EEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceee
Q 041325 128 DAVKSLVVLGDK-LF-SAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCT 205 (450)
Q Consensus 128 ~~v~~l~~~~~~-l~-s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (450)
.....|++.++. |+ +...++.|++||.+++......
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~------------------------------------------ 168 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVH------------------------------------------ 168 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEE------------------------------------------
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEee------------------------------------------
Confidence 367889998766 44 4455689999999876321110
Q ss_pred eecCCCceEEEEEccCCCEEEEEeCCC--cEEEEecCCCeEEEEe---ecccccceEEEEEeecCCcEEEEEcCCCcEEE
Q 041325 206 WVHHVDTVSALALSSDGSLLYSTSWDR--TFKIWRTSDFRCLESV---KNAHDDAINAIVVSKSNDGFVYTGSADTKIKV 280 (450)
Q Consensus 206 ~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v 280 (450)
....... ++|+++++.|+++..++ .|.+|+...+.....+ .......+.+++++|.+. .|+.+..++.|+.
T Consensus 169 --~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g-~lyv~d~~~~I~~ 244 (409)
T 3hrp_A 169 --PGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEE-WLYFVDSNKNFGR 244 (409)
T ss_dssp --ETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSS-EEEEECTTCEEEE
T ss_pred --ccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCC-eEEEEECCCcEEE
Confidence 0111233 89999999988888766 7888888765443333 112446678899997444 5555777889999
Q ss_pred EeCcchhhhccccchhhhhHhhcccce-E-EEEEcCC-CCEEEEeeCCCcEEEEEcCCCceeeeCCC-CCCceeeecccc
Q 041325 281 WKKLRAALQVNKKHSLVQTLEKHKSAV-T-ALALSTD-GTVLYSGACDRSILVWERDQGNYIVDGDD-DSGHMVLKGALR 356 (450)
Q Consensus 281 wd~~~~~~~~~~~~~~~~~~~~~~~~i-~-~l~~~~~-~~~l~~g~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~ 356 (450)
||...+........ ...+....- . .++|+|+ +.++++-..++.|+.|+............ ...... -....
T Consensus 245 ~d~~~~~~~~~~~~----~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~~~~~g~~~~~g~~d-g~~~~ 319 (409)
T 3hrp_A 245 FNVKTQEVTLIKQL----ELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGECEWFCGSATQKTVQD-GLREE 319 (409)
T ss_dssp EETTTCCEEEEEEC----CCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCEEEEEECTTCCSCBC-EEGGG
T ss_pred EECCCCCEEEEecc----cccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCEEEEEeCCCCCCcCC-Ccccc
Confidence 99865541110000 011111111 3 8999995 55666666788999999764321111000 000000 00000
Q ss_pred CCccceEEEEEeC--CeEEEEe-CCCeEEEeeCCCCccccCCCceeEEEecCC---------------CcceEEEEEEec
Q 041325 357 GHTKAILCLAVVS--NLLFSGS-SDNTIRIWRRSSSVTDHQKGYSCLAVLEGH---------------RRPVKCLTAVVD 418 (450)
Q Consensus 357 ~~~~~v~~~~~~~--~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h---------------~~~v~~l~~~~~ 418 (450)
..-.....+++++ +++++-. .++.|+.|++.++ . +..+.++ -.....|++.++
T Consensus 320 ~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G--------~-v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~ 390 (409)
T 3hrp_A 320 ALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG--------Y-VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGE 390 (409)
T ss_dssp CBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT--------E-EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSS
T ss_pred cEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC--------E-EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCC
Confidence 1123457888874 4666666 7899999997654 1 2333332 245789999999
Q ss_pred CCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 419 SDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 419 ~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
+. ++++-..++.|+.++++
T Consensus 391 g~-------------lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 391 GG-------------YWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp SE-------------EEEEESTTCEEEEEEEC
T ss_pred CC-------------EEEEECCCCeEEEEEeC
Confidence 77 88888888999988874
No 211
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.30 E-value=1.4e-08 Score=88.38 Aligned_cols=237 Identities=13% Similarity=0.071 Sum_probs=153.0
Q ss_pred CCCceEEEEEeCCe-EEEEe-CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecce
Q 041325 126 NGDAVKSLVVLGDK-LFSAH-QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKK 203 (450)
Q Consensus 126 h~~~v~~l~~~~~~-l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (450)
....+.++++.+++ ++.+. .++.|.+||.. ++.... .++
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~---------------~~~----------------------- 58 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEF---------------EVP----------------------- 58 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEE---------------ECS-----------------------
T ss_pred CCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEE---------------ECC-----------------------
Confidence 34578899998766 55554 57899999987 422100 000
Q ss_pred eeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeC
Q 041325 204 CTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKK 283 (450)
Q Consensus 204 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 283 (450)
.....+.+++++++++++++...++.|..||.. ++............+..+++.+. ..++++...++.|..||.
T Consensus 59 ----~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~-g~l~v~~~~~~~i~~~~~ 132 (300)
T 2qc5_A 59 ----TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLN-GDIWFTQLNGDRIGKLTA 132 (300)
T ss_dssp ----STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECST-TCEEEEETTTTEEEEECT
T ss_pred ----CCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCC-CCEEEEccCCCeEEEECC
Confidence 123468899999999887777668899999988 55432222123467889999863 346666666788999997
Q ss_pred cchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceE
Q 041325 284 LRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAIL 363 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 363 (450)
. ++.. ...+......+..+++.+++++.++...++.|..||. +++... .....+...+.
T Consensus 133 ~-g~~~-------~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~------------~~~~~~~~~~~ 191 (300)
T 2qc5_A 133 D-GTIY-------EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE------------YPLPTNAAAPV 191 (300)
T ss_dssp T-SCEE-------EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE------------EECSSTTCCEE
T ss_pred C-CCEE-------EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE------------eeCCCCCCCcc
Confidence 6 3311 0011123456889999999997776666788999998 554321 11222334577
Q ss_pred EEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccC
Q 041325 364 CLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLD 441 (450)
Q Consensus 364 ~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~D 441 (450)
++++++ ++.++....+.|.+||.... .....+..+...+.++++.+++. ++++...+
T Consensus 192 ~i~~d~~g~l~v~~~~~~~i~~~~~~g~--------~~~~~~~~~~~~~~~i~~d~~g~-------------l~v~~~~~ 250 (300)
T 2qc5_A 192 GITSGNDGALWFVEIMGNKIGRITTTGE--------ISEYDIPTPNARPHAITAGKNSE-------------IWFTEWGA 250 (300)
T ss_dssp EEEECTTSSEEEEETTTTEEEEECTTCC--------EEEEECSSTTCCEEEEEECSTTC-------------EEEEETTT
T ss_pred eEEECCCCCEEEEccCCCEEEEEcCCCc--------EEEEECCCCCCCceEEEECCCCC-------------EEEeccCC
Confidence 888874 35555556678999997321 11122333456788999999887 66666667
Q ss_pred CcEEEEEe
Q 041325 442 CEIKIWQI 449 (450)
Q Consensus 442 g~i~iw~l 449 (450)
+.|..|+.
T Consensus 251 ~~i~~~~~ 258 (300)
T 2qc5_A 251 NQIGRITN 258 (300)
T ss_dssp TEEEEECT
T ss_pred CeEEEECC
Confidence 77887763
No 212
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.29 E-value=3.6e-10 Score=111.44 Aligned_cols=198 Identities=17% Similarity=0.081 Sum_probs=126.2
Q ss_pred CceEEEEEccCCCEEEEEeCC-----CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCC---------
Q 041325 211 DTVSALALSSDGSLLYSTSWD-----RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADT--------- 276 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg--------- 276 (450)
..+..++|+|||++|+.+..+ ..|++||+.+++.+.... +...+..++|+|+ + .|+.+..++
T Consensus 163 ~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~--~~~~~~~~~wspD-~-~l~~~~~~~~~~~~~~~~ 238 (741)
T 1yr2_A 163 TALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADEL--KWVKFSGLAWLGN-D-ALLYSRFAEPKEGQAFQA 238 (741)
T ss_dssp EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEE--EEEESCCCEESTT-S-EEEEEECCCC--------
T ss_pred EEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccC--CCceeccEEEECC-C-EEEEEEecCccccccccc
Confidence 467889999999999887643 469999999998765422 2233467899996 5 555554443
Q ss_pred -----cEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCC-----cEEEEEcCCC--ceeeeCCC
Q 041325 277 -----KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDR-----SILVWERDQG--NYIVDGDD 344 (450)
Q Consensus 277 -----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg-----~i~vwd~~~~--~~~~~~~~ 344 (450)
.|++|++.++.. ....+.....+...+..+.|+|||++|+..+.++ .|++||+.++ +..
T Consensus 239 ~~~~~~v~~~~lgt~~~----~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~----- 309 (741)
T 1yr2_A 239 LNYNQTVWLHRLGTPQS----ADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPV----- 309 (741)
T ss_dssp CCCCCEEEEEETTSCGG----GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCC-----
T ss_pred CCCCCEEEEEECCCCch----hCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCccc-----
Confidence 388999865541 1112222223334588999999999988877544 8999999865 201
Q ss_pred CCCceeeeccccCCccc-eEEEEEeCCeEEEEeC----CCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecC
Q 041325 345 DSGHMVLKGALRGHTKA-ILCLAVVSNLLFSGSS----DNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDS 419 (450)
Q Consensus 345 ~~~~~~~~~~~~~~~~~-v~~~~~~~~~l~s~~~----dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~ 419 (450)
..+..+... ...+..+++.|+..+. ++.|.+||+.++. ......+..+...+..+.+. ++
T Consensus 310 --------~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~------~~~~~l~~~~~~~l~~~~~~-~~ 374 (741)
T 1yr2_A 310 --------TALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGST------PRFDTVVPESKDNLESVGIA-GN 374 (741)
T ss_dssp --------EEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSS------CEEEEEECCCSSEEEEEEEE-BT
T ss_pred --------EEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCc------cccEEEecCCCCeEEEEEEE-CC
Confidence 112222222 2233345776666665 3459999987531 12233334455567777776 44
Q ss_pred CCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 420 DYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 420 ~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
. ++++...|+..+||.+
T Consensus 375 ~-------------lv~~~~~dg~~~l~~~ 391 (741)
T 1yr2_A 375 R-------------LFASYIHDAKSQVLAF 391 (741)
T ss_dssp E-------------EEEEEEETTEEEEEEE
T ss_pred E-------------EEEEEEECCEEEEEEE
Confidence 4 8889999998888854
No 213
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.26 E-value=3.8e-09 Score=102.33 Aligned_cols=322 Identities=11% Similarity=0.073 Sum_probs=176.7
Q ss_pred CCCccceeeeEEeecCCCc---------ceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCC
Q 041325 58 PAASEHQCSATLKVKGNSS---------YIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGD 128 (450)
Q Consensus 58 ~~~~~~~~~~~l~~~~h~~---------~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 128 (450)
....+++.+-+++...... ....+++++..++.++.|+.|..+|..+++.+.......... ...
T Consensus 92 lD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~-------~~~ 164 (677)
T 1kb0_A 92 IDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQK-------GSL 164 (677)
T ss_dssp EETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCC-------SSC
T ss_pred EECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcC-------cCc
Confidence 3445666666666322211 113455678899999999999999999999877644320000 000
Q ss_pred ce-EEEEEeCCeEEEEeC------CCeEEEEEcCCCceeEEeccCcccc-cceeeeeeccCCCcceeEeeecCceEEEee
Q 041325 129 AV-KSLVVLGDKLFSAHQ------DHKIRVWKIDNNTSAYYSTSGKLKN-KYYERIATLPTLNDRFTKCFLANNYVQVRR 200 (450)
Q Consensus 129 ~v-~~l~~~~~~l~s~~~------dg~i~iw~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (450)
.+ .......+.++.++. +|.|+.+|..+++............ ...... ... .. ...+...
T Consensus 165 ~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~-~~~---~g-~~~w~~~------- 232 (677)
T 1kb0_A 165 TITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDE-SMK---RA-ARTWDPS------- 232 (677)
T ss_dssp BCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSH-HHH---HH-HTTSCGG-------
T ss_pred ccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccc-ccc---cc-ccccccc-------
Confidence 11 111233556666654 7999999999996644332211100 000000 000 00 0000000
Q ss_pred cceeeeecCCCceEEEEEccCCCEEEEEeCCC-------------------cEEEEecCCCeEEEEeecccc--------
Q 041325 201 HKKCTWVHHVDTVSALALSSDGSLLYSTSWDR-------------------TFKIWRTSDFRCLESVKNAHD-------- 253 (450)
Q Consensus 201 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~-------- 253 (450)
.......+.......+++++++.+++.+..++ .|..+|..+++.+..++..+.
T Consensus 233 g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~ 312 (677)
T 1kb0_A 233 GKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTST 312 (677)
T ss_dssp GCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCC
T ss_pred CceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccC
Confidence 00000001122234678888888888877654 499999999999888763222
Q ss_pred cceEEEEEeecCC--cEEEEEcCCCcEEEEeCcchhhhccccchhhh---hH--------------hhcc----------
Q 041325 254 DAINAIVVSKSND--GFVYTGSADTKIKVWKKLRAALQVNKKHSLVQ---TL--------------EKHK---------- 304 (450)
Q Consensus 254 ~~v~~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~---~~--------------~~~~---------- 304 (450)
.....+....++. ..++.++.+|.++++|.++++........... .+ .+..
T Consensus 313 ~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~ 392 (677)
T 1kb0_A 313 QPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGA 392 (677)
T ss_dssp SCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCS
T ss_pred CCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccc
Confidence 1122222222222 47899999999999999888732111100000 00 0000
Q ss_pred cceEEEEEcCCCCEEEEeeCC-------------------------------------------CcEEEEEcCCCceeee
Q 041325 305 SAVTALALSTDGTVLYSGACD-------------------------------------------RSILVWERDQGNYIVD 341 (450)
Q Consensus 305 ~~i~~l~~~~~~~~l~~g~~d-------------------------------------------g~i~vwd~~~~~~~~~ 341 (450)
..-..++++|++.++++...+ |.|..||+.+++.+..
T Consensus 393 ~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~ 472 (677)
T 1kb0_A 393 HNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWS 472 (677)
T ss_dssp SCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEE
T ss_pred cCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEee
Confidence 001257889988888876432 7799999999886632
Q ss_pred CCCCCCceeeeccccCCccceE--EEEEeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCC-CcceEEEEEEec
Q 041325 342 GDDDSGHMVLKGALRGHTKAIL--CLAVVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGH-RRPVKCLTAVVD 418 (450)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~v~--~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h-~~~v~~l~~~~~ 418 (450)
... ..++. .+...+++++.++.||.+++||..++ +.+..+... .....-+.|..+
T Consensus 473 ~~~--------------~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG--------~~lw~~~~~~~~~~~p~~y~~~ 530 (677)
T 1kb0_A 473 VEH--------------VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATG--------EKLWEAPTGTGVVAAPSTYMVD 530 (677)
T ss_dssp EEE--------------SSSCCCCEEEETTTEEEEECTTSEEEEEETTTC--------CEEEEEECSSCCCSCCEEEEET
T ss_pred cCC--------------CCCCcCcceEeCCCEEEEECCCCcEEEEECCCC--------ceeeeeeCCCCcccCCEEEEeC
Confidence 111 11111 23345778888999999999999986 555555432 222334556677
Q ss_pred CC
Q 041325 419 SD 420 (450)
Q Consensus 419 ~~ 420 (450)
++
T Consensus 531 G~ 532 (677)
T 1kb0_A 531 GR 532 (677)
T ss_dssp TE
T ss_pred CE
Confidence 76
No 214
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.26 E-value=1.3e-08 Score=89.61 Aligned_cols=217 Identities=12% Similarity=0.039 Sum_probs=135.5
Q ss_pred ceEEEEE--e-CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEE
Q 041325 77 YIPSLAI--A-GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVW 152 (450)
Q Consensus 77 ~v~~~~~--d-~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw 152 (450)
...+..| + +.++++...++.|..||.++++.... .....+.++++.+++ ++.++.+ .|.+|
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~--------------~~~~~v~~i~~~~dg~l~v~~~~-gl~~~ 114 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTVH--------------ALPFMGSALAKISDSKQLIASDD-GLFLR 114 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEE--------------ECSSCEEEEEEEETTEEEEEETT-EEEEE
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEE--------------ECCCcceEEEEeCCCeEEEEECC-CEEEE
Confidence 4566777 3 45677777789999999987654322 123578999998766 6666654 49999
Q ss_pred EcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeC--
Q 041325 153 KIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSW-- 230 (450)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-- 230 (450)
|.++++.... ...... .....+.+++++++|+++++...
T Consensus 115 d~~~g~~~~~--------------~~~~~~-------------------------~~~~~~~~i~~d~~G~l~v~~~~~~ 155 (326)
T 2ghs_A 115 DTATGVLTLH--------------AELESD-------------------------LPGNRSNDGRMHPSGALWIGTMGRK 155 (326)
T ss_dssp ETTTCCEEEE--------------ECSSTT-------------------------CTTEEEEEEEECTTSCEEEEEEETT
T ss_pred ECCCCcEEEE--------------eeCCCC-------------------------CCCCCCCCEEECCCCCEEEEeCCCc
Confidence 9877642111 000000 01235789999999997665442
Q ss_pred ----CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCc--ch-hhhccccchhhhhHhhc
Q 041325 231 ----DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKL--RA-ALQVNKKHSLVQTLEKH 303 (450)
Q Consensus 231 ----dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~--~~-~~~~~~~~~~~~~~~~~ 303 (450)
.+.|..++ +++... +. ........++|+|+++.++++...++.|.+||+. ++ ... .......+...
T Consensus 156 ~~~~~~~l~~~~--~g~~~~-~~-~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~---~~~~~~~~~~~ 228 (326)
T 2ghs_A 156 AETGAGSIYHVA--KGKVTK-LF-ADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG---KAEVFIDSTGI 228 (326)
T ss_dssp CCTTCEEEEEEE--TTEEEE-EE-EEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS---CCEEEEECTTS
T ss_pred CCCCceEEEEEe--CCcEEE-ee-CCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc---CceEEEECCCC
Confidence 24555556 455433 22 2334567899998665556666778899999985 33 210 00011112223
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe
Q 041325 304 KSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV 368 (450)
Q Consensus 304 ~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 368 (450)
...+..++++++|++.++...++.|.+||. +++.+ ..+..+...+++++|.
T Consensus 229 ~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~-------------~~i~~~~~~~~~~af~ 279 (326)
T 2ghs_A 229 KGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHI-------------ARYEVPGKQTTCPAFI 279 (326)
T ss_dssp SSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEE-------------EEEECSCSBEEEEEEE
T ss_pred CCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEE-------------EEEECCCCCcEEEEEe
Confidence 345678999999988777767789999998 45433 2233344568999997
No 215
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.24 E-value=4.7e-09 Score=94.54 Aligned_cols=281 Identities=11% Similarity=0.050 Sum_probs=167.9
Q ss_pred eCCEEEEeeC-C----CcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEe----------CC
Q 041325 84 AGKLLYGGSS-N----GEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAH----------QD 146 (450)
Q Consensus 84 d~~~l~tgs~-d----g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~----------~d 146 (450)
++++++.... + +.|.+.|..+.+.+.... .+. .+ .+++++++ ++.+. .+
T Consensus 83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~-----------vG~-~P--gia~SpDgk~lyVan~~~~~~~~G~~~ 148 (426)
T 3c75_H 83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTD-----------GGF-LP--HPVAAEDGSFFAQASTVFERIARGKRT 148 (426)
T ss_dssp CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEE-----------ECS-SC--EEEECTTSSCEEEEEEEEEETTEEEEE
T ss_pred CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEE-----------CCC-CC--ceEECCCCCEEEEEeccccccccCCCC
Confidence 5665555544 2 699999999998776622 122 34 79999887 55554 46
Q ss_pred CeEEEEEcCCCceeEEeccCcccccceeeeeeccCC-CcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEE
Q 041325 147 HKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTL-NDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLL 225 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 225 (450)
+.|.++|..+.+.. ..++.. ..++ ........+.++|||+++
T Consensus 149 ~~VsviD~~t~~vv----------------~~I~v~g~~r~---------------------~~g~~P~~~~~spDGk~l 191 (426)
T 3c75_H 149 DYVEVFDPVTFLPI----------------ADIELPDAPRF---------------------LVGTYQWMNALTPDNKNL 191 (426)
T ss_dssp EEEEEECTTTCCEE----------------EEEEETTCCCC---------------------CBSCCGGGSEECTTSSEE
T ss_pred CEEEEEECCCCcEE----------------EEEECCCcccc---------------------ccCCCcceEEEcCCCCEE
Confidence 78999999988432 222110 0000 001134568899999999
Q ss_pred EEEeC--CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhc
Q 041325 226 YSTSW--DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKH 303 (450)
Q Consensus 226 ~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 303 (450)
+++.. ++.|.+.|+.+++.+..+.... . ....|.+...+++.+.||.+.+.+...++..... . ..+...
T Consensus 192 yV~n~~~~~~VsVID~~t~kvv~~I~v~g--~---~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~--~--~~~~v~ 262 (426)
T 3c75_H 192 LFYQFSPAPAVGVVDLEGKTFDRMLDVPD--C---YHIFPASPTVFYMNCRDGSLARVDFADGETKVTN--T--EVFHTE 262 (426)
T ss_dssp EEEECSSSCEEEEEETTTTEEEEEEECCS--E---EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE--C--CCCSCT
T ss_pred EEEecCCCCeEEEEECCCCeEEEEEEcCC--c---eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe--e--eeeccC
Confidence 98874 5789999999999998887322 1 3344445556777778898888887444311000 0 111111
Q ss_pred ccc-eEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeee--c--cccCCccceEEEEEe--CCeEEEEe
Q 041325 304 KSA-VTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLK--G--ALRGHTKAILCLAVV--SNLLFSGS 376 (450)
Q Consensus 304 ~~~-i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~v~~~~~~--~~~l~s~~ 376 (450)
..+ ...+.+.+++..++.....+.|.+.|........... .... . ...........++++ ++.++...
T Consensus 263 ~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~-----~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~ 337 (426)
T 3c75_H 263 DELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAP-----IEALTEAERADDWRPGGWQQTAYHRQSDRIYLLV 337 (426)
T ss_dssp TSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCC-----EESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEE
T ss_pred CCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeee-----eeeccccccccccccCCceeeEEcCCCCEEEEEe
Confidence 111 1235688998888777888999999987654221000 0000 0 000001111123444 45444443
Q ss_pred C----------CCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcc-cCCcEE
Q 041325 377 S----------DNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGS-LDCEIK 445 (450)
Q Consensus 377 ~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~-~Dg~i~ 445 (450)
. ++.|.+.|..+. +.+..+.. ......++|+|+++. +++++. .++.|.
T Consensus 338 ~~~~~gthk~~s~~VsVID~~T~--------kvv~~I~v-g~~P~gia~spDg~~------------~lyv~n~~s~~Vs 396 (426)
T 3c75_H 338 DQRDEWKHKAASRFVVVLNAETG--------ERINKIEL-GHEIDSINVSQDAEP------------LLYALSAGTQTLH 396 (426)
T ss_dssp EECCTTCTTSCEEEEEEEETTTC--------CEEEEEEE-EEEECEEEECCSSSC------------EEEEEETTTTEEE
T ss_pred cccccccccCCCCEEEEEECCCC--------eEEEEEEC-CCCcCeEEEccCCCE------------EEEEEcCCCCeEE
Confidence 2 357999999874 55555542 235789999999872 455555 699999
Q ss_pred EEEeC
Q 041325 446 IWQIR 450 (450)
Q Consensus 446 iw~l~ 450 (450)
++|++
T Consensus 397 VID~~ 401 (426)
T 3c75_H 397 IYDAA 401 (426)
T ss_dssp EEETT
T ss_pred EEECC
Confidence 99964
No 216
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.22 E-value=7.7e-09 Score=90.29 Aligned_cols=228 Identities=12% Similarity=0.114 Sum_probs=138.0
Q ss_pred cCCCceEEEEEeCCe---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeec
Q 041325 125 GNGDAVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRH 201 (450)
Q Consensus 125 ~h~~~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (450)
..........|.+++ +++...++.|..|+.... .
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~-~------------------------------------------ 78 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGT-V------------------------------------------ 78 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSC-E------------------------------------------
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCC-E------------------------------------------
Confidence 344567788888654 667777899999987432 1
Q ss_pred ceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeec---ccccceEEEEEeecCCcEEEE----EcC
Q 041325 202 KKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKN---AHDDAINAIVVSKSNDGFVYT----GSA 274 (450)
Q Consensus 202 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~----~~~ 274 (450)
..+..+...+..++++++|+++++...++.|..||.. ++....... .....++.+++.+++. ++++ |..
T Consensus 79 --~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~ 154 (305)
T 3dr2_A 79 --DVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLR 154 (305)
T ss_dssp --EEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGS
T ss_pred --EEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCcc
Confidence 0111244568899999999977666566889999986 553322211 1123467889987433 5554 332
Q ss_pred -------------CCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC------CcEEEEEcCC
Q 041325 275 -------------DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD------RSILVWERDQ 335 (450)
Q Consensus 275 -------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d------g~i~vwd~~~ 335 (450)
.+.|..||..+++. .. +. .......++|+||++.|+.+... +.|.+|++..
T Consensus 155 ~~~~~~~~~~~~~~~~v~~~d~~~g~~--------~~-~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~ 224 (305)
T 3dr2_A 155 KPSQGCPADPELAHHSVYRLPPDGSPL--------QR-MA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRD 224 (305)
T ss_dssp CGGGSCCCCCSSSCEEEEEECSSSCCC--------EE-EE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEET
T ss_pred ccccccccccccCCCeEEEEcCCCCcE--------EE-Ee-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecC
Confidence 25677777655441 11 11 33456789999999988877665 7899999875
Q ss_pred CceeeeCCCCCCceeeeccccCCccceEEEEEeCC-eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEE
Q 041325 336 GNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLT 414 (450)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 414 (450)
+. +.. .... . .........+.++.+ .|.++..+ .|.+|+... +.+..+..+. .+.+++
T Consensus 225 ~~-l~~------~~~~-~--~~~~~~pdgi~~d~~G~lwv~~~~-gv~~~~~~g---------~~~~~~~~~~-~~~~~~ 283 (305)
T 3dr2_A 225 GA-LHD------RRHF-A--SVPDGLPDGFCVDRGGWLWSSSGT-GVCVFDSDG---------QLLGHIPTPG-TASNCT 283 (305)
T ss_dssp TE-EEE------EEEE-E--CCSSSCCCSEEECTTSCEEECCSS-EEEEECTTS---------CEEEEEECSS-CCCEEE
T ss_pred CC-ccC------CeEE-E--ECCCCCCCeEEECCCCCEEEecCC-cEEEECCCC---------CEEEEEECCC-ceeEEE
Confidence 43 100 0000 0 111222345666633 35555544 499999753 3455555444 588999
Q ss_pred EEecCCCCCCCCCCCCceEEEEEcccCCc
Q 041325 415 AVVDSDYSNRNSDHSSTSFLVYSGSLDCE 443 (450)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~ 443 (450)
|.++++ .|+.++.++.
T Consensus 284 f~~d~~-------------~L~it~~~~l 299 (305)
T 3dr2_A 284 FDQAQQ-------------RLFITGGPCL 299 (305)
T ss_dssp ECTTSC-------------EEEEEETTEE
T ss_pred EeCCCC-------------EEEEEcCCeE
Confidence 998877 6666666543
No 217
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.21 E-value=5.7e-08 Score=85.54 Aligned_cols=216 Identities=13% Similarity=0.015 Sum_probs=131.5
Q ss_pred ceEEEEEeCCe---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceee
Q 041325 129 AVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCT 205 (450)
Q Consensus 129 ~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (450)
-..+..|+++. +++...++.|..||.+++....
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-------------------------------------------- 85 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-------------------------------------------- 85 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------------------------------
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------------------------------
Confidence 34567788752 5666678899999988763210
Q ss_pred eecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecc---cccceEEEEEeecCCcEEEEEcC------CC
Q 041325 206 WVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNA---HDDAINAIVVSKSNDGFVYTGSA------DT 276 (450)
Q Consensus 206 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~~~v~~~~~~~~~~~~l~~~~~------dg 276 (450)
+ .....+.+++++++++++++. .+ .|.+||..+++........ ....++.+.+++++. ++++... .+
T Consensus 86 ~-~~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~ 161 (326)
T 2ghs_A 86 H-ALPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAG 161 (326)
T ss_dssp E-ECSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCE
T ss_pred E-ECCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCce
Confidence 0 122368899999999877654 44 4999999887754332211 124688999997544 4443321 24
Q ss_pred cEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEe-eCCCcEEEEEcC--CC-ceeeeCCCCCCceeee
Q 041325 277 KIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSG-ACDRSILVWERD--QG-NYIVDGDDDSGHMVLK 352 (450)
Q Consensus 277 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g-~~dg~i~vwd~~--~~-~~~~~~~~~~~~~~~~ 352 (450)
.|..++ +++ ...+.........++|+|+++.|+.+ +.++.|.+||+. ++ +.. .....
T Consensus 162 ~l~~~~--~g~---------~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~--------~~~~~ 222 (326)
T 2ghs_A 162 SIYHVA--KGK---------VTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTG--------KAEVF 222 (326)
T ss_dssp EEEEEE--TTE---------EEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSS--------CCEEE
T ss_pred EEEEEe--CCc---------EEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCccc--------CceEE
Confidence 455555 332 11111223456789999999877555 457899999986 44 211 00011
Q ss_pred ccccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEE-ecCC
Q 041325 353 GALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAV-VDSD 420 (450)
Q Consensus 353 ~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~~ 420 (450)
..+.........+.++ +++.++...++.|.+||.. + +.+..+..+...+++++|. +++.
T Consensus 223 ~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g--------~~~~~i~~~~~~~~~~af~g~d~~ 284 (326)
T 2ghs_A 223 IDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-G--------NHIARYEVPGKQTTCPAFIGPDAS 284 (326)
T ss_dssp EECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-C--------CEEEEEECSCSBEEEEEEESTTSC
T ss_pred EECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-C--------CEEEEEECCCCCcEEEEEecCCCC
Confidence 1122223445677776 4455555567889999974 2 3455566666779999998 7766
No 218
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.21 E-value=8e-09 Score=100.28 Aligned_cols=299 Identities=12% Similarity=0.084 Sum_probs=165.0
Q ss_pred EEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEe------CCCeEEEEEc
Q 041325 81 LAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAH------QDHKIRVWKI 154 (450)
Q Consensus 81 ~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~------~dg~i~iw~~ 154 (450)
+++++..++.++.||.|..+|..+++.+............ ......+ ....+.++.++ .+|.|+.||.
T Consensus 117 ~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~--~~~~~sP----~v~~g~v~vg~~~~~~~~~g~v~a~D~ 190 (689)
T 1yiq_A 117 VAVWKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRS--YTITGAP----RVVNGKVVIGNGGAEFGVRGYVTAYDA 190 (689)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSC--CBCCSCC----EEETTEEEECCBCTTTCCBCEEEEEET
T ss_pred cEEECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCC--ccccCCc----EEECCEEEEEeCCCccCCCCEEEEEEC
Confidence 4557888999999999999999999987764432000000 0001111 12355565554 3789999999
Q ss_pred CCCceeEEeccCc-ccccceeeeeeccCCCcceeEeeecCceEEEeecceeee-ecCCCceEEEEEccCCCEEEEEeCCC
Q 041325 155 DNNTSAYYSTSGK-LKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTW-VHHVDTVSALALSSDGSLLYSTSWDR 232 (450)
Q Consensus 155 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg 232 (450)
++++......... ....... ...+... ... +....... .++......++++++..+++.+..++
T Consensus 191 ~tG~~~W~~~~~~~~p~~~~~--------~~~~~~~--~~~----~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g 256 (689)
T 1yiq_A 191 ETGKEAWRFYTVPGDPKLPPE--------GKGMEIA--AKT----WFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNG 256 (689)
T ss_dssp TTCCEEEEEESSCCCTTSCCC--------SHHHHHH--HTT----CCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCE
T ss_pred CCCcEEEEecccCCCcccccc--------ccccccc--ccc----cCCceeeecCCCCccccceeEcCCCCEEEEeCCCC
Confidence 9997644322110 0000000 0000000 000 00000000 01112223578888888888888776
Q ss_pred c-------------------EEEEecCCCeEEEEeecccc--------cceEEEEEeecCC--cEEEEEcCCCcEEEEeC
Q 041325 233 T-------------------FKIWRTSDFRCLESVKNAHD--------DAINAIVVSKSND--GFVYTGSADTKIKVWKK 283 (450)
Q Consensus 233 ~-------------------i~iwd~~~~~~~~~~~~~~~--------~~v~~~~~~~~~~--~~l~~~~~dg~i~vwd~ 283 (450)
. |..+|..+++.+..++..+. ..+........+. ..++.++.+|.++++|.
T Consensus 257 ~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~ 336 (689)
T 1yiq_A 257 SLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDR 336 (689)
T ss_dssp ESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEET
T ss_pred CccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEEC
Confidence 3 99999999999988763211 1111112221121 26888999999999999
Q ss_pred cchhhhccccchh--------------h--h--h--Hhhccc-----------ceEEEEEcCCCCEEEEeeC--------
Q 041325 284 LRAALQVNKKHSL--------------V--Q--T--LEKHKS-----------AVTALALSTDGTVLYSGAC-------- 324 (450)
Q Consensus 284 ~~~~~~~~~~~~~--------------~--~--~--~~~~~~-----------~i~~l~~~~~~~~l~~g~~-------- 324 (450)
++++......... + . . +..... .-..++|+|+..++++...
T Consensus 337 ~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~ 416 (689)
T 1yiq_A 337 ATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEH 416 (689)
T ss_dssp TTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEEC
T ss_pred CCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeee
Confidence 8887421100000 0 0 0 000000 1123788998888877632
Q ss_pred -------------------------------------CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccce-EEEE
Q 041325 325 -------------------------------------DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI-LCLA 366 (450)
Q Consensus 325 -------------------------------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~ 366 (450)
+|.|+.||+.+++.+.... .+.... -.+.
T Consensus 417 ~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~-------------~~~~~~~g~~~ 483 (689)
T 1yiq_A 417 IPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVP-------------YVTIFNGGTLS 483 (689)
T ss_dssp CSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEE-------------ESSSCCCCEEE
T ss_pred ccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEcc-------------CCCCccCccce
Confidence 3779999999988663211 111111 1334
Q ss_pred EeCCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCc-ceEEEEEEecCC
Q 041325 367 VVSNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRR-PVKCLTAVVDSD 420 (450)
Q Consensus 367 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~-~v~~l~~~~~~~ 420 (450)
-.+.+++.++.||.++.||.+++ +.+..+..... ...-+.|..+++
T Consensus 484 tagglvf~gt~dg~l~a~D~~tG--------~~lw~~~~~~~~~~~p~ty~~~G~ 530 (689)
T 1yiq_A 484 TAGNLVFEGSADGRVIAYAADTG--------EKLWEQPAASGVMAAPVTYSVDGE 530 (689)
T ss_dssp ETTTEEEEECTTSEEEEEETTTC--------CEEEEEECSSCCCSCCEEEEETTE
T ss_pred ECCCEEEEECCCCcEEEEECCCC--------ccceeeeCCCCcccCceEEEECCE
Confidence 45779999999999999999986 55655543322 224466677776
No 219
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.18 E-value=9.8e-10 Score=97.21 Aligned_cols=263 Identities=17% Similarity=0.143 Sum_probs=154.6
Q ss_pred CCcceEEEEEe-CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEE
Q 041325 74 NSSYIPSLAIA-GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVW 152 (450)
Q Consensus 74 h~~~v~~~~~d-~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw 152 (450)
+...+.++..+ +..|+.++.+ |..+|. +++....... ............+.++.++.++.|..+
T Consensus 58 ~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g~~~~~~~~------------~~~~~~~~~~~~~~l~v~t~~~~l~~~ 122 (330)
T 3hxj_A 58 GEIIECRPSIGKDGTIYFGSDK--VYAINP-DGTEKWRFDT------------KKAIVSDFTIFEDILYVTSMDGHLYAI 122 (330)
T ss_dssp GGEEEECCEETTTTEECCSSCE--EEEECC-CGGGGGGSCC-----------------CCEEEETTEEEEECTTSEEEEE
T ss_pred CCCcccceEEecCCcEEEecCc--EEEECC-CCcEEEEEEC------------CCCcccCceEECCEEEEEecCCEEEEE
Confidence 34455667763 5667767665 888886 4443222110 111122223335668888888889999
Q ss_pred EcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCC
Q 041325 153 KIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDR 232 (450)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 232 (450)
|.+ ++..... ......+.++...+++. ++.++.++
T Consensus 123 d~~-g~~~~~~-------------------------------------------~~~~~~~~~~~~~~~g~-l~vgt~~~ 157 (330)
T 3hxj_A 123 NTD-GTEKWRF-------------------------------------------KTKKAIYATPIVSEDGT-IYVGSNDN 157 (330)
T ss_dssp CTT-SCEEEEE-------------------------------------------ECSSCCCSCCEECTTSC-EEEECTTS
T ss_pred cCC-CCEEEEE-------------------------------------------cCCCceeeeeEEcCCCE-EEEEcCCC
Confidence 887 5221100 01122344555666676 56677789
Q ss_pred cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEE
Q 041325 233 TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALAL 312 (450)
Q Consensus 233 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 312 (450)
.|..+|.. ++.+..+. .....+.++... .++.+..++ +.|..+| .+++ ...........+.++..
T Consensus 158 ~l~~~d~~-g~~~~~~~-~~~~~~~~~~~d--~~g~l~v~t--~~l~~~d-~~g~--------~~~~~~~~~~~~~~~~~ 222 (330)
T 3hxj_A 158 YLYAINPD-GTEKWRFK-TNDAITSAASIG--KDGTIYFGS--DKVYAIN-PDGT--------EKWNFYAGYWTVTRPAI 222 (330)
T ss_dssp EEEEECTT-SCEEEEEE-CSSCCCSCCEEC--TTCCEEEES--SSEEEEC-TTSC--------EEEEECCSSCCCSCCEE
T ss_pred EEEEECCC-CCEeEEEe-cCCCceeeeEEc--CCCEEEEEe--CEEEEEC-CCCc--------EEEEEccCCcceeceEE
Confidence 99999998 77776665 334556666665 344566666 7899999 4443 11122223355778888
Q ss_pred cCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe-CCeEEEEeCCCeEEEeeCCCCcc
Q 041325 313 STDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV-SNLLFSGSSDNTIRIWRRSSSVT 391 (450)
Q Consensus 313 ~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~l~s~~~dg~v~iwd~~~~~~ 391 (450)
.++|. |..++.++.|..+|. +++.+.. .......+.++... ...|..++.+|.|..+|. ++
T Consensus 223 ~~~g~-l~v~t~~~gl~~~~~-~g~~~~~-------------~~~~~~~~~~~~~~~~g~l~v~t~~ggl~~~d~-~g-- 284 (330)
T 3hxj_A 223 SEDGT-IYVTSLDGHLYAINP-DGTEKWR-------------FKTGKRIESSPVIGNTDTIYFGSYDGHLYAINP-DG-- 284 (330)
T ss_dssp CTTSC-EEEEETTTEEEEECT-TSCEEEE-------------EECSSCCCSCCEECTTSCEEEECTTCEEEEECT-TS--
T ss_pred CCCCe-EEEEcCCCeEEEECC-CCCEeEE-------------eeCCCCccccceEcCCCeEEEecCCCCEEEECC-CC--
Confidence 87775 555677888888874 4443321 11111222334455 558888889989999985 33
Q ss_pred ccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 392 DHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 392 ~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
+.+..+......+.++...+++. |..++.+|.+++...
T Consensus 285 ------~~~~~~~~~~~~~~~~~~d~~g~--------------l~~gt~~G~~~~~~~ 322 (330)
T 3hxj_A 285 ------TEKWNFETGSWIIATPVIDENGT--------------IYFGTRNGKFYALFN 322 (330)
T ss_dssp ------CEEEEEECSSCCCSCCEECTTCC--------------EEEECTTSCEEEEEC
T ss_pred ------cEEEEEEcCCccccceEEcCCCE--------------EEEEcCCCeEEEEec
Confidence 33333433445566666656665 667888999988654
No 220
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.18 E-value=2.1e-09 Score=105.06 Aligned_cols=241 Identities=11% Similarity=0.111 Sum_probs=142.2
Q ss_pred CCCcceEEEEE--eCCEEEE-----eeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEE
Q 041325 73 GNSSYIPSLAI--AGKLLYG-----GSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSA 143 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~t-----gs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~ 143 (450)
+|...+..++| ||++||- |+.+..|++||+.+++.... .+.+ .....++|+ |+ |+.+
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-----------~~~~--~k~~~~~Ws-Dg~~l~y~ 191 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-----------PLKD--VKFSGISWL-GNEGFFYS 191 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-----------EEEE--EESCCCEEE-TTTEEEEE
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-----------ccCC--ceeccEEEe-CCCEEEEE
Confidence 45567888888 8998883 44446899999999885433 0111 112456787 54 7777
Q ss_pred eCCC-------------eEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeec-C
Q 041325 144 HQDH-------------KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVH-H 209 (450)
Q Consensus 144 ~~dg-------------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 209 (450)
+.+. .|++|++.+..... ..+. .... |
T Consensus 192 ~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~------------~~v~---------------------------~~~~~~ 232 (693)
T 3iuj_A 192 SYDKPDGSELSARTDQHKVYFHRLGTAQEDD------------RLVF---------------------------GAIPAQ 232 (693)
T ss_dssp ESSCCC-------CCCCEEEEEETTSCGGGC------------EEEE---------------------------SCSGGG
T ss_pred EecCcccccccccCCCcEEEEEECCCCcccc------------eEEE---------------------------ecCCCC
Confidence 6664 38888887663100 0000 0012 3
Q ss_pred CCceEEEEEccCCCEEEEEeC----CCcEEEEecCCCe-EEEEeecccccceEEEEEeecCCcEEEEEcCC---CcEEEE
Q 041325 210 VDTVSALALSSDGSLLYSTSW----DRTFKIWRTSDFR-CLESVKNAHDDAINAIVVSKSNDGFVYTGSAD---TKIKVW 281 (450)
Q Consensus 210 ~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d---g~i~vw 281 (450)
...+..+.++|||++|+.... ++.|.++|+.++. ....+. .+....... +.+.++.+++.+..+ +.|..+
T Consensus 233 ~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~-~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~ 310 (693)
T 3iuj_A 233 HHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQ-GDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTV 310 (693)
T ss_dssp CCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEE-CSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEE
T ss_pred CeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEe-CCCCceEEE-EeccCCEEEEEECCCCCCCEEEEE
Confidence 345678899999998865442 3589999997763 334444 344444444 555566666666554 678889
Q ss_pred eCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCC---cEEEEEcCCCceeeeCCCCCCceeeeccccCC
Q 041325 282 KKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDR---SILVWERDQGNYIVDGDDDSGHMVLKGALRGH 358 (450)
Q Consensus 282 d~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg---~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (450)
|+.++... ....+..+...+. .|+++++.|+....++ .|++||+..+... ......
T Consensus 311 d~~~~~~~------~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~-------------~l~~p~ 369 (693)
T 3iuj_A 311 DAANPGPA------HWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGKRVR-------------EVALPG 369 (693)
T ss_dssp ETTSCCGG------GCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSCEEE-------------EECCSS
T ss_pred eCCCCCcc------ccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCCeeE-------------EeecCC
Confidence 98765410 1122334444444 8888898887766544 6889988754321 111122
Q ss_pred ccceEEEEEe--CCeEEEEeCC----CeEEEeeCCCC
Q 041325 359 TKAILCLAVV--SNLLFSGSSD----NTIRIWRRSSS 389 (450)
Q Consensus 359 ~~~v~~~~~~--~~~l~s~~~d----g~v~iwd~~~~ 389 (450)
...+..+.++ ++.++....+ +.|..||+.++
T Consensus 370 ~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 370 LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 3345555554 3333333333 78899988764
No 221
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.17 E-value=7.5e-09 Score=100.50 Aligned_cols=213 Identities=11% Similarity=0.109 Sum_probs=122.7
Q ss_pred EeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEE
Q 041325 83 IAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYY 162 (450)
Q Consensus 83 ~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 162 (450)
..+..++.++.++.|..+|..+++.+............... .....-..+.+..+.++.++.|+.|..+|.++++....
T Consensus 68 v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~v~v~~~dg~l~AlDa~TG~~~W~ 146 (689)
T 1yiq_A 68 VVDGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEA-CCDAVNRGVAVWKGKVYVGVLDGRLEAIDAKTGQRAWS 146 (689)
T ss_dssp EETTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGC-TTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EECCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccc-cccCCCCccEEECCEEEEEccCCEEEEEECCCCCEeee
Confidence 36777888888899999999999987764432211000000 00000123445677799999999999999999965432
Q ss_pred eccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe------CCCcEEE
Q 041325 163 STSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS------WDRTFKI 236 (450)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~i 236 (450)
...... ... .......++ + .++ .++.++ .+|.|..
T Consensus 147 ~~~~~~--------------~~~-------------------~~~~~~sP~--v---~~g-~v~vg~~~~~~~~~g~v~a 187 (689)
T 1yiq_A 147 VDTRAD--------------HKR-------------------SYTITGAPR--V---VNG-KVVIGNGGAEFGVRGYVTA 187 (689)
T ss_dssp EECCSC--------------TTS-------------------CCBCCSCCE--E---ETT-EEEECCBCTTTCCBCEEEE
T ss_pred ecCcCC--------------CCC-------------------CccccCCcE--E---ECC-EEEEEeCCCccCCCCEEEE
Confidence 211100 000 000000111 1 133 344443 3689999
Q ss_pred EecCCCeEEEEeecccc------------------------------cceEEEEEeecCCcEEEEEcCCCc---------
Q 041325 237 WRTSDFRCLESVKNAHD------------------------------DAINAIVVSKSNDGFVYTGSADTK--------- 277 (450)
Q Consensus 237 wd~~~~~~~~~~~~~~~------------------------------~~v~~~~~~~~~~~~l~~~~~dg~--------- 277 (450)
||..+|+.+..+..... .....+++.|. .++++.+..++.
T Consensus 188 ~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~-~~~vy~~~~~g~~w~~~~~~~ 266 (689)
T 1yiq_A 188 YDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPE-LNLLYIGVGNGSLWDPKWRSQ 266 (689)
T ss_dssp EETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETT-TTEEEEECCCEESSCHHHHHT
T ss_pred EECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCC-CCEEEEeCCCCCccccCCCCC
Confidence 99999998877652110 01124677763 457888877764
Q ss_pred ----------EEEEeCcchhhhccccchhhhh-Hh--h--cccceEEEEEcCCCC---EEEEeeCCCcEEEEEcCCCcee
Q 041325 278 ----------IKVWKKLRAALQVNKKHSLVQT-LE--K--HKSAVTALALSTDGT---VLYSGACDRSILVWERDQGNYI 339 (450)
Q Consensus 278 ----------i~vwd~~~~~~~~~~~~~~~~~-~~--~--~~~~i~~l~~~~~~~---~l~~g~~dg~i~vwd~~~~~~~ 339 (450)
|..+|.++++.. +..... .. . ....+.......+|+ .++.++.+|.++++|..+++.+
T Consensus 267 ~~gd~~y~~~v~AlD~~TG~~~----W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l 342 (689)
T 1yiq_A 267 AKGDNLFLSSIVAVNADTGEYV----WHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELL 342 (689)
T ss_dssp TCSCCTTTTEEEEEETTTCCEE----EEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred CCCCceeeeeEEEEEccCCcee----EeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEe
Confidence 999999888721 111000 00 0 111222222223565 7899999999999999999987
Q ss_pred e
Q 041325 340 V 340 (450)
Q Consensus 340 ~ 340 (450)
.
T Consensus 343 ~ 343 (689)
T 1yiq_A 343 S 343 (689)
T ss_dssp E
T ss_pred c
Confidence 4
No 222
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.17 E-value=8.7e-12 Score=111.91 Aligned_cols=180 Identities=16% Similarity=0.158 Sum_probs=97.8
Q ss_pred eCCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEE
Q 041325 136 LGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSA 215 (450)
Q Consensus 136 ~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 215 (450)
.++.+++++.||.|+.||..+++.... .. . +.+.+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~----------------~~---------------------------~--~~~~s 42 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWT----------------LK---------------------------E--DPVLQ 42 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEE----------------EE---------------------------C--CCSCC
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE----------------ec---------------------------C--CCcee
Confidence 456699999999999999999854221 11 0 12223
Q ss_pred EEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEE-EEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccc
Q 041325 216 LALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINA-IVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKH 294 (450)
Q Consensus 216 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 294 (450)
..+..++..+++++.||.|+.||..+++.+..+.......+.+ ..+. .++.+++++.++.|+.||.++++
T Consensus 43 ~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~--~~~~v~~g~~dg~v~a~D~~tG~------- 113 (369)
T 2hz6_A 43 VPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS--SDGILYMGKKQDIWYVIDLLTGE------- 113 (369)
T ss_dssp CC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC-------CCCCEEEEEEEEECCC----------
T ss_pred cceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe--cCCEEEEEeCCCEEEEEECCCCc-------
Confidence 3344567778888899999999999988776664221111111 1111 24467888889999999998887
Q ss_pred hhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC-----
Q 041325 295 SLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS----- 369 (450)
Q Consensus 295 ~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----- 369 (450)
.+..+..+. ...++|++..+++++.|+.|+.||.++++.+.... ... .....+.+
T Consensus 114 -~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~-----------~~~----~~~~~~~~~~~~~ 173 (369)
T 2hz6_A 114 -KQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNAT-----------YFD----YAASLPEDDVDYK 173 (369)
T ss_dssp ------------------------EEEEEEEEEEECCCSSSSSCCCEEE-----------EEE----ECCBCCCCCTTCC
T ss_pred -EEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCEEEeEe-----------ccc----ccCccccCCcccc
Confidence 333333222 23456688899999999999999999987552111 001 11122223
Q ss_pred CeEEEEeCCCeEEEeeCCCC
Q 041325 370 NLLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 370 ~~l~s~~~dg~v~iwd~~~~ 389 (450)
+.+++++.||.|+.||..++
T Consensus 174 ~~v~~~~~dg~v~a~d~~tG 193 (369)
T 2hz6_A 174 MSHFVSNGDGLVVTVDSESG 193 (369)
T ss_dssp CCEEEEETSCEEEEECTTTC
T ss_pred ceEEEECCCCEEEEEECCCC
Confidence 56788899999999999876
No 223
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.16 E-value=1.3e-08 Score=98.68 Aligned_cols=213 Identities=8% Similarity=0.076 Sum_probs=125.4
Q ss_pred EeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEE
Q 041325 83 IAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYY 162 (450)
Q Consensus 83 ~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 162 (450)
..+..++.++.++.|..+|..+++.+................. ......+++.++.++.++.|+.|..+|..+++....
T Consensus 75 v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~v~v~~~dg~l~alD~~tG~~~W~ 153 (677)
T 1kb0_A 75 VVDGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCC-DVVNRGVALWKGKVYVGAWDGRLIALDAATGKEVWH 153 (677)
T ss_dssp EETTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSS-CSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred EECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccc-cCCCCCceEECCEEEEEcCCCEEEEEECCCCCEEee
Confidence 3577777777889999999999998776443321100000000 001123455677899999999999999999965432
Q ss_pred eccC-cccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeC------CCcEE
Q 041325 163 STSG-KLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSW------DRTFK 235 (450)
Q Consensus 163 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~ 235 (450)
.... .... . ......++ . .+..++.++. ++.|+
T Consensus 154 ~~~~~~~~~--------------~--------------------~~~~~~p~----v--~~~~v~v~~~~~~~~~~g~v~ 193 (677)
T 1kb0_A 154 QNTFEGQKG--------------S--------------------LTITGAPR----V--FKGKVIIGNGGAEYGVRGYIT 193 (677)
T ss_dssp EETTTTCCS--------------S--------------------CBCCSCCE----E--ETTEEEECCBCTTTCCBCEEE
T ss_pred ecCCcCcCc--------------C--------------------cccccCcE----E--ECCEEEEEecccccCCCCEEE
Confidence 2211 0000 0 00000111 1 1334455443 68999
Q ss_pred EEecCCCeEEEEeeccccc-------------------------------ceEEEEEeecCCcEEEEEcCCC--------
Q 041325 236 IWRTSDFRCLESVKNAHDD-------------------------------AINAIVVSKSNDGFVYTGSADT-------- 276 (450)
Q Consensus 236 iwd~~~~~~~~~~~~~~~~-------------------------------~v~~~~~~~~~~~~l~~~~~dg-------- 276 (450)
.+|..+++.+..+...... ....+++.+. .+.++.+..++
T Consensus 194 a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~-~~~vy~~~~~~~~w~~~~~ 272 (677)
T 1kb0_A 194 AYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAE-LNTMYVGTGNGSPWSHKVR 272 (677)
T ss_dssp EEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETT-TTEEEEECCCEESSCHHHH
T ss_pred EEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCC-CCEEEEECCCCccccCCCC
Confidence 9999999998777521111 1124677764 44777776654
Q ss_pred -----------cEEEEeCcchhhhccccchhhhhHhhc-------ccceEEEEEcCCC---CEEEEeeCCCcEEEEEcCC
Q 041325 277 -----------KIKVWKKLRAALQVNKKHSLVQTLEKH-------KSAVTALALSTDG---TVLYSGACDRSILVWERDQ 335 (450)
Q Consensus 277 -----------~i~vwd~~~~~~~~~~~~~~~~~~~~~-------~~~i~~l~~~~~~---~~l~~g~~dg~i~vwd~~~ 335 (450)
.|..+|.++++.. +... ...| ......+....+| +.++.++.+|.|+++|..+
T Consensus 273 ~~~~gd~~~~~sv~AlD~~TG~~~----W~~~--~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~t 346 (677)
T 1kb0_A 273 SPKGGDNLYLASIVALDPDTGKYK----WHYQ--ETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTN 346 (677)
T ss_dssp STTCCCCTTTTEEEEECTTTCCEE----EEEE--SSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTT
T ss_pred CccCCCCeeeEEEEEEECCCCCEE----EEEe--cCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCC
Confidence 4889999887721 1110 0011 1222333444477 6899999999999999999
Q ss_pred CceeeeCC
Q 041325 336 GNYIVDGD 343 (450)
Q Consensus 336 ~~~~~~~~ 343 (450)
++.+....
T Consensus 347 G~~l~~~~ 354 (677)
T 1kb0_A 347 GKFISAKN 354 (677)
T ss_dssp CCEEEEEE
T ss_pred CCEecccc
Confidence 99876443
No 224
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.15 E-value=2.7e-07 Score=82.52 Aligned_cols=261 Identities=8% Similarity=-0.026 Sum_probs=153.2
Q ss_pred CCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEee----------CCCcEEEecCCCCCceeeeecCCCCcceeEE
Q 041325 56 QAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGS----------SNGEIRAWNRDPNNYVNITSTDVGDHANVVA 123 (450)
Q Consensus 56 ~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs----------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~ 123 (450)
..+...+++.+.++. .-..+ .+++ ||++++.+. .++.|.+||..+.+............ .
T Consensus 50 ~v~D~~t~~~~~~i~--~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~----~ 121 (373)
T 2mad_H 50 WVLDAGSGSILGHVN--GGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPR----F 121 (373)
T ss_pred EEEECCCCeEEEEec--CCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccc----c
Confidence 344455677777776 33334 6666 899999886 36789999998877665532210000 0
Q ss_pred ecCCCceEEEEEeCCe--EEEEeC--CCeEEEEEcCCCceeEEeccCcccccceeeeee-ccCCCcceeEeeecCceEEE
Q 041325 124 TGNGDAVKSLVVLGDK--LFSAHQ--DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIAT-LPTLNDRFTKCFLANNYVQV 198 (450)
Q Consensus 124 ~~h~~~v~~l~~~~~~--l~s~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 198 (450)
.+......++++|++ |+.+.. ++.|.++| .+++. +.. ++.
T Consensus 122 -~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~----------------~~~~i~~----------------- 166 (373)
T 2mad_H 122 -DVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSS----------------DDQLLSS----------------- 166 (373)
T ss_pred -ccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCE----------------EeEEcCC-----------------
Confidence 011234578899877 666653 57899999 87732 222 211
Q ss_pred eecceeeeecCCCceEEEEEccCC-CEEEEEeCCCcEEEEecCCCeEEEEeec----ccccc-eEEEEEeecCCcEEEEE
Q 041325 199 RRHKKCTWVHHVDTVSALALSSDG-SLLYSTSWDRTFKIWRTSDFRCLESVKN----AHDDA-INAIVVSKSNDGFVYTG 272 (450)
Q Consensus 199 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~-v~~~~~~~~~~~~l~~~ 272 (450)
. .++.+.+++ +.+++.+.||.+.++|. +++....... ....+ .....+.+....++++.
T Consensus 167 -----------~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 231 (373)
T 2mad_H 167 -----------P---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPV 231 (373)
T ss_pred -----------C---ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEc
Confidence 0 123344543 45566778999999999 7776633220 11111 12344555445444444
Q ss_pred cCCCcEEEEeCcchhhhccccchhhh----hHhhcccceEEEEEcCCCCEEEEeeC----------CCcEEEEEcCCCce
Q 041325 273 SADTKIKVWKKLRAALQVNKKHSLVQ----TLEKHKSAVTALALSTDGTVLYSGAC----------DRSILVWERDQGNY 338 (450)
Q Consensus 273 ~~dg~i~vwd~~~~~~~~~~~~~~~~----~~~~~~~~i~~l~~~~~~~~l~~g~~----------dg~i~vwd~~~~~~ 338 (450)
..+.+.+.|+............... ...........++++|+++.++++.. ++.|.++|..+++.
T Consensus 232 -~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v 310 (373)
T 2mad_H 232 -YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT 310 (373)
T ss_pred -CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEE
Confidence 6788999998654311101000000 00001233455789999998888653 35799999998876
Q ss_pred eeeCCCCCCceeeeccccCCccceEEEEEe--CC-eEEEEe-CCCeEEEeeCCCC
Q 041325 339 IVDGDDDSGHMVLKGALRGHTKAILCLAVV--SN-LLFSGS-SDNTIRIWRRSSS 389 (450)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~~-~dg~v~iwd~~~~ 389 (450)
+. .+.. .....+++|+ ++ +++++. .++.|.++|..++
T Consensus 311 v~-------------~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~ 351 (373)
T 2mad_H 311 SS-------------QISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG 351 (373)
T ss_pred EE-------------EEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence 52 2211 1235677777 45 677776 5899999999874
No 225
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.10 E-value=4.5e-08 Score=86.58 Aligned_cols=285 Identities=10% Similarity=0.008 Sum_probs=161.6
Q ss_pred cCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEee----------CCCcEEEecCCCCCceeeeecCCCCcceeE
Q 041325 55 KQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGS----------SNGEIRAWNRDPNNYVNITSTDVGDHANVV 122 (450)
Q Consensus 55 ~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs----------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~ 122 (450)
.......+.+.+.++.. -..+ . +++ ||++++.+. .++.|.+||..+.+.........+..
T Consensus 61 V~ViD~~t~~v~~~I~v--G~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r---- 132 (386)
T 3sjl_D 61 QFVIDGEAGRVIGMIDG--GFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPR---- 132 (386)
T ss_dssp EEEEETTTTEEEEEEEE--CSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC----
T ss_pred EEEEECCCCeEEEEEEC--CCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccc----
Confidence 34455667788888873 3334 3 666 898887765 36789999999998776532211000
Q ss_pred EecCCCceEEEEEeCCe--EEEEeC--CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEE
Q 041325 123 ATGNGDAVKSLVVLGDK--LFSAHQ--DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQV 198 (450)
Q Consensus 123 ~~~h~~~v~~l~~~~~~--l~s~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (450)
.........+++++|+ ++.+.. ++.|.++|+.+.+ .+..++...
T Consensus 133 -~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~----------------vv~tI~v~g--------------- 180 (386)
T 3sjl_D 133 -FLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKA----------------FKRMLDVPD--------------- 180 (386)
T ss_dssp -CCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTE----------------EEEEEECCS---------------
T ss_pred -cccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCc----------------EEEEEECCC---------------
Confidence 0012245678899877 666653 6899999999983 333332110
Q ss_pred eecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCC-CeEEEEee---cccccceE-EEEEeecCCcEEEEEc
Q 041325 199 RRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSD-FRCLESVK---NAHDDAIN-AIVVSKSNDGFVYTGS 273 (450)
Q Consensus 199 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~---~~~~~~v~-~~~~~~~~~~~l~~~~ 273 (450)
. ...+....+.+++.+.||.+.+.++.+ ++...... .....++. ...|.+ .++.++..+
T Consensus 181 --------------~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~-~dG~~~~vs 244 (386)
T 3sjl_D 181 --------------C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ-KAGRLVWPT 244 (386)
T ss_dssp --------------E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEET-TTTEEEEEB
T ss_pred --------------c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEc-CCCcEEEEe
Confidence 0 112222345566667777777777765 44322111 01112221 235543 233444466
Q ss_pred CCCcEEEEeCcchhhhccccchhhh--hH-h-hcccceEEEEEcCCCCEEEEeeC----------CCcEEEEEcCCCcee
Q 041325 274 ADTKIKVWKKLRAALQVNKKHSLVQ--TL-E-KHKSAVTALALSTDGTVLYSGAC----------DRSILVWERDQGNYI 339 (450)
Q Consensus 274 ~dg~i~vwd~~~~~~~~~~~~~~~~--~~-~-~~~~~i~~l~~~~~~~~l~~g~~----------dg~i~vwd~~~~~~~ 339 (450)
.+|.|.+.|+............... .. . -.......++++++++.++.... .+.|.++|+.+++.+
T Consensus 245 ~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~ 324 (386)
T 3sjl_D 245 YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERL 324 (386)
T ss_dssp TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEE
T ss_pred CCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEE
Confidence 6899999998665422111111100 00 1 12234456788999998888653 257999999998865
Q ss_pred eeCCCCCCceeeeccccCCccceEEEEEe--CC-eEEEE-eCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEE
Q 041325 340 VDGDDDSGHMVLKGALRGHTKAILCLAVV--SN-LLFSG-SSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTA 415 (450)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~-~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~ 415 (450)
. .+.. ...+..++++ ++ +|++. ..++.|.++|..++ +.+..+..- ..-+.|.+
T Consensus 325 ~-------------~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~--------k~~~~i~~~-~~p~~l~~ 381 (386)
T 3sjl_D 325 A-------------KFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG--------EELRSVNQL-GHGPQVIT 381 (386)
T ss_dssp E-------------EEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTC--------CEEEEECCC-CSSCCEEE
T ss_pred E-------------EEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCC--------cEEEEecCC-CCCceeEE
Confidence 2 1111 1245677776 33 55554 45899999999875 555555422 22334444
Q ss_pred Eec
Q 041325 416 VVD 418 (450)
Q Consensus 416 ~~~ 418 (450)
++|
T Consensus 382 s~d 384 (386)
T 3sjl_D 382 TAD 384 (386)
T ss_dssp ECC
T ss_pred CCc
Confidence 444
No 226
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.09 E-value=5.6e-08 Score=86.31 Aligned_cols=200 Identities=10% Similarity=0.052 Sum_probs=117.4
Q ss_pred CCCceEEEEEccCCCEEEEEeC-----CCcEEEEecCCCeEEEEeecc-----cccceEEEEEeecCCcEEEEEc---CC
Q 041325 209 HVDTVSALALSSDGSLLYSTSW-----DRTFKIWRTSDFRCLESVKNA-----HDDAINAIVVSKSNDGFVYTGS---AD 275 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~---~d 275 (450)
+...+..++++++++++++-.. ++.|.+||+.+++.+..+... +...+..+++.+.+...+++.. .+
T Consensus 65 ~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~ 144 (343)
T 2qe8_A 65 TFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDK 144 (343)
T ss_dssp CCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGG
T ss_pred ceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCC
Confidence 5568999999999886665443 578999999999877766521 1235689999874444455555 67
Q ss_pred CcEEEEeCcchhhhccccc--hh-----hhhHhh--------------cccceEEEEEcCCCCEEEEeeCCC-cEEEEEc
Q 041325 276 TKIKVWKKLRAALQVNKKH--SL-----VQTLEK--------------HKSAVTALALSTDGTVLYSGACDR-SILVWER 333 (450)
Q Consensus 276 g~i~vwd~~~~~~~~~~~~--~~-----~~~~~~--------------~~~~i~~l~~~~~~~~l~~g~~dg-~i~vwd~ 333 (450)
+.|.+||+.+++....... .. .....+ ....+..|+|+|+++.|+.+..++ .|..++.
T Consensus 145 ~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~ 224 (343)
T 2qe8_A 145 AALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKS 224 (343)
T ss_dssp CEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEH
T ss_pred CeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEH
Confidence 8999999876542110000 00 000000 012468899999999888887766 5555543
Q ss_pred CCCceeeeCCCCCCceeeec--cccCCccceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcc
Q 041325 334 DQGNYIVDGDDDSGHMVLKG--ALRGHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRP 409 (450)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~ 409 (450)
..... .......... ...++......++++ ++++++...++.|.+||..++. ...+... .+...
T Consensus 225 ~~~~~-----~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~------~~~~~~~-~~~~~ 292 (343)
T 2qe8_A 225 ADLSN-----LQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA------YKLLVTD-EKLSW 292 (343)
T ss_dssp HHHTC-----TTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE------EEEEEEC-GGGSC
T ss_pred HHhcC-----CCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC------EEEEEEC-Cceec
Confidence 21000 0000000000 011222344556676 5577888888999999984330 1122211 12456
Q ss_pred eEEEEEEecCC
Q 041325 410 VKCLTAVVDSD 420 (450)
Q Consensus 410 v~~l~~~~~~~ 420 (450)
+.+++|.+++.
T Consensus 293 p~~va~~~~g~ 303 (343)
T 2qe8_A 293 TDSFNFGSDGY 303 (343)
T ss_dssp EEEEEECTTSC
T ss_pred CCeeEECCCCc
Confidence 88999998887
No 227
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.08 E-value=1.5e-09 Score=95.95 Aligned_cols=255 Identities=16% Similarity=0.151 Sum_probs=148.4
Q ss_pred EEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEEEcCCC
Q 041325 80 SLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVWKIDNN 157 (450)
Q Consensus 80 ~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~~~~~ 157 (450)
+... .+..|+.++.++.|..|| .+++...... .+...+.++...++. ++.++.+ |..+|. ++
T Consensus 24 ~~~~d~~g~l~v~t~~~~l~~~d-~~g~~~~~~~------------~~~~~~~~~~~~~~g~l~v~t~~--l~~~d~-~g 87 (330)
T 3hxj_A 24 SPILAKNGTIYLGSSNKNLYAIN-TDGSVKWFFK------------SGEIIECRPSIGKDGTIYFGSDK--VYAINP-DG 87 (330)
T ss_dssp CCEECTTSCEECSSTTTTTEEEC-TTSCEEESSC------------GGGEEEECCEETTTTEECCSSCE--EEEECC-CG
T ss_pred CceEccCCeEEEEcCCCEEEEEC-CCCcEEEEEe------------cCCCcccceEEecCCcEEEecCc--EEEECC-CC
Confidence 3445 366777888889999999 7777544311 122344566665444 6666555 777775 33
Q ss_pred ceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEE
Q 041325 158 TSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIW 237 (450)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 237 (450)
+. +..... .........+. +..+..++.++.|..+
T Consensus 88 ~~----------------~~~~~~---------------------------~~~~~~~~~~~--~~~l~v~t~~~~l~~~ 122 (330)
T 3hxj_A 88 TE----------------KWRFDT---------------------------KKAIVSDFTIF--EDILYVTSMDGHLYAI 122 (330)
T ss_dssp GG----------------GGGSCC--------------------------------CCEEEE--TTEEEEECTTSEEEEE
T ss_pred cE----------------EEEEEC---------------------------CCCcccCceEE--CCEEEEEecCCEEEEE
Confidence 11 001100 00011111222 4567778889999999
Q ss_pred ecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCC
Q 041325 238 RTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGT 317 (450)
Q Consensus 238 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~ 317 (450)
|.. ++...... .....+.++... .++.++.++.++.|..+|.. ++ ....+......+.++...+++.
T Consensus 123 d~~-g~~~~~~~-~~~~~~~~~~~~--~~g~l~vgt~~~~l~~~d~~-g~--------~~~~~~~~~~~~~~~~~d~~g~ 189 (330)
T 3hxj_A 123 NTD-GTEKWRFK-TKKAIYATPIVS--EDGTIYVGSNDNYLYAINPD-GT--------EKWRFKTNDAITSAASIGKDGT 189 (330)
T ss_dssp CTT-SCEEEEEE-CSSCCCSCCEEC--TTSCEEEECTTSEEEEECTT-SC--------EEEEEECSSCCCSCCEECTTCC
T ss_pred cCC-CCEEEEEc-CCCceeeeeEEc--CCCEEEEEcCCCEEEEECCC-CC--------EeEEEecCCCceeeeEEcCCCE
Confidence 998 77666655 334445555555 35567888888999999986 43 1112222334566777777777
Q ss_pred EEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-eEEEEeCCCeEEEeeCCCCccccCCC
Q 041325 318 VLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFSGSSDNTIRIWRRSSSVTDHQKG 396 (450)
Q Consensus 318 ~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~ 396 (450)
+.+ ++ +.|..+| .+++... ........+.++..+++ .|..++.++.|..+|...
T Consensus 190 l~v-~t--~~l~~~d-~~g~~~~-------------~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g-------- 244 (330)
T 3hxj_A 190 IYF-GS--DKVYAIN-PDGTEKW-------------NFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINPDG-------- 244 (330)
T ss_dssp EEE-ES--SSEEEEC-TTSCEEE-------------EECCSSCCCSCCEECTTSCEEEEETTTEEEEECTTS--------
T ss_pred EEE-Ee--CEEEEEC-CCCcEEE-------------EEccCCcceeceEECCCCeEEEEcCCCeEEEECCCC--------
Confidence 554 44 7899999 6665442 11222345667777755 788888888888887532
Q ss_pred ceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 397 YSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 397 ~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
..+..+......+..+...+++. |..++.+|.|..+|
T Consensus 245 -~~~~~~~~~~~~~~~~~~~~~g~--------------l~v~t~~ggl~~~d 281 (330)
T 3hxj_A 245 -TEKWRFKTGKRIESSPVIGNTDT--------------IYFGSYDGHLYAIN 281 (330)
T ss_dssp -CEEEEEECSSCCCSCCEECTTSC--------------EEEECTTCEEEEEC
T ss_pred -CEeEEeeCCCCccccceEcCCCe--------------EEEecCCCCEEEEC
Confidence 22333333333334444443443 66666777777665
No 228
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=99.07 E-value=2.3e-11 Score=109.20 Aligned_cols=188 Identities=13% Similarity=0.131 Sum_probs=98.4
Q ss_pred EEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeCCCeEEEEEcCCCce
Q 041325 82 AIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQDHKIRVWKIDNNTS 159 (450)
Q Consensus 82 ~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~dg~i~iw~~~~~~~ 159 (450)
+.++..+++++.||.|+.||..+++....... +.+.+..+..+. +++++.||.|+.||.++++.
T Consensus 6 ~v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--------------~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~ 71 (369)
T 2hz6_A 6 TLPETLLFVSTLDGSLHAVSKRTGSIKWTLKE--------------DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG 71 (369)
T ss_dssp --CTTEEEEEETTSEEEEEETTTCCEEEEEEC--------------CCSCCCC-----CCEEECTTTCCEEEC-----CC
T ss_pred eeeCCEEEEEcCCCEEEEEECCCCCEEEEecC--------------CCceecceEcCCCEEEEeCCCCEEEEEECCCCce
Confidence 34789999999999999999999998766332 122222222223 66678999999999987743
Q ss_pred eEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEEEec
Q 041325 160 AYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRT 239 (450)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 239 (450)
... ...... .. ....++ +. .+..+++++.|+.|..||.
T Consensus 72 ~w~----------------~~~~~~--------------------~~-~~~sp~----~~-~~~~v~~g~~dg~v~a~D~ 109 (369)
T 2hz6_A 72 LTK----------------LPFTIP--------------------EL-VQASPC----RS-SDGILYMGKKQDIWYVIDL 109 (369)
T ss_dssp SEE----------------CSCCHH--------------------HH-HTTCSC----C------CCCCEEEEEEEEECC
T ss_pred eee----------------eeccCc--------------------cc-cccCce----Ee-cCCEEEEEeCCCEEEEEEC
Confidence 211 100000 00 001111 11 2446777888999999999
Q ss_pred CCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCC---
Q 041325 240 SDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDG--- 316 (450)
Q Consensus 240 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~--- 316 (450)
.+|+.+..+.. +. ...++| .++.+++++.|+.|+.||.++++ .+..+... .....++..+.
T Consensus 110 ~tG~~~w~~~~-~~----~~~~~p-~~~~v~~~~~dg~v~a~d~~tG~--------~~W~~~~~--~~~~~~~~~~~~~~ 173 (369)
T 2hz6_A 110 LTGEKQQTLSS-AF----ADSLSP-STSLLYLGRTEYTITMYDTKTRE--------LRWNATYF--DYAASLPEDDVDYK 173 (369)
T ss_dssp C----------------------------EEEEEEEEEEECCCSSSSS--------CCCEEEEE--EECCBCCCCCTTCC
T ss_pred CCCcEEEEecC-CC----cccccc-cCCEEEEEecCCEEEEEECCCCC--------EEEeEecc--cccCccccCCcccc
Confidence 99998877762 22 133455 45588888999999999998876 22111111 11222333322
Q ss_pred CEEEEeeCCCcEEEEEcCCCceeee
Q 041325 317 TVLYSGACDRSILVWERDQGNYIVD 341 (450)
Q Consensus 317 ~~l~~g~~dg~i~vwd~~~~~~~~~ 341 (450)
..+++++.||.|+.||..+++.+..
T Consensus 174 ~~v~~~~~dg~v~a~d~~tG~~~W~ 198 (369)
T 2hz6_A 174 MSHFVSNGDGLVVTVDSESGDVLWI 198 (369)
T ss_dssp CCEEEEETSCEEEEECTTTCCEEEE
T ss_pred ceEEEECCCCEEEEEECCCCcEEEE
Confidence 5677888999999999999987654
No 229
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.06 E-value=1.3e-08 Score=90.07 Aligned_cols=265 Identities=11% Similarity=0.001 Sum_probs=151.4
Q ss_pred cEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEe----------CCCeEEEEEcCCCceeEEe
Q 041325 96 EIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAH----------QDHKIRVWKIDNNTSAYYS 163 (450)
Q Consensus 96 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~----------~dg~i~iw~~~~~~~~~~~ 163 (450)
.|.+.|..+++.+.... .+. .+ .+.+++++ ++.+. .++.|.+||..+.+..
T Consensus 47 ~vsvID~~t~~v~~~i~-----------vG~-~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv--- 109 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSL-----------GAF-LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPI--- 109 (368)
T ss_dssp EEEEEETTTTEEEEEEE-----------ECT-TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEE---
T ss_pred eEEEEECCCCeEEEEEe-----------CCC-CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEE---
Confidence 78899999988776622 233 34 79999887 66654 3789999999998432
Q ss_pred ccCcccccceeeeeeccCCC-cceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeC--CCcEEE--Ee
Q 041325 164 TSGKLKNKYYERIATLPTLN-DRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSW--DRTFKI--WR 238 (450)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~i--wd 238 (450)
..++... .++ ........++++|||++++++.. +..+.+ +|
T Consensus 110 -------------~~I~v~~~~~~---------------------~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD 155 (368)
T 1mda_H 110 -------------ADIELPDAPRF---------------------SVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPG 155 (368)
T ss_dssp -------------EEEEETTSCSC---------------------CBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETT
T ss_pred -------------EEEECCCcccc---------------------ccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEc
Confidence 2222110 000 00113457899999999998874 467888 99
Q ss_pred cCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc-----hhhhccccchhhhhHhhcccceEEEEEc
Q 041325 239 TSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR-----AALQVNKKHSLVQTLEKHKSAVTALALS 313 (450)
Q Consensus 239 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~-----~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 313 (450)
..+ +..+... +. +...|.+...+++.+.||.+.+.|+.+ ++...... ..+.....+. . .
T Consensus 156 ~~t---v~~i~v~--~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t----~~i~vg~~P~---~-~ 219 (368)
T 1mda_H 156 ASD---DQLTKSA--SC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCT----GAQNCSSQAA---Q-A 219 (368)
T ss_dssp TEE---EEEEECS--SC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSC----TTSCBCSCCE---E-E
T ss_pred hhh---ceEEECC--Cc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEee----eeeeCCCCcc---c-c
Confidence 877 4444411 11 223454555677778899998999875 33110000 1111122333 3 5
Q ss_pred CCCCEEEEeeCCCcEEEEEcCCCce--eeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeC---------CCeEE
Q 041325 314 TDGTVLYSGACDRSILVWERDQGNY--IVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSS---------DNTIR 382 (450)
Q Consensus 314 ~~~~~l~~g~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~---------dg~v~ 382 (450)
+++..++..+. +.|.+.|+..... +......... ...............+..+++.++.+.. ++.+.
T Consensus 220 ~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~-~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ 297 (368)
T 1mda_H 220 NYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESG-RKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTS 297 (368)
T ss_dssp TTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTH-HHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEE
T ss_pred ccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccc-ccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEE
Confidence 66666666666 9999999875321 1000000000 0000000011111233333455554432 23566
Q ss_pred EeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcc-cCCcEEEEEeC
Q 041325 383 IWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGS-LDCEIKIWQIR 450 (450)
Q Consensus 383 iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~-~Dg~i~iw~l~ 450 (450)
++|+.+. +.+..+.... ....++|++|++. ++++.. .++.|.++|++
T Consensus 298 ViD~~t~--------~vv~~i~vg~-~p~gi~~s~Dg~~------------l~va~~~~~~~VsVID~~ 345 (368)
T 1mda_H 298 SVTASVG--------QTSGPISNGH-DSDAIIAAQDGAS------------DNYANSAGTEVLDIYDAA 345 (368)
T ss_dssp EEESSSC--------CEEECCEEEE-EECEEEECCSSSC------------EEEEEETTTTEEEEEESS
T ss_pred EEECCCC--------eEEEEEECCC-CcceEEECCCCCE------------EEEEccCCCCeEEEEECC
Confidence 9999874 4555554332 5889999999974 566666 59999999974
No 230
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.02 E-value=1.2e-07 Score=82.67 Aligned_cols=235 Identities=12% Similarity=0.170 Sum_probs=139.9
Q ss_pred eeeeEEeecCCCcceEEEEE--eCC-EEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-
Q 041325 64 QCSATLKVKGNSSYIPSLAI--AGK-LLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d~~-~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~- 139 (450)
..+..+. .+........| +++ +++++..++.|..|+.. ++.. . +..+...+..+++.+++
T Consensus 35 ~~~~~l~--~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~-~------------~~~~~~~~~gl~~d~dG~ 98 (305)
T 3dr2_A 35 ARLLTLY--DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVD-V------------LLDATAFTNGNAVDAQQR 98 (305)
T ss_dssp CCCEEEE--CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEE-E------------EEESCSCEEEEEECTTSC
T ss_pred CceEEEe--cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEE-E------------EeCCCCccceeeECCCCC
Confidence 3455555 66677888888 577 67788888999999873 4422 1 23455678999999777
Q ss_pred EEEEeC-CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEE
Q 041325 140 LFSAHQ-DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALAL 218 (450)
Q Consensus 140 l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 218 (450)
++++.. ++.|.+|+.+ +....... ... ......++++++
T Consensus 99 l~v~~~~~~~v~~~~~~-g~~~~~~~-------------~~~--------------------------~~~~~~~~~i~~ 138 (305)
T 3dr2_A 99 LVHCEHGRRAITRSDAD-GQAHLLVG-------------RYA--------------------------GKRLNSPNDLIV 138 (305)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEEC-------------EET--------------------------TEECSCCCCEEE
T ss_pred EEEEECCCCEEEEECCC-CCEEEEEe-------------ccC--------------------------CCccCCCCCEEE
Confidence 666654 5789999876 32110000 000 001234678999
Q ss_pred ccCCCEEEE----EeC-------------CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC------
Q 041325 219 SSDGSLLYS----TSW-------------DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD------ 275 (450)
Q Consensus 219 ~~~~~~l~~----~~~-------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------ 275 (450)
+++|+++++ |.. .+.|..||..+++..... .....+.++|+|++. .|+.+...
T Consensus 139 d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~---~~~~p~gl~~spdg~-~lyv~~~~~~~~~~ 214 (305)
T 3dr2_A 139 ARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA---DLDHPNGLAFSPDEQ-TLYVSQTPEQGHGS 214 (305)
T ss_dssp CTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE---EESSEEEEEECTTSS-EEEEEECCC---CC
T ss_pred CCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe---cCCCCcceEEcCCCC-EEEEEecCCcCCCC
Confidence 999998876 332 256777887666543322 234567899998655 44444433
Q ss_pred CcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccc
Q 041325 276 TKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGAL 355 (450)
Q Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 355 (450)
+.|.+|++...... ........ .......++++++|++ .+++.+| |.+|+.. ++.+ ..+
T Consensus 215 ~~i~~~~~~~~~l~---~~~~~~~~--~~~~pdgi~~d~~G~l-wv~~~~g-v~~~~~~-g~~~-------------~~~ 273 (305)
T 3dr2_A 215 VEITAFAWRDGALH---DRRHFASV--PDGLPDGFCVDRGGWL-WSSSGTG-VCVFDSD-GQLL-------------GHI 273 (305)
T ss_dssp CEEEEEEEETTEEE---EEEEEECC--SSSCCCSEEECTTSCE-EECCSSE-EEEECTT-SCEE-------------EEE
T ss_pred CEEEEEEecCCCcc---CCeEEEEC--CCCCCCeEEECCCCCE-EEecCCc-EEEECCC-CCEE-------------EEE
Confidence 78999997643200 00011111 2234567899999994 4444444 9999984 4433 122
Q ss_pred cCCccceEEEEEe--CCeEEEEeCCCe
Q 041325 356 RGHTKAILCLAVV--SNLLFSGSSDNT 380 (450)
Q Consensus 356 ~~~~~~v~~~~~~--~~~l~s~~~dg~ 380 (450)
..+. .+.+++|. ++.|+.++.++.
T Consensus 274 ~~~~-~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 274 PTPG-TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp ECSS-CCCEEEECTTSCEEEEEETTEE
T ss_pred ECCC-ceeEEEEeCCCCEEEEEcCCeE
Confidence 2222 46778885 446776666543
No 231
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.02 E-value=2.5e-08 Score=97.38 Aligned_cols=200 Identities=17% Similarity=0.159 Sum_probs=121.3
Q ss_pred CCCceEEEEEccCCCEEEEE-----eCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC--------
Q 041325 209 HVDTVSALALSSDGSLLYST-----SWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD-------- 275 (450)
Q Consensus 209 ~~~~v~~~~~~~~~~~l~~~-----~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------- 275 (450)
|...+..++|+|||++|+-+ +....|++||+.+++.+.... .......++|+ +++. |+.+..+
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~--~~~k~~~~~Ws-Dg~~-l~y~~~~~~~~~~~~ 202 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL--KDVKFSGISWL-GNEG-FFYSSYDKPDGSELS 202 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE--EEEESCCCEEE-TTTE-EEEEESSCCC-----
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc--CCceeccEEEe-CCCE-EEEEEecCccccccc
Confidence 45578889999999988843 333579999999998655322 12224677899 6664 4444444
Q ss_pred -----CcEEEEeCcchhhhccccchhhhhHhh-cccceEEEEEcCCCCEEEEeeC----CCcEEEEEcCCCceeeeCCCC
Q 041325 276 -----TKIKVWKKLRAALQVNKKHSLVQTLEK-HKSAVTALALSTDGTVLYSGAC----DRSILVWERDQGNYIVDGDDD 345 (450)
Q Consensus 276 -----g~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~g~~----dg~i~vwd~~~~~~~~~~~~~ 345 (450)
..|++|++.+.. .....+..... +...+..+.|+|||++|+.... ++.|+++|+.++...
T Consensus 203 ~~~~~~~v~~~~lgt~~----~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~------ 272 (693)
T 3iuj_A 203 ARTDQHKVYFHRLGTAQ----EDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAP------ 272 (693)
T ss_dssp --CCCCEEEEEETTSCG----GGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCC------
T ss_pred ccCCCcEEEEEECCCCc----ccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCc------
Confidence 348999986654 11123333333 4455788999999998865432 358999998765310
Q ss_pred CCceeeeccccCCccceEE-EEEeCCe-EEEEeCC---CeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCC
Q 041325 346 SGHMVLKGALRGHTKAILC-LAVVSNL-LFSGSSD---NTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSD 420 (450)
Q Consensus 346 ~~~~~~~~~~~~~~~~v~~-~~~~~~~-l~s~~~d---g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~ 420 (450)
...+..+...... +...++. ++....+ +.|..+|+.++. ......+..|...+. .|+++++
T Consensus 273 ------~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~------~~~~~~l~~~~~~~~--~~s~~g~ 338 (693)
T 3iuj_A 273 ------LLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPG------PAHWRDLIPERQQVL--TVHSGSG 338 (693)
T ss_dssp ------CEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCC------GGGCEEEECCCSSCE--EEEEETT
T ss_pred ------eEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCC------ccccEEEecCCCCEE--EEEEECC
Confidence 0122223333333 3444554 4444443 679999988641 111234455655555 8999988
Q ss_pred CCCCCCCCCCceEEEEEcc-cCC--cEEEEEe
Q 041325 421 YSNRNSDHSSTSFLVYSGS-LDC--EIKIWQI 449 (450)
Q Consensus 421 ~~~~~~~~~~~~~~l~s~~-~Dg--~i~iw~l 449 (450)
.|+... .|+ .|++|++
T Consensus 339 -------------~lv~~~~~~g~~~l~~~d~ 357 (693)
T 3iuj_A 339 -------------YLFAEYMVDATARVEQFDY 357 (693)
T ss_dssp -------------EEEEEEEETTEEEEEEECT
T ss_pred -------------EEEEEEEECCeeEEEEEEC
Confidence 555544 454 5777765
No 232
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.99 E-value=5.9e-07 Score=74.10 Aligned_cols=210 Identities=10% Similarity=0.097 Sum_probs=130.4
Q ss_pred cccCCCCCccceeeeEEeecCCCcceEEEEEe-CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceE
Q 041325 53 FRKQAPAASEHQCSATLKVKGNSSYIPSLAIA-GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVK 131 (450)
Q Consensus 53 ~~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~d-~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 131 (450)
...+.|...+.+.++++. +.-......|.|+ +.++.+.+.+|.|+++|+++++..... . .....-.
T Consensus 33 ~~~~~~~~~~~~Vv~~~p-hd~~~ftqGL~~~~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-----------~~~~Fge 99 (268)
T 3nok_A 33 GSVQEPVRRVAHIIREYP-HATNAFTQGLVFHQGHFFESTGHQGTLRQLSLESAQPVWME-R-----------LGNIFAE 99 (268)
T ss_dssp --CCCCEEEEEEEEEEEE-CCTTCCEEEEEEETTEEEEEETTTTEEEECCSSCSSCSEEE-E-----------CTTCCEE
T ss_pred CcccCccccceEEEEEEc-CCCccccceEEEECCEEEEEcCCCCEEEEEECCCCcEEeEE-C-----------CCCccee
Confidence 333455555567777774 2233445789995 455566777889999999999977763 1 1111223
Q ss_pred EEEEeCCeEEE-EeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCC
Q 041325 132 SLVVLGDKLFS-AHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHV 210 (450)
Q Consensus 132 ~l~~~~~~l~s-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (450)
.+++.++.|+. .-.++.+.+||.++.+ .+..++..
T Consensus 100 Git~~g~~Ly~ltw~~~~v~V~D~~Tl~----------------~~~ti~~~---------------------------- 135 (268)
T 3nok_A 100 GLASDGERLYQLTWTEGLLFTWSGMPPQ----------------RERTTRYS---------------------------- 135 (268)
T ss_dssp EEEECSSCEEEEESSSCEEEEEETTTTE----------------EEEEEECS----------------------------
T ss_pred EEEEeCCEEEEEEccCCEEEEEECCcCc----------------EEEEEeCC----------------------------
Confidence 46666777444 4458899999999883 33333211
Q ss_pred CceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeeccc-c---cceEEEEEeecCCcEEEEEcCCCcEEEEeCcch
Q 041325 211 DTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAH-D---DAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~---~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 286 (450)
..-..++ ++++.|+.+..++.|.++|..+.+.+..+.... . ..++.+.|. +..+.+..-.++.|.+.|.+++
T Consensus 136 ~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~--dG~lyanvw~s~~I~vIDp~TG 211 (268)
T 3nok_A 136 GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA--NGVIYANIWHSSDVLEIDPATG 211 (268)
T ss_dssp SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTCSEEEEECTTTC
T ss_pred CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe--CCEEEEEECCCCeEEEEeCCCC
Confidence 1112333 457777777779999999999999888876321 1 245677877 4445555557889999999888
Q ss_pred hhhccccchhhhh-H----hhcccceEEEEEcCCCCEEEEee
Q 041325 287 ALQVNKKHSLVQT-L----EKHKSAVTALALSTDGTVLYSGA 323 (450)
Q Consensus 287 ~~~~~~~~~~~~~-~----~~~~~~i~~l~~~~~~~~l~~g~ 323 (450)
+.........+.. . .....-.+.||++|+++.|++.+
T Consensus 212 ~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 212 TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 7432222221111 1 11224678999999766555543
No 233
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.98 E-value=2.5e-07 Score=77.36 Aligned_cols=197 Identities=9% Similarity=0.033 Sum_probs=128.0
Q ss_pred eEEEEEccCCCEEEEEeC--CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc
Q 041325 213 VSALALSSDGSLLYSTSW--DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290 (450)
Q Consensus 213 v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 290 (450)
...++|++++.++++.+. ++.|+++|+.+++.+..+..........+++. ++.+.++.-.++.+.++|..+.+
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~--- 97 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLS--- 97 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTE---
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCc---
Confidence 579999998755555443 68999999999999988763332233455665 56567777789999999987665
Q ss_pred cccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN 370 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 370 (450)
.+..+...... ...+++||+.++++..++.|.++|..+.+.+....- ..-...-..+..+.|.+.
T Consensus 98 -----v~~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~V--------g~~~~p~~~~nele~~dg 162 (266)
T 2iwa_A 98 -----NIKNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNV--------KYNGHRVIRLNELEYING 162 (266)
T ss_dssp -----EEEEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEEC--------EETTEECCCEEEEEEETT
T ss_pred -----EEEEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEE--------CCCCcccccceeEEEECC
Confidence 33333211011 233555788777777889999999998765421100 000001113456666655
Q ss_pred eEE-EEeCCCeEEEeeCCCCccccCCCceeEEEecCC-------------CcceEEEEEEecCCCCCCCCCCCCceEEEE
Q 041325 371 LLF-SGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGH-------------RRPVKCLTAVVDSDYSNRNSDHSSTSFLVY 436 (450)
Q Consensus 371 ~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h-------------~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~ 436 (450)
.+. ....++.|.+.|..++ +.+..+.-. ....+.|+|+|+++. +++
T Consensus 163 ~lyvn~~~~~~V~vID~~tg--------~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~------------lfV 222 (266)
T 2iwa_A 163 EVWANIWQTDCIARISAKDG--------TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKR------------IFV 222 (266)
T ss_dssp EEEEEETTSSEEEEEETTTC--------CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTE------------EEE
T ss_pred EEEEecCCCCeEEEEECCCC--------cEEEEEECCCcccccccccccccCceEEEEEcCCCCE------------EEE
Confidence 444 4445789999999885 444444321 124689999999874 778
Q ss_pred EcccCCcEEEEEe
Q 041325 437 SGSLDCEIKIWQI 449 (450)
Q Consensus 437 s~~~Dg~i~iw~l 449 (450)
++...+.|..-++
T Consensus 223 Tgk~~~~v~~i~l 235 (266)
T 2iwa_A 223 TGKLWPKLFEIKL 235 (266)
T ss_dssp EETTCSEEEEEEE
T ss_pred ECCCCCeEEEEEE
Confidence 8878888877665
No 234
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=98.95 E-value=1.6e-07 Score=83.41 Aligned_cols=252 Identities=13% Similarity=0.096 Sum_probs=143.0
Q ss_pred cceEEEEE--eCCEEEEee--CCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeC-----
Q 041325 76 SYIPSLAI--AGKLLYGGS--SNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQ----- 145 (450)
Q Consensus 76 ~~v~~~~~--d~~~l~tgs--~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~----- 145 (450)
.....+++ +|+++++.. .++.++||.+.+++.... .... . ...+|...+..+++.++. |+.+..
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~-p~~~--~---~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~ 90 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPF-PPQS--G---NAIITFDTVLGIKSDGNGIVWMLDNGNQSK 90 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEES-CCCC--S---SCCCCCSCEEEEEECSSSEEEEEECHHHHT
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecC-CCcc--c---CcccceeEeeEEEEcCCCcEEEEcCCCCcC
Confidence 67889999 688888864 235366666654432211 0000 0 022466789999999866 665543
Q ss_pred -CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCE
Q 041325 146 -DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSL 224 (450)
Q Consensus 146 -dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 224 (450)
++.|.+||+.+++.. ..+..... ...+...+..+++++++..
T Consensus 91 ~~~~i~~~d~~tg~~~----------------~~~~~~~~---------------------~~~~~~~~~~v~vd~~~g~ 133 (343)
T 2qe8_A 91 SVPKLVAWDTLNNQLS----------------RVIYLPPP---------------------ITLSNSFVNDLAVDLIHNF 133 (343)
T ss_dssp SCCEEEEEETTTTEEE----------------EEEECCTT---------------------TSCTTCCCCEEEEETTTTE
T ss_pred CCCeEEEEECCCCeEE----------------EEEECChh---------------------hcccccccceEEEecCCCE
Confidence 578999999887421 11110000 0012335688999986444
Q ss_pred E-EEEe---CCCcEEEEecCCCeEEEEeeccc-----------------------------ccceEEEEEeecCCcEEEE
Q 041325 225 L-YSTS---WDRTFKIWRTSDFRCLESVKNAH-----------------------------DDAINAIVVSKSNDGFVYT 271 (450)
Q Consensus 225 l-~~~~---~dg~i~iwd~~~~~~~~~~~~~~-----------------------------~~~v~~~~~~~~~~~~l~~ 271 (450)
+ ++-. .++.|.+||+.+++....+. .| ...++.|+++|++. .|+.
T Consensus 134 ~yvtd~~~~~~~~i~v~d~~~g~~~r~~~-~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~-~ly~ 211 (343)
T 2qe8_A 134 VYISDPAPDDKAALIRVDLQTGLAARVLQ-GYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENE-WLYL 211 (343)
T ss_dssp EEEEECCSGGGCEEEEEETTTCCEEEECT-TCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSC-EEEE
T ss_pred EEEEcCccCCCCeEEEEECCCCCEEEEec-CCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCC-EEEE
Confidence 4 4444 57899999998877655442 11 02357899998554 5555
Q ss_pred EcCCCcEEEEeCcchhhhcc--ccchhhhhH--hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCC
Q 041325 272 GSADTKIKVWKKLRAALQVN--KKHSLVQTL--EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSG 347 (450)
Q Consensus 272 ~~~dg~i~vwd~~~~~~~~~--~~~~~~~~~--~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~ 347 (450)
+..++. ++|.+........ ........+ .++......++++++|+++++...++.|.+||..+++..
T Consensus 212 ~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~-------- 282 (343)
T 2qe8_A 212 SPMHST-SMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYK-------- 282 (343)
T ss_dssp EESSCS-EEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEE--------
T ss_pred EeCCCC-eEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEE--------
Confidence 554442 4444432210000 000111111 123345678999999999999888999999998555422
Q ss_pred ceeeeccccCCccceEEEEEeC--CeEEEEeCCCeEEEee
Q 041325 348 HMVLKGALRGHTKAILCLAVVS--NLLFSGSSDNTIRIWR 385 (450)
Q Consensus 348 ~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~dg~v~iwd 385 (450)
.... ..+-....++++.+ .++++.+..+.+.+|.
T Consensus 283 ---~~~~-~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 283 ---LLVT-DEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp ---EEEE-CGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred ---EEEE-CCceecCCeeEECCCCcEEEEeCccccccccc
Confidence 1111 11234567888864 3556655555554443
No 235
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.95 E-value=2.6e-06 Score=82.52 Aligned_cols=292 Identities=12% Similarity=0.140 Sum_probs=159.2
Q ss_pred EeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCC-Cc-eEEEEEeCCeEEEEeCCCeEEEEEcCCCcee
Q 041325 83 IAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNG-DA-VKSLVVLGDKLFSAHQDHKIRVWKIDNNTSA 160 (450)
Q Consensus 83 ~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~-v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~ 160 (450)
..+..++.++.++.|..+|..+++.+............. ... .. -..+.+..+.++.++.|+.|..+|..+++..
T Consensus 64 v~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~ 140 (668)
T 1kv9_A 64 FHDGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKAR---TSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAI 140 (668)
T ss_dssp EETTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGG---GCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEE
T ss_pred EECCEEEEECCCCeEEEEECCCChhceEECCCCCccccc---cccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEe
Confidence 357777778888999999999999877644322111000 000 00 1234455677889999999999999999876
Q ss_pred EEeccCccccc-c-------eeeeeeccCC-----CcceeEeeecCceEEEeecceee------------------e---
Q 041325 161 YYSTSGKLKNK-Y-------YERIATLPTL-----NDRFTKCFLANNYVQVRRHKKCT------------------W--- 206 (450)
Q Consensus 161 ~~~~~~~~~~~-~-------~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~------------------~--- 206 (450)
........... . ......+... .+....++....-..++...... +
T Consensus 141 W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~ 220 (668)
T 1kv9_A 141 WSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGD 220 (668)
T ss_dssp EEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSS
T ss_pred eeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcc
Confidence 55443211000 0 0000000000 01122222222111222111000 0
Q ss_pred -----ecCCCceEEEEEccCCCEEEEEeCCCc-------------------EEEEecCCCeEEEEeecc-cc-------c
Q 041325 207 -----VHHVDTVSALALSSDGSLLYSTSWDRT-------------------FKIWRTSDFRCLESVKNA-HD-------D 254 (450)
Q Consensus 207 -----~~~~~~v~~~~~~~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~-~~-------~ 254 (450)
..+......++++++..+++.+..++. |..+|..+++.+..++.. |. .
T Consensus 221 ~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~ 300 (668)
T 1kv9_A 221 QYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQ 300 (668)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCC
Confidence 001111234688888888888877663 999999999998888733 21 2
Q ss_pred ceEEEEEeecCC--cEEEEEcCCCcEEEEeCcchhhhccccchh--------------hh----hHhhc----------c
Q 041325 255 AINAIVVSKSND--GFVYTGSADTKIKVWKKLRAALQVNKKHSL--------------VQ----TLEKH----------K 304 (450)
Q Consensus 255 ~v~~~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~--------------~~----~~~~~----------~ 304 (450)
+.....+..++. ..++.++.+|.++++|..+++......... +. .+.+. .
T Consensus 301 ~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~ 380 (668)
T 1kv9_A 301 QITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGA 380 (668)
T ss_dssp CEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCS
T ss_pred CcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccc
Confidence 222222222222 258899999999999998877321000000 00 00000 0
Q ss_pred cceEEEEEcCCCCEEEEee------------------------------------CCCcEEEEEcCCCceeeeCCCCCCc
Q 041325 305 SAVTALALSTDGTVLYSGA------------------------------------CDRSILVWERDQGNYIVDGDDDSGH 348 (450)
Q Consensus 305 ~~i~~l~~~~~~~~l~~g~------------------------------------~dg~i~vwd~~~~~~~~~~~~~~~~ 348 (450)
..-..++++|+..+++... .+|.|..||+.+++.+....
T Consensus 381 ~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~----- 455 (668)
T 1kv9_A 381 HNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVP----- 455 (668)
T ss_dssp SCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEE-----
T ss_pred cCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEcc-----
Confidence 0011267788766665421 24789999999998663211
Q ss_pred eeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCCC
Q 041325 349 MVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 349 ~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~ 389 (450)
.. ....-..+...+++++.++.||.++.||.+++
T Consensus 456 ------~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG 489 (668)
T 1kv9_A 456 ------YP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKG 489 (668)
T ss_dssp ------ES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTC
T ss_pred ------CC-CCCcCceeEeCCCEEEEECCcccchhhhhhcC
Confidence 10 11111234456789999999999999999986
No 236
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.91 E-value=1.4e-06 Score=72.87 Aligned_cols=215 Identities=11% Similarity=0.098 Sum_probs=136.3
Q ss_pred ccceeeeEEeecCCC--cceEEEEEeC-CEEEEe-eC--CCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEE
Q 041325 61 SEHQCSATLKVKGNS--SYIPSLAIAG-KLLYGG-SS--NGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLV 134 (450)
Q Consensus 61 ~~~~~~~~l~~~~h~--~~v~~~~~d~-~~l~tg-s~--dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 134 (450)
.+.+.++++. |. .....++|++ ..|+.+ +. ++.|++.|+.+++.+..... +.......++
T Consensus 7 ~~~~vv~~~p---~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l-----------~~~~fgeGi~ 72 (266)
T 2iwa_A 7 YIVEVLNEFP---HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKM-----------DDSYFGEGLT 72 (266)
T ss_dssp EEEEEEEEEE---CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEEC-----------CTTCCEEEEE
T ss_pred cCceEEEEEE---CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEec-----------CCCcceEEEE
Confidence 4567777775 44 3467899943 455544 33 57999999999997766321 1112334677
Q ss_pred EeCCeEEEE-eCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCce
Q 041325 135 VLGDKLFSA-HQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTV 213 (450)
Q Consensus 135 ~~~~~l~s~-~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 213 (450)
+.++.|+.+ -.++.+.++|..+.+ .+..++.. ...
T Consensus 73 ~~g~~lyv~t~~~~~v~viD~~t~~----------------v~~~i~~g---------------------------~~~- 108 (266)
T 2iwa_A 73 LLNEKLYQVVWLKNIGFIYDRRTLS----------------NIKNFTHQ---------------------------MKD- 108 (266)
T ss_dssp EETTEEEEEETTCSEEEEEETTTTE----------------EEEEEECC---------------------------SSS-
T ss_pred EeCCEEEEEEecCCEEEEEECCCCc----------------EEEEEECC---------------------------CCC-
Confidence 777775544 457899999999873 33333211 001
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccc----cceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhh
Q 041325 214 SALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHD----DAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQ 289 (450)
Q Consensus 214 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 289 (450)
...++++++.++++..++.|.++|..+.+.+..+..... ..++.+.+. +..+++....++.|.+.|..+++..
T Consensus 109 -g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~--dg~lyvn~~~~~~V~vID~~tg~V~ 185 (266)
T 2iwa_A 109 -GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI--NGEVWANIWQTDCIARISAKDGTLL 185 (266)
T ss_dssp -CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEEETTTCCEE
T ss_pred -eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE--CCEEEEecCCCCeEEEEECCCCcEE
Confidence 123455777777777789999999999998888763221 136778887 4445555556889999999887632
Q ss_pred ccccchhhh-h--Hh--hcccceEEEEEcCCCCE-EEEeeCCCcEEEEEcCCC
Q 041325 290 VNKKHSLVQ-T--LE--KHKSAVTALALSTDGTV-LYSGACDRSILVWERDQG 336 (450)
Q Consensus 290 ~~~~~~~~~-~--~~--~~~~~i~~l~~~~~~~~-l~~g~~dg~i~vwd~~~~ 336 (450)
..-...-.. . .. ........|+|+|+++. ++++...+.|.+.++...
T Consensus 186 ~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 186 GWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 111111010 0 00 11245689999998865 455667888999988753
No 237
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.91 E-value=1.4e-05 Score=79.45 Aligned_cols=307 Identities=10% Similarity=0.178 Sum_probs=171.8
Q ss_pred eEEEEEe-CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEEEcC
Q 041325 78 IPSLAIA-GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVWKID 155 (450)
Q Consensus 78 v~~~~~d-~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~~~ 155 (450)
|.++..| ...|..|+.++.|..|+..+++...... ..+...|.++....++ +..++.++-+..||..
T Consensus 175 i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~-----------~~~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~ 243 (795)
T 4a2l_A 175 IASTLYRQGDQIYIGTSTDGLYTYSITQKTFEKVIP-----------ILGTKQIQAILQQSPTRIWVATEGAGLFLINPK 243 (795)
T ss_dssp CEEEEEEETTEEEEEESSSCEEEEETTTCCEEECC---------------CCCEEEEEEEETTEEEEEEBSSCEEEEETT
T ss_pred eEEEEECCCCCEEEEECCCCEEEEeCCCCeEEEecC-----------CCCCCeeEEEEEcCCCCEEEEECCCCeEEEeCC
Confidence 7888773 5566667776568899987766433210 1124578888876544 7777766558999988
Q ss_pred CCceeEEeccC----cccccceeeeeeccCCCcceeEeeecCceEEEeec-cee-eee--------cCCCceEEEEEccC
Q 041325 156 NNTSAYYSTSG----KLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRH-KKC-TWV--------HHVDTVSALALSSD 221 (450)
Q Consensus 156 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~--------~~~~~v~~~~~~~~ 221 (450)
+.+...+.... ......+.++.. ..++.+.+... ++...+... ... .+. -....|.++...++
T Consensus 244 ~~~~~~~~~~~~~~~~l~~~~i~~i~~--d~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~ 320 (795)
T 4a2l_A 244 TKEIKNYLHSPSNPKSISSNYIRSLAM--DSQNRLWIGTF-NDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQ 320 (795)
T ss_dssp TTEEEEECCCTTCTTSCSCSBEEEEEE--CTTSCEEEEES-SCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTT
T ss_pred CCeEEEeecCCCCccccCCCeEEEEEE--cCCCCEEEEeC-ChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCC
Confidence 76544333221 111112222221 12223322222 222222111 111 111 12357999999988
Q ss_pred CCEEEEEeCCCcEEEEecCCCeEEEEeec-----ccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchh
Q 041325 222 GSLLYSTSWDRTFKIWRTSDFRCLESVKN-----AHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSL 296 (450)
Q Consensus 222 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~ 296 (450)
|. |..|+.++-|..|+..+......... .....|.++... .++.|..|+.++-|..||..++..........
T Consensus 321 g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d--~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~ 397 (795)
T 4a2l_A 321 GG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVED--KDKNLWIGTNDGGLNLYNPITQRFTSYTLQED 397 (795)
T ss_dssp SC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEEC--TTSCEEEEESSSCEEEECTTTCCEEEECCC--
T ss_pred cC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEEC--CCCCEEEEECCCCeEEEcCCCCcEEEEecCCC
Confidence 87 56677778899998765542221110 123458888776 45678888888889999976544211000000
Q ss_pred hhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-eEEEE
Q 041325 297 VQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFSG 375 (450)
Q Consensus 297 ~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~ 375 (450)
..........|.++...+++++|..|+.++-|.+||..+++...-... ........|.++..+.+ .|..|
T Consensus 398 ~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~---------~~~l~~~~v~~i~~d~~g~lwig 468 (795)
T 4a2l_A 398 ESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQR---------NSQLVNENVYAILPDGEGNLWLG 468 (795)
T ss_dssp ----CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTT---------TSCCSCSCEEEEEECSSSCEEEE
T ss_pred CcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecC---------CCCcCCCeeEEEEECCCCCEEEE
Confidence 000001235789999988888577788777799999987754311000 00123456888888743 56666
Q ss_pred eCCCeEEEeeCCCCccccCCCceeEEEec-------CCCcceEEEEEEecCC
Q 041325 376 SSDNTIRIWRRSSSVTDHQKGYSCLAVLE-------GHRRPVKCLTAVVDSD 420 (450)
Q Consensus 376 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-------~h~~~v~~l~~~~~~~ 420 (450)
+.+ .+.+||..++. ...+. -....|.++...+++.
T Consensus 469 t~~-Gl~~~~~~~~~---------~~~~~~~~~~~~~~~~~i~~i~~d~~g~ 510 (795)
T 4a2l_A 469 TLS-ALVRFNPEQRS---------FTTIEKEKDGTPVVSKQITTLFRDSHKR 510 (795)
T ss_dssp ESS-CEEEEETTTTE---------EEECCBCTTCCBCCCCCEEEEEECTTCC
T ss_pred ecC-ceeEEeCCCCe---------EEEccccccccccCCceEEEEEECCCCC
Confidence 664 58889877531 11111 1235688888777776
No 238
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.88 E-value=5.2e-06 Score=70.67 Aligned_cols=254 Identities=11% Similarity=0.085 Sum_probs=143.6
Q ss_pred CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC--eEE-EEeCCCeEEEEEcCCCceeE
Q 041325 85 GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD--KLF-SAHQDHKIRVWKIDNNTSAY 161 (450)
Q Consensus 85 ~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~l~-s~~~dg~i~iw~~~~~~~~~ 161 (450)
|.+|+.+.. +.|+.++++....... . ....+......+..+++.++ .|+ +-..++.|..++.+......
T Consensus 1 ~~~l~~~~~-~~I~~~~~~g~~~~~~-~------~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~ 72 (267)
T 1npe_A 1 GTHLLFAQT-GKIERLPLERNTMKKT-E------AKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT 72 (267)
T ss_dssp CEEEEEEEE-EEEEEEEESSSCBCGG-G------CEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE
T ss_pred CcEEEEEcC-CeEEEEEecCcccccc-c------ceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE
Confidence 345555554 5788888776542110 0 00011111235678899864 344 44457889999987652100
Q ss_pred EeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEE-EEeCCCcEEEEecC
Q 041325 162 YSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLY-STSWDRTFKIWRTS 240 (450)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~ 240 (450)
.. .........+++++++..++ +-...+.|.++++.
T Consensus 73 ----------------~~---------------------------~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~ 109 (267)
T 1npe_A 73 ----------------II---------------------------RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMD 109 (267)
T ss_dssp ----------------EE---------------------------CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred ----------------EE---------------------------ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcC
Confidence 00 01113568899999655554 44557889999987
Q ss_pred CCeEEEEeecccccceEEEEEeecCCcEEEEEcC--CCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCE
Q 041325 241 DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSA--DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTV 318 (450)
Q Consensus 241 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~ 318 (450)
.... ..+..........+++.|.++.++++... .+.|..+++..... ..+. .........++++++++.
T Consensus 110 g~~~-~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~------~~~~--~~~~~~P~gia~d~~~~~ 180 (267)
T 1npe_A 110 GTQR-RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR------RILA--QDNLGLPNGLTFDAFSSQ 180 (267)
T ss_dssp SCSC-EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC------EEEE--CTTCSCEEEEEEETTTTE
T ss_pred CCCE-EEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc------EEEE--ECCCCCCcEEEEcCCCCE
Confidence 4332 22221222467899999855544444433 46888888653220 0110 012245788999998776
Q ss_pred EEEee-CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEe-CCCeEEEeeCCCCccccCCC
Q 041325 319 LYSGA-CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGS-SDNTIRIWRRSSSVTDHQKG 396 (450)
Q Consensus 319 l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~-~dg~v~iwd~~~~~~~~~~~ 396 (450)
|+.+. ..+.|.++|........ . ... ......++..++.|+.+. .++.|..+|..++
T Consensus 181 lyv~d~~~~~I~~~~~~g~~~~~----------~---~~~-~~~P~gi~~d~~~lyva~~~~~~v~~~d~~~g------- 239 (267)
T 1npe_A 181 LCWVDAGTHRAECLNPAQPGRRK----------V---LEG-LQYPFAVTSYGKNLYYTDWKTNSVIAMDLAIS------- 239 (267)
T ss_dssp EEEEETTTTEEEEEETTEEEEEE----------E---EEC-CCSEEEEEEETTEEEEEETTTTEEEEEETTTT-------
T ss_pred EEEEECCCCEEEEEecCCCceEE----------E---ecC-CCCceEEEEeCCEEEEEECCCCeEEEEeCCCC-------
Confidence 65554 56789999987543210 1 111 122356667766555444 5689999998864
Q ss_pred ceeEEEecCCC-cceEEEEEEecCC
Q 041325 397 YSCLAVLEGHR-RPVKCLTAVVDSD 420 (450)
Q Consensus 397 ~~~~~~~~~h~-~~v~~l~~~~~~~ 420 (450)
+.+..+.... .....+++.|++.
T Consensus 240 -~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 240 -KEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp -EEEEEECCSSCCCCCCEEEECSCC
T ss_pred -CceEEEccccccccceeeecCccC
Confidence 4555554322 2467788877753
No 239
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.86 E-value=2.1e-06 Score=70.85 Aligned_cols=204 Identities=9% Similarity=0.082 Sum_probs=126.9
Q ss_pred ccceeeeEEeecCCCcceEEEEE-eCCEEEEeeCCC--cEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC
Q 041325 61 SEHQCSATLKVKGNSSYIPSLAI-AGKLLYGGSSNG--EIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG 137 (450)
Q Consensus 61 ~~~~~~~~l~~~~h~~~v~~~~~-d~~~l~tgs~dg--~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 137 (450)
...+.++++. +.-......|.| ++.++.+.+.+| .|+++|+++++........ ....-..++..+
T Consensus 29 ~~~~vv~~~p-hd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-----------~~~FgeGit~~g 96 (262)
T 3nol_A 29 YDYQIVHSYP-HDTKAFTEGFFYRNGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-----------KRYFGEGISDWK 96 (262)
T ss_dssp EEEEEEEEEE-CCTTCEEEEEEEETTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-----------TTCCEEEEEEET
T ss_pred cceEEEEEec-CCCCcccceEEEECCEEEEECCCCCCceEEEEECCCCcEEEEEecC-----------CccceeEEEEeC
Confidence 3456677774 122234578888 555556666666 8999999999977763221 111224466677
Q ss_pred CeEEEEe-CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEE
Q 041325 138 DKLFSAH-QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSAL 216 (450)
Q Consensus 138 ~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 216 (450)
+.|+... .++.+.+||.++.+ .+..++.. . ...
T Consensus 97 ~~ly~ltw~~~~v~v~D~~t~~----------------~~~ti~~~----------------------------~--eG~ 130 (262)
T 3nol_A 97 DKIVGLTWKNGLGFVWNIRNLR----------------QVRSFNYD----------------------------G--EGW 130 (262)
T ss_dssp TEEEEEESSSSEEEEEETTTCC----------------EEEEEECS----------------------------S--CCC
T ss_pred CEEEEEEeeCCEEEEEECccCc----------------EEEEEECC----------------------------C--Cce
Confidence 7755544 58899999999883 33333211 0 112
Q ss_pred EEccCCCEEEEEeCCCcEEEEecCCCeEEEEeeccc-c---cceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccc
Q 041325 217 ALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAH-D---DAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNK 292 (450)
Q Consensus 217 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~---~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 292 (450)
.+.++++.|+.+..++.|.++|..+.+.+..+.... . ..++.+.+. +..+.+..-.++.|.+.|.++++.....
T Consensus 131 glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~--~G~lyan~w~~~~I~vIDp~tG~V~~~I 208 (262)
T 3nol_A 131 GLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV--DGEIFANVWQTNKIVRIDPETGKVTGII 208 (262)
T ss_dssp CEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTSSEEEEECTTTCBEEEEE
T ss_pred EEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE--CCEEEEEEccCCeEEEEECCCCcEEEEE
Confidence 233567777776668889999999999888876321 1 335567776 4445555657889999999887733221
Q ss_pred cchhhhhH----hhcccceEEEEEcCCCCEEEEeeC
Q 041325 293 KHSLVQTL----EKHKSAVTALALSTDGTVLYSGAC 324 (450)
Q Consensus 293 ~~~~~~~~----~~~~~~i~~l~~~~~~~~l~~g~~ 324 (450)
....+... .......+.|||+|+++.|++.+.
T Consensus 209 d~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 209 DLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp ECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred ECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 11111110 112345789999998887776653
No 240
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=98.83 E-value=6.6e-05 Score=74.69 Aligned_cols=311 Identities=11% Similarity=0.138 Sum_probs=172.4
Q ss_pred CcceEEEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEE
Q 041325 75 SSYIPSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVW 152 (450)
Q Consensus 75 ~~~v~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw 152 (450)
...|.++.. ....|..|+.++-+.+||..+++............ .-....|.++...+++ |..|+.+ -|.+|
T Consensus 214 ~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~-----~l~~~~i~~i~~d~~g~lWigt~~-Gl~~~ 287 (795)
T 4a2l_A 214 TKQIQAILQQSPTRIWVATEGAGLFLINPKTKEIKNYLHSPSNPK-----SISSNYIRSLAMDSQNRLWIGTFN-DLNIY 287 (795)
T ss_dssp CCCEEEEEEEETTEEEEEEBSSCEEEEETTTTEEEEECCCTTCTT-----SCSCSBEEEEEECTTSCEEEEESS-CEEEE
T ss_pred CCeeEEEEEcCCCCEEEEECCCCeEEEeCCCCeEEEeecCCCCcc-----ccCCCeEEEEEEcCCCCEEEEeCC-hhheE
Confidence 456888887 35566667655558999987766443311100000 0123578999888666 7778776 58889
Q ss_pred EcCCCceeEEeccC----cccccceeeeeeccCCCcceeEeeecCceEEEeec-ce-eeeec-------CCCceEEEEEc
Q 041325 153 KIDNNTSAYYSTSG----KLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRH-KK-CTWVH-------HVDTVSALALS 219 (450)
Q Consensus 153 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~-------~~~~v~~~~~~ 219 (450)
+..+.......... ......+..+. ...++.+.+....++...+... .. ..+.. ....|.++...
T Consensus 288 ~~~~~~~~~~~~~~~~~~~l~~~~i~~i~--~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d 365 (795)
T 4a2l_A 288 HEGTDSFASYSSNPVENGSLSQRSVRSIF--MDSQGGMWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVED 365 (795)
T ss_dssp ETTTTEEEEECCCTTSTTSCSSSCEEEEE--ECTTSCEEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEEC
T ss_pred cCCCCeEEEEecCCCCCCCCCCCcEEEEE--EeCCcCEEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEEC
Confidence 98776544332211 11111111111 1122222222222333222211 11 11111 23468999998
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCeEEEEeec-------ccccceEEEEEeecCCcE-EEEEcCCCcEEEEeCcchhhhcc
Q 041325 220 SDGSLLYSTSWDRTFKIWRTSDFRCLESVKN-------AHDDAINAIVVSKSNDGF-VYTGSADTKIKVWKKLRAALQVN 291 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~v~~~~~~~~~~~~-l~~~~~dg~i~vwd~~~~~~~~~ 291 (450)
++|. |..|+.++-|..||..+++....... .....|.++...+ ++. |..|+.++.|..||..+++....
T Consensus 366 ~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~--~g~~lWigt~~~Gl~~~d~~~~~~~~~ 442 (795)
T 4a2l_A 366 KDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE--KKSLVYIGTHAGGLSILHRNSGQVENF 442 (795)
T ss_dssp TTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET--TTTEEEEEETTTEEEEEETTTCCEEEE
T ss_pred CCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC--CCCEEEEEeCcCceeEEeCCCCcEEEe
Confidence 8887 55678787899999887654433211 1235688888763 445 88888877899999876542110
Q ss_pred ccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-
Q 041325 292 KKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN- 370 (450)
Q Consensus 292 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 370 (450)
. .. .-......|.++...++|++.+. +.+ -|.+||..+++........ .........|.++..+.+
T Consensus 443 ~---~~-~~~l~~~~v~~i~~d~~g~lwig-t~~-Gl~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~i~~d~~g 509 (795)
T 4a2l_A 443 N---QR-NSQLVNENVYAILPDGEGNLWLG-TLS-ALVRFNPEQRSFTTIEKEK-------DGTPVVSKQITTLFRDSHK 509 (795)
T ss_dssp C---TT-TSCCSCSCEEEEEECSSSCEEEE-ESS-CEEEEETTTTEEEECCBCT-------TCCBCCCCCEEEEEECTTC
T ss_pred e---cC-CCCcCCCeeEEEEECCCCCEEEE-ecC-ceeEEeCCCCeEEEccccc-------cccccCCceEEEEEECCCC
Confidence 0 00 00023457899999888875554 444 4889998876543100000 000112356888888744
Q ss_pred eEEEEeCCCeEEEeeCCCCccccCCCceeEEEec-------CCCcceEEEEEEecCC
Q 041325 371 LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLE-------GHRRPVKCLTAVVDSD 420 (450)
Q Consensus 371 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-------~h~~~v~~l~~~~~~~ 420 (450)
.|..|+. +.|..||..++ .. .+. .....|.++...+++.
T Consensus 510 ~lWigt~-~Gl~~~~~~~~--------~~--~~~~~~~~~~l~~~~i~~i~~d~~g~ 555 (795)
T 4a2l_A 510 RLWIGGE-EGLSVFKQEGL--------DI--QKASILPVSNVTKLFTNCIYEASNGI 555 (795)
T ss_dssp CEEEEES-SCEEEEEEETT--------EE--EECCCSCSCGGGGSCEEEEEECTTSC
T ss_pred CEEEEeC-CceEEEeCCCC--------eE--EEecCCCCCCCCCCeeEEEEECCCCC
Confidence 5666666 55888887653 11 111 2344688888777776
No 241
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.82 E-value=1e-06 Score=79.38 Aligned_cols=261 Identities=9% Similarity=0.024 Sum_probs=151.6
Q ss_pred ccCCCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEee----------CCCcEEEecCCCCCceeeeecCCCCccee
Q 041325 54 RKQAPAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGS----------SNGEIRAWNRDPNNYVNITSTDVGDHANV 121 (450)
Q Consensus 54 ~~~~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs----------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~ 121 (450)
........+.+.+.++... ..+ .+++ |+++|+.+. .++.|.++|..+.+............
T Consensus 100 ~VsVID~~t~~vv~~I~vG--~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r--- 172 (426)
T 3c75_H 100 QQFVIDGSTGRILGMTDGG--FLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPR--- 172 (426)
T ss_dssp EEEEEETTTTEEEEEEEEC--SSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCC---
T ss_pred eEEEEECCCCEEEEEEECC--CCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccc---
Confidence 3344556778888888853 234 6777 888888775 46789999999998776532210000
Q ss_pred EEecCCCceEEEEEeCCe--EEEEeC--CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEE
Q 041325 122 VATGNGDAVKSLVVLGDK--LFSAHQ--DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQ 197 (450)
Q Consensus 122 ~~~~h~~~v~~l~~~~~~--l~s~~~--dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (450)
.........+.+++|+ ++.+.. ++.|.+.|+.+.+.......... ....+.....+. ....++.+.
T Consensus 173 --~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-------~~~~p~g~~~~v-~~~~dG~~~ 242 (426)
T 3c75_H 173 --FLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-------YHIFPASPTVFY-MNCRDGSLA 242 (426)
T ss_dssp --CCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-------EEEEEEETTEEE-EEETTSSEE
T ss_pred --cccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-------eeeccCCCcEEE-EEcCCCCEE
Confidence 0012245678888877 666653 68899999999865443322110 001111111111 112222111
Q ss_pred -Eeecc--e-----eeeecCCCce-EEEEEccCCCEEEEEeCCCcEEEEecCCCeEE--EEeecc---------cccceE
Q 041325 198 -VRRHK--K-----CTWVHHVDTV-SALALSSDGSLLYSTSWDRTFKIWRTSDFRCL--ESVKNA---------HDDAIN 257 (450)
Q Consensus 198 -~~~~~--~-----~~~~~~~~~v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~---------~~~~v~ 257 (450)
+.... . ..+.-...++ ..+.+.+++..++.....+.|.+.|....... ..+... ......
T Consensus 243 ~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~ 322 (426)
T 3c75_H 243 RVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQ 322 (426)
T ss_dssp EEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSS
T ss_pred EEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCce
Confidence 11100 0 0010011111 23467888888777778899999998654322 111100 112223
Q ss_pred EEEEeecCCcEEEEEc---------CCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCC-EEEEee-CCC
Q 041325 258 AIVVSKSNDGFVYTGS---------ADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGT-VLYSGA-CDR 326 (450)
Q Consensus 258 ~~~~~~~~~~~l~~~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~g~-~dg 326 (450)
.++++++++.++++.. .++.|.++|..+.+ .+..+.. ......++|+|||+ ++++.. .++
T Consensus 323 ~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~k--------vv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~ 393 (426)
T 3c75_H 323 QTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGE--------RINKIEL-GHEIDSINVSQDAEPLLYALSAGTQ 393 (426)
T ss_dssp CEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCC--------EEEEEEE-EEEECEEEECCSSSCEEEEEETTTT
T ss_pred eeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCe--------EEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCC
Confidence 4688886665444432 23579999997766 4444432 23578999999999 888887 589
Q ss_pred cEEEEEcCCCceee
Q 041325 327 SILVWERDQGNYIV 340 (450)
Q Consensus 327 ~i~vwd~~~~~~~~ 340 (450)
.|.++|+.+++.+.
T Consensus 394 ~VsVID~~t~kvv~ 407 (426)
T 3c75_H 394 TLHIYDAATGEELR 407 (426)
T ss_dssp EEEEEETTTCCEEE
T ss_pred eEEEEECCCCCEEE
Confidence 99999999988663
No 242
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.80 E-value=1.6e-05 Score=65.01 Aligned_cols=202 Identities=12% Similarity=0.133 Sum_probs=124.8
Q ss_pred cceeeeEEeecCCCcceEEEEEeCCEEE-EeeCC--CcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC
Q 041325 62 EHQCSATLKVKGNSSYIPSLAIAGKLLY-GGSSN--GEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD 138 (450)
Q Consensus 62 ~~~~~~~l~~~~h~~~v~~~~~d~~~l~-tgs~d--g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 138 (450)
..+.++++. |.-......+.|++..|. +.+.+ ..|+++|+.+++......... ...--.++..++
T Consensus 8 ~~~v~~~~p-hd~~~ftqGL~~~~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-----------~~fgeGi~~~~~ 75 (243)
T 3mbr_X 8 GYRVVKRYP-HDTTAFTEGLFYLRGHLYESTGETGRSSVRKVDLETGRILQRAEVPP-----------PYFGAGIVAWRD 75 (243)
T ss_dssp CEEEEEEEE-CCTTCCEEEEEEETTEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-----------TCCEEEEEEETT
T ss_pred ceEEEEEcC-CCCccccccEEEECCEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-----------CcceeEEEEeCC
Confidence 446667763 233345778999655555 44554 489999999999877632211 112234566677
Q ss_pred eEEE-EeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEE
Q 041325 139 KLFS-AHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALA 217 (450)
Q Consensus 139 ~l~s-~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 217 (450)
.|+. .-.++.+.+||.++. +.+..++.. ..-..++
T Consensus 76 ~ly~ltw~~~~v~v~D~~tl----------------~~~~ti~~~----------------------------~~Gwglt 111 (243)
T 3mbr_X 76 RLIQLTWRNHEGFVYDLATL----------------TPRARFRYP----------------------------GEGWALT 111 (243)
T ss_dssp EEEEEESSSSEEEEEETTTT----------------EEEEEEECS----------------------------SCCCEEE
T ss_pred EEEEEEeeCCEEEEEECCcC----------------cEEEEEeCC----------------------------CCceEEe
Confidence 7444 456899999999988 333333311 1112333
Q ss_pred EccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccc----cceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc
Q 041325 218 LSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHD----DAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 218 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 293 (450)
+++..|+.+..++.|.++|..+.+.+..+..... ..++.+.+. +..+++..-.+..|.+.|.++++......
T Consensus 112 --~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~--~G~lyanvw~s~~I~vIDp~tG~V~~~id 187 (243)
T 3mbr_X 112 --SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV--NGELLANVWLTSRIARIDPASGKVVAWID 187 (243)
T ss_dssp --ECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE--TTEEEEEETTTTEEEEECTTTCBEEEEEE
T ss_pred --eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe--CCEEEEEECCCCeEEEEECCCCCEEEEEE
Confidence 4566666666789999999999998888763211 345677776 45455555568899999998877432211
Q ss_pred chhhh-hH----hhcccceEEEEEcCCCCEEEEee
Q 041325 294 HSLVQ-TL----EKHKSAVTALALSTDGTVLYSGA 323 (450)
Q Consensus 294 ~~~~~-~~----~~~~~~i~~l~~~~~~~~l~~g~ 323 (450)
...+. .. .....-.+.|+++|+++.|++.+
T Consensus 188 l~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 188 LQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp CGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred CCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 11111 11 11234678999999877666554
No 243
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.80 E-value=2.7e-06 Score=70.25 Aligned_cols=177 Identities=10% Similarity=0.035 Sum_probs=113.2
Q ss_pred eEEEEEccCCCEEEEEeCCC--cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc
Q 041325 213 VSALALSSDGSLLYSTSWDR--TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290 (450)
Q Consensus 213 v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 290 (450)
...+.|+ ++.++.+.+.+| .|+.+|+.+++.+..+.......-..++.. ++.+.+..-.++.+.+||..+.+
T Consensus 45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~--- 118 (262)
T 3nol_A 45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLR--- 118 (262)
T ss_dssp EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCC---
T ss_pred cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCc---
Confidence 4788998 677777777765 899999999999988863222222334544 66666677779999999997765
Q ss_pred cccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCc-cceEEEEEeC
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT-KAILCLAVVS 369 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~ 369 (450)
.+.++.... .-..++ +|++.|+....++.|.++|..+.+.+.... -...+.. ..++.+.|.+
T Consensus 119 -----~~~ti~~~~-eG~glt--~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~---------V~~~g~~~~~lNELe~~~ 181 (262)
T 3nol_A 119 -----QVRSFNYDG-EGWGLT--HNDQYLIMSDGTPVLRFLDPESLTPVRTIT---------VTAHGEELPELNELEWVD 181 (262)
T ss_dssp -----EEEEEECSS-CCCCEE--ECSSCEEECCSSSEEEEECTTTCSEEEEEE---------CEETTEECCCEEEEEEET
T ss_pred -----EEEEEECCC-CceEEe--cCCCEEEEECCCCeEEEEcCCCCeEEEEEE---------eccCCccccccceeEEEC
Confidence 444443221 113333 577777777778889999999877552110 0011111 2334566664
Q ss_pred CeEEEE-eCCCeEEEeeCCCCccccCCCceeEEEecCC------------CcceEEEEEEecCC
Q 041325 370 NLLFSG-SSDNTIRIWRRSSSVTDHQKGYSCLAVLEGH------------RRPVKCLTAVVDSD 420 (450)
Q Consensus 370 ~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h------------~~~v~~l~~~~~~~ 420 (450)
..|.+. -.++.|.+.|.+++ +.+..+... ....+.|+|.|+.+
T Consensus 182 G~lyan~w~~~~I~vIDp~tG--------~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~ 237 (262)
T 3nol_A 182 GEIFANVWQTNKIVRIDPETG--------KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHH 237 (262)
T ss_dssp TEEEEEETTSSEEEEECTTTC--------BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTT
T ss_pred CEEEEEEccCCeEEEEECCCC--------cEEEEEECCcCccccccccCcCCceEEEEEcCCCC
Confidence 444444 46888999999886 333333221 23568999999887
No 244
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.77 E-value=5.3e-06 Score=78.63 Aligned_cols=284 Identities=10% Similarity=0.038 Sum_probs=143.6
Q ss_pred EEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceE-EEEEeCCeEEEEeC------CCeEEEEE
Q 041325 81 LAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVK-SLVVLGDKLFSAHQ------DHKIRVWK 153 (450)
Q Consensus 81 ~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~l~s~~~------dg~i~iw~ 153 (450)
+++++..++.++.|+.|..+|..+++........... ....+. ......+.++.++. ++.|..+|
T Consensus 111 ~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~--------~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D 182 (571)
T 2ad6_A 111 LAYGAGQIVKKQANGHLLALDAKTGKINWEVEVCDPK--------VGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFD 182 (571)
T ss_dssp CEEETTEEEEECTTSEEEEEETTTCCEEEEEECCCGG--------GTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEE
T ss_pred cEEECCEEEEEeCCCEEEEEECCCCCEEEEecCCCCC--------ccceeccCCEEECCEEEEEecCCccCCCCEEEEEE
Confidence 4567888888999999999999999987664322100 000111 11123556666655 79999999
Q ss_pred cCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCC--
Q 041325 154 IDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWD-- 231 (450)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-- 231 (450)
.++++............... ..........+. -........+...... .+-......+++.++...++.+..+
T Consensus 183 ~~tG~~~W~~~~~~~~~~~~--~~p~~~~~~~~~--G~~~~g~~~w~~~~~~-~gg~~~w~~~a~d~~~g~vy~~~g~~~ 257 (571)
T 2ad6_A 183 LKTGELKWRAFATGSDDSVR--LAKDFNSANPHY--GQFGLGTKTWEGDAWK-IGGGTNWGWYAYDPKLNLFYYGSGNPA 257 (571)
T ss_dssp TTTCCEEEEEESSSCHHHHT--BCTTTTTTCGGG--CCSSHHHHTSSTTGGG-GCCCCCCSCCEEETTTTEEEEECCCCS
T ss_pred CCCCcEEEEEccCCCccccc--cCcccccccccc--cccccccccCccccee-cCCCCeeeeEEEcCCCCeEEEECCCCc
Confidence 99997654332211100000 000000000000 0000000000000000 0000011234566655556555432
Q ss_pred --------------CcEEEEecCCCeEEEEeeccccc-----ceEE---EEEeecCC--cEEEEEcCCCcEEEEeCcchh
Q 041325 232 --------------RTFKIWRTSDFRCLESVKNAHDD-----AINA---IVVSKSND--GFVYTGSADTKIKVWKKLRAA 287 (450)
Q Consensus 232 --------------g~i~iwd~~~~~~~~~~~~~~~~-----~v~~---~~~~~~~~--~~l~~~~~dg~i~vwd~~~~~ 287 (450)
+.|..+|..+++.+..++..+.. .+.. +....++. ..++.++.+|.+.++|..+++
T Consensus 258 ~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 337 (571)
T 2ad6_A 258 PWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGN 337 (571)
T ss_dssp CSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred cccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCC
Confidence 35999999999988877632210 1111 12112121 257788899999999998876
Q ss_pred hhccccchh-hh---hHh-hcccc--------------------------eEEEEEcCCCCEEEEee-------------
Q 041325 288 LQVNKKHSL-VQ---TLE-KHKSA--------------------------VTALALSTDGTVLYSGA------------- 323 (450)
Q Consensus 288 ~~~~~~~~~-~~---~~~-~~~~~--------------------------i~~l~~~~~~~~l~~g~------------- 323 (450)
..-...... .. .+. ....+ -..++++|+..++++..
T Consensus 338 ~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~ 417 (571)
T 2ad6_A 338 LIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLP 417 (571)
T ss_dssp EEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC
T ss_pred EEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccc
Confidence 321110000 00 000 00000 02467888877777654
Q ss_pred ------------------------CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCC
Q 041325 324 ------------------------CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDN 379 (450)
Q Consensus 324 ------------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg 379 (450)
.+|.|..||..+++.+...... ..... ..+...+.+++.++.||
T Consensus 418 ~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~---------~~~~~---~~~~t~gg~v~~g~~dg 485 (571)
T 2ad6_A 418 YRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK---------FAAWG---GTLYTKGGLVWYATLDG 485 (571)
T ss_dssp CCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES---------SCCCS---BCEEETTTEEEEECTTS
T ss_pred cccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC---------CCccc---eeEEECCCEEEEEcCCC
Confidence 3478899999888765321110 00011 11233467888899999
Q ss_pred eEEEeeCCCC
Q 041325 380 TIRIWRRSSS 389 (450)
Q Consensus 380 ~v~iwd~~~~ 389 (450)
.|+.||.+++
T Consensus 486 ~l~a~D~~tG 495 (571)
T 2ad6_A 486 YLKALDNKDG 495 (571)
T ss_dssp EEEEEETTTC
T ss_pred eEEEEECCCC
Confidence 9999999986
No 245
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.77 E-value=0.0001 Score=73.16 Aligned_cols=313 Identities=10% Similarity=0.045 Sum_probs=168.0
Q ss_pred cceEEEEEe-CCEEEEeeCCCcEEEecCCCCCceeeee-------cCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCC
Q 041325 76 SYIPSLAIA-GKLLYGGSSNGEIRAWNRDPNNYVNITS-------TDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQD 146 (450)
Q Consensus 76 ~~v~~~~~d-~~~l~tgs~dg~v~vw~~~~~~~~~~~~-------~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~d 146 (450)
..|.++..| ...|..|+..+-|.++|..+........ .... . ..-....|.++....++ |..|+.+
T Consensus 258 ~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~-~----~~l~~~~v~~i~~D~~g~lWigt~~ 332 (781)
T 3v9f_A 258 SYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDN-N----YSLSNASARYIFQDSFNNIWIGTWG 332 (781)
T ss_dssp CCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSS-T----TSBSSSCEEEEEECSSCCEEEEEBS
T ss_pred ceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCC-C----CCCCCCeEEEEEEeCCCCEEEEecC
Confidence 568888883 5567778775678889987766433211 0000 0 01234578999888666 8899888
Q ss_pred CeEEEEEcCCCceeEEecc------CcccccceeeeeeccCCCcceeEeeecCceEEEeecceeee-------ecCCCce
Q 041325 147 HKIRVWKIDNNTSAYYSTS------GKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTW-------VHHVDTV 213 (450)
Q Consensus 147 g~i~iw~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~v 213 (450)
+-|..++........+... .......+..+.. ..++.+.+....++...+.. ....+ ......|
T Consensus 333 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~--d~~g~lWigt~~~Gl~~~~~-~~~~~~~~~~~~~~~~~~v 409 (781)
T 3v9f_A 333 GGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCD--DGQGKLWIGTDGGGINVFEN-GKRVAIYNKENRELLSNSV 409 (781)
T ss_dssp SCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEE--CTTSCEEEEEBSSCEEEEET-TEEEEECC-----CCCSBE
T ss_pred CeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEE--cCCCCEEEEeCCCcEEEEEC-CCCeEEEccCCCCCCCcce
Confidence 8899999876654333211 1111111122211 11222322222233222221 11111 1234578
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEee-cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccc
Q 041325 214 SALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVK-NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNK 292 (450)
Q Consensus 214 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 292 (450)
.++...+++.+ ..|+.++-|..+|..+++...... ......|.++... .++.+..|+. +.|..||..+++.....
T Consensus 410 ~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d--~~g~lwigt~-~Gl~~~~~~~~~~~~~~ 485 (781)
T 3v9f_A 410 LCSLKDSEGNL-WFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYED--KNKKIWIGTH-AGVFVIDLASKKVIHHY 485 (781)
T ss_dssp EEEEECTTSCE-EEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEEC--TTSEEEEEET-TEEEEEESSSSSCCEEE
T ss_pred EEEEECCCCCE-EEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEEC--CCCCEEEEEC-CceEEEeCCCCeEEecc
Confidence 89988888764 457777779999988765433221 1134568887766 4556777776 55888987665421100
Q ss_pred cchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-e
Q 041325 293 KHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-L 371 (450)
Q Consensus 293 ~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~ 371 (450)
...........|.++...++|++.+ |+.++-|..||..+++... ...........|.++..+.+ .
T Consensus 486 ---~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~~----------~~~~~~l~~~~i~~i~~d~~g~ 551 (781)
T 3v9f_A 486 ---DTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQLVRK----------FNQYEGFCSNTINQIYRSSKGQ 551 (781)
T ss_dssp ---CTTTSSCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCCEEEE----------ECTTTTCSCSCEEEEEECTTSC
T ss_pred ---cCcccccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCCeEEE----------ccCCCCCCCCeeEEEEECCCCC
Confidence 0000001146789999998887554 5554448888887654321 00011112456888888743 5
Q ss_pred EEEEeCCCeEEEeeCCCCccccCCCceeEEEecC-CCcceEEEEEEecCC
Q 041325 372 LFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG-HRRPVKCLTAVVDSD 420 (450)
Q Consensus 372 l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~~ 420 (450)
|..|+.+|.|..||..++. ........+ ....|.++...+++.
T Consensus 552 lWi~T~~Glv~~~d~~~~~------~~~~~~~~gl~~~~i~~i~~d~~g~ 595 (781)
T 3v9f_A 552 MWLATGEGLVCFPSARNFD------YQVFQRKEGLPNTHIRAISEDKNGN 595 (781)
T ss_dssp EEEEETTEEEEESCTTTCC------CEEECGGGTCSCCCCCEEEECSSSC
T ss_pred EEEEECCCceEEECCCCCc------EEEccccCCCCCceEEEEEECCCCC
Confidence 6666667665889877531 111111111 123566777766665
No 246
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.70 E-value=5e-06 Score=74.21 Aligned_cols=206 Identities=11% Similarity=0.103 Sum_probs=120.4
Q ss_pred eCCEEE-EeeCCCcEEEecCCCC----CceeeeecCCCCcceeEEec-CCCceEEEEEeCCe-EEEEeCC------CeEE
Q 041325 84 AGKLLY-GGSSNGEIRAWNRDPN----NYVNITSTDVGDHANVVATG-NGDAVKSLVVLGDK-LFSAHQD------HKIR 150 (450)
Q Consensus 84 d~~~l~-tgs~dg~v~vw~~~~~----~~~~~~~~~~~~~~~~~~~~-h~~~v~~l~~~~~~-l~s~~~d------g~i~ 150 (450)
++++|+ +|..++.|.|.|+.+. +.........- ... ....-..+...|++ ++++..+ |.|.
T Consensus 94 ~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~------~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~ 167 (462)
T 2ece_A 94 ERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEV------KKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGIL 167 (462)
T ss_dssp CSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHH------HHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEE
T ss_pred cCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhc------ccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEE
Confidence 355555 5667899999998754 22222110000 000 01133445566776 3344333 6899
Q ss_pred EEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe-
Q 041325 151 VWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS- 229 (450)
Q Consensus 151 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 229 (450)
+.|.++.+. +...+... +-..--..+-|+|+++.+++..
T Consensus 168 vlD~~T~~v----------------~~~~~~~~------------------------~~~~~~Yd~~~~p~~~~mvsS~w 207 (462)
T 2ece_A 168 MLDHYSFEP----------------LGKWEIDR------------------------GDQYLAYDFWWNLPNEVLVSSEW 207 (462)
T ss_dssp EECTTTCCE----------------EEECCSBC------------------------TTCCCCCCEEEETTTTEEEECBC
T ss_pred EEECCCCeE----------------EEEEccCC------------------------CCccccceEEECCCCCEEEEccC
Confidence 999988733 22222110 0111233577899999888874
Q ss_pred ------------------CCCcEEEEecCCCeEEEEeecc-cccceEEEEE--eecCCcEEEEEc-----CCCcEEEEeC
Q 041325 230 ------------------WDRTFKIWRTSDFRCLESVKNA-HDDAINAIVV--SKSNDGFVYTGS-----ADTKIKVWKK 283 (450)
Q Consensus 230 ------------------~dg~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~--~~~~~~~l~~~~-----~dg~i~vwd~ 283 (450)
.+.+|.+||+.+++.+.++..+ .......+.| +|++...++++- .+++|.+|..
T Consensus 208 g~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~ 287 (462)
T 2ece_A 208 AVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFY 287 (462)
T ss_dssp CCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEE
T ss_pred cCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEe
Confidence 3689999999999888888743 2234556666 775554455555 6778887765
Q ss_pred cchhhhccccc-----hh---h----hhHhhcccceEEEEEcCCCCEEEEeeC-CCcEEEEEcCC
Q 041325 284 LRAALQVNKKH-----SL---V----QTLEKHKSAVTALALSTDGTVLYSGAC-DRSILVWERDQ 335 (450)
Q Consensus 284 ~~~~~~~~~~~-----~~---~----~~~~~~~~~i~~l~~~~~~~~l~~g~~-dg~i~vwd~~~ 335 (450)
..+........ +. + ..+.+.......|.+++||++|+++.. .+.|.+||+..
T Consensus 288 d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d 352 (462)
T 2ece_A 288 EDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISN 352 (462)
T ss_dssp ETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSS
T ss_pred cCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence 44321100000 00 0 111111345788999999999988776 67899999863
No 247
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.69 E-value=6.9e-06 Score=67.23 Aligned_cols=176 Identities=14% Similarity=0.022 Sum_probs=113.4
Q ss_pred ceEEEEEccCCCEEEEEeCC--CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhh
Q 041325 212 TVSALALSSDGSLLYSTSWD--RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQ 289 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 289 (450)
-...+.|+. +.++.+.+.+ ..|+.+|+.+++.+..+.......-..++.. ++.+....-.++.+.+||..+.+
T Consensus 22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~-- 96 (243)
T 3mbr_X 22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT-- 96 (243)
T ss_dssp CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE--
T ss_pred ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc--
Confidence 467899986 5566666654 4899999999999988863322222344444 66667777789999999997765
Q ss_pred ccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCc---cceEEEE
Q 041325 290 VNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT---KAILCLA 366 (450)
Q Consensus 290 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~ 366 (450)
.+.++.... .-..++ ++++.|+.+..++.|.++|..+.+.+... ....+. ..++.+.
T Consensus 97 ------~~~ti~~~~-~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I-----------~V~~~g~~~~~lNeLe 156 (243)
T 3mbr_X 97 ------PRARFRYPG-EGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSI-----------KVTAGGRPLDNLNELE 156 (243)
T ss_dssp ------EEEEEECSS-CCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEE-----------ECEETTEECCCEEEEE
T ss_pred ------EEEEEeCCC-CceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEE-----------EEccCCcccccceeeE
Confidence 444443222 224444 46777777777899999999987755211 111111 2345667
Q ss_pred EeCCeEE-EEeCCCeEEEeeCCCCccccCCCceeEEEecC-------------CCcceEEEEEEecCC
Q 041325 367 VVSNLLF-SGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG-------------HRRPVKCLTAVVDSD 420 (450)
Q Consensus 367 ~~~~~l~-s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-------------h~~~v~~l~~~~~~~ 420 (450)
+.+..|. ....+..|.+.|.+++ +.+..+.. -....+.|++.|+.+
T Consensus 157 ~~~G~lyanvw~s~~I~vIDp~tG--------~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~ 216 (243)
T 3mbr_X 157 WVNGELLANVWLTSRIARIDPASG--------KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHD 216 (243)
T ss_dssp EETTEEEEEETTTTEEEEECTTTC--------BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTT
T ss_pred EeCCEEEEEECCCCeEEEEECCCC--------CEEEEEECCcCccccccccCCcCCceEEEEEcCCCC
Confidence 7655444 4446788999999886 33333321 123568999999877
No 248
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=98.67 E-value=0.00032 Score=69.64 Aligned_cols=312 Identities=8% Similarity=0.079 Sum_probs=169.1
Q ss_pred cceEEEEEe-CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEEE
Q 041325 76 SYIPSLAIA-GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVWK 153 (450)
Q Consensus 76 ~~v~~~~~d-~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~ 153 (450)
..|.++..| ...|..|+.++-|..||..+++.......... . ..-....|.++....++ |..|+.+ -+.+||
T Consensus 163 ~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~---~--~~l~~~~i~~i~~d~~g~lwigt~~-Gl~~~d 236 (781)
T 3v9f_A 163 EQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHDPQN---P--NSLPGNDVRCIYKDTNGNIWIGTSK-GLALFN 236 (781)
T ss_dssp CCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEECC-------------CCSSEEEEEECTTCCEEEEETT-EEEEEE
T ss_pred cceEEEEECCCCCEEEEecCCCeEEEcCCCCceEeeecCCCC---c--ccCCCCceeEEEEcCCCCEEEEeCC-cHheEC
Confidence 457888874 66777787776688999877654332110000 0 00123568888887666 7777776 588999
Q ss_pred cCCCceeEEeccCcc-cccceeeeeeccC-CCcceeEeeecCceEEEeecce--eee---------------ecCCCceE
Q 041325 154 IDNNTSAYYSTSGKL-KNKYYERIATLPT-LNDRFTKCFLANNYVQVRRHKK--CTW---------------VHHVDTVS 214 (450)
Q Consensus 154 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~---------------~~~~~~v~ 214 (450)
..+.....+...... .......+..+.. .++.+.+....++...+..... ..+ .-....|.
T Consensus 237 ~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~ 316 (781)
T 3v9f_A 237 ANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASAR 316 (781)
T ss_dssp TTTTEEEC-----------CCCCEEEEEECTTSEEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEE
T ss_pred CCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEE
Confidence 877644322211100 0000011222211 2222222222133222211100 000 11345789
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEee--------cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcch
Q 041325 215 ALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVK--------NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 215 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 286 (450)
++...++|. |..|+.++-|..++........... ......|.++... .++.|..|+.++-|..||..++
T Consensus 317 ~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d--~~g~lWigt~~~Gl~~~~~~~~ 393 (781)
T 3v9f_A 317 YIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDD--GQGKLWIGTDGGGINVFENGKR 393 (781)
T ss_dssp EEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEEC--TTSCEEEEEBSSCEEEEETTEE
T ss_pred EEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEc--CCCCEEEEeCCCcEEEEECCCC
Confidence 999988886 5667777888999987654322111 0123468888776 4557778887777999997654
Q ss_pred hhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEE
Q 041325 287 ALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLA 366 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 366 (450)
..... ..........|.++...+++++ ..|+.++-|..+|..+++...- .........|.++.
T Consensus 394 ~~~~~-----~~~~~~~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~-----------~~~~~~~~~v~~i~ 456 (781)
T 3v9f_A 394 VAIYN-----KENRELLSNSVLCSLKDSEGNL-WFGTYLGNISYYNTRLKKFQII-----------ELEKNELLDVRVFY 456 (781)
T ss_dssp EEECC----------CCCSBEEEEEECTTSCE-EEEETTEEEEEECSSSCEEEEC-----------CSTTTCCCCEEEEE
T ss_pred eEEEc-----cCCCCCCCcceEEEEECCCCCE-EEEeccCCEEEEcCCCCcEEEe-----------ccCCCCCCeEEEEE
Confidence 31110 0001123467899998877764 4467667799999877653310 00012345788888
Q ss_pred EeCC-eEEEEeCCCeEEEeeCCCCccccCCCceeEEEec---CCCcceEEEEEEecCC
Q 041325 367 VVSN-LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLE---GHRRPVKCLTAVVDSD 420 (450)
Q Consensus 367 ~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~---~h~~~v~~l~~~~~~~ 420 (450)
.+.+ .|..|+. +.|..||..++. ........ .....|.++...+++.
T Consensus 457 ~d~~g~lwigt~-~Gl~~~~~~~~~------~~~~~~~~~~~~~~~~i~~i~~d~~g~ 507 (781)
T 3v9f_A 457 EDKNKKIWIGTH-AGVFVIDLASKK------VIHHYDTSNSQLLENFVRSIAQDSEGR 507 (781)
T ss_dssp ECTTSEEEEEET-TEEEEEESSSSS------CCEEECTTTSSCSCSCEEEEEECTTCC
T ss_pred ECCCCCEEEEEC-CceEEEeCCCCe------EEecccCcccccccceeEEEEEcCCCC
Confidence 8743 6666766 568889877531 11111111 1135688888777776
No 249
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.67 E-value=6.9e-05 Score=71.12 Aligned_cols=78 Identities=12% Similarity=0.164 Sum_probs=48.4
Q ss_pred eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEe
Q 041325 84 AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYS 163 (450)
Q Consensus 84 d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~ 163 (450)
.+..++.++.++.|..+|..+++.+............ ......-..+++.++.++.++.|+.|..+|.++++.....
T Consensus 67 ~~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~---~~~~~~~~g~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~ 143 (582)
T 1flg_A 67 SDGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIR---PCCDVVNRGAAIYGDKVFFGTLDASVVALNKNTGKVVWKK 143 (582)
T ss_dssp ETTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCC---CSSCSCCCCCEEETTEEEEEETTTEEEEEESSSCCEEEEE
T ss_pred ECCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccc---cccccCCCccEEECCEEEEEeCCCEEEEEECCCCCEEeee
Confidence 4555555555445999999999987764433211100 0000001233456777889999999999999999876554
Q ss_pred c
Q 041325 164 T 164 (450)
Q Consensus 164 ~ 164 (450)
.
T Consensus 144 ~ 144 (582)
T 1flg_A 144 K 144 (582)
T ss_dssp E
T ss_pred c
Confidence 3
No 250
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.66 E-value=1.9e-05 Score=69.21 Aligned_cols=257 Identities=10% Similarity=0.026 Sum_probs=143.5
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcc----e---eEEecCCCceEEEEEeC-Ce-EE
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHA----N---VVATGNGDAVKSLVVLG-DK-LF 141 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~----~---~~~~~h~~~v~~l~~~~-~~-l~ 141 (450)
+.-....++++ ++++++++..++.|..|+..++.............. . .........+..+++.+ +. |+
T Consensus 16 g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~ 95 (322)
T 2fp8_A 16 APSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLY 95 (322)
T ss_dssp CSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEE
T ss_pred CccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEE
Confidence 44345667777 577788888899999999877654332111000000 0 00000113578899985 44 77
Q ss_pred EEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-
Q 041325 142 SAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS- 220 (450)
Q Consensus 142 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 220 (450)
.+...+.|..+|..++.... +..... . ........+++.+
T Consensus 96 v~d~~~~i~~~d~~~g~~~~--------------~~~~~~-~------------------------~~~~~p~~i~~d~~ 136 (322)
T 2fp8_A 96 IVDCYYHLSVVGSEGGHATQ--------------LATSVD-G------------------------VPFKWLYAVTVDQR 136 (322)
T ss_dssp EEETTTEEEEECTTCEECEE--------------EESEET-T------------------------EECSCEEEEEECTT
T ss_pred EEECCCCEEEEeCCCCEEEE--------------ecccCC-C------------------------CcccccceEEEecC
Confidence 77666668888766442110 000000 0 0112467889999
Q ss_pred CCCEEEEEeC-----------------CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeC
Q 041325 221 DGSLLYSTSW-----------------DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKK 283 (450)
Q Consensus 221 ~~~~l~~~~~-----------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 283 (450)
+|++.++-.. ++.|..||..+++...... .....+.++++++++.++++-..++.|..|++
T Consensus 137 ~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~--~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~ 214 (322)
T 2fp8_A 137 TGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK--ELHVPGGAEVSADSSFVLVAEFLSHQIVKYWL 214 (322)
T ss_dssp TCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE--EESCCCEEEECTTSSEEEEEEGGGTEEEEEES
T ss_pred CCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEecc--CCccCcceEECCCCCEEEEEeCCCCeEEEEEC
Confidence 8886665432 3678889987776433322 23456778999755535555567789999998
Q ss_pred cchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC----------CCcEEEEEcCCCceeeeCCCCCCceeeec
Q 041325 284 LRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC----------DRSILVWERDQGNYIVDGDDDSGHMVLKG 353 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 353 (450)
...... ....... ..+ ...+++.++|++.++... .+.|..+|.. ++.+..+..+
T Consensus 215 ~~~~~~---~~~~~~~---~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~-------- 278 (322)
T 2fp8_A 215 EGPKKG---TAEVLVK---IPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLP-------- 278 (322)
T ss_dssp SSTTTT---CEEEEEE---CSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECC--------
T ss_pred CCCcCC---ccceEEe---CCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECC--------
Confidence 653210 0001111 123 678999999987666544 4668888864 5443211111
Q ss_pred cccCC-ccceEEEEEeCC-eEEEEeCCCeEEEeeCCC
Q 041325 354 ALRGH-TKAILCLAVVSN-LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 354 ~~~~~-~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~ 388 (450)
.+. -..++++.+.+. +.++...++.|..+++..
T Consensus 279 --~g~~~~~~~~~~~~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 279 --PPFAGEHFEQIQEHDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp --TTTTTSCCCEEEEETTEEEEECSSCSEEEEEEC--
T ss_pred --CCCccccceEEEEeCCEEEEeecCCCceEEEeccc
Confidence 010 233455556555 445555678898888764
No 251
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.66 E-value=8.9e-06 Score=77.07 Aligned_cols=212 Identities=12% Similarity=0.064 Sum_probs=116.9
Q ss_pred eCCEEEEeeC-CCcEEEecC-CCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeE
Q 041325 84 AGKLLYGGSS-NGEIRAWNR-DPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAY 161 (450)
Q Consensus 84 d~~~l~tgs~-dg~v~vw~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~ 161 (450)
.+..++.++. ++.|..+|. .+++.+............... .....-..++..++.++.++.|+.|..+|..+++...
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 61 IGDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVM-CCDVVDRGLAYGAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGC-TTCSCCCCCEEETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccc-cccccccccEEECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 4666666666 899999999 899987664332211000000 0000012234567778999999999999999985533
Q ss_pred EeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeC------CCcEE
Q 041325 162 YSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSW------DRTFK 235 (450)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~------dg~i~ 235 (450)
......... .......++ + .++ .+++++. ++.|.
T Consensus 140 ~~~~~~~~~----------------------------------~~~~~~~P~--v---~~g-~v~vg~~~~~~~~~g~v~ 179 (571)
T 2ad6_A 140 EVEVCDPKV----------------------------------GSTLTQAPF--V---AKD-TVLMGCSGAELGVRGAVN 179 (571)
T ss_dssp EEECCCGGG----------------------------------TCBCCSCCE--E---ETT-EEEEECBCGGGTCCCEEE
T ss_pred EecCCCCCc----------------------------------cceeccCCE--E---ECC-EEEEEecCCccCCCCEEE
Confidence 221110000 000001111 1 133 4555544 78999
Q ss_pred EEecCCCeEEEEeeccccc-------------------------------------ceEEEEEeecCCcEEEEEcCC---
Q 041325 236 IWRTSDFRCLESVKNAHDD-------------------------------------AINAIVVSKSNDGFVYTGSAD--- 275 (450)
Q Consensus 236 iwd~~~~~~~~~~~~~~~~-------------------------------------~v~~~~~~~~~~~~l~~~~~d--- 275 (450)
.+|..+++.+..+...... ....+++.+. .+.++.+..+
T Consensus 180 a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~-~g~vy~~~g~~~~ 258 (571)
T 2ad6_A 180 AFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPK-LNLFYYGSGNPAP 258 (571)
T ss_dssp EEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETT-TTEEEEECCCCSC
T ss_pred EEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCC-CCeEEEECCCCcc
Confidence 9999999988877522110 0012455553 3455555432
Q ss_pred -------------CcEEEEeCcchhhhccccchhhhh------HhhcccceEEEEEcCCCC---EEEEeeCCCcEEEEEc
Q 041325 276 -------------TKIKVWKKLRAALQVNKKHSLVQT------LEKHKSAVTALALSTDGT---VLYSGACDRSILVWER 333 (450)
Q Consensus 276 -------------g~i~vwd~~~~~~~~~~~~~~~~~------~~~~~~~i~~l~~~~~~~---~l~~g~~dg~i~vwd~ 333 (450)
+.|..+|.++++.. +..... +.....++. +....+|+ .++.++.+|.++++|.
T Consensus 259 ~~~~~~~gd~~y~~~v~Ald~~tG~~~----W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~ 333 (571)
T 2ad6_A 259 WNETMRPGDNKWTMTIWGRDLDTGMAK----WGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNR 333 (571)
T ss_dssp SCGGGSCSCCTTTTEEEEEETTTCCEE----EEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEET
T ss_pred ccCCccCCCceeEEEEEEEecCCCcEE----EEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEEC
Confidence 35888998887621 111000 001112221 23334674 6778899999999999
Q ss_pred CCCceeeeC
Q 041325 334 DQGNYIVDG 342 (450)
Q Consensus 334 ~~~~~~~~~ 342 (450)
.+++.+...
T Consensus 334 ~tG~~~w~~ 342 (571)
T 2ad6_A 334 ENGNLIVAE 342 (571)
T ss_dssp TTCCEEEEE
T ss_pred CCCCEEeee
Confidence 999987654
No 252
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.64 E-value=4.9e-06 Score=68.70 Aligned_cols=175 Identities=9% Similarity=0.053 Sum_probs=114.6
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccc
Q 041325 213 VSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNK 292 (450)
Q Consensus 213 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 292 (450)
...+.|+ ++.++.+.+.+|.|+.+|+++++.+..+ .........+++. ++.+.+..-.++.+.+||..+.+
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~----- 127 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQ----- 127 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTE-----
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCc-----
Confidence 4788887 4667777788899999999999988877 2332222335554 56677777789999999997766
Q ss_pred cchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCc---cceEEEEEeC
Q 041325 293 KHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHT---KAILCLAVVS 369 (450)
Q Consensus 293 ~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~ 369 (450)
.+.++... ..-..++ +|++.|+.+..++.|+++|..+.+.+... ....+. ..++.+.|..
T Consensus 128 ---~~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I-----------~V~~~g~~v~~lNeLe~~d 190 (268)
T 3nok_A 128 ---RERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAV-----------QVKLRGQPVELINELECAN 190 (268)
T ss_dssp ---EEEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEE-----------ECEETTEECCCEEEEEEET
T ss_pred ---EEEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEE-----------EeCCCCcccccccccEEeC
Confidence 34444322 2223444 46888888878999999999987755211 111111 2345667764
Q ss_pred CeEEEEe-CCCeEEEeeCCCCccccCCCceeEEEecC-------------CCcceEEEEEEecCCC
Q 041325 370 NLLFSGS-SDNTIRIWRRSSSVTDHQKGYSCLAVLEG-------------HRRPVKCLTAVVDSDY 421 (450)
Q Consensus 370 ~~l~s~~-~dg~v~iwd~~~~~~~~~~~~~~~~~~~~-------------h~~~v~~l~~~~~~~~ 421 (450)
..|.+.. .++.|.+.|.+++ +.+..+.- -....+.|++.|+.+.
T Consensus 191 G~lyanvw~s~~I~vIDp~TG--------~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~r 248 (268)
T 3nok_A 191 GVIYANIWHSSDVLEIDPATG--------TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGR 248 (268)
T ss_dssp TEEEEEETTCSEEEEECTTTC--------BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCC
T ss_pred CEEEEEECCCCeEEEEeCCCC--------cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCE
Confidence 4444444 6788999999886 33333321 1235689999998773
No 253
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=98.64 E-value=1.9e-05 Score=70.60 Aligned_cols=193 Identities=10% Similarity=0.101 Sum_probs=112.6
Q ss_pred eEEEEEccCCCEEEEEeCC------CcEEEEecCCCeEEEEeecccc--cceEEEEEeecCCcEEEEEc-----------
Q 041325 213 VSALALSSDGSLLYSTSWD------RTFKIWRTSDFRCLESVKNAHD--DAINAIVVSKSNDGFVYTGS----------- 273 (450)
Q Consensus 213 v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~~----------- 273 (450)
-..+...|+| +++++..+ |.|.++|.++++.+..+..... ..-..+.|+|..+ .+++..
T Consensus 140 Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~ 217 (462)
T 2ece_A 140 LHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGL 217 (462)
T ss_dssp EEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCC
T ss_pred ccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCC-EEEEccCcCcccccccc
Confidence 4557778998 66666555 7899999999999998863211 2234577888555 666663
Q ss_pred --------CCCcEEEEeCcchhhhccccchhhhhHhh--cccceEEEEE--cCCCCEEEEeeC------CCcEEEEEcCC
Q 041325 274 --------ADTKIKVWKKLRAALQVNKKHSLVQTLEK--HKSAVTALAL--STDGTVLYSGAC------DRSILVWERDQ 335 (450)
Q Consensus 274 --------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~i~~l~~--~~~~~~l~~g~~------dg~i~vwd~~~ 335 (450)
....|.+||+.+++ .+..+.. .......+.| +|+++++++++. +++|.+|....
T Consensus 218 ~~~~~~~~~~d~V~v~D~~~~k--------~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~ 289 (462)
T 2ece_A 218 KLEHLKDRYGNRIHFWDLRKRK--------RIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYED 289 (462)
T ss_dssp CTTTHHHHSCCEEEEEETTTTE--------EEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEET
T ss_pred chhhhhhccCCEEEEEECCCCc--------EeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecC
Confidence 47899999997654 3333322 1133455656 999999888774 56888877665
Q ss_pred Cceee----eCCCCCCceeee---ccccCCccceEEEEEe--CCeEEEE-eCCCeEEEeeCCCCccccCCCceeEEEecC
Q 041325 336 GNYIV----DGDDDSGHMVLK---GALRGHTKAILCLAVV--SNLLFSG-SSDNTIRIWRRSSSVTDHQKGYSCLAVLEG 405 (450)
Q Consensus 336 ~~~~~----~~~~~~~~~~~~---~~~~~~~~~v~~~~~~--~~~l~s~-~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 405 (450)
++... ..........+. ..+.+-......|.++ +++|.++ -..+.|.+||+... ...+.+..+.-
T Consensus 290 g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~-----~~~~lv~~I~t 364 (462)
T 2ece_A 290 GKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNP-----FKPVLTGKVKL 364 (462)
T ss_dssp TEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSST-----TSCEEEEEEEC
T ss_pred CceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCC-----CCcEEEEEEEe
Confidence 43210 000000000000 0000001234566666 4455544 44789999998642 12344444322
Q ss_pred CC--------------cceEEEEEEecCC
Q 041325 406 HR--------------RPVKCLTAVVDSD 420 (450)
Q Consensus 406 h~--------------~~v~~l~~~~~~~ 420 (450)
.. ..-..++++||++
T Consensus 365 GG~~~~~~~~~G~~~~ggPr~~~lSpDGk 393 (462)
T 2ece_A 365 GGIFHRADHPAGHKLTGAPQMLEISRDGR 393 (462)
T ss_dssp BTTTTCBCCTTSCCCCSCCCCEEECTTSS
T ss_pred CCeeccccccccccCCCCCCEEEEcCCCC
Confidence 10 1257889999998
No 254
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.61 E-value=2.5e-05 Score=74.02 Aligned_cols=275 Identities=11% Similarity=0.102 Sum_probs=139.0
Q ss_pred EEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceE-EEEEeCCeEEEEe------CCCeEEEEEcCCCcee
Q 041325 88 LYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVK-SLVVLGDKLFSAH------QDHKIRVWKIDNNTSA 160 (450)
Q Consensus 88 l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~l~~~~~~l~s~~------~dg~i~iw~~~~~~~~ 160 (450)
++.++.|+.|..+|..+++.+......... ....+. .-....+.++.++ .+|.|+.+|.++++..
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~--------~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~ 195 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIK--------VGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQV 195 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGG--------GTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEE
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCC--------ccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEE
Confidence 888889999999999999987663322100 000111 1112355666665 3899999999999765
Q ss_pred EEeccCcccccc-eeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCce-EEEEEccCCCEEEEEeCC-------
Q 041325 161 YYSTSGKLKNKY-YERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTV-SALALSSDGSLLYSTSWD------- 231 (450)
Q Consensus 161 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~~~d------- 231 (450)
............ ........ ...+.. .......+... .+..-...+ ..+++.++..+++.+..+
T Consensus 196 W~~~~~~~~~~~~~~p~~~~~--~~~~g~---~~~g~~tw~g~--~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~ 268 (599)
T 1w6s_A 196 WRAYATGPDKDLLLASDFNIK--NPHYGQ---KGLGTGTWEGD--AWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNET 268 (599)
T ss_dssp EEEESSSCHHHHTBCTTTTTT--CGGGCC---TTHHHHTSSTT--GGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGG
T ss_pred EEEcCCCCccccccccccccc--cccccc---cccccccCCCc--ceecCCCccccceeEeCCCCEEEEeCCCCccccCc
Confidence 433222110000 00000000 000000 00000000000 000000011 134566666667766554
Q ss_pred ---------CcEEEEecCCCeEEEEeeccccc--------ceEEEEEe-ecCC--cEEEEEcCCCcEEEEeCcchhhhcc
Q 041325 232 ---------RTFKIWRTSDFRCLESVKNAHDD--------AINAIVVS-KSND--GFVYTGSADTKIKVWKKLRAALQVN 291 (450)
Q Consensus 232 ---------g~i~iwd~~~~~~~~~~~~~~~~--------~v~~~~~~-~~~~--~~l~~~~~dg~i~vwd~~~~~~~~~ 291 (450)
+.|..+|.++++.+-.++..+.. ...-+... .+++ ..++.++.+|.+.++|.++++....
T Consensus 269 ~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~ 348 (599)
T 1w6s_A 269 MRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA 348 (599)
T ss_dssp GSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred ccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeec
Confidence 47999999999998887743321 11111221 1121 3577789999999999988763211
Q ss_pred ccchhhhh----Hh-hcc--------------------------cceEEEEEcCCCCEEEEee-----------------
Q 041325 292 KKHSLVQT----LE-KHK--------------------------SAVTALALSTDGTVLYSGA----------------- 323 (450)
Q Consensus 292 ~~~~~~~~----~~-~~~--------------------------~~i~~l~~~~~~~~l~~g~----------------- 323 (450)
........ .. ... ..-..++++|+..++++..
T Consensus 349 ~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g 428 (599)
T 1w6s_A 349 NKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAG 428 (599)
T ss_dssp EESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTT
T ss_pred ccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCC
Confidence 11000000 00 000 0012456777666655432
Q ss_pred ----------------------CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeE
Q 041325 324 ----------------------CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTI 381 (450)
Q Consensus 324 ----------------------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v 381 (450)
.+|.|..||+.+++.+..... ...... -.+...+.+++.++.||.+
T Consensus 429 ~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~---------~~~~~~---g~~~tagg~vf~gt~dg~l 496 (599)
T 1w6s_A 429 QFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME---------RFAVWG---GTMATAGDLVFYGTLDGYL 496 (599)
T ss_dssp SCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE---------SSCCCS---BCEEETTTEEEEECTTSEE
T ss_pred cceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecC---------CCCccC---cceEecCCEEEEECCCCeE
Confidence 346788888888876532111 000111 1234457788889999999
Q ss_pred EEeeCCCC
Q 041325 382 RIWRRSSS 389 (450)
Q Consensus 382 ~iwd~~~~ 389 (450)
+.||.+++
T Consensus 497 ~A~D~~tG 504 (599)
T 1w6s_A 497 KARDSDTG 504 (599)
T ss_dssp EEEETTTC
T ss_pred EEEECCCC
Confidence 99999987
No 255
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=98.61 E-value=6.6e-06 Score=72.85 Aligned_cols=252 Identities=6% Similarity=-0.065 Sum_probs=139.8
Q ss_pred CCCCccceeeeEEeecCCCcceEEEEE--eCCEEEEee----------CCCcEEEecCCCCCceeeeecCCCCcceeEEe
Q 041325 57 APAASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGS----------SNGEIRAWNRDPNNYVNITSTDVGDHANVVAT 124 (450)
Q Consensus 57 ~~~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs----------~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~ 124 (450)
.....+++.+.++.. |. .+ .+.+ |+++++.+. .++.|.+||+.+++............. .
T Consensus 50 vID~~t~~v~~~i~v-G~-~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~---~- 121 (368)
T 1mda_H 50 VSCAGCGVTLGHSLG-AF-LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRF---S- 121 (368)
T ss_dssp EEETTTTEEEEEEEE-CT-TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSC---C-
T ss_pred EEECCCCeEEEEEeC-CC-CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCcccc---c-
Confidence 455678899999985 33 34 5777 888888876 368999999999998776321100000 0
Q ss_pred cCCCceEEEEEeCCe--EEEEeC--CCeEEE--EEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCc-eEE
Q 041325 125 GNGDAVKSLVVLGDK--LFSAHQ--DHKIRV--WKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANN-YVQ 197 (450)
Q Consensus 125 ~h~~~v~~l~~~~~~--l~s~~~--dg~i~i--w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 197 (450)
.......++++||+ ++.+.. +..|.+ +|..+ .... .... +....+.....+. ....++ ...
T Consensus 122 -~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t--v~~i-~v~~-------~~~~~p~g~~~~~-~~~~dg~~~~ 189 (368)
T 1mda_H 122 -VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD--DQLT-KSAS-------CFHIHPGAAATHY-LGSCPASLAA 189 (368)
T ss_dssp -BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE--EEEE-ECSS-------CCCCEEEETTEEE-CCCCTTSCEE
T ss_pred -cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh--ceEE-ECCC-------ceEEccCCCeEEE-EEcCCCCEEE
Confidence 01245678899887 666654 467888 88876 1111 1110 0001111111111 111111 111
Q ss_pred Eeecc----eee--------eecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCC--eEEEEeecc---------ccc
Q 041325 198 VRRHK----KCT--------WVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDF--RCLESVKNA---------HDD 254 (450)
Q Consensus 198 ~~~~~----~~~--------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~---------~~~ 254 (450)
+.... ... +.-...+. . .+++..++..+. +.+.+.|.... +.+..+... ...
T Consensus 190 vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~ 264 (368)
T 1mda_H 190 SDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSA 264 (368)
T ss_dssp EECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEEC
T ss_pred EECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccC
Confidence 11110 000 00011222 3 555666666666 99999998653 233322210 111
Q ss_pred ceEEEEEeecCCcEEEEEc---C-----CCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCC-EEEEee-C
Q 041325 255 AINAIVVSKSNDGFVYTGS---A-----DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGT-VLYSGA-C 324 (450)
Q Consensus 255 ~v~~~~~~~~~~~~l~~~~---~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~-~l~~g~-~ 324 (450)
....+.++++++.++++.. . ++.+.++|+.+.+ .+..+... .....++|+|||+ ++++.. .
T Consensus 265 g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~--------vv~~i~vg-~~p~gi~~s~Dg~~l~va~~~~ 335 (368)
T 1mda_H 265 GFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQ--------TSGPISNG-HDSDAIIAAQDGASDNYANSAG 335 (368)
T ss_dssp SSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCC--------EEECCEEE-EEECEEEECCSSSCEEEEEETT
T ss_pred cceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCe--------EEEEEECC-CCcceEEECCCCCEEEEEccCC
Confidence 2223678886664554433 2 2456699997766 44454433 3578999999998 455555 5
Q ss_pred CCcEEEEEcCCCceeeeC
Q 041325 325 DRSILVWERDQGNYIVDG 342 (450)
Q Consensus 325 dg~i~vwd~~~~~~~~~~ 342 (450)
++.|.++|+.+++.+...
T Consensus 336 ~~~VsVID~~t~kvv~~I 353 (368)
T 1mda_H 336 TEVLDIYDAASDQDQSSV 353 (368)
T ss_dssp TTEEEEEESSSCEEEEEC
T ss_pred CCeEEEEECCCCcEEEEE
Confidence 999999999999877433
No 256
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.57 E-value=5.3e-06 Score=76.78 Aligned_cols=285 Identities=12% Similarity=0.117 Sum_probs=154.6
Q ss_pred EEEeeCCCcEEEecCCCCCceeeeecCCCCc---------ceeEEe------------cCC------Cc--eEEEEEe--
Q 041325 88 LYGGSSNGEIRAWNRDPNNYVNITSTDVGDH---------ANVVAT------------GNG------DA--VKSLVVL-- 136 (450)
Q Consensus 88 l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~---------~~~~~~------------~h~------~~--v~~l~~~-- 136 (450)
|.||+..|.|+|+-+.+++.+.......... ...++. .+. +. -..+.+.
T Consensus 18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g 97 (595)
T 1fwx_A 18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG 97 (595)
T ss_dssp EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence 6688899999999999888776644332110 000000 011 11 1344442
Q ss_pred -CCe---EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCc
Q 041325 137 -GDK---LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDT 212 (450)
Q Consensus 137 -~~~---l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (450)
+|+ +++...++.|.+.|+++.+... +..++. ...
T Consensus 98 ~~DG~~lfVnd~~~~rVavIdl~t~~~~~--------------ii~ip~----------------------------g~~ 135 (595)
T 1fwx_A 98 KYDGRFLFMNDKANTRVARVRCDVMKCDA--------------ILEIPN----------------------------AKG 135 (595)
T ss_dssp EEEEEEEEEEETTTTEEEEEETTTTEEEE--------------EEECSS----------------------------CCS
T ss_pred CcCCCEEEEEcCCCCEEEEEECCCceEee--------------EEeCCC----------------------------CCC
Confidence 122 5555557789999999984321 112321 124
Q ss_pred eEEEEE-c-cCCCEEEEEe------------------CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEE
Q 041325 213 VSALAL-S-SDGSLLYSTS------------------WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTG 272 (450)
Q Consensus 213 v~~~~~-~-~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 272 (450)
...+++ . |+++++++++ .++.+.+.|..+.+...++.-+ +....++++|+++ ++++.
T Consensus 136 phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vg--g~pd~~~~spdGk-~~~vt 212 (595)
T 1fwx_A 136 IHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVS--GNLDNCDADYEGK-WAFST 212 (595)
T ss_dssp EEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEES--SCCCCEEECSSSS-EEEEE
T ss_pred CcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeC--CCccceEECCCCC-EEEEE
Confidence 566776 4 7888887774 2467999999999988888732 2456777888555 55544
Q ss_pred cCC---------------CcEEEEeCcchhhhc--c-------------cc--chh-hhhHhhcccceEEEEEcCCCCEE
Q 041325 273 SAD---------------TKIKVWKKLRAALQV--N-------------KK--HSL-VQTLEKHKSAVTALALSTDGTVL 319 (450)
Q Consensus 273 ~~d---------------g~i~vwd~~~~~~~~--~-------------~~--~~~-~~~~~~~~~~i~~l~~~~~~~~l 319 (450)
+.+ ..|.+.|....+... . .. ... +..+. -.....++.++|||+++
T Consensus 213 ~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v 291 (595)
T 1fwx_A 213 SYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHL 291 (595)
T ss_dssp ESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEE
T ss_pred ecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEE
Confidence 433 234455443321100 0 00 001 11111 12345678999999987
Q ss_pred EEee-CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--eEEEEeCCCeEEEeeCCCCcc--ccC
Q 041325 320 YSGA-CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--LLFSGSSDNTIRIWRRSSSVT--DHQ 394 (450)
Q Consensus 320 ~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~--~~~ 394 (450)
++++ .+.+|.++|+.+.+......-.... ........ ......++|+++ ...+...|+.|.+||+..... ...
T Consensus 292 ~V~~~~s~~VsVid~~~~~~~~~~~l~~~~-~v~~~v~v-G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~ 369 (595)
T 1fwx_A 292 CVAGKLSPTVTVLDVTRFDAVFYENADPRS-AVVAEPEL-GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGE 369 (595)
T ss_dssp EEECTTSSBEEEEEGGGHHHHHHSCCCGGG-GEEECCBC-CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTC
T ss_pred EEeCCCCCeEEEEECcccccccccccCccc-ceEEEcCC-CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhccc
Confidence 7665 5789999999965311100000000 01111111 233577888754 455677899999999876210 001
Q ss_pred CCceeEEEecCCCcce-----EEEEEEecCC
Q 041325 395 KGYSCLAVLEGHRRPV-----KCLTAVVDSD 420 (450)
Q Consensus 395 ~~~~~~~~~~~h~~~v-----~~l~~~~~~~ 420 (450)
+..+.+..+..|-.+- ..+.++||++
T Consensus 370 ~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk 400 (595)
T 1fwx_A 370 KVDPIKDKLDVHYQPGHLKTVMGETLDATND 400 (595)
T ss_dssp SCCCEEEEEECSSCEEEEEETTTTSTTCCSS
T ss_pred ccceeEEEeecccccccceeccceEeCCCCC
Confidence 2235566666554432 1223466776
No 257
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.55 E-value=0.00012 Score=62.01 Aligned_cols=197 Identities=12% Similarity=0.110 Sum_probs=117.8
Q ss_pred ceEEEEEe--CCE-EEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC--eEEE-EeCCCeEE
Q 041325 77 YIPSLAIA--GKL-LYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD--KLFS-AHQDHKIR 150 (450)
Q Consensus 77 ~v~~~~~d--~~~-l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~l~s-~~~dg~i~ 150 (450)
.+..+++| +.. +++-..++.|.+++.++...... ..........+++.++ .++. -...+.|.
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~------------~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~ 104 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTI------------IRQDLGSPEGIALDHLGRTIFWTDSQLDRIE 104 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEE------------ECTTCCCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEE------------EECCCCCccEEEEEecCCeEEEEECCCCEEE
Confidence 46788884 444 44555678999999876653322 1122246788899863 3444 44567888
Q ss_pred EEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeC
Q 041325 151 VWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSW 230 (450)
Q Consensus 151 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 230 (450)
+++++...... + .. ........++++|++..|+.+..
T Consensus 105 ~~~~~g~~~~~--------------~--~~---------------------------~~~~~P~~i~vd~~~g~lyv~~~ 141 (267)
T 1npe_A 105 VAKMDGTQRRV--------------L--FD---------------------------TGLVNPRGIVTDPVRGNLYWTDW 141 (267)
T ss_dssp EEETTSCSCEE--------------E--EC---------------------------SSCSSEEEEEEETTTTEEEEEEC
T ss_pred EEEcCCCCEEE--------------E--EE---------------------------CCCCCccEEEEeeCCCEEEEEEC
Confidence 88886542100 0 00 01124678999996655555543
Q ss_pred ---CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccce
Q 041325 231 ---DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAV 307 (450)
Q Consensus 231 ---dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i 307 (450)
.+.|..+++.. +....+..........++++++++.++++-...+.|.++|...... ..... .....
T Consensus 142 ~~~~~~I~~~~~dg-~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~--------~~~~~-~~~~P 211 (267)
T 1npe_A 142 NRDNPKIETSHMDG-TNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR--------RKVLE-GLQYP 211 (267)
T ss_dssp CSSSCEEEEEETTS-CCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE--------EEEEE-CCCSE
T ss_pred CCCCcEEEEEecCC-CCcEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCce--------EEEec-CCCCc
Confidence 36888888764 3233332123346788999986665677777788999999865431 01111 12334
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEEcCCCcee
Q 041325 308 TALALSTDGTVLYSGACDRSILVWERDQGNYI 339 (450)
Q Consensus 308 ~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~ 339 (450)
..++.. ++.++++...++.|.++|..+++.+
T Consensus 212 ~gi~~d-~~~lyva~~~~~~v~~~d~~~g~~~ 242 (267)
T 1npe_A 212 FAVTSY-GKNLYYTDWKTNSVIAMDLAISKEM 242 (267)
T ss_dssp EEEEEE-TTEEEEEETTTTEEEEEETTTTEEE
T ss_pred eEEEEe-CCEEEEEECCCCeEEEEeCCCCCce
Confidence 566664 3444444445689999999988755
No 258
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.49 E-value=1.4e-05 Score=77.45 Aligned_cols=272 Identities=12% Similarity=0.069 Sum_probs=136.6
Q ss_pred eCCEEEEeeCCC-----------cEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--EEEEeC-CCeE
Q 041325 84 AGKLLYGGSSNG-----------EIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK--LFSAHQ-DHKI 149 (450)
Q Consensus 84 d~~~l~tgs~dg-----------~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~--l~s~~~-dg~i 149 (450)
++++++.|+.++ .+.+||..+++...... ....+.....++++..+. ++.|+. ++.+
T Consensus 197 ~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~---------~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v 267 (656)
T 1k3i_A 197 SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV---------TVTKHDMFCPGISMDGNGQIVVTGGNDAKKT 267 (656)
T ss_dssp TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE---------EECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred CCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc---------cCCCCCCccccccCCCCCCEEEeCCCCCCce
Confidence 788888887543 58899998876443311 111233334455665433 667764 5679
Q ss_pred EEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe
Q 041325 150 RVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS 229 (450)
Q Consensus 150 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 229 (450)
.+||..+.+- ..+..++ ....-.+++..+++++++.|+
T Consensus 268 ~~yd~~t~~W--------------~~~~~~~----------------------------~~R~~~s~~~~~dg~iyv~GG 305 (656)
T 1k3i_A 268 SLYDSSSDSW--------------IPGPDMQ----------------------------VARGYQSSATMSDGRVFTIGG 305 (656)
T ss_dssp EEEEGGGTEE--------------EECCCCS----------------------------SCCSSCEEEECTTSCEEEECC
T ss_pred EEecCcCCce--------------eECCCCC----------------------------ccccccceEEecCCeEEEEeC
Confidence 9999887631 1111111 111123455567889999988
Q ss_pred -CC-----CcEEEEecCCCeEEEEee---cccccceEEEEEeecCCcEEEEEcCC---------CcEEEEeCcchhhhcc
Q 041325 230 -WD-----RTFKIWRTSDFRCLESVK---NAHDDAINAIVVSKSNDGFVYTGSAD---------TKIKVWKKLRAALQVN 291 (450)
Q Consensus 230 -~d-----g~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~l~~~~~d---------g~i~vwd~~~~~~~~~ 291 (450)
.+ ..+.+||..+.+-...-. ......-....+.. ++..++.++.+ ..+..||..+....
T Consensus 306 ~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~-~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~-- 382 (656)
T 1k3i_A 306 SWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS-DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDV-- 382 (656)
T ss_dssp CCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT-TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEE--
T ss_pred cccCCcccccceEeCCCCCcceeCCCccccccccccccceeec-CCceEEEECCCCcEEEecCccceeeeecCCccee--
Confidence 34 569999998765332200 00000000000111 22334444444 35677887654311
Q ss_pred ccchhhhhHhh------cccceEEEEEcC-CCCEEEEeeCCC-----------cEEEEEcCCCceeeeCCCCCCceeeec
Q 041325 292 KKHSLVQTLEK------HKSAVTALALST-DGTVLYSGACDR-----------SILVWERDQGNYIVDGDDDSGHMVLKG 353 (450)
Q Consensus 292 ~~~~~~~~~~~------~~~~i~~l~~~~-~~~~l~~g~~dg-----------~i~vwd~~~~~~~~~~~~~~~~~~~~~ 353 (450)
........ ....-.++.|.. ++++++.|+.++ .|.+||..+.+..... ..
T Consensus 383 ---~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~---------~~ 450 (656)
T 1k3i_A 383 ---KSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFA---------SN 450 (656)
T ss_dssp ---EEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEEC---------TT
T ss_pred ---ecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEc---------cC
Confidence 00000000 011223444433 778888887543 5777887765433110 00
Q ss_pred cccCCccceEEEEE-eCCeEEEEeCC-----------CeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCC
Q 041325 354 ALRGHTKAILCLAV-VSNLLFSGSSD-----------NTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDY 421 (450)
Q Consensus 354 ~~~~~~~~v~~~~~-~~~~l~s~~~d-----------g~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~ 421 (450)
.+......-.++.. ++.+++.|+.+ ..+.+||..+. .+..+..+...........+.++++
T Consensus 451 ~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~------~W~~~~~~~~~R~~hs~a~ll~dg~- 523 (656)
T 1k3i_A 451 GLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD------TFYKQNPNSIVRVYHSISLLLPDGR- 523 (656)
T ss_dssp CCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT------EEEECCCCSSCCCTTEEEEECTTSC-
T ss_pred CCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC------ceeecCCCCCccccccHhhcCCCcE-
Confidence 11111111233334 56688888754 45889998753 2333322222222233445567887
Q ss_pred CCCCCCCCCceEEEEEccc
Q 041325 422 SNRNSDHSSTSFLVYSGSL 440 (450)
Q Consensus 422 ~~~~~~~~~~~~~l~s~~~ 440 (450)
+++.||.
T Consensus 524 ------------v~v~GG~ 530 (656)
T 1k3i_A 524 ------------VFNGGGG 530 (656)
T ss_dssp ------------EEEEECC
T ss_pred ------------EEecCCC
Confidence 8888885
No 259
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.48 E-value=0.00026 Score=61.95 Aligned_cols=191 Identities=10% Similarity=0.054 Sum_probs=106.9
Q ss_pred ceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCeEEEEeec----ccccceEEEEEee-cCCcEEEEEcC-----------
Q 041325 212 TVSALALSS-DGSLLYSTSWDRTFKIWRTSDFRCLESVKN----AHDDAINAIVVSK-SNDGFVYTGSA----------- 274 (450)
Q Consensus 212 ~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~v~~~~~~~-~~~~~l~~~~~----------- 274 (450)
.+..+++.+ +++ |+.+...+.|..+|..+++. ..+.. ......+.+++.+ ++. +.++...
T Consensus 81 ~p~gi~~~~~~g~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~ 157 (322)
T 2fp8_A 81 RTYDISYNLQNNQ-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQI 157 (322)
T ss_dssp CEEEEEEETTTTE-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHH
T ss_pred CCceEEEcCCCCc-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE-EEEECCccccccccccee
Confidence 468899997 565 55555455688888875532 22210 1113467788886 433 4443322
Q ss_pred ------CCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEe-eCCCcEEEEEcCCCceeeeCCCCCC
Q 041325 275 ------DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSG-ACDRSILVWERDQGNYIVDGDDDSG 347 (450)
Q Consensus 275 ------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~~~ 347 (450)
++.|..||..+++. ..+.........++++|+++.|+.+ ..++.|.+|++..... .
T Consensus 158 ~~~~~~~g~v~~~d~~~~~~---------~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~--------~ 220 (322)
T 2fp8_A 158 MDTSDKTGRLIKYDPSTKET---------TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKK--------G 220 (322)
T ss_dssp HHHTCCCEEEEEEETTTTEE---------EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTT--------T
T ss_pred hcccCCCceEEEEeCCCCEE---------EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcC--------C
Confidence 36688888654431 1111112345679999999866655 5568999999875320 0
Q ss_pred ceeeeccccCCccceEEEEEeC--CeEEEEeC----------CCeEEEeeCCCCccccCCCceeEEEecCC----CcceE
Q 041325 348 HMVLKGALRGHTKAILCLAVVS--NLLFSGSS----------DNTIRIWRRSSSVTDHQKGYSCLAVLEGH----RRPVK 411 (450)
Q Consensus 348 ~~~~~~~~~~~~~~v~~~~~~~--~~l~s~~~----------dg~v~iwd~~~~~~~~~~~~~~~~~~~~h----~~~v~ 411 (450)
......... + ...+++++ ++.++... .+.|..+|... +.+..+... ...++
T Consensus 221 ~~~~~~~~~---g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G---------~~~~~~~~~~g~~~~~~~ 287 (322)
T 2fp8_A 221 TAEVLVKIP---N-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFG---------NILEVIPLPPPFAGEHFE 287 (322)
T ss_dssp CEEEEEECS---S-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTS---------CEEEEEECCTTTTTSCCC
T ss_pred ccceEEeCC---C-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCC---------CEEEEEECCCCCccccce
Confidence 111111111 2 45677764 44444333 45677777642 334444322 23466
Q ss_pred EEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 412 CLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 412 ~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
.+++ .++. ++++....+.|..+++
T Consensus 288 ~~~~-~~g~-------------L~v~~~~~~~i~~~~~ 311 (322)
T 2fp8_A 288 QIQE-HDGL-------------LYIGTLFHGSVGILVY 311 (322)
T ss_dssp EEEE-ETTE-------------EEEECSSCSEEEEEEC
T ss_pred EEEE-eCCE-------------EEEeecCCCceEEEec
Confidence 6665 4555 6777777888888876
No 260
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.47 E-value=4.8e-05 Score=72.12 Aligned_cols=212 Identities=11% Similarity=0.084 Sum_probs=117.6
Q ss_pred eCCEEEEeeC-CCcEEEecC-CCCCceeeeecCCCCcceeEEecCCCceEEEEE--eCCe----EEEEeCCCeEEEEEcC
Q 041325 84 AGKLLYGGSS-NGEIRAWNR-DPNNYVNITSTDVGDHANVVATGNGDAVKSLVV--LGDK----LFSAHQDHKIRVWKID 155 (450)
Q Consensus 84 d~~~l~tgs~-dg~v~vw~~-~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~----l~s~~~dg~i~iw~~~ 155 (450)
.+..++.++. ++.|..+|. .+++.+............... ........+++ ..+. ++.++.|+.|..+|..
T Consensus 61 ~~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~-~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~ 139 (599)
T 1w6s_A 61 VDGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVA-CCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAE 139 (599)
T ss_dssp ETTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGC-SSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETT
T ss_pred ECCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccc-cccccccceEEEecCCcceeEEEEEcCCCEEEEEECC
Confidence 4666777776 899999999 899987764432211000000 00001122445 4455 8889999999999999
Q ss_pred CCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe------
Q 041325 156 NNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS------ 229 (450)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------ 229 (450)
+++............ .......++ + .++ .+++++
T Consensus 140 TG~~~W~~~~~~~~~----------------------------------~~~~~ssP~--v---~~g-~V~vg~~g~e~g 179 (599)
T 1w6s_A 140 TGETVWKVENSDIKV----------------------------------GSTLTIAPY--V---VKD-KVIIGSSGAELG 179 (599)
T ss_dssp TCCEEEEEECCCGGG----------------------------------TCBCCSCCE--E---ETT-EEEECCBCGGGT
T ss_pred CCCEEEeecCCCCCc----------------------------------cceeecCCE--E---ECC-EEEEEecccccC
Confidence 986533221110000 000001111 1 133 445544
Q ss_pred CCCcEEEEecCCCeEEEEeecccccc------------------------------------e-EEEEEeecCCcEEEEE
Q 041325 230 WDRTFKIWRTSDFRCLESVKNAHDDA------------------------------------I-NAIVVSKSNDGFVYTG 272 (450)
Q Consensus 230 ~dg~i~iwd~~~~~~~~~~~~~~~~~------------------------------------v-~~~~~~~~~~~~l~~~ 272 (450)
.+|.|+.+|.++++.+-.+....... + ..+++.+ ..++++.+
T Consensus 180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g 258 (599)
T 1w6s_A 180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFG 258 (599)
T ss_dssp CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEE
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEe
Confidence 37999999999999887776321110 0 1234544 34466666
Q ss_pred cCC----------------CcEEEEeCcchhhhccccchhhhh------HhhcccceEEEEEc-CCC---CEEEEeeCCC
Q 041325 273 SAD----------------TKIKVWKKLRAALQVNKKHSLVQT------LEKHKSAVTALALS-TDG---TVLYSGACDR 326 (450)
Q Consensus 273 ~~d----------------g~i~vwd~~~~~~~~~~~~~~~~~------~~~~~~~i~~l~~~-~~~---~~l~~g~~dg 326 (450)
..+ +.|..+|.++++.. +..... +.....++. +... .+| ..++.++.+|
T Consensus 259 ~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~----W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G 333 (599)
T 1w6s_A 259 TGNPAPWNETMRPGDNKWTMTIFGRDADTGEAK----FGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNG 333 (599)
T ss_dssp CCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEE----EEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTS
T ss_pred CCCCccccCcccCCCccccceEEEEeCCCCcee----eEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCc
Confidence 654 37888998887621 111000 001112221 2222 467 5677889999
Q ss_pred cEEEEEcCCCceeeeC
Q 041325 327 SILVWERDQGNYIVDG 342 (450)
Q Consensus 327 ~i~vwd~~~~~~~~~~ 342 (450)
.++++|.++++.+...
T Consensus 334 ~l~~lD~~tG~~lw~~ 349 (599)
T 1w6s_A 334 IVYTLDRTDGALVSAN 349 (599)
T ss_dssp EEEEEETTTCCEEEEE
T ss_pred EEEEEECCCCCEeecc
Confidence 9999999999987654
No 261
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.41 E-value=0.00086 Score=59.26 Aligned_cols=235 Identities=11% Similarity=0.053 Sum_probs=134.3
Q ss_pred cceEEEEEe-CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC--eEE-EEeCCCeEEE
Q 041325 76 SYIPSLAIA-GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD--KLF-SAHQDHKIRV 151 (450)
Q Consensus 76 ~~v~~~~~d-~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~l~-s~~~dg~i~i 151 (450)
+..+|.+.+ ..+|+.+.. ..|+..+++....... . .....+..++|.+. .|+ +-...+.|..
T Consensus 34 d~~~C~~~~~~~~ll~~~~-~~I~~i~~~g~~~~~~------------~-~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r 99 (349)
T 3v64_C 34 DRRSCKALGPEPVLLFANR-IDIRQVLPHRSEYTLL------------L-NNLENAIALDFHHRRELVFWSDVTLDRILR 99 (349)
T ss_dssp TSSCEEESSSCCEEEEECB-SCEEEECTTSCCEEEE------------E-CSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCCcccccccCceeEeecc-cceEEEeCCCCeeEEe------------e-cCCCceEEEEEeccccEEEEEeccCCceEE
Confidence 334555552 344444433 5688888776554332 1 22345788999843 344 4445678888
Q ss_pred EEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC-CCEEEEEeC
Q 041325 152 WKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD-GSLLYSTSW 230 (450)
Q Consensus 152 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~ 230 (450)
++++....... ..........+++.+. +.+.++-..
T Consensus 100 ~~~~g~~~~~~-------------------------------------------~~~~~~~p~glavd~~~g~ly~~d~~ 136 (349)
T 3v64_C 100 ANLNGSNVEEV-------------------------------------------VSTGLESPGGLAVDWVHDKLYWTDSG 136 (349)
T ss_dssp EETTSCSCEEE-------------------------------------------ECSSCSCCCEEEEETTTTEEEEEETT
T ss_pred EecCCCCceEE-------------------------------------------EeCCCCCccEEEEecCCCeEEEEcCC
Confidence 88876521100 0011124567888874 455555556
Q ss_pred CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC-CcEEEEeCcchhhhccccchhhhhHhhcccceEE
Q 041325 231 DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD-TKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTA 309 (450)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 309 (450)
.+.|.+.++........+. ........+++.|....++++-... +.|..+++.... ........-.....
T Consensus 137 ~~~I~~~~~dG~~~~~l~~-~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~--------~~~~~~~~~~~PnG 207 (349)
T 3v64_C 137 TSRIEVANLDGAHRKVLLW-QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--------RRIIADTHLFWPNG 207 (349)
T ss_dssp TTEEEEEETTSCSCEEEEC-TTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--------CEESCCSSCSCEEE
T ss_pred CCeEEEEcCCCCceEEEEe-CCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCC--------cEEEEECCCCCcce
Confidence 7889999987543322232 3345678999998666566666555 788888875432 00111112345789
Q ss_pred EEEcCCCCEEEEee-CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-eEEEEeCCCeEEEeeCC
Q 041325 310 LALSTDGTVLYSGA-CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 310 l~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~ 387 (450)
|+++|++..|+.+. ..+.|..+|+...... .. ....-.....+++..+ ++++-...+.|..++..
T Consensus 208 la~d~~~~~lY~aD~~~~~I~~~~~dG~~~~----------~~---~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~ 274 (349)
T 3v64_C 208 LTIDYAGRRMYWVDAKHHVIERANLDGSHRK----------AV---ISQGLPHPFAITVFEDSLYWTDWHTKSINSANKF 274 (349)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCE----------EE---ECSSCSSEEEEEEETTEEEEEETTTTEEEEEETT
T ss_pred EEEeCCCCEEEEEECCCCEEEEEeCCCCceE----------EE---EeCCCCCceEEEEECCEEEEecCCCCeEEEEEcc
Confidence 99998776666554 4678999998743211 01 1111223456666655 45555567788888754
Q ss_pred CC
Q 041325 388 SS 389 (450)
Q Consensus 388 ~~ 389 (450)
++
T Consensus 275 ~G 276 (349)
T 3v64_C 275 TG 276 (349)
T ss_dssp TC
T ss_pred CC
Confidence 43
No 262
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.39 E-value=0.00058 Score=61.31 Aligned_cols=232 Identities=12% Similarity=0.061 Sum_probs=132.7
Q ss_pred EEEEEe-CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC--eEE-EEeCCCeEEEEEc
Q 041325 79 PSLAIA-GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD--KLF-SAHQDHKIRVWKI 154 (450)
Q Consensus 79 ~~~~~d-~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~l~-s~~~dg~i~iw~~ 154 (450)
+|.+.+ ..+|+.+.. ..|+..++........ ......+..++|.+. .|+ +-...+.|..+++
T Consensus 80 ~C~~~~~~~~l~~~~~-~~I~~i~~~~~~~~~~-------------~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~ 145 (386)
T 3v65_B 80 SCKALGPEPVLLFANR-IDIRQVLPHRSEYTLL-------------LNNLENAIALDFHHRRELVFWSDVTLDRILRANL 145 (386)
T ss_dssp CEEECSSCCEEEEECB-SCEEEECTTSCCCEEE-------------ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred eECCccccceeEeecC-ccceeeccCCCcEEEE-------------ecCCCccEEEEEecCCCeEEEEeCCCCcEEEEec
Confidence 344442 344444433 6788888876654333 122346788999853 344 4445678888888
Q ss_pred CCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC-CCEEEEEeCCCc
Q 041325 155 DNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD-GSLLYSTSWDRT 233 (450)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~ 233 (450)
+........ .........+++++. +.++++-...+.
T Consensus 146 ~g~~~~~~~-------------------------------------------~~~~~~p~glavd~~~g~lY~~d~~~~~ 182 (386)
T 3v65_B 146 NGSNVEEVV-------------------------------------------STGLESPGGLAVDWVHDKLYWTDSGTSR 182 (386)
T ss_dssp TSCCEEEEE-------------------------------------------CSSCSCCCCEEEETTTTEEEEEETTTTE
T ss_pred CCCCcEEEE-------------------------------------------eCCCCCccEEEEEeCCCeEEEEcCCCCe
Confidence 765211100 001123466888874 444555556778
Q ss_pred EEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC-CcEEEEeCcchhhhccccchhhhhHhhcccceEEEEE
Q 041325 234 FKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD-TKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALAL 312 (450)
Q Consensus 234 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 312 (450)
|.+.++........+. ........+++.|....++++-... +.|..+++.... ........-.....|++
T Consensus 183 I~~~~~dg~~~~~l~~-~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~--------~~~~~~~~~~~PnGlav 253 (386)
T 3v65_B 183 IEVANLDGAHRKVLLW-QSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSG--------RRIIADTHLFWPNGLTI 253 (386)
T ss_dssp EEECBTTSCSCEEEEC-SSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS--------CEEEECSSCSCEEEEEE
T ss_pred EEEEeCCCCceEEeec-CCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCC--------cEEEEECCCCCeeeEEE
Confidence 9988887543333332 3345678999998666555665555 778888865432 01111112345689999
Q ss_pred cCCCCEEEEee-CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-eEEEEeCCCeEEEeeCCCC
Q 041325 313 STDGTVLYSGA-CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 313 ~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~ 389 (450)
+|++..|+.+. ..+.|..+|+...... .. ..........+++.++ ++++-...+.|..++..++
T Consensus 254 d~~~~~lY~aD~~~~~I~~~d~dG~~~~----------~~---~~~~~~~P~giav~~~~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 254 DYAGRRMYWVDAKHHVIERANLDGSHRK----------AV---ISQGLPHPFAITVFEDSLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp EGGGTEEEEEETTTTEEEEECTTSCSCE----------EE---ECSSCSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred eCCCCEEEEEECCCCEEEEEeCCCCeeE----------EE---EECCCCCceEEEEECCEEEEeeCCCCeEEEEECCCC
Confidence 98766666554 4677999987643211 01 1111223456666655 5556666788888885543
No 263
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.38 E-value=0.0032 Score=64.50 Aligned_cols=177 Identities=12% Similarity=0.148 Sum_probs=108.5
Q ss_pred cEEEEecCCCeEEEEeecccccceEEEEEeec---CCcEEEEEc----------CCCcEEEEeCcchhhhccccchhhhh
Q 041325 233 TFKIWRTSDFRCLESVKNAHDDAINAIVVSKS---NDGFVYTGS----------ADTKIKVWKKLRAALQVNKKHSLVQT 299 (450)
Q Consensus 233 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~ 299 (450)
.|++.|..+.+.+..+.......+.+++...- ...++++|+ ..|.|.+|++..++ .+.+..
T Consensus 808 ~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~k------L~lv~~ 881 (1158)
T 3ei3_A 808 NLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGK------LQTVAE 881 (1158)
T ss_dssp EEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTE------EEEEEE
T ss_pred EEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCE------EEEEEE
Confidence 46778877777777666556666777765432 234777776 35889999986322 222322
Q ss_pred HhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCC
Q 041325 300 LEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDN 379 (450)
Q Consensus 300 ~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg 379 (450)
. ..++.+++++-- +| +|++|- ..+|++|++...+.+. .......+ -.+..+...+++++.|..-.
T Consensus 882 ~-~v~g~v~al~~~-~g-~Lla~i-g~~l~vy~l~~~~~L~----------~~~~~~~~-i~~~~l~~~~~~I~vgD~~~ 946 (1158)
T 3ei3_A 882 K-EVKGAVYSMVEF-NG-KLLASI-NSTVRLYEWTTEKELR----------TECNHYNN-IMALYLKTKGDFILVGDLMR 946 (1158)
T ss_dssp E-EESSCEEEEEEE-TT-EEEEEE-TTEEEEEEECTTSCEE----------EEEEECCC-SCEEEEEEETTEEEEEESSB
T ss_pred E-EcCCcCEEEeee-CC-EEEEEc-CCEEEEEECCCCceEE----------EEeecccc-EEEEEEeccCCEEEEEEhhh
Confidence 2 246778888744 45 444443 5789999998654331 00111111 11346666789999999888
Q ss_pred eEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEe
Q 041325 380 TIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQI 449 (450)
Q Consensus 380 ~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l 449 (450)
.|.++.++.. ......+. -..+...++++.+-.++ .++.+..+|.|.+...
T Consensus 947 Sv~~~~y~~~----~~~L~~~a-~D~~~~~vta~~~ld~~--------------t~l~aD~~gNl~vl~~ 997 (1158)
T 3ei3_A 947 SVLLLAYKPM----EGNFEEIA-RDFNPNWMSAVEILDDD--------------NFLGAENAFNLFVCQK 997 (1158)
T ss_dssp CEEEEEEETT----TTEEEEEE-ECCSCBCEEEEEEEETT--------------EEEEEETTSEEEEEEE
T ss_pred eEEEEEEEcC----CCeEEEEE-eecccccEEEEEEEccC--------------cEEEEcCCCcEEEEec
Confidence 8887765532 11112222 23356678899887664 5777889999888753
No 264
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.38 E-value=0.00089 Score=58.00 Aligned_cols=210 Identities=12% Similarity=0.108 Sum_probs=119.6
Q ss_pred CCccceeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe
Q 041325 59 AASEHQCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL 136 (450)
Q Consensus 59 ~~~~~~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~ 136 (450)
.....+.+..+. . ......+++ +++++++-..++.|..||.+... ... ..-...+..+++.
T Consensus 18 ~~~~~~~~~~~p--~-~~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~~-------------~~~~~~p~gia~~ 80 (306)
T 2p4o_A 18 ELAPAKIITSFP--V-NTFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QIH-------------ATVEGKVSGLAFT 80 (306)
T ss_dssp CCCCEEEEEEEC--T-TCCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EEE-------------EECSSEEEEEEEC
T ss_pred cCCCceEeEeCC--C-CCCcceEEECCCCCEEEEeCCCCeEEEECCCCce-EEE-------------EeCCCCceeEEEc
Confidence 344556666664 2 256778888 57877777788999999977542 221 1122467889998
Q ss_pred CCe-EEEEeC--CC-eEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCc
Q 041325 137 GDK-LFSAHQ--DH-KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDT 212 (450)
Q Consensus 137 ~~~-l~s~~~--dg-~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (450)
+++ ++.+.. ++ .|..++..+++... +...+ ....
T Consensus 81 ~dG~l~vad~~~~~~~v~~~d~~~g~~~~--------------~~~~~----------------------------~~~~ 118 (306)
T 2p4o_A 81 SNGDLVATGWNADSIPVVSLVKSDGTVET--------------LLTLP----------------------------DAIF 118 (306)
T ss_dssp TTSCEEEEEECTTSCEEEEEECTTSCEEE--------------EEECT----------------------------TCSC
T ss_pred CCCcEEEEeccCCcceEEEEcCCCCeEEE--------------EEeCC----------------------------Cccc
Confidence 766 555542 22 35556655553211 11110 0111
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEecCCCeE-EEEee--------cccccceEEEEEeecCCcEEEEEcCCCcEEEEeC
Q 041325 213 VSALALSSDGSLLYSTSWDRTFKIWRTSDFRC-LESVK--------NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKK 283 (450)
Q Consensus 213 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~--------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 283 (450)
...++..+++..+++-..++.|..+|...++. +.... .......+.+ +++++.++++-...+.|..|++
T Consensus 119 ~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~ 196 (306)
T 2p4o_A 119 LNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPV 196 (306)
T ss_dssp EEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEB
T ss_pred cCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEe
Confidence 23344444444444444578888888876532 21110 0111234555 6656656777778889999998
Q ss_pred cc-hhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCc
Q 041325 284 LR-AALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGN 337 (450)
Q Consensus 284 ~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~ 337 (450)
.. +... . ...+. .......++++++|++.++....+.|.++|.. ++
T Consensus 197 ~~~g~~~---~---~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~ 243 (306)
T 2p4o_A 197 DSTDKPG---E---PEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RS 243 (306)
T ss_dssp CTTSCBC---C---CEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CC
T ss_pred CCCCCCC---c---cEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CC
Confidence 64 2210 0 01110 11345778999999887777778899999875 44
No 265
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.28 E-value=7.2e-05 Score=69.37 Aligned_cols=227 Identities=11% Similarity=0.082 Sum_probs=125.3
Q ss_pred EEEEE-----eCCEEEEeeC-CCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe--CCe--EEEEe----
Q 041325 79 PSLAI-----AGKLLYGGSS-NGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL--GDK--LFSAH---- 144 (450)
Q Consensus 79 ~~~~~-----d~~~l~tgs~-dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~--~~~--l~s~~---- 144 (450)
-.+++ ||++|+.... ++.|.+-|+++.+...+... ........+++. |+. +++++
T Consensus 90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~i-----------p~g~~phg~~~~~~p~~~~v~~~~~~~~ 158 (595)
T 1fwx_A 90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEI-----------PNAKGIHGLRPQKWPRSNYVFCNGEDET 158 (595)
T ss_dssp EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEEC-----------SSCCSEEEEEECCSSBCSEEEEEECSCE
T ss_pred cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeC-----------CCCCCCcceeeeecCCCcEEEEeccccc
Confidence 56666 7888887665 45799999999987775321 222356677762 444 55553
Q ss_pred --------------CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCC
Q 041325 145 --------------QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHV 210 (450)
Q Consensus 145 --------------~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (450)
.++.+.+.|.++.+.......+... ..+..-+ ++++......+.. ....+..-.
T Consensus 159 p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~p----d~~~~sp--dGk~~~vt~~~se------~~~~i~~~~ 226 (595)
T 1fwx_A 159 PLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGNL----DNCDADY--EGKWAFSTSYNSE------KGMTLPEMT 226 (595)
T ss_dssp ESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSCC----CCEEECS--SSSEEEEEESCTT------CCSSHHHHT
T ss_pred ccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCCc----cceEECC--CCCEEEEEecCcc------cCcchhhcc
Confidence 3467889998887443322221100 1111111 1111111111000 000000000
Q ss_pred ----CceEEE------EEccCCCEEEEEeCCCcEEEEecCC--CeE-EEEeecccccceEEEEEeecCCcEEEEEcCCCc
Q 041325 211 ----DTVSAL------ALSSDGSLLYSTSWDRTFKIWRTSD--FRC-LESVKNAHDDAINAIVVSKSNDGFVYTGSADTK 277 (450)
Q Consensus 211 ----~~v~~~------~~~~~~~~l~~~~~dg~i~iwd~~~--~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~ 277 (450)
+.|.-+ .+.++|+.... +.|.+.|..+ ++. +..+. -.....++.++|++...++++..+..
T Consensus 227 ~~~~d~v~V~~~~~~~~~v~~Gk~~~i----~~V~VID~~~~~~~~~~~~Ip--vg~~PhGv~~sPDGk~v~V~~~~s~~ 300 (595)
T 1fwx_A 227 AAEMDHIVVFNIAEIEKAIAAGDYQEL----NGVKVVDGRKEASSLFTRYIP--IANNPHGCNMAPDKKHLCVAGKLSPT 300 (595)
T ss_dssp CCSEEEEEEEEHHHHHHHHHHTCSEEE----TTEEEEECSGGGCCSSEEEEE--EESSCCCEEECTTSSEEEEECTTSSB
T ss_pred ccccceEEEeeccceeEeccCCCeeEE----CcEEEEeCcccCCceeEEEEe--cCCCceEEEEcCCCCEEEEeCCCCCe
Confidence 001101 12334544333 4599999987 544 45554 34567889999988877888888999
Q ss_pred EEEEeCcchhhhccc----cchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCC
Q 041325 278 IKVWKKLRAALQVNK----KHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQ 335 (450)
Q Consensus 278 i~vwd~~~~~~~~~~----~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~ 335 (450)
|.++|+.+.+..... ........ .-......++|+|+|...++...|+.|.+||+.+
T Consensus 301 VsVid~~~~~~~~~~~l~~~~~v~~~v-~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 301 VTVLDVTRFDAVFYENADPRSAVVAEP-ELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EEEEEGGGHHHHHHSCCCGGGGEEECC-BCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred EEEEECcccccccccccCcccceEEEc-CCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 999999765311000 00011111 1234578899999995455666799999999986
No 266
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.27 E-value=0.0011 Score=55.15 Aligned_cols=196 Identities=12% Similarity=0.083 Sum_probs=119.3
Q ss_pred cCCCceEEEEEccCCCE-EEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcch
Q 041325 208 HHVDTVSALALSSDGSL-LYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 286 (450)
+-.+.+..++++|+++. +++...++.|...|.. ++.+..+..........|++.+ ++.++++.-.++.+.++++...
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~ 101 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISLTPN 101 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEECTT
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEcCCC
Confidence 44457999999997664 4557788999999998 8888887533346778888885 3335566667788888887543
Q ss_pred hh-hccccch-hhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeec----cccCCcc
Q 041325 287 AL-QVNKKHS-LVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKG----ALRGHTK 360 (450)
Q Consensus 287 ~~-~~~~~~~-~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 360 (450)
.. ....... ... ....+.....++|+|+++.|+++.+.....+|.+. +.. . ........ .-..+..
T Consensus 102 ~~i~~~~~~~~~~~-~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~-g~~----~--~~~l~i~~~~~~~~~~~~~ 173 (255)
T 3qqz_A 102 SEVKILKKIKIPLQ-ESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVN-GLL----S--SNELHISKDKALQRQFTLD 173 (255)
T ss_dssp CCEEEEEEEECCCS-SCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEE-STT----C--SSCCEEEECHHHHHTCCSS
T ss_pred Ceeeeeeeeccccc-cccccCCcceEEEeCCCCEEEEEECcCCceEEEEc-ccc----c--CCceeeecchhhccccccC
Confidence 31 0000000 000 11235567999999999888887776655666654 100 0 00001100 0011234
Q ss_pred ceEEEEEeCC---eEEEEeCCCeEEEeeCCCCccccCCCceeEEEec-CC------CcceEEEEEEecCC
Q 041325 361 AILCLAVVSN---LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLE-GH------RRPVKCLTAVVDSD 420 (450)
Q Consensus 361 ~v~~~~~~~~---~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-~h------~~~v~~l~~~~~~~ 420 (450)
.+.++++++. +++....++.+.++|.... ......+. +. ...-..|+|.+++.
T Consensus 174 d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-------~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~ 236 (255)
T 3qqz_A 174 DVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-------VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN 236 (255)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEECTTCC-------EEEEEECSTTGGGCSSCCCSEEEEEECTTCC
T ss_pred CceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-------EEEEEEcCCccCCcccccCCCCeeEECCCCC
Confidence 5688889854 7777777888999997742 12222332 21 12568999999988
No 267
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.27 E-value=0.0018 Score=58.08 Aligned_cols=194 Identities=14% Similarity=0.037 Sum_probs=114.0
Q ss_pred CceEEEEEccCCC-EEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhh
Q 041325 211 DTVSALALSSDGS-LLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQ 289 (450)
Q Consensus 211 ~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 289 (450)
..+..++|++.+. ++++-...+.|..+++........+. ........+++.+..+.++++-...+.|.+.++....
T Consensus 116 ~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~-~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~-- 192 (386)
T 3v65_B 116 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS-TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH-- 192 (386)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC-SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCS--
T ss_pred CccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe-CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCc--
Confidence 3578899997544 45555567889999988665433333 2334567788887666677777778889888875432
Q ss_pred ccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC-C-CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEE
Q 041325 290 VNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC-D-RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV 367 (450)
Q Consensus 290 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~-d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 367 (450)
....+.........++++|.+..|+.... . +.|..+++...... ......-.....|++
T Consensus 193 ------~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-------------~~~~~~~~~PnGlav 253 (386)
T 3v65_B 193 ------RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-------------IIADTHLFWPNGLTI 253 (386)
T ss_dssp ------CEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-------------EEECSSCSCEEEEEE
T ss_pred ------eEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcE-------------EEEECCCCCeeeEEE
Confidence 01111122345789999987666665543 3 67888887643211 011111234577888
Q ss_pred e--CC-eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcE
Q 041325 368 V--SN-LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEI 444 (450)
Q Consensus 368 ~--~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i 444 (450)
+ +. +.++-+..+.|..+|+... .....+.........|++ ..+. ++++-...+.|
T Consensus 254 d~~~~~lY~aD~~~~~I~~~d~dG~--------~~~~~~~~~~~~P~giav-~~~~-------------ly~td~~~~~V 311 (386)
T 3v65_B 254 DYAGRRMYWVDAKHHVIERANLDGS--------HRKAVISQGLPHPFAITV-FEDS-------------LYWTDWHTKSI 311 (386)
T ss_dssp EGGGTEEEEEETTTTEEEEECTTSC--------SCEEEECSSCSSEEEEEE-ETTE-------------EEEEETTTTEE
T ss_pred eCCCCEEEEEECCCCEEEEEeCCCC--------eeEEEEECCCCCceEEEE-ECCE-------------EEEeeCCCCeE
Confidence 7 33 4455556778999987642 111112222334566776 3333 55555556666
Q ss_pred EEEE
Q 041325 445 KIWQ 448 (450)
Q Consensus 445 ~iw~ 448 (450)
..++
T Consensus 312 ~~~~ 315 (386)
T 3v65_B 312 NSAN 315 (386)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6554
No 268
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.22 E-value=0.0022 Score=55.78 Aligned_cols=230 Identities=16% Similarity=0.114 Sum_probs=128.7
Q ss_pred EEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC--eEE-EEeCCCeEEEEEcCCCceeEEe
Q 041325 87 LLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD--KLF-SAHQDHKIRVWKIDNNTSAYYS 163 (450)
Q Consensus 87 ~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~l~-s~~~dg~i~iw~~~~~~~~~~~ 163 (450)
+|+.+.. ..|+..|+++.+.... ......+.+++|.+. .|+ +-..++.|..++++.....
T Consensus 3 ~ll~~~~-~~I~~i~~~~~~~~~~-------------~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~--- 65 (316)
T 1ijq_A 3 YLFFTNR-HEVRKMTLDRSEYTSL-------------IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV--- 65 (316)
T ss_dssp EEEEECB-SSEEEEETTSCCCEEE-------------ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC---------
T ss_pred EEEEECC-CeEEEEECCCcceEeh-------------hcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCC---
Confidence 3444443 5688889887765443 122346788999853 344 4445688888887752000
Q ss_pred ccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccC-CCEEEEEeCCCcEEEEecCCC
Q 041325 164 TSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSD-GSLLYSTSWDRTFKIWRTSDF 242 (450)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~ 242 (450)
. .... .+.........+++++. +++.++-...+.|.+.|+...
T Consensus 66 ---~------~~~~---------------------------~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 66 ---S------SYDT---------------------------VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp -----------CEE---------------------------EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred ---c------ccEE---------------------------EEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 0 0000 00011124578888874 445555566789999998754
Q ss_pred eEEEEeecccccceEEEEEeecCCcEEEEEcCC-CcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEE
Q 041325 243 RCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD-TKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYS 321 (450)
Q Consensus 243 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~ 321 (450)
.....+. ........+++.|....++++.... +.|...++..... ..+ ....-.....+++++++..|+.
T Consensus 110 ~~~~~~~-~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~------~~~--~~~~~~~P~gla~d~~~~~lY~ 180 (316)
T 1ijq_A 110 KRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI------YSL--VTENIQWPNGITLDLLSGRLYW 180 (316)
T ss_dssp SEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCE------EEE--ECSSCSCEEEEEEETTTTEEEE
T ss_pred ceEEEEE-CCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCe------EEE--EECCCCCceEEEEeccCCEEEE
Confidence 3333332 3345678999998555455555443 6788887643220 001 0112345789999987776666
Q ss_pred ee-CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-eEEEEeCCCeEEEeeCCCC
Q 041325 322 GA-CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 322 g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~ 389 (450)
+. ..+.|..+|+...... ... .....-.....+++.++ ++++-...+.|..++..++
T Consensus 181 ~D~~~~~I~~~d~dg~~~~----------~~~-~~~~~~~~P~giav~~~~ly~~d~~~~~V~~~~~~~g 239 (316)
T 1ijq_A 181 VDSKLHSISSIDVNGGNRK----------TIL-EDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG 239 (316)
T ss_dssp EETTTTEEEEEETTSCSCE----------EEE-ECTTTTSSEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred EECCCCeEEEEecCCCceE----------EEe-ecCCccCCcEEEEEECCEEEEEECCCCeEEEEeCCCC
Confidence 55 4578999998743211 011 11111123456666655 5555556788988887654
No 269
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.21 E-value=0.0014 Score=59.71 Aligned_cols=153 Identities=10% Similarity=0.075 Sum_probs=91.2
Q ss_pred ceEEEEEeCC--e-EEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceee
Q 041325 129 AVKSLVVLGD--K-LFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCT 205 (450)
Q Consensus 129 ~v~~l~~~~~--~-l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (450)
....|+++|+ . |+.+...+.|+.+|++.......
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~------------------------------------------- 174 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTV------------------------------------------- 174 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEE-------------------------------------------
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEE-------------------------------------------
Confidence 4577888862 3 66666557788888876532110
Q ss_pred eecCCCceEEEEEccCCCEEEEEeC-CC----cEEEEecCCCeEE--EEeecccccceEEEEEeecCCcEEEEEcCCCcE
Q 041325 206 WVHHVDTVSALALSSDGSLLYSTSW-DR----TFKIWRTSDFRCL--ESVKNAHDDAINAIVVSKSNDGFVYTGSADTKI 278 (450)
Q Consensus 206 ~~~~~~~v~~~~~~~~~~~l~~~~~-dg----~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i 278 (450)
.........+++++++++|+.+.. ++ .+...+. .+... ..+. .......++++|....++++-..++.|
T Consensus 175 -~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~--~~~~p~giavdp~~g~lyv~d~~~~~V 250 (430)
T 3tc9_A 175 -YSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTR-ESGFKVITELT--KGQNCNGAETHPINGELYFNSWNAGQV 250 (430)
T ss_dssp -ECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEE--ECSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred -ecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeC-CCceeeeeeec--cCCCceEEEEeCCCCEEEEEECCCCEE
Confidence 012235788999999996666554 22 2333343 22221 2222 234467788887555566666678899
Q ss_pred EEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEe-eCCCcEEEEEcCC
Q 041325 279 KVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSG-ACDRSILVWERDQ 335 (450)
Q Consensus 279 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g-~~dg~i~vwd~~~ 335 (450)
..++...+... .+... ........++|+|+|++|+.+ ...+.|..++...
T Consensus 251 ~~~~~~~~~~~------~~~~~-~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 251 FRYDFTTQETT------PLFTI-QDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp EEEETTTTEEE------EEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred EEEECCCCcEE------EEEEc-CCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 99998654310 01111 112356789999999955544 4678899988763
No 270
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.19 E-value=0.0029 Score=55.85 Aligned_cols=155 Identities=15% Similarity=0.026 Sum_probs=96.3
Q ss_pred ceEEEEEccCCCEE-EEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc
Q 041325 212 TVSALALSSDGSLL-YSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290 (450)
Q Consensus 212 ~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 290 (450)
.+..++|++....| ++-...+.|..+++........+. ........+++.+..+.++++-...+.|.+.++....
T Consensus 74 ~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~-~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~--- 149 (349)
T 3v64_C 74 NAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS-TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAH--- 149 (349)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS---
T ss_pred ceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEe-CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCc---
Confidence 57889999755544 454567889999988655333333 2334567888887666677777778899999875432
Q ss_pred cccchhhhhHhhcccceEEEEEcCCCCEEEEee-CC-CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA-CD-RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV 368 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~-~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 368 (450)
..............++++|.+..|+... .+ +.|..+++...... ......-.....++++
T Consensus 150 -----~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~-------------~~~~~~~~~PnGla~d 211 (349)
T 3v64_C 150 -----RKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRR-------------IIADTHLFWPNGLTID 211 (349)
T ss_dssp -----CEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE-------------ESCCSSCSCEEEEEEE
T ss_pred -----eEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcE-------------EEEECCCCCcceEEEe
Confidence 0111112234568999999666555544 34 77888887643211 0111122345788887
Q ss_pred C--C-eEEEEeCCCeEEEeeCCC
Q 041325 369 S--N-LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 369 ~--~-~l~s~~~dg~v~iwd~~~ 388 (450)
+ . +.++-...+.|..+|+..
T Consensus 212 ~~~~~lY~aD~~~~~I~~~~~dG 234 (349)
T 3v64_C 212 YAGRRMYWVDAKHHVIERANLDG 234 (349)
T ss_dssp TTTTEEEEEETTTTEEEEEETTS
T ss_pred CCCCEEEEEECCCCEEEEEeCCC
Confidence 3 3 444555667899998874
No 271
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.18 E-value=0.00061 Score=65.99 Aligned_cols=103 Identities=14% Similarity=0.164 Sum_probs=65.9
Q ss_pred CCcEEEEecCCCeEEEEeeccc--c----------------------------cceEEEEEeecCCcEEEEEcCCCc---
Q 041325 231 DRTFKIWRTSDFRCLESVKNAH--D----------------------------DAINAIVVSKSNDGFVYTGSADTK--- 277 (450)
Q Consensus 231 dg~i~iwd~~~~~~~~~~~~~~--~----------------------------~~v~~~~~~~~~~~~l~~~~~dg~--- 277 (450)
+|.|..+|..+++.+..+.... . .....+++.+. .++++.+..++.
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~-~~~vy~~~~~g~~w~ 255 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPE-LDLLYVGTGNGSPWN 255 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETT-TTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCC-CCEEEEeCCCCCccc
Confidence 5899999999999988775211 0 01123566663 447777777663
Q ss_pred ----------------EEEEeCcchhhhccccchhhhhHhhcc-------cceEEEEEcCCCC---EEEEeeCCCcEEEE
Q 041325 278 ----------------IKVWKKLRAALQVNKKHSLVQTLEKHK-------SAVTALALSTDGT---VLYSGACDRSILVW 331 (450)
Q Consensus 278 ----------------i~vwd~~~~~~~~~~~~~~~~~~~~~~-------~~i~~l~~~~~~~---~l~~g~~dg~i~vw 331 (450)
|..+|.++++.. +.... ..|. .+.....+..+|+ .++.++.+|.++++
T Consensus 256 ~~~~~~~~gd~l~~~~v~AlD~~tG~~~----W~~~~--~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~l 329 (668)
T 1kv9_A 256 REVRSPGGGDNLYLSSILAIRPDTGKLA----WHYQV--TPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVL 329 (668)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEE----EEEES--STTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEE
T ss_pred cCCCCCCCCCceeeeeEEEEcCCCCcee----eEeec--CCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEE
Confidence 899999887721 11110 0111 2222223334665 68999999999999
Q ss_pred EcCCCceee
Q 041325 332 ERDQGNYIV 340 (450)
Q Consensus 332 d~~~~~~~~ 340 (450)
|..+|+.+.
T Consensus 330 D~~tG~~l~ 338 (668)
T 1kv9_A 330 DRTNGKLIS 338 (668)
T ss_dssp ETTTCCEEE
T ss_pred ECCCCCEec
Confidence 999999873
No 272
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.15 E-value=0.0041 Score=56.02 Aligned_cols=231 Identities=15% Similarity=0.113 Sum_probs=133.0
Q ss_pred CEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC--eEEEE-eCCCeEEEEEcCCCceeEE
Q 041325 86 KLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD--KLFSA-HQDHKIRVWKIDNNTSAYY 162 (450)
Q Consensus 86 ~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~--~l~s~-~~dg~i~iw~~~~~~~~~~ 162 (450)
.+|+.+.. ..|+..+++....... ......+..|+|.+. .|+-+ ...+.|+.++++.....
T Consensus 84 ~~ll~~~~-~~I~~i~l~~~~~~~~-------------~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~-- 147 (400)
T 3p5b_L 84 AYLFFTNR-HEVRKMTLDRSEYTSL-------------IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGV-- 147 (400)
T ss_dssp CEEEEEET-TEEEEECTTSCSCEEE-------------ECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC--------
T ss_pred ceeEEecc-ceeEEEccCCcceeEe-------------ccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCC--
Confidence 44554443 6788888877654433 233457889999853 34443 45677888887653100
Q ss_pred eccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc-CCCEEEEEeCCCcEEEEecCC
Q 041325 163 STSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS-DGSLLYSTSWDRTFKIWRTSD 241 (450)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~ 241 (450)
. ...............+++.+ .+++.++-...+.|.+.++..
T Consensus 148 -----------~--------------------------~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 148 -----------S--------------------------SYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp -----------C--------------------------CCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred -----------C--------------------------cceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 0 00000011223577899988 555555656678999999876
Q ss_pred CeEEEEeecccccceEEEEEeecCCcEEEEEcC-CCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEE
Q 041325 242 FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSA-DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLY 320 (450)
Q Consensus 242 ~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~ 320 (450)
......+. ........|++.|....++++-.. .+.|...++.... ........-.....|++++++..|+
T Consensus 191 ~~~~~l~~-~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~--------~~~~~~~~l~~P~glavd~~~~~lY 261 (400)
T 3p5b_L 191 VKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD--------IYSLVTENIQWPNGITLDLLSGRLY 261 (400)
T ss_dssp CSEEEEEE-CSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS--------CEEEECSSCSCEEEEEEETTTTEEE
T ss_pred CceEEEEe-CCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc--------cEEEEECCCCceEEEEEEeCCCEEE
Confidence 54444443 344567899999855545555433 4778888875432 1111111235678999998777776
Q ss_pred Eee-CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC-eEEEEeCCCeEEEeeCCCC
Q 041325 321 SGA-CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN-LLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 321 ~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~ 389 (450)
.+. ..+.|..+|+...... .. ......-....+++..++ ++++-...+.|..+|..++
T Consensus 262 ~aD~~~~~I~~~d~dG~~~~----------~~-~~~~~~l~~P~gl~v~~~~lywtd~~~~~V~~~~~~~G 321 (400)
T 3p5b_L 262 WVDSKLHSISSIDVNGGNRK----------TI-LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTG 321 (400)
T ss_dssp EEETTTTEEEEEETTSCCCE----------EE-EECSSTTSSEEEEEEETTEEEEEESSSCSEEEEESSSC
T ss_pred EEECCCCEEEEEeCCCCccE----------EE-EeCCCCCCCCEEEEEeCCEEEEecCCCCeEEEEEcCCC
Confidence 665 4578999998743221 01 111111223456666665 5556666788988886654
No 273
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.13 E-value=0.0025 Score=52.87 Aligned_cols=211 Identities=12% Similarity=0.154 Sum_probs=126.5
Q ss_pred CCCcceEEEEEe--CC-EEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-E-EEEeCCC
Q 041325 73 GNSSYIPSLAIA--GK-LLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-L-FSAHQDH 147 (450)
Q Consensus 73 ~h~~~v~~~~~d--~~-~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l-~s~~~dg 147 (450)
|-...+..++++ ++ ++++...++.|...|.. ++....... .+ ....-.|++.+++ + ++.-.++
T Consensus 24 g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l----------~g-~~D~EGIa~~~~g~~~vs~E~~~ 91 (255)
T 3qqz_A 24 GITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPL----------DF-VKDLETIEYIGDNQFVISDERDY 91 (255)
T ss_dssp TCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEEC----------SS-CSSEEEEEECSTTEEEEEETTTT
T ss_pred CcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEec----------CC-CCChHHeEEeCCCEEEEEECCCC
Confidence 666789999994 44 55557778899999987 665554211 12 2467778887665 4 3434567
Q ss_pred eEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEE
Q 041325 148 KIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYS 227 (450)
Q Consensus 148 ~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~ 227 (450)
.+.++++......... ... .++. ...........++|+|.++.|++
T Consensus 92 ~l~~~~v~~~~~i~~~----------~~~-~~~~-----------------------~~~~~N~g~EGLA~d~~~~~L~v 137 (255)
T 3qqz_A 92 AIYVISLTPNSEVKIL----------KKI-KIPL-----------------------QESPTNCGFEGLAYSRQDHTFWF 137 (255)
T ss_dssp EEEEEEECTTCCEEEE----------EEE-ECCC-----------------------SSCCCSSCCEEEEEETTTTEEEE
T ss_pred cEEEEEcCCCCeeeee----------eee-cccc-----------------------ccccccCCcceEEEeCCCCEEEE
Confidence 8888888765310000 000 0000 00123456789999999887777
Q ss_pred EeCCCcEEEEecCC---CeEEEEee------cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhh
Q 041325 228 TSWDRTFKIWRTSD---FRCLESVK------NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQ 298 (450)
Q Consensus 228 ~~~dg~i~iwd~~~---~~~~~~~~------~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~ 298 (450)
+.......+|.+.. ...+..+. ......+.+++++|..+.+++....++.+..+|...... ....+..
T Consensus 138 a~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~~~---~~~~L~~ 214 (255)
T 3qqz_A 138 FKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGEVI---GEMSLTK 214 (255)
T ss_dssp EEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCCEE---EEEECST
T ss_pred EECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCCEE---EEEEcCC
Confidence 77665666665541 11122221 112346789999998877888888889999999654320 1111111
Q ss_pred hHhh---cccceEEEEEcCCCCEEEEeeCCCcEEEEEc
Q 041325 299 TLEK---HKSAVTALALSTDGTVLYSGACDRSILVWER 333 (450)
Q Consensus 299 ~~~~---~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~ 333 (450)
.+.+ .-.....|+|.++|++.+ .++.+.++++..
T Consensus 215 g~~~l~~~~~qpEGia~d~~G~lyI-vsE~n~~y~f~~ 251 (255)
T 3qqz_A 215 GSRGLSHNIKQAEGVAMDASGNIYI-VSEPNRFYRFTP 251 (255)
T ss_dssp TGGGCSSCCCSEEEEEECTTCCEEE-EETTTEEEEEEC
T ss_pred ccCCcccccCCCCeeEECCCCCEEE-EcCCceEEEEEe
Confidence 1111 123668899999998544 477776766654
No 274
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.11 E-value=0.0036 Score=54.13 Aligned_cols=226 Identities=16% Similarity=0.060 Sum_probs=119.4
Q ss_pred CceEEEEEeCCe-EEEEe-CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceee
Q 041325 128 DAVKSLVVLGDK-LFSAH-QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCT 205 (450)
Q Consensus 128 ~~v~~l~~~~~~-l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (450)
.....++|.++. |+.+. .++.|..||.+..... .
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~---------------~----------------------------- 67 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQI---------------H----------------------------- 67 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEE---------------E-----------------------------
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEE---------------E-----------------------------
Confidence 467788888765 55444 6788888887654110 0
Q ss_pred eecCCCceEEEEEccCCCEEEEEeCCC--cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeC
Q 041325 206 WVHHVDTVSALALSSDGSLLYSTSWDR--TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKK 283 (450)
Q Consensus 206 ~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 283 (450)
.........+++.++++++++..... .|..+|..+++...............++..+ +...+++-..++.|..+|.
T Consensus 68 -~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~ 145 (306)
T 2p4o_A 68 -ATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDV 145 (306)
T ss_dssp -EECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEET
T ss_pred -EeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeC
Confidence 01122578899999999766654332 4667777777654333212222334444432 3334555556888888887
Q ss_pred cchhhhccccchhhh--hHhhcccceEEEEEcCCCCEEEEe-eCCCcEEEEEcCC-CceeeeCCCCCCceeeeccccCCc
Q 041325 284 LRAALQVNKKHSLVQ--TLEKHKSAVTALALSTDGTVLYSG-ACDRSILVWERDQ-GNYIVDGDDDSGHMVLKGALRGHT 359 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~--~~~~~~~~i~~l~~~~~~~~l~~g-~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 359 (450)
..+............ .....-.....+ +++++.|+.+ ...+.|.+|++.. ++.. ........
T Consensus 146 ~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~--------~~~~~~~~---- 211 (306)
T 2p4o_A 146 VQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPG--------EPEIFVEQ---- 211 (306)
T ss_dssp TTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBC--------CCEEEEES----
T ss_pred CCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCC--------ccEEEecc----
Confidence 543100000000000 001111234455 7788766555 4567899999874 2210 00000111
Q ss_pred cceEEEEEe--CCeEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEE---ecCC
Q 041325 360 KAILCLAVV--SNLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAV---VDSD 420 (450)
Q Consensus 360 ~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~---~~~~ 420 (450)
.....++++ +++.++....+.|.+++.... ...+..+.......++++|. +++.
T Consensus 212 ~~P~gi~vd~dG~l~va~~~~~~V~~~~~~G~-------~~~~~~~~~~~~~p~~~a~~g~~~d~~ 270 (306)
T 2p4o_A 212 TNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS-------TTIIAQAEQGVIGSTAVAFGQTEGDCT 270 (306)
T ss_dssp CCCSSEEEBTTCCEEEECBTTCCEEEECTTCC-------EEEEECGGGTCTTEEEEEECCSTTTTT
T ss_pred CCCCCeEECCCCCEEEEeCCCCeEEEECCCCC-------EEEEeecccccCCceEEEEecccCCCC
Confidence 123345555 556666666788999986521 11122233333568899998 6765
No 275
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.11 E-value=0.0037 Score=54.28 Aligned_cols=197 Identities=11% Similarity=0.031 Sum_probs=110.6
Q ss_pred CceEEEEEccCCC-EEEEEeCCCcEEEEecCC---CeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcch
Q 041325 211 DTVSALALSSDGS-LLYSTSWDRTFKIWRTSD---FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 211 ~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 286 (450)
..+..++|++.+. ++++-..++.|..+++.. +.....+..........+++.+..+.++++-..++.|.++++...
T Consensus 30 ~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~ 109 (316)
T 1ijq_A 30 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 109 (316)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS
T ss_pred CceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC
Confidence 3578899998654 445555678999999875 122222221223456788888656666777778889999997543
Q ss_pred hhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC--CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEE
Q 041325 287 ALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD--RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILC 364 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 364 (450)
.. .............++++|.+..|+..... +.|..+++...... .. ....-.....
T Consensus 110 ~~--------~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~----------~~---~~~~~~~P~g 168 (316)
T 1ijq_A 110 KR--------KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY----------SL---VTENIQWPNG 168 (316)
T ss_dssp SE--------EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE----------EE---ECSSCSCEEE
T ss_pred ce--------EEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeE----------EE---EECCCCCceE
Confidence 20 00111122457899999966666555443 67888887532211 00 1112234578
Q ss_pred EEEeC--Ce-EEEEeCCCeEEEeeCCCCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccC
Q 041325 365 LAVVS--NL-LFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLD 441 (450)
Q Consensus 365 ~~~~~--~~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~D 441 (450)
+++++ +. .++-+..+.|..+|+... ..+.+............+++. .+. ++++-...
T Consensus 169 la~d~~~~~lY~~D~~~~~I~~~d~dg~------~~~~~~~~~~~~~~P~giav~-~~~-------------ly~~d~~~ 228 (316)
T 1ijq_A 169 ITLDLLSGRLYWVDSKLHSISSIDVNGG------NRKTILEDEKRLAHPFSLAVF-EDK-------------VFWTDIIN 228 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSC------SCEEEEECTTTTSSEEEEEEE-TTE-------------EEEEETTT
T ss_pred EEEeccCCEEEEEECCCCeEEEEecCCC------ceEEEeecCCccCCcEEEEEE-CCE-------------EEEEECCC
Confidence 88873 34 445556678999998742 112222221122334566663 333 55555556
Q ss_pred CcEEEEE
Q 041325 442 CEIKIWQ 448 (450)
Q Consensus 442 g~i~iw~ 448 (450)
+.|..++
T Consensus 229 ~~V~~~~ 235 (316)
T 1ijq_A 229 EAIFSAN 235 (316)
T ss_dssp TEEEEEE
T ss_pred CeEEEEe
Confidence 6666554
No 276
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=98.07 E-value=0.0046 Score=53.67 Aligned_cols=155 Identities=15% Similarity=0.052 Sum_probs=93.7
Q ss_pred ceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEc-CCCcEEEEeCcchhhh
Q 041325 212 TVSALALSS-DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGS-ADTKIKVWKKLRAALQ 289 (450)
Q Consensus 212 ~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~dg~i~vwd~~~~~~~ 289 (450)
....+++.+ .+.++++-...+.|.++++........+. ........+++.|....++++-. ..+.|...++....
T Consensus 80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~-~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~-- 156 (318)
T 3sov_A 80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFW-QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS-- 156 (318)
T ss_dssp CCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS--
T ss_pred CccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEe-CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC--
Confidence 456788887 45555555567899999987543222222 34456789999985554445442 35778888765322
Q ss_pred ccccchhhhhH-hhcccceEEEEEcCCCCEEEEee-CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEE
Q 041325 290 VNKKHSLVQTL-EKHKSAVTALALSTDGTVLYSGA-CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV 367 (450)
Q Consensus 290 ~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 367 (450)
...+ ...-.....|++++++..|+.+. ..+.|..+|+...... ... ...-.....+++
T Consensus 157 -------~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~----------~~~---~~~~~~P~glav 216 (318)
T 3sov_A 157 -------RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQ----------AVV---KGSLPHPFALTL 216 (318)
T ss_dssp -------CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE----------EEE---CSCCSCEEEEEE
T ss_pred -------eEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceE----------EEe---cCCCCCceEEEE
Confidence 1111 11224568999999776666654 4678999998743211 011 112233456676
Q ss_pred eCC-eEEEEeCCCeEEEeeCCCC
Q 041325 368 VSN-LLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 368 ~~~-~l~s~~~dg~v~iwd~~~~ 389 (450)
.++ ++++-...+.|..++..++
T Consensus 217 ~~~~lywtd~~~~~V~~~~~~~G 239 (318)
T 3sov_A 217 FEDILYWTDWSTHSILACNKYTG 239 (318)
T ss_dssp ETTEEEEEETTTTEEEEEETTTC
T ss_pred eCCEEEEEecCCCeEEEEECCCC
Confidence 665 5556566788999988664
No 277
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.04 E-value=0.00051 Score=67.61 Aligned_cols=117 Identities=12% Similarity=0.094 Sum_probs=72.3
Q ss_pred ceEEEEEc-cCCCEEEEEeC-CC----cEEEEecCCC-eEEEEeecccccceEEEEEeecCCcEEEEEcCC----CcEEE
Q 041325 212 TVSALALS-SDGSLLYSTSW-DR----TFKIWRTSDF-RCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD----TKIKV 280 (450)
Q Consensus 212 ~v~~~~~~-~~~~~l~~~~~-dg----~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d----g~i~v 280 (450)
.+...+|+ |||++|+-+.. +| .|+++|+.++ +.+.. ........+.|+|+++.++++...+ ..|.+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~---~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~ 251 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD---KVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWR 251 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC---CEEEECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc---cccCceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence 57788999 99998875543 22 5999999988 63221 1112245788998766555554322 25777
Q ss_pred EeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC---CCcEEEEEcCCC
Q 041325 281 WKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC---DRSILVWERDQG 336 (450)
Q Consensus 281 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~---dg~i~vwd~~~~ 336 (450)
+++.++.. ....+... ........+.|+|||++|+..+. ...|+++|+.++
T Consensus 252 ~~lgt~~~----~~~lv~~~-~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~ 305 (751)
T 2xe4_A 252 HVMGKLQS----EDVCLYEE-HNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKG 305 (751)
T ss_dssp EETTSCGG----GCEEEEEC-CCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSC
T ss_pred EECCCCch----hcEEEEec-CCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCC
Confidence 77755431 00011110 12234567899999998887653 346888888764
No 278
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.04 E-value=0.0055 Score=53.49 Aligned_cols=280 Identities=9% Similarity=0.031 Sum_probs=138.0
Q ss_pred CCcceEEEEE-e-CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEE
Q 041325 74 NSSYIPSLAI-A-GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRV 151 (450)
Q Consensus 74 h~~~v~~~~~-d-~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~i 151 (450)
-...+.+|.| + +..++ ++.+|.| +...+.++.=...... .......+.+|.+.++.++.++.++.|..
T Consensus 34 ~~~~~~~v~~~~~~~~~~-~G~~g~i-~~s~DgG~tW~~~~~~--------~~~~~~~~~~i~~~~~~~~~~g~~g~i~~ 103 (327)
T 2xbg_A 34 TTATILDMSFIDRHHGWL-VGVNATL-METRDGGQTWEPRTLV--------LDHSDYRFNSVSFQGNEGWIVGEPPIMLH 103 (327)
T ss_dssp CSSCEEEEEESSSSCEEE-EETTTEE-EEESSTTSSCEECCCC--------CSCCCCEEEEEEEETTEEEEEEETTEEEE
T ss_pred CCCcEEEEEECCCCcEEE-EcCCCeE-EEeCCCCCCCeECCCC--------CCCCCccEEEEEecCCeEEEEECCCeEEE
Confidence 3457999999 4 55566 4566765 3333444311110000 01123468888998877666666674433
Q ss_pred EEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCC
Q 041325 152 WKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWD 231 (450)
Q Consensus 152 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 231 (450)
..+.++. +..+.... .+.+.+..+.+.+++..++.+ .+
T Consensus 104 -S~DgG~t-------------W~~~~~~~---------------------------~~~~~~~~i~~~~~~~~~~~~-~~ 141 (327)
T 2xbg_A 104 -TTDGGQS-------------WSQIPLDP---------------------------KLPGSPRLIKALGNGSAEMIT-NV 141 (327)
T ss_dssp -ESSTTSS-------------CEECCCCT---------------------------TCSSCEEEEEEEETTEEEEEE-TT
T ss_pred -ECCCCCC-------------ceECcccc---------------------------CCCCCeEEEEEECCCCEEEEe-CC
Confidence 2222211 01110000 012235566666666655554 45
Q ss_pred CcE-EEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEE-EeCcchhhhccccchhhhhHhhcccceEE
Q 041325 232 RTF-KIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKV-WKKLRAALQVNKKHSLVQTLEKHKSAVTA 309 (450)
Q Consensus 232 g~i-~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v-wd~~~~~~~~~~~~~~~~~~~~~~~~i~~ 309 (450)
|.| +-.| .++.-..........+..+.+.+. ..+++++ .+|.+.. +|-. + ..+..+. ......+..
T Consensus 142 g~v~~S~D--gG~tW~~~~~~~~~~~~~~~~~~~-~~~~~~g-~~G~~~~S~d~g-G-----~tW~~~~--~~~~~~~~~ 209 (327)
T 2xbg_A 142 GAIYRTKD--SGKNWQALVQEAIGVMRNLNRSPS-GEYVAVS-SRGSFYSTWEPG-Q-----TAWEPHN--RTTSRRLHN 209 (327)
T ss_dssp CCEEEESS--TTSSEEEEECSCCCCEEEEEECTT-SCEEEEE-TTSSEEEEECTT-C-----SSCEEEE--CCSSSCEEE
T ss_pred ccEEEEcC--CCCCCEEeecCCCcceEEEEEcCC-CcEEEEE-CCCcEEEEeCCC-C-----CceeECC--CCCCCccce
Confidence 544 2222 233222332244567888888863 3355544 4454443 3310 1 1111221 123457888
Q ss_pred EEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccc-cCCccceEEEEEeC-CeEEEEeCCCeEEEeeCC
Q 041325 310 LALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGAL-RGHTKAILCLAVVS-NLLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 310 l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~-~~l~s~~~dg~v~iwd~~ 387 (450)
+.+.+++++++ ++.+|.+++.+...++.-. ..... ..+...+.++.+.+ ..++.++.+|.|. +...
T Consensus 210 ~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~----------~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i~-~S~D 277 (327)
T 2xbg_A 210 MGFTPDGRLWM-IVNGGKIAFSDPDNSENWG----------ELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGALL-CSQD 277 (327)
T ss_dssp EEECTTSCEEE-EETTTEEEEEETTEEEEEC----------CCBCTTSSCCSCEEEEEESSSSCEEEEESTTCEE-EESS
T ss_pred eEECCCCCEEE-EeCCceEEEecCCCCCeeE----------eccCCcccCCcceEEEEecCCCEEEEEeCCCeEE-EeCC
Confidence 99999887655 4567887776433232110 00000 01223577888863 3445555577663 3333
Q ss_pred CCccccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 388 SSVTDHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 388 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
.+ ..+..+.........+.++.|.+++ .++.++.+|.|.-++
T Consensus 278 gG-----~tW~~~~~~~~~~~~~~~v~~~~~~--------------~~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 278 GG-----QTWQQDVDVKKVPSNFYKILFFSPD--------------QGFILGQKGILLRYV 319 (327)
T ss_dssp TT-----SSCEECGGGTTSSSCCCEEEEEETT--------------EEEEECSTTEEEEEC
T ss_pred CC-----cccEEcCccCCCCCCeEEEEEECCC--------------ceEEEcCCceEEEEc
Confidence 32 2233222111234567888887554 466667889776553
No 279
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.99 E-value=0.015 Score=56.98 Aligned_cols=159 Identities=16% Similarity=0.085 Sum_probs=94.9
Q ss_pred CceEEEEEccCC-CEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC-CcEEEEeCcchhh
Q 041325 211 DTVSALALSSDG-SLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD-TKIKVWKKLRAAL 288 (450)
Q Consensus 211 ~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~ 288 (450)
.....|++.+.+ +++++-...+.|.+.++........+. ........|++.|..+.++++-..+ +.|...++....
T Consensus 471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~-~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~- 548 (791)
T 3m0c_C 471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-ENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD- 548 (791)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEE-CTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-
T ss_pred CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEe-CCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCc-
Confidence 356788998866 455555567899999997554333333 3445688999998655455554333 678888875432
Q ss_pred hccccchhhhhHhhcccceEEEEEcCCCCEEEEee-CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEE
Q 041325 289 QVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGA-CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV 367 (450)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 367 (450)
........-.....|++++.+..|+.+. ..+.|..+++....... +. .....-....+|++
T Consensus 549 -------~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~----------v~-~~~~~l~~P~glav 610 (791)
T 3m0c_C 549 -------IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT----------IL-EDEKRLAHPFSLAV 610 (791)
T ss_dssp -------EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE----------EE-ECTTTTSSEEEEEE
T ss_pred -------eEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEE----------Ee-cCCCccCCCCEEEE
Confidence 1111112235678999998777666664 45678888886433210 11 11111223456777
Q ss_pred eCCeEE-EEeCCCeEEEeeCCCC
Q 041325 368 VSNLLF-SGSSDNTIRIWRRSSS 389 (450)
Q Consensus 368 ~~~~l~-s~~~dg~v~iwd~~~~ 389 (450)
.++.|+ +-...+.|...|..++
T Consensus 611 ~~~~lYwtD~~~~~I~~~dk~tG 633 (791)
T 3m0c_C 611 FEDKVFWTDIINEAIFSANRLTG 633 (791)
T ss_dssp ETTEEEEEETTTTEEEEEETTTC
T ss_pred eCCEEEEEECCCCEEEEEeCCCC
Confidence 766444 4445677888876654
No 280
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.96 E-value=0.01 Score=53.99 Aligned_cols=154 Identities=10% Similarity=0.104 Sum_probs=85.9
Q ss_pred ceEEEEEeCC----eEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeeccee
Q 041325 129 AVKSLVVLGD----KLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKC 204 (450)
Q Consensus 129 ~v~~l~~~~~----~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (450)
....|++.++ .|+.+...+.|+.++..++.....
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~------------------------------------------ 177 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK------------------------------------------ 177 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE------------------------------------------
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe------------------------------------------
Confidence 4568888863 366665557888888866632110
Q ss_pred eeecCCCceEEEEEccCCCEEEEEeCC---C-cEEEEecCCCeE-EEEeecccccceEEEEEeecCCcEEEEEcCCCcEE
Q 041325 205 TWVHHVDTVSALALSSDGSLLYSTSWD---R-TFKIWRTSDFRC-LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIK 279 (450)
Q Consensus 205 ~~~~~~~~v~~~~~~~~~~~l~~~~~d---g-~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~ 279 (450)
.........++++++++++++.... . .+...+...+.. ...+ ........+++.|....++++-..++.|+
T Consensus 178 --~~~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~~~~~~--~~~~~P~giavd~~~G~lyv~d~~~~~V~ 253 (433)
T 4hw6_A 178 --TTNIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFTERLSL--CNARGAKTCAVHPQNGKIYYTRYHHAMIS 253 (433)
T ss_dssp --CCCCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTCCEEEE--EECSSBCCCEECTTTCCEEECBTTCSEEE
T ss_pred --ecCCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCeeccccc--cccCCCCEEEEeCCCCeEEEEECCCCEEE
Confidence 0122357899999999944443311 1 133333221111 0111 12344567788874444555666778899
Q ss_pred EEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEe-eCCCcEEEEEcC
Q 041325 280 VWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSG-ACDRSILVWERD 334 (450)
Q Consensus 280 vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g-~~dg~i~vwd~~ 334 (450)
.+|..++... . .+... ........++|+|++++|+.+ ...+.|+.++..
T Consensus 254 ~~d~~~g~~~----~-~~~~~-~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d 303 (433)
T 4hw6_A 254 SYDPATGTLT----E-EEVMM-DTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYN 303 (433)
T ss_dssp EECTTTCCEE----E-EEEEC-SCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBC
T ss_pred EEECCCCeEE----E-EEecc-CCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCC
Confidence 9998654310 0 00000 111223469999999955554 456789998865
No 281
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=97.95 E-value=0.00034 Score=67.76 Aligned_cols=75 Identities=5% Similarity=0.092 Sum_probs=46.8
Q ss_pred ceEEEEEccCCCEEEEEe-CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEc-CC-----CcEEEEeCc
Q 041325 212 TVSALALSSDGSLLYSTS-WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGS-AD-----TKIKVWKKL 284 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-~d-----g~i~vwd~~ 284 (450)
...++++..++++++.|+ .+..+.+||..+.+-...-.......-.+++..+ ++.+++.|+ .+ ..+.+||..
T Consensus 244 ~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~-dg~iyv~GG~~~~~~~~~~~e~yd~~ 322 (656)
T 1k3i_A 244 FCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRVFTIGGSWSGGVFEKNGEVYSPS 322 (656)
T ss_dssp SSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCEEEECCCCCSSSCCCCEEEEETT
T ss_pred ccccccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEec-CCeEEEEeCcccCCcccccceEeCCC
Confidence 344567788999999998 4568999999876543322111112223444444 344777777 34 568999987
Q ss_pred chh
Q 041325 285 RAA 287 (450)
Q Consensus 285 ~~~ 287 (450)
+..
T Consensus 323 t~~ 325 (656)
T 1k3i_A 323 SKT 325 (656)
T ss_dssp TTE
T ss_pred CCc
Confidence 755
No 282
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.94 E-value=0.01 Score=53.40 Aligned_cols=158 Identities=13% Similarity=0.048 Sum_probs=95.4
Q ss_pred CCceEEEEEccCCCEEE-EEeCCCcEEEEecCCCe---EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc
Q 041325 210 VDTVSALALSSDGSLLY-STSWDRTFKIWRTSDFR---CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR 285 (450)
Q Consensus 210 ~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 285 (450)
...+..++|++....|+ +-...+.|..+++.... ....+..........+++.+..+.++++-...+.|.+.++..
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 34678999998555444 44567889999887521 112222134456788888876676777778888999998764
Q ss_pred hhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC--CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceE
Q 041325 286 AALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC--DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAIL 363 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 363 (450)
.. ....+.........|++.|.+.+|+.... .+.|...++...... ......-....
T Consensus 191 ~~--------~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~-------------~~~~~~l~~P~ 249 (400)
T 3p5b_L 191 VK--------RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-------------SLVTENIQWPN 249 (400)
T ss_dssp CS--------EEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE-------------EEECSSCSCEE
T ss_pred Cc--------eEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE-------------EEEECCCCceE
Confidence 33 11111122345789999997666665543 367888887643211 01111223457
Q ss_pred EEEEe--CCeE-EEEeCCCeEEEeeCCC
Q 041325 364 CLAVV--SNLL-FSGSSDNTIRIWRRSS 388 (450)
Q Consensus 364 ~~~~~--~~~l-~s~~~dg~v~iwd~~~ 388 (450)
.|+++ +..| ++=...+.|..+|+..
T Consensus 250 glavd~~~~~lY~aD~~~~~I~~~d~dG 277 (400)
T 3p5b_L 250 GITLDLLSGRLYWVDSKLHSISSIDVNG 277 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred EEEEEeCCCEEEEEECCCCEEEEEeCCC
Confidence 78887 3344 4445567899999864
No 283
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.92 E-value=0.012 Score=53.65 Aligned_cols=125 Identities=9% Similarity=0.001 Sum_probs=75.1
Q ss_pred ceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCeEEEEe-ecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhh
Q 041325 212 TVSALALSS-DGSLLYSTSWDRTFKIWRTSDFRCLESV-KNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQ 289 (450)
Q Consensus 212 ~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 289 (450)
....+++++ ++.++++-..++.|+.+|..++.....+ ..........++++|+++.++++-...+.|+.++.......
T Consensus 229 ~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~ 308 (433)
T 4hw6_A 229 GAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGK 308 (433)
T ss_dssp SBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCC
T ss_pred CCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCcc
Confidence 456788999 7776666667789999999877652222 21222233469999866546677777889999876421100
Q ss_pred ccccchhhhh-----------HhhcccceEEEEE---------cCCCCEEEEeeCCCcEEEEEcCCCc
Q 041325 290 VNKKHSLVQT-----------LEKHKSAVTALAL---------STDGTVLYSGACDRSILVWERDQGN 337 (450)
Q Consensus 290 ~~~~~~~~~~-----------~~~~~~~i~~l~~---------~~~~~~l~~g~~dg~i~vwd~~~~~ 337 (450)
.......... ....-.....+++ .++|++.++-...+.|+.++. ++.
T Consensus 309 ~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~ 375 (433)
T 4hw6_A 309 LAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR 375 (433)
T ss_dssp BCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE
T ss_pred cCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC
Confidence 0000000000 0011234677999 677777777667788999985 443
No 284
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.81 E-value=0.011 Score=53.87 Aligned_cols=73 Identities=7% Similarity=-0.115 Sum_probs=52.3
Q ss_pred ceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCc
Q 041325 212 TVSALALSS-DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKL 284 (450)
Q Consensus 212 ~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 284 (450)
....++++| ++.++++-..++.|..++...+................++++|+++.++++-...+.|..++..
T Consensus 227 ~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d 300 (430)
T 3tc9_A 227 NCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYD 300 (430)
T ss_dssp SCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred CceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCC
Confidence 356788999 7777766667889999999877653333322334578899998665466777778899998765
No 285
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.77 E-value=0.011 Score=51.21 Aligned_cols=122 Identities=15% Similarity=0.292 Sum_probs=76.5
Q ss_pred ceEEEEE--ccC-CC-EEEEEeCCCcEEEEecC-------CCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEE
Q 041325 212 TVSALAL--SSD-GS-LLYSTSWDRTFKIWRTS-------DFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKV 280 (450)
Q Consensus 212 ~v~~~~~--~~~-~~-~l~~~~~dg~i~iwd~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~v 280 (450)
.+..+++ ++. +. ++++...+|.+..|++. +.+.++++. ..+.+..+...+ ..+.|+.+-.+..|..
T Consensus 129 ~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~--lgsq~EgcvvDd-~~g~Lyv~eEd~GIw~ 205 (355)
T 3amr_A 129 EVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK--MNSQTEGMAADD-EYGRLYIAEEDEAIWK 205 (355)
T ss_dssp SCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE--CSSCEEEEEEET-TTTEEEEEETTTEEEE
T ss_pred CeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec--CCCCcceEEEcC-CCCeEEEecccceEEE
Confidence 4566666 663 44 67778889999999882 346677776 345778888876 4558888888876666
Q ss_pred EeCcchhhhccccchhhhhH--hhcccceEEEEE--cCCCC-EEEEee-CCCcEEEEEcC-CCcee
Q 041325 281 WKKLRAALQVNKKHSLVQTL--EKHKSAVTALAL--STDGT-VLYSGA-CDRSILVWERD-QGNYI 339 (450)
Q Consensus 281 wd~~~~~~~~~~~~~~~~~~--~~~~~~i~~l~~--~~~~~-~l~~g~-~dg~i~vwd~~-~~~~~ 339 (450)
++.+-... .....+..+ ......+..|++ .++++ +|++.+ .+..+.+||.. +.+.+
T Consensus 206 ~da~p~~~---~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~v 268 (355)
T 3amr_A 206 FSAEPDGG---SNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYV 268 (355)
T ss_dssp EECSTTSC---SCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEE
T ss_pred EeCCcCCC---CCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEE
Confidence 66432110 011122222 112245777877 45555 666665 57799999997 44444
No 286
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.75 E-value=0.00022 Score=69.23 Aligned_cols=157 Identities=16% Similarity=0.095 Sum_probs=88.5
Q ss_pred eEEEEEcc-CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC-CcEEEEeCcchhhhc
Q 041325 213 VSALALSS-DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD-TKIKVWKKLRAALQV 290 (450)
Q Consensus 213 v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~ 290 (450)
...|++.+ .++++++-...+.|.++++........+. ........|++.|....++++-... +.|..+++.....
T Consensus 455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~-~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-- 531 (699)
T 1n7d_A 455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFR-EQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-- 531 (699)
T ss_dssp CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECC-CSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC--
T ss_pred cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEe-CCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe--
Confidence 45677875 44555555567889999987554333333 2334567888887555444444333 6787777643220
Q ss_pred cccchhhhhHhhcccceEEEEEcCCCCEEEEe-eCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSG-ACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS 369 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 369 (450)
..+ ....-.....|+++|++..|+.+ ...+.|.++++....... + ............|++.+
T Consensus 532 ----~~l--~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~----------~-~~~~~~~~~P~glavd~ 594 (699)
T 1n7d_A 532 ----YSL--VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKT----------I-LEDEKRLAHPFSLAVFE 594 (699)
T ss_dssp ----CEE--SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEE----------E-CCCSSSCSSCCCCEEET
T ss_pred ----eEE--EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEE----------E-EecCCcCCCceEeEEEC
Confidence 000 11122446789999876555544 456789999986432110 1 11111112234556665
Q ss_pred C-eEEEEeCCCeEEEeeCCCC
Q 041325 370 N-LLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 370 ~-~l~s~~~dg~v~iwd~~~~ 389 (450)
+ ++++....+.|..++..++
T Consensus 595 ~~lywtd~~~~~V~~~d~~~G 615 (699)
T 1n7d_A 595 DKVFWTDIINEAIFSANRLTG 615 (699)
T ss_dssp TEEEEECSTTTCEEEEETTTE
T ss_pred CEEEEEeCCCCeEEEEEccCC
Confidence 5 5555566788999987654
No 287
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.70 E-value=0.02 Score=49.57 Aligned_cols=198 Identities=14% Similarity=0.124 Sum_probs=115.6
Q ss_pred ceEEEEEe---CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC--CeE-EEEeCCCeEE
Q 041325 77 YIPSLAIA---GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG--DKL-FSAHQDHKIR 150 (450)
Q Consensus 77 ~v~~~~~d---~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l-~s~~~dg~i~ 150 (450)
...+++|| +.++++-...+.|..+++++...... .....-.....+++.. ..| ++-...+.|.
T Consensus 36 ~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~-----------~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~ 104 (318)
T 3sov_A 36 DAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN-----------VVVSGLLSPDGLACDWLGEKLYWTDSETNRIE 104 (318)
T ss_dssp EEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE-----------EEEECCSCCCEEEEETTTTEEEEEETTTTEEE
T ss_pred ccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE-----------EEcCCCCCccEEEEEcCCCeEEEEECCCCEEE
Confidence 45677784 55666666778898888876532111 1112223455667663 333 4444567788
Q ss_pred EEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe-
Q 041325 151 VWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS- 229 (450)
Q Consensus 151 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~- 229 (450)
+++++...... + ..........++++|.+..|+.+.
T Consensus 105 ~~~~dG~~~~~--------------l-----------------------------~~~~~~~P~giavdp~~g~ly~td~ 141 (318)
T 3sov_A 105 VSNLDGSLRKV--------------L-----------------------------FWQELDQPRAIALDPSSGFMYWTDW 141 (318)
T ss_dssp EEETTSCSCEE--------------E-----------------------------ECSSCSSEEEEEEEGGGTEEEEEEC
T ss_pred EEECCCCcEEE--------------E-----------------------------EeCCCCCccEEEEeCCCCEEEEEec
Confidence 88876542100 0 001223567899998655555554
Q ss_pred -CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceE
Q 041325 230 -WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVT 308 (450)
Q Consensus 230 -~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~ 308 (450)
..+.|...++... ....+....-...+.|++++..+.+.++-...+.|..+|+..... . .+ .........
T Consensus 142 ~~~~~I~r~~~dG~-~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-----~-~~--~~~~~~~P~ 212 (318)
T 3sov_A 142 GEVPKIERAGMDGS-SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-----Q-AV--VKGSLPHPF 212 (318)
T ss_dssp SSSCEEEEEETTSC-SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-----E-EE--ECSCCSCEE
T ss_pred CCCCEEEEEEcCCC-CeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-----E-EE--ecCCCCCce
Confidence 3578888887633 222332123345689999986776777777888999999864320 0 11 111234456
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEEcCCCce
Q 041325 309 ALALSTDGTVLYSGACDRSILVWERDQGNY 338 (450)
Q Consensus 309 ~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~ 338 (450)
.+++. .+.++++-...+.|..++..+++.
T Consensus 213 glav~-~~~lywtd~~~~~V~~~~~~~G~~ 241 (318)
T 3sov_A 213 ALTLF-EDILYWTDWSTHSILACNKYTGEG 241 (318)
T ss_dssp EEEEE-TTEEEEEETTTTEEEEEETTTCCS
T ss_pred EEEEe-CCEEEEEecCCCeEEEEECCCCCc
Confidence 77775 344555555678899999877653
No 288
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=97.70 E-value=0.0094 Score=56.55 Aligned_cols=76 Identities=16% Similarity=0.169 Sum_probs=47.1
Q ss_pred EEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC------eEEEEe------CCCe
Q 041325 81 LAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD------KLFSAH------QDHK 148 (450)
Q Consensus 81 ~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~------~l~s~~------~dg~ 148 (450)
+++.+..++.++.|+.|..+|..+++............. ......++ ...+ .+++++ .+|.
T Consensus 113 ~a~~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~---~~~~~sP~----v~~~~~~G~~~v~vg~~~~e~~~~g~ 185 (582)
T 1flg_A 113 AAIYGDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAG---YTMTGAPT----IVKDGKTGKVLLIHGSSGDEFGVVGR 185 (582)
T ss_dssp CEEETTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGT---CBCCSCCE----EEECTTTCCEEEEECCBCGGGCCBCE
T ss_pred cEEECCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcC---cccccCCE----EeCCCcCCcEEEEEeccccccCCCCE
Confidence 445677888899999999999999998766433211000 00001111 1233 455554 3789
Q ss_pred EEEEEcCCCceeEEe
Q 041325 149 IRVWKIDNNTSAYYS 163 (450)
Q Consensus 149 i~iw~~~~~~~~~~~ 163 (450)
|..+|.++++.....
T Consensus 186 v~alD~~tG~~~W~~ 200 (582)
T 1flg_A 186 LFARDPDTGEEIWMR 200 (582)
T ss_dssp EEEECTTTCCEEEEE
T ss_pred EEEEECCCCCEEeec
Confidence 999999988876543
No 289
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.67 E-value=0.018 Score=49.52 Aligned_cols=148 Identities=11% Similarity=0.183 Sum_probs=76.8
Q ss_pred CCCEEEEEeCCC-----cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC-------CcEEEEeCcchhh
Q 041325 221 DGSLLYSTSWDR-----TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD-------TKIKVWKKLRAAL 288 (450)
Q Consensus 221 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~i~vwd~~~~~~ 288 (450)
++.+++.|+.++ .+.+||+.+.+-...-.......-.+++.. ++.+++.|+.+ ..+.+||+.+.+.
T Consensus 108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W 185 (302)
T 2xn4_A 108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEW 185 (302)
T ss_dssp TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence 466677776543 577888887653332111112222233333 45566666543 3588899876553
Q ss_pred hccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC-----CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceE
Q 041325 289 QVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD-----RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAIL 363 (450)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 363 (450)
.. +..+.........+.+ ++++++.|+.+ ..+.+||+.+.+.... ..+......-.
T Consensus 186 ~~------~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-----------~~~~~~r~~~~ 246 (302)
T 2xn4_A 186 TY------IAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQV-----------ADMNMCRRNAG 246 (302)
T ss_dssp EE------ECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEE-----------CCCSSCCBSCE
T ss_pred EE------CCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeC-----------CCCCCccccCe
Confidence 21 1111111122222333 67788888764 3688999987654321 11111111122
Q ss_pred EEEEeCCeEEEEeCCC-----eEEEeeCCCC
Q 041325 364 CLAVVSNLLFSGSSDN-----TIRIWRRSSS 389 (450)
Q Consensus 364 ~~~~~~~~l~s~~~dg-----~v~iwd~~~~ 389 (450)
.+...+.+++.|+.++ .+.+||..+.
T Consensus 247 ~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 247 VCAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp EEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred EEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 3344555677777653 4788888753
No 290
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=97.64 E-value=0.027 Score=49.10 Aligned_cols=155 Identities=10% Similarity=0.145 Sum_probs=86.3
Q ss_pred CCceEEEEEccCCCEEEEEeCCCcEEEEec--CCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchh
Q 041325 210 VDTVSALALSSDGSLLYSTSWDRTFKIWRT--SDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAA 287 (450)
Q Consensus 210 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~ 287 (450)
...+..+++.+++.+++.+...+..+-+|- .+-+.+ .......+..+.+.+. +.++.++.+|.+++.+...++
T Consensus 162 ~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~---~~~~~~~~~~~~~~~~--g~~~~~~~~G~~~~s~~D~G~ 236 (327)
T 2xbg_A 162 IGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPH---NRTTSRRLHNMGFTPD--GRLWMIVNGGKIAFSDPDNSE 236 (327)
T ss_dssp CCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEE---ECCSSSCEEEEEECTT--SCEEEEETTTEEEEEETTEEE
T ss_pred CcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeEC---CCCCCCccceeEECCC--CCEEEEeCCceEEEecCCCCC
Confidence 346788899998887776654444444442 233333 2234567888888753 345556667887776422222
Q ss_pred hhccccchhhhhH-hhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEE
Q 041325 288 LQVNKKHSLVQTL-EKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLA 366 (450)
Q Consensus 288 ~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 366 (450)
.+..+..- ......+..+++.+++.+++++. +|.| .+....++.- ............+.++.
T Consensus 237 -----tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW----------~~~~~~~~~~~~~~~v~ 299 (327)
T 2xbg_A 237 -----NWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTW----------QQDVDVKKVPSNFYKIL 299 (327)
T ss_dssp -----EECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSC----------EECGGGTTSSSCCCEEE
T ss_pred -----eeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCccc----------EEcCccCCCCCCeEEEE
Confidence 11111110 01223578899998877766654 6766 3344433211 11111112234567777
Q ss_pred Ee-CCeEEEEeCCCeEEEeeC
Q 041325 367 VV-SNLLFSGSSDNTIRIWRR 386 (450)
Q Consensus 367 ~~-~~~l~s~~~dg~v~iwd~ 386 (450)
+. ++.+++++.+|.|.-++-
T Consensus 300 ~~~~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 300 FFSPDQGFILGQKGILLRYVT 320 (327)
T ss_dssp EEETTEEEEECSTTEEEEECC
T ss_pred EECCCceEEEcCCceEEEEcC
Confidence 74 567888888998776653
No 291
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.62 E-value=0.062 Score=52.78 Aligned_cols=157 Identities=11% Similarity=0.024 Sum_probs=95.2
Q ss_pred CCceEEEEEccC-CCEEEEEeCCCcEEEEecCCC----eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCc
Q 041325 210 VDTVSALALSSD-GSLLYSTSWDRTFKIWRTSDF----RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKL 284 (450)
Q Consensus 210 ~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 284 (450)
...+..++|++. +.++++-...+.|+.+++... .....+. ........|++.+..+.++++-...+.|.+.++.
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~-~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ld 501 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK 501 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEe-cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCC
Confidence 446788999985 444555556688988988753 1222222 2445677899987677778888888999999986
Q ss_pred chhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC-C-CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccce
Q 041325 285 RAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC-D-RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAI 362 (450)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~-d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 362 (450)
.... ...+.........|++.|.+.+|+.... + +.|.+.++...... ......-...
T Consensus 502 G~~~--------~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~-------------~lv~~~l~~P 560 (791)
T 3m0c_C 502 GVKR--------KTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-------------SLVTENIQWP 560 (791)
T ss_dssp SSSE--------EEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE-------------EEECSSCSCE
T ss_pred CCeE--------EEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceE-------------EEEeCCCCCc
Confidence 4331 1111122345789999997666666543 2 67888887643321 1111122356
Q ss_pred EEEEEe--CCeE-EEEeCCCeEEEeeCCC
Q 041325 363 LCLAVV--SNLL-FSGSSDNTIRIWRRSS 388 (450)
Q Consensus 363 ~~~~~~--~~~l-~s~~~dg~v~iwd~~~ 388 (450)
..|+++ ...| ++=...+.|...++..
T Consensus 561 ~GLavD~~~~~LYwaD~~~~~I~~~d~dG 589 (791)
T 3m0c_C 561 NGITLDLLSGRLYWVDSKLHSISSIDVNG 589 (791)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred eEEEEecCCCeEEEEeCCCCcEEEEecCC
Confidence 778877 3344 4444567788888864
No 292
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=97.59 E-value=0.026 Score=48.47 Aligned_cols=148 Identities=11% Similarity=0.158 Sum_probs=76.2
Q ss_pred CCCEEEEEeCC-----CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCC-----cEEEEeCcchhhhc
Q 041325 221 DGSLLYSTSWD-----RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADT-----KIKVWKKLRAALQV 290 (450)
Q Consensus 221 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~vwd~~~~~~~~ 290 (450)
++.+++.|+.+ ..+.+||..+.+-...-.......-.+++.. ++.+++.|+.++ .+.+||+.+.+..
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~- 137 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWF- 137 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEE-
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEe-
Confidence 56667777644 3588899887653322211111122233333 455667776553 5778887665422
Q ss_pred cccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC-------CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceE
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD-------RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAIL 363 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d-------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 363 (450)
.+..+.........+.+ ++++++.|+.+ ..+.+||+.+.+.... ..+........
T Consensus 138 -----~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~-----------~~~p~~r~~~~ 199 (302)
T 2xn4_A 138 -----HVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYI-----------AEMSTRRSGAG 199 (302)
T ss_dssp -----EECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEEEEE-----------CCCSSCCBSCE
T ss_pred -----ecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEEC-----------CCCcccccccc
Confidence 11112111222222223 66777777643 3588999887654321 11111111223
Q ss_pred EEEEeCCeEEEEeCC-----CeEEEeeCCCC
Q 041325 364 CLAVVSNLLFSGSSD-----NTIRIWRRSSS 389 (450)
Q Consensus 364 ~~~~~~~~l~s~~~d-----g~v~iwd~~~~ 389 (450)
++.+.+.+++.|+.+ ..+.+||+.+.
T Consensus 200 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 230 (302)
T 2xn4_A 200 VGVLNNLLYAVGGHDGPLVRKSVEVYDPTTN 230 (302)
T ss_dssp EEEETTEEEEECCBSSSSBCCCEEEEETTTT
T ss_pred EEEECCEEEEECCCCCCcccceEEEEeCCCC
Confidence 344455677777664 36888998753
No 293
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.57 E-value=0.03 Score=48.05 Aligned_cols=147 Identities=10% Similarity=0.107 Sum_probs=77.1
Q ss_pred CCCEEEEEeCC-----CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC-----CcEEEEeCcchhhhc
Q 041325 221 DGSLLYSTSWD-----RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD-----TKIKVWKKLRAALQV 290 (450)
Q Consensus 221 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~ 290 (450)
++++++.|+.+ ..+.+||+.+.+-...-.......-.++... ++.+++.|+.+ ..+.+||+.+.+...
T Consensus 112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~ 189 (301)
T 2vpj_A 112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTN 189 (301)
T ss_dssp TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence 56666666643 3588899887653322211112222233333 45567777654 458889987665321
Q ss_pred cccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC-----CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEE
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD-----RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL 365 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 365 (450)
+..+.........+.+ ++++++.|+.+ ..+.+||+.+.+.... ..+........++
T Consensus 190 ------~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~-----------~~~p~~r~~~~~~ 250 (301)
T 2vpj_A 190 ------VTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV-----------TSMTTPRCYVGAT 250 (301)
T ss_dssp ------ECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEE-----------CCCSSCCBSCEEE
T ss_pred ------CCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEEC-----------CCCCCcccceeEE
Confidence 1111111122222333 67777887764 4689999987764321 1111111122334
Q ss_pred EEeCCeEEEEeCC-----CeEEEeeCCC
Q 041325 366 AVVSNLLFSGSSD-----NTIRIWRRSS 388 (450)
Q Consensus 366 ~~~~~~l~s~~~d-----g~v~iwd~~~ 388 (450)
...+.+++.|+.+ ..+.+||.++
T Consensus 251 ~~~~~i~v~GG~~~~~~~~~v~~yd~~~ 278 (301)
T 2vpj_A 251 VLRGRLYAIAGYDGNSLLSSIECYDPII 278 (301)
T ss_dssp EETTEEEEECCBCSSSBEEEEEEEETTT
T ss_pred EECCEEEEEcCcCCCcccccEEEEcCCC
Confidence 4455566777665 3577888775
No 294
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=97.55 E-value=0.033 Score=47.99 Aligned_cols=147 Identities=10% Similarity=0.153 Sum_probs=76.1
Q ss_pred CCCEEEEEeCC-----CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC-----CcEEEEeCcchhhhc
Q 041325 221 DGSLLYSTSWD-----RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD-----TKIKVWKKLRAALQV 290 (450)
Q Consensus 221 ~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~~~~~ 290 (450)
++++++.|+.+ ..+.+||..+.+-...-.......-.+++.. ++.+++.|+.+ ..+.+||+.+.+...
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 198 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRM 198 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence 45666666533 4688899887653322111111122233333 45567777654 458889987655321
Q ss_pred cccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC-----CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEE
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD-----RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL 365 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 365 (450)
+..+.........+.+ ++++++.|+.+ ..+.+||+.+.+... ...+........++
T Consensus 199 ------~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~-----------~~~~p~~r~~~~~~ 259 (308)
T 1zgk_A 199 ------ITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTF-----------VAPMKHRRSALGIT 259 (308)
T ss_dssp ------CCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE-----------CCCCSSCCBSCEEE
T ss_pred ------CCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEE-----------CCCCCCCccceEEE
Confidence 1112111222223333 67778888765 568999998765432 11111111122333
Q ss_pred EEeCCeEEEEeCC-----CeEEEeeCCC
Q 041325 366 AVVSNLLFSGSSD-----NTIRIWRRSS 388 (450)
Q Consensus 366 ~~~~~~l~s~~~d-----g~v~iwd~~~ 388 (450)
...+.+++.|+.+ ..+.+||+.+
T Consensus 260 ~~~~~i~v~GG~~~~~~~~~v~~yd~~~ 287 (308)
T 1zgk_A 260 VHQGRIYVLGGYDGHTFLDSVECYDPDT 287 (308)
T ss_dssp EETTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred EECCEEEEEcCcCCCcccceEEEEcCCC
Confidence 3445566777654 3577888774
No 295
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.53 E-value=0.052 Score=49.78 Aligned_cols=120 Identities=9% Similarity=0.073 Sum_probs=71.0
Q ss_pred ceEEEEE-------ccCCCEEEEEeCCC-------cEEEEecCC-CeEE-----EEeecccccceEEEEEeecCCcEEEE
Q 041325 212 TVSALAL-------SSDGSLLYSTSWDR-------TFKIWRTSD-FRCL-----ESVKNAHDDAINAIVVSKSNDGFVYT 271 (450)
Q Consensus 212 ~v~~~~~-------~~~~~~l~~~~~dg-------~i~iwd~~~-~~~~-----~~~~~~~~~~v~~~~~~~~~~~~l~~ 271 (450)
....++| +++++.|+++...+ .|.+.+... +... ..+. .......++++|....++++
T Consensus 187 ~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~--~~~~p~giavdp~~g~LYvt 264 (496)
T 3kya_A 187 RIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA--AYKQCNGATIHPINGELYFN 264 (496)
T ss_dssp BEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE--EESCCCCEEECTTTCCEEEE
T ss_pred CCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec--cCCCceEEEEcCCCCeEEEE
Confidence 5788999 99999666665543 255665333 2221 1222 12345677888866666777
Q ss_pred EcCCCcEEEEeCc-------chhh-hcccc-----chhhhhHhhcccceEEEEEcCCCCEEEEe-eCCCcEEEEEcC
Q 041325 272 GSADTKIKVWKKL-------RAAL-QVNKK-----HSLVQTLEKHKSAVTALALSTDGTVLYSG-ACDRSILVWERD 334 (450)
Q Consensus 272 ~~~dg~i~vwd~~-------~~~~-~~~~~-----~~~~~~~~~~~~~i~~l~~~~~~~~l~~g-~~dg~i~vwd~~ 334 (450)
-..++.|..+|+. ++.. ..... ...+... ........|+|+|+|++|+.+ +....|+.++..
T Consensus 265 d~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 265 SYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp ETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred ECCCCEEEEEecccccccccCceeecccccccccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 8888899999986 3321 00000 0001111 123456889999999965555 456788886654
No 296
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.45 E-value=0.043 Score=46.72 Aligned_cols=200 Identities=10% Similarity=0.100 Sum_probs=119.9
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccc
Q 041325 215 ALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKH 294 (450)
Q Consensus 215 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 294 (450)
+.-.+|..+.+|.-. ...+.++|+++.+.+..+. ....|.-=.|. ....|+..+. ..|+-|++.... ...+-.
T Consensus 71 sAIMnP~~~ViALra-g~~LQiFnletK~klks~~--~~e~VvfWkWi--s~~~L~lVT~-taVyHWs~~~~s-~P~kvF 143 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWI--SLNTVALVTD-NAVYHWSMEGES-QPVKMF 143 (365)
T ss_dssp EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEE--CSSCEEEEEEC--SSSEEEEEES-SEEEEEESSTTC-CCEEEE
T ss_pred eeeeCCCccEEEEec-CCeEEEechHHhhhhccee--cCCccEEEEec--CCCeEEEEcC-CcEEEEcccCCC-CCceee
Confidence 455688888777765 6889999999999998887 45677766776 4545544443 569999986522 110111
Q ss_pred hhhhhHhhcccceEEEEEcCCCCEEEEeeC-------CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEE
Q 041325 295 SLVQTLEKHKSAVTALALSTDGTVLYSGAC-------DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV 367 (450)
Q Consensus 295 ~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 367 (450)
.....+ ....|..-..+++.++++..+- .|.+.+|..+.+ ..+.+.+|...-..+..
T Consensus 144 dR~~~L--~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~--------------~sQ~ieGhaa~F~~~~~ 207 (365)
T 2xzh_A 144 DRHSSL--AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--------------VSQPIEGHAASFAQFKM 207 (365)
T ss_dssp ECCGGG--TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT--------------EEEEECCSEEEEEEECC
T ss_pred ecchhc--ccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeeccc--------------ccceeeeeeeeeEEEec
Confidence 111122 2466777788888887765442 477888988754 23456666555444444
Q ss_pred eCC-----eEEEEeC---CCeEEEeeCCCC-ccccCCCceeEEEec---CCCcceEEEEEEecCCCCCCCCCCCCceEEE
Q 041325 368 VSN-----LLFSGSS---DNTIRIWRRSSS-VTDHQKGYSCLAVLE---GHRRPVKCLTAVVDSDYSNRNSDHSSTSFLV 435 (450)
Q Consensus 368 ~~~-----~l~s~~~---dg~v~iwd~~~~-~~~~~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l 435 (450)
.++ +++-+.. .+.+.|-++... .....-..+.+..+- .-.+---++..++... ++
T Consensus 208 ~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kyg-------------vi 274 (365)
T 2xzh_A 208 EGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-------------VV 274 (365)
T ss_dssp TTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTT-------------EE
T ss_pred CCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCC-------------EE
Confidence 433 2332222 258889988543 111111112222221 1233345666666666 77
Q ss_pred EEcccCCcEEEEEeC
Q 041325 436 YSGSLDCEIKIWQIR 450 (450)
Q Consensus 436 ~s~~~Dg~i~iw~l~ 450 (450)
..-..-|.|++||++
T Consensus 275 yviTK~G~ihlyDle 289 (365)
T 2xzh_A 275 FLITKYGYIHLYDLE 289 (365)
T ss_dssp EEEETTSEEEEEETT
T ss_pred EEEeCCcEEEEEEcc
Confidence 788889999999974
No 297
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.44 E-value=0.046 Score=47.02 Aligned_cols=148 Identities=7% Similarity=0.099 Sum_probs=76.5
Q ss_pred CCCEEEEEeCC----CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC------CcEEEEeCcchhhhc
Q 041325 221 DGSLLYSTSWD----RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD------TKIKVWKKLRAALQV 290 (450)
Q Consensus 221 ~~~~l~~~~~d----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~ 290 (450)
++.+++.|+.+ ..+.+||..+.+-...-.......-.+++.. ++.+++.|+.+ ..+.+||..+.+...
T Consensus 55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~ 132 (306)
T 3ii7_A 55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT 132 (306)
T ss_dssp TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence 56667777654 5688899887653322211111122223333 55577777655 458889987655221
Q ss_pred cccchhhhhHhhcccceEEEEEcCCCCEEEEeeC---------CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccc
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC---------DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA 361 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~---------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (450)
+..+.........+.+ ++++++.|+. -..+.+||+.+.+... ...+......
T Consensus 133 ------~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~-----------~~~~p~~r~~ 193 (306)
T 3ii7_A 133 ------KPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTE-----------LCPMIEARKN 193 (306)
T ss_dssp ------ECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTTTEEEE-----------ECCCSSCCBS
T ss_pred ------CCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCCCeEEE-----------CCCccchhhc
Confidence 1111111122222222 6677777764 3458899988765431 1111111112
Q ss_pred eEEEEEeCCeEEEEeCC-----CeEEEeeCCCC
Q 041325 362 ILCLAVVSNLLFSGSSD-----NTIRIWRRSSS 389 (450)
Q Consensus 362 v~~~~~~~~~l~s~~~d-----g~v~iwd~~~~ 389 (450)
-.++...+.+++.|+.+ ..+.+||+.+.
T Consensus 194 ~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~ 226 (306)
T 3ii7_A 194 HGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLN 226 (306)
T ss_dssp CEEEEETTEEEEECCEETTEEBCCEEEEETTTT
T ss_pred ceEEEECCEEEEEeCCCCCCCCceEEEeeCCCC
Confidence 23333445566666653 35788888753
No 298
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.43 E-value=0.047 Score=46.79 Aligned_cols=173 Identities=7% Similarity=0.059 Sum_probs=102.8
Q ss_pred EecCCCceEEEEEeC--CeEEEEe-CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEe
Q 041325 123 ATGNGDAVKSLVVLG--DKLFSAH-QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVR 199 (450)
Q Consensus 123 ~~~h~~~v~~l~~~~--~~l~s~~-~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (450)
+.....--.+++|.+ ..++.++ ..++|..|+...+.... + .++.... .
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~--------------~-~~~~~s~-------~------- 58 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFN--------------V-VIDGASS-------N------- 58 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEE--------------E-CCTTTCC-------S-------
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEE--------------E-ecCCccc-------c-------
Confidence 344445566788886 3466665 68999999987552211 1 1110000 0
Q ss_pred ecceeeeecCCCceEEEEE---ccCCCEEEEEe-------------CCCcEEEEecC---CCeEEEEeecc---------
Q 041325 200 RHKKCTWVHHVDTVSALAL---SSDGSLLYSTS-------------WDRTFKIWRTS---DFRCLESVKNA--------- 251 (450)
Q Consensus 200 ~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~~-------------~dg~i~iwd~~---~~~~~~~~~~~--------- 251 (450)
......+..+.+ .++++++++.. .+..|..||+. +++.+......
T Consensus 59 -------g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~ 131 (334)
T 2p9w_A 59 -------GDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKK 131 (334)
T ss_dssp -------SCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHH
T ss_pred -------CCCcceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCcccccccccc
Confidence 000113578888 68877776543 26789999999 77766555411
Q ss_pred ---cccceEEEEEeecCCcEEEEEcCC-CcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCc
Q 041325 252 ---HDDAINAIVVSKSNDGFVYTGSAD-TKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRS 327 (450)
Q Consensus 252 ---~~~~v~~~~~~~~~~~~l~~~~~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~ 327 (450)
.....+.++..+.++ ..++++.. +.|..++....... .+.............+.|+++|+|+.|++...+|.
T Consensus 132 ~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV~pdG~~~~---~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~ 207 (334)
T 2p9w_A 132 AGKRPFGVVQSAQDRDGN-SYVAFALGMPAIARVSADGKTVS---TFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRA 207 (334)
T ss_dssp HSSCCEEEEEEEECTTSC-EEEEEEESSCEEEEECTTSCCEE---EEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSS
T ss_pred ccccccCCceeEECCCCC-EEEeCCCCCCeEEEEeCCCCEEe---eeeecCCCcccccCcceEEEeCCCCEEEEEcCCCe
Confidence 113578899987444 56666666 77666665432100 00000000112234678999999999888877999
Q ss_pred EEEEEcCC
Q 041325 328 ILVWERDQ 335 (450)
Q Consensus 328 i~vwd~~~ 335 (450)
|..+|+..
T Consensus 208 L~~fD~~~ 215 (334)
T 2p9w_A 208 LTAFDVSK 215 (334)
T ss_dssp EEEEECSS
T ss_pred EEEEcCCC
Confidence 99999884
No 299
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.40 E-value=0.052 Score=46.71 Aligned_cols=147 Identities=10% Similarity=0.116 Sum_probs=77.5
Q ss_pred CCCEEEEEeCC------CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcC---------CCcEEEEeCcc
Q 041325 221 DGSLLYSTSWD------RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSA---------DTKIKVWKKLR 285 (450)
Q Consensus 221 ~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~---------dg~i~vwd~~~ 285 (450)
++++++.|+.+ ..+.+||..+.+-...-.......-.+++.. ++.+++.|+. -..+.+||+.+
T Consensus 101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~ 178 (306)
T 3ii7_A 101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPAT 178 (306)
T ss_dssp TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTT
T ss_pred CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCC
Confidence 56677777654 4688999887653322111111122223333 4556666653 34588899877
Q ss_pred hhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC-----CcEEEEEcCCCceeeeCCCCCCceeeeccccCCcc
Q 041325 286 AALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD-----RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK 360 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (450)
.+.. .+..+......-..+.+ ++++++.|+.+ ..+.+||+.+.+... ...+.....
T Consensus 179 ~~W~------~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~-----------~~~~p~~r~ 239 (306)
T 3ii7_A 179 ETWT------ELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKM-----------VSPMPWKGV 239 (306)
T ss_dssp TEEE------EECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEE-----------CCCCSCCBS
T ss_pred CeEE------ECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEE-----------CCCCCCCcc
Confidence 6532 12112111122222233 67777777654 458899988765431 111111122
Q ss_pred ceEEEEEeCCeEEEEeCC-----CeEEEeeCCC
Q 041325 361 AILCLAVVSNLLFSGSSD-----NTIRIWRRSS 388 (450)
Q Consensus 361 ~v~~~~~~~~~l~s~~~d-----g~v~iwd~~~ 388 (450)
...++...+.+++.|+.+ ..+.+||..+
T Consensus 240 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~ 272 (306)
T 3ii7_A 240 TVKCAAVGSIVYVLAGFQGVGRLGHILEYNTET 272 (306)
T ss_dssp CCEEEEETTEEEEEECBCSSSBCCEEEEEETTT
T ss_pred ceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCC
Confidence 223444455677777754 4688888875
No 300
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=97.39 E-value=0.1 Score=49.88 Aligned_cols=224 Identities=13% Similarity=0.045 Sum_probs=128.6
Q ss_pred EEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe---EEEEeCCCeEEEEEcCCCceeEEe
Q 041325 87 LLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK---LFSAHQDHKIRVWKIDNNTSAYYS 163 (450)
Q Consensus 87 ~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~---l~s~~~dg~i~iw~~~~~~~~~~~ 163 (450)
+|+-+ ..+.|+.-++++....... ....-..+..|+|.+.. +++-..++.|..++++.......
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~-----------~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v- 74 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAI-----------PLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHV- 74 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEEC-----------CCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE-
T ss_pred EEEEE-eCCcEEEEECCCCCcceEE-----------EcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEE-
Confidence 44444 3467888888765432220 11223467889998533 44445578888888765421100
Q ss_pred ccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCC-CEEEEEeCCCcEEEEecCCC
Q 041325 164 TSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDG-SLLYSTSWDRTFKIWRTSDF 242 (450)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~ 242 (450)
+. ........+++.+.+ ++.++-...+.|.+.++...
T Consensus 75 ---------------~~---------------------------~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~ 112 (628)
T 4a0p_A 75 ---------------VE---------------------------FGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQ 112 (628)
T ss_dssp ---------------EC---------------------------SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTST
T ss_pred ---------------Ee---------------------------CCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCC
Confidence 00 011245678888754 44555556788999998754
Q ss_pred eEEEEeecccccceEEEEEeecCCcEEEEE-cCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEE
Q 041325 243 RCLESVKNAHDDAINAIVVSKSNDGFVYTG-SADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYS 321 (450)
Q Consensus 243 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~ 321 (450)
.....+. ........|++.|..+.++++- +..+.|...++.... ...+...-.....|+++++++.|+.
T Consensus 113 ~~~~l~~-~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~---------~~~l~~~~~~P~GlalD~~~~~LY~ 182 (628)
T 4a0p_A 113 HRQVLVW-KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSE---------RTTLVPNVGRANGLTIDYAKRRLYW 182 (628)
T ss_dssp TCEEEEC-SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCS---------CEEEECSCSSEEEEEEETTTTEEEE
T ss_pred cEEEEEe-CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCc---------eEEEECCCCCcceEEEccccCEEEE
Confidence 3222222 3445678999998555444443 235677777765432 1111113456789999997776666
Q ss_pred ee-CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEe-CCCeEEEeeCCCC
Q 041325 322 GA-CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGS-SDNTIRIWRRSSS 389 (450)
Q Consensus 322 g~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~-~dg~v~iwd~~~~ 389 (450)
+. ..+.|..+|+...... . +...-....++++.++.|+... ..+.|...|..++
T Consensus 183 aD~~~~~I~~~d~dG~~~~-----------v---~~~~l~~P~glav~~~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 183 TDLDTNLIESSNMLGLNRE-----------V---IADDLPHPFGLTQYQDYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp EETTTTEEEEEETTSCSCE-----------E---EEECCSCEEEEEEETTEEEEEETTTTEEEEEETTTC
T ss_pred EECCCCEEEEEcCCCCceE-----------E---eeccCCCceEEEEECCEEEEecCCCCEEEEEECCCC
Confidence 65 4678999998753211 1 1111223457777766555444 5788888887654
No 301
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=97.29 E-value=0.018 Score=56.58 Aligned_cols=154 Identities=12% Similarity=0.156 Sum_probs=80.4
Q ss_pred EEEEEccCCCEEEEEeCC-----CcEEEEecCCCeE--EEEeecccccceEEEEEeecCCcEEEEEcC--CCcEEEEeCc
Q 041325 214 SALALSSDGSLLYSTSWD-----RTFKIWRTSDFRC--LESVKNAHDDAINAIVVSKSNDGFVYTGSA--DTKIKVWKKL 284 (450)
Q Consensus 214 ~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~--dg~i~vwd~~ 284 (450)
..++|+||++.|+....+ ..|..+++.++.. ...+..........+.|+|++..++++... ...|.++|+.
T Consensus 224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~ 303 (751)
T 2xe4_A 224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR 303 (751)
T ss_dssp SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence 457899999888777654 3688888876532 222221233445678899876644444432 4467888886
Q ss_pred chhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC----CcEEEEEcCCCceeeeCCCCCCceeeecc-ccCCc
Q 041325 285 RAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD----RSILVWERDQGNYIVDGDDDSGHMVLKGA-LRGHT 359 (450)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 359 (450)
++.. ................++.|+.++.+++....+ ..|..+|+.++... .. +..+.
T Consensus 304 ~~~~----~~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~-------------~~~li~~~ 366 (751)
T 2xe4_A 304 KGNA----HNTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDW-------------SHVLVDHS 366 (751)
T ss_dssp SCTT----CCCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCC-------------CCEEECCC
T ss_pred CCCC----CceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCcccc-------------eeeEECCC
Confidence 5420 000011111223444556555433344444333 35666776542100 11 11122
Q ss_pred --cceEEEEEeCC-eEEEEeCCCeEEEe
Q 041325 360 --KAILCLAVVSN-LLFSGSSDNTIRIW 384 (450)
Q Consensus 360 --~~v~~~~~~~~-~l~s~~~dg~v~iw 384 (450)
..+..+.+.++ ++++...++..++|
T Consensus 367 ~~~~l~~~~~~~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 367 EDVFMESIAVRSNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp SSEEEEEEEECSSEEEEEEEETTEEEEE
T ss_pred CCcEEEEEEEECCEEEEEEEeCCEEEEE
Confidence 24556676666 55666777764444
No 302
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.28 E-value=0.077 Score=45.95 Aligned_cols=197 Identities=14% Similarity=0.166 Sum_probs=113.7
Q ss_pred CCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecC---Cc---E-EEEEcC--CCcEEEEeCc--chhhh
Q 041325 221 DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSN---DG---F-VYTGSA--DTKIKVWKKL--RAALQ 289 (450)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~---~-l~~~~~--dg~i~vwd~~--~~~~~ 289 (450)
...+++.....+-+.+||+ +++.+..+. .+.++.+..-|.- .. + +++.-. ++.|.+|++. ++..
T Consensus 39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~---~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l- 113 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSL-DGKMLHSYN---TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTL- 113 (355)
T ss_dssp GGCEEEEEETTTEEEEEET-TSCEEEEEC---CSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCE-
T ss_pred CccEEEEEcCCCCEEEEcC-CCcEEEEcc---CCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCce-
Confidence 4556777778889999999 788888875 2567777776511 11 2 333333 5889999763 2221
Q ss_pred ccccchhhhh----HhhcccceEEEEE--cCC-CC-EEEEeeCCCcEEEEEcCC---CceeeeCCCCCCceeeeccccCC
Q 041325 290 VNKKHSLVQT----LEKHKSAVTALAL--STD-GT-VLYSGACDRSILVWERDQ---GNYIVDGDDDSGHMVLKGALRGH 358 (450)
Q Consensus 290 ~~~~~~~~~~----~~~~~~~i~~l~~--~~~-~~-~l~~g~~dg~i~vwd~~~---~~~~~~~~~~~~~~~~~~~~~~~ 358 (450)
..+.. +......+..+++ +|. ++ ++++...+|.+..|++.. ++. .....+.+..
T Consensus 114 -----~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~---------~~~lVR~f~l- 178 (355)
T 3amr_A 114 -----QSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYI---------SGKKVRAFKM- 178 (355)
T ss_dssp -----EECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCE---------EEEEEEEEEC-
T ss_pred -----eeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcc---------cceEEEEecC-
Confidence 11111 0011145667777 674 43 688888899999999843 211 1112233332
Q ss_pred ccceEEEEEeC--CeEEEEeCCCeEEEeeCCCCccccCCCceeEEEec-CC-CcceEEEEEEecCCCCCCCCCCCCceEE
Q 041325 359 TKAILCLAVVS--NLLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLE-GH-RRPVKCLTAVVDSDYSNRNSDHSSTSFL 434 (450)
Q Consensus 359 ~~~v~~~~~~~--~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~-~h-~~~v~~l~~~~~~~~~~~~~~~~~~~~~ 434 (450)
...+-.+..++ ..|+.+-++..|..++.+... ....+.+..+. ++ ...+..|+.-+... +.+.+
T Consensus 179 gsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~---~~~~~~v~~~~~g~l~aDvEGLai~~~~~---------g~gyL 246 (355)
T 3amr_A 179 NSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDG---GSNGTVIDRADGRHLTRDIEGLTIYYAAD---------GKGYL 246 (355)
T ss_dssp SSCEEEEEEETTTTEEEEEETTTEEEEEECSTTS---CSCCEEEEEBSSSSBCSCEEEEEEEECGG---------GCEEE
T ss_pred CCCcceEEEcCCCCeEEEecccceEEEEeCCcCC---CCCceEEEEecCCccccCcceEEEEecCC---------CCEEE
Confidence 23566777774 489999998666555544210 11124444442 22 24688888854431 11225
Q ss_pred EEEcccCCcEEEEEe
Q 041325 435 VYSGSLDCEIKIWQI 449 (450)
Q Consensus 435 l~s~~~Dg~i~iw~l 449 (450)
++++=.+.+..+||.
T Consensus 247 ivSsQG~~s~~Vydr 261 (355)
T 3amr_A 247 MASSQGNSSYAIYDR 261 (355)
T ss_dssp EEEEGGGTEEEEEES
T ss_pred EEEcCCCCEEEEEEC
Confidence 555557788999986
No 303
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=97.22 E-value=0.086 Score=45.52 Aligned_cols=149 Identities=7% Similarity=0.090 Sum_probs=76.1
Q ss_pred cCCCEEEEEeC-----C------CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC--------CcEEE
Q 041325 220 SDGSLLYSTSW-----D------RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD--------TKIKV 280 (450)
Q Consensus 220 ~~~~~l~~~~~-----d------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d--------g~i~v 280 (450)
.++.+++.|+. . ..+..||..+.+-...-.......-.+++.. ++.+++.|+.+ ..+.+
T Consensus 44 ~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~ 121 (315)
T 4asc_A 44 KENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMC 121 (315)
T ss_dssp TTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEE
T ss_pred ECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEE
Confidence 46777777773 1 1277888887653221111111111223333 55566666632 45888
Q ss_pred EeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC-C-----CcEEEEEcCCCceeeeCCCCCCceeeecc
Q 041325 281 WKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC-D-----RSILVWERDQGNYIVDGDDDSGHMVLKGA 354 (450)
Q Consensus 281 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~-d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 354 (450)
||..+.+.. .+..+.........+. -++++++.|+. + ..+.+||..+.+... ...
T Consensus 122 ~d~~~~~W~------~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~-----------~~~ 182 (315)
T 4asc_A 122 YDRLSFKWG------ESDPLPYVVYGHTVLS--HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKE-----------LAP 182 (315)
T ss_dssp EETTTTEEE------ECCCCSSCCBSCEEEE--ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEE-----------CCC
T ss_pred ECCCCCcEe------ECCCCCCcccceeEEE--ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEE-----------CCC
Confidence 998765422 1212211112222222 26677777776 2 468899988765431 111
Q ss_pred ccCCccceEEEEEeCCeEEEEeCCC-----eEEEeeCCCC
Q 041325 355 LRGHTKAILCLAVVSNLLFSGSSDN-----TIRIWRRSSS 389 (450)
Q Consensus 355 ~~~~~~~v~~~~~~~~~l~s~~~dg-----~v~iwd~~~~ 389 (450)
+......-.++...+.+++.|+.++ .+.+||+.+.
T Consensus 183 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 222 (315)
T 4asc_A 183 MQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDN 222 (315)
T ss_dssp CSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTT
T ss_pred CCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCC
Confidence 1111112233444566667776654 4788888753
No 304
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.19 E-value=0.11 Score=46.15 Aligned_cols=201 Identities=10% Similarity=0.120 Sum_probs=122.3
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc
Q 041325 214 SALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 214 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 293 (450)
.+.-.+|..+.++.-. ..++.++|+++...+..+. ....|.-=.|. ....|+..+ +..|+-|++.... ...+-
T Consensus 69 dsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~--~~e~VvfWkWi--s~~~l~lVT-~taVyHWsi~~~s-~P~kv 141 (494)
T 1bpo_A 69 DSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWI--SLNTVALVT-DNAVYHWSMEGES-QPVKM 141 (494)
T ss_dssp SEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEE--CSSCCCEEEEE--ETTEEEEEC-SSEEEEEESSSSC-CCEEE
T ss_pred ceeeeCCCCcEEEEec-CCeEEEEchHHhhhhccee--cCCCceEEEec--CCCeEEEEc-CCeeEEecccCCC-Cchhh
Confidence 3455778777777665 7899999999999998887 45567776777 344555444 3579999986522 10011
Q ss_pred chhhhhHhhcccceEEEEEcCCCCEEEEee-------CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEE
Q 041325 294 HSLVQTLEKHKSAVTALALSTDGTVLYSGA-------CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLA 366 (450)
Q Consensus 294 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~-------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 366 (450)
......+ ....|..-..+++.++++..+ -.|.+.+|..+.+ ..+.+.+|...-..+.
T Consensus 142 FdR~~~L--~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~--------------~sQ~ieGhaa~F~~~~ 205 (494)
T 1bpo_A 142 FDRHSSL--AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK--------------VSQPIEGHAASFAQFK 205 (494)
T ss_dssp EECCGGG--TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC--------------CEEEECCSEEEEEEEE
T ss_pred eecchhc--ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc--------------ccchheeeeeeeEEEe
Confidence 1111122 246677778888998877543 2477889988754 2356677766655555
Q ss_pred EeCC-----eEEEEeC---CCeEEEeeCCCCc-cccCCCceeEEEe---cCCCcceEEEEEEecCCCCCCCCCCCCceEE
Q 041325 367 VVSN-----LLFSGSS---DNTIRIWRRSSSV-TDHQKGYSCLAVL---EGHRRPVKCLTAVVDSDYSNRNSDHSSTSFL 434 (450)
Q Consensus 367 ~~~~-----~l~s~~~---dg~v~iwd~~~~~-~~~~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~ 434 (450)
..++ +++-+.. .+.+.|-++.... ....-..+.+..+ ..-.+--.++..++... +
T Consensus 206 ~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg-------------v 272 (494)
T 1bpo_A 206 MEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD-------------V 272 (494)
T ss_dssp CTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT-------------E
T ss_pred cCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC-------------E
Confidence 5543 3333333 2789999986431 1111111122211 11233345667777666 7
Q ss_pred EEEcccCCcEEEEEeC
Q 041325 435 VYSGSLDCEIKIWQIR 450 (450)
Q Consensus 435 l~s~~~Dg~i~iw~l~ 450 (450)
+..-..-|.|++||++
T Consensus 273 iyviTK~G~i~lyDle 288 (494)
T 1bpo_A 273 VFLITKYGYIHLYDLE 288 (494)
T ss_dssp EEEEETTSEEEEEETT
T ss_pred EEEEecCceEEEEecc
Confidence 8888889999999974
No 305
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.18 E-value=0.032 Score=47.89 Aligned_cols=146 Identities=8% Similarity=0.174 Sum_probs=76.6
Q ss_pred CCCEEEEEeCC-----CcEEEEecCCCe-----EEEEeecccccceEEEEEeecCCcEEEEEcCC-----CcEEEEeCcc
Q 041325 221 DGSLLYSTSWD-----RTFKIWRTSDFR-----CLESVKNAHDDAINAIVVSKSNDGFVYTGSAD-----TKIKVWKKLR 285 (450)
Q Consensus 221 ~~~~l~~~~~d-----g~i~iwd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~ 285 (450)
++.+++.|+.+ ..+.+||..+.+ .+..+. ....-.+++.. ++.+++.|+.+ ..+.+||+.+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p--~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~ 137 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMN--VRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNI 137 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCS--SCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCC--CCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCC
Confidence 46667777654 468899987755 222222 11122233333 45566676643 3578888876
Q ss_pred hhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC-----CcEEEEEcCCCceeeeCCCCCCceeeeccccCCcc
Q 041325 286 AALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD-----RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTK 360 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (450)
.+... +..+.........+.+ ++++++.|+.+ ..+.+||+.+.+.... ..+.....
T Consensus 138 ~~W~~------~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~-----------~~~p~~r~ 198 (301)
T 2vpj_A 138 DQWSM------LGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNV-----------TPMATKRS 198 (301)
T ss_dssp TEEEE------EEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEE-----------CCCSSCCB
T ss_pred CeEEE------CCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeC-----------CCCCcccc
Confidence 54221 1111111112222223 67777777754 4588999887654321 11111111
Q ss_pred ceEEEEEeCCeEEEEeCC-----CeEEEeeCCCC
Q 041325 361 AILCLAVVSNLLFSGSSD-----NTIRIWRRSSS 389 (450)
Q Consensus 361 ~v~~~~~~~~~l~s~~~d-----g~v~iwd~~~~ 389 (450)
...++.+.+.+++.|+.+ ..+.+||+.+.
T Consensus 199 ~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 232 (301)
T 2vpj_A 199 GAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTD 232 (301)
T ss_dssp SCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred cceEEEECCEEEEEeCCCCCcccceEEEEeCCCC
Confidence 223344455566777664 46889998853
No 306
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.17 E-value=0.0024 Score=62.02 Aligned_cols=155 Identities=12% Similarity=0.020 Sum_probs=87.9
Q ss_pred ceEEEEEccCCCEEEEE-eCCCcEEEEecCC----CeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcch
Q 041325 212 TVSALALSSDGSLLYST-SWDRTFKIWRTSD----FRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRA 286 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~ 286 (450)
.+..++|++.+..|+.+ ...+.|+.+++.. ......+. ........|++.+..+.++++-...+.|.++++...
T Consensus 407 ~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~-~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 407 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCC-SCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred ceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEe-CCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 46678899866555554 4567899999875 22222221 122345667777656666677677788999997643
Q ss_pred hhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC-C-CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEE
Q 041325 287 ALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC-D-RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILC 364 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~-d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 364 (450)
.. ...+.........|+++|.+.+|+.... . +.|.++++...... .+ ....-.....
T Consensus 486 ~~--------~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~----------~l---~~~~l~~PnG 544 (699)
T 1n7d_A 486 KR--------KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY----------SL---VTENIQWPNG 544 (699)
T ss_dssp CE--------EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC----------EE---SCSSCSSCCC
T ss_pred ce--------EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee----------EE---EeCCCCCccE
Confidence 21 1111111234577899986665555443 2 67777776532111 00 0111123456
Q ss_pred EEEeC--C-eEEEEeCCCeEEEeeCCC
Q 041325 365 LAVVS--N-LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 365 ~~~~~--~-~l~s~~~dg~v~iwd~~~ 388 (450)
|++++ . ++++-+..+.|..+++..
T Consensus 545 lavd~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 545 ITLDLLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp EEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred EEEeccCCEEEEEecCCCeEEEEccCC
Confidence 77763 3 555556678899999864
No 307
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.13 E-value=0.015 Score=49.87 Aligned_cols=172 Identities=10% Similarity=0.038 Sum_probs=97.0
Q ss_pred cccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhh------cccceEEEEE---cCCCCEEEEe
Q 041325 252 HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEK------HKSAVTALAL---STDGTVLYSG 322 (450)
Q Consensus 252 ~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~------~~~~i~~l~~---~~~~~~l~~g 322 (450)
......+++|++....++++.-..+.|..||...+... .+ .+.. ....+..|.| .|+++++++.
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~------~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~ 83 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHF------NV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVM 83 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEE------EE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEE
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEE------EE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEE
Confidence 34456778898755545555558999999998643210 11 1111 1124578999 6888777754
Q ss_pred e-------------CCCcEEEEEcC---CCceeeeCCCCCCceeeeccccC-CccceEEEEEe--CCeEEEEeCC-CeEE
Q 041325 323 A-------------CDRSILVWERD---QGNYIVDGDDDSGHMVLKGALRG-HTKAILCLAVV--SNLLFSGSSD-NTIR 382 (450)
Q Consensus 323 ~-------------~dg~i~vwd~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~--~~~l~s~~~d-g~v~ 382 (450)
. .+..|..||+. +++.+............ ....+ -......++.+ |+..++++.. +.|.
T Consensus 84 ~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~-~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~ 162 (334)
T 2p9w_A 84 KNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEF-EKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIA 162 (334)
T ss_dssp EETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHH-HHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEE
T ss_pred cccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccc-cccccccccCCceeEECCCCCEEEeCCCCCCeEE
Confidence 4 26789999998 66654211100000000 00001 11235677776 5677777777 7766
Q ss_pred EeeCCCCccccCCCceeEEE-e--cCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCcEEEEEeC
Q 041325 383 IWRRSSSVTDHQKGYSCLAV-L--EGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 383 iwd~~~~~~~~~~~~~~~~~-~--~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~l~ 450 (450)
..+.... ....... . .......+.|+++|++. +|+....+|.|.-+|++
T Consensus 163 rV~pdG~------~~~~~~~~~~~~~~~~G~nGIv~~pdg~-------------~Liv~~~~g~L~~fD~~ 214 (334)
T 2p9w_A 163 RVSADGK------TVSTFAWESGNGGQRPGYSGITFDPHSN-------------KLIAFGGPRALTAFDVS 214 (334)
T ss_dssp EECTTSC------CEEEEEECCCCSSSCCSCSEEEEETTTT-------------EEEEESSSSSEEEEECS
T ss_pred EEeCCCC------EEeeeeecCCCcccccCcceEEEeCCCC-------------EEEEEcCCCeEEEEcCC
Confidence 6655421 1111110 0 11122367999999998 66666669999888864
No 308
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.91 E-value=0.19 Score=44.16 Aligned_cols=23 Identities=9% Similarity=-0.022 Sum_probs=15.8
Q ss_pred EEeCCEEEEeeCC-CcEEEecCCC
Q 041325 82 AIAGKLLYGGSSN-GEIRAWNRDP 104 (450)
Q Consensus 82 ~~d~~~l~tgs~d-g~v~vw~~~~ 104 (450)
.+++.+++.|+.+ ..+.++|...
T Consensus 17 ~~~~~iyv~GG~~~~~~~~~d~~~ 40 (357)
T 2uvk_A 17 IDNDTVYIGLGSAGTAWYKLDTQA 40 (357)
T ss_dssp EETTEEEEECGGGTTCEEEEETTS
T ss_pred EECCEEEEEeCcCCCeEEEEcccc
Confidence 3477777777654 4688888864
No 309
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=96.91 E-value=0.32 Score=46.54 Aligned_cols=154 Identities=16% Similarity=0.061 Sum_probs=96.5
Q ss_pred ceEEEEEccCCCEE-EEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhc
Q 041325 212 TVSALALSSDGSLL-YSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQV 290 (450)
Q Consensus 212 ~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 290 (450)
.+..++|++....+ ++-..++.|..+++........+. ........+++.+..++++++-...+.|.+.++......
T Consensus 38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~-~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~- 115 (628)
T 4a0p_A 38 EASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVE-FGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQ- 115 (628)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCE-
T ss_pred ceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEe-CCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEE-
Confidence 57889999855554 455567899999987544333333 233457788888766767788788889999997543210
Q ss_pred cccchhhhhHhhcccceEEEEEcCCCCEEEEeeC--CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEe
Q 041325 291 NKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC--DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVV 368 (450)
Q Consensus 291 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 368 (450)
.+ ....-.....|++.|...+|+.... .+.|...++...... .+. ..-.....++++
T Consensus 116 -----~l--~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~----------~l~----~~~~~P~GlalD 174 (628)
T 4a0p_A 116 -----VL--VWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERT----------TLV----PNVGRANGLTID 174 (628)
T ss_dssp -----EE--ECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE----------EEE----CSCSSEEEEEEE
T ss_pred -----EE--EeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceE----------EEE----CCCCCcceEEEc
Confidence 01 1122345689999986556665542 467777777643211 111 123345778887
Q ss_pred C--C-eEEEEeCCCeEEEeeCCC
Q 041325 369 S--N-LLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 369 ~--~-~l~s~~~dg~v~iwd~~~ 388 (450)
. + +.++=...+.|...|+..
T Consensus 175 ~~~~~LY~aD~~~~~I~~~d~dG 197 (628)
T 4a0p_A 175 YAKRRLYWTDLDTNLIESSNMLG 197 (628)
T ss_dssp TTTTEEEEEETTTTEEEEEETTS
T ss_pred cccCEEEEEECCCCEEEEEcCCC
Confidence 3 3 444445667899999874
No 310
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.79 E-value=0.083 Score=45.48 Aligned_cols=148 Identities=11% Similarity=0.133 Sum_probs=75.8
Q ss_pred CCCEEEEEeC----C-----CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC-----CcEEEEeCcch
Q 041325 221 DGSLLYSTSW----D-----RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD-----TKIKVWKKLRA 286 (450)
Q Consensus 221 ~~~~l~~~~~----d-----g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-----g~i~vwd~~~~ 286 (450)
++.+++.|+. + ..+.+||..+.+-...-.......-.+++.. ++.+++.|+.+ ..+.+||..+.
T Consensus 70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~ 147 (308)
T 1zgk_A 70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD 147 (308)
T ss_dssp TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence 4556666654 2 4688899887653222111111111223333 45566666643 35788888765
Q ss_pred hhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC-----CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccc
Q 041325 287 ALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD-----RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA 361 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (450)
+... +..+......-..+.+ ++++++.|+.+ ..+.+||+.+.+.... ..+......
T Consensus 148 ~W~~------~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-----------~~~p~~r~~ 208 (308)
T 1zgk_A 148 EWHL------VAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMI-----------TAMNTIRSG 208 (308)
T ss_dssp EEEE------CCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEC-----------CCCSSCCBS
T ss_pred eEeE------CCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeC-----------CCCCCcccc
Confidence 5321 1111111222222333 67777777754 4588999887654321 111111112
Q ss_pred eEEEEEeCCeEEEEeCC-----CeEEEeeCCCC
Q 041325 362 ILCLAVVSNLLFSGSSD-----NTIRIWRRSSS 389 (450)
Q Consensus 362 v~~~~~~~~~l~s~~~d-----g~v~iwd~~~~ 389 (450)
-.++.+.+.+++.|+.+ ..+.+||+.+.
T Consensus 209 ~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~ 241 (308)
T 1zgk_A 209 AGVCVLHNCIYAAGGYDGQDQLNSVERYDVETE 241 (308)
T ss_dssp CEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred ceEEEECCEEEEEeCCCCCCccceEEEEeCCCC
Confidence 23344455566777654 45889998853
No 311
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.65 E-value=0.26 Score=43.14 Aligned_cols=182 Identities=9% Similarity=0.083 Sum_probs=96.9
Q ss_pred ceEEEEEccCCCEEEEE------------eCCCcEEEEecCC--CeEEEEeec-c-----cccceEEEEEeec--CCcE-
Q 041325 212 TVSALALSSDGSLLYST------------SWDRTFKIWRTSD--FRCLESVKN-A-----HDDAINAIVVSKS--NDGF- 268 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~------------~~dg~i~iwd~~~--~~~~~~~~~-~-----~~~~v~~~~~~~~--~~~~- 268 (450)
...+++..++|..++++ ..+|.|.++|..+ .+. ..+.. + .......+.+.++ +...
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 45567778877555544 1689999999874 222 22221 1 2346777887663 2223
Q ss_pred EEEEcC--CCcEEEEeCcchhhhccccchhhhhHhh-cccceEEEEEcCCCCEEEEeeC-----------------CCcE
Q 041325 269 VYTGSA--DTKIKVWKKLRAALQVNKKHSLVQTLEK-HKSAVTALALSTDGTVLYSGAC-----------------DRSI 328 (450)
Q Consensus 269 l~~~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~g~~-----------------dg~i 328 (450)
+++-.. +..|.+|++.... .....+..+.+ .-...+.+.+.++|.+.++... .|.|
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~----~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~v 205 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEE----KSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFV 205 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTT----TEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEE
T ss_pred EEEECCCCCCeEEEEEEECCC----CEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEE
Confidence 444333 5678888876532 11122223222 1245788999999987776541 2344
Q ss_pred EEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC--e-EEEEeCCCeEEEeeCCCCccccCCCceeEEEecC
Q 041325 329 LVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN--L-LFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEG 405 (450)
Q Consensus 329 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~-l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~ 405 (450)
..+|.. +. ..+...-..-+.++|+++ . .++-+..+.|..|++... ........+.
T Consensus 206 yr~d~~--~~--------------~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~-----g~l~~~~~~~- 263 (355)
T 3sre_A 206 TYYSPN--DV--------------RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN-----WTLTPLRVLS- 263 (355)
T ss_dssp EEECTT--CC--------------EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT-----SCEEEEEEEE-
T ss_pred EEEECC--eE--------------EEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCC-----CcEecCEEEe-
Confidence 444432 10 011111233478888855 4 445556789999998642 1112222221
Q ss_pred CCcceEEEEEEe-cCC
Q 041325 406 HRRPVKCLTAVV-DSD 420 (450)
Q Consensus 406 h~~~v~~l~~~~-~~~ 420 (450)
..+..-.+++.+ +|.
T Consensus 264 ~~g~PDGi~vD~e~G~ 279 (355)
T 3sre_A 264 FDTLVDNISVDPVTGD 279 (355)
T ss_dssp CSSEEEEEEECTTTCC
T ss_pred CCCCCceEEEeCCCCc
Confidence 234556677766 366
No 312
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.64 E-value=0.17 Score=44.95 Aligned_cols=160 Identities=13% Similarity=0.096 Sum_probs=94.0
Q ss_pred EccCCCEEEEEeCCCcEEEEecCCCeEEEEeeccc---ccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccc
Q 041325 218 LSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAH---DDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKH 294 (450)
Q Consensus 218 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 294 (450)
...+|..++.+- ++.||.-++......+.+...+ ...+..+..+|++. +|+..+ +..|.|..+..+........
T Consensus 28 ~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~-lLAl~g-~~~V~Vv~LP~~~~~~~~~~ 104 (452)
T 3pbp_A 28 SSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGD-LLCLFN-DNEIFVMEVPWGYSNVEDVS 104 (452)
T ss_dssp EETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSS-EEEEEC-SSEEEEEECCTTCSCCCCHH
T ss_pred EEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCC-EEEEec-CCeEEEEEecCccccCcccc
Confidence 344666666665 5889988887544444444332 33678899998444 555554 46789988864321111000
Q ss_pred --hhh--hhHh------hcccceEEEEEcC---CCCEEEEeeCCCcEEEEEcCCCcee-eeCCCCCCceeeeccccCCcc
Q 041325 295 --SLV--QTLE------KHKSAVTALALST---DGTVLYSGACDRSILVWERDQGNYI-VDGDDDSGHMVLKGALRGHTK 360 (450)
Q Consensus 295 --~~~--~~~~------~~~~~i~~l~~~~---~~~~l~~g~~dg~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 360 (450)
..+ +.+. ....+|..+.|+| ++..|++-..|+.|++||+...... ..+..... .........
T Consensus 105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~----~fg~d~~~~ 180 (452)
T 3pbp_A 105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNN----SFGLDARVN 180 (452)
T ss_dssp HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCS----EEESCSSCC
T ss_pred cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhcccc----ccCCCcccc
Confidence 000 0111 1257799999999 4568999999999999999862210 01111100 012233446
Q ss_pred ceEEEEEeCC----eEEEEeCCCeEEEe
Q 041325 361 AILCLAVVSN----LLFSGSSDNTIRIW 384 (450)
Q Consensus 361 ~v~~~~~~~~----~l~s~~~dg~v~iw 384 (450)
.|.+++|.++ |+++.+..|-|+-.
T Consensus 181 ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 181 DITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp CEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred eEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 7889999865 45555677887643
No 313
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.60 E-value=0.3 Score=42.10 Aligned_cols=150 Identities=7% Similarity=0.134 Sum_probs=73.3
Q ss_pred ccCCCEEEEEeC----CC-------cEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCC-------CcEEE
Q 041325 219 SSDGSLLYSTSW----DR-------TFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSAD-------TKIKV 280 (450)
Q Consensus 219 ~~~~~~l~~~~~----dg-------~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d-------g~i~v 280 (450)
..++.+++.|+. ++ .+..||..+.+-...-.......-.+++.. ++.+++.|+.+ ..+.+
T Consensus 54 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~ 131 (318)
T 2woz_A 54 TQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLC 131 (318)
T ss_dssp CSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEE
T ss_pred EECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEE
Confidence 345677777762 11 277888877653322111111122233333 45566666653 34778
Q ss_pred EeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC------CCcEEEEEcCCCceeeeCCCCCCceeeecc
Q 041325 281 WKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC------DRSILVWERDQGNYIVDGDDDSGHMVLKGA 354 (450)
Q Consensus 281 wd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 354 (450)
||..+.+... +..+......-..+. .++++++.|+. -..+.+||..+.+.... ..
T Consensus 132 yd~~~~~W~~------~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~-----------~~ 192 (318)
T 2woz_A 132 YDPVAAKWSE------VKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDL-----------AP 192 (318)
T ss_dssp EETTTTEEEE------ECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEE-----------CC
T ss_pred EeCCCCCEeE------CCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEEC-----------CC
Confidence 8887654221 111111111112222 36777777764 23589999987654321 11
Q ss_pred ccCCccceEEEEEeCCeEEEEeCC-----CeEEEeeCCCC
Q 041325 355 LRGHTKAILCLAVVSNLLFSGSSD-----NTIRIWRRSSS 389 (450)
Q Consensus 355 ~~~~~~~v~~~~~~~~~l~s~~~d-----g~v~iwd~~~~ 389 (450)
+......-.++...+.+++.|+.+ ..+.+||+.+.
T Consensus 193 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 232 (318)
T 2woz_A 193 MKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTN 232 (318)
T ss_dssp CSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTC
T ss_pred CCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCC
Confidence 111111123334455566666643 34678888753
No 314
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.51 E-value=0.35 Score=41.66 Aligned_cols=109 Identities=13% Similarity=0.122 Sum_probs=58.0
Q ss_pred CCCEEEEEeCC--------CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcC-C-----CcEEEEeCcch
Q 041325 221 DGSLLYSTSWD--------RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSA-D-----TKIKVWKKLRA 286 (450)
Q Consensus 221 ~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-d-----g~i~vwd~~~~ 286 (450)
++.+++.|+.+ ..+.+||..+.+-...-.......-.+++.. ++.+++.|+. + ..+.+||..+.
T Consensus 98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~ 175 (315)
T 4asc_A 98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH--MDLVYVIGGKGSDRKCLNKMCVYDPKKF 175 (315)
T ss_dssp TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCTTSCBCCCEEEEETTTT
T ss_pred CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEE--CCEEEEEeCCCCCCcccceEEEEeCCCC
Confidence 45666666632 4588899987653221111111122223333 5557777765 2 46888998765
Q ss_pred hhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCC-----cEEEEEcCCCcee
Q 041325 287 ALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDR-----SILVWERDQGNYI 339 (450)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg-----~i~vwd~~~~~~~ 339 (450)
+.. .+..+.........+.+ ++++++.|+.++ .+.+||+.+.+..
T Consensus 176 ~W~------~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 225 (315)
T 4asc_A 176 EWK------ELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWA 225 (315)
T ss_dssp EEE------ECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEE
T ss_pred eEE------ECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEE
Confidence 532 12222111122222333 677788887654 4888998876543
No 315
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=96.49 E-value=0.62 Score=44.45 Aligned_cols=200 Identities=15% Similarity=0.141 Sum_probs=110.9
Q ss_pred cceEEEEEe--CC-EEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC--CeEE-EEeCCCeE
Q 041325 76 SYIPSLAIA--GK-LLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG--DKLF-SAHQDHKI 149 (450)
Q Consensus 76 ~~v~~~~~d--~~-~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~--~~l~-s~~~dg~i 149 (450)
.....|+|+ +. ++++=...+.|..++++....... .....-.....|++.. +.|+ +-...+.|
T Consensus 40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~-----------v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I 108 (619)
T 3s94_A 40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN-----------VVVSGLLSPDGLACDWLGEKLYWTDSETNRI 108 (619)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEE-----------EECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEE-----------EEeCCCCCcCeEEEEecCCEEEEEeCCCCEE
Confidence 446677773 44 444444567788888765431111 1222224677888874 3344 44556888
Q ss_pred EEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe
Q 041325 150 RVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS 229 (450)
Q Consensus 150 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 229 (450)
.+.+++........ ...-.....|+++|.+..|+...
T Consensus 109 ~v~~~dG~~~~~l~-------------------------------------------~~~l~~P~~Iavdp~~g~ly~tD 145 (619)
T 3s94_A 109 EVSNLDGSLRKVLF-------------------------------------------WQELDQPRAIALDPSSGFMYWTD 145 (619)
T ss_dssp EEEETTSCSCEEEE-------------------------------------------CSSCSCCCCEEEETTTTEEEEEE
T ss_pred EEEECCCCCEEEEE-------------------------------------------eCCCCCCceEEEecCCCeEEEec
Confidence 88888765211000 01222467889998655555444
Q ss_pred C--CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccce
Q 041325 230 W--DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAV 307 (450)
Q Consensus 230 ~--dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i 307 (450)
. .+.|...++.... ...+........+.|++.+..+.+.++-...+.|..+|+..... ..... +.....
T Consensus 146 ~g~~~~I~r~~~dG~~-~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~-----~~~~~---~~~~~P 216 (619)
T 3s94_A 146 WGEVPKIERAGMDGSS-RFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-----QAVVK---GSLPHP 216 (619)
T ss_dssp CSSSCEEEEEETTSCS-CEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEE-----C------------C
T ss_pred cCCCCEEEEEECCCCc-eEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCcc-----EEEEe---CCCCCc
Confidence 3 4567777765332 22232133456789999986676777777788899999865331 01111 112223
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEEcCCCcee
Q 041325 308 TALALSTDGTVLYSGACDRSILVWERDQGNYI 339 (450)
Q Consensus 308 ~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~ 339 (450)
..|++..+ .+.++-...+.|...|..+++..
T Consensus 217 ~gi~~~~~-~ly~td~~~~~V~~~d~~tg~~~ 247 (619)
T 3s94_A 217 FALTLFED-ILYWTDWSTHSILACNKYTGEGL 247 (619)
T ss_dssp CCEEESSS-EEEEECTTTCSEEEEESSSCCCC
T ss_pred eEEEEeCC-EEEEecCCCCEEEEEECCCCccc
Confidence 56777654 44445456788999998877644
No 316
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.37 E-value=0.34 Score=50.02 Aligned_cols=196 Identities=10% Similarity=0.134 Sum_probs=112.8
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccc
Q 041325 215 ALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKH 294 (450)
Q Consensus 215 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 294 (450)
+.-.+|..+.++.-. ..++.|+|+++...+..+. ....|.-=.|. ....|+..+. ..|..|++....
T Consensus 70 sAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~--~~e~VvfWkWi--s~~~l~lVT~-~aVyHW~~~~~s------- 136 (1630)
T 1xi4_A 70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWI--SLNTVALVTD-NAVYHWSMEGES------- 136 (1630)
T ss_pred hhccCCCcceEEEec-CCeEEEeehHHhhhhcccc--cCCCceEEEec--CCCeeEEEcC-CeEEEeccCCCC-------
Confidence 445677777666654 7899999999988888776 44566666666 4445444443 569999995421
Q ss_pred hhhhhHhhc----ccceEEEEEcCCCCEEEEee-------CCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceE
Q 041325 295 SLVQTLEKH----KSAVTALALSTDGTVLYSGA-------CDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAIL 363 (450)
Q Consensus 295 ~~~~~~~~~----~~~i~~l~~~~~~~~l~~g~-------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 363 (450)
.+.+.+..| ...|..-..+++.++++..+ ..|.+.+|..+.+. .+.+.||...-.
T Consensus 137 ~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~--------------sQ~iegha~~F~ 202 (1630)
T 1xi4_A 137 QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV--------------SQPIEGHAASFA 202 (1630)
T ss_pred ccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc--------------chhhhHhHhhhh
Confidence 244444444 45677777888888877543 35788888887542 244555554444
Q ss_pred EEEEeCC-----eEEEEeC---CCeEEEeeCCCC-ccccCCCceeEEEe---cCCCcceEEEEEEecCCCCCCCCCCCCc
Q 041325 364 CLAVVSN-----LLFSGSS---DNTIRIWRRSSS-VTDHQKGYSCLAVL---EGHRRPVKCLTAVVDSDYSNRNSDHSST 431 (450)
Q Consensus 364 ~~~~~~~-----~l~s~~~---dg~v~iwd~~~~-~~~~~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~~~~~~~~~~ 431 (450)
.+...++ +++.+.. .+.+.|-++... .....-..+.+..+ ..-..-..++..++...
T Consensus 203 ~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g----------- 271 (1630)
T 1xi4_A 203 QFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD----------- 271 (1630)
T ss_pred eeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccC-----------
Confidence 4433322 2221111 268888888643 10000000111111 11122233445555544
Q ss_pred eEEEEEcccCCcEEEEEeC
Q 041325 432 SFLVYSGSLDCEIKIWQIR 450 (450)
Q Consensus 432 ~~~l~s~~~Dg~i~iw~l~ 450 (450)
++..-+.-|.|+++|+.
T Consensus 272 --~iy~itk~G~~~~~d~~ 288 (1630)
T 1xi4_A 272 --VVFLITKYGYIHLYDLE 288 (1630)
T ss_pred --EEEEEecCceEEEEecc
Confidence 67777788999999873
No 317
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.017 Score=50.09 Aligned_cols=127 Identities=8% Similarity=0.036 Sum_probs=69.4
Q ss_pred CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEE--eCCCeEEEEEcCCCceeEE
Q 041325 85 GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSA--HQDHKIRVWKIDNNTSAYY 162 (450)
Q Consensus 85 ~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~--~~dg~i~iw~~~~~~~~~~ 162 (450)
+.+++.++.||.|.-.|.++++........ ...+.+...+.... ..+.++.+ ..||.|..++..++.....
T Consensus 10 ~~~V~v~t~dG~l~Ald~~tG~~~W~~~~~-~~~p~~~~~~~~~~------~~~~~~vv~p~~dG~l~a~~~~~G~~~~~ 82 (339)
T 2be1_A 10 SDILIAADVEGGLHAVDRRNGHIIWSIEPE-NFQPLIEIQEPSRL------ETYETLIIEPFGDGNIYYFNAHQGLQKLP 82 (339)
T ss_dssp EEEEEEEETTSCEEEEETTTTEEEEEECGG-GSCCSEECCCSCTT------TSSEEEEECCSTTTEEEEEETTTEEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEecCC-ccCCcEEecCCccc------cCCcEEEEEECCCCEEEEEECCCCcEEee
Confidence 557889999999999999999987775443 00111111111110 12234444 5799999999877632111
Q ss_pred eccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceE-EEEEccCCCEEEEEeCCCcEEEEecCC
Q 041325 163 STSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVS-ALALSSDGSLLYSTSWDRTFKIWRTSD 241 (450)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~ 241 (450)
..... +.. ...+.....+|. ..--...+..+++|+.+|.+...|+.+
T Consensus 83 ~~~~~-----------lv~---------------------~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~t 130 (339)
T 2be1_A 83 LSIRQ-----------LVS---------------------TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLN 130 (339)
T ss_dssp EEHHH-----------HHT---------------------TCSEEEECC----------CCEEEEECEEEEEEEEEETTT
T ss_pred ecccc-----------cee---------------------ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCC
Confidence 10000 000 000000001110 000001355788999999999999999
Q ss_pred CeEEEEeec
Q 041325 242 FRCLESVKN 250 (450)
Q Consensus 242 ~~~~~~~~~ 250 (450)
|+.+..+..
T Consensus 131 G~~~W~~~~ 139 (339)
T 2be1_A 131 GEIISAFGP 139 (339)
T ss_dssp CCEEEEEST
T ss_pred CcEEEEEec
Confidence 999998873
No 318
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.30 E-value=0.057 Score=47.85 Aligned_cols=119 Identities=15% Similarity=0.119 Sum_probs=79.3
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCe------------EEEEeecc-----cccceEEEEEeecCCc--EEEEE
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFR------------CLESVKNA-----HDDAINAIVVSKSNDG--FVYTG 272 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------------~~~~~~~~-----~~~~v~~~~~~~~~~~--~l~~~ 272 (450)
.+..+..+|+|++||..+ +..|.|-.+..+. ..+.+..+ ...+|..+.|+|.... .|++-
T Consensus 67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL 145 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL 145 (452)
T ss_dssp TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence 467799999999999887 5688888887321 11223211 2467999999986544 79999
Q ss_pred cCCCcEEEEeCcchhhhccccchhh---hhHhhcccceEEEEEcCCCCEEEEee--CCCcEEEEE
Q 041325 273 SADTKIKVWKKLRAALQVNKKHSLV---QTLEKHKSAVTALALSTDGTVLYSGA--CDRSILVWE 332 (450)
Q Consensus 273 ~~dg~i~vwd~~~~~~~~~~~~~~~---~~~~~~~~~i~~l~~~~~~~~l~~g~--~dg~i~vwd 332 (450)
..|+.|++||+........ ..... ..+......|.+++|.+++-.|...+ .+|.|+-.-
T Consensus 146 tsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 146 KEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp ETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred ecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 9999999999986331110 00000 01112236789999999887777754 788887643
No 319
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=96.22 E-value=0.62 Score=41.57 Aligned_cols=169 Identities=14% Similarity=0.165 Sum_probs=90.7
Q ss_pred eEEEEEccCCCEEEEEeCCCcEEEEecCCC-----------eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEE
Q 041325 213 VSALALSSDGSLLYSTSWDRTFKIWRTSDF-----------RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVW 281 (450)
Q Consensus 213 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw 281 (450)
+..++++.-....+.-..||.|..|-.... .....+.......|..|+.- ....++-..+|.|..|
T Consensus 107 ~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G---~~hs~alt~~G~v~~w 183 (389)
T 3kci_A 107 IKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG---GAHSACVTAAGDLYTW 183 (389)
T ss_dssp EEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC---SSEEEEEETTSCEEEE
T ss_pred eeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC---cCeEEEEeCCCeEEEe
Confidence 444566555566666677888888854321 11122221122356666653 4466666789999999
Q ss_pred eCcch-hhhcc-----ccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccc
Q 041325 282 KKLRA-ALQVN-----KKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGAL 355 (450)
Q Consensus 282 d~~~~-~~~~~-----~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 355 (450)
-.... ++... .....+..+ ....|..++......+.++-..||.|+.|-....-.+-.... .....+....
T Consensus 184 G~n~~GqLG~~~~~~~~~p~~v~~~--~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~-~~~~~p~~v~ 260 (389)
T 3kci_A 184 GKGRYGRLGHSDSEDQLKPKLVEAL--QGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGS-DGCKVPMKID 260 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGG--TTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSC-CCEEEEEECG
T ss_pred CCCCCCCcCCCCCcccccceEeccc--CCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCC-CCccccEEec
Confidence 75432 11000 011111122 234566777654335666777899999997653221110000 0111111111
Q ss_pred cCCccceEEEEEeCCeEEEEeCCCeEEEeeCC
Q 041325 356 RGHTKAILCLAVVSNLLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 356 ~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~ 387 (450)
......|..++....+.+.-..||.|+.|=..
T Consensus 261 ~~~~~~v~~v~~G~~hs~alt~~G~v~~wG~n 292 (389)
T 3kci_A 261 SLTGLGVVKVECGSQFSVALTKSGAVYTWGKG 292 (389)
T ss_dssp GGTTSCEEEEEEETTEEEEEETTSCEEEEECC
T ss_pred ccCCCcEEEEeCCCCEEEEEeCCCeEEEEeCC
Confidence 11223577888777777777899999999654
No 320
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.22 E-value=0.51 Score=40.63 Aligned_cols=109 Identities=8% Similarity=0.144 Sum_probs=56.3
Q ss_pred CCCEEEEEeCC-------CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcC------CCcEEEEeCcchh
Q 041325 221 DGSLLYSTSWD-------RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSA------DTKIKVWKKLRAA 287 (450)
Q Consensus 221 ~~~~l~~~~~d-------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~------dg~i~vwd~~~~~ 287 (450)
++.+++.|+.+ ..+.+||..+.+-...-.......-.+++.. ++.+++.|+. -..+.+||+.+.+
T Consensus 109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~ 186 (318)
T 2woz_A 109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISH--NGMIYCLGGKTDDKKCTNRVFIYNPKKGD 186 (318)
T ss_dssp TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEE--TTEEEEECCEESSSCBCCCEEEEETTTTE
T ss_pred CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEE--CCEEEEEcCCCCCCCccceEEEEcCCCCE
Confidence 56667777653 3578888887653322111111111222232 5556666654 2358899987765
Q ss_pred hhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCC-----CcEEEEEcCCCcee
Q 041325 288 LQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACD-----RSILVWERDQGNYI 339 (450)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d-----g~i~vwd~~~~~~~ 339 (450)
... +..+.........+.+ ++++++.|+.+ ..+.+||+.+.+..
T Consensus 187 W~~------~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 235 (318)
T 2woz_A 187 WKD------LAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWE 235 (318)
T ss_dssp EEE------ECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEE
T ss_pred EEE------CCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEE
Confidence 321 1111111122222333 66777777653 34778888876543
No 321
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=96.16 E-value=0.78 Score=42.09 Aligned_cols=171 Identities=6% Similarity=0.046 Sum_probs=89.9
Q ss_pred ceEEEEEcc-C-CCEEEEEeCCCcEEEEecCCCeEEEEeecc--cccceEEEEE-------eecCCcEEEEEcCCC----
Q 041325 212 TVSALALSS-D-GSLLYSTSWDRTFKIWRTSDFRCLESVKNA--HDDAINAIVV-------SKSNDGFVYTGSADT---- 276 (450)
Q Consensus 212 ~v~~~~~~~-~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~~~~v~~~~~-------~~~~~~~l~~~~~dg---- 276 (450)
....|+|+| + ++++++-...+.|++.|+.++......... .......++| .+.++.++++...++
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~ 219 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE 219 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence 467899998 3 444444444578999999887766554421 1235889999 875553444444432
Q ss_pred --cEEEEeCcc-hhhhccccchhhhhHhhcccceEEEEEcCC-CCEEEEeeCCCcEEEEEcC-------CCceeeeC-CC
Q 041325 277 --KIKVWKKLR-AALQVNKKHSLVQTLEKHKSAVTALALSTD-GTVLYSGACDRSILVWERD-------QGNYIVDG-DD 344 (450)
Q Consensus 277 --~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~-~~~l~~g~~dg~i~vwd~~-------~~~~~~~~-~~ 344 (450)
.|.+++... +........ ..+.. -.....++++|+ +.++++-..++.|..+|+. ++..-... ..
T Consensus 220 ~~~V~~i~r~~~G~~~~~~~~---~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~ 295 (496)
T 3kya_A 220 SPSVYIIKRNADGTFDDRSDI---QLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKN 295 (496)
T ss_dssp EEEEEEEECCTTSCCSTTSCE---EEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGG
T ss_pred CceEEEEecCCCCceeecccc---eeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccc
Confidence 255665322 111000000 11111 234567889994 5555566678889999997 44420000 00
Q ss_pred CCCceeeeccccCCccceEEEEEeC--Ce-EEEEeCCCeEEEeeCC
Q 041325 345 DSGHMVLKGALRGHTKAILCLAVVS--NL-LFSGSSDNTIRIWRRS 387 (450)
Q Consensus 345 ~~~~~~~~~~~~~~~~~v~~~~~~~--~~-l~s~~~dg~v~iwd~~ 387 (450)
........... +....-..+++++ ++ +++-.....|+.++..
T Consensus 296 ~~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d 340 (496)
T 3kya_A 296 NPNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD 340 (496)
T ss_dssp CTTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred cccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence 00000000111 1223446788874 44 4455567788886654
No 322
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=96.03 E-value=0.78 Score=40.94 Aligned_cols=200 Identities=11% Similarity=0.134 Sum_probs=107.0
Q ss_pred CEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEe-CCeEEEEeCCCeEEEEEcCCCceeEEec
Q 041325 86 KLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVL-GDKLFSAHQDHKIRVWKIDNNTSAYYST 164 (450)
Q Consensus 86 ~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~-~~~l~s~~~dg~i~iw~~~~~~~~~~~~ 164 (450)
+.||-=. ..++.|+|+++...+.... - ...|.-=.|- ++.|+-.+ +..|.-|+++.....
T Consensus 78 ~iiALra-g~~lQiFnle~K~klks~~------------~-~e~VvfWkWis~~~l~lVT-~taVyHWsi~~~s~P---- 138 (494)
T 1bpo_A 78 KVIALKA-GKTLQIFNIEMKSKMKAHT------------M-TDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQP---- 138 (494)
T ss_dssp SCEEEEE-TTEEEEEETTTTEEEEEEE------------C-SSCCCEEEEEETTEEEEEC-SSEEEEEESSSSCCC----
T ss_pred cEEEEec-CCeEEEEchHHhhhhccee------------c-CCCceEEEecCCCeEEEEc-CCeeEEecccCCCCc----
Confidence 3444333 4678888888877555422 1 2356666665 44444443 356888888653210
Q ss_pred cCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe-------CCCcEEEE
Q 041325 165 SGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS-------WDRTFKIW 237 (450)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~dg~i~iw 237 (450)
.+.+.+...+ ....|..-..+++.++++..+ -.|.+.+|
T Consensus 139 -----~kvFdR~~~L-----------------------------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLY 184 (494)
T 1bpo_A 139 -----VKMFDRHSSL-----------------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLY 184 (494)
T ss_dssp -----EEEEECCGGG-----------------------------TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEE
T ss_pred -----hhheecchhc-----------------------------ccceEEEEEECCCCCeEEEEeecccCCcccceEEEe
Confidence 0000110010 123455556677777766443 24778999
Q ss_pred ecCCCeEEEEeecccccceEEEEEeec--CCcEEEEEcC---CCcEEEEeCcch-hhhccccchhhh---hHhhcccceE
Q 041325 238 RTSDFRCLESVKNAHDDAINAIVVSKS--NDGFVYTGSA---DTKIKVWKKLRA-ALQVNKKHSLVQ---TLEKHKSAVT 308 (450)
Q Consensus 238 d~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~---dg~i~vwd~~~~-~~~~~~~~~~~~---~~~~~~~~i~ 308 (450)
..+.+. .+.+. +|...-..+..... ...+++.+.. .+.+++.++... .-...-..+.+. .-+...+-..
T Consensus 185 S~er~~-sQ~ie-Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPv 262 (494)
T 1bpo_A 185 SVDRKV-SQPIE-GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPV 262 (494)
T ss_dssp ESTTCC-EEEEC-CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEE
T ss_pred eccccc-cchhe-eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCcee
Confidence 987543 23333 55444333332210 1113333333 278999998543 100000000000 0112234456
Q ss_pred EEEEcCCCCEEEEeeCCCcEEEEEcCCCceee
Q 041325 309 ALALSTDGTVLYSGACDRSILVWERDQGNYIV 340 (450)
Q Consensus 309 ~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~ 340 (450)
++..++.-..++.-+.-|.|++||+.++.+++
T Consensus 263 amqvs~kygviyviTK~G~i~lyDleTgt~i~ 294 (494)
T 1bpo_A 263 AMQISEKHDVVFLITKYGYIHLYDLETGTCIY 294 (494)
T ss_dssp EEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEecccCCEEEEEecCceEEEEecccceeee
Confidence 78888888889999999999999999999873
No 323
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=95.85 E-value=2 Score=44.29 Aligned_cols=271 Identities=11% Similarity=0.098 Sum_probs=140.6
Q ss_pred EEEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeC------CeEEEEe---CCCe
Q 041325 79 PSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLG------DKLFSAH---QDHK 148 (450)
Q Consensus 79 ~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~------~~l~s~~---~dg~ 148 (450)
.|+++ ++.+|+.|+..|.=.+|.+...... .......+.-...-++|.+++... ..+++++ .+|.
T Consensus 330 ssl~~l~~g~lFvgS~~Gds~l~~~~~~~~~-----~~~~~~~~~~~~N~~PI~D~~v~d~~~~~~~~i~~~sG~g~~gs 404 (1158)
T 3ei3_A 330 ECLTYLDNGVVFVGSRLGDSQLVKLNVDSNE-----QGSYVVAMETFTNLGPIVDMCVVDLERQGQGQLVTCSGAFKEGS 404 (1158)
T ss_dssp SEEEECSTTEEEEECSSSCEEEEEECSSCCT-----TSCCEEEEEEECCCCSEEEEEEECTTSSSCCEEEEEECCGGGCE
T ss_pred cEEEEECCCEEEEEEecCCcEEEEEecCCCC-----ccceEEeEeeecCcCCceeEEEEccCCCCCCeEEEEECcCCCCe
Confidence 55666 6779999999888777776543210 000001112234456888888752 2355443 4688
Q ss_pred EEEEEcCCCceeEEeccCcccccceeeeeeccCC----CcceeEeeecCceEEEe--ecceeeeecCCCceEEEEEccCC
Q 041325 149 IRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTL----NDRFTKCFLANNYVQVR--RHKKCTWVHHVDTVSALALSSDG 222 (450)
Q Consensus 149 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~ 222 (450)
+++..-.-+....... ..+ ....+.++... .+.+.++...+....+. ....... . .-.|..+.
T Consensus 405 L~~lr~Gi~~~~~~~~--~l~--gv~~iWtl~~~~~~~~~~yLvlS~~~~T~Vl~i~~e~veev-~------~~gf~~~~ 473 (1158)
T 3ei3_A 405 LRIIRNGIGIHEHASI--DLP--GIKGLWPLRSDPNRETDDTLVLSFVGQTRVLMLNGEEVEET-E------LMGFVDDQ 473 (1158)
T ss_dssp EEEEEESBCEEEEEEE--CCC--SCCEEEEECCCSSCSSCCEEEEEETTEEEEEEEETTEEEEE-C------CTTCCSSS
T ss_pred EEEEecCCCEEEEEee--cCC--CccEEEEEeecCCCCCCCEEEEECCCCeEEEEEeCCccccc-c------cccccCCC
Confidence 8887654432221111 111 11334444321 23333333333332221 1111111 0 00122233
Q ss_pred CEEEEEeC---------CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc
Q 041325 223 SLLYSTSW---------DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 223 ~~l~~~~~---------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 293 (450)
..|+++.. ...|++.+......+..+.......|...+.+ +. .++.+. ++.+.++++..++...
T Consensus 474 ~TL~~~~l~~~~ivQVt~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~-~vvva~-g~~l~~fel~~~~L~~--- 546 (1158)
T 3ei3_A 474 QTFFCGNVAHQQLIQITSASVRLVSQEPKALVSEWKEPQAKNISVASCN--SS-QVVVAV-GRALYYLQIHPQELRQ--- 546 (1158)
T ss_dssp CEEEEEEETTTEEEEEESSCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SS-EEEEEE-TTEEEEEEEETTEEEE---
T ss_pred CcEEEEEcCCCeEEEEecCEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CC-EEEEEE-CCEEEEEEeeCCceee---
Confidence 33333321 34577777766566666664445567777765 33 555554 5788888776543111
Q ss_pred chhhhhHhhcccceEEEEEcCC------CCEEEEeeC-CCcEEEEEcCCCceeeeCCCCCCceeeeccccC--CccceEE
Q 041325 294 HSLVQTLEKHKSAVTALALSTD------GTVLYSGAC-DRSILVWERDQGNYIVDGDDDSGHMVLKGALRG--HTKAILC 364 (450)
Q Consensus 294 ~~~~~~~~~~~~~i~~l~~~~~------~~~l~~g~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~ 364 (450)
... ......|.|+++.|. ++++++|.. |++|+|+++.+.+.+. ...+.. -...+.-
T Consensus 547 ---~~~-~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~-----------~~~L~~~~~p~si~l 611 (1158)
T 3ei3_A 547 ---ISH-TEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLH-----------KEMLGGEIIPRSILM 611 (1158)
T ss_dssp ---EEE-EECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEE-----------EEECCSSCCEEEEEE
T ss_pred ---ecc-cCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEE-----------EEECCCCCCCcEEEE
Confidence 111 123567999999763 479999996 9999999998765442 112211 1112222
Q ss_pred EEEeC-CeEEEEeCCCeEEEeeCC
Q 041325 365 LAVVS-NLLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 365 ~~~~~-~~l~s~~~dg~v~iwd~~ 387 (450)
+.+.+ .+|..|-.||.+.-+.+.
T Consensus 612 ~~~~~~~~L~igl~dG~l~~~~~d 635 (1158)
T 3ei3_A 612 TTFESSHYLLCALGDGALFYFGLN 635 (1158)
T ss_dssp EEETTEEEEEEEETTSEEEEEEEC
T ss_pred EEeCCCcEEEEEeCCCeEEEEEEc
Confidence 22323 388899999998666554
No 324
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=95.71 E-value=0.85 Score=38.97 Aligned_cols=201 Identities=10% Similarity=0.128 Sum_probs=108.1
Q ss_pred CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEEEcCCCceeEEe
Q 041325 85 GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVWKIDNNTSAYYS 163 (450)
Q Consensus 85 ~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~~~~~~~~~~~ 163 (450)
.+.||-=. ..++.|+|+++.+.+.... - ...|.-=.|-.+. |+-.+ +..|.-|+++......
T Consensus 78 ~~ViALra-g~~LQiFnletK~klks~~------------~-~e~VvfWkWis~~~L~lVT-~taVyHWs~~~~s~P~-- 140 (365)
T 2xzh_A 78 SKVIALKA-GKTLQIFNIEMKSKMKAHT------------M-TDDVTFWKWISLNTVALVT-DNAVYHWSMEGESQPV-- 140 (365)
T ss_dssp SSEEEEEE-TTEEEEEETTTTEEEEEEE------------C-SSCEEEEEECSSSEEEEEE-SSEEEEEESSTTCCCE--
T ss_pred ccEEEEec-CCeEEEechHHhhhhccee------------c-CCccEEEEecCCCeEEEEc-CCcEEEEcccCCCCCc--
Confidence 44555444 4789999999887665522 1 2467777776444 44433 3579999987642100
Q ss_pred ccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEe-------CCCcEEE
Q 041325 164 TSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTS-------WDRTFKI 236 (450)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-------~dg~i~i 236 (450)
+.+.+...+ ....|..-..+++.++++..+ -.|.+.+
T Consensus 141 -------kvFdR~~~L-----------------------------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQL 184 (365)
T 2xzh_A 141 -------KMFDRHSSL-----------------------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQL 184 (365)
T ss_dssp -------EEEECCGGG-----------------------------TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEE
T ss_pred -------eeeecchhc-----------------------------ccceEEEEEECCCCCEEEEEeEeccCCccceeEEE
Confidence 000111111 122455555666777665543 1377899
Q ss_pred EecCCCeEEEEeecccccceEEEEEe--ecCCcEEEEEcC---CCcEEEEeCcch-hhhccccchhh---hhHhhcccce
Q 041325 237 WRTSDFRCLESVKNAHDDAINAIVVS--KSNDGFVYTGSA---DTKIKVWKKLRA-ALQVNKKHSLV---QTLEKHKSAV 307 (450)
Q Consensus 237 wd~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~~~---dg~i~vwd~~~~-~~~~~~~~~~~---~~~~~~~~~i 307 (450)
|..+.+. .+.+. +|...-..+... +....+++.+.. .+.+++.++... .-...-..+.+ ..-+...+-.
T Consensus 185 YS~er~~-sQ~ie-Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFP 262 (365)
T 2xzh_A 185 YSVDRKV-SQPIE-GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP 262 (365)
T ss_dssp EETTTTE-EEEEC-CSEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCE
T ss_pred Eeecccc-cceee-eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCce
Confidence 9987653 23333 454333222221 101112222222 258899988543 10000000000 0011223445
Q ss_pred EEEEEcCCCCEEEEeeCCCcEEEEEcCCCceee
Q 041325 308 TALALSTDGTVLYSGACDRSILVWERDQGNYIV 340 (450)
Q Consensus 308 ~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~ 340 (450)
.++..++.-..++.-+.-|.|++||+.++.+++
T Consensus 263 Vamqvs~kygviyviTK~G~ihlyDleTgt~i~ 295 (365)
T 2xzh_A 263 VAMQISEKHDVVFLITKYGYIHLYDLETGTCIY 295 (365)
T ss_dssp EEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred EEEEecccCCEEEEEeCCcEEEEEEcccCcEEE
Confidence 678888877889999999999999999998873
No 325
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=95.64 E-value=0.86 Score=38.47 Aligned_cols=144 Identities=15% Similarity=0.137 Sum_probs=77.8
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcc
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVN 291 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~ 291 (450)
.|..++...+.. ++. . ||.|..|-....-.+.. .......|..++.. .. +.+.-. ||.|..|-......
T Consensus 64 ~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~-P~~~~~~v~~ia~G--~~-hs~al~-~G~v~~wG~n~~gq--- 132 (282)
T 3qhy_B 64 GVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTV-PAEARSGVDAIAAG--AW-ASYALK-DGKVIAWGDDSDGQ--- 132 (282)
T ss_dssp CCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCC-CGGGSSSEEEEEEE--TT-EEEEEE-TTEEEEEECCTTST---
T ss_pred CEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCC-CcccCCCeEEEECc--CC-EEEEEe-CCeEEEecCCCCCc---
Confidence 455565543332 333 4 88888887654322211 11223467777775 34 433334 99999997643220
Q ss_pred ccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCe
Q 041325 292 KKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNL 371 (450)
Q Consensus 292 ~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 371 (450)
+.........|..++...+ ..+.-. ||.|+.|-....-.+ ..... -...|..++-...+
T Consensus 133 -----lg~~~~~~~~i~~i~~G~~--~~~~l~-~G~v~~wG~n~~gql----------g~p~~---~~~~v~~i~~G~~h 191 (282)
T 3qhy_B 133 -----TTVPAEAQSGVTALDGGVY--TALAVK-NGGVIAWGDNYFGQT----------TVPAE---AQSGVDDVAGGIFH 191 (282)
T ss_dssp -----TSCCGGGGSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTT----------SCCGG---GGSSEEEEEECSSE
T ss_pred -----CCCCccCCCCeEEEEcccC--EEEEEE-CCEEEEecCCCCCCC----------CCcee---cCCCeEEEEecCCE
Confidence 0001112345777776533 333334 799999987643211 00011 13467788777665
Q ss_pred EEEEeCCCeEEEeeCCC
Q 041325 372 LFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 372 l~s~~~dg~v~iwd~~~ 388 (450)
.+.- .||.|+.|=...
T Consensus 192 s~al-~~G~v~~wG~n~ 207 (282)
T 3qhy_B 192 SLAL-KDGKVIAWGDNR 207 (282)
T ss_dssp EEEE-ETTEEEEEECCT
T ss_pred EEEE-ECCeEEEEECCC
Confidence 4445 699999997654
No 326
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=95.58 E-value=1.1 Score=39.30 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=21.5
Q ss_pred CceEEEEEeCCe-EEEEeCCCeEEEEE
Q 041325 128 DAVKSLVVLGDK-LFSAHQDHKIRVWK 153 (450)
Q Consensus 128 ~~v~~l~~~~~~-l~s~~~dg~i~iw~ 153 (450)
.....++|.+++ ++.+..+|.|++++
T Consensus 31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~ 57 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIAERPGRIRLFR 57 (352)
T ss_dssp SCEEEEEECTTSCEEEEETTTEEEEEE
T ss_pred CCceEEEEcCCCeEEEEeCCCeEEEEE
Confidence 456799999887 77778889999988
No 327
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=95.50 E-value=0.97 Score=38.15 Aligned_cols=222 Identities=11% Similarity=0.130 Sum_probs=118.8
Q ss_pred ceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEcCC
Q 041325 77 YIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKIDN 156 (450)
Q Consensus 77 ~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~ 156 (450)
.|..++.-....+.-. ||.|+.|-......... + ......|..++......+.-. ||.|..|-...
T Consensus 25 ~i~~ia~G~~h~~~l~-~G~v~~wG~n~~Gqlg~-----p-------~~~~~~i~~ia~G~~hs~~l~-~G~v~~wG~n~ 90 (282)
T 3qhy_B 25 GVDAIAGGYFHGLALK-GGKVLGWGANLNGQLTM-----P-------AATQSGVDAIAAGNYHSLALK-DGEVIAWGGNE 90 (282)
T ss_dssp SCCEEEECSSEEEEEE-TTEEEEEECCSSSTTSC-----C-------GGGGSCCCEEEECSSEEEEEE-TTEEEEEECCT
T ss_pred CCcEEEeCCCeEEEEE-CCEEEEEeCCCCCCCCC-----C-------ccCCCCEEEEEeCCCEEEEEE-CCEEEEeeCCC
Confidence 4677777333333335 89999997654332211 0 011236778887777633334 89999998765
Q ss_pred CceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCcEEE
Q 041325 157 NTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRTFKI 236 (450)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 236 (450)
....- +|. .-...|..++...+. .+.-. ||.|..
T Consensus 91 ~Gqlg-----------------~P~--------------------------~~~~~v~~ia~G~~h--s~al~-~G~v~~ 124 (282)
T 3qhy_B 91 DGQTT-----------------VPA--------------------------EARSGVDAIAAGAWA--SYALK-DGKVIA 124 (282)
T ss_dssp TSTTC-----------------CCG--------------------------GGSSSEEEEEEETTE--EEEEE-TTEEEE
T ss_pred CCCCC-----------------CCc--------------------------ccCCCeEEEECcCCE--EEEEe-CCeEEE
Confidence 41100 000 011256666665433 33334 889999
Q ss_pred EecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCC
Q 041325 237 WRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDG 316 (450)
Q Consensus 237 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~ 316 (450)
|-....-.+.. .......|..++.- ....++. . ||.|..|-....... ..+. .....|..++...+.
T Consensus 125 wG~n~~gqlg~-~~~~~~~i~~i~~G--~~~~~~l-~-~G~v~~wG~n~~gql----g~p~----~~~~~v~~i~~G~~h 191 (282)
T 3qhy_B 125 WGDDSDGQTTV-PAEAQSGVTALDGG--VYTALAV-K-NGGVIAWGDNYFGQT----TVPA----EAQSGVDDVAGGIFH 191 (282)
T ss_dssp EECCTTSTTSC-CGGGGSSEEEEEEC--SSEEEEE-E-TTEEEEEECCTTSTT----SCCG----GGGSSEEEEEECSSE
T ss_pred ecCCCCCcCCC-CccCCCCeEEEEcc--cCEEEEE-E-CCEEEEecCCCCCCC----CCce----ecCCCeEEEEecCCE
Confidence 97654322211 11234567777664 3323333 3 799999975432210 0011 113567777775432
Q ss_pred CEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCC
Q 041325 317 TVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 317 ~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~ 388 (450)
.++. .||.|+.|-....-.+ .... .....|..++-...+.+.-. ||.|..|=...
T Consensus 192 -s~al--~~G~v~~wG~n~~gql----------g~p~---~~~~~v~~i~~G~~h~~al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 192 -SLAL--KDGKVIAWGDNRYKQT----------TVPT---EALSGVSAIASGEWYSLALK-NGKVIAWGSSR 246 (282)
T ss_dssp -EEEE--ETTEEEEEECCTTSTT----------CCCG---GGGSSCCEEEECSSCEEEEE-TTEEEEESTTC
T ss_pred -EEEE--ECCeEEEEECCCCCCC----------CCCc---ccCCCceEEEcCCCEEEEEE-CCEEEEecCCC
Confidence 3333 5999999986643211 0000 11234677776666555555 99999997654
No 328
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=95.34 E-value=2.4 Score=41.70 Aligned_cols=277 Identities=14% Similarity=0.174 Sum_probs=138.1
Q ss_pred CcceEEEEE-eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEE
Q 041325 75 SSYIPSLAI-AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWK 153 (450)
Q Consensus 75 ~~~v~~~~~-d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~ 153 (450)
...|.++.. +...|..|+.+| +..+|..+...... . ......|.++....+.|..++.+ -+..+|
T Consensus 62 ~~~i~~i~~d~~g~lWigT~~G-l~~yd~~~~~f~~~----~--------~~~~~~i~~i~~~~g~lWigt~~-Gl~~~~ 127 (758)
T 3ott_A 62 NTRIYCGVIIDNTYLYMGTDNG-ILVYNYRADRYEQP----E--------TDFPTDVRTMALQGDTLWLGALN-GLYTYQ 127 (758)
T ss_dssp SSCEEEEEEETTTEEEEEETTE-EEEEETTTTEECCC----S--------CCCCSCEEEEEEETTEEEEEETT-EEEEEE
T ss_pred CceEEEEEEcCCCcEEEEeCCC-eEEEeCCCCEEECc----c--------cCCCceEEEEEecCCcEEEEcCC-cceeEe
Confidence 346888877 456788888766 78899876543220 0 01123577776666667777776 578888
Q ss_pred cCCCceeEEecc-Ccccccceeeeeecc-CCCcceeEeeecCceEEEeec-cee-eee--c----CCCceEEEEEccCCC
Q 041325 154 IDNNTSAYYSTS-GKLKNKYYERIATLP-TLNDRFTKCFLANNYVQVRRH-KKC-TWV--H----HVDTVSALALSSDGS 223 (450)
Q Consensus 154 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~-~~~--~----~~~~v~~~~~~~~~~ 223 (450)
..+.+...+... ...... .+..+. ..++.+.+.. .++...+... ... .+. . ....|.++....++.
T Consensus 128 ~~~~~~~~~~~~~~~l~~~---~i~~i~~d~~g~lWigt-~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~ 203 (758)
T 3ott_A 128 LQSRKLTSFDTRRNGLPNN---TIYSIIRTKDNQIYVGT-YNGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQ 203 (758)
T ss_dssp TTTCCEEEECHHHHCCSCS---CEEEEEECTTCCEEEEE-TTEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTT
T ss_pred CCCCeEEEeccCCCCcCCC---eEEEEEEcCCCCEEEEe-CCCHhhCccCCCceEEecCCCccccccceeEEEEEECCCC
Confidence 876654333111 011111 111111 1122222222 2222222111 111 110 0 122478888887777
Q ss_pred EEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhc
Q 041325 224 LLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKH 303 (450)
Q Consensus 224 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 303 (450)
.|..|+. +-+..+|..+++... +.......|.++... .++.|..|+.+ -+.+++..+......... ......-.
T Consensus 204 ~lWigt~-~Gl~~~~~~~~~~~~-~~~l~~~~i~~i~~d--~~g~lWigT~~-Gl~~~~~~~~~~~~~~~~-~~~~~~l~ 277 (758)
T 3ott_A 204 CVWIGTE-GYLFQYFPSTGQIKQ-TEAFHNNSIKSLALD--GNGDLLAGTDN-GLYVYHNDTTPLQHIIHD-SRNIQSLT 277 (758)
T ss_dssp EEEEEEE-EEEEEEETTTTEEEE-EEEEEEEEEEEEEEC--TTCCEEEEETT-EEEEECCTTSCCEEECCC-TTCTTSCS
T ss_pred EEEEEEC-CCCeEEcCCCCeEEe-ccCCCCCeEEEEEEc--CCCCEEEEeCC-ceeEEecCCCcEEEEEcC-CCCcCcCC
Confidence 6666664 468888987765432 221223457777665 45566667754 578888755431100000 00000112
Q ss_pred ccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccc--cCCccceEEEEEeCC-eEEEEeCCCe
Q 041325 304 KSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGAL--RGHTKAILCLAVVSN-LLFSGSSDNT 380 (450)
Q Consensus 304 ~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~-~l~s~~~dg~ 380 (450)
...|.++....+|. |..|+..| +.++.... ... ....... ......|.++..+.+ .|..|+.+|
T Consensus 278 ~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~-~~~---------~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~G- 344 (758)
T 3ott_A 278 NNIIWNIFADQEHN-IWLGTDYG-ISLSRYNS-ALQ---------FIPISQITGTGDGNQFYSLFRDSKGFYWFGGANG- 344 (758)
T ss_dssp CSCEEEEEECTTCC-EEEEESSS-EEEECCCC--CE---------EEEHHHHSCSCCCCBEEEEEECTTCCEEEEETTE-
T ss_pred cCeEEEEEEcCCCC-EEEEeCCc-ccccccCC-cee---------EEecccCCCCCCCceEEEEEEcCCCCEEEeeCCc-
Confidence 35688998887776 44555566 55443221 100 0000000 112345788877643 666666555
Q ss_pred EEEeeCCC
Q 041325 381 IRIWRRSS 388 (450)
Q Consensus 381 v~iwd~~~ 388 (450)
+..++..+
T Consensus 345 l~~~~~~~ 352 (758)
T 3ott_A 345 LIRFTDPA 352 (758)
T ss_dssp EEEESCTT
T ss_pred ceeecccc
Confidence 55666543
No 329
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=95.26 E-value=0.9 Score=36.35 Aligned_cols=138 Identities=11% Similarity=0.044 Sum_probs=73.5
Q ss_pred CCEEEEEeCCCcEEEEecCCCe------EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccch
Q 041325 222 GSLLYSTSWDRTFKIWRTSDFR------CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHS 295 (450)
Q Consensus 222 ~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 295 (450)
..+|+....| +++.=...+.. ....+....-..+..++|+| +. .|.+. .+|.+.-.+..+..
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P-~G-~LYaV-~~G~Ly~~~~~t~~-------- 71 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSP-GG-ELYGV-LNDKIYKGTPPTHD-------- 71 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECT-TS-CEEEE-ETTEEEEESCCCST--------
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECC-Cc-cEEEE-eCCeEEEECCCCCC--------
Confidence 3455556666 55544444332 12223211124778999998 33 44444 77877766654332
Q ss_pred hhhhHhhcccc--------eEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccc--cCCccceEEE
Q 041325 296 LVQTLEKHKSA--------VTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGAL--RGHTKAILCL 365 (450)
Q Consensus 296 ~~~~~~~~~~~--------i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~ 365 (450)
. ..+.+.... ...+.|.|+|.+.++ .||.|+-++..+.. .....-.... ..--..+..+
T Consensus 72 ~-~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~--------~~~Wl~~a~~vg~~gw~~~~~l 140 (236)
T 1tl2_A 72 N-DNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSD--------TDNWIARATEVGSGGWSGFKFL 140 (236)
T ss_dssp T-CCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCST--------TCCHHHHSEEEECSSGGGEEEE
T ss_pred c-ccccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCC--------CCceeccccEeccCCCCceEEE
Confidence 1 111111222 378999999987777 56999888754321 0011000011 1112457888
Q ss_pred EEeCC-eEEEEeCCCeEEE
Q 041325 366 AVVSN-LLFSGSSDNTIRI 383 (450)
Q Consensus 366 ~~~~~-~l~s~~~dg~v~i 383 (450)
.+.++ .|.+.. |+.++-
T Consensus 141 ff~p~G~Lyav~-dg~lyr 158 (236)
T 1tl2_A 141 FFHPNGYLYAVH-GQQFYK 158 (236)
T ss_dssp EECTTSCEEEEE-TTEEEE
T ss_pred EECCCceEEEEe-CCcEEe
Confidence 88876 666666 887543
No 330
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=94.84 E-value=1.9 Score=37.81 Aligned_cols=110 Identities=11% Similarity=0.089 Sum_probs=56.3
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEee------cccccceEEEEEeec---CCcEEEEEcC-------C
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVK------NAHDDAINAIVVSKS---NDGFVYTGSA-------D 275 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~~~~~v~~~~~~~~---~~~~l~~~~~-------d 275 (450)
....|+|.|+|+.|+.+...|.|++++.. ++....+. .........|+++|+ +..+.++-.. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 56899999999834455668999999853 43221111 112345688999974 3333333222 2
Q ss_pred CcEEEEeCcchhhhccccchhhhhHh---hcccceEEEEEcCCCCEEEEe
Q 041325 276 TKIKVWKKLRAALQVNKKHSLVQTLE---KHKSAVTALALSTDGTVLYSG 322 (450)
Q Consensus 276 g~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~i~~l~~~~~~~~l~~g 322 (450)
..|..|++.............+..+. ........|+|.|||.+.++-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~ 147 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIAL 147 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEE
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEE
Confidence 34555555322100000001111111 111223579999999655553
No 331
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=94.75 E-value=3.5 Score=40.50 Aligned_cols=288 Identities=10% Similarity=0.076 Sum_probs=139.6
Q ss_pred cceEEEEEe-CCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe-EEEEeCCCeEEEEE
Q 041325 76 SYIPSLAIA-GKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-LFSAHQDHKIRVWK 153 (450)
Q Consensus 76 ~~v~~~~~d-~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-l~s~~~dg~i~iw~ 153 (450)
..|.++..| ...|..|+.+ -+.+++..+.+........... . .-....|.++....++ |..|+..| +.++.
T Consensus 232 ~~i~~i~~d~~g~lWigT~~-Gl~~~~~~~~~~~~~~~~~~~~-~----~l~~~~i~~i~~D~~g~lWiGT~~G-l~~~~ 304 (758)
T 3ott_A 232 NSIKSLALDGNGDLLAGTDN-GLYVYHNDTTPLQHIIHDSRNI-Q----SLTNNIIWNIFADQEHNIWLGTDYG-ISLSR 304 (758)
T ss_dssp EEEEEEEECTTCCEEEEETT-EEEEECCTTSCCEEECCCTTCT-T----SCSCSCEEEEEECTTCCEEEEESSS-EEEEC
T ss_pred CeEEEEEEcCCCCEEEEeCC-ceeEEecCCCcEEEEEcCCCCc-C----cCCcCeEEEEEEcCCCCEEEEeCCc-ccccc
Confidence 347777774 4455556654 5788887766544331111000 0 0123468888877655 88888777 54443
Q ss_pred cCCCceeEEecc---CcccccceeeeeeccCCCcceeEeeecCceEEEeecc----ee-eee-------cCCCceEEEEE
Q 041325 154 IDNNTSAYYSTS---GKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHK----KC-TWV-------HHVDTVSALAL 218 (450)
Q Consensus 154 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~-------~~~~~v~~~~~ 218 (450)
... ........ .......+..+ ....++.+-+.. .++...+.... .. .+. -....|.++.-
T Consensus 305 ~~~-~~~~~~~~~~~~~~~~~~v~~i--~~D~~g~lWiGt-~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~ 380 (758)
T 3ott_A 305 YNS-ALQFIPISQITGTGDGNQFYSL--FRDSKGFYWFGG-ANGLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYE 380 (758)
T ss_dssp CCC--CEEEEHHHHSCSCCCCBEEEE--EECTTCCEEEEE-TTEEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEE
T ss_pred cCC-ceeEEecccCCCCCCCceEEEE--EEcCCCCEEEee-CCcceeecccccccceeEEeccCCcCCCCCCCceEEEEE
Confidence 321 11111100 00001111111 111222222221 22222221111 00 111 01245888888
Q ss_pred ccCCCEEEEEeCCCcEEEEecCCCeEEEEee-cc----cccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc
Q 041325 219 SSDGSLLYSTSWDRTFKIWRTSDFRCLESVK-NA----HDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 219 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~----~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 293 (450)
..++++ ..|+ ++-|..||..+++...... .. ....|.++... .++.|..|+..+-|..+|..+........
T Consensus 381 d~~g~l-Wigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d--~~g~lWigT~~~Gl~~~~~~~~~~~~~~~ 456 (758)
T 3ott_A 381 DKEQQL-WIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFED--TAGQLWISTCLGGIFVVDKHKLMQSTSGQ 456 (758)
T ss_dssp CTTSCE-EEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEEC--TTSEEEEEESSSCEEEEEHHHHHHCCSSE
T ss_pred CCCCCE-EEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEc--CCCCEEEEECCCceEEEccccccccCCcc
Confidence 888874 4455 4578899998776543221 01 12346666654 56678888877778888854311000000
Q ss_pred ch---hhhhHhh-cccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeC
Q 041325 294 HS---LVQTLEK-HKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVS 369 (450)
Q Consensus 294 ~~---~~~~~~~-~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 369 (450)
.. ......+ ....|.++...++|++.+.++..+-|..+|..+++...-.. ..+ .....+.++..+.
T Consensus 457 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~---------~~~-~~~~~~~~i~~d~ 526 (758)
T 3ott_A 457 YIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFA---------DEL-TGEKSPNYLLCDE 526 (758)
T ss_dssp EECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECT---------TTS-CGGGCEEEEEECT
T ss_pred eecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecC---------CCc-CCCcccceEEECC
Confidence 00 0000011 22458899999888876633334558889988765431100 001 1134567777764
Q ss_pred C-eEEEEeCCCeEEEeeCCCC
Q 041325 370 N-LLFSGSSDNTIRIWRRSSS 389 (450)
Q Consensus 370 ~-~l~s~~~dg~v~iwd~~~~ 389 (450)
+ .|..|+.+ -+..++..+.
T Consensus 527 ~g~lWigt~~-Gl~~~~~~~~ 546 (758)
T 3ott_A 527 DGLLWVGFHG-GVMRINPKDE 546 (758)
T ss_dssp TSCEEEEETT-EEEEECC--C
T ss_pred CCCEEEEecC-ceEEEecCCC
Confidence 3 55666655 4778887653
No 332
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=94.57 E-value=2.2 Score=37.30 Aligned_cols=113 Identities=12% Similarity=0.120 Sum_probs=69.6
Q ss_pred ceEEEEEccCCCEEEEEe-----------------CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcC
Q 041325 212 TVSALALSSDGSLLYSTS-----------------WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSA 274 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~-----------------~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~ 274 (450)
..+.+.+.++|.+.++.. ..|.|.-+|. ++. ..+. ..-...+.++|+|+++.+.++-+.
T Consensus 166 ~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~~-~~~~-~~l~~pNGia~spDg~~lYvadt~ 241 (355)
T 3sre_A 166 SVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDV-RVVA-EGFDFANGINISPDGKYVYIAELL 241 (355)
T ss_dssp SEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TCC-EEEE-EEESSEEEEEECTTSSEEEEEEGG
T ss_pred CCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--CeE-EEee-cCCcccCcceECCCCCEEEEEeCC
Confidence 578899999998766643 1244555554 322 2222 234567999999977766777778
Q ss_pred CCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcC-CCCEEEEeeCC-CcEEEEEcC
Q 041325 275 DTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALST-DGTVLYSGACD-RSILVWERD 334 (450)
Q Consensus 275 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~l~~g~~d-g~i~vwd~~ 334 (450)
.+.|..|++..... ......+ ......-.+++.+ +|++.+++..+ +.|..|+..
T Consensus 242 ~~~I~~~~~~~~g~-----l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 242 AHKIHVYEKHANWT-----LTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp GTEEEEEEECTTSC-----EEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCCTT
T ss_pred CCeEEEEEECCCCc-----EecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEECCC
Confidence 89999999863210 0011112 1245678899998 59877766544 345555443
No 333
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=94.51 E-value=3.6 Score=39.89 Aligned_cols=155 Identities=9% Similarity=0.120 Sum_probs=78.7
Q ss_pred cCCCEEEEEeCC----CcEEEEecCCCeEEEEe-e-----cccccceEEEEEeecCCcEEEEEcCC------CcEEEEeC
Q 041325 220 SDGSLLYSTSWD----RTFKIWRTSDFRCLESV-K-----NAHDDAINAIVVSKSNDGFVYTGSAD------TKIKVWKK 283 (450)
Q Consensus 220 ~~~~~l~~~~~d----g~i~iwd~~~~~~~~~~-~-----~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~vwd~ 283 (450)
.++.+++.|+.+ ..+.+||..+.+-...- . ......-.+++....++.+++.|+.+ ..+.+||.
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~ 475 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM 475 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence 456777777753 45888898876533222 1 01111223333331134466666643 35778888
Q ss_pred cchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCC--cEEEEEcCCCceeeeCCCCCCceeeeccccCCccc
Q 041325 284 LRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDR--SILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA 361 (450)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (450)
.+.... .+..+...... .+++...++++++.|+.++ .+.+||..+.+....... .........
T Consensus 476 ~t~~W~------~~~~~p~~R~~-h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~--------g~~p~~r~~ 540 (695)
T 2zwa_A 476 KTREWS------MIKSLSHTRFR-HSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPK--------DEFFQNSLV 540 (695)
T ss_dssp TTTEEE------ECCCCSBCCBS-CEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCS--------SGGGGSCCB
T ss_pred CCCcEE------ECCCCCCCccc-ceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCC--------CCCCCcccc
Confidence 765422 22222211122 2233323788888887655 699999987654311000 001111111
Q ss_pred eEEEEEe---CCeEEEEeC--C-----CeEEEeeCCCC
Q 041325 362 ILCLAVV---SNLLFSGSS--D-----NTIRIWRRSSS 389 (450)
Q Consensus 362 v~~~~~~---~~~l~s~~~--d-----g~v~iwd~~~~ 389 (450)
-.++.+. +.+++.|+. + +.+.+||+.+.
T Consensus 541 ~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 541 SAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp SCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred eeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 1334455 446666765 2 45888998864
No 334
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=94.41 E-value=1.2 Score=38.93 Aligned_cols=94 Identities=4% Similarity=0.076 Sum_probs=46.4
Q ss_pred CCCEEEEEeC-CCcEEEEecCC--CeEEEEeec-c-cccceEEEEEeecCCcEEEEEcC-C---------CcEEEEeCcc
Q 041325 221 DGSLLYSTSW-DRTFKIWRTSD--FRCLESVKN-A-HDDAINAIVVSKSNDGFVYTGSA-D---------TKIKVWKKLR 285 (450)
Q Consensus 221 ~~~~l~~~~~-dg~i~iwd~~~--~~~~~~~~~-~-~~~~v~~~~~~~~~~~~l~~~~~-d---------g~i~vwd~~~ 285 (450)
++.+++.|+. ...+.+||+.+ .+- ..+.. . ....-.+++.. ++.+++.|+. + ..+.+||..+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W-~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKW-TALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCE-EECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCe-eECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 5666666653 35688889864 221 12211 1 11122233333 4556666665 2 4688899877
Q ss_pred hhhhccccchhhhhHh-hcccceEEEEEcCCCCEEEEeeCC
Q 041325 286 AALQVNKKHSLVQTLE-KHKSAVTALALSTDGTVLYSGACD 325 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~g~~d 325 (450)
.+.. .+..+. ........+. .++++++.|+.+
T Consensus 96 ~~W~------~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~ 128 (357)
T 2uvk_A 96 NSWV------KLMSHAPMGMAGHVTFV--HNGKAYVTGGVN 128 (357)
T ss_dssp TEEE------ECSCCCSSCCSSEEEEE--ETTEEEEEECCC
T ss_pred CcEE------ECCCCCCcccccceEEE--ECCEEEEEeCcC
Confidence 6532 121111 1112222233 467788888754
No 335
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=94.17 E-value=0.24 Score=42.88 Aligned_cols=119 Identities=9% Similarity=0.085 Sum_probs=71.6
Q ss_pred CEEEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEe--ecCCcEEEEE-cCCCcEEEEeCcchhhhccccchhhhh
Q 041325 223 SLLYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVS--KSNDGFVYTG-SADTKIKVWKKLRAALQVNKKHSLVQT 299 (450)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~l~~~-~~dg~i~vwd~~~~~~~~~~~~~~~~~ 299 (450)
.+++.++.||.|.-.|..+|+.+..+......++....-. +.++..++.. +.||.|..++..++.... .. .+..
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~--~~-~~~~ 87 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKL--PL-SIRQ 87 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEE--EE-EHHH
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEe--ee-cccc
Confidence 4688899999999999999999998873311222221100 0112233333 689999999987664211 11 1111
Q ss_pred HhhcccceEE---EEE-----cCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCC
Q 041325 300 LEKHKSAVTA---LAL-----STDGTVLYSGACDRSILVWERDQGNYIVDGDDD 345 (450)
Q Consensus 300 ~~~~~~~i~~---l~~-----~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 345 (450)
+. ..+++.. ... ...+..+++|+.+|.+...|+.+|+.+......
T Consensus 88 lv-~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~ 140 (339)
T 2be1_A 88 LV-STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG 140 (339)
T ss_dssp HH-TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred ce-eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence 11 1222221 000 014568899999999999999999988776543
No 336
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=94.09 E-value=3.1 Score=37.23 Aligned_cols=274 Identities=10% Similarity=0.087 Sum_probs=132.1
Q ss_pred CcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEe-cCCCceEEEEEeCCeEEEEeCC-CeEEEE
Q 041325 75 SSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVAT-GNGDAVKSLVVLGDKLFSAHQD-HKIRVW 152 (450)
Q Consensus 75 ~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~l~s~~~d-g~i~iw 152 (450)
...|..++.-+...+.-..||.|+.|-....-.+-...... ......+. -....|..++...+..+.-..| +.|..|
T Consensus 15 ~~~v~~ia~G~~hs~al~~~g~v~~wG~n~~GqLG~g~~~~-~~~P~~v~~l~~~~i~~va~G~~ht~al~~~gg~v~~w 93 (406)
T 4d9s_A 15 PRKVLIISAGASHSVALLSGDIVCSWGRGEDGQLGHGDAED-RPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSW 93 (406)
T ss_dssp CCCEEEEEECSSEEEEEETTTEEEEEECCTTSTTCSSSCCC-EEEEEECGGGTTSCEEEEEECSSEEEEEETTTTEEEEE
T ss_pred ccceEEEecCCCeEEEEEeCCEEEEEeCCCCCCCCCCCccc-CcCCEEecccCCCCEEEEEeCcceEEEEECCCCEEEEE
Confidence 34677788866666667778999999755422111100000 00000111 1234678888777774444555 599999
Q ss_pred EcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCC
Q 041325 153 KIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDR 232 (450)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 232 (450)
-....-..-. +.. ....... +.. ......|..++.. ....+.-..||
T Consensus 94 G~n~~GqLG~---g~~-~~~~~p~-------------------------~v~--~l~~~~i~~ia~G--~~h~~alt~~G 140 (406)
T 4d9s_A 94 GWGDFGRLGH---GNS-SDLFTPL-------------------------PIK--ALHGIRIKQIACG--DSHCLAVTMEG 140 (406)
T ss_dssp ECCGGGTTCS---SSC-CCEEEEE-------------------------ECG--GGTTCCEEEEEEC--SSEEEEEETTS
T ss_pred cCCCCcCCCC---CCC-Cccccce-------------------------Eec--ccCCCCEEEEEEC--hhheEEEcCCC
Confidence 6543211000 000 0000000 000 0012245556554 33455556788
Q ss_pred cEEEEecCCC----------e-EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchh-hhccc---cchhh
Q 041325 233 TFKIWRTSDF----------R-CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAA-LQVNK---KHSLV 297 (450)
Q Consensus 233 ~i~iwd~~~~----------~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~~---~~~~~ 297 (450)
.|..|-.... . ....+.......|..++.- ..+.++-..+|.|..|-..... +.... ...+.
T Consensus 141 ~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~i~~va~G---~~hs~alt~~G~v~~wG~n~~GqlG~g~~~~~~~p~ 217 (406)
T 4d9s_A 141 EVQSWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAG---AEHTAAVTEDGDLYGWGWGRYGNLGLGDRTDRLVPE 217 (406)
T ss_dssp CEEEEECCTTSTTCSSSCCCEEEEEECGGGTTCCEEEEEEC---SSEEEEEETTSCEEEEECCTTSTTCSSSSCCEEEEE
T ss_pred cEEEeCCCCCccCCCCCCCCcccceEecccCCCcEEEEecC---CCeEEEEeCCCCEEEeeCCCCCCCCCCCCCCcCccE
Confidence 9999965431 1 1111221122356666653 4466666789999999643211 00000 00000
Q ss_pred hhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEeC
Q 041325 298 QTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSS 377 (450)
Q Consensus 298 ~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~ 377 (450)
.........|..++.. ..+.++-..+|.|+.|-....-.+-.... .....+..........|..++-...+.+.-..
T Consensus 218 ~v~~~~~~~i~~va~G--~~ht~~l~~~G~v~~wG~n~~GqlG~g~~-~~~~~p~~v~~~~~~~v~~i~~G~~hs~alt~ 294 (406)
T 4d9s_A 218 RVTSTGGEKMSMVACG--WRHTISVSYSGALYTYGWSKYGQLGHGDL-EDHLIPHKLEALSNSFISQISGGWRHTMALTS 294 (406)
T ss_dssp ECCCSTTCCEEEEEEC--SSEEEEEETTCCEEEEECCTTSTTCSSSC-CCEEEEEECGGGTTSCEEEEEECSSEEEEEET
T ss_pred EecccCCceEEEEEEC--CCcEEEEcCCCCEEEeeCCCCCCCCCCCC-cCccccEEecccCCCCEEEEEecCCEEEEEcC
Confidence 0001112346666553 34555667899999997654322111110 01111111111223457777777777777789
Q ss_pred CCeEEEeeCCC
Q 041325 378 DNTIRIWRRSS 388 (450)
Q Consensus 378 dg~v~iwd~~~ 388 (450)
||.|+.|=.+.
T Consensus 295 ~G~v~~wG~n~ 305 (406)
T 4d9s_A 295 DGKLYGWGWNK 305 (406)
T ss_dssp TSCEEEEECCT
T ss_pred CCeEEEeeCCC
Confidence 99999996543
No 337
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=93.97 E-value=3 Score=36.54 Aligned_cols=26 Identities=12% Similarity=0.199 Sum_probs=21.1
Q ss_pred CceEEEEEeCCe-EEEEeCCCeEEEEE
Q 041325 128 DAVKSLVVLGDK-LFSAHQDHKIRVWK 153 (450)
Q Consensus 128 ~~v~~l~~~~~~-l~s~~~dg~i~iw~ 153 (450)
.....|+|.+++ |+.+..+|.|++++
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d 55 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLIS 55 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEEC
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEe
Confidence 467889998776 78888889998886
No 338
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=93.57 E-value=5.7 Score=38.52 Aligned_cols=119 Identities=10% Similarity=0.026 Sum_probs=61.0
Q ss_pred cCCCEEEEEeCCC--cEEEEecCCCeEEEEee---cc-cccceEEEEEeecCCcEEEEEcC--C-----CcEEEEeCcch
Q 041325 220 SDGSLLYSTSWDR--TFKIWRTSDFRCLESVK---NA-HDDAINAIVVSKSNDGFVYTGSA--D-----TKIKVWKKLRA 286 (450)
Q Consensus 220 ~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~---~~-~~~~v~~~~~~~~~~~~l~~~~~--d-----g~i~vwd~~~~ 286 (450)
.++.+++.|+.++ .+.+||..+.+-...-. .. ......++.+....+.+++.|+. + +.+..||+.+.
T Consensus 499 ~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 499 PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 3778888887654 68999998865332211 01 11122234444322446666665 2 45888998766
Q ss_pred hhhccccchhhhhH-hhcccceEEEEEcCCCCEEEEeeC--------CCcEEEEEcCCCcee
Q 041325 287 ALQVNKKHSLVQTL-EKHKSAVTALALSTDGTVLYSGAC--------DRSILVWERDQGNYI 339 (450)
Q Consensus 287 ~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~l~~g~~--------dg~i~vwd~~~~~~~ 339 (450)
.......+..+... .........+ ...++++++.|+. ...+.+||+.+.+..
T Consensus 579 ~w~~~~~W~~~~~~p~~~R~~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 579 NATEPITVIKKLQHPLFQRYGSQIK-YITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLT 639 (695)
T ss_dssp CSSCCEEEEEEEECGGGCCBSCEEE-EEETTEEEEECCBCSSCCCCTTTSEEEEETTTTEEE
T ss_pred ccccceEEEEcCCCCCCCcccceEE-EeCCCEEEEECCccCCCCCCCCCeEEEEECCCCeEE
Confidence 51000001111111 0111122222 3323777788774 345899999877643
No 339
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=93.56 E-value=0.91 Score=36.34 Aligned_cols=110 Identities=12% Similarity=0.066 Sum_probs=61.7
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCeE------EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcc
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRC------LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLR 285 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~ 285 (450)
.+..++|+|+|.+.++ .+|.+.-.+..+... -..+-...-..-.++.|.+ ++.|.+. .||.|.-++..+
T Consensus 42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~--~G~LYav-~dG~iyr~~pP~ 116 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP--NGYLYAV-SKDKLYKASPPQ 116 (236)
T ss_dssp TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT--TSCEEEE-ETTEEEEESCCC
T ss_pred cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccceEEEECC--CCCEEEe-CCCEEEEeCCCc
Confidence 6779999999986666 678776666644221 1111100111136777775 3444444 669888777533
Q ss_pred hhhhccccchhhhhHhh--cccceEEEEEcCCCCEEEEeeCCCcEEEE
Q 041325 286 AALQVNKKHSLVQTLEK--HKSAVTALALSTDGTVLYSGACDRSILVW 331 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~~--~~~~i~~l~~~~~~~~l~~g~~dg~i~vw 331 (450)
... ..+.-.....+ -=..+..|.+.|+|.+.++. |+.++-.
T Consensus 117 ~~~---~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~ 159 (236)
T 1tl2_A 117 SDT---DNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKA 159 (236)
T ss_dssp STT---CCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEE
T ss_pred CCC---CceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEec
Confidence 220 11100000000 11467999999999877666 7876543
No 340
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=93.10 E-value=2.7 Score=43.82 Aligned_cols=75 Identities=11% Similarity=0.027 Sum_probs=47.7
Q ss_pred cceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEc
Q 041325 254 DAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWER 333 (450)
Q Consensus 254 ~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~ 333 (450)
+-..++..++ ..+.+..-+.-|.|.+||+.++. ++..-+-....|...+.+....-++.....|.|.-..+
T Consensus 259 Dfpv~~~vs~-k~g~iy~itk~G~~~~~d~~t~~--------~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v 329 (1630)
T 1xi4_A 259 DFPVAMQISE-KHDVVFLITKYGYIHLYDLETGT--------CIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCV 329 (1630)
T ss_pred CcceEEEecc-ccCEEEEEecCceEEEEecccch--------hhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEE
Confidence 3445666766 44578888899999999998877 55544444555655555444334444456676666665
Q ss_pred CCCc
Q 041325 334 DQGN 337 (450)
Q Consensus 334 ~~~~ 337 (450)
...+
T Consensus 330 ~~~~ 333 (1630)
T 1xi4_A 330 EEEN 333 (1630)
T ss_pred ccch
Confidence 5443
No 341
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=93.09 E-value=1.2 Score=40.67 Aligned_cols=113 Identities=12% Similarity=0.123 Sum_probs=60.5
Q ss_pred CceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEE--EEeec-----ccccceEEEEEeec---CCcEEEEEcC------
Q 041325 211 DTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCL--ESVKN-----AHDDAINAIVVSKS---NDGFVYTGSA------ 274 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~-----~~~~~v~~~~~~~~---~~~~l~~~~~------ 274 (450)
.....|+|.|+|+++++-...+.|++++..+++.. ..+.. ........|+++|+ +..+.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 35679999999997776544457988887655432 22221 12456779999984 3333333321
Q ss_pred ------CCcEEEEeCcchhhhccccchhhhhHh-hcccceEEEEEcCCCCEEEEee
Q 041325 275 ------DTKIKVWKKLRAALQVNKKHSLVQTLE-KHKSAVTALALSTDGTVLYSGA 323 (450)
Q Consensus 275 ------dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~g~ 323 (450)
...|.-|+..............+..+. ........|+|.|||.+.++.+
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G 162 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence 134555554322100000011111111 1123468899999998777644
No 342
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=92.97 E-value=6.5 Score=37.46 Aligned_cols=156 Identities=13% Similarity=0.078 Sum_probs=92.2
Q ss_pred CceEEEEEccCCCE-EEEEeCCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhh
Q 041325 211 DTVSALALSSDGSL-LYSTSWDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQ 289 (450)
Q Consensus 211 ~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~ 289 (450)
..+.+++|++.+.. +++-...+.|..+++........+. ........+++.+..+++.++-...+.|.+.++.....
T Consensus 349 ~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~-~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~- 426 (619)
T 3s94_A 349 RHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVT-AQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMR- 426 (619)
T ss_dssp SSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSC-
T ss_pred CccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEE-CCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeE-
Confidence 35678899885444 4444457888888887543322232 33356778888876676778878889999998764320
Q ss_pred ccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC--CCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEE
Q 041325 290 VNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC--DRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV 367 (450)
Q Consensus 290 ~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 367 (450)
. .+ ....-.....|++.|...+|+.... .+.|...++...... .+ ....-.....|++
T Consensus 427 ----~-~l--~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~----------~l---~~~~l~~P~Glal 486 (619)
T 3s94_A 427 ----K-IL--ISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRV----------VL---VNTSLGWPNGLAL 486 (619)
T ss_dssp ----E-EE--ECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCE----------EE---ECSSCSCEEEEEE
T ss_pred ----E-EE--EECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccE----------EE---EeCCCCCCeeeEE
Confidence 0 11 1112356789999996445555442 356766666532111 01 1112234567777
Q ss_pred e--CCeEEEE-eCCCeEEEeeCCC
Q 041325 368 V--SNLLFSG-SSDNTIRIWRRSS 388 (450)
Q Consensus 368 ~--~~~l~s~-~~dg~v~iwd~~~ 388 (450)
+ .+.|..+ +..+.|..+++..
T Consensus 487 D~~~~~LY~aD~~~~~I~~~~~dG 510 (619)
T 3s94_A 487 DYDEGKIYWGDAKTDKIEVMNTDG 510 (619)
T ss_dssp ETTTTEEEEEETTTTEEEEEESSS
T ss_pred cccCCEEEEEECCCCEEEEEecCC
Confidence 7 3444444 4557788888764
No 343
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=92.25 E-value=6.2 Score=35.47 Aligned_cols=272 Identities=10% Similarity=0.023 Sum_probs=135.1
Q ss_pred cceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCC-CCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEEEc
Q 041325 76 SYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDV-GDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVWKI 154 (450)
Q Consensus 76 ~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~~ 154 (450)
..|..|+.-+...+.-..||.|+.|-....-.+-...... ...... ...-...|..|+......+.-..||.|..|-.
T Consensus 75 ~~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~-~v~~~~~i~~va~G~~hs~al~~~G~v~~wG~ 153 (423)
T 3mvd_K 75 PDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPD-LIDLPGKALCISAGDSHSACLLEDGRVFAWGS 153 (423)
T ss_dssp SSEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCE-ECCCSSCEEEEEECSSEEEEEETTSCEEEEEC
T ss_pred CCceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCe-EEcCCCCEEEEEcCcCeEEEEeCCCeEEEEeC
Confidence 3578888877777777889999999765422111100000 000011 11123467888877777777788999999986
Q ss_pred --CCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCC
Q 041325 155 --DNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDR 232 (450)
Q Consensus 155 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 232 (450)
...-..-...... ...... ......|..++.. ....+.-..+|
T Consensus 154 ~~n~~GqlG~~~~~~----~~~p~~-----------------------------~~~~~~i~~va~G--~~hs~alt~~G 198 (423)
T 3mvd_K 154 FRDSHGNMGLTIDGN----KRTPID-----------------------------LMEGTVCCSIASG--ADHLVILTTAG 198 (423)
T ss_dssp EECSSSEEESBTTBC----EEEEEE-----------------------------SSTTCCEEEEEEC--SSEEEEEETTS
T ss_pred CCCCCCCcCcCCCCC----CceeeE-----------------------------ecCCCcEEEEecC--CCeEEEEecCC
Confidence 3221100000000 000000 0112245556554 33455556788
Q ss_pred cEEEEecCCCeE----------------------EEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchh-hh
Q 041325 233 TFKIWRTSDFRC----------------------LESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAA-LQ 289 (450)
Q Consensus 233 ~i~iwd~~~~~~----------------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~ 289 (450)
.|..|-....-. ...+.......|..++.. ....++.-..+|.|..|-..... +.
T Consensus 199 ~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g--~~~~~~~~~~~g~v~~wG~n~~gqlg 276 (423)
T 3mvd_K 199 KVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWAT--NYCTFMRESQTQVIWATGLNNFKQLA 276 (423)
T ss_dssp CEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEE--TTEEEEEETTTCCEEEEEECTTCTTS
T ss_pred eEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEEC--CcEEEEEECCCCeEEEEeCCCCCcCC
Confidence 888885432110 111111223456666654 33344444789999999653311 00
Q ss_pred cccc--chhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEE
Q 041325 290 VNKK--HSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV 367 (450)
Q Consensus 290 ~~~~--~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 367 (450)
.... .............|..|+.. ..+.++-..||.|+.|-....-.+-...... .......+..-...|..++-
T Consensus 277 ~~~~~~~~~~~p~~~~~~~v~~ia~G--~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~-~~~~p~~v~~l~~~v~~ia~ 353 (423)
T 3mvd_K 277 HETKGKEFALTPIKTELKDIRHIAGG--QHHTVILTTDLKCSVVGRPEYGRLGLGDVKD-VVEKPTIVKKLTEKIVSVGC 353 (423)
T ss_dssp SCCTTCSEEEEEEEECCCSEEEEEEC--SSEEEEEETTCCEEEEECCGGGTTCSSSCCS-CEEEEEECTTCCSCEEEEEE
T ss_pred CCCCCCceeeeeEEcCCCCeEEEEcc--cCeEEEEeCCCcEEEEECCCCCCCCCCCccc-cccCceEeccCCCCEEEEEc
Confidence 0000 00000000012346666553 3455566789999999765321111111000 01111122222236888887
Q ss_pred eCCeEEEEeCCCeEEEeeCCC
Q 041325 368 VSNLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 368 ~~~~l~s~~~dg~v~iwd~~~ 388 (450)
...+.+.-..||.|+.|=...
T Consensus 354 G~~hs~alt~~G~v~~wG~n~ 374 (423)
T 3mvd_K 354 GEVCSYAVTIDGKLYSWGSGV 374 (423)
T ss_dssp ETTEEEEEETTSCEEEEECCT
T ss_pred CCCeEEEEcCCCCEEEECCCC
Confidence 777777778999999996553
No 344
>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}
Probab=92.12 E-value=6.4 Score=35.36 Aligned_cols=266 Identities=8% Similarity=-0.005 Sum_probs=126.1
Q ss_pred CceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeee
Q 041325 128 DAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWV 207 (450)
Q Consensus 128 ~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (450)
..|..|+......+.-..||.|..|=....-..-........ ...| ...
T Consensus 75 ~~v~~va~G~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~-------~~~P------------------------~~v 123 (423)
T 3mvd_K 75 PDAVDISAGGMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGS-------ESKP------------------------DLI 123 (423)
T ss_dssp SSEEEEEECSSEEEEEETTSCEEEEECCSSSTTCSCCCSTTS-------SSSC------------------------EEC
T ss_pred CCceEEeeCCCeEEEEeCCCeEEEeECCCCcCCCCCCcCCcc-------ccCC------------------------eEE
Confidence 457788877777777788999999976543110000000000 0000 000
Q ss_pred cCCCceEEEEEccCCCEEEEEeCCCcEEEEec--CC-CeE--------EEEeecccccceEEEEEeecCCcEEEEEcCCC
Q 041325 208 HHVDTVSALALSSDGSLLYSTSWDRTFKIWRT--SD-FRC--------LESVKNAHDDAINAIVVSKSNDGFVYTGSADT 276 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~--~~-~~~--------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 276 (450)
.....|..++.. ....+.-..||.|..|-. .. ++. ...........|..|+.- ..+.++-..+|
T Consensus 124 ~~~~~i~~va~G--~~hs~al~~~G~v~~wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G---~~hs~alt~~G 198 (423)
T 3mvd_K 124 DLPGKALCISAG--DSHSACLLEDGRVFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASG---ADHLVILTTAG 198 (423)
T ss_dssp CCSSCEEEEEEC--SSEEEEEETTSCEEEEECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEEC---SSEEEEEETTS
T ss_pred cCCCCEEEEEcC--cCeEEEEeCCCeEEEEeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecC---CCeEEEEecCC
Confidence 011245555443 234444567888888864 22 211 111111233456666653 44666667899
Q ss_pred cEEEEeCcchh-hhcccc--------------chhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeee
Q 041325 277 KIKVWKKLRAA-LQVNKK--------------HSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVD 341 (450)
Q Consensus 277 ~i~vwd~~~~~-~~~~~~--------------~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~ 341 (450)
.|..|-..... +..... ..+..........|..++... ...++.-..+|.|+.|-....-.+-.
T Consensus 199 ~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~p~~v~~~~~~~v~~i~~g~-~~~~~~~~~~g~v~~wG~n~~gqlg~ 277 (423)
T 3mvd_K 199 KVFTVGCAEQGQLGRLSERSISGEGRRGKRDLLRPTQLIITRAKPFEAIWATN-YCTFMRESQTQVIWATGLNNFKQLAH 277 (423)
T ss_dssp CEEEEECCTTSTTSSCCTTTTTSCSTTTTTTTSSCEEECCTTCCCEEEEEEET-TEEEEEETTTCCEEEEEECTTCTTSS
T ss_pred eEEEeeCCcCCccCCCcccccccccccccccccCCeEEeecCCccEEEEEECC-cEEEEEECCCCeEEEEeCCCCCcCCC
Confidence 99999643211 100000 000000001123455555442 22233335789999997654322211
Q ss_pred CCCCCC-ceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCCCcc-cc---CCCceeEEEecCCCcceEEEEEE
Q 041325 342 GDDDSG-HMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSSSVT-DH---QKGYSCLAVLEGHRRPVKCLTAV 416 (450)
Q Consensus 342 ~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~---~~~~~~~~~~~~h~~~v~~l~~~ 416 (450)
...... ...+. ... ...|..++-...+.+.-..||.|+.|=...... .. .........+..-...|..|+..
T Consensus 278 ~~~~~~~~~~p~-~~~--~~~v~~ia~G~~ht~alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G 354 (423)
T 3mvd_K 278 ETKGKEFALTPI-KTE--LKDIRHIAGGQHHTVILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCG 354 (423)
T ss_dssp CCTTCSEEEEEE-EEC--CCSEEEEEECSSEEEEEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEE
T ss_pred CCCCCceeeeeE-EcC--CCCeEEEEcccCeEEEEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcC
Confidence 000000 01111 111 346777777777777788999999996543110 00 01011122222222357777655
Q ss_pred ecCCCCCCCCCCCCceEEEEEcccCCcEEEEE
Q 041325 417 VDSDYSNRNSDHSSTSFLVYSGSLDCEIKIWQ 448 (450)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~l~s~~~Dg~i~iw~ 448 (450)
... .+.-..||.|+.|-
T Consensus 355 ~~h---------------s~alt~~G~v~~wG 371 (423)
T 3mvd_K 355 EVC---------------SYAVTIDGKLYSWG 371 (423)
T ss_dssp TTE---------------EEEEETTSCEEEEE
T ss_pred CCe---------------EEEEcCCCCEEEEC
Confidence 442 33336788888883
No 345
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=90.94 E-value=8.4 Score=34.40 Aligned_cols=271 Identities=10% Similarity=0.092 Sum_probs=131.3
Q ss_pred cceEEEEEeCCEEEEeeCC-CcEEEecCCCCCceeeeecCCCCcceeEE-ecCCCceEEEEEeCCeEEEEeCCCeEEEEE
Q 041325 76 SYIPSLAIAGKLLYGGSSN-GEIRAWNRDPNNYVNITSTDVGDHANVVA-TGNGDAVKSLVVLGDKLFSAHQDHKIRVWK 153 (450)
Q Consensus 76 ~~v~~~~~d~~~l~tgs~d-g~v~vw~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~l~~~~~~l~s~~~dg~i~iw~ 153 (450)
..|..++.-....+.-..| |.|+.|-......+-..... ........ ......|..|+......+.-..||.|..|-
T Consensus 68 ~~i~~va~G~~ht~al~~~gg~v~~wG~n~~GqLG~g~~~-~~~~p~~v~~l~~~~i~~ia~G~~h~~alt~~G~v~~wG 146 (406)
T 4d9s_A 68 HQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSS-DLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQSWG 146 (406)
T ss_dssp SCEEEEEECSSEEEEEETTTTEEEEEECCGGGTTCSSSCC-CEEEEEECGGGTTCCEEEEEECSSEEEEEETTSCEEEEE
T ss_pred CCEEEEEeCcceEEEEECCCCEEEEEcCCCCcCCCCCCCC-ccccceEecccCCCCEEEEEEChhheEEEcCCCcEEEeC
Confidence 4688888844444444444 59999965432111000000 00000001 112336888887777777778899999997
Q ss_pred cCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCc
Q 041325 154 IDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRT 233 (450)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 233 (450)
....-..-.... ........+.. .....|..++.. ....+.-..+|.
T Consensus 147 ~n~~GqLG~g~~--~~~~~p~~v~~-----------------------------~~~~~i~~va~G--~~hs~alt~~G~ 193 (406)
T 4d9s_A 147 RNQNGQLGLGDT--EDSLVPQKIQA-----------------------------FEGIRIKMVAAG--AEHTAAVTEDGD 193 (406)
T ss_dssp CCTTSTTCSSSC--CCEEEEEECGG-----------------------------GTTCCEEEEEEC--SSEEEEEETTSC
T ss_pred CCCCccCCCCCC--CCcccceEecc-----------------------------cCCCcEEEEecC--CCeEEEEeCCCC
Confidence 654311000000 00000000000 011245555543 334455567888
Q ss_pred EEEEecCCC----------e-EEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchh-hhc-----cccchh
Q 041325 234 FKIWRTSDF----------R-CLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAA-LQV-----NKKHSL 296 (450)
Q Consensus 234 i~iwd~~~~----------~-~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~-----~~~~~~ 296 (450)
|..|-.... . ....+.......|..++.- ..+.+.-..+|.|..|-..... +.. ......
T Consensus 194 v~~wG~n~~GqlG~g~~~~~~~p~~v~~~~~~~i~~va~G---~~ht~~l~~~G~v~~wG~n~~GqlG~g~~~~~~~p~~ 270 (406)
T 4d9s_A 194 LYGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACG---WRHTISVSYSGALYTYGWSKYGQLGHGDLEDHLIPHK 270 (406)
T ss_dssp EEEEECCTTSTTCSSSSCCEEEEEECCCSTTCCEEEEEEC---SSEEEEEETTCCEEEEECCTTSTTCSSSCCCEEEEEE
T ss_pred EEEeeCCCCCCCCCCCCCCcCccEEecccCCceEEEEEEC---CCcEEEEcCCCCEEEeeCCCCCCCCCCCCcCccccEE
Confidence 888854321 1 1111221222456666653 4455666788999999643321 000 000111
Q ss_pred hhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEe
Q 041325 297 VQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGS 376 (450)
Q Consensus 297 ~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~ 376 (450)
+..+ ....|..++.. ....++-..||.|+.|-....-.+-.... .....+..........|..++-...+.++-.
T Consensus 271 v~~~--~~~~v~~i~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~-~~~~~p~~v~~~~~~~v~~va~G~~hs~alt 345 (406)
T 4d9s_A 271 LEAL--SNSFISQISGG--WRHTMALTSDGKLYGWGWNKFGQVGVGNN-LDQCSPVQVRFPDDQKVVQVSCGWRHTLAVT 345 (406)
T ss_dssp CGGG--TTSCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTCSSSS-SCEEEEEEECCGGGCCEEEEEECSSEEEEEE
T ss_pred eccc--CCCCEEEEEec--CCEEEEEcCCCeEEEeeCCCCCCCCCCCC-CCCccCEEEeccCCCcEEEEEeCCCeEEEEe
Confidence 1111 12346666653 34555567899999997654222110000 1111111111122346777877777777778
Q ss_pred CCCeEEEeeCCC
Q 041325 377 SDNTIRIWRRSS 388 (450)
Q Consensus 377 ~dg~v~iwd~~~ 388 (450)
.||.|+.|=...
T Consensus 346 ~~G~v~~wG~n~ 357 (406)
T 4d9s_A 346 ERNNVFAWGRGT 357 (406)
T ss_dssp TTSCEEEEECCT
T ss_pred CCCCEEEecCCC
Confidence 999999996543
No 346
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=90.29 E-value=8.6 Score=33.49 Aligned_cols=72 Identities=13% Similarity=0.145 Sum_probs=41.2
Q ss_pred CcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC-----eEEEEeC-C
Q 041325 75 SSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD-----KLFSAHQ-D 146 (450)
Q Consensus 75 ~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-----~l~s~~~-d 146 (450)
-..-..|+| ||+++++ ..+|.|++++ +++........ ...........|+++++ .|+.+.. +
T Consensus 30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~-------v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~ 99 (352)
T 2ism_A 30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELS-------VYHRGESGLLGLALHPRFPQEPYVYAYRTVA 99 (352)
T ss_dssp CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECC-------CCCSTTCSEEEEEECTTTTTSCEEEEEEEEC
T ss_pred CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecce-------EeecCCCCceeEEECCCCCCCCEEEEEEecC
Confidence 445678888 6775554 5669999998 33322111110 01122356789999987 3544433 2
Q ss_pred -----CeEEEEEcCC
Q 041325 147 -----HKIRVWKIDN 156 (450)
Q Consensus 147 -----g~i~iw~~~~ 156 (450)
+.|..|+...
T Consensus 100 ~~~~~~~v~r~~~~~ 114 (352)
T 2ism_A 100 EGGLRNQVVRLRHLG 114 (352)
T ss_dssp TTSSEEEEEEEEECS
T ss_pred CCCCccEEEEEEeCC
Confidence 5566666653
No 347
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=89.17 E-value=10 Score=32.85 Aligned_cols=250 Identities=12% Similarity=0.065 Sum_probs=117.3
Q ss_pred CCceEEEEEeCCe-EEEEeC-CCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeeccee
Q 041325 127 GDAVKSLVVLGDK-LFSAHQ-DHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKC 204 (450)
Q Consensus 127 ~~~v~~l~~~~~~-l~s~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (450)
-...+.|+|.+++ ++.+.. .|.|++++...+.. ..+..++.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~--------------~~v~~~~~----------------------- 73 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRK--------------TELGEVPG----------------------- 73 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCE--------------EEEEECTT-----------------------
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcE--------------eeecccCc-----------------------
Confidence 4567899999887 666666 89999887655422 11111110
Q ss_pred eeecCCCceEEEEEccC---CCEEEEE-e--CCCcEEEEecCCC----------eEEE-EeecccccceEEEEEeecCCc
Q 041325 205 TWVHHVDTVSALALSSD---GSLLYST-S--WDRTFKIWRTSDF----------RCLE-SVKNAHDDAINAIVVSKSNDG 267 (450)
Q Consensus 205 ~~~~~~~~v~~~~~~~~---~~~l~~~-~--~dg~i~iwd~~~~----------~~~~-~~~~~~~~~v~~~~~~~~~~~ 267 (450)
.+.........|+++|+ +..|+.. + .++.|.-|.+..+ +.+. .+..........|.|.|++.
T Consensus 74 v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~- 152 (347)
T 3das_A 74 VSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM- 152 (347)
T ss_dssp CCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC-
T ss_pred eeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC-
Confidence 00123346788999985 3344433 2 3455555655431 1111 12212223456788987543
Q ss_pred EEEEEcC-------------CCcEEEEeCcchhhhccccchhhhhH-hhcccceEEEEEcCCCCEEEEee-CCCcEEEEE
Q 041325 268 FVYTGSA-------------DTKIKVWKKLRAALQVNKKHSLVQTL-EKHKSAVTALALSTDGTVLYSGA-CDRSILVWE 332 (450)
Q Consensus 268 ~l~~~~~-------------dg~i~vwd~~~~~~~~~~~~~~~~~~-~~~~~~i~~l~~~~~~~~l~~g~-~dg~i~vwd 332 (450)
+.++.+. .|.|.-.+....- ...........+ .++. ....++|+|+|++.++=. .|+.=.|--
T Consensus 153 Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i-p~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~ 230 (347)
T 3das_A 153 LYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP-APGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNA 230 (347)
T ss_dssp EEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB-CTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEE
T ss_pred EEEEECCCCCCccccCCCCCCCEEEEEeCCCCc-cCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEEecCCCCCceeeE
Confidence 4444332 2444444432210 000000000011 1232 346789999877655432 233222222
Q ss_pred cCCCcee----eeCCC-CCCceeeeccccCCccceEEEEEeCC-eEEEEeCCCeEEEeeCCCCccccCCCceeEEEecCC
Q 041325 333 RDQGNYI----VDGDD-DSGHMVLKGALRGHTKAILCLAVVSN-LLFSGSSDNTIRIWRRSSSVTDHQKGYSCLAVLEGH 406 (450)
Q Consensus 333 ~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~v~~~~~~~~-~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~h 406 (450)
+..+... ..... ......+...+..+......++|... ++...-..+.|....+..... ..+....+.+.
T Consensus 231 i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~g~~~~~~l~~~~l~~v~~~~~~~----~~~~e~~l~~~ 306 (347)
T 3das_A 231 IKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAEGSVWMAGLRGERLWRIPLKGTAA----AADPQAFLEGE 306 (347)
T ss_dssp ECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEETTEEEEEESTTCSEEEEEEETTEE----SSCCEEESTTT
T ss_pred EcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEcCceeeccccCCEEEEEEecCCce----ecceEEeecCC
Confidence 2333211 00000 00111112222222235577777744 555555556666566553210 01223344555
Q ss_pred CcceEEEEEEecCC
Q 041325 407 RRPVKCLTAVVDSD 420 (450)
Q Consensus 407 ~~~v~~l~~~~~~~ 420 (450)
...+..|+..||+.
T Consensus 307 ~gR~~dv~~~pDG~ 320 (347)
T 3das_A 307 YGRLRTVAPAGGDK 320 (347)
T ss_dssp SSCEEEEEEEETTE
T ss_pred CCCccEEEECCCCc
Confidence 57899999999998
No 348
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=87.54 E-value=14 Score=37.38 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=33.9
Q ss_pred CceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEee
Q 041325 211 DTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVK 249 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 249 (450)
..+.+++..++..++++-+.|+++|+|++.+++++....
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d 274 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 274 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence 356778888888899999999999999999999888754
No 349
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=85.19 E-value=19 Score=31.75 Aligned_cols=272 Identities=12% Similarity=0.133 Sum_probs=128.8
Q ss_pred ceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEe-cCCCceEEEEEe--CCeEEEEeCCCeEEEEE
Q 041325 77 YIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVAT-GNGDAVKSLVVL--GDKLFSAHQDHKIRVWK 153 (450)
Q Consensus 77 ~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~--~~~l~s~~~dg~i~iw~ 153 (450)
.|..++.-....+.-..||.|..|-....-.+-.... ........+. .....+..++.+ .+..+.-..||.|..|-
T Consensus 54 ~i~~i~~G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~-~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG 132 (389)
T 3kci_A 54 RPVQLIGGEQTLFAVTADGKLYATGYGAGGRLGIGGT-ESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWG 132 (389)
T ss_dssp CEEEEEEETTEEEEEETTSCEEEEECCGGGTTSSSSS-CCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEE
T ss_pred ceEEEEeCCCeEEEEcCCCcEEEEECCCCCCCCCCCc-CCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEe
Confidence 4666666667777777899999996543211100000 0000000011 112234444544 34466667899999997
Q ss_pred cCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeCCCc
Q 041325 154 IDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSWDRT 233 (450)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 233 (450)
....-.. +............++ . .....|..++.. ....++-..+|.
T Consensus 133 ~n~~GqL-----G~g~~~~~~~p~~v~------------------------~--l~~~~i~~va~G--~~hs~alt~~G~ 179 (389)
T 3kci_A 133 EAEDGKL-----GHGNRSPCDRPRVIE------------------------S--LRGIEVVDVAAG--GAHSACVTAAGD 179 (389)
T ss_dssp CCGGGTT-----CSSSCCCEEEEEECG------------------------G--GTTSCEEEEEEC--SSEEEEEETTSC
T ss_pred CCCCCcC-----CCCCCccCcCCeEec------------------------c--cCCCeEEEEEeC--cCeEEEEeCCCe
Confidence 5432110 000000000000000 0 011245555543 334555567888
Q ss_pred EEEEecCCC-----------eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchh-hhcc-----ccchh
Q 041325 234 FKIWRTSDF-----------RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAA-LQVN-----KKHSL 296 (450)
Q Consensus 234 i~iwd~~~~-----------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~-~~~~-----~~~~~ 296 (450)
|..|-.... .....+.......|..++... ...+.++-..||.|..|-..... +... .....
T Consensus 180 v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~-g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~ 258 (389)
T 3kci_A 180 LYTWGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGS-GDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMK 258 (389)
T ss_dssp EEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECC-SSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEE
T ss_pred EEEeCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcC-CCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEE
Confidence 888864321 111122212234566666532 12456666788999999653321 1000 00111
Q ss_pred hhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEe
Q 041325 297 VQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGS 376 (450)
Q Consensus 297 ~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~ 376 (450)
+..+ ....|..++.. ....++-..||.|+.|-....-.+-.... .....+..........|..++-...+.+...
T Consensus 259 v~~~--~~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~-~~~~~P~~v~~l~~~~v~~ia~G~~h~~al~ 333 (389)
T 3kci_A 259 IDSL--TGLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHRLGHGSD-DHVRRPRQVQGLQGKKVIAIATGSLHCVCCT 333 (389)
T ss_dssp CGGG--TTSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTCSSSC-CCEEEEEECGGGTTCCEEEEEECSSEEEEEE
T ss_pred eccc--CCCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCCC-ccccCCeEeccCCCCCEEEEEeccCeEEEEC
Confidence 1111 12346666654 34555557899999997654221111000 1111111111122345778877777777778
Q ss_pred CCCeEEEeeCCC
Q 041325 377 SDNTIRIWRRSS 388 (450)
Q Consensus 377 ~dg~v~iwd~~~ 388 (450)
.||.|+.|=.+.
T Consensus 334 ~~G~v~~wG~n~ 345 (389)
T 3kci_A 334 EDGEVYTWGDND 345 (389)
T ss_dssp TTCCEEEEECCT
T ss_pred CCCCEEEeeCCC
Confidence 999999997654
No 350
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=84.73 E-value=19 Score=31.23 Aligned_cols=85 Identities=14% Similarity=0.148 Sum_probs=50.1
Q ss_pred eeeeEEeecCCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCCe--
Q 041325 64 QCSATLKVKGNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGDK-- 139 (450)
Q Consensus 64 ~~~~~l~~~~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~-- 139 (450)
..+..+. ..-..-..|+| ||+++++--..|.|++++..+++......... +..........|+++|+.
T Consensus 22 ~~~~~va--~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~------v~~~g~~GllGia~~Pdf~~ 93 (347)
T 3das_A 22 KVLRTVA--TGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPG------VSPSGEGGLLGIALSPDYAS 93 (347)
T ss_dssp EEEEEEE--CCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTT------CCCBTTBSEEEEEECTTHHH
T ss_pred ceeEEee--cCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCc------eeecCCCCceeeEecccccc
Confidence 4445554 55667889999 78877777658999999876555322211100 012334578999999852
Q ss_pred ---EEEE---eCCCeEEEEEcCC
Q 041325 140 ---LFSA---HQDHKIRVWKIDN 156 (450)
Q Consensus 140 ---l~s~---~~dg~i~iw~~~~ 156 (450)
|+.. ..++.|.-|.+..
T Consensus 94 ~g~lYv~yt~~~~~~v~R~~~~~ 116 (347)
T 3das_A 94 DHMVYAYFTSASDNRIVRMLYDE 116 (347)
T ss_dssp HCEEEEEEECSSSEEEEEEEBCT
T ss_pred CCEEEEEEecCCCCEEEEEEeCC
Confidence 4332 2344555555543
No 351
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=84.67 E-value=16 Score=33.16 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=24.0
Q ss_pred cceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCc
Q 041325 305 SAVTALALSTDGTVLYSGACDRSILVWERDQGN 337 (450)
Q Consensus 305 ~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~ 337 (450)
...+.|+|.|+|+++++-...+.|++++..+++
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~ 59 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGS 59 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCC
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCc
Confidence 456799999999977765444578888765543
No 352
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=83.75 E-value=21 Score=31.01 Aligned_cols=57 Identities=18% Similarity=0.151 Sum_probs=31.1
Q ss_pred cceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC
Q 041325 76 SYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD 138 (450)
Q Consensus 76 ~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~ 138 (450)
.....|+| ||+.|+.+...|.|++++.+. ......... .. ...........|+++|+
T Consensus 18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~----~~-v~~~g~~g~~gia~~pd 76 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGV----PD-VWAHGQGGLLDVVLAPD 76 (353)
T ss_dssp SSEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSC----CC-CCCSTTCSEEEEEECTT
T ss_pred CCcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCC----cc-cccCCCCCceeEEECCC
Confidence 45678888 677344555679999998532 211110000 00 01122346788999985
No 353
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=83.22 E-value=3.6 Score=39.43 Aligned_cols=82 Identities=9% Similarity=0.045 Sum_probs=49.0
Q ss_pred cceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCc-ceeEEecCCCceEEEEEeCCeEEE--EeCCCeEEEE
Q 041325 76 SYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDH-ANVVATGNGDAVKSLVVLGDKLFS--AHQDHKIRVW 152 (450)
Q Consensus 76 ~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~l~~~~~~l~s--~~~dg~i~iw 152 (450)
..|.|+.++..+++|-+.|.++|+|++.+++++.......... ....+.+...+-.-+...+..+++ -..+|..++|
T Consensus 222 ~~Is~~~~~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~~~~~~~~s~L~~~~~~~~~Lrl~~~~lv~y~P~~~G~Fk~~ 301 (729)
T 3f7f_A 222 SVISCKLFHERYLIVLTQNCHLKIWDLTSFTLIQDYDMVSQSDSDPSHFRKVEAVGEYLSLYNNTLVTLLPLENGLFQMG 301 (729)
T ss_dssp CEEEEEEETTTEEEEEETTCEEEEEETTTTEEEEEEETTTTSCCCSSCCCCCCSCCCCEEESSSEEEEEETTTTCEEEEE
T ss_pred ceEEEeccCCcEEEEEEcCCeEEEEEcCCCceEEeeccccCccccccccCcccCcchhHhheeeEEEEEecCCCCeEEEE
Confidence 5688888899999999999999999999999776644421110 000011111111222222333222 2356899999
Q ss_pred EcCCC
Q 041325 153 KIDNN 157 (450)
Q Consensus 153 ~~~~~ 157 (450)
.+...
T Consensus 302 ~l~~~ 306 (729)
T 3f7f_A 302 TLLVD 306 (729)
T ss_dssp EEEC-
T ss_pred EEEEc
Confidence 98654
No 354
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=83.01 E-value=25 Score=31.32 Aligned_cols=271 Identities=9% Similarity=0.030 Sum_probs=134.9
Q ss_pred CcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecC--CCCcceeEEecCCCceEEEEEeCCeEEEEeCCCeEEEE
Q 041325 75 SSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTD--VGDHANVVATGNGDAVKSLVVLGDKLFSAHQDHKIRVW 152 (450)
Q Consensus 75 ~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~--~~~~~~~~~~~h~~~v~~l~~~~~~l~s~~~dg~i~iw 152 (450)
...|..++.-....+.-..||.|+.|-......+-..... ....+.. . .-...|..++...+..+.-..||.|..|
T Consensus 58 ~~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~-v-~l~~~i~~va~G~~hs~alt~~G~v~~w 135 (413)
T 1a12_A 58 PEDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGK-V-ELQEKVVQVSAGDSHTAALTDDGRVFLW 135 (413)
T ss_dssp SSCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCSTTGGGSCEE-C-CCCSCEEEEEECSSEEEEEETTSCEEEE
T ss_pred CCCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCCccccCCeE-e-cCCCcEEEEecCCCeEEEEcCCCcEEEe
Confidence 3678888886666666778999999976542211110000 0000100 1 1134788888777777777889999999
Q ss_pred Ec--CCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEccCCCEEEEEeC
Q 041325 153 KI--DNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSSDGSLLYSTSW 230 (450)
Q Consensus 153 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 230 (450)
-. ...-..- ..... ..... +... .....|..++... ...+.-..
T Consensus 136 G~~~n~~GqlG--~~~~~-~~~~~---------------------------P~~v--~~~~~i~~ia~G~--~hs~alt~ 181 (413)
T 1a12_A 136 GSFRDNNGVIG--LLEPM-KKSMV---------------------------PVQV--QLDVPVVKVASGN--DHLVMLTA 181 (413)
T ss_dssp ECEEETTEEEE--SSBBT-BCEEE---------------------------EEEE--CCSSCEEEEEECS--SEEEEEET
T ss_pred eCCcCCCCccC--cCCcc-ccccC---------------------------CEEe--cCCCCEEEEEecC--ceEEEEcC
Confidence 75 2221000 00000 00000 0000 1123455555543 34455567
Q ss_pred CCcEEEEecCCCeEE----------------------EEeecc-----cccceEEEEEeecCCcEEEEEcCCCcEEEEeC
Q 041325 231 DRTFKIWRTSDFRCL----------------------ESVKNA-----HDDAINAIVVSKSNDGFVYTGSADTKIKVWKK 283 (450)
Q Consensus 231 dg~i~iwd~~~~~~~----------------------~~~~~~-----~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~ 283 (450)
||.|..|-....-.+ ..+... ....|..|+.- ..+.++-..+|.|..|-.
T Consensus 182 ~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G---~~hs~alt~~G~v~~wG~ 258 (413)
T 1a12_A 182 DGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCG---AYFTFAISHEGHVYGFGL 258 (413)
T ss_dssp TSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEE---TTEEEEEETTCCEEEEEC
T ss_pred CCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeC---CCEEEEEeCCCCEEEEeC
Confidence 788888865431110 001100 22456666664 334455568899999975
Q ss_pred cchh-hhcc-----ccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccC
Q 041325 284 LRAA-LQVN-----KKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG 357 (450)
Q Consensus 284 ~~~~-~~~~-----~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (450)
.... +... .....+..+......|..++.. ....++-..||.|+.|-....-.+-..........+ ..+..
T Consensus 259 n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G--~~hs~al~~~G~v~~wG~n~~GqLG~g~~~~~~~~P-~~v~~ 335 (413)
T 1a12_A 259 SNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGG--QHHTVCMDSEGKAYSLGRAEYGRLGLGEGAEEKSIP-TLISR 335 (413)
T ss_dssp CTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEEC--SSEEEEEETTSCEEEEECCGGGTTCSCTTCCCEEEE-EECCS
T ss_pred CCCcCCCCCCCCcccccEEchhccCCCceEEEEecc--cceEEEEeCCCCEEEeeCCCCCccCCCCCCccccCC-EEecc
Confidence 4321 1000 0111122222212346666654 345555667999999976542111100000111111 11111
Q ss_pred CccceEEEEEeCCeEEEEeCCCeEEEeeCCC
Q 041325 358 HTKAILCLAVVSNLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 358 ~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~ 388 (450)
-..|..++-...+.+.-..||.|+.|=...
T Consensus 336 -l~~v~~v~~G~~hs~alt~~G~v~~wG~n~ 365 (413)
T 1a12_A 336 -LPAVSSVACGASVGYAVTKDGRVFAWGMGT 365 (413)
T ss_dssp -SSSEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred -cCceeEEEECcceEEEEeCCCCEEEecCCC
Confidence 126788877777777778999999996553
No 355
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=82.12 E-value=30 Score=31.56 Aligned_cols=277 Identities=10% Similarity=0.087 Sum_probs=133.4
Q ss_pred CcceEEEEEeCCEEEEeeCCCcEEEecCCCCCceeeeecCCC----------------------CcceeEEec-------
Q 041325 75 SSYIPSLAIAGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVG----------------------DHANVVATG------- 125 (450)
Q Consensus 75 ~~~v~~~~~d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~----------------------~~~~~~~~~------- 125 (450)
...|..++.-+...+.-..||.|+.|-....-.+-....... .........
T Consensus 66 ~~~i~~va~G~~Ht~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~v~~~~l~~~~ 145 (473)
T 3of7_A 66 EAKIISFAVGGMHTLALDEESNVWSWGCNDVGALGRDTSNAKEQLKDMDADDSSDDEDGDLNELESTPAKIPRESFPPLA 145 (473)
T ss_dssp TTCEEEEEECSSEEEEEETTCCEEEEECCTTSTTCSCCC---------------------CCHHHHSCEECCGGGCHHHH
T ss_pred CCCEEEEEeCCCeEEEEecCCeEEEeECCCCCCCCCCCcccccccccccccccCccccccccccccCceecccccCCccc
Confidence 357888888777777777899999997644321110000000 000011111
Q ss_pred CCCceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceee
Q 041325 126 NGDAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCT 205 (450)
Q Consensus 126 h~~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (450)
....|..|+......+.-..||.|..|-......-.......... .......++ .
T Consensus 146 ~~~~i~~va~G~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~-~~~~P~~v~------------------------~ 200 (473)
T 3of7_A 146 EGHKVVQLAATDNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIK-IQKTPWKVP------------------------T 200 (473)
T ss_dssp TTCCEEEEEECSSEEEEEETTSCEEEEECEEETTEEEESBTTTBS-CEEEEEECC------------------------C
T ss_pred CCCcEEEEEccCCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCc-cccCcEEcc------------------------c
Confidence 235788888877777777889999999852110000000000000 000000000 0
Q ss_pred eecCCCceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEE----------ee--cccccceEEEEEeecCCcEEEEEc
Q 041325 206 WVHHVDTVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLES----------VK--NAHDDAINAIVVSKSNDGFVYTGS 273 (450)
Q Consensus 206 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~----------~~--~~~~~~v~~~~~~~~~~~~l~~~~ 273 (450)
.....|..++.. ....+.-..+|.|..|-....-.+.. +. ......|..|+. +....++-.
T Consensus 201 --l~~~~i~~va~G--~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~---G~~hs~alt 273 (473)
T 3of7_A 201 --FSKYNIVQLAPG--KDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIAS---GENHCFALT 273 (473)
T ss_dssp --CCSSCEEEEEEC--SSEEEEEETTSCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEE---CSSEEEEEE
T ss_pred --cCCCCEEEEEec--CCeEEEEeCCCeEEEEeCCCCCCCCCCccccccccccCceecCCcceEEEec---CCCeEEEEe
Confidence 011236666554 33455556788888886543211100 00 001135666655 344666666
Q ss_pred CCCcEEEEeCcch-hhhccc---------cchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCC
Q 041325 274 ADTKIKVWKKLRA-ALQVNK---------KHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGD 343 (450)
Q Consensus 274 ~dg~i~vwd~~~~-~~~~~~---------~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~ 343 (450)
.+|.|..|-.... ++.... ....+.. .....|..++.. ...-++-..||.|+.|-....-.+-...
T Consensus 274 ~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~P~~v~~--~~~~~i~~ia~G--~~hs~~lt~~G~v~~wG~n~~GqLG~~~ 349 (473)
T 3of7_A 274 KDNKLVSWGLNQFGQCGVSEDVEDGALVTKPKRLAL--PDNVVIRSIAAG--EHHSLILSQDGDLYSCGRLDMFEVGIPK 349 (473)
T ss_dssp TTSCEEEEEECTTSTTCCCSCCCTTCEEEEEEECCC--CTTCCEEEEEEC--SSEEEEEETTSCEEEEEECTTCTTCCCG
T ss_pred cCCCEEEeCCCCCCCcCCCCcccCCceeeccccccc--cCCccEEEEEeC--CCeEEEEeCCCeEEEEECCCCCccCCCc
Confidence 7899999965321 111000 0001111 112346666654 3344555678999999765321110000
Q ss_pred ------------CCCCceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCC
Q 041325 344 ------------DDSGHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 344 ------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~ 388 (450)
...........+.. ...|..++-.....++-..||.|+.|=...
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~P~~v~~-~~~v~~Ia~G~~hs~al~~~G~vy~wG~n~ 405 (473)
T 3of7_A 350 DNLPEYTYKDVHGKARAVPLPTKLNN-VPKFKSVAAGSHHSVAVAQNGIAYSWGFGE 405 (473)
T ss_dssp GGCCTTCEECTTSCEEEEEEEEECCS-SCCEEEEEECSSEEEEEETTSCEEEEECCT
T ss_pred cccccccccccCCceeeeccCcccCC-CCceEEEEeCCCeEEEEeCCCcEEEeeCCC
Confidence 00000001111111 126777777777777778999999996553
No 356
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=78.39 E-value=11 Score=36.23 Aligned_cols=82 Identities=13% Similarity=0.039 Sum_probs=46.6
Q ss_pred cceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCCeEEEEe--CCCeEE
Q 041325 305 SAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSNLLFSGS--SDNTIR 382 (450)
Q Consensus 305 ~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~--~dg~v~ 382 (450)
..|.++.+ +..++++-+.|.++|+|++.+++++...+-..........+.+...+-.-+...+.++++=+ .+|..+
T Consensus 222 ~~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL~~~~~~~~s~L~~~~~~~~~Lrl~~~~lv~y~P~~~G~Fk 299 (729)
T 3f7f_A 222 SVISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDMVSQSDSDPSHFRKVEAVGEYLSLYNNTLVTLLPLENGLFQ 299 (729)
T ss_dssp CEEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEETTTTSCCCSSCCCCCCSCCCCEEESSSEEEEEETTTTCEEE
T ss_pred ceEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeeccccCccccccccCcccCcchhHhheeeEEEEEecCCCCeEE
Confidence 34665555 47899999999999999999999876544421110000112221111111122235444333 568899
Q ss_pred EeeCCC
Q 041325 383 IWRRSS 388 (450)
Q Consensus 383 iwd~~~ 388 (450)
+|++..
T Consensus 300 ~~~l~~ 305 (729)
T 3f7f_A 300 MGTLLV 305 (729)
T ss_dssp EEEEEC
T ss_pred EEEEEE
Confidence 998864
No 357
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=76.91 E-value=14 Score=33.61 Aligned_cols=53 Identities=13% Similarity=0.110 Sum_probs=34.2
Q ss_pred ceEEEEEccCCC-EEEEEeCCCcEEEEecCCCe---EEEEeec--------ccccceEEEEEeec
Q 041325 212 TVSALALSSDGS-LLYSTSWDRTFKIWRTSDFR---CLESVKN--------AHDDAINAIVVSKS 264 (450)
Q Consensus 212 ~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~---~~~~~~~--------~~~~~v~~~~~~~~ 264 (450)
....|+|.|++. .|+++...|.|++++..... .+..+.. ........|+++|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 567899999986 45566788999999754321 1222210 11356788999874
No 358
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=76.62 E-value=37 Score=29.46 Aligned_cols=74 Identities=14% Similarity=0.125 Sum_probs=41.0
Q ss_pred CCCcceEEEEE--eCCEEEEeeCCCcEEEecCCCCCceeeeecCCCCcceeEEecCCCceEEEEEeCC-----eEEEEeC
Q 041325 73 GNSSYIPSLAI--AGKLLYGGSSNGEIRAWNRDPNNYVNITSTDVGDHANVVATGNGDAVKSLVVLGD-----KLFSAHQ 145 (450)
Q Consensus 73 ~h~~~v~~~~~--d~~~l~tgs~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~-----~l~s~~~ 145 (450)
..-.....|+| ||+ |+.+..+|.|++++. +++ ....... +..........|+++|+ .|+.+..
T Consensus 26 ~~l~~P~~ia~~pdG~-l~V~e~~g~I~~~d~-~G~-~~~~~~~-------v~~~g~~g~~gia~~pdf~~~g~lyv~~~ 95 (354)
T 3a9g_A 26 SDLEVPWSIAPLGGGR-YLVTERPGRLVLISP-SGK-KLVASFD-------VANVGEAGLLGLALHPEFPKKSWVYLYAS 95 (354)
T ss_dssp CSCSCEEEEEEEETTE-EEEEETTTEEEEECS-SCE-EEEEECC-------CCCSTTCSEEEEEECTTTTTSCEEEEEEE
T ss_pred CCCCCCeEEEEcCCCe-EEEEeCCCEEEEEeC-CCc-eEeeccc-------eeecCCCceeeEEeCCCCCcCCEEEEEEe
Confidence 33456778888 566 555566699999973 333 2111100 01122346789999986 3544432
Q ss_pred ----C----CeEEEEEcCC
Q 041325 146 ----D----HKIRVWKIDN 156 (450)
Q Consensus 146 ----d----g~i~iw~~~~ 156 (450)
+ +.|..|+...
T Consensus 96 ~~~~~~~~~~~v~r~~~~~ 114 (354)
T 3a9g_A 96 YFAEGGHIRNRVIRGRLDG 114 (354)
T ss_dssp EECGGGCEEEEEEEEEECS
T ss_pred ccCCCCCcceEEEEEEECC
Confidence 2 4566666553
No 359
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=73.91 E-value=16 Score=37.77 Aligned_cols=38 Identities=24% Similarity=0.367 Sum_probs=32.5
Q ss_pred ceEEEEEccCCCEEEEEeCCCcEEEEecCCCeEEEEee
Q 041325 212 TVSALALSSDGSLLYSTSWDRTFKIWRTSDFRCLESVK 249 (450)
Q Consensus 212 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 249 (450)
.+.+++..++..++++-+.|+++|+|++.+++++....
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~D 276 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE 276 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeec
Confidence 45566677788899999999999999999999988764
No 360
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=69.63 E-value=19 Score=36.31 Aligned_cols=38 Identities=11% Similarity=0.088 Sum_probs=32.4
Q ss_pred cceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeC
Q 041325 305 SAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDG 342 (450)
Q Consensus 305 ~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~ 342 (450)
..+.+++..++..++++-+.|+++|+|++.+++++...
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 35677778888899999999999999999999987643
No 361
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=66.75 E-value=76 Score=28.82 Aligned_cols=30 Identities=13% Similarity=0.123 Sum_probs=23.2
Q ss_pred cceEEEEEcCCCC-EEEEeeCCCcEEEEEcC
Q 041325 305 SAVTALALSTDGT-VLYSGACDRSILVWERD 334 (450)
Q Consensus 305 ~~i~~l~~~~~~~-~l~~g~~dg~i~vwd~~ 334 (450)
...+.|+|.|||. .|+++...|.|++++..
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~ 44 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPE 44 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence 4468899999996 45566788999999754
No 362
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=64.84 E-value=63 Score=27.25 Aligned_cols=137 Identities=15% Similarity=0.166 Sum_probs=72.9
Q ss_pred EEccCCCEEEEEe----CCCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhccc
Q 041325 217 ALSSDGSLLYSTS----WDRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNK 292 (450)
Q Consensus 217 ~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~ 292 (450)
.++++++.|+-.. .+..|...++... ....+. .+.. ..+++.++.+..+......|...++..+..
T Consensus 110 ~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs-~~~~lt-~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~---- 179 (302)
T 3s25_A 110 YASLIGNYIYYLHYDTQTATSLYRIRIDGE-EKKKIK-NHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSE---- 179 (302)
T ss_dssp EEEEETTEEEEEEESSSSCEEEEEEETTSC-CCEEEE-SSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEE----
T ss_pred EEEEeCCEEEEEeecCCCCceEEEEECCCC-CeEEEe-CCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCE----
Confidence 5677777777665 3445666666533 333443 1221 334555776666655567788877755430
Q ss_pred cchhhhhHhhcccceEEEEEcCCCCEEEEeeCC--CcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEEeCC
Q 041325 293 KHSLVQTLEKHKSAVTALALSTDGTVLYSGACD--RSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAVVSN 370 (450)
Q Consensus 293 ~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 370 (450)
+.+ +. +... ..+.|++.+|+-...+ ..|..-++...... .+. ...+..+++.++
T Consensus 180 --~~l--~~---~~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~--------------~Lt--~~~~~~~~~~g~ 235 (302)
T 3s25_A 180 --ALF--YD---CNCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNPV--------------VLT--EANIEHYNVYGS 235 (302)
T ss_dssp --EEE--EC---SCEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCCE--------------ECS--CSCEEEEEEETT
T ss_pred --EEE--eC---CCcc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCeE--------------EEe--CCCcceEEECCC
Confidence 011 11 1222 3456888888776543 35666666644321 111 123355777787
Q ss_pred eEEEEe--CCCeEEEeeCC
Q 041325 371 LLFSGS--SDNTIRIWRRS 387 (450)
Q Consensus 371 ~l~s~~--~dg~v~iwd~~ 387 (450)
+|.-+. ..+.|..-++.
T Consensus 236 ~Iy~~~~~~~~~i~~~~~D 254 (302)
T 3s25_A 236 LIFYQRGGDNPALCVVKND 254 (302)
T ss_dssp EEEEEECSSSCEEEEEETT
T ss_pred EEEEEECCCCcEEEEEECC
Confidence 666543 23556655555
No 363
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=63.66 E-value=20 Score=33.34 Aligned_cols=82 Identities=11% Similarity=0.094 Sum_probs=54.9
Q ss_pred ccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc-----chhhhhHhhcccceEEEEEcCCCCEEEEeeCCCc
Q 041325 253 DDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK-----HSLVQTLEKHKSAVTALALSTDGTVLYSGACDRS 327 (450)
Q Consensus 253 ~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~-----~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~ 327 (450)
......+.++|++..+++.|-.+.++.++|++.-....... .......+ -.......+|.++|+...+-.-|..
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSq 400 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQ 400 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTE
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecce
Confidence 34567788899877678888889999999987543111100 00111111 2345677899999966666778999
Q ss_pred EEEEEcCC
Q 041325 328 ILVWERDQ 335 (450)
Q Consensus 328 i~vwd~~~ 335 (450)
|..|++..
T Consensus 401 vvkWni~~ 408 (638)
T 3sbq_A 401 VVKWNMEE 408 (638)
T ss_dssp EEEEEHHH
T ss_pred EEEEeccH
Confidence 99999875
No 364
>1a12_A RCC1, regulator of chromosome condensation 1; guanine nucleotide exchange factor, GEF, RAN, RAS-like nuclear GTP binding protein; 1.70A {Homo sapiens} SCOP: b.69.5.1 PDB: 1i2m_B
Probab=62.20 E-value=85 Score=27.83 Aligned_cols=221 Identities=10% Similarity=0.006 Sum_probs=108.3
Q ss_pred CceEEEEEeCCeEEEEeCCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeee
Q 041325 128 DAVKSLVVLGDKLFSAHQDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWV 207 (450)
Q Consensus 128 ~~v~~l~~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (450)
..|..++......+.-..||.|..|-....-..-...... .. ...| ...
T Consensus 59 ~~i~~va~G~~hs~~l~~~G~v~~wG~n~~GqLG~~~~~~--~~-----~~~P----------------------~~v-- 107 (413)
T 1a12_A 59 EDVVQAEAGGMHTVCLSKSGQVYSFGCNDEGALGRDTSVE--GS-----EMVP----------------------GKV-- 107 (413)
T ss_dssp SCEEEEEECSSEEEEEETTSCEEEEECCTTSTTCSCCCST--TG-----GGSC----------------------EEC--
T ss_pred CCeEEEEeCCCeEEEEcCCCCEEEEECCCCCCCCCCCCCC--cc-----ccCC----------------------eEe--
Confidence 5788888777776677789999999865431100000000 00 0000 000
Q ss_pred cCCCceEEEEEccCCCEEEEEeCCCcEEEEec--CC-CeE-----------EEEeecccccceEEEEEeecCCcEEEEEc
Q 041325 208 HHVDTVSALALSSDGSLLYSTSWDRTFKIWRT--SD-FRC-----------LESVKNAHDDAINAIVVSKSNDGFVYTGS 273 (450)
Q Consensus 208 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~--~~-~~~-----------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~ 273 (450)
.-...|..++.. ....+.-..||.|..|-. .. ++. ...+ .....|..|+.- ..+.+.-.
T Consensus 108 ~l~~~i~~va~G--~~hs~alt~~G~v~~wG~~~n~~GqlG~~~~~~~~~~P~~v--~~~~~i~~ia~G---~~hs~alt 180 (413)
T 1a12_A 108 ELQEKVVQVSAG--DSHTAALTDDGRVFLWGSFRDNNGVIGLLEPMKKSMVPVQV--QLDVPVVKVASG---NDHLVMLT 180 (413)
T ss_dssp CCCSCEEEEEEC--SSEEEEEETTSCEEEEECEEETTEEEESSBBTBCEEEEEEE--CCSSCEEEEEEC---SSEEEEEE
T ss_pred cCCCcEEEEecC--CCeEEEEcCCCcEEEeeCCcCCCCccCcCCccccccCCEEe--cCCCCEEEEEec---CceEEEEc
Confidence 011245555443 234444566778888764 21 110 1111 123456666653 44666667
Q ss_pred CCCcEEEEeCcch-hhhccccc--------hhhhhHh-----h------cccceEEEEEcCCCCEEEEeeCCCcEEEEEc
Q 041325 274 ADTKIKVWKKLRA-ALQVNKKH--------SLVQTLE-----K------HKSAVTALALSTDGTVLYSGACDRSILVWER 333 (450)
Q Consensus 274 ~dg~i~vwd~~~~-~~~~~~~~--------~~~~~~~-----~------~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~ 333 (450)
.||.|..|-.... ++...... .....+. . ....|..++... .+-++-..||.|+.|-.
T Consensus 181 ~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~~~P~~v~~~~~g~~~~~~i~~ia~G~--~hs~alt~~G~v~~wG~ 258 (413)
T 1a12_A 181 ADGDLYTLGCGEQGQLGRVPELFANRGGRQGLERLLVPKCVMLKSRGSRGHVRFQDAFCGA--YFTFAISHEGHVYGFGL 258 (413)
T ss_dssp TTSCEEEEECCTTSTTCSCGGGTSSSCGGGGHHHHHSCEECCCBCSSCCSBCCEEEEEEET--TEEEEEETTCCEEEEEC
T ss_pred CCCCEEEeeCCCCCccCCCccccccccccccccccccCceEeeccccccCCccEEEEEeCC--CEEEEEeCCCCEEEEeC
Confidence 8899999965432 11000000 0000000 0 124566666643 34455568999999987
Q ss_pred CCCceeeeCCCCC-CceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCCC
Q 041325 334 DQGNYIVDGDDDS-GHMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 334 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~ 388 (450)
...-.+-...... ........+......|..++-...+.+.-..||.|+.|-...
T Consensus 259 n~~gqLG~~~~~~~~~P~~v~~l~~~~~~v~~ia~G~~hs~al~~~G~v~~wG~n~ 314 (413)
T 1a12_A 259 SNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYSLGRAE 314 (413)
T ss_dssp CTTSTTSCSSCSCEEEEEECGGGCCTTCCEEEEEECSSEEEEEETTSCEEEEECCG
T ss_pred CCCcCCCCCCCCcccccEEchhccCCCceEEEEecccceEEEEeCCCCEEEeeCCC
Confidence 6432111100000 001111122222245777877777777778899999996543
No 365
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=59.79 E-value=76 Score=29.69 Aligned_cols=73 Identities=12% Similarity=0.063 Sum_probs=49.9
Q ss_pred CceEEEEEccCCCEEEEEe-CCCcEEEEecCCCeE-------------EEEeecccccceEEEEEeecCCcEEEEEcCCC
Q 041325 211 DTVSALALSSDGSLLYSTS-WDRTFKIWRTSDFRC-------------LESVKNAHDDAINAIVVSKSNDGFVYTGSADT 276 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~-------------~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg 276 (450)
.....+..+|||++++.++ .+.++.++|++.... ..... ..-.....+|.+.+ +...+-.-|.
T Consensus 323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e--~GlGPlHt~Fd~~G-~aYTtlfidS 399 (638)
T 3sbq_A 323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE--LGLGPLHTTFDGRG-NAYTTLFIDS 399 (638)
T ss_dssp SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--CCSCEEEEEECSSS-EEEEEETTTT
T ss_pred CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--CCCcccEEEECCCC-ceEeeeeecc
Confidence 3445678899999988776 578999999874211 22222 33456778888633 3455666899
Q ss_pred cEEEEeCcch
Q 041325 277 KIKVWKKLRA 286 (450)
Q Consensus 277 ~i~vwd~~~~ 286 (450)
.|.-|++...
T Consensus 400 qvvkWni~~a 409 (638)
T 3sbq_A 400 QVVKWNMEEA 409 (638)
T ss_dssp EEEEEEHHHH
T ss_pred eEEEEeccHH
Confidence 9999998653
No 366
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=55.40 E-value=89 Score=25.92 Aligned_cols=168 Identities=9% Similarity=-0.009 Sum_probs=93.7
Q ss_pred CCceEEEEEccCCCEEEEEeCCCcEEE---EecCCCeEEEEeecccccceEEEEEeec-CCcEEEEEcCCCcEEEEeCcc
Q 041325 210 VDTVSALALSSDGSLLYSTSWDRTFKI---WRTSDFRCLESVKNAHDDAINAIVVSKS-NDGFVYTGSADTKIKVWKKLR 285 (450)
Q Consensus 210 ~~~v~~~~~~~~~~~l~~~~~dg~i~i---wd~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~i~vwd~~~ 285 (450)
.+.+..+......+.|+.-+.+|.++- |++....... + ......|..+.. .. .+..++..+.+|.++-..+..
T Consensus 23 gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-l-l~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~ 99 (276)
T 3no0_A 23 KAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-L-KSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAE 99 (276)
T ss_dssp CCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-C-SSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGG
T ss_pred CCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-c-CCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHH
Confidence 345666555555556767777887764 3443332221 2 235566777654 32 355889999999999988654
Q ss_pred hhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEE
Q 041325 286 AALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL 365 (450)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 365 (450)
-. . .........+.. ...+..+........++..+..|.+..++...-... .....+. ....+.. ...|.++
T Consensus 100 ~~-~-~~~G~~~i~lke-gD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~--gR~a~Gv--~~i~L~~-~d~vv~~ 171 (276)
T 3no0_A 100 FE-Y-KAQGMPIIKLTE-GDEVVSIASSVDETHILLFTKKGRVARFSVREVPPS--TPGARGV--QGIKLEK-NDETSGL 171 (276)
T ss_dssp TT-T-CSTTEECSCCCT-TCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBC--CTTCCCE--ECCCCCT-TCCEEEE
T ss_pred hh-h-hcCCeEEEecCC-CCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCc--CCCCCCE--EEEccCC-CCEEEEE
Confidence 32 1 111111122222 345555555556668888899999988876542211 0000111 1112322 2445444
Q ss_pred EEe--CCeEEEEeCCCeEEEeeCCC
Q 041325 366 AVV--SNLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 366 ~~~--~~~l~s~~~dg~v~iwd~~~ 388 (450)
... ++.++..+..|.++...+..
T Consensus 172 ~~~~~~~~ll~~T~~G~~kr~~~~e 196 (276)
T 3no0_A 172 RIWNGEPYLLVITAKGRVKKISHEE 196 (276)
T ss_dssp EEESSCSEEEEEETTSCEEEEEGGG
T ss_pred EEeCCCCEEEEEeCCCcEEEeEHHH
Confidence 433 34888899999998887654
No 367
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=50.91 E-value=1.3e+02 Score=26.35 Aligned_cols=160 Identities=13% Similarity=0.082 Sum_probs=85.2
Q ss_pred EccCCCEEEEEeCCCcEEEEecCCC-------eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEe---Ccchh
Q 041325 218 LSSDGSLLYSTSWDRTFKIWRTSDF-------RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWK---KLRAA 287 (450)
Q Consensus 218 ~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd---~~~~~ 287 (450)
+-++..++++.+.+|.|+=-.+.+. +-+..+.......+..+......+ .++..+..|.+.-+. +....
T Consensus 3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d-~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHD-TLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTC-EEEEEETTSEEEEEEGGGSCBCC
T ss_pred cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCC-EEEEEeCCCeEEEEEHHHCcCCC
Confidence 3467788999999999997654321 112222223455666666554343 566666777766554 33221
Q ss_pred hhccccchhhh---hHhhcccceEEEEEcC---CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccc
Q 041325 288 LQVNKKHSLVQ---TLEKHKSAVTALALST---DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKA 361 (450)
Q Consensus 288 ~~~~~~~~~~~---~~~~~~~~i~~l~~~~---~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (450)
.. .....+. .+. ....|..+.... ++.+|+.++..|.++...+..-... ...-.....+.. ...
T Consensus 82 r~--a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~------~~~G~~ai~L~~-~d~ 151 (370)
T 3l6v_A 82 SN--ARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFR------LARGKIAINLDE-GDA 151 (370)
T ss_dssp TT--SCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSC------CTTCEESSCCCT-TCC
T ss_pred cc--cCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcc------cCCceEEEEeCC-CCE
Confidence 00 1111111 122 234555554332 4568999999999999887643211 001111122332 233
Q ss_pred eEEEEE-e-CCeEEEEeCCCeEEEeeCCC
Q 041325 362 ILCLAV-V-SNLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 362 v~~~~~-~-~~~l~s~~~dg~v~iwd~~~ 388 (450)
+..+.. . .+.++..+.+|.+..++...
T Consensus 152 lv~v~~~~~~~~i~l~T~~G~~irf~~~~ 180 (370)
T 3l6v_A 152 LVGVALTDGDRDVLLFASNGKTVRFGEST 180 (370)
T ss_dssp EEEEEEECSCCEEEEEETTSEEEEEEGGG
T ss_pred EEEEEEeCCCceEEEEeCCCeEEEEEccc
Confidence 333333 3 34778888888887776543
No 368
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=44.45 E-value=15 Score=38.00 Aligned_cols=37 Identities=11% Similarity=0.082 Sum_probs=30.8
Q ss_pred ceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeC
Q 041325 306 AVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDG 342 (450)
Q Consensus 306 ~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~ 342 (450)
.+.+++..++..++++-+.|+++|+|++.+++++...
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 4455666778899999999999999999999987653
No 369
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=43.10 E-value=1.7e+02 Score=25.54 Aligned_cols=103 Identities=11% Similarity=0.030 Sum_probs=51.0
Q ss_pred CCEEEEEeCCCcEEEEecCC-CeEEEEe-ecccccceEEEEEeecCCcEEEEEcCCC----cEEEEeCcchhhhccccch
Q 041325 222 GSLLYSTSWDRTFKIWRTSD-FRCLESV-KNAHDDAINAIVVSKSNDGFVYTGSADT----KIKVWKKLRAALQVNKKHS 295 (450)
Q Consensus 222 ~~~l~~~~~dg~i~iwd~~~-~~~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~dg----~i~vwd~~~~~~~~~~~~~ 295 (450)
...|++|...| +.+++... ++.-..+ .......|.+|++.|.+.+.+.+++..| .|...+ .+. ..+.
T Consensus 22 ~g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~--D~G----~tW~ 94 (394)
T 3b7f_A 22 PVMLLVATIKG-AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRSD--DGG----GNWT 94 (394)
T ss_dssp CCEEEEEETTE-EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEES--STT----SCCE
T ss_pred CCEEEEEecCc-eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCCCccEEEeC--CCC----CCce
Confidence 34677777777 44454332 2211111 1123467999999875455666665555 343332 211 1111
Q ss_pred hhhh---Hhh--------cccceEEEEEcC-C-CCEEEEeeCCCcEEEE
Q 041325 296 LVQT---LEK--------HKSAVTALALST-D-GTVLYSGACDRSILVW 331 (450)
Q Consensus 296 ~~~~---~~~--------~~~~i~~l~~~~-~-~~~l~~g~~dg~i~vw 331 (450)
.+.. +.. ....|.++++.| + ...|.++...+.|...
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S 143 (394)
T 3b7f_A 95 EATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRS 143 (394)
T ss_dssp ECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEE
T ss_pred ECCccccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEE
Confidence 1110 110 113577899987 2 4566666666655544
No 370
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=40.96 E-value=1.2e+02 Score=29.78 Aligned_cols=63 Identities=11% Similarity=0.124 Sum_probs=38.2
Q ss_pred CCceEEEEEccC-CCEEEEEeCCCcEEEEecCCCeEEEEeecc------cccceEEEEEeecCCcEEEEEc
Q 041325 210 VDTVSALALSSD-GSLLYSTSWDRTFKIWRTSDFRCLESVKNA------HDDAINAIVVSKSNDGFVYTGS 273 (450)
Q Consensus 210 ~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~ 273 (450)
.+.|.+|+++|. ...++++...+.|...+- .++.=..+... ....+.+|++.|.+.+.++++.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~D-gG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~ 83 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWDA-GTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQ 83 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEET-TTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEecC-CCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEe
Confidence 458999999994 566777777776655542 23322222211 1346999999875545555544
No 371
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=40.62 E-value=1.7e+02 Score=24.74 Aligned_cols=204 Identities=11% Similarity=0.078 Sum_probs=99.4
Q ss_pred CCCEEEEEeCCCcEEEEecCCCeEEEE-------eecccccceEEEEEeecCCcEEEEEcCCCcEEEEeC---cchhhhc
Q 041325 221 DGSLLYSTSWDRTFKIWRTSDFRCLES-------VKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKK---LRAALQV 290 (450)
Q Consensus 221 ~~~~l~~~~~dg~i~iwd~~~~~~~~~-------~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~---~~~~~~~ 290 (450)
+...+++.+.+|.|+--.+.+.+.... +.....+.+..+.... ....++..+..|.++-+.. .....
T Consensus 2 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~-~~~~ll~fT~~G~~~~~~~~elp~~~~-- 78 (307)
T 1zi0_A 2 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVAN-THDHILCFSSRGRVYSMKVYQLPEATR-- 78 (307)
T ss_dssp CCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCCCCS--
T ss_pred CCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEEC-CCCEEEEEECCCEEEEEEhhHCcCCCC--
Confidence 456788889999998777655332221 1112334444444444 3336666677787655543 22210
Q ss_pred cccchhhh---hHhhcccceEEEEEc---CCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEE
Q 041325 291 NKKHSLVQ---TLEKHKSAVTALALS---TDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILC 364 (450)
Q Consensus 291 ~~~~~~~~---~~~~~~~~i~~l~~~---~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 364 (450)
.....++. .+. ....|..+... .++.+++..+.+|.++...+..-... ...-.....+..+ ..+..
T Consensus 79 ~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~------~r~G~~~i~l~~~-d~lv~ 150 (307)
T 1zi0_A 79 GARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRL------RTAGKVAIKLVDG-DELIG 150 (307)
T ss_dssp SSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTC------CTTCEESSCCCTT-CCEEE
T ss_pred CCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhcc------ccCCeEEEEECCC-CEEEE
Confidence 01111111 122 23455555432 35668889999999999887532111 0011111223333 34444
Q ss_pred EEE-e-CCeEEEEeCCCeEEEeeCCCCccc-cCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccC
Q 041325 365 LAV-V-SNLLFSGSSDNTIRIWRRSSSVTD-HQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLD 441 (450)
Q Consensus 365 ~~~-~-~~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~D 441 (450)
+.. . .+.++..+.+|.+..++...-... ..........+. ....|.++....++. .+++.+..
T Consensus 151 ~~~~~~~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~-------------~ll~~T~~ 216 (307)
T 1zi0_A 151 VDLTSGEDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDG-------------AILTATQN 216 (307)
T ss_dssp EEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSC-------------EEEEEETT
T ss_pred EEEeCCCCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCC-------------EEEEEEcC
Confidence 333 3 347888888998887776532110 001111112222 234455555443333 57777778
Q ss_pred CcEEEEEe
Q 041325 442 CEIKIWQI 449 (450)
Q Consensus 442 g~i~iw~l 449 (450)
|.++-.++
T Consensus 217 G~~Kr~~~ 224 (307)
T 1zi0_A 217 GYGKRTAV 224 (307)
T ss_dssp SEEEEECG
T ss_pred CceEEEEH
Confidence 87776544
No 372
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=36.07 E-value=2e+02 Score=24.32 Aligned_cols=207 Identities=11% Similarity=0.073 Sum_probs=105.4
Q ss_pred cCCCEEEEEeCCCcEEEEecCCCeEE-------EEeecccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhh-cc
Q 041325 220 SDGSLLYSTSWDRTFKIWRTSDFRCL-------ESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQ-VN 291 (450)
Q Consensus 220 ~~~~~l~~~~~dg~i~iwd~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~ 291 (450)
++..++++.+.+|.|+--.+...+.. ..+.....+.+..+.... ....++..+..|.++-.....-... ..
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~-~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVN-THDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEEC-CCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 45667888899999988766543221 112212334455555544 3346777778888776654321000 00
Q ss_pred ccchh---hhhHhhcccceEEEEEcC---CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEE
Q 041325 292 KKHSL---VQTLEKHKSAVTALALST---DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCL 365 (450)
Q Consensus 292 ~~~~~---~~~~~~~~~~i~~l~~~~---~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 365 (450)
..... .-.+. ....|..+...+ +..+|+..+..|.++...+..-... ...-.....+.. ...+..+
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~------r~~G~~~i~L~~-~d~lv~~ 156 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAV------KSRGVIVIKLND-KDFVTSA 156 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----------CEECBCCCT-TCCEEEE
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhcc------CCCcEEEEecCC-CCEEEEE
Confidence 00011 11122 223455543332 4677888899999999887642111 001111123333 3444444
Q ss_pred EE-e-CCeEEEEeCCCeEEEeeCCCCcc-ccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCC
Q 041325 366 AV-V-SNLLFSGSSDNTIRIWRRSSSVT-DHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDC 442 (450)
Q Consensus 366 ~~-~-~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg 442 (450)
.. . .+.++..+.+|.+..++...-.. ...........+.. ...|.++....++. .+++.+..|
T Consensus 157 ~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~-~d~vv~~~~v~~~~-------------~l~~vt~~G 222 (312)
T 1suu_A 157 EIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKE-GDLFVKVLSVKENP-------------YLLIVSENG 222 (312)
T ss_dssp EEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCT-TCCEEEEEECTTCS-------------EEEEEETTS
T ss_pred EEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCC-CCEEEEEEEECCCC-------------eEEEEECCC
Confidence 44 3 34788899999998887764111 11111222223332 34455555444444 577777888
Q ss_pred cEEEEEe
Q 041325 443 EIKIWQI 449 (450)
Q Consensus 443 ~i~iw~l 449 (450)
..+..++
T Consensus 223 ~~kr~~~ 229 (312)
T 1suu_A 223 YGKRLNM 229 (312)
T ss_dssp EEEEEEG
T ss_pred ceEEEEH
Confidence 7776654
No 373
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=34.62 E-value=1.4e+02 Score=28.20 Aligned_cols=58 Identities=12% Similarity=0.047 Sum_probs=39.0
Q ss_pred eEEEEEccCCCEEEEEeCC------------CcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEE
Q 041325 213 VSALALSSDGSLLYSTSWD------------RTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVY 270 (450)
Q Consensus 213 v~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~ 270 (450)
.--|+|++.|++++.-..+ ..+.+.+..+++....+.......++.++|+|+...+++
T Consensus 478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfv 547 (592)
T 3zwu_A 478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFV 547 (592)
T ss_dssp EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEE
T ss_pred CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEE
Confidence 4568999999866654322 245666777777666666556678999999986553333
No 374
>2z5e_A Proteasome assembling chaperone 3; beta sandwich, homodimer; 2.00A {Homo sapiens}
Probab=29.96 E-value=47 Score=23.49 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=31.3
Q ss_pred CCccceeeeEEeecCCCcceEEEEEeCCEEEEeeCCCcEEEe
Q 041325 59 AASEHQCSATLKVKGNSSYIPSLAIAGKLLYGGSSNGEIRAW 100 (450)
Q Consensus 59 ~~~~~~~~~~l~~~~h~~~v~~~~~d~~~l~tgs~dg~v~vw 100 (450)
..++.+....+. |+...|.+..|+++.+++.+..|.+--|
T Consensus 6 pv~~kq~s~~I~--Gv~Tevv~~~FsD~ilV~VTQ~Gk~Gt~ 45 (122)
T 2z5e_A 6 LVISKQKTEVVC--GVPTQVVCTAFSSHILVVVTQFGKMGTL 45 (122)
T ss_dssp SSCEEEEEEEET--TEEEEEEEEECSSEEEEEEESTTCCCEE
T ss_pred CcceeEEEEEEC--CeeeEEEEEecCCEEEEEEEeCCeeeEE
Confidence 334455555555 9999999999999999999999986554
No 375
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=27.84 E-value=3e+02 Score=25.82 Aligned_cols=62 Identities=10% Similarity=0.021 Sum_probs=40.8
Q ss_pred CceEEEEEccCCCEEEEEeC------------CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEE
Q 041325 211 DTVSALALSSDGSLLYSTSW------------DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTG 272 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~~~~~------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 272 (450)
.....|.|.++|.+.+.... ...+..++..+++....+.......++.++|+|+...+++..
T Consensus 476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 35678999999987763321 125667777777765555423446789999999766454443
No 376
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=26.38 E-value=3.2e+02 Score=23.70 Aligned_cols=65 Identities=8% Similarity=0.022 Sum_probs=34.7
Q ss_pred CceEEEEEcc-CCCEEEEEeCCCcEEEEecCCCeEEEEeeccc------------ccceEEEEEeecCCcEEEEEcCCC
Q 041325 211 DTVSALALSS-DGSLLYSTSWDRTFKIWRTSDFRCLESVKNAH------------DDAINAIVVSKSNDGFVYTGSADT 276 (450)
Q Consensus 211 ~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~~l~~~~~dg 276 (450)
..+.+|.++| +...++.+..++.|...+- .++.-..+.... ...+.++.+.|.+.+.++++...+
T Consensus 177 ~~i~~i~~d~~~~~~l~vg~~~ggl~~s~D-gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g 254 (394)
T 3b7f_A 177 PKMHSILVDPRDPKHLYIGMSSGGVFESTD-AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG 254 (394)
T ss_dssp CEEEEEEECTTCTTCEEEEEETBEEEEESS-TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE
T ss_pred CceeEEEECCCCCCEEEEEECCCCEEEECC-CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe
Confidence 3578888987 3444555554444443322 222222221000 134888999876556777776655
No 377
>3of7_A Regulator of chromosome condensation; beta-propeller, guanine nucleotide exchange factor (GEF), GS histones, nucleus, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=25.72 E-value=3.7e+02 Score=24.22 Aligned_cols=170 Identities=14% Similarity=0.042 Sum_probs=84.8
Q ss_pred CceEEEEEccCCCEEEEEeCCCcEEEEecC---CCe------------EEEEeecccccceEEEEEeecCCcEEEEEcCC
Q 041325 211 DTVSALALSSDGSLLYSTSWDRTFKIWRTS---DFR------------CLESVKNAHDDAINAIVVSKSNDGFVYTGSAD 275 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~---~~~------------~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d 275 (450)
..|..++.. ....+.-..+|.|..|-.. .++ ....+.......|..|+.- ....++-..+
T Consensus 148 ~~i~~va~G--~~hs~alt~~G~vy~wG~n~~~~GqLG~~~~~~~~~~~P~~v~~l~~~~i~~va~G---~~hs~alt~~ 222 (473)
T 3of7_A 148 HKVVQLAAT--DNMSCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTPWKVPTFSKYNIVQLAPG---KDHILFLDEE 222 (473)
T ss_dssp CCEEEEEEC--SSEEEEEETTSCEEEEECEEETTEEEESBTTTBSCEEEEEECCCCCSSCEEEEEEC---SSEEEEEETT
T ss_pred CcEEEEEcc--CCEEEEEeCCCeEEEeeCCcCCCCccCCCCCCCccccCcEEccccCCCCEEEEEec---CCeEEEEeCC
Confidence 345555554 3344445667888888641 111 1111111112346666653 4466666789
Q ss_pred CcEEEEeCcchh-hhccccch-hhhhHh---hcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCC-C--C
Q 041325 276 TKIKVWKKLRAA-LQVNKKHS-LVQTLE---KHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDD-S--G 347 (450)
Q Consensus 276 g~i~vwd~~~~~-~~~~~~~~-~~~~~~---~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~-~--~ 347 (450)
|.|..|-..... +....... ....+. .....|..|+.. ....++-..+|.|+.|-....-.+-..... . .
T Consensus 223 G~v~~wG~n~~GqLG~~~~~~~~~~~~~p~~~~~~~v~~Ia~G--~~hs~alt~~G~v~~wG~n~~GqlG~~~~~~~~~~ 300 (473)
T 3of7_A 223 GMVFAWGNGQQNQLGRKVMERFRLKTLDPRPFGLRHVKYIASG--ENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGAL 300 (473)
T ss_dssp SCEEEEECCTTSTTSSCCCGGGTTTTCSCEECSCCSEEEEEEC--SSEEEEEETTSCEEEEEECTTSTTCCCSCCCTTCE
T ss_pred CeEEEEeCCCCCCCCCCccccccccccCceecCCcceEEEecC--CCeEEEEecCCCEEEeCCCCCCCcCCCCcccCCce
Confidence 999999654321 10000000 000000 011356666654 445566677999999976542211100000 0 0
Q ss_pred ceeeeccccCCccceEEEEEeCCeEEEEeCCCeEEEeeCC
Q 041325 348 HMVLKGALRGHTKAILCLAVVSNLLFSGSSDNTIRIWRRS 387 (450)
Q Consensus 348 ~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~ 387 (450)
...+..........|..++-...+.+.-..||.|+.|=..
T Consensus 301 ~~~P~~v~~~~~~~i~~ia~G~~hs~~lt~~G~v~~wG~n 340 (473)
T 3of7_A 301 VTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSCGRL 340 (473)
T ss_dssp EEEEEECCCCTTCCEEEEEECSSEEEEEETTSCEEEEEEC
T ss_pred eeccccccccCCccEEEEEeCCCeEEEEeCCCeEEEEECC
Confidence 0111111112235677887777777777889999999654
No 378
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=24.42 E-value=3.3e+02 Score=23.18 Aligned_cols=171 Identities=12% Similarity=0.106 Sum_probs=91.5
Q ss_pred CceEEEEEccCCCEEEEEeCCCcEEEE---ecCC------CeEEEEe-ecccccceEEEEEeec--CCcEEEEEcCCCcE
Q 041325 211 DTVSALALSSDGSLLYSTSWDRTFKIW---RTSD------FRCLESV-KNAHDDAINAIVVSKS--NDGFVYTGSADTKI 278 (450)
Q Consensus 211 ~~v~~~~~~~~~~~l~~~~~dg~i~iw---d~~~------~~~~~~~-~~~~~~~v~~~~~~~~--~~~~l~~~~~dg~i 278 (450)
+.+..+......+.++.-+..|.+.-. ++.. |..+..+ .......|..+...+. .+..++..+.+|.+
T Consensus 42 D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~i 121 (327)
T 3uc1_A 42 DIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLV 121 (327)
T ss_dssp GCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEE
T ss_pred CEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEE
Confidence 345555444555566666667776544 4432 2322221 1123456666655432 35589999999999
Q ss_pred EEEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcC--CCceeeeCCCCCCceeeecccc
Q 041325 279 KVWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERD--QGNYIVDGDDDSGHMVLKGALR 356 (450)
Q Consensus 279 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~--~~~~~~~~~~~~~~~~~~~~~~ 356 (450)
+-..+..-.... ........+.. ...+..+........|+..+..|.+..+... .-... .....+ .....+.
T Consensus 122 Kr~~l~~~~~~~-r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~--gr~a~G--v~~i~L~ 195 (327)
T 3uc1_A 122 KKSKLTDFDSNR-SGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPM--GRATSG--VQGMRFN 195 (327)
T ss_dssp EEEEGGGGCCCC-SSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCC--CTTSBC--EESSCCC
T ss_pred EEeEHHHhhccc-cCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcC--CcCCCC--eeeecCC
Confidence 988765432111 11111222332 3445555554556678888899999888876 32111 000011 1111222
Q ss_pred CCccceEEEEEe--CCeEEEEeCCCeEEEeeCCC
Q 041325 357 GHTKAILCLAVV--SNLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 357 ~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~ 388 (450)
. ...|.++... +.+++..+..|.++.-.+..
T Consensus 196 ~-~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e 228 (327)
T 3uc1_A 196 I-DDRLLSLNVVREGTYLLVATSGGYAKRTAIEE 228 (327)
T ss_dssp T-TCCEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred C-CCEEEEEEEECCCCEEEEEeCCCcEEEEEHHH
Confidence 2 3445555443 34889999999998877653
No 379
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=24.00 E-value=5e+02 Score=25.14 Aligned_cols=109 Identities=12% Similarity=0.143 Sum_probs=57.0
Q ss_pred ceEEEEEccC-CCEEEEEeCCCcEEEEecCCCeEEEEeecc------cccceEEEEEeecCCcEEEEEcCC-------Cc
Q 041325 212 TVSALALSSD-GSLLYSTSWDRTFKIWRTSDFRCLESVKNA------HDDAINAIVVSKSNDGFVYTGSAD-------TK 277 (450)
Q Consensus 212 ~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~~v~~~~~~~~~~~~l~~~~~d-------g~ 277 (450)
.|..|+++|. ...++++...+.|.-++-. ++.=..+... ....+.+|++.|.+.+.++++... +.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~-G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDPS-TETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEETT-TTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCCC-CCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 7999999995 4566667766666555432 3222222211 124689999998655555444321 12
Q ss_pred EEEEeCcchhhhccccchhhhh-Hh--h---cccceEEEEEcCC-CCEEEEeeCC
Q 041325 278 IKVWKKLRAALQVNKKHSLVQT-LE--K---HKSAVTALALSTD-GTVLYSGACD 325 (450)
Q Consensus 278 i~vwd~~~~~~~~~~~~~~~~~-~~--~---~~~~i~~l~~~~~-~~~l~~g~~d 325 (450)
..||....+. ..++.+.. +. . ....+..|+++|. .+.++++...
T Consensus 103 ~~l~~S~DgG----~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~ 153 (737)
T 2cn3_A 103 GAILRSTDRG----ETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRC 153 (737)
T ss_dssp CEEEEESSSS----SSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECST
T ss_pred ccEEEeCCCC----CCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeecc
Confidence 4555544332 22222211 00 0 0113467899884 4667666643
No 380
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=23.84 E-value=3.4e+02 Score=23.11 Aligned_cols=203 Identities=9% Similarity=0.015 Sum_probs=101.4
Q ss_pred CEEEEEeCCCcEEEEecCCC-------eEEEEeecccccceEEEEEeecCCcEEEEEcCCCcEEEE---eCcchhhhccc
Q 041325 223 SLLYSTSWDRTFKIWRTSDF-------RCLESVKNAHDDAINAIVVSKSNDGFVYTGSADTKIKVW---KKLRAALQVNK 292 (450)
Q Consensus 223 ~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vw---d~~~~~~~~~~ 292 (450)
..+++.+.+|.|+=-.+.+. +-+..+.....+.+..+......+ .++.-+..|.++-. ++..... ..
T Consensus 4 ~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d-~ll~fT~~Gr~y~~~~~~lp~~~r--~~ 80 (327)
T 3uc1_A 4 DVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHD-LILFFTTQGRVYRAKAYDLPEASR--TA 80 (327)
T ss_dssp EEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTS-EEEEEETTSEEEEEEGGGSCBCCS--SS
T ss_pred cEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCC-EEEEEeCCCeEEEEEHHHCcCCCc--cC
Confidence 45677788888886554321 112222222445555555554344 55555666766544 4433210 01
Q ss_pred cchhhhhHhh--cccceEEEEEcC---CCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEEEEE
Q 041325 293 KHSLVQTLEK--HKSAVTALALST---DGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILCLAV 367 (450)
Q Consensus 293 ~~~~~~~~~~--~~~~i~~l~~~~---~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 367 (450)
...++..+.. ....|..+..-+ +..+++..+.+|.++...+..-... ...-.....+.....-+.....
T Consensus 81 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~------~r~G~~~i~lke~D~lv~~~~~ 154 (327)
T 3uc1_A 81 RGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSN------RSGGIVAVNLRDNDELVGAVLC 154 (327)
T ss_dssp CCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCC------CSSCEESCBCCTTCCEEEEEEE
T ss_pred CCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhcc------ccCceEEEEECCCCEEEEEEEe
Confidence 1222222211 234555554333 5789999999999999887642211 0001111223333233333333
Q ss_pred e-CCeEEEEeCCCeEEEeeCC--CCcc-ccCCCceeEEEecCCCcceEEEEEEecCCCCCCCCCCCCceEEEEEcccCCc
Q 041325 368 V-SNLLFSGSSDNTIRIWRRS--SSVT-DHQKGYSCLAVLEGHRRPVKCLTAVVDSDYSNRNSDHSSTSFLVYSGSLDCE 443 (450)
Q Consensus 368 ~-~~~l~s~~~dg~v~iwd~~--~~~~-~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~~~~~~~~~~~~l~s~~~Dg~ 443 (450)
. .+.|+..+..|.+..+... .-.. ...........+. ....|.++...+++. .++..+..|.
T Consensus 155 ~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~-------------~ll~~T~~G~ 220 (327)
T 3uc1_A 155 SAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGT-------------YLLVATSGGY 220 (327)
T ss_dssp CTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTC-------------EEEEEETTSE
T ss_pred cCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCC-------------EEEEEeCCCc
Confidence 3 4478888899998888766 2110 0000111122232 234566666555555 6888888888
Q ss_pred EEEEE
Q 041325 444 IKIWQ 448 (450)
Q Consensus 444 i~iw~ 448 (450)
++.-.
T Consensus 221 ~Krt~ 225 (327)
T 3uc1_A 221 AKRTA 225 (327)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 77644
No 381
>2zux_A YESW protein; beta-propeller, lyase, rhamnose complex; HET: RAM; 1.32A {Bacillus subtilis} PDB: 2z8s_A* 2z8r_A*
Probab=23.50 E-value=4.6e+02 Score=24.53 Aligned_cols=222 Identities=13% Similarity=0.091 Sum_probs=0.0
Q ss_pred eCCEEEEeeCCCc---------------EEEecCCCCCceeeeecCCCCcceeEEec---CCCceEEEEEeCCe-EEEEe
Q 041325 84 AGKLLYGGSSNGE---------------IRAWNRDPNNYVNITSTDVGDHANVVATG---NGDAVKSLVVLGDK-LFSAH 144 (450)
Q Consensus 84 d~~~l~tgs~dg~---------------v~vw~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~v~~l~~~~~~-l~s~~ 144 (450)
|.-++..+-.||. |..||..++++.............-.+.+ |.-.|-.+.-.+.. |+.|+
T Consensus 266 drf~~~vayLDG~~Ps~v~~rGyYtr~~v~A~d~~~~~L~~~W~~d~~~~~~~~~~gqg~h~~~vaDVDgDG~dEIv~Gs 345 (591)
T 2zux_A 266 DRFLAGIAYLDGQRPSLIMTRGYYAKTMLVAYNFRDGKLSKLWTLDSSKSGNEAFAGQGNHNLSIADVDGDGKDEIIFGS 345 (591)
T ss_dssp GCEEEEEECTTSSSCEEEEEECCSSSCEEEEEEEETTEEEEEEEEETTSTTCGGGSSCCCSCCEEECCSSSSSCEEEETT
T ss_pred ccceeeEEECCCCCceEEEeccccceeEEEEEECCCCceEEEEEecCCCCCcccccccCCCCCeeEeCCCCCCceEEEee
Q ss_pred ----CCCeEEEEEcCCCceeEEeccCcccccceeeeeeccCCCcceeEeeecCceEEEeecceeeeecCCCceEEEEEcc
Q 041325 145 ----QDHKIRVWKIDNNTSAYYSTSGKLKNKYYERIATLPTLNDRFTKCFLANNYVQVRRHKKCTWVHHVDTVSALALSS 220 (450)
Q Consensus 145 ----~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 220 (450)
.||++ +|....+ |.+.+....|.|
T Consensus 346 ~~iD~dG~~-L~st~~g---------------------------------------------------HGDa~hv~dldP 373 (591)
T 2zux_A 346 MAVDHDGKG-MYSTGLG---------------------------------------------------HGDALHTGDLDP 373 (591)
T ss_dssp EEECTTSCE-EEECSCC---------------------------------------------------CCSCEEEECCCT
T ss_pred eEECCCCCE-eeeCCCC---------------------------------------------------CCCeeEEeecCC
Q ss_pred C--CCEEEEEeCC----CcEEEEecCCCeEEEEee-cccccceEEEEEeecCCcEEEEEcCCCcEEEEeCcchhhhcccc
Q 041325 221 D--GSLLYSTSWD----RTFKIWRTSDFRCLESVK-NAHDDAINAIVVSKSNDGFVYTGSADTKIKVWKKLRAALQVNKK 293 (450)
Q Consensus 221 ~--~~~l~~~~~d----g~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 293 (450)
+ |-.++.+..+ .-..+.|..+++.+.... ..+.+......+.|...+.-+-+ ++ .+|+.....
T Consensus 374 ~r~GlEv~~~~E~~~~~~G~~~~dA~tG~vlw~~~~~~d~Gr~~~~Didp~~pG~E~w~--~~--~l~~~~G~~------ 443 (591)
T 2zux_A 374 GRPGLEVFQVHEDKNAKYGLSFRDAATGKILWGVYAGKDVGRGMAADIDPRYPGQEVWA--NG--SLYSAKGVK------ 443 (591)
T ss_dssp TSSSCEEEEECCCTTSSCSEEEEETTTCCEEEEECCSSCCCCEEEECCCTTSSSCEEEE--TT--EEECTTSCB------
T ss_pred CCCCcEEEEEecCCCCCCccEEEECCCCcEEEEcCCCCCCCceeEEecCCCCCceEEEe--cC--ceECCCCCE------
Q ss_pred chhhhhHhhcccceEEEEEcCCCCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccC-------CccceEEEE
Q 041325 294 HSLVQTLEKHKSAVTALALSTDGTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRG-------HTKAILCLA 366 (450)
Q Consensus 294 ~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~ 366 (450)
+... .....-..+-|.-|...-+.-.. .|.-|+...++.. ....+.+ ...+..+..
T Consensus 444 --i~~~--~p~~~N~~i~WdGDl~relld~~--~i~k~~~~~~~~~-----------~l~~~~g~~snngtk~~P~l~aD 506 (591)
T 2zux_A 444 --IGSG--VPSSTNFGIWWDGDLLREQLDSN--RIDKWDYQNGVSK-----------NMLTASGAAANNGTKATPTLQAD 506 (591)
T ss_dssp --CSSC--CCSCCSEEECCSSSSSCEEEETT--EEEEEETTTTEEE-----------EEEECTTEECBSGGGCBCSEEEC
T ss_pred --ecCC--CCCCcceeEEECCCCcHhhhCCc--eEEecccCCCcee-----------EEEeecccccCCCCCCCEeeEEe
Q ss_pred EeCC----eEEEEeCCCeEEEe
Q 041325 367 VVSN----LLFSGSSDNTIRIW 384 (450)
Q Consensus 367 ~~~~----~l~s~~~dg~v~iw 384 (450)
+-|+ .|+-...+..++||
T Consensus 507 i~GDwREEvI~~t~D~~~LrIY 528 (591)
T 2zux_A 507 LLGDWREEVVWRTEDSSALRIY 528 (591)
T ss_dssp CSSSSSCEEEEEETTSSEEEEE
T ss_pred ccccCeeEEEEEeCCCCeEEEE
No 382
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=22.82 E-value=3.4e+02 Score=22.71 Aligned_cols=102 Identities=9% Similarity=0.115 Sum_probs=52.6
Q ss_pred EEccCCCEEEEEeC--------------CCcEEEEecCCCeEEEEeecccccceEEEEEeecCCcEEEEE---cCCCcEE
Q 041325 217 ALSSDGSLLYSTSW--------------DRTFKIWRTSDFRCLESVKNAHDDAINAIVVSKSNDGFVYTG---SADTKIK 279 (450)
Q Consensus 217 ~~~~~~~~l~~~~~--------------dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~---~~dg~i~ 279 (450)
-+++++++|+-+.. +..|+..++...+.. .+. ..... .+++.++.+..+- ..+..|.
T Consensus 59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~-~l~---~~~~~--~~s~~g~~Iy~~~~~~~~~~~Iy 132 (302)
T 3s25_A 59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST-VLD---PDPCI--YASLIGNYIYYLHYDTQTATSLY 132 (302)
T ss_dssp EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCE-EEE---CSCEE--EEEEETTEEEEEEESSSSCEEEE
T ss_pred eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcce-Eee---cCCcc--EEEEeCCEEEEEeecCCCCceEE
Confidence 34667777665543 246777777765432 232 11222 4555466444444 2334454
Q ss_pred EEeCcchhhhccccchhhhhHhhcccceEEEEEcCCCCEEEEeeC-CCcEEEEEcCCCc
Q 041325 280 VWKKLRAALQVNKKHSLVQTLEKHKSAVTALALSTDGTVLYSGAC-DRSILVWERDQGN 337 (450)
Q Consensus 280 vwd~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~g~~-dg~i~vwd~~~~~ 337 (450)
..++.... ...+..+. + .+++++++.|+-.+. ...|.+.++..+.
T Consensus 133 ~~~~dGs~---------~~~lt~~~--~--~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~ 178 (302)
T 3s25_A 133 RIRIDGEE---------KKKIKNHY--L--FTCNTSDRYFYYNNPKNGQLYRYDTASQS 178 (302)
T ss_dssp EEETTSCC---------CEEEESSC--C--CCSEEETTEEEEECTTTCCEEEEETTTTE
T ss_pred EEECCCCC---------eEEEeCCC--c--eEeeEECCEEEEEeCCCceEEEEECCCCC
Confidence 44543222 11111111 1 345678888876654 5678888877553
No 383
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=21.83 E-value=4.1e+02 Score=23.29 Aligned_cols=152 Identities=10% Similarity=0.108 Sum_probs=79.6
Q ss_pred cEEEEecCCC--eEEEEeecc-----cccceEEEEEeec------CCcE-EEEEcCCCcEEEEeCcchhhhccccchh--
Q 041325 233 TFKIWRTSDF--RCLESVKNA-----HDDAINAIVVSKS------NDGF-VYTGSADTKIKVWKKLRAALQVNKKHSL-- 296 (450)
Q Consensus 233 ~i~iwd~~~~--~~~~~~~~~-----~~~~v~~~~~~~~------~~~~-l~~~~~dg~i~vwd~~~~~~~~~~~~~~-- 296 (450)
.|.+||+.+. +.++.+... ....+..+++... .+.+ .++=...+.|.++|+.+++.-.......
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5888999998 888877632 2356788888721 1344 3444457789999998775211100000
Q ss_pred ----hhhHhhc----ccceEEEEEcCC----CCEEEEeeCCCcEEEEEcCCCceeeeCCCCCCceeeeccccCCccceEE
Q 041325 297 ----VQTLEKH----KSAVTALALSTD----GTVLYSGACDRSILVWERDQGNYIVDGDDDSGHMVLKGALRGHTKAILC 364 (450)
Q Consensus 297 ----~~~~~~~----~~~i~~l~~~~~----~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 364 (450)
.....+. ...+..|+++|+ ++.|.-....+. ++|.+.+.-.. . ............. +-...-..
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~-~ly~V~T~~L~-~-~~~~~~v~~~G~k-g~~s~~~~ 279 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI-KVYSVNTKELK-Q-KGGKLNPELLGNR-GKYNDAIA 279 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS-EEEEEEHHHHS-S-TTCCCCCEEEEEC-CTTCCEEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC-cEEEEEHHHhh-C-cchhhceEEeeec-CCCCCcce
Confidence 0000111 246888999987 666766655442 23333221000 0 0001111111111 11122334
Q ss_pred EEEe---CCeEEEEeCCCeEEEeeCCC
Q 041325 365 LAVV---SNLLFSGSSDNTIRIWRRSS 388 (450)
Q Consensus 365 ~~~~---~~~l~s~~~dg~v~iwd~~~ 388 (450)
++.+ |.++++--..+.|..|+...
T Consensus 280 ~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 280 LAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp EEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred EEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 5554 44667777788899999875
Done!