Query 041332
Match_columns 753
No_of_seqs 198 out of 768
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 09:55:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041332.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041332hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bm3a1 b.2.2.2 (A:5-166) Scaf 17.4 16 0.0012 33.0 0.7 13 245-257 40-52 (162)
2 d2yvxa3 f.57.1.1 (A:276-448) M 17.1 31 0.0023 31.3 2.7 119 309-440 12-132 (173)
3 d2e74h1 f.23.27.1 (H:3-29) Pet 16.6 33 0.0024 21.8 1.8 20 479-498 5-24 (27)
4 d2h8pc1 f.14.1.1 (C:22-78) Pot 13.0 51 0.0037 24.7 2.4 42 307-350 13-54 (57)
5 d1jb0i_ f.23.17.1 (I:) Subunit 7.4 14 0.00099 25.7 -2.6 22 392-413 12-33 (38)
6 d1iray2 b.1.1.4 (Y:102-204) Ty 7.2 1.5E+02 0.011 23.5 3.4 26 577-602 57-82 (103)
7 d2bnma1 a.35.1.3 (A:6-76) Hydr 5.4 82 0.006 23.8 0.6 15 92-106 38-52 (71)
8 d2f5va2 d.16.1.1 (A:355-552) P 4.9 7.2E+02 0.053 21.8 7.3 43 560-604 113-155 (198)
9 d2a65a1 f.54.1.1 (A:5-513) Na( 4.8 3.9E+02 0.028 26.8 5.8 82 428-509 351-434 (509)
10 d3cx5d2 f.23.11.1 (D:261-307) 4.7 2.6E+02 0.019 20.0 3.0 24 430-453 13-37 (47)
No 1
>d2bm3a1 b.2.2.2 (A:5-166) Scaffolding dockerin binding protein A, SdbA {Clostridium thermocellum [TaxId: 1515]}
Probab=17.38 E-value=16 Score=33.00 Aligned_cols=13 Identities=23% Similarity=0.675 Sum_probs=6.7
Q ss_pred ccCcceeeecCHH
Q 041332 245 QWNPHIFNALSPV 257 (753)
Q Consensus 245 ~~~P~Vl~AlnP~ 257 (753)
+|||+||+|+||.
T Consensus 40 KYDP~vLQ~Vn~~ 52 (162)
T d2bm3a1 40 VYDPKVLMAVDPE 52 (162)
T ss_dssp ECCTTTEEEECTT
T ss_pred eeCHHHhcccccC
Confidence 3455555555553
No 2
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=17.12 E-value=31 Score=31.32 Aligned_cols=119 Identities=9% Similarity=0.122 Sum_probs=70.8
Q ss_pred HHHHHhhcch--hhHhhcCcCcccCcccccccccchHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHhcCCCccceEEecC
Q 041332 309 PCLILAYMGE--AAFLTKHHEDIQRSFYKAIPEAVFWPVFIVATFAAIVGSQAVISATFSIISQCCALNCFPSVKIIHTS 386 (753)
Q Consensus 309 PaL~LnY~GQ--gA~ll~~p~~~~npFf~~~P~~~~~P~~vlAtlAtIIASQA~Isg~FSl~~Qai~Lg~~Pr~~I~hTS 386 (753)
|-|++|.+|+ .|+++++=|+.-+-+-.+ ..+.|+ ++-++.-++||+. +++-+++++|-.-+-.. -
T Consensus 12 pWL~i~l~~~~~~a~ii~~Fe~~l~~~~~L---a~fiPl--i~~~gGN~G~Qs~-----ti~iR~La~g~i~~~~~---~ 78 (173)
T d2yvxa3 12 RWLVILILTGMVTSSILQGFESVLEAVTAL---AFYVPV--LLGTGGNTGNQSA-----TLIIRALATRDLDLRDW---R 78 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTTTTTTSC---CCCSHH--HHHHHHHHHHHHH-----HHHHHHHHTTCSCSSSH---H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--HhcCCchHHHHHH-----HHHHHHHhcccccchhH---H
Confidence 4455555555 466666544433322111 245665 5668888999986 47889999986432111 1
Q ss_pred CccCCceeehhhHHHHHHHhheeeEeecCchhhhhhhheeehhHHHHHHHHHHH
Q 041332 387 SKIYGQIYIPEVNWMLMCLCLAVTIGLRDTNMIGHAYGLAVTTVMLVTTCLMGQ 440 (753)
Q Consensus 387 ~~~~GQIYIP~vNw~Lmi~~i~vv~~F~~S~~la~AYGiAVt~~M~iTT~L~~~ 440 (753)
+...-++.+..+|=+.+...+.....+++...++.+=|++...+|++.+++=..
T Consensus 79 ~~l~kE~~vgll~G~~l~~i~~~~~~~~~~~~l~~vi~~sl~~~~~ia~~~G~~ 132 (173)
T d2yvxa3 79 RVFLKEMGVGLLLGLTLSFLLVGKVYWDGHPLLLPVVGVSLVLIVFFANLVGAM 132 (173)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223455778888877666665555556666666666666666666666655433
No 3
>d2e74h1 f.23.27.1 (H:3-29) PetN subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=16.62 E-value=33 Score=21.77 Aligned_cols=20 Identities=30% Similarity=0.963 Sum_probs=15.8
Q ss_pred ccHHHHHHHHHhhhhhhhhh
Q 041332 479 GWIPLVLSFIFMAVMYIWNY 498 (753)
Q Consensus 479 GW~pl~ia~~~~~iM~~W~~ 498 (753)
||+.|++-..-.+-|..|-+
T Consensus 5 gwv~llvvftwsiamvvwgr 24 (27)
T d2e74h1 5 GWVALLVVFTWSIAMVVWGR 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred hHhHHHHHhhheeeeEEEcc
Confidence 78888887777778888854
No 4
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=12.99 E-value=51 Score=24.71 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=28.3
Q ss_pred HHHHHHHhhcchhhHhhcCcCcccCcccccccccchHHHHHHHH
Q 041332 307 VYPCLILAYMGEAAFLTKHHEDIQRSFYKAIPEAVFWPVFIVAT 350 (753)
Q Consensus 307 V~PaL~LnY~GQgA~ll~~p~~~~npFf~~~P~~~~~P~~vlAt 350 (753)
++-++++--++=+.|+.++....+ -|.++|+.+.|-.+-+.|
T Consensus 13 ~~~~i~i~~~s~~~y~~E~~~~~~--~f~sip~a~WWaivT~TT 54 (57)
T d2h8pc1 13 VLLVIVLLAGSYLAVLAERGAPGA--QLITYPRALWWACETATT 54 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTTC--CCCSHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCc--cccccchhhhhheeeeec
Confidence 344455555666777887754333 499999999998775544
No 5
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=7.44 E-value=14 Score=25.75 Aligned_cols=22 Identities=23% Similarity=0.558 Sum_probs=16.3
Q ss_pred ceeehhhHHHHHHHhheeeEee
Q 041332 392 QIYIPEVNWMLMCLCLAVTIGL 413 (753)
Q Consensus 392 QIYIP~vNw~Lmi~~i~vv~~F 413 (753)
-|.||.+-|++-+.++.+....
T Consensus 12 wI~iPvv~wl~p~vvMglLFiy 33 (38)
T d1jb0i_ 12 WIFIPVVCWLMPTVVMGLLFLY 33 (38)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhee
Confidence 3789999999988777655433
No 6
>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=7.16 E-value=1.5e+02 Score=23.54 Aligned_cols=26 Identities=31% Similarity=0.652 Sum_probs=21.0
Q ss_pred CceEEEEEeccCCccEEEEEEEEeee
Q 041332 577 NERLLISRVGLKEYGMFRCIVRYGYK 602 (753)
Q Consensus 577 ~eR~~v~~l~~~~~g~~rv~~ryGf~ 602 (753)
+..+.+..+...+.|.|+|++++.+.
T Consensus 57 ~~~L~I~~v~~~D~G~Y~C~a~n~~~ 82 (103)
T d1iray2 57 KDRLIVMNVAEKHRGNYTCHASYTYL 82 (103)
T ss_dssp TTEEEESSCCGGGCEEEEEEEEEEET
T ss_pred CCEEEEcccccccCcEEEEEEEECcC
Confidence 45678888887788999999988664
No 7
>d2bnma1 a.35.1.3 (A:6-76) Hydroxypropylphosphonic acid epoxidase Fom4, N-terminal domain {Streptomyces wedmorensis [TaxId: 43759]}
Probab=5.36 E-value=82 Score=23.77 Aligned_cols=15 Identities=47% Similarity=0.643 Sum_probs=12.5
Q ss_pred cCCCCchHHhHHHHH
Q 041332 92 DDNGEGGTVALYSLL 106 (753)
Q Consensus 92 dn~GEGGi~AL~sL~ 106 (753)
=.|||||-+.|..|=
T Consensus 38 wengeggeltltqlg 52 (71)
T d2bnma1 38 WENGEGGELTLTQLG 52 (71)
T ss_dssp HHTTTCTTCBHHHHH
T ss_pred hhcCCCceeeHHHHH
Confidence 369999999998873
No 8
>d2f5va2 d.16.1.1 (A:355-552) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}
Probab=4.86 E-value=7.2e+02 Score=21.77 Aligned_cols=43 Identities=16% Similarity=0.146 Sum_probs=36.7
Q ss_pred eEEEEEEEEecccccCCCceEEEEEeccCCccEEEEEEEEeeecc
Q 041332 560 VLVFVCIKSVQVPHVSENERLLISRVGLKEYGMFRCIVRYGYKDL 604 (753)
Q Consensus 560 ~vvfl~i~~~~vP~V~~~eR~~v~~l~~~~~g~~rv~~ryGf~e~ 604 (753)
.+|.+...-+..|+ +++|++++.-..+.+|+=+++++|-+.|.
T Consensus 113 ~~v~l~~~ge~~P~--~~Nrv~l~~~~~D~~GiP~~~~~~~~~~n 155 (198)
T d2f5va2 113 LIVDWRFFGRTEPK--EENKLWFSDKITDAYNMPQPTFDFRFPAG 155 (198)
T ss_dssp GEEEEEEEECCCCC--TTCEEEEEEEEECTTSSEEEEEECCCCTT
T ss_pred cEEEEEEEecccCC--CCCEEEeCCCCcCCCCCCeeEEEEecCcc
Confidence 46888899999999 88999998655556799999999988887
No 9
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=4.77 E-value=3.9e+02 Score=26.76 Aligned_cols=82 Identities=11% Similarity=0.117 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhccccC--CccHHHHHHHHHhhhhhhhhhhHHHHHh
Q 041332 428 TTVMLVTTCLMGQVMITVWKQRIFIVVAFLLFFGSVELLYISACVYKIPE--GGWIPLVLSFIFMAVMYIWNYGTMKKHD 505 (753)
Q Consensus 428 t~~M~iTT~L~~~v~~~~w~~~~~~~~~~~~~f~~id~~ff~an~~Ki~~--GGW~pl~ia~~~~~iM~~W~~G~~~~~~ 505 (753)
+..-.+-++...+.=..-+++++...+...++++..=..+++.+.....| .+=+.+.+.+.+-++...|.||.++..+
T Consensus 351 s~i~~~e~~v~~l~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~l~~~~l~e~i~v~w~yg~~r~~~ 430 (509)
T d2a65a1 351 SSIAIMQPMIAFLEDELKLSRKHAVLWTAAIVFFSAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWE 430 (509)
T ss_dssp HHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHBTTHHHHHHHHTTTHHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHhccccchhHHHHHhcCCchhhhhhheeEEEEhhhhHHHHhcchHHHHHHHHHHHHHHHHHHHHHheeeeEecHHHHHH
Q ss_pred hhhh
Q 041332 506 FDME 509 (753)
Q Consensus 506 ~~~~ 509 (753)
...+
T Consensus 431 di~~ 434 (509)
T d2a65a1 431 EINR 434 (509)
T ss_dssp HHHT
T ss_pred HHHh
No 10
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.65 E-value=2.6e+02 Score=19.97 Aligned_cols=24 Identities=8% Similarity=0.092 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH-HHHhhhhhHHH
Q 041332 430 VMLVTTCLMGQVM-ITVWKQRIFIV 453 (753)
Q Consensus 430 ~M~iTT~L~~~v~-~~~w~~~~~~~ 453 (753)
+|++.++|+.+.. ...|+|+.+..
T Consensus 13 ~~~i~s~l~~~~~y~KR~kWs~lKs 37 (47)
T d3cx5d2 13 TVIILSSLYLLSIWVKKFKWAGIKT 37 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhcccccc
Done!