BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041333
         (513 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4HG6|A Chain A, Structure Of A Cellulose Synthase - Cellulose
           Translocation Intermediate
          Length = 802

 Score =  103 bits (256), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/313 (27%), Positives = 141/313 (45%), Gaps = 31/313 (9%)

Query: 36  LIVPLLNIAVFLCLIMSLMLLIERVYMSIVILLLKLSGRSPETRYKFQPMKEDVELGNSS 95
           L  P L+ +    L   L+  +E   +SI  L   LS   P  R   +P++ +       
Sbjct: 89  LPPPALDASFLFAL---LLFAVETFSISIFFLNGFLSA-DPTDRPFPRPLQPE------E 138

Query: 96  YPMVLVQIPMFNE-REVYQLSIGAACGLSWPSD-RLIIQVLDDSTD---------LTIKD 144
            P V + +P +NE  ++  +++ AA  + +P+  R ++   D  TD         L  K 
Sbjct: 139 LPTVDILVPSYNEPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMSPDPELAQKA 198

Query: 145 MVELECQRWASKGINIKYEVRDNRKGYKAGALREGMKRGYVKSCDFVVIFDADFQPESDF 204
                  +   + + + Y  R+  +  KAG +   ++R      + VV+FDAD  P  DF
Sbjct: 199 QERRRELQQLCRELGVVYSTRERNEHAKAGNMSAALER---LKGELVVVFDADHVPSRDF 255

Query: 205 LTRTIPFLVHNPQLALVQARWEFVNADE-----CLMTRLQEMSLDYHFTVEQEVGSSTHA 259
           L RT+ + V +P L LVQ    F+N D       L  R    +  ++  + + +     A
Sbjct: 256 LARTVGYFVEDPDLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGA 315

Query: 260 FFGFNGTAGVWRIAAVNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLGTVKVKNELPSTF 319
           FF   G+A V R  A++EAGG+   T  ED + A+    +GWK LY+    +    P TF
Sbjct: 316 FF--CGSAAVLRRRALDEAGGFAGETITEDAETALEIHSRGWKSLYIDRAMIAGLQPETF 373

Query: 320 KAYRYQQHRWSCG 332
            ++  Q+ RW+ G
Sbjct: 374 ASFIQQRGRWATG 386


>pdb|3SC7|X Chain X, First Crystal Structure Of An Endo-Inulinase, From
           Aspergillus Ficuum: Structural Analysis And Comparison
           With Other Gh32 Enzymes.
 pdb|3RWK|X Chain X, First Crystal Structure Of An Endo-Inulinase, From
           Aspergillus Ficuum: Structural Analysis And Comparison
           With Other Gh32 Enzymes
          Length = 516

 Score = 28.5 bits (62), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 10/36 (27%)

Query: 245 YHFTVEQ----------EVGSSTHAFFGFNGTAGVW 270
           YHFT +Q          ++GS+ H FF  N TA VW
Sbjct: 32  YHFTPDQYWMNEPNGLIKIGSTWHLFFQHNPTANVW 67


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.142    0.445 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,361,644
Number of Sequences: 62578
Number of extensions: 558945
Number of successful extensions: 1147
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1145
Number of HSP's gapped (non-prelim): 3
length of query: 513
length of database: 14,973,337
effective HSP length: 103
effective length of query: 410
effective length of database: 8,527,803
effective search space: 3496399230
effective search space used: 3496399230
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)