BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041329
(384 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94F30|ESD4_ARATH Ubiquitin-like-specific protease ESD4 OS=Arabidopsis thaliana
GN=ESD4 PE=1 SV=1
Length = 489
Score = 41.2 bits (95), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 321 ADPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRLEFNASHVEYFRKKIAVDIF 378
A+ W + V+ PQQ+ G DCG+F+L + GL L F+ H+ YFR + A +I
Sbjct: 428 ANSWDMEFVEDLPQQKNGY-DCGMFMLKYIDFFSRGLGLCFSQEHMPYFRLRTAKEIL 484
>sp|O65278|ULP1B_ARATH Putative ubiquitin-like-specific protease 1B OS=Arabidopsis
thaliana GN=ULP1B PE=5 SV=2
Length = 341
Score = 39.3 bits (90), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 324 WKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRLEFNASHVEYFRKKIAVDIF 378
W + V+ PQQ+ G DCG+F+L + GL L+F+ + YFR + A +I
Sbjct: 283 WGMEYVEERPQQQNGY-DCGMFMLKYIDFYSRGLSLQFSQKDMPYFRLRTAKEIL 336
>sp|Q6NXL6|SENP5_MOUSE Sentrin-specific protease 5 OS=Mus musculus GN=Senp5 PE=2 SV=1
Length = 749
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 315 RPELRSADPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRLEFNASHVEYFRKKI 373
RPE W+ K PQQ+ DCGVFVL L +F+ + RK+I
Sbjct: 683 RPEFLQG--WQTAVTKCIPQQK-NDSDCGVFVLQYCKCLALEQPFQFSQEDMPRVRKRI 738
>sp|Q96HI0|SENP5_HUMAN Sentrin-specific protease 5 OS=Homo sapiens GN=SENP5 PE=1 SV=3
Length = 755
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 315 RPELRSADPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRLEFNASHVEYFRKKI 373
RPE W+ K PQQ+ DCGVFVL L +F+ + RK+I
Sbjct: 689 RPEFLQG--WQTAVTKCIPQQK-NDSDCGVFVLQYCKCLALEQPFQFSQEDMPRVRKRI 744
>sp|Q8WP32|SENP5_MACFA Sentrin-specific protease 5 OS=Macaca fascicularis GN=SENP5 PE=2
SV=1
Length = 755
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 315 RPELRSADPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRLEFNASHVEYFRKKI 373
RPE W+ K PQQ+ DCGVFVL L +F+ + RK+I
Sbjct: 689 RPEFLQG--WQTAVTKCIPQQK-NDSDCGVFVLQYCKCLALEQPFQFSQEDMPRVRKRI 744
>sp|Q9P0U3|SENP1_HUMAN Sentrin-specific protease 1 OS=Homo sapiens GN=SENP1 PE=1 SV=2
Length = 644
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 324 WKVIAVKSA--PQQEPGTGDCGVFVLMVTMYLMFGLRLEFNASHVEYFRKKIAVDIFNDD 381
W++ + KS PQQ G+ DCG+F + + F H+ YFRK++ +I +
Sbjct: 584 WQLFSKKSQEIPQQMNGS-DCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHRK 642
Query: 382 IV 383
++
Sbjct: 643 LL 644
>sp|P59110|SENP1_MOUSE Sentrin-specific protease 1 OS=Mus musculus GN=Senp1 PE=2 SV=1
Length = 640
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 324 WKVIAVKSA--PQQEPGTGDCGVFVLMVTMYLMFGLRLEFNASHVEYFRKKIAVDIFNDD 381
W++ + KS PQQ G+ DCG+F + + F H+ YFRK++ +I +
Sbjct: 580 WQLFSKKSQEIPQQMNGS-DCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHRK 638
Query: 382 IV 383
++
Sbjct: 639 LL 640
>sp|P36976|SNP25_TORMA Synaptosomal-associated protein 25 OS=Torpedo marmorata GN=snap25
PE=2 SV=1
Length = 210
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 31/66 (46%)
Query: 129 RLRNTYFGGVHRKINVNEFDAVFKELKFEEMDDMDALKIALFYFADIVLNARNNHCQINF 188
+L+N GG ++K+ N D V MDD + + ++ Y I +AR N + N
Sbjct: 98 KLKNFEAGGAYKKVWGNNQDGVVASQPARVMDDREQMAMSGGYIRRITDDARENEMEENL 157
Query: 189 DWLDEV 194
D + +
Sbjct: 158 DQVGSI 163
>sp|Q5RBB1|SENP1_PONAB Sentrin-specific protease 1 OS=Pongo abelii GN=SENP1 PE=2 SV=1
Length = 645
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 324 WKVIAVKSA--PQQEPGTGDCGVFVLMVTMYLMFGLRLEFNASHVEYFRKKIAVDIFNDD 381
W++ + KS PQQ G+ DCG+F + + F H+ YFRK++ +I +
Sbjct: 585 WQLFSKKSQEIPQQMNGS-DCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHRK 643
Query: 382 IV 383
++
Sbjct: 644 LL 645
>sp|Q8GYL3|ULP1A_ARATH Ubiquitin-like-specific protease 1A OS=Arabidopsis thaliana
GN=ULP1A PE=2 SV=2
Length = 502
Score = 33.1 bits (74), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 324 WKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRLEFNASHVEYFRKKIAVDIF 378
W+ V+ P Q G DCG+F++ + GL L F + YFR + A +I
Sbjct: 444 WRQEFVQDLPMQRNGF-DCGMFMVKYIDFYSRGLDLCFTQEQMPYFRARTAKEIL 497
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.140 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 144,669,768
Number of Sequences: 539616
Number of extensions: 6033111
Number of successful extensions: 16194
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 16191
Number of HSP's gapped (non-prelim): 14
length of query: 384
length of database: 191,569,459
effective HSP length: 119
effective length of query: 265
effective length of database: 127,355,155
effective search space: 33749116075
effective search space used: 33749116075
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)