Query 041332
Match_columns 753
No_of_seqs 198 out of 768
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 09:55:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041332.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041332hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4djk_A Probable glutamate/gamm 96.5 0.028 9.6E-07 61.8 14.9 103 198-305 130-240 (511)
2 3gia_A Uncharacterized protein 96.1 0.023 7.9E-07 61.3 11.2 107 171-288 97-208 (444)
3 3l1l_A Arginine/agmatine antip 95.3 0.066 2.3E-06 57.6 10.5 79 200-287 127-210 (445)
4 3bkd_A Transmembrane domain of 21.4 44 0.0015 22.8 1.7 15 62-76 8-22 (26)
5 3lbw_A M2 protein; proton chan 21.1 46 0.0016 22.2 1.7 15 62-76 5-19 (23)
6 3kcp_B Cellulosome anchoring p 21.1 26 0.00088 34.5 0.7 13 245-257 56-68 (187)
7 2bm3_A Type 2 cohesin, scaffol 20.4 27 0.00093 33.9 0.7 12 245-256 44-55 (166)
8 1nrp_R Receptor based peptide 16.5 46 0.0016 22.4 0.9 17 319-335 4-20 (26)
9 2jln_A MHP1; hydantoin, transp 15.1 5.9E+02 0.02 28.1 10.1 33 286-318 225-272 (501)
10 3ghp_A Cellulosomal scaffoldin 13.3 52 0.0018 33.3 0.7 13 244-256 46-58 (227)
No 1
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=96.54 E-value=0.028 Score=61.76 Aligned_cols=103 Identities=17% Similarity=0.168 Sum_probs=55.0
Q ss_pred EeehhHHHHHHHHhhhhccccchhhhhhhH----HHHHHHHHHHHHHHhhcccCcceeeecCHHHHHHHHHhc--Cccee
Q 041332 198 VVLISCVILVGLFSLQHHGTHRVAFIFAPI----VTTWLLCISSIGIYNIFQWNPHIFNALSPVYMLKFFRST--GIDGW 271 (753)
Q Consensus 198 vv~is~~ILv~LF~iQ~~GT~kvg~~FgPI----ml~WF~~l~~~Gi~~I~~~~P~Vl~AlnP~yai~f~~~~--~~~g~ 271 (753)
...+++++++++..+.-+|....+++..-. +++-++.+.++|+..+...+|.-++ .| .+.+..+ +..+|
T Consensus 130 ~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~ 204 (511)
T 4djk_A 130 KTIAALIILWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIE-MD----SKTFFPDFSKVGTL 204 (511)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC-----------------CCCCCTTSTTTT
T ss_pred HHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc-Cc----ccccCCCcccchHH
Confidence 456788888888999999998877754332 2223445556677665542332111 01 1111111 12345
Q ss_pred eeecceeeeecchhhhhccCCCCC--ccchhhhhhH
Q 041332 272 ISLGGVVLSITGVETMFADLGHFS--SLSIKVAFTF 305 (753)
Q Consensus 272 ~~LG~V~L~iTGaEALyADmGHFg--~~~Ir~aw~~ 305 (753)
..+..++.+.+|-|+.-.=-+-.- +|.|..|-..
T Consensus 205 ~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~~ 240 (511)
T 4djk_A 205 VVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLL 240 (511)
T ss_dssp TTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHhccCcccchhHHHHH
Confidence 567778899999998644333332 4555555444
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=96.14 E-value=0.023 Score=61.26 Aligned_cols=107 Identities=14% Similarity=0.093 Sum_probs=56.5
Q ss_pred ccccchhhhhhhcccceeecccCCcc-eEeehhHHHHHHHHhhhhccccchhh---hhhhHHHHHHHHHHHHHHHhhccc
Q 041332 171 GVLTPTISVLSAVSGVQVKIRELHEN-YVVLISCVILVGLFSLQHHGTHRVAF---IFAPIVTTWLLCISSIGIYNIFQW 246 (753)
Q Consensus 171 gviTPAISVLSAVeGl~v~~p~~~~~-~vv~is~~ILv~LF~iQ~~GT~kvg~---~FgPIml~WF~~l~~~Gi~~I~~~ 246 (753)
-+++.|....+..+-+.-..|...+. +...+++++++++..+.-+|....++ .+..+.++=++.+.+.|+.+.
T Consensus 97 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~--- 173 (444)
T 3gia_A 97 YVISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI--- 173 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---
Confidence 34455555555444443222332221 23356788888888899999877666 444554444444455555543
Q ss_pred Ccceeee-cCHHHHHHHHHhcCcceeeeecceeeeecchhhhh
Q 041332 247 NPHIFNA-LSPVYMLKFFRSTGIDGWISLGGVVLSITGVETMF 288 (753)
Q Consensus 247 ~P~Vl~A-lnP~yai~f~~~~~~~g~~~LG~V~L~iTGaEALy 288 (753)
+|+-+.. ++|.-...+ +..+...+.+.+|-|+.-
T Consensus 174 ~~~~~~~~~~~~g~~~~--------~~~~~~~~~a~~G~e~~~ 208 (444)
T 3gia_A 174 HPSYVIPDLAPSAVSGM--------IFASAIFFLSYMGFGVIT 208 (444)
T ss_dssp CGGGTSCCCSHHHHHHH--------HHHHHHGGGGGTHHHHHH
T ss_pred ChhhcCCCCCCcchHHH--------HHHHHHHHHHHHhHHHHH
Confidence 4443332 333211111 223344567889999763
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=95.27 E-value=0.066 Score=57.58 Aligned_cols=79 Identities=16% Similarity=0.181 Sum_probs=39.3
Q ss_pred ehhHHHHHHHHhhhhccccchhhh---hhhHHHHHHHHHHHHHHHhhcccCccee-eecCHHHHHHHHHhcCcce-eeee
Q 041332 200 LISCVILVGLFSLQHHGTHRVAFI---FAPIVTTWLLCISSIGIYNIFQWNPHIF-NALSPVYMLKFFRSTGIDG-WISL 274 (753)
Q Consensus 200 ~is~~ILv~LF~iQ~~GT~kvg~~---FgPIml~WF~~l~~~Gi~~I~~~~P~Vl-~AlnP~yai~f~~~~~~~g-~~~L 274 (753)
.+++++++++..+--+|....+++ +.++.++=++.+.+.| +...+|+.+ ..++|.-.- +..+ +..+
T Consensus 127 ~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~------~~~~~~~~~ 197 (445)
T 3l1l_A 127 ITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFG---WFWFRGETYMAAWNVSGLG------TFGAIQSTL 197 (445)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTT---STTCCCCCCCCC-----------------HHHHH
T ss_pred HHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhChhhcccccCccCCc------cHHHHHHHH
Confidence 467777777888888888777775 4444433333333333 333355544 344442110 0111 2234
Q ss_pred cceeeeecchhhh
Q 041332 275 GGVVLSITGVETM 287 (753)
Q Consensus 275 G~V~L~iTGaEAL 287 (753)
..++.+.+|-|+.
T Consensus 198 ~~~~~af~G~e~~ 210 (445)
T 3l1l_A 198 NVTLWSFIGVESA 210 (445)
T ss_dssp HHHHHTTTTTTHH
T ss_pred HHHHHHHHhHHHH
Confidence 4456777888865
No 4
>3bkd_A Transmembrane domain of matrix protein M2; proton channel, M2TM, influenza A virus M2 protein, viral PR membrane protein; HET: MSE BOG; 2.05A {Synthetic} SCOP: j.35.1.1 PDB: 1mp6_A 1nyj_A 2kqt_A* 2kad_A* 3c9j_A*
Probab=21.40 E-value=44 Score=22.83 Aligned_cols=15 Identities=33% Similarity=0.906 Sum_probs=13.4
Q ss_pred chhhhhhhHHHHHHH
Q 041332 62 DEEIYGVLSFIFWTF 76 (753)
Q Consensus 62 ~~~vlGvlSLIfWtL 76 (753)
.++|+|+|-||.|-+
T Consensus 8 aa~iiGilHLiLwIl 22 (26)
T 3bkd_A 8 AASIMGILHLILWIL 22 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 578999999999976
No 5
>3lbw_A M2 protein; proton channel, M2TM, HOST CEL membrane, hydrogen ION transport, ionic channel, transmembr virion, transport protein; HET: XYL; 1.65A {Influenza a virus}
Probab=21.14 E-value=46 Score=22.21 Aligned_cols=15 Identities=27% Similarity=0.760 Sum_probs=13.3
Q ss_pred chhhhhhhHHHHHHH
Q 041332 62 DEEIYGVLSFIFWTF 76 (753)
Q Consensus 62 ~~~vlGvlSLIfWtL 76 (753)
.++|+|++-||.|-+
T Consensus 5 aa~iigIlHLiLwIl 19 (23)
T 3lbw_A 5 AASIIAILHLILWIL 19 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHH
Confidence 468999999999976
No 6
>3kcp_B Cellulosome anchoring protein, cohesin region; dockerin, X-module, carbohydrate metabolism, cell WALL biogenesis/degradation; 1.94A {Clostridium thermocellum atcc 27405} SCOP: b.2.2.2 PDB: 3p0d_B 2b59_A 4fl4_B
Probab=21.07 E-value=26 Score=34.49 Aligned_cols=13 Identities=23% Similarity=0.675 Sum_probs=7.6
Q ss_pred ccCcceeeecCHH
Q 041332 245 QWNPHIFNALSPV 257 (753)
Q Consensus 245 ~~~P~Vl~AlnP~ 257 (753)
+|||+||+|+||.
T Consensus 56 KYDP~VLqaV~p~ 68 (187)
T 3kcp_B 56 VYDPKVLMAVDPE 68 (187)
T ss_dssp ECCTTTEEEECTT
T ss_pred eEChhHeeecccC
Confidence 4566666666654
No 7
>2bm3_A Type 2 cohesin, scaffolding dockerin binding protein A; cellulosome, nuclear protein; 1.8A {Clostridium thermocellum} SCOP: b.2.2.2
Probab=20.43 E-value=27 Score=33.88 Aligned_cols=12 Identities=25% Similarity=0.783 Sum_probs=8.1
Q ss_pred ccCcceeeecCH
Q 041332 245 QWNPHIFNALSP 256 (753)
Q Consensus 245 ~~~P~Vl~AlnP 256 (753)
+|||+||+|.||
T Consensus 44 KYDP~VLqaVn~ 55 (166)
T 2bm3_A 44 VYDPKVLMAVDP 55 (166)
T ss_dssp ECCTTTEEEECT
T ss_pred EECccceEeecC
Confidence 466777777766
No 8
>1nrp_R Receptor based peptide NR'S; serine proteinase/receptor; 3.00A {Homo sapiens} PDB: 1nrn_R 1nrq_R*
Probab=16.54 E-value=46 Score=22.39 Aligned_cols=17 Identities=24% Similarity=0.548 Sum_probs=14.5
Q ss_pred hhHhhcCcCcccCcccc
Q 041332 319 AAFLTKHHEDIQRSFYK 335 (753)
Q Consensus 319 gA~ll~~p~~~~npFf~ 335 (753)
-++|++||++.-.|||.
T Consensus 4 rsfllrnpndkyepfwe 20 (26)
T 1nrp_R 4 RSFLLRNPNDKYEPFWE 20 (26)
T ss_pred hhhhhcCCCcccCcccc
Confidence 36899999999999985
No 9
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=15.06 E-value=5.9e+02 Score=28.08 Aligned_cols=33 Identities=12% Similarity=0.236 Sum_probs=20.2
Q ss_pred hhhccCCCCCccchh------------h---hhhHhHHHHHHHhhcch
Q 041332 286 TMFADLGHFSSLSIK------------V---AFTFLVYPCLILAYMGE 318 (753)
Q Consensus 286 ALyADmGHFg~~~Ir------------~---aw~~~V~PaL~LnY~GQ 318 (753)
..-+|...+.|++-. . +++....|..++.-+|=
T Consensus 225 ~~~~DysRy~~~~~~~~~~~~~~~~~~~~~g~~lG~~i~~~~~~~lG~ 272 (501)
T 2jln_A 225 VSIHDIVKECKVDPNASREGQTKADARYATAQWLGMVPASIIFGFIGA 272 (501)
T ss_dssp TTTHHHHTTBCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCcccccCCCCccccccchhhccchHHHHHHHHHHHHHHHHHHHHH
Confidence 447899999877654 2 23345556655555554
No 10
>3ghp_A Cellulosomal scaffoldin adaptor protein B; linker segments, beta barrel, alpha helix, beta flaps, structural protein; 2.49A {Acetivibrio cellulolyticus}
Probab=13.29 E-value=52 Score=33.27 Aligned_cols=13 Identities=23% Similarity=0.887 Sum_probs=0.0
Q ss_pred cccCcceeeecCH
Q 041332 244 FQWNPHIFNALSP 256 (753)
Q Consensus 244 ~~~~P~Vl~AlnP 256 (753)
++|||+||+|+||
T Consensus 46 IKYDP~vLQaVnp 58 (227)
T 3ghp_A 46 IKYDPTVLQAVNP 58 (227)
T ss_dssp EECCTTTEEEECT
T ss_pred eeeChhheecccC
Done!