BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041329
(384 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2CKG|A Chain A, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKG|B Chain B, The Structure Of Senp1 Sumo-2 Co-Complex Suggests A
Structural Basis For Discrimination Between Sumo
Paralogues During Processing
pdb|2CKH|A Chain A, Senp1-sumo2 Complex
Length = 225
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 30/63 (47%)
Query: 321 ADPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRLEFNASHVEYFRKKIAVDIFND 380
+ W++ + KS Q+ DCG+F + + F H+ YFRK++ +I +
Sbjct: 163 TNGWQLFSKKSQIPQQMNGSDCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHR 222
Query: 381 DIV 383
++
Sbjct: 223 KLL 225
>pdb|2XRE|A Chain A, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
pdb|2XRE|B Chain B, Detection Of Cobalt In Previously Unassigned Human Senp1
Structure
Length = 230
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 321 ADPWKVIAVKSA--PQQEPGTGDCGVFVLMVTMYLMFGLRLEFNASHVEYFRKKIAVDIF 378
+ W++ + KS PQQ G+ DCG+F + + F H+ YFRK++ +I
Sbjct: 167 TNGWQLFSKKSQEIPQQMNGS-DCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEIL 225
Query: 379 NDDIV 383
+ ++
Sbjct: 226 HRKLL 230
>pdb|2IYC|A Chain A, Senp1 Native Structure
pdb|2IYC|B Chain B, Senp1 Native Structure
pdb|2IYD|A Chain A, Senp1 Covalent Complex With Sumo-2
Length = 226
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 321 ADPWKVIAVKSA--PQQEPGTGDCGVFVLMVTMYLMFGLRLEFNASHVEYFRKKIAVDIF 378
+ W++ + KS PQQ G+ DCG+F + + F H+ YFRK++ +I
Sbjct: 163 TNGWQLFSKKSQEIPQQMNGS-DCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEIL 221
Query: 379 NDDIV 383
+ ++
Sbjct: 222 HRKLL 226
>pdb|2XPH|A Chain A, Crystal Structure Of Human Senp1 With The Bound Cobalt
pdb|2XPH|B Chain B, Crystal Structure Of Human Senp1 With The Bound Cobalt
Length = 238
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 321 ADPWKVIAVKSA--PQQEPGTGDCGVFVLMVTMYLMFGLRLEFNASHVEYFRKKIAVDIF 378
+ W++ + KS PQQ G+ DCG+F + + F H+ YFRK++ +I
Sbjct: 175 TNGWQLFSKKSQEIPQQMNGS-DCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEIL 233
Query: 379 NDDIV 383
+ ++
Sbjct: 234 HRKLL 238
>pdb|3RFA|A Chain A, X-Ray Structure Of Rlmn From Escherichia Coli In Complex
With S- Adenosylmethionine
pdb|3RFA|B Chain B, X-Ray Structure Of Rlmn From Escherichia Coli In Complex
With S- Adenosylmethionine
Length = 404
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/103 (20%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Query: 58 HFLECQSFSFSRVILHNLLLRQVAHEEDSREDQLWFQIGEHLIRLSIVEWCLVTGLSFGV 117
+LE + + RV + ++L V ++ QL + + +++++ W G +G
Sbjct: 263 RYLEKSNANQGRVTIEYVMLDHV-NDGTEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR 321
Query: 118 DTKRKIDEMEERLRNTYFGGVHRKINVNEFDAVFKELKFEEMD 160
+ +ID + L + F + RK ++ DA +L + +D
Sbjct: 322 SSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAAXGQLAGDVID 364
>pdb|1EUV|A Chain A, X-Ray Structure Of The C-Terminal Ulp1 Protease Domain In
Complex With Smt3, The Yeast Ortholog Of Sumo
Length = 221
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 335 QEPGTGDCGVFVLMVTMYLMFGLRLEFNASHVEYFRKKIAVDIFND 380
Q+P DCG++V M T+Y L+F+ R+ IA I D
Sbjct: 173 QQPNGYDCGIYVCMNTLYGSADAPLDFDYKDAIRMRRFIAHLILTD 218
>pdb|3RF9|A Chain A, X-Ray Structure Of Rlmn From Escherichia Coli
pdb|3RF9|B Chain B, X-Ray Structure Of Rlmn From Escherichia Coli
Length = 404
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/103 (20%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Query: 58 HFLECQSFSFSRVILHNLLLRQVAHEEDSREDQLWFQIGEHLIRLSIVEWCLVTGLSFGV 117
+LE + + RV + ++L V ++ QL + + +++++ W G +G
Sbjct: 263 RYLEKSNANQGRVTIEYVMLDHV-NDGTEHAHQLAELLKDTPCKINLIPWNPFPGAPYGR 321
Query: 118 DTKRKIDEMEERLRNTYFGGVHRKINVNEFDAVFKELKFEEMD 160
+ +ID + L + F + RK ++ DA +L + +D
Sbjct: 322 SSNSRIDRFSKVLMSYGFTTIVRKTRGDDIDAACGQLAGDVID 364
>pdb|2IY0|A Chain A, Senp1 (Mutant) Sumo1 Rangap
pdb|2IY1|A Chain A, Senp1 (Mutant) Full Length Sumo1
pdb|2IY1|C Chain C, Senp1 (Mutant) Full Length Sumo1
Length = 226
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 321 ADPWKVIAVKSA--PQQEPGTGDCGVFVLMVTMYLMFGLRLEFNASHVEYFRKKIAVDIF 378
+ W++ + KS PQQ G+ D G+F + + F H+ YFRK++ +I
Sbjct: 163 TNGWQLFSKKSQEIPQQMNGS-DAGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEIL 221
Query: 379 NDDIV 383
+ ++
Sbjct: 222 HRKLL 226
>pdb|1MP1|A Chain A, Solution Structure Of The Pwi Motif From Srm160
Length = 111
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 228 FKRTRLKNPDHNIEKYNLYGFTSG--VQVFLNQLW 260
F + +KNPD + + NL GF +G + F+ +LW
Sbjct: 49 FNQLEVKNPDSKMMQINLTGFLNGKNAREFMGELW 83
>pdb|2G4D|A Chain A, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
pdb|2G4D|C Chain C, Crystal Structure Of Human Senp1 Mutant (C603s) In Complex
With Sumo-1
Length = 205
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)
Query: 321 ADPWKVIAVKSA--PQQEPGTGDCGVFVLMVTMYLMFGLRLEFNASHVEYFRKKIAVDIF 378
+ W++ + KS PQQ G+ D G+F + + F H+ YFRK++ +I
Sbjct: 142 TNGWQLFSKKSQEIPQQMNGS-DSGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEIL 200
Query: 379 NDDIV 383
+ ++
Sbjct: 201 HRKLL 205
>pdb|1TGZ|A Chain A, Structure Of Human Senp2 In Complex With Sumo-1
pdb|1TH0|A Chain A, Structure Of Human Senp2
pdb|1TH0|B Chain B, Structure Of Human Senp2
Length = 226
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 333 PQQEPGTGDCGVFVLMVTMYLMFGLRLEFNASHVEYFRKKIAVDIFNDDIV 383
PQQ G+ DCG+F Y+ + F + FRKK+ +I + ++
Sbjct: 177 PQQLNGS-DCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILHQQLL 226
>pdb|4H5B|A Chain A, Crystal Structure Of Dr_1245 From Deinococcus Radiodurans
pdb|4H5B|B Chain B, Crystal Structure Of Dr_1245 From Deinococcus Radiodurans
Length = 153
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 35/88 (39%), Gaps = 19/88 (21%)
Query: 250 SGVQVFLNQLW--NNGDCAVDSLVFDDRLNS----YLCGRQHTMSKSMTDVDMPL----- 298
+G Q F+ W GD AV V D N+ C Q T + +V M L
Sbjct: 27 NGGQRFIRMGWRFEMGDAAVLVSVNDGPNNTSRLEITCVTQKTYADRRAEVAMMLNDRNR 86
Query: 299 EVIFPR--------WLEYVGFYNIRPEL 318
E F R WLEYVGFY E+
Sbjct: 87 ERAFARSIDQEGNVWLEYVGFYPTLAEM 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.140 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,649,849
Number of Sequences: 62578
Number of extensions: 484543
Number of successful extensions: 1164
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1162
Number of HSP's gapped (non-prelim): 12
length of query: 384
length of database: 14,973,337
effective HSP length: 101
effective length of query: 283
effective length of database: 8,652,959
effective search space: 2448787397
effective search space used: 2448787397
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)