Query 041329
Match_columns 384
No_of_seqs 223 out of 413
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 09:51:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041329.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041329hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1th0_A SMT3-, sentrin-specific 99.9 3.6E-26 1.2E-30 214.0 8.3 135 232-383 90-226 (226)
2 2xph_A Sentrin-specific protea 99.9 7.3E-26 2.5E-30 213.6 7.5 135 232-383 102-238 (238)
3 1euv_A ULP1 protease; SUMO hyd 99.8 1.8E-21 6.2E-26 181.6 9.2 130 231-382 85-220 (221)
4 2bkr_A Sentrin-specific protea 99.6 2.1E-17 7.3E-22 152.8 1.9 84 287-379 117-208 (212)
5 3eay_A Sentrin-specific protea 99.6 2.7E-16 9.4E-21 154.2 7.5 90 286-378 209-311 (323)
6 2oix_A Xanthomonas outer prote 99.4 7.2E-14 2.5E-18 127.1 6.3 107 249-381 66-182 (186)
7 2p06_A Hypothetical protein AF 20.1 25 0.00084 27.6 0.3 57 116-209 47-103 (114)
8 2zxj_A Transcriptional regulat 15.3 1.7E+02 0.0058 23.6 4.4 60 93-154 28-87 (120)
9 2xf7_A GP23.1; viral protein; 14.7 50 0.0017 22.8 0.8 12 196-207 37-48 (51)
10 4b8b_A General negative regula 13.4 1.8E+02 0.0063 30.4 4.9 31 122-155 446-476 (603)
No 1
>1th0_A SMT3-, sentrin-specific protease 2; SUMO, AXAM, SENP, ULP, cell cycle, hydrolase; 2.20A {Homo sapiens} SCOP: d.3.1.7 PDB: 1tgz_A 2io0_A 2io1_A 2io2_A 2io3_A
Probab=99.92 E-value=3.6e-26 Score=213.95 Aligned_cols=135 Identities=19% Similarity=0.288 Sum_probs=108.6
Q ss_pred cccCCCCCccceecccchhhhhhhhhccccCCCCCCCcccccccceeeeeccceeeccCCCCCCchHHHHHHHHHHHhcc
Q 041329 232 RLKNPDHNIEKYNLYGFTSGVQVFLNQLWNNGDCAVDSLVFDDRLNSYLCGRQHTMSKSMTDVDMPLEVIFPRWLEYVGF 311 (384)
Q Consensus 232 kl~~~~~~~~~y~l~GF~~~Lql~a~e~~p~~~~~v~n~~f~er~I~y~~~~i~~~~DS~g~~~~~~~~~l~~yL~~E~~ 311 (384)
++++|++..+.+...-...|++. ..||. .+|.+ +.++.|.|| ||||+.+..+.+.|++||..|+
T Consensus 90 ~v~~w~~~~~l~~~~~i~iPin~--~~HW~---l~vi~--~~~~~i~~~--------DSl~~~~~~~~~~l~~~l~~e~- 153 (226)
T 1th0_A 90 AVKRWTKGVNLFEQEIILVPIHR--KVHWS---LVVID--LRKKCLKYL--------DSMGQKGHRICEILLQYLQDES- 153 (226)
T ss_dssp GTGGGGTTCCGGGSSEEEEEEEE--TTEEE---EEEEE--TTTTEEEEE--------CTTCCCCHHHHHHHHHHHHHHH-
T ss_pred HHHHHhhcCCcccCCEEEEeEEe--CcEEE---EEEEE--cCCCceEEE--------cCCCCCchHHHHHHHHHHHHHH-
Confidence 34555555554444444444443 34666 33322 345555555 9999999999999999999998
Q ss_pred cccCCCCCCCCCccccc--ccCCCCCCCCCCCchhHHHHHHHHHhcCCCcccCccchHHHHHHHHHHHHcCccc
Q 041329 312 YNIRPELRSADPWKVIA--VKSAPQQEPGTGDCGVFVLMVTMYLMFGLRLEFNASHVEYFRKKIAVDIFNDDIV 383 (384)
Q Consensus 312 ~~k~~~~~~~~~W~~~~--~~~~P~Q~N~g~DCGVF~c~~a~~ls~~~~~~Fsq~dmp~~R~~m~~Ei~~~~l~ 383 (384)
.+|++.+++.++|++.. ..++|||.| |+|||||+|+||+++++|.|++|+|+|||++|++|++||++|+|+
T Consensus 154 ~~k~~~~~~~~~w~~~~~~~~~~PqQ~N-g~DCGvfvl~~~~~~~~~~~~~f~q~dm~~~R~~~~~ei~~~~l~ 226 (226)
T 1th0_A 154 KTKRNSDLNLLEWTHHSMKPHEIPQQLN-GSDCGMFTCKYADYISRDKPITFTQHQMPLFRKKMVWEILHQQLL 226 (226)
T ss_dssp HHHTSCCCCGGGCEEEECCTTTSCCCCS-SSCHHHHHHHHHHHHTTTCCCCCCGGGHHHHHHHHHHHHHHTCCC
T ss_pred HHhcCCCCCcccceeccccCCCCCCCCC-CCCHHHHHHHHHHHHhCCCCCccChhhHHHHHHHHHHHHHhCCcC
Confidence 99999999999999853 468999999 999999999999999999999999999999999999999999985
No 2
>2xph_A Sentrin-specific protease 1; hydrolase, cysteine protease, thiol protease; 2.40A {Homo sapiens} PDB: 2xre_A 2iyc_A 2iyd_A 2iy1_A 2iy0_A 2ckg_A 2ckh_A 2g4d_A
Probab=99.92 E-value=7.3e-26 Score=213.58 Aligned_cols=135 Identities=19% Similarity=0.382 Sum_probs=111.2
Q ss_pred cccCCCCCccceecccchhhhhhhhhccccCCCCCCCcccccccceeeeeccceeeccCCCCCCchHHHHHHHHHHHhcc
Q 041329 232 RLKNPDHNIEKYNLYGFTSGVQVFLNQLWNNGDCAVDSLVFDDRLNSYLCGRQHTMSKSMTDVDMPLEVIFPRWLEYVGF 311 (384)
Q Consensus 232 kl~~~~~~~~~y~l~GF~~~Lql~a~e~~p~~~~~v~n~~f~er~I~y~~~~i~~~~DS~g~~~~~~~~~l~~yL~~E~~ 311 (384)
.+++|+++.+.+..+-...|++. ..||. .++.+ +.++.|.|| ||||+.+..+.+.|++||+.|+
T Consensus 102 ~v~~w~~~~~l~~~~~i~iPin~--~~HW~---L~vi~--~~~~~i~~~--------DSl~~~~~~~~~~l~~~L~~e~- 165 (238)
T 2xph_A 102 AVKRWTKKVDVFSVDILLVPIHL--GVHWC---LAVVD--FRKKNITYY--------DSMGGINNEACRILLQYLKQES- 165 (238)
T ss_dssp HHTTTTTTCCGGGSSEEEEEEEE--TTEEE---EEEEE--TTTTEEEEE--------CTTCCCCHHHHHHHHHHHHHHH-
T ss_pred HHHHHhccCCcccCCEEEEcccC--CCceE---EEEEE--cccceEEEe--------ecccCCCHHHHHHHHHHHHHHH-
Confidence 45566666666555555556554 25666 33332 345556565 9999999999999999999998
Q ss_pred cccCCCCCCCCCccccc--ccCCCCCCCCCCCchhHHHHHHHHHhcCCCcccCccchHHHHHHHHHHHHcCccc
Q 041329 312 YNIRPELRSADPWKVIA--VKSAPQQEPGTGDCGVFVLMVTMYLMFGLRLEFNASHVEYFRKKIAVDIFNDDIV 383 (384)
Q Consensus 312 ~~k~~~~~~~~~W~~~~--~~~~P~Q~N~g~DCGVF~c~~a~~ls~~~~~~Fsq~dmp~~R~~m~~Ei~~~~l~ 383 (384)
.+|+|.+++.++|++.. ..++|||.| |+|||||+|+||+|++++.|++|+|+|||++|++|++||++|+|+
T Consensus 166 ~~k~~~~~~~~~w~~~~~~~~~~PqQ~N-g~DCGvfvl~~~e~~~~~~~~~f~q~dm~~~R~~m~~eil~~~ll 238 (238)
T 2xph_A 166 IDKKRKEFDTNGWQLFSKKSQEIPQQMN-GSDCGMFACKYADCITKDRPINFTQQHMPYFRKRMVWEILHRKLL 238 (238)
T ss_dssp HHHHCSCCCCTTCEEEECCSSSSCCCSB-GGGHHHHHHHHHHHHHTTCCCCCCGGGHHHHHHHHHHHHHHTCCC
T ss_pred HHhcCCCcCcccceecccCCCCCCCCCC-CCCHHHHHHHHHHHHhcCCCCCcChhhHHHHHHHHHHHHHhCCCC
Confidence 88889899999999753 568999999 999999999999999999999999999999999999999999985
No 3
>1euv_A ULP1 protease; SUMO hydrolase, ubiquitin-like protease 1, SMT3 hydrolase desumoylating enzyme, cysteine protease; 1.60A {Saccharomyces cerevisiae} SCOP: d.3.1.7 PDB: 2hkp_A 2hl8_A 2hl9_A
Probab=99.84 E-value=1.8e-21 Score=181.56 Aligned_cols=130 Identities=18% Similarity=0.271 Sum_probs=96.3
Q ss_pred ccccCCCC--CccceecccchhhhhhhhhccccCCCCCCCcccccccceeeeeccceeeccCCCCC-Cc---hHHHHHHH
Q 041329 231 TRLKNPDH--NIEKYNLYGFTSGVQVFLNQLWNNGDCAVDSLVFDDRLNSYLCGRQHTMSKSMTDV-DM---PLEVIFPR 304 (384)
Q Consensus 231 ~kl~~~~~--~~~~y~l~GF~~~Lql~a~e~~p~~~~~v~n~~f~er~I~y~~~~i~~~~DS~g~~-~~---~~~~~l~~ 304 (384)
..+++|++ +.+.+..+-...|++.- ..||. .++.+ +.++.|.|| ||||+. +. .+++.|++
T Consensus 85 ~~v~rw~~~~~~~~~~~~~i~iPin~~-~~HW~---l~vi~--~~~~~i~~~--------DSl~~~~~~~~~~i~~~l~~ 150 (221)
T 1euv_A 85 QGVRRWMKRKKTQIDKLDKIFTPINLN-QSHWA---LGIID--LKKKTIGYV--------DSLSNGPNAMSFAILTDLQK 150 (221)
T ss_dssp GGTTTTTGGGTSCGGGCSEEEEEEEET-TTEEE---EEEEE--TTTTEEEEE--------CSSCCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcccCCEEEEEEEcC-CCeEE---EEEEE--cCCCEEEEE--------ecCCCCCcchHHHHHHHHHH
Confidence 34556665 33444444444454431 24666 33322 345556666 999965 33 47889999
Q ss_pred HHHHhcccccCCCCCCCCCcccccccCCCCCCCCCCCchhHHHHHHHHHhcCCCcccCccchHHHHHHHHHHHHcCcc
Q 041329 305 WLEYVGFYNIRPELRSADPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRLEFNASHVEYFRKKIAVDIFNDDI 382 (384)
Q Consensus 305 yL~~E~~~~k~~~~~~~~~W~~~~~~~~P~Q~N~g~DCGVF~c~~a~~ls~~~~~~Fsq~dmp~~R~~m~~Ei~~~~l 382 (384)
||.+|+ .++.+. +|.+. ..++|||.| |+|||||+|+||+|+++|.|++|+|+||+.+|++|+.+|+++.|
T Consensus 151 ~l~~e~-~~~~~~-----~~~~~-~~~~PqQ~N-~~DCGvfv~~~~~~~~~~~~l~f~~~d~~~~R~~i~~~Il~~~l 220 (221)
T 1euv_A 151 YVMEES-KHTIGE-----DFDLI-HLDCPQQPN-GYDCGIYVCMNTLYGSADAPLDFDYKDAIRMRRFIAHLILTDAL 220 (221)
T ss_dssp HHHHHT-TSSSCT-----TCEEE-EECCCCCSS-SSTHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHH-HHhcCC-----CceEe-ecCCCCCCC-CcCHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHHhccC
Confidence 999998 777654 45544 458999999 99999999999999999999999999999999999999999876
No 4
>2bkr_A Sentrin-specific protease 8; protein-binding-hydrolase complex, ubiquitin, hydrolase, Pro thiol protease, UBL conjugation pathway, ubiquitin/hydrolas complex; 1.90A {Homo sapiens} SCOP: d.3.1.7 PDB: 2bkq_A 1xt9_A
Probab=99.65 E-value=2.1e-17 Score=152.77 Aligned_cols=84 Identities=17% Similarity=0.077 Sum_probs=66.5
Q ss_pred eccCCCCCCchHHHHHHHHHHHhcccccCCCCCCCCCcccccccCCCCCCCCCCCchhHHHHHHHHHhcCC--------C
Q 041329 287 MSKSMTDVDMPLEVIFPRWLEYVGFYNIRPELRSADPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGL--------R 358 (384)
Q Consensus 287 ~~DS~g~~~~~~~~~l~~yL~~E~~~~k~~~~~~~~~W~~~~~~~~P~Q~N~g~DCGVF~c~~a~~ls~~~--------~ 358 (384)
+|||||+.+....+.+.++|.... ..+.. .|.+. ..++|||.| |+|||||+|+||++++++. +
T Consensus 117 ~~DSl~~~n~~~~~~l~~~l~~~l-~~~~~------~~~~~-~~~~PqQ~N-~~DCGvfvl~~~~~l~~~~~~~~~~~~~ 187 (212)
T 2bkr_A 117 HYDSHSRSNSVHAKQVAEKLEAFL-GRKGD------KLAFV-EEKAPAQQN-SYDCGMYVICNTEALCQNFFRQQTESLL 187 (212)
T ss_dssp EECSSTTTTHHHHHHHHHHHHHHH-SCTTC------CCCEE-ECCCCCCSS-SSTHHHHHHHHHHHHHHHHHSCCCCCHH
T ss_pred EEeCCCCCCHHHHHHHHHHHHHHh-CCccc------cceEe-ECCCCCCCC-CCcHHHHHHHHHHHHHHHhhhcCccccc
Confidence 449999999988766666666654 22211 34443 468999999 9999999999999999985 2
Q ss_pred cccCccchHHHHHHHHHHHHc
Q 041329 359 LEFNASHVEYFRKKIAVDIFN 379 (384)
Q Consensus 359 ~~Fsq~dmp~~R~~m~~Ei~~ 379 (384)
..|++++|+.+|++|..+|.+
T Consensus 188 ~~~~~~~i~~~R~~i~~lI~~ 208 (212)
T 2bkr_A 188 QLLTPAYITKKRGEWKDLIAT 208 (212)
T ss_dssp HHCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHH
Confidence 459999999999999998864
No 5
>3eay_A Sentrin-specific protease 7; ULP, SENP, SUMO, ubiquitin, crystal, alternative splicing, hydrolase, phosphoprotein, polymorphism, thiol protease; 2.40A {Homo sapiens}
Probab=99.63 E-value=2.7e-16 Score=154.22 Aligned_cols=90 Identities=17% Similarity=0.153 Sum_probs=74.5
Q ss_pred eeccCCCCC-CchHHHHHHHHHHHhcccccCC--CCCCCCCcccccccCCCCCCCCCCCchhHHHHHHHHHhcCCCcccC
Q 041329 286 TMSKSMTDV-DMPLEVIFPRWLEYVGFYNIRP--ELRSADPWKVIAVKSAPQQEPGTGDCGVFVLMVTMYLMFGLRLEFN 362 (384)
Q Consensus 286 ~~~DS~g~~-~~~~~~~l~~yL~~E~~~~k~~--~~~~~~~W~~~~~~~~P~Q~N~g~DCGVF~c~~a~~ls~~~~~~Fs 362 (384)
.+|||||+. +..+++.|++||++|+ ++|++ .+++.+.|.... .++|||.| |+|||||+|+||++++++.+++|+
T Consensus 209 l~lDSL~~~~~~~~~~~Lr~YL~~E~-~~k~~~~~~f~~~~~~~~~-~~~P~Q~N-~~DCGvfvl~~~e~~~~~~~~~f~ 285 (323)
T 3eay_A 209 LILDSLKAASVQNTVQNLREYLEVEW-EVKLKTHRQFSKTNMVDLC-PKVPKQDN-SSDCGVYLLQYVESFFKDPIVNFE 285 (323)
T ss_dssp EEECSSCCSSHHHHHHHHHHHHHHHH-HHHHSSCCCCCTTTSCEEC-CBCCCCCS-TTCHHHHHHHHHHHHHHSCCCCCC
T ss_pred EEEECCCCCCcchHHHHHHHHHHHHH-HhhcCCCcCCCHhHceecc-CCCCCcCC-CCcHHHHHHHHHHHHHhCCccccc
Confidence 577999996 5889999999999999 88865 456666787654 46999999 999999999999999999987765
Q ss_pred c----------cchHHHHHHHHHHHH
Q 041329 363 A----------SHVEYFRKKIAVDIF 378 (384)
Q Consensus 363 q----------~dmp~~R~~m~~Ei~ 378 (384)
| ++|...|..|..-|.
T Consensus 286 ~~~~~~~wf~~~~i~~kR~ei~~LI~ 311 (323)
T 3eay_A 286 LPIHLEKWFPRHVIKTKREDIRELIL 311 (323)
T ss_dssp SSCBCTTSSCHHHHHTHHHHHHHHHH
T ss_pred cccccccCCCHHHHHHHHHHHHHHHH
Confidence 4 578888888766554
No 6
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=99.44 E-value=7.2e-14 Score=127.07 Aligned_cols=107 Identities=14% Similarity=0.009 Sum_probs=68.8
Q ss_pred hhhhhhhhhccccCCCCCCCcccccccce---eeeeccceeeccCCCCCCchHHHHHHHHHHHhcccccCCCCCCCCCcc
Q 041329 249 TSGVQVFLNQLWNNGDCAVDSLVFDDRLN---SYLCGRQHTMSKSMTDVDMPLEVIFPRWLEYVGFYNIRPELRSADPWK 325 (384)
Q Consensus 249 ~~~Lql~a~e~~p~~~~~v~n~~f~er~I---~y~~~~i~~~~DS~g~~~~~~~~~l~~yL~~E~~~~k~~~~~~~~~W~ 325 (384)
..|++. ...||. .+|.+ ..++.+ .|| ||||+.+.. .+.+.+.|...- +. + ..+
T Consensus 66 ~iPin~-~~~HWs---Llvi~--~~~~~~~~~~~~--------DSl~~~~~~-~~~l~~~l~~~l--~~---~----~~~ 121 (186)
T 2oix_A 66 FLPINQ-PNAHWS---LLVVD--RRNKDAVAAYHY--------DSMAQKDPQ-QRYLADMAAYHL--GL---D----YQQ 121 (186)
T ss_dssp EEEEEE-TTTEEE---EEEEE--CSSTTSCEEEEE--------CCCSSCCHH-HHHHHHHHHHHT--TC---C----GGG
T ss_pred EEEEeC-CCCccE---EEEEE--CCCCeeeeeEEE--------cCCCCCCHH-HHHHHHHHHHHh--CC---C----ccc
Confidence 345554 234777 44332 344555 555 999997664 344444444332 11 1 111
Q ss_pred cccccCCCCCCCCCCCchhHHHHHHHHHhcC-------CCcccCccchHHHHHHHHHHHHcCc
Q 041329 326 VIAVKSAPQQEPGTGDCGVFVLMVTMYLMFG-------LRLEFNASHVEYFRKKIAVDIFNDD 381 (384)
Q Consensus 326 ~~~~~~~P~Q~N~g~DCGVF~c~~a~~ls~~-------~~~~Fsq~dmp~~R~~m~~Ei~~~~ 381 (384)
+ ...++|||.| |+|||||+|+||+++++. .+-.|+++++...|+.|...|.+.+
T Consensus 122 ~-~~~~~PqQ~N-g~DCGvfv~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~R~~i~~lI~~~~ 182 (186)
T 2oix_A 122 T-HEMPIAIQSD-GYSAGDHVLTGIEVLAHRVLDGTFDYAGGRDLTDIEPDRGLIRDRLAQAE 182 (186)
T ss_dssp C-EEECBCCCC---CCHHHHHHHHHHHHHHHHHHTCTTSTTTTCBTTCCCCHHHHHHHHHCC-
T ss_pred c-ccCCCCCCCC-CCCHHHHHHHHHHHHHHHHhhcCccCCCcCCHHHHHHHHHHHHHHHHhcc
Confidence 2 2458999999 999999999999999864 2334899999999999999988753
No 7
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=20.07 E-value=25 Score=27.58 Aligned_cols=57 Identities=33% Similarity=0.515 Sum_probs=34.7
Q ss_pred CCCCccchhhhHHHhhhhhcCCcccccchHHHHHHHHhhhccccCchhhhHHHHHhhhhheeecCCCCCCCChhhhhhhh
Q 041329 116 GVDTKRKIDEMEERLRNTYFGGVHRKINVNEFDAVFKELKFEEMDDMDALKIALFYFADIVLNARNNHCQINFDWLDEVD 195 (384)
Q Consensus 116 ~~~p~~~~~~~~~~~~~~lFg~~~~~~tv~~v~~~L~~~~~~~~~~~~rlrla~L~~v~gvll~~~~~~~i~~~~~~~v~ 195 (384)
|..|..-.+...+++++++|.. .+++.+.. +.++++-+| ....
T Consensus 47 gntprpwfdfseerllsrlfee------mdelreav------ekedwenlr-------------------------dell 89 (114)
T 2p06_A 47 GNTPRPWFDFSEERLLSRLFEE------MDELREAV------EKEDWENLR-------------------------DELL 89 (114)
T ss_dssp TCCSCHHHHSCHHHHHHHHHHH------HHHHHHHH------HTTCHHHHH-------------------------HHHH
T ss_pred CCCCCCcccccHHHHHHHHHHH------HHHHHHHH------HHHHHHHHH-------------------------HHHH
Confidence 3344444555566777777662 23333333 346666664 3456
Q ss_pred chhhhhcCCchhHH
Q 041329 196 DIEYFRKCPWGLLS 209 (384)
Q Consensus 196 Dle~f~~yPWGr~a 209 (384)
|+..|+-|-||..+
T Consensus 90 dvanfcmylwgkls 103 (114)
T 2p06_A 90 DVANFCMYLWGKLS 103 (114)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhh
Confidence 78899999999885
No 8
>2zxj_A Transcriptional regulatory protein WALR; two-component system, YYCG, response regulator, helix-turn-H motif, DNA-binding domain; 1.87A {Staphylococcus aureus} PDB: 2d1v_A
Probab=15.35 E-value=1.7e+02 Score=23.60 Aligned_cols=60 Identities=15% Similarity=0.039 Sum_probs=34.9
Q ss_pred EEEcceeeeeehhhhhhhhccccCCCCccchhhhHHHhhhhhcCCcccccchHHHHHHHHhh
Q 041329 93 FQIGEHLIRLSIVEWCLVTGLSFGVDTKRKIDEMEERLRNTYFGGVHRKINVNEFDAVFKEL 154 (384)
Q Consensus 93 ~v~~G~PIRfsl~Ef~lvTGL~C~~~p~~~~~~~~~~~~~~lFg~~~~~~tv~~v~~~L~~~ 154 (384)
+.++|++|.++-+||.++.=|--.+---..++.=.+.+|..-... ..-+++-.+..|+++
T Consensus 28 v~~~g~~i~Lt~~E~~lL~~L~~~~g~vvsre~L~~~vWg~~~~~--~~~~l~v~I~rLRkK 87 (120)
T 2zxj_A 28 IKKRGEDIELTHREFELFHYLSKHMGQVMTREHLLQTVWGYDYFG--DVRTVDVTIRRLREK 87 (120)
T ss_dssp EEETTEEECCCHHHHHHHHHHHTTTTCCBCHHHHHHHHHCTTCCS--CTHHHHHHHHHHHHH
T ss_pred EEECCEEEEcCHHHHHHHHHHHhCCCceEcHHHHHHHhcCCCCCC--CCcChHHHHHHHHHH
Confidence 457999999999999999877543332233444445667532111 112344445555543
No 9
>2xf7_A GP23.1; viral protein; 1.61A {Bacillus phage SPP1} PDB: 2xf5_A 2xf6_A
Probab=14.68 E-value=50 Score=22.80 Aligned_cols=12 Identities=25% Similarity=0.794 Sum_probs=9.2
Q ss_pred chhhhhcCCchh
Q 041329 196 DIEYFRKCPWGL 207 (384)
Q Consensus 196 Dle~f~~yPWGr 207 (384)
.-+....||||.
T Consensus 37 E~D~I~~ypwga 48 (51)
T 2xf7_A 37 EADKIMSYPWGA 48 (51)
T ss_dssp HHHHHHTSCTTC
T ss_pred HHHHHHhCcccc
Confidence 346788999994
No 10
>4b8b_A General negative regulator of transcription subun; 2.80A {Saccharomyces cerevisiae S288C}
Probab=13.36 E-value=1.8e+02 Score=30.37 Aligned_cols=31 Identities=6% Similarity=0.319 Sum_probs=23.8
Q ss_pred chhhhHHHhhhhhcCCcccccchHHHHHHHHhhh
Q 041329 122 KIDEMEERLRNTYFGGVHRKINVNEFDAVFKELK 155 (384)
Q Consensus 122 ~~~~~~~~~~~~lFg~~~~~~tv~~v~~~L~~~~ 155 (384)
+.+.....++++++. ..+|+++++++|++.+
T Consensus 446 dIE~ean~yfqkmY~---~eisI~~iV~~L~~~K 476 (603)
T 4b8b_A 446 DIEKEMQNYLQKMYS---GELAIKDVIELLRRLR 476 (603)
T ss_dssp HHHHHHHHHHHHHHT---TSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc---CCCCHHHHHHHHHHhh
Confidence 345555567777777 3589999999999987
Done!