Query 041333
Match_columns 513
No_of_seqs 454 out of 3943
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 06:04:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041333.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041333hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11498 bcsA cellulose syntha 100.0 1.4E-47 3E-52 413.5 42.2 387 24-441 195-614 (852)
2 TIGR03030 CelA cellulose synth 100.0 3.7E-46 8E-51 406.1 48.0 393 23-439 65-501 (713)
3 PRK11204 N-glycosyltransferase 100.0 2.1E-42 4.6E-47 358.9 39.4 244 93-347 50-293 (420)
4 PRK14583 hmsR N-glycosyltransf 100.0 3E-42 6.6E-47 358.6 40.6 242 94-346 72-313 (444)
5 cd06437 CESA_CaSu_A2 Cellulose 100.0 3.1E-41 6.6E-46 321.9 24.9 232 97-333 1-232 (232)
6 TIGR03111 glyc2_xrt_Gpos1 puta 100.0 2.6E-39 5.7E-44 335.6 36.9 242 93-343 45-296 (439)
7 PRK05454 glucosyltransferase M 100.0 1.8E-37 3.9E-42 331.3 48.7 258 93-359 120-397 (691)
8 cd06427 CESA_like_2 CESA_like_ 100.0 1.9E-37 4.2E-42 297.4 24.4 237 97-342 1-239 (241)
9 COG1215 Glycosyltransferases, 100.0 3.7E-36 8E-41 314.3 34.0 236 96-340 53-291 (439)
10 PRK14716 bacteriophage N4 adso 100.0 3.6E-35 7.8E-40 303.5 37.7 241 93-342 62-333 (504)
11 cd04191 Glucan_BSP_ModH Glucan 100.0 2.2E-36 4.7E-41 289.6 24.5 230 99-335 1-253 (254)
12 cd06435 CESA_NdvC_like NdvC_li 100.0 4.3E-36 9.4E-41 287.0 24.5 234 100-340 1-235 (236)
13 TIGR03472 HpnI hopanoid biosyn 100.0 3.2E-35 6.8E-40 299.3 32.0 231 94-333 38-272 (373)
14 PLN02893 Cellulose synthase-li 100.0 3.7E-34 7.9E-39 299.8 38.7 303 51-361 56-523 (734)
15 cd06421 CESA_CelA_like CESA_Ce 100.0 2.4E-34 5.1E-39 274.4 23.4 230 97-336 1-233 (234)
16 PRK11234 nfrB bacteriophage N4 100.0 1.6E-32 3.4E-37 294.9 36.3 239 93-341 59-337 (727)
17 PF13641 Glyco_tranf_2_3: Glyc 100.0 1.9E-35 4E-40 281.1 10.6 226 97-332 1-228 (228)
18 cd02520 Glucosylceramide_synth 100.0 4.8E-34 1E-38 265.0 18.2 191 97-332 1-195 (196)
19 PRK15489 nfrB bacteriophage N4 100.0 1.9E-31 4.2E-36 282.7 35.3 241 93-342 67-346 (703)
20 cd04190 Chitin_synth_C C-termi 100.0 8.6E-34 1.9E-38 272.3 15.3 203 101-334 1-242 (244)
21 PLN02189 cellulose synthase 100.0 1.8E-30 3.9E-35 277.5 34.3 310 50-364 281-820 (1040)
22 PLN02195 cellulose synthase A 100.0 3.3E-30 7.1E-35 274.0 35.4 309 51-364 203-755 (977)
23 cd06434 GT2_HAS Hyaluronan syn 100.0 1.4E-31 3E-36 255.6 19.0 222 98-334 1-233 (235)
24 PLN02248 cellulose synthase-li 100.0 1.4E-29 3E-34 271.2 36.2 200 160-364 587-915 (1135)
25 PLN02190 cellulose synthase-li 100.0 1.9E-29 4.1E-34 262.9 34.9 370 52-439 51-640 (756)
26 PLN02638 cellulose synthase A 100.0 1.4E-29 3.1E-34 271.4 33.8 310 50-364 299-858 (1079)
27 TIGR03469 HonB hopene-associat 100.0 3.7E-29 7.9E-34 255.6 33.5 231 93-332 36-281 (384)
28 PLN02400 cellulose synthase 100.0 2.5E-29 5.4E-34 269.6 32.1 310 50-364 306-863 (1085)
29 cd06439 CESA_like_1 CESA_like_ 100.0 7.6E-30 1.6E-34 246.2 22.9 225 93-335 25-250 (251)
30 cd04192 GT_2_like_e Subfamily 100.0 1.2E-29 2.6E-34 240.9 22.9 222 101-332 1-229 (229)
31 PLN02915 cellulose synthase A 100.0 1.3E-28 2.8E-33 263.4 32.8 309 51-364 238-822 (1044)
32 PLN02436 cellulose synthase A 100.0 1.3E-28 2.8E-33 263.1 32.0 310 50-364 315-874 (1094)
33 cd02525 Succinoglycan_BP_ExoA 100.0 4.7E-28 1E-32 232.9 23.7 230 98-340 1-234 (249)
34 PF03142 Chitin_synth_2: Chiti 100.0 8.3E-28 1.8E-32 246.5 26.6 241 95-337 23-378 (527)
35 cd02510 pp-GalNAc-T pp-GalNAc- 99.9 3.3E-26 7.2E-31 226.7 20.9 208 100-316 1-227 (299)
36 cd04184 GT2_RfbC_Mx_like Myxoc 99.9 2.5E-26 5.4E-31 213.9 18.0 197 97-312 1-199 (202)
37 PF03552 Cellulose_synt: Cellu 99.9 1.1E-25 2.4E-30 234.3 20.5 199 160-363 168-503 (720)
38 cd04195 GT2_AmsE_like GT2_AmsE 99.9 1.2E-25 2.7E-30 209.1 17.5 197 100-312 1-199 (201)
39 cd06438 EpsO_like EpsO protein 99.9 8.7E-26 1.9E-30 207.1 15.8 180 101-292 1-183 (183)
40 cd06436 GlcNAc-1-P_transferase 99.9 5.1E-25 1.1E-29 203.4 18.1 179 101-289 1-191 (191)
41 COG2943 MdoH Membrane glycosyl 99.9 9.2E-22 2E-26 193.8 38.7 265 98-374 145-430 (736)
42 cd06433 GT_2_WfgS_like WfgS an 99.9 1.9E-23 4.1E-28 193.8 16.5 192 100-313 1-193 (202)
43 PLN02726 dolichyl-phosphate be 99.9 1E-22 2.2E-27 195.5 21.4 211 94-318 6-222 (243)
44 cd02526 GT2_RfbF_like RfbF is 99.9 1.2E-23 2.7E-28 200.9 14.9 199 101-318 1-208 (237)
45 cd04185 GT_2_like_b Subfamily 99.9 7.1E-23 1.5E-27 190.8 18.4 177 101-320 1-179 (202)
46 cd04186 GT_2_like_c Subfamily 99.9 6.5E-23 1.4E-27 184.1 17.1 163 101-314 1-165 (166)
47 cd04196 GT_2_like_d Subfamily 99.9 4.9E-23 1.1E-27 193.2 16.2 199 100-311 1-200 (214)
48 cd02522 GT_2_like_a GT_2_like_ 99.9 2.7E-22 5.9E-27 189.4 21.1 184 99-312 1-184 (221)
49 cd06442 DPM1_like DPM1_like re 99.9 2.1E-22 4.5E-27 190.6 19.7 202 101-318 1-207 (224)
50 cd06913 beta3GnTL1_like Beta 1 99.9 7.1E-22 1.5E-26 186.6 21.0 200 101-312 1-207 (219)
51 cd06420 GT2_Chondriotin_Pol_N 99.9 4.4E-22 9.5E-27 182.0 19.0 176 101-313 1-180 (182)
52 PF13632 Glyco_trans_2_3: Glyc 99.9 3.2E-22 7E-27 185.1 17.9 142 190-333 1-143 (193)
53 PRK10073 putative glycosyl tra 99.9 2.9E-22 6.3E-27 199.9 18.3 202 95-311 4-213 (328)
54 PRK10018 putative glycosyl tra 99.9 3E-21 6.5E-26 187.5 22.0 225 95-340 3-231 (279)
55 cd06423 CESA_like CESA_like is 99.9 2.7E-22 5.9E-27 181.0 13.4 180 101-289 1-180 (180)
56 COG1216 Predicted glycosyltran 99.9 3.2E-21 6.9E-26 191.2 22.3 213 96-318 2-224 (305)
57 PRK10063 putative glycosyl tra 99.9 2.8E-20 6E-25 178.5 20.9 190 97-312 1-194 (248)
58 PTZ00260 dolichyl-phosphate be 99.9 5.5E-19 1.2E-23 176.5 28.9 206 94-310 67-288 (333)
59 cd04188 DPG_synthase DPG_synth 99.9 3.7E-20 8.1E-25 173.8 18.7 199 101-316 1-208 (211)
60 PF13506 Glyco_transf_21: Glyc 99.8 3.2E-20 6.8E-25 167.8 14.6 154 169-331 15-175 (175)
61 TIGR01556 rhamnosyltran L-rham 99.8 6.4E-20 1.4E-24 180.1 15.3 200 104-318 1-205 (281)
62 PF10111 Glyco_tranf_2_2: Glyc 99.8 1.4E-18 2.9E-23 170.2 20.8 204 100-314 1-222 (281)
63 PF00535 Glycos_transf_2: Glyc 99.8 2.7E-20 5.8E-25 166.8 7.9 169 100-279 1-169 (169)
64 cd04179 DPM_DPG-synthase_like 99.8 7.3E-19 1.6E-23 161.1 15.5 179 101-295 1-184 (185)
65 cd04187 DPM1_like_bac Bacteria 99.8 3E-18 6.6E-23 156.6 16.0 175 101-294 1-179 (181)
66 PRK13915 putative glucosyl-3-p 99.8 1.4E-17 3.1E-22 164.1 17.2 197 94-307 28-238 (306)
67 KOG2547 Ceramide glucosyltrans 99.8 5.4E-18 1.2E-22 161.3 13.4 232 94-334 82-317 (431)
68 PRK10714 undecaprenyl phosphat 99.8 2E-15 4.4E-20 150.4 31.7 192 96-309 5-199 (325)
69 cd00761 Glyco_tranf_GTA_type G 99.7 8.3E-16 1.8E-20 134.9 15.7 153 101-304 1-155 (156)
70 KOG2978 Dolichol-phosphate man 99.7 4E-15 8.7E-20 128.6 16.7 201 97-311 3-210 (238)
71 KOG2571 Chitin synthase/hyalur 99.6 3.7E-15 8.1E-20 158.5 17.7 147 186-334 439-598 (862)
72 cd02511 Beta4Glucosyltransfera 99.6 8.6E-14 1.9E-18 132.3 15.2 105 98-221 1-105 (229)
73 COG0463 WcaA Glycosyltransfera 99.4 5.6E-13 1.2E-17 123.8 11.5 106 96-212 2-107 (291)
74 KOG3738 Predicted polypeptide 99.4 4.6E-13 1E-17 128.6 8.8 205 94-311 121-344 (559)
75 KOG3737 Predicted polypeptide 99.4 1.3E-12 2.8E-17 125.2 11.0 212 93-311 151-384 (603)
76 KOG3736 Polypeptide N-acetylga 99.3 1.3E-12 2.9E-17 135.1 6.8 212 93-313 138-368 (578)
77 KOG2977 Glycosyltransferase [G 99.3 2.6E-10 5.7E-15 105.7 17.7 208 98-318 68-291 (323)
78 cd02514 GT13_GLCNAC-TI GT13_GL 99.2 5E-10 1.1E-14 110.2 15.0 172 99-303 2-198 (334)
79 PF13712 Glyco_tranf_2_5: Glyc 99.0 3.5E-09 7.5E-14 99.1 12.3 181 99-320 1-203 (217)
80 cd00899 b4GalT Beta-4-Galactos 98.6 2.8E-07 6.1E-12 84.8 11.6 178 98-337 3-200 (219)
81 KOG3588 Chondroitin synthase 1 98.1 7.8E-05 1.7E-09 72.0 14.9 205 93-312 225-435 (494)
82 COG4092 Predicted glycosyltran 98.1 0.00029 6.2E-09 65.3 16.9 196 97-298 2-215 (346)
83 PF03452 Anp1: Anp1; InterPro 97.9 0.00011 2.3E-09 69.9 10.7 117 93-210 21-166 (269)
84 PF03071 GNT-I: GNT-I family; 97.9 0.00015 3.2E-09 73.6 12.1 187 94-308 90-297 (434)
85 PF05679 CHGN: Chondroitin N-a 97.5 0.0028 6E-08 67.0 16.3 202 96-311 246-464 (499)
86 PF09488 Osmo_MPGsynth: Mannos 97.5 0.00071 1.5E-08 65.8 10.2 123 97-229 50-205 (381)
87 PRK14503 mannosyl-3-phosphogly 97.3 0.0027 5.8E-08 61.9 11.6 190 96-300 50-283 (393)
88 TIGR02460 osmo_MPGsynth mannos 97.3 0.003 6.6E-08 61.1 11.6 191 96-301 49-283 (381)
89 PF02709 Glyco_transf_7C: N-te 97.3 0.00032 7E-09 53.9 3.9 49 263-311 19-70 (78)
90 KOG3916 UDP-Gal:glucosylcerami 97.1 0.0033 7.2E-08 60.7 9.4 179 98-339 152-350 (372)
91 PF13704 Glyco_tranf_2_4: Glyc 97.0 0.0049 1.1E-07 49.6 8.5 81 106-200 1-84 (97)
92 PRK14502 bifunctional mannosyl 96.7 0.017 3.7E-07 62.0 11.8 103 97-209 55-186 (694)
93 PF11316 Rhamno_transf: Putati 96.5 0.024 5.3E-07 53.5 10.6 93 113-212 45-139 (234)
94 PF03214 RGP: Reversibly glyco 96.1 0.007 1.5E-07 58.5 4.4 97 98-212 9-116 (348)
95 PF01644 Chitin_synth_1: Chiti 96.0 0.086 1.9E-06 46.3 10.2 43 166-212 117-163 (163)
96 PF06306 CgtA: Beta-1,4-N-acet 95.8 0.031 6.7E-07 53.8 7.4 103 98-208 88-196 (347)
97 KOG1413 N-acetylglucosaminyltr 95.8 0.15 3.2E-06 49.8 11.9 175 95-290 65-257 (411)
98 PF09258 Glyco_transf_64: Glyc 95.5 0.049 1.1E-06 52.1 7.7 169 99-298 1-181 (247)
99 PF01762 Galactosyl_T: Galacto 95.5 0.13 2.9E-06 47.2 10.3 175 110-304 4-192 (195)
100 PF11397 GlcNAc: Glycosyltrans 94.6 0.23 5E-06 49.7 9.8 210 99-313 2-261 (343)
101 cd04182 GT_2_like_f GT_2_like_ 94.2 0.41 9E-06 43.1 10.0 93 107-213 24-117 (186)
102 TIGR03310 matur_ygfJ molybdenu 94.1 0.51 1.1E-05 42.8 10.4 96 107-217 23-120 (188)
103 PF02434 Fringe: Fringe-like; 93.7 0.31 6.7E-06 46.8 8.4 108 187-308 86-204 (252)
104 TIGR03584 PseF pseudaminic aci 93.5 1.3 2.8E-05 41.6 12.1 158 107-281 22-189 (222)
105 cd02540 GT2_GlmU_N_bac N-termi 92.9 1.5 3.3E-05 41.0 11.9 97 102-214 20-117 (229)
106 KOG1476 Beta-1,3-glucuronyltra 92.8 1.5 3.3E-05 42.4 11.3 102 96-207 86-201 (330)
107 cd00218 GlcAT-I Beta1,3-glucur 92.3 2 4.3E-05 39.9 11.0 101 97-208 1-116 (223)
108 PLN02917 CMP-KDO synthetase 91.7 8.4 0.00018 37.8 15.6 183 109-307 72-266 (293)
109 PLN02458 transferase, transfer 91.6 2.9 6.4E-05 40.9 11.7 103 97-208 112-223 (346)
110 PF13896 Glyco_transf_49: Glyc 91.4 2.6 5.6E-05 41.9 11.8 54 173-229 116-172 (317)
111 PF04666 Glyco_transf_54: N-Ac 91.4 2.8 6.1E-05 41.1 11.7 120 95-215 50-197 (297)
112 cd02516 CDP-ME_synthetase CDP- 90.8 2.3 4.9E-05 39.5 10.3 103 102-216 22-125 (218)
113 PF13733 Glyco_transf_7N: N-te 90.6 0.36 7.9E-06 40.9 4.1 76 97-203 47-127 (136)
114 cd04181 NTP_transferase NTP_tr 89.4 4.1 8.9E-05 37.6 10.8 97 102-212 23-119 (217)
115 cd02503 MobA MobA catalyzes th 89.3 2.6 5.7E-05 37.8 9.1 85 107-212 24-109 (181)
116 PLN03180 reversibly glycosylat 89.3 1.3 2.7E-05 43.5 7.1 33 175-210 84-123 (346)
117 TIGR03202 pucB xanthine dehydr 89.3 7 0.00015 35.4 12.0 100 107-216 24-125 (190)
118 COG1212 KdsB CMP-2-keto-3-deox 89.1 19 0.00041 33.5 14.2 179 110-306 29-219 (247)
119 PF12804 NTP_transf_3: MobA-li 88.9 3.6 7.8E-05 36.0 9.5 96 103-216 19-115 (160)
120 COG1213 Predicted sugar nucleo 88.2 1.5 3.2E-05 40.9 6.5 90 108-211 30-120 (239)
121 PF02364 Glucan_synthase: 1,3- 88.2 1.9 4.2E-05 47.5 8.4 182 171-359 275-482 (817)
122 PLN03153 hypothetical protein; 88.1 1.5 3.3E-05 45.6 7.2 99 186-308 209-314 (537)
123 PF11735 CAP59_mtransfer: Cryp 88.0 13 0.00028 35.3 12.9 119 101-223 4-146 (241)
124 cd06915 NTP_transferase_WcbM_l 86.7 8.8 0.00019 35.5 11.3 97 102-212 23-119 (223)
125 PRK00317 mobA molybdopterin-gu 86.2 6.9 0.00015 35.6 10.0 86 107-213 28-115 (193)
126 KOG4179 Lysyl hydrolase/glycos 85.9 1.4 3.1E-05 44.0 5.3 109 97-210 3-133 (568)
127 cd06422 NTP_transferase_like_1 85.2 9 0.0002 35.6 10.5 101 95-211 19-120 (221)
128 cd02513 CMP-NeuAc_Synthase CMP 84.9 18 0.0004 33.4 12.5 96 107-214 24-125 (223)
129 PLN03133 beta-1,3-galactosyltr 84.4 36 0.00078 37.0 15.4 190 96-308 384-594 (636)
130 PRK14353 glmU bifunctional N-a 83.1 17 0.00036 38.1 12.5 103 102-218 27-130 (446)
131 COG1209 RfbA dTDP-glucose pyro 83.0 27 0.00058 33.6 12.2 195 102-320 25-229 (286)
132 PF05045 RgpF: Rhamnan synthes 82.7 35 0.00075 36.3 14.5 122 95-225 263-406 (498)
133 cd04183 GT2_BcE_like GT2_BcbE_ 82.4 15 0.00033 34.3 10.8 99 102-212 23-122 (231)
134 PRK02726 molybdopterin-guanine 82.1 13 0.00029 34.1 10.0 88 107-213 31-119 (200)
135 cd04189 G1P_TT_long G1P_TT_lon 82.1 24 0.00052 33.0 12.1 96 102-212 25-121 (236)
136 TIGR02665 molyb_mobA molybdopt 82.0 11 0.00023 33.9 9.3 87 107-213 25-114 (186)
137 KOG3917 Beta-1,4-galactosyltra 81.3 9.4 0.0002 35.1 8.2 101 172-304 122-225 (310)
138 TIGR01173 glmU UDP-N-acetylglu 80.8 19 0.00042 37.5 12.0 103 102-222 22-125 (451)
139 PRK14355 glmU bifunctional N-a 80.5 21 0.00045 37.5 12.1 98 102-214 25-123 (459)
140 cd02509 GDP-M1P_Guanylyltransf 79.7 32 0.0007 33.3 12.3 95 95-201 21-116 (274)
141 cd02518 GT2_SpsF SpsF is a gly 79.6 22 0.00047 33.4 10.8 96 102-214 18-115 (233)
142 PF05060 MGAT2: N-acetylglucos 79.5 13 0.00029 37.2 9.4 51 96-147 30-80 (356)
143 PLN03193 beta-1,3-galactosyltr 79.5 69 0.0015 32.8 14.5 160 131-311 181-353 (408)
144 PRK13368 3-deoxy-manno-octulos 78.9 27 0.00059 32.8 11.3 93 107-216 25-118 (238)
145 TIGR00466 kdsB 3-deoxy-D-manno 78.8 42 0.00091 31.7 12.5 186 103-307 19-222 (238)
146 PF00483 NTP_transferase: Nucl 78.7 9.8 0.00021 36.0 8.2 99 102-212 24-126 (248)
147 KOG1022 Acetylglucosaminyltran 78.6 8.7 0.00019 39.9 7.9 117 93-226 439-557 (691)
148 cd06425 M1P_guanylylT_B_like_N 77.8 14 0.00031 34.6 8.9 101 102-214 25-126 (233)
149 TIGR01207 rmlA glucose-1-phosp 77.6 15 0.00033 35.9 9.3 100 101-212 23-122 (286)
150 PF05212 DUF707: Protein of un 77.6 6.8 0.00015 37.7 6.4 198 95-320 39-257 (294)
151 KOG2287 Galactosyltransferases 77.5 50 0.0011 33.3 13.2 195 97-307 95-302 (349)
152 cd02508 ADP_Glucose_PP ADP-glu 77.5 17 0.00038 33.1 9.2 111 95-214 18-136 (200)
153 PRK13385 2-C-methyl-D-erythrit 76.0 27 0.00059 32.7 10.3 98 107-215 28-126 (230)
154 cd06431 GT8_LARGE_C LARGE cata 75.4 55 0.0012 31.9 12.4 100 98-203 2-113 (280)
155 PRK15480 glucose-1-phosphate t 74.9 30 0.00064 34.0 10.5 100 101-212 27-126 (292)
156 PRK05450 3-deoxy-manno-octulos 74.8 48 0.001 31.2 11.8 97 103-215 22-119 (245)
157 cd02517 CMP-KDO-Synthetase CMP 73.8 55 0.0012 30.6 11.9 99 102-218 20-121 (239)
158 cd06430 GT8_like_2 GT8_like_2 72.4 83 0.0018 31.0 12.7 119 99-222 3-132 (304)
159 PRK14352 glmU bifunctional N-a 72.0 62 0.0014 34.2 12.9 101 102-215 26-127 (482)
160 KOG2264 Exostosin EXT1L [Signa 71.6 8.9 0.00019 40.1 5.9 93 98-205 650-742 (907)
161 PRK14356 glmU bifunctional N-a 70.3 42 0.00091 35.1 11.1 104 102-221 27-131 (456)
162 PRK14360 glmU bifunctional N-a 69.9 64 0.0014 33.7 12.4 99 102-215 23-122 (450)
163 COG2068 Uncharacterized MobA-r 69.8 64 0.0014 29.6 10.4 94 107-215 29-125 (199)
164 PRK14358 glmU bifunctional N-a 69.7 55 0.0012 34.6 11.9 99 102-216 29-128 (481)
165 PF11051 Mannosyl_trans3: Mann 68.9 39 0.00085 32.7 9.7 21 187-207 90-112 (271)
166 PRK14357 glmU bifunctional N-a 68.6 63 0.0014 33.7 12.0 94 102-214 22-116 (448)
167 PF14097 SpoVAE: Stage V sporu 67.9 88 0.0019 27.7 11.0 91 131-230 3-95 (180)
168 cd06428 M1P_guanylylT_A_like_N 67.5 51 0.0011 31.4 10.2 108 95-214 20-128 (257)
169 PRK09382 ispDF bifunctional 2- 66.8 57 0.0012 33.3 10.8 90 107-213 31-122 (378)
170 PF04724 Glyco_transf_17: Glyc 66.8 1.1E+02 0.0024 31.0 12.6 123 98-225 80-215 (356)
171 TIGR03552 F420_cofC 2-phospho- 65.2 79 0.0017 28.5 10.6 51 159-212 65-116 (195)
172 PRK14354 glmU bifunctional N-a 64.7 82 0.0018 32.9 12.0 95 102-213 24-119 (458)
173 cd02538 G1P_TT_short G1P_TT_sh 63.6 1.3E+02 0.0028 28.1 13.9 103 96-212 21-123 (240)
174 PRK00155 ispD 2-C-methyl-D-ery 62.8 89 0.0019 29.0 10.7 95 107-215 29-124 (227)
175 PF03213 Pox_P35: Poxvirus P35 62.4 80 0.0017 31.0 10.0 44 186-230 117-161 (325)
176 cd02523 PC_cytidylyltransferas 62.3 57 0.0012 30.3 9.3 94 96-209 19-114 (229)
177 cd02524 G1P_cytidylyltransfera 62.0 1E+02 0.0022 29.2 11.2 37 172-212 104-141 (253)
178 cd06426 NTP_transferase_like_2 61.3 99 0.0022 28.3 10.7 98 102-214 23-120 (220)
179 TIGR00453 ispD 2-C-methyl-D-er 60.2 91 0.002 28.7 10.2 94 107-215 25-119 (217)
180 COG1211 IspD 4-diphosphocytidy 60.1 99 0.0022 29.1 10.1 96 106-212 29-125 (230)
181 KOG0916 1,3-beta-glucan syntha 58.7 1.9E+02 0.0041 34.5 13.4 138 171-311 1051-1199(1679)
182 PF03360 Glyco_transf_43: Glyc 57.6 15 0.00032 34.0 4.1 35 173-207 59-97 (207)
183 cd04198 eIF-2B_gamma_N The N-t 57.5 1.1E+02 0.0024 28.1 10.2 97 102-212 25-124 (214)
184 PF01697 Glyco_transf_92: Glyc 56.1 73 0.0016 30.7 9.2 114 99-222 3-144 (285)
185 PRK14489 putative bifunctional 55.6 80 0.0017 32.1 9.6 40 171-213 79-119 (366)
186 COG1208 GCD1 Nucleoside-diphos 55.4 1.2E+02 0.0027 30.6 10.8 100 102-215 26-125 (358)
187 PF02348 CTP_transf_3: Cytidyl 54.7 1.6E+02 0.0034 26.9 10.8 94 107-217 22-119 (217)
188 TIGR00454 conserved hypothetic 54.5 1.2E+02 0.0027 27.3 9.7 96 103-216 22-118 (183)
189 cd00505 Glyco_transf_8 Members 54.2 1.8E+02 0.004 27.4 11.4 113 101-221 3-128 (246)
190 PRK09451 glmU bifunctional N-a 53.7 2E+02 0.0043 30.1 12.5 94 102-212 27-121 (456)
191 COG0746 MobA Molybdopterin-gua 52.1 1.5E+02 0.0032 27.1 9.8 89 107-216 27-116 (192)
192 PLN02728 2-C-methyl-D-erythrit 51.7 1.4E+02 0.0031 28.5 10.1 93 109-214 52-145 (252)
193 KOG2791 N-acetylglucosaminyltr 51.4 1.2E+02 0.0027 30.0 9.2 49 98-147 118-166 (455)
194 PLN03183 acetylglucosaminyltra 49.7 3.2E+02 0.0069 28.4 17.9 108 93-205 74-193 (421)
195 COG1512 Beta-propeller domains 49.6 29 0.00064 33.5 4.9 45 107-153 46-90 (271)
196 TIGR01105 galF UTP-glucose-1-p 49.0 2.6E+02 0.0056 27.5 11.7 108 95-213 23-155 (297)
197 TIGR01208 rmlA_long glucose-1- 48.6 1.6E+02 0.0034 29.6 10.5 98 102-212 24-121 (353)
198 PF02485 Branch: Core-2/I-Bran 47.2 98 0.0021 29.1 8.3 114 99-223 1-124 (244)
199 cd02541 UGPase_prokaryotic Pro 46.9 1.7E+02 0.0037 27.8 10.0 104 102-213 25-146 (267)
200 TIGR02623 G1P_cyt_trans glucos 45.8 2.7E+02 0.0059 26.4 11.2 37 172-212 105-141 (254)
201 PF07507 WavE: WavE lipopolysa 43.6 1.1E+02 0.0023 30.4 7.9 46 177-225 88-134 (311)
202 COG1861 SpsF Spore coat polysa 41.4 2.1E+02 0.0045 26.8 8.7 96 101-212 21-117 (241)
203 PRK15171 lipopolysaccharide 1, 41.2 3.8E+02 0.0082 26.8 12.0 102 97-203 24-136 (334)
204 TIGR01099 galU UTP-glucose-1-p 39.6 2.4E+02 0.0053 26.6 9.8 103 102-213 25-146 (260)
205 TIGR02584 cas_NE0113 CRISPR-as 39.1 1.6E+02 0.0035 27.1 7.6 43 101-143 1-46 (209)
206 PHA02688 ORF059 IMV protein VP 37.9 2.9E+02 0.0063 27.2 9.6 43 187-230 116-159 (323)
207 PRK14359 glmU bifunctional N-a 37.7 2.8E+02 0.006 28.6 10.6 89 102-209 24-115 (430)
208 PF01128 IspD: 2-C-methyl-D-er 36.6 3.6E+02 0.0078 25.2 10.3 167 107-309 26-200 (221)
209 COG1099 Predicted metal-depend 35.9 3.5E+02 0.0075 25.4 9.2 97 99-213 130-230 (254)
210 PF09837 DUF2064: Uncharacteri 34.8 2.7E+02 0.0058 23.2 9.1 61 158-224 33-94 (122)
211 PRK14490 putative bifunctional 34.2 3.1E+02 0.0067 27.8 10.0 86 107-212 198-284 (369)
212 COG1158 Rho Transcription term 33.1 2.3E+02 0.0051 28.3 8.1 89 100-198 177-270 (422)
213 cd04194 GT8_A4GalT_like A4GalT 32.9 4.2E+02 0.009 24.8 10.5 87 110-203 13-111 (248)
214 PF01501 Glyco_transf_8: Glyco 32.2 76 0.0017 29.5 4.9 17 186-202 97-113 (250)
215 KOG0799 Branching enzyme [Carb 31.4 5.8E+02 0.013 26.7 11.4 106 98-212 104-218 (439)
216 PRK00576 molybdopterin-guanine 30.1 3.9E+02 0.0084 23.6 9.4 41 172-212 59-100 (178)
217 TIGR01479 GMP_PMI mannose-1-ph 28.9 3.2E+02 0.007 28.8 9.3 100 101-211 25-128 (468)
218 cd04197 eIF-2B_epsilon_N The N 28.8 4.6E+02 0.0099 24.0 10.1 108 95-214 20-129 (217)
219 PF11181 YflT: Heat induced st 28.3 1.1E+02 0.0024 24.6 4.5 32 102-134 2-33 (103)
220 PF09623 Cas_NE0113: CRISPR-as 27.5 2E+02 0.0044 27.0 6.6 32 101-132 4-36 (224)
221 KOG1971 Lysyl hydroxylase [Pos 27.3 69 0.0015 32.6 3.6 92 110-212 106-200 (415)
222 PF06866 DUF1256: Protein of u 25.0 3.1E+02 0.0068 24.3 6.9 80 110-197 10-95 (163)
223 cd01453 vWA_transcription_fact 24.9 3.7E+02 0.0081 24.0 7.8 39 152-197 131-169 (183)
224 COG1207 GlmU N-acetylglucosami 24.7 8.1E+02 0.017 25.5 10.6 103 94-212 18-121 (460)
225 PLN02331 phosphoribosylglycina 24.1 5.7E+02 0.012 23.6 11.0 93 103-207 4-98 (207)
226 cd02537 GT8_Glycogenin Glycoge 23.9 4.3E+02 0.0093 24.8 8.4 17 187-203 89-105 (240)
227 cd06432 GT8_HUGT1_C_like The C 23.3 6.5E+02 0.014 23.9 11.1 96 109-210 13-117 (248)
228 PRK06027 purU formyltetrahydro 22.9 7.1E+02 0.015 24.2 10.7 17 105-121 96-112 (286)
229 PRK00844 glgC glucose-1-phosph 22.2 4.6E+02 0.01 26.9 8.9 107 95-212 25-140 (407)
230 PF10138 vWA-TerF-like: vWA fo 22.0 6.2E+02 0.014 23.3 9.7 101 107-212 84-187 (200)
231 PF03314 DUF273: Protein of un 21.5 76 0.0016 29.3 2.4 34 186-223 40-74 (222)
232 TIGR00639 PurN phosphoribosylg 20.7 6.4E+02 0.014 22.8 11.3 92 104-207 6-99 (190)
233 PLN00176 galactinol synthase 20.7 5.3E+02 0.011 25.9 8.4 17 187-203 112-128 (333)
234 PRK00560 molybdopterin-guanine 20.6 6.3E+02 0.014 22.8 8.5 35 172-209 78-113 (196)
235 PRK10122 GalU regulator GalF; 20.5 8E+02 0.017 23.9 11.7 108 95-213 23-155 (297)
236 cd02507 eIF-2B_gamma_N_like Th 20.5 6.6E+02 0.014 22.9 9.0 97 102-209 25-123 (216)
No 1
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=100.00 E-value=1.4e-47 Score=413.45 Aligned_cols=387 Identities=24% Similarity=0.384 Sum_probs=265.9
Q ss_pred HHHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCCCCcccccCCCccccccCCCCCCcEEE
Q 041333 24 QLSLLWGWIKAPLIVPLLNIAVFLCLIMSLMLLIERVYMSIVILL--LKLSGRSPETRYKFQPMKEDVELGNSSYPMVLV 101 (513)
Q Consensus 24 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~P~VsI 101 (513)
.++..|..+|...++|.-. .+..++++++++++.|.++.... +.......+ + ..|.+.+ .+..|+|||
T Consensus 195 ~~~~rY~~WR~~~tL~~~~---~~~~~~~~~ll~ae~~~~~~~~lg~~~~~~~~~r-~--~~~~~~~----~~~~P~VsV 264 (852)
T PRK11498 195 TVSCRYIWWRYTSTLNWDD---PVSLVCGLILLFAETYAWIVLVLGYFQVVWPLNR-Q--PVPLPKD----MSLWPTVDI 264 (852)
T ss_pred HHHHHHHHHHHheeeCCCc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-C--CCCCCcc----cCCCCcEEE
Confidence 5556667788888888543 22333344455555555433221 111111111 1 1133222 456899999
Q ss_pred EEeccCCh-HHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHH
Q 041333 102 QIPMFNER-EVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGM 180 (513)
Q Consensus 102 iIP~yne~-~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl 180 (513)
+||+|||+ +.+++++.++++||||+++++|+|+||+++++.+++++ ..+++|+.++++.|+|++|+|.|+
T Consensus 265 iIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~---------~~~v~yI~R~~n~~gKAGnLN~aL 335 (852)
T PRK11498 265 FVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQ---------EVGVKYIARPTHEHAKAGNINNAL 335 (852)
T ss_pred EEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHH---------HCCcEEEEeCCCCcchHHHHHHHH
Confidence 99999999 67889999999999999888787777754444444543 247899999988888999999999
Q ss_pred HhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCc--hHHHHHHh--hhcchhhHHhhhccc
Q 041333 181 KRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADEC--LMTRLQEM--SLDYHFTVEQEVGSS 256 (513)
Q Consensus 181 ~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~--~~~~~~~~--~~~~~~~~~~~~~~~ 256 (513)
+++ +||||+++|||++++||+|++++..|++||++++||+++.+.|++.. ...+.+.. +....+...+.+.+.
T Consensus 336 ~~a---~GEyIavlDAD~ip~pdfL~~~V~~f~~dP~VglVQtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~~iq~g~~~ 412 (852)
T PRK11498 336 KYA---KGEFVAIFDCDHVPTRSFLQMTMGWFLKDKKLAMMQTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLVQDGNDM 412 (852)
T ss_pred HhC---CCCEEEEECCCCCCChHHHHHHHHHHHhCCCeEEEEcceeccCCchHHHhhHHHhhcccchhHHHHHHHhHHHh
Confidence 999 99999999999999999999999998789999999999988876531 11111111 111222333333222
Q ss_pred CCCccccccceeeeeHHHHHHcCCCCCCCccchHHHHHHHhhCCCeEEEecccccccccCcCHHHHHHHHHhhhhchhHH
Q 041333 257 THAFFGFNGTAGVWRIAAVNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLGTVKVKNELPSTFKAYRYQQHRWSCGPANL 336 (513)
Q Consensus 257 ~~~~~~~~G~~~~~rr~~l~~~gg~~~~~~~ED~~l~~rl~~~G~~i~~~~~~~~~~~~p~~~~~~~~Qr~RW~~G~~~~ 336 (513)
.+. ..++|+++++||++++++|||++++++||.|++.|++++||++.|++++.+.++.|+|++++.+||.||++|.+|+
T Consensus 413 ~~a-~~~~Gs~aviRReaLeeVGGfd~~titED~dlslRL~~~Gyrv~yl~~~~a~glaPesl~~~~~QR~RWarG~lQi 491 (852)
T PRK11498 413 WDA-TFFCGSCAVIRRKPLDEIGGIAVETVTEDAHTSLRLHRRGYTSAYMRIPQAAGLATESLSAHIGQRIRWARGMVQI 491 (852)
T ss_pred hcc-cccccceeeeEHHHHHHhcCCCCCccCccHHHHHHHHHcCCEEEEEeccceeEECCCCHHHHHHHHHHHHHHHHHH
Confidence 222 3368999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---c----------ccchhH------
Q 041333 337 FRKMVMEIVRNKKVSLWKKVHVIYSFFFVRKIIAHIITFVLYCVVLPATVVIPE---V----------QVPKSI------ 397 (513)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~---~----------~~p~~~------ 397 (513)
++++ +.+..+++++.+|++++..++.+..-+ |-+. .++.|+.+++-. + .+|...
T Consensus 492 ~r~~--~pl~~~gL~~~qRl~y~~~~l~~l~g~-~~l~----~l~~Pl~~l~~gi~~i~a~~~~i~~y~lP~~~~~~l~~ 564 (852)
T PRK11498 492 FRLD--NPLTGKGLKLAQRLCYANAMLHFLSGI-PRLI----FLTAPLAFLLLHAYIIYAPALMIALFVLPHMIHASLTN 564 (852)
T ss_pred HHHh--ChhccCCCCHHHHHHHHHHHHHHHHHH-HHHH----HHHHHHHHHHhCChheeCChHHHHHHHHHHHHHHHHHH
Confidence 9875 345577899999997665543221111 1111 111222222100 0 011100
Q ss_pred ------HHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCccceEEeeeccccc
Q 041333 398 ------HLLVFWI-LFENVMSLHRTMATFIGLLEGVRVNEWIVTEKLGGAL 441 (513)
Q Consensus 398 ------~~~~~~~-~~~~~~s~~~~~a~~~~l~~~~~~~~~~~T~K~g~~~ 441 (513)
...++|. +++..+++.....++.++++. ++..|+||+|.|..+
T Consensus 565 ~~~~g~~r~~~wseiye~v~a~~l~~~~~~~ll~p-~~~~F~VTpKg~~~~ 614 (852)
T PRK11498 565 SRIQGKYRHSFWSEIYETVLAWYIAPPTTVALFNP-HKGKFNVTAKGGLVE 614 (852)
T ss_pred HHhcCcchHhHHHHHHHHHHHHHHHHHHHHHHcCc-cCCCcccCCCCcccc
Confidence 0112333 456666777777788888853 456799999965443
No 2
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=100.00 E-value=3.7e-46 Score=406.07 Aligned_cols=393 Identities=26% Similarity=0.425 Sum_probs=265.0
Q ss_pred HHHHHHHHHhhhhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcCCCCCcccccCCCccccccCCCCCCcEE
Q 041333 23 VQLSLLWGWIKAPLIVPLLNIAVFLCLIMSLMLLIERVYMSIVILL--LKLSGRSPETRYKFQPMKEDVELGNSSYPMVL 100 (513)
Q Consensus 23 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~P~Vs 100 (513)
..+...|.++|...++|.- .......+++++++++|.++..+. .....+.+++. .+.+.+ +++.|+||
T Consensus 65 ~~~~~~y~~wr~~~tl~~~---~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~r~~---~~~~~~----~~~~P~Vs 134 (713)
T TIGR03030 65 VFISLRYLWWRLTETLPFD---NTLNFIFGTLLLLAELYSITILLLGYFQTVRPLDRTP---VPLPLD----PEEWPTVD 134 (713)
T ss_pred HHHHHHHHHhheeeecCCC---ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCc---cCCCCC----cccCCeeE
Confidence 3455666677888888852 223344455555555554443222 11111211111 122222 46789999
Q ss_pred EEEeccCCh-HHHHHHHHHHHcCCCCCCeeEEEEEeC-CCchhHH---HHHH------HHHHHhhccCccEEEEEcCCCC
Q 041333 101 VQIPMFNER-EVYQLSIGAACGLSWPSDRLIIQVLDD-STDLTIK---DMVE------LECQRWASKGINIKYEVRDNRK 169 (513)
Q Consensus 101 IiIP~yne~-~~l~~~l~sl~~q~yp~~~i~IiV~Dd-s~D~t~~---~l~~------~~~~~~~~~~~~v~~~~~~~~~ 169 (513)
|+||+|||+ +.+++|++++.+||||.++++|+|+|| |+|+|.. +..+ ...+++. ++.+++|+.++++.
T Consensus 135 ViIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~~~~~~~~~~~~~~l~-~~~~v~yi~r~~n~ 213 (713)
T TIGR03030 135 VFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPEQAEAAQRREELKEFC-RKLGVNYITRPRNV 213 (713)
T ss_pred EEEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhhhhhhhhhHHHHHHHH-HHcCcEEEECCCCC
Confidence 999999998 566889999999999977666666555 7887621 0100 1112221 23589999999888
Q ss_pred CCChhHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCc---h--HHHHHHhhhc
Q 041333 170 GYKAGALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADEC---L--MTRLQEMSLD 244 (513)
Q Consensus 170 g~Ka~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~---~--~~~~~~~~~~ 244 (513)
|+|++|+|.|++++ +||||+++|||++++||+|++++..|++||++++||+++.+.|++.. . ..+... +..
T Consensus 214 ~~KAgnLN~al~~a---~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~-e~~ 289 (713)
T TIGR03030 214 HAKAGNINNALKHT---DGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTFRRMPN-ENE 289 (713)
T ss_pred CCChHHHHHHHHhc---CCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHHHHhhh-HHH
Confidence 88999999999999 99999999999999999999999999889999999999888776421 1 011110 111
Q ss_pred chhhHHhhhcccCCCccccccceeeeeHHHHHHcCCCCCCCccchHHHHHHHhhCCCeEEEecccccccccCcCHHHHHH
Q 041333 245 YHFTVEQEVGSSTHAFFGFNGTAGVWRIAAVNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLGTVKVKNELPSTFKAYRY 324 (513)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~gg~~~~~~~ED~~l~~rl~~~G~~i~~~~~~~~~~~~p~~~~~~~~ 324 (513)
..+...+.+.+..+. ..++|+++++||++++++|||++++++||++++.|++++||++.|++++.++++.|+|++++.+
T Consensus 290 ~f~~~i~~g~~~~~~-~~~~Gs~~~iRR~al~~iGGf~~~~vtED~~l~~rL~~~G~~~~y~~~~~~~g~~p~sl~~~~~ 368 (713)
T TIGR03030 290 LFYGLIQDGNDFWNA-AFFCGSAAVLRREALDEIGGIAGETVTEDAETALKLHRRGWNSAYLDRPLIAGLAPETLSGHIG 368 (713)
T ss_pred HHHHHHHHHHhhhCC-eeecCceeEEEHHHHHHcCCCCCCCcCcHHHHHHHHHHcCCeEEEeccccccccCCCCHHHHHH
Confidence 122223333232232 3467999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhchhHHHHhhccccccccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-------------
Q 041333 325 QQHRWSCGPANLFRKMVMEIVRNKKVSLWKKVHVIYSFFFVRKIIAHIITFVLYCVVLPATVVIPEV------------- 391 (513)
Q Consensus 325 Qr~RW~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~~~------------- 391 (513)
||.||++|.+|+++.. +.+..+++++.+|++++.+.+.+.. ++.. + ..++.|+.+++..+
T Consensus 369 Qr~RWa~G~~qi~~~~--~pl~~~gl~~~qrl~y~~~~~~~~~---~~~~-~-~~~~~P~~~l~~~~~~~~~~~~~~~~~ 441 (713)
T TIGR03030 369 QRIRWAQGMMQIFRLD--NPLLKRGLSFPQRLCYLNAMLFWFF---PLPR-V-IFLTAPLAYLFFGLNIFVASALEILAY 441 (713)
T ss_pred HHHHHhcChHHHHhhh--CccccCCCCHHHHHHHHHHHHHHHH---HHHH-H-HHHHHHHHHHHhCCcceeCCHHHHHHH
Confidence 9999999999999754 4555678999999987665432111 1110 0 01112222221110
Q ss_pred ccchhHH------------HHHHHH-HHHHHHHHHHHHHHHHHHhcCCCccceEEeeeccc
Q 041333 392 QVPKSIH------------LLVFWI-LFENVMSLHRTMATFIGLLEGVRVNEWIVTEKLGG 439 (513)
Q Consensus 392 ~~p~~~~------------~~~~~~-~~~~~~s~~~~~a~~~~l~~~~~~~~~~~T~K~g~ 439 (513)
.+|.... ..++|. +++..+++....+++.++++. ++.+|.||||.|.
T Consensus 442 ~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~F~VT~Kg~~ 501 (713)
T TIGR03030 442 ALPHMLHSLLTNSYLFGRVRWPFWSEVYETVLAVYLLPPVLVTLLNP-KKPKFNVTPKGEL 501 (713)
T ss_pred HHHHHHHHHHHHHHHcCCeecchHHHHHHHHHHHHHHHHHHHHHhCc-CCCCceecCCCcc
Confidence 0110000 112232 556667788888888888853 3457999999553
No 3
>PRK11204 N-glycosyltransferase; Provisional
Probab=100.00 E-value=2.1e-42 Score=358.85 Aligned_cols=244 Identities=23% Similarity=0.354 Sum_probs=206.5
Q ss_pred CCCCCcEEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCC
Q 041333 93 NSSYPMVLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYK 172 (513)
Q Consensus 93 ~~~~P~VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~K 172 (513)
.++.|+|||+||+|||++.+++|++|+.+|+||+.+++| |+|+|+|+|.+. +++.. ++..++++++++++.| |
T Consensus 50 ~~~~p~vsViIp~yne~~~i~~~l~sl~~q~yp~~eiiV-vdD~s~d~t~~~-l~~~~----~~~~~v~~i~~~~n~G-k 122 (420)
T PRK11204 50 LKEYPGVSILVPCYNEGENVEETISHLLALRYPNYEVIA-INDGSSDNTGEI-LDRLA----AQIPRLRVIHLAENQG-K 122 (420)
T ss_pred cCCCCCEEEEEecCCCHHHHHHHHHHHHhCCCCCeEEEE-EECCCCccHHHH-HHHHH----HhCCcEEEEEcCCCCC-H
Confidence 356789999999999999999999999999999766544 677788888764 34333 3346788888776766 9
Q ss_pred hhHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHhh
Q 041333 173 AGALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQE 252 (513)
Q Consensus 173 a~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 252 (513)
++|+|.|++.+ ++|+++++|+|+.++||+++++++.++++|++++|++.....|. .++.++.+..++...+.....
T Consensus 123 a~aln~g~~~a---~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 198 (420)
T PRK11204 123 ANALNTGAAAA---RSEYLVCIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRIRNR-STLLGRIQVGEFSSIIGLIKR 198 (420)
T ss_pred HHHHHHHHHHc---CCCEEEEECCCCCCChhHHHHHHHHHHhCCCeEEEECCceeccc-hhHHHHHHHHHHHHhhhHHHH
Confidence 99999999999 99999999999999999999999999889999999998887775 456677766555444433333
Q ss_pred hcccCCCccccccceeeeeHHHHHHcCCCCCCCccchHHHHHHHhhCCCeEEEecccccccccCcCHHHHHHHHHhhhhc
Q 041333 253 VGSSTHAFFGFNGTAGVWRIAAVNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLGTVKVKNELPSTFKAYRYQQHRWSCG 332 (513)
Q Consensus 253 ~~~~~~~~~~~~G~~~~~rr~~l~~~gg~~~~~~~ED~~l~~rl~~~G~~i~~~~~~~~~~~~p~~~~~~~~Qr~RW~~G 332 (513)
..+..+...+.+|+++++||++++++|||+++..+||.|++.|++++||++.|.|++.++++.|+|++++.+||.||++|
T Consensus 199 ~~~~~~~~~~~~G~~~~~rr~~l~~vgg~~~~~~~ED~~l~~rl~~~G~~i~~~p~~~~~~~~p~t~~~~~~Qr~RW~~G 278 (420)
T PRK11204 199 AQRVYGRVFTVSGVITAFRKSALHEVGYWSTDMITEDIDISWKLQLRGWDIRYEPRALCWILMPETLKGLWKQRLRWAQG 278 (420)
T ss_pred HHHHhCCceEecceeeeeeHHHHHHhCCCCCCcccchHHHHHHHHHcCCeEEeccccEEEeECcccHHHHHHHHHHHhcC
Confidence 44445556667899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhccccccc
Q 041333 333 PANLFRKMVMEIVRN 347 (513)
Q Consensus 333 ~~~~~~~~~~~~~~~ 347 (513)
.+|.++++.+..+..
T Consensus 279 ~~~~l~~~~~~~~~~ 293 (420)
T PRK11204 279 GAEVLLKNFRRLWRW 293 (420)
T ss_pred HHHHHHHHHHHhcCc
Confidence 999998886665543
No 4
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=100.00 E-value=3e-42 Score=358.60 Aligned_cols=242 Identities=22% Similarity=0.325 Sum_probs=205.9
Q ss_pred CCCCcEEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCCh
Q 041333 94 SSYPMVLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKA 173 (513)
Q Consensus 94 ~~~P~VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka 173 (513)
+..|.|||+||+|||++.+++|++|+++|+||+.+++| |+|+|+|+|.+.+ ++..+ +..++++++.+++.| |+
T Consensus 72 ~~~p~vsViIP~yNE~~~i~~~l~sll~q~yp~~eIiv-VdDgs~D~t~~~~-~~~~~----~~~~v~vv~~~~n~G-ka 144 (444)
T PRK14583 72 KGHPLVSILVPCFNEGLNARETIHAALAQTYTNIEVIA-INDGSSDDTAQVL-DALLA----EDPRLRVIHLAHNQG-KA 144 (444)
T ss_pred CCCCcEEEEEEeCCCHHHHHHHHHHHHcCCCCCeEEEE-EECCCCccHHHHH-HHHHH----hCCCEEEEEeCCCCC-HH
Confidence 45799999999999999999999999999999866544 7777888887754 33333 345688887776666 99
Q ss_pred hHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHhhh
Q 041333 174 GALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQEV 253 (513)
Q Consensus 174 ~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~ 253 (513)
+|+|.|++.+ ++|+++++|||++++||++++++..++++|++++|++.....|. .++.++.+..++...+...+..
T Consensus 145 ~AlN~gl~~a---~~d~iv~lDAD~~~~~d~L~~lv~~~~~~~~~g~v~g~~~~~~~-~~~~~~~~~~e~~~~~~~~~~~ 220 (444)
T PRK14583 145 IALRMGAAAA---RSEYLVCIDGDALLDKNAVPYLVAPLIANPRTGAVTGNPRIRTR-STLIGRVQVGEFSSIIGLIKRT 220 (444)
T ss_pred HHHHHHHHhC---CCCEEEEECCCCCcCHHHHHHHHHHHHhCCCeEEEEccceecCC-CcchhhHHHHHHHHHHHHHHHH
Confidence 9999999999 99999999999999999999999999889999999998877665 5677777766655544444444
Q ss_pred cccCCCccccccceeeeeHHHHHHcCCCCCCCccchHHHHHHHhhCCCeEEEecccccccccCcCHHHHHHHHHhhhhch
Q 041333 254 GSSTHAFFGFNGTAGVWRIAAVNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLGTVKVKNELPSTFKAYRYQQHRWSCGP 333 (513)
Q Consensus 254 ~~~~~~~~~~~G~~~~~rr~~l~~~gg~~~~~~~ED~~l~~rl~~~G~~i~~~~~~~~~~~~p~~~~~~~~Qr~RW~~G~ 333 (513)
....+.....+|+++++||++++++|||+++.++||.|++.|++++||++.|.|++.++++.|+|++++++||.||++|.
T Consensus 221 ~~~~g~~~~~sG~~~~~rr~al~~vGg~~~~~i~ED~dl~~rl~~~G~~i~~~p~a~~~~~~p~t~~~~~~Qr~RW~~G~ 300 (444)
T PRK14583 221 QRVYGQVFTVSGVVAAFRRRALADVGYWSPDMITEDIDISWKLQLKHWSVFFEPRGLCWILMPETLRGLWKQRLRWAQGG 300 (444)
T ss_pred HHHhCCceEecCceeEEEHHHHHHcCCCCCCcccccHHHHHHHHHcCCeEEEeeccEEeeeCCCCHHHHHHHHHHHhCcH
Confidence 44556666678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhcccccc
Q 041333 334 ANLFRKMVMEIVR 346 (513)
Q Consensus 334 ~~~~~~~~~~~~~ 346 (513)
.|++.++.+..+.
T Consensus 301 ~~~~~~~~~~~~~ 313 (444)
T PRK14583 301 AEVFLKNMFKLWR 313 (444)
T ss_pred HHHHHHHHHHHhC
Confidence 9999887665543
No 5
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=100.00 E-value=3.1e-41 Score=321.92 Aligned_cols=232 Identities=56% Similarity=0.957 Sum_probs=200.5
Q ss_pred CcEEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHH
Q 041333 97 PMVLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGAL 176 (513)
Q Consensus 97 P~VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~al 176 (513)
|+||||||+|||++.|.++|+|+++|+||.++++|+|+|||+|+|.+.+ ++..+++...+.+++++.+.+++|+|++|+
T Consensus 1 p~vSViIp~yNe~~~l~~~L~sl~~q~~~~~~~eIiVvD~s~D~t~~~~-~~~~~~~~~~~~~i~~~~~~~~~G~k~~a~ 79 (232)
T cd06437 1 PMVTVQLPVFNEKYVVERLIEAACALDYPKDRLEIQVLDDSTDETVRLA-REIVEEYAAQGVNIKHVRRADRTGYKAGAL 79 (232)
T ss_pred CceEEEEecCCcHHHHHHHHHHHHhcCCCccceEEEEEECCCCcHHHHH-HHHHHHHhhcCCceEEEECCCCCCCchHHH
Confidence 6799999999999999999999999999987777778888999998854 444455555567888888887888899999
Q ss_pred HHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHhhhccc
Q 041333 177 REGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQEVGSS 256 (513)
Q Consensus 177 n~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (513)
|.|++.+ ++|||+++|+|+.++|++|+++...+ ++|++++|+++....+.+.++..+.+.....+.+...+.....
T Consensus 80 n~g~~~a---~~~~i~~~DaD~~~~~~~l~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (232)
T cd06437 80 AEGMKVA---KGEYVAIFDADFVPPPDFLQKTPPYF-ADPKLGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSS 155 (232)
T ss_pred HHHHHhC---CCCEEEEEcCCCCCChHHHHHhhhhh-cCCCeEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhh
Confidence 9999999 99999999999999999999977776 7899999999988888777888887776666555444433333
Q ss_pred CCCccccccceeeeeHHHHHHcCCCCCCCccchHHHHHHHhhCCCeEEEecccccccccCcCHHHHHHHHHhhhhch
Q 041333 257 THAFFGFNGTAGVWRIAAVNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLGTVKVKNELPSTFKAYRYQQHRWSCGP 333 (513)
Q Consensus 257 ~~~~~~~~G~~~~~rr~~l~~~gg~~~~~~~ED~~l~~rl~~~G~~i~~~~~~~~~~~~p~~~~~~~~Qr~RW~~G~ 333 (513)
.....+++|+++++||++++++|||++....||++++.|+..+||++.|.|++.++++.|++++++++||.||++|.
T Consensus 156 ~~~~~~~~g~~~~~rr~~~~~vgg~~~~~~~ED~~l~~rl~~~G~~~~~~~~~~v~~~~~~~~~~~~~q~~rW~~g~ 232 (232)
T cd06437 156 TGLFFNFNGTAGVWRKECIEDAGGWNHDTLTEDLDLSYRAQLKGWKFVYLDDVVVPAELPASMSAYRSQQHRWSKGP 232 (232)
T ss_pred cCCeEEeccchhhhhHHHHHHhCCCCCCcchhhHHHHHHHHHCCCeEEEeccceeeeeCCcCHHHHHHHHHHhccCC
Confidence 44444568999999999999999999988999999999999999999999999999999999999999999999983
No 6
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=100.00 E-value=2.6e-39 Score=335.57 Aligned_cols=242 Identities=14% Similarity=0.186 Sum_probs=187.6
Q ss_pred CCCCCcEEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEE-EeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCC
Q 041333 93 NSSYPMVLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQV-LDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGY 171 (513)
Q Consensus 93 ~~~~P~VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV-~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~ 171 (513)
+++.|+|||+||+|||++.+.+|++|+.+|+||+++++|+| +|+|+|+|.+.+ ++..+ +..++.+...+++ +|
T Consensus 45 ~~~~P~vsVIIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il-~~~~~----~~~~v~v~~~~~~-~G 118 (439)
T TIGR03111 45 IGKLPDITIIIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVF-CRAQN----EFPGLSLRYMNSD-QG 118 (439)
T ss_pred cCCCCCEEEEEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHH-HHHHH----hCCCeEEEEeCCC-CC
Confidence 35689999999999999999999999999999987665554 455888887743 33323 2345655555545 45
Q ss_pred ChhHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCC----Cc----hHHHHHHhhh
Q 041333 172 KAGALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNAD----EC----LMTRLQEMSL 243 (513)
Q Consensus 172 Ka~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~----~~----~~~~~~~~~~ 243 (513)
|++|+|.|++.+ ++|||+++|+|+.++||+++++++.++++|++++++|........ .+ +..+.+..++
T Consensus 119 ka~AlN~gl~~s---~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y 195 (439)
T TIGR03111 119 KAKALNAAIYNS---IGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEY 195 (439)
T ss_pred HHHHHHHHHHHc---cCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHH
Confidence 999999999999 999999999999999999999999998799999998887532110 01 1111111111
Q ss_pred cchhhHHhhhcccCCCccccccceeeeeHHHHHHcCCCCCCCccchHHHHHHHhh-CCCeEEEecccccccccCcCHHHH
Q 041333 244 DYHFTVEQEVGSSTHAFFGFNGTAGVWRIAAVNEAGGWKDRTTVEDMDLAVRASL-KGWKFLYLGTVKVKNELPSTFKAY 322 (513)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~gg~~~~~~~ED~~l~~rl~~-~G~~i~~~~~~~~~~~~p~~~~~~ 322 (513)
...+.......+..+.....+|+++++||++++++|||++++++||+|++.|+++ .|+++.++|++.++++.|+|++++
T Consensus 196 ~~~~l~~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf~~~~i~ED~~l~~rl~~~~g~kv~~~~~a~~~~~~p~t~~~~ 275 (439)
T TIGR03111 196 AQAFLAGRNFESQVNSLFTLSGAFSAFRRETILKTQLYNSETVGEDTDMTFQIRELLDGKVYLCENAIFYVDPIDGLNKL 275 (439)
T ss_pred HHHHHhhhHHHHhcCCeEEEccHHHhhhHHHHHHhCCCCCCCcCccHHHHHHHHHhcCCeEEECCCCEEEEECCcCHHHH
Confidence 1111111122233445556789999999999999999999999999999999974 699999999999999999999999
Q ss_pred HHHHHhhhhchhHHHHhhccc
Q 041333 323 RYQQHRWSCGPANLFRKMVME 343 (513)
Q Consensus 323 ~~Qr~RW~~G~~~~~~~~~~~ 343 (513)
++||.||.+|.+|+++++.+.
T Consensus 276 ~~QR~RW~rG~~qv~~~~~~~ 296 (439)
T TIGR03111 276 YTQRQRWQRGELEVSHMFFES 296 (439)
T ss_pred HHHHHHHhccHHHHHHHHHhh
Confidence 999999999999999776543
No 7
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=100.00 E-value=1.8e-37 Score=331.35 Aligned_cols=258 Identities=20% Similarity=0.212 Sum_probs=205.5
Q ss_pred CCCCCcEEEEEeccCChH-----HHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHH----HHHHHHhhccCccEEEE
Q 041333 93 NSSYPMVLVQIPMFNERE-----VYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMV----ELECQRWASKGINIKYE 163 (513)
Q Consensus 93 ~~~~P~VsIiIP~yne~~-----~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~----~~~~~~~~~~~~~v~~~ 163 (513)
.+..|+|+|+||+|||+. .++.+++|+.+|+|++ +++|+|+||++|+...... ++.++++. .+.++.|.
T Consensus 120 ~~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~-~~e~~vLdD~~d~~~~~~e~~~~~~L~~~~~-~~~~i~yr 197 (691)
T PRK05454 120 PPPEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGA-HFDFFILSDTRDPDIAAAEEAAWLELRAELG-GEGRIFYR 197 (691)
T ss_pred CCCCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCC-CEEEEEEECCCChhHHHHHHHHHHHHHHhcC-CCCcEEEE
Confidence 456789999999999993 6899999999999974 4666788887776654332 23444542 25689999
Q ss_pred EcCCCCCCChhHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhh
Q 041333 164 VRDNRKGYKAGALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSL 243 (513)
Q Consensus 164 ~~~~~~g~Ka~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~ 243 (513)
++++|.|.|++|+|.+++... .++||++++|||+++++|++.+++..|++||++|+||+++...|.+ ++++++|++..
T Consensus 198 ~R~~n~~~KaGNl~~~~~~~~-~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~vGlVQt~~~~~n~~-slfaR~qqf~~ 275 (691)
T PRK05454 198 RRRRNVGRKAGNIADFCRRWG-GAYDYMVVLDADSLMSGDTLVRLVRLMEANPRAGLIQTLPVAVGAD-TLFARLQQFAT 275 (691)
T ss_pred ECCcCCCccHHHHHHHHHhcC-CCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcCEEEEeCCccCcCCC-CHHHHHHHHHH
Confidence 999999999999999999831 1779999999999999999999999998899999999999888874 89999987654
Q ss_pred cchhhHHhhhccc-CCCccccccceeeeeHHHHHHcC---------CCCCCCccchHHHHHHHhhCCCeEEEecc-cccc
Q 041333 244 DYHFTVEQEVGSS-THAFFGFNGTAGVWRIAAVNEAG---------GWKDRTTVEDMDLAVRASLKGWKFLYLGT-VKVK 312 (513)
Q Consensus 244 ~~~~~~~~~~~~~-~~~~~~~~G~~~~~rr~~l~~~g---------g~~~~~~~ED~~l~~rl~~~G~~i~~~~~-~~~~ 312 (513)
.........+.+. .++...+.|+|.++|++++.+++ +|+++.++||++.+.+++++||++.|+|+ ..++
T Consensus 276 ~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~GyrV~~~pd~~~~~ 355 (691)
T PRK05454 276 RVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGWGVWLAPDLPGSY 355 (691)
T ss_pred HHHHHHHHhhhhhhccCccccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHHCCCEEEEcCcccccc
Confidence 4322222211111 12233477999999999998764 56667899999999999999999999999 5789
Q ss_pred cccCcCHHHHHHHHHhhhhchhHHHHhhccccccccccCcchhhHHH
Q 041333 313 NELPSTFKAYRYQQHRWSCGPANLFRKMVMEIVRNKKVSLWKKVHVI 359 (513)
Q Consensus 313 ~~~p~~~~~~~~Qr~RW~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (513)
++.|+|++++.+||.||++|++|.++.. ..+++++.+|++++
T Consensus 356 ee~P~tl~~~~~qr~RW~~G~lQ~l~~l-----~~~gl~~~~R~~~l 397 (691)
T PRK05454 356 EELPPNLLDELKRDRRWCQGNLQHLRLL-----LAKGLHPVSRLHFL 397 (691)
T ss_pred ccCCCCHHHHHHHHHHHHhchHHHHHHH-----HhcCCCHHHHHHHH
Confidence 9999999999999999999999988653 24567777777654
No 8
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=100.00 E-value=1.9e-37 Score=297.43 Aligned_cols=237 Identities=22% Similarity=0.333 Sum_probs=187.1
Q ss_pred CcEEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEE-EEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhH
Q 041333 97 PMVLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQ-VLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGA 175 (513)
Q Consensus 97 P~VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~Ii-V~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~a 175 (513)
|.|||+||+|||++.+.++|+|+++|+||++.++|+ |+|+|+|+|.+.+ ++... ....++.++.+.++. ||+.|
T Consensus 1 p~vsIiIp~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~-~~~~~---~~~~~i~~~~~~~~~-G~~~a 75 (241)
T cd06427 1 PVYTILVPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAA-RALRL---PSIFRVVVVPPSQPR-TKPKA 75 (241)
T ss_pred CeEEEEEecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHH-HHhcc---CCCeeEEEecCCCCC-chHHH
Confidence 689999999999999999999999999997655554 4566888887754 32211 122345555444444 49999
Q ss_pred HHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcC-CCeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHhhhc
Q 041333 176 LREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHN-PQLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQEVG 254 (513)
Q Consensus 176 ln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~-~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (513)
+|.|++++ +||||+++|+|+.++|+++++++..++++ +++++++++....+...++.++.....+...+.......
T Consensus 76 ~n~g~~~a---~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (241)
T cd06427 76 CNYALAFA---RGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGL 152 (241)
T ss_pred HHHHHHhc---CCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 99999999999999999999999999654 899999998877776566666554433333332222222
Q ss_pred ccCCCccccccceeeeeHHHHHHcCCCCCCCccchHHHHHHHhhCCCeEEEecccccccccCcCHHHHHHHHHhhhhchh
Q 041333 255 SSTHAFFGFNGTAGVWRIAAVNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLGTVKVKNELPSTFKAYRYQQHRWSCGPA 334 (513)
Q Consensus 255 ~~~~~~~~~~G~~~~~rr~~l~~~gg~~~~~~~ED~~l~~rl~~~G~~i~~~~~~~~~~~~p~~~~~~~~Qr~RW~~G~~ 334 (513)
...+....++|+++++||++++++|||++...+||+|++.|+.++|+++.+++.. ++++.|++++.+.+||.||.+|.+
T Consensus 153 ~~~~~~~~~~g~~~~~rr~~~~~vgg~~~~~~~eD~~l~~rl~~~G~r~~~~~~~-~~~~~~~~~~~~~~q~~Rw~~g~~ 231 (241)
T cd06427 153 ARLGLPIPLGGTSNHFRTDVLRELGGWDPFNVTEDADLGLRLARAGYRTGVLNST-TLEEANNALGNWIRQRSRWIKGYM 231 (241)
T ss_pred HhcCCeeecCCchHHhhHHHHHHcCCCCcccchhhHHHHHHHHHCCceEEEeccc-ccccCcHhHHHHHHHHHHHhccHH
Confidence 2333444467899999999999999999888899999999999999999999875 478899999999999999999999
Q ss_pred HHHHhhcc
Q 041333 335 NLFRKMVM 342 (513)
Q Consensus 335 ~~~~~~~~ 342 (513)
|++..|++
T Consensus 232 ~~~~~~~~ 239 (241)
T cd06427 232 QTWLVHMR 239 (241)
T ss_pred HHHHHHhh
Confidence 99977644
No 9
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=3.7e-36 Score=314.25 Aligned_cols=236 Identities=31% Similarity=0.460 Sum_probs=197.9
Q ss_pred CCcEEEEEeccCChH-HHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChh
Q 041333 96 YPMVLVQIPMFNERE-VYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAG 174 (513)
Q Consensus 96 ~P~VsIiIP~yne~~-~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~ 174 (513)
.|+|+|+||+|||++ ++++|++|+.+||||+.+++| |+|+|+|++.+.+ ++..+++ +.+++....++++++|++
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~dyp~~eviv-v~d~~~d~~~~~~-~~~~~~~---~~~~~~~~~~~~~~gK~~ 127 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLSQDYPRYEVIV-VDDGSTDETYEIL-EELGAEY---GPNFRVIYPEKKNGGKAG 127 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHhCCCCCceEEE-ECCCCChhHHHHH-HHHHhhc---CcceEEEeccccCccchH
Confidence 599999999999996 999999999999999876554 7777888888854 4443332 134444432245566999
Q ss_pred HHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCC--CchHHHHHHhhhcchhhHHhh
Q 041333 175 ALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNAD--ECLMTRLQEMSLDYHFTVEQE 252 (513)
Q Consensus 175 aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~--~~~~~~~~~~~~~~~~~~~~~ 252 (513)
|+|.|++.+ ++|+|+++|||+.++||+|.+++..| .+++++++++.....+.. .+++++.+..++...+.....
T Consensus 128 al~~~l~~~---~~d~V~~~DaD~~~~~d~l~~~~~~f-~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 203 (439)
T COG1215 128 ALNNGLKRA---KGDVVVILDADTVPEPDALRELVSPF-EDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLR 203 (439)
T ss_pred HHHHHHhhc---CCCEEEEEcCCCCCChhHHHHHHhhh-cCCCeeEEeCCceeeecCChhhhcchhcchhhhhhHHHhhh
Confidence 999999999 99999999999999999999999999 556556666665555544 678888888887776666666
Q ss_pred hcccCCCccccccceeeeeHHHHHHcCCCCCCCccchHHHHHHHhhCCCeEEEecccccccccCcCHHHHHHHHHhhhhc
Q 041333 253 VGSSTHAFFGFNGTAGVWRIAAVNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLGTVKVKNELPSTFKAYRYQQHRWSCG 332 (513)
Q Consensus 253 ~~~~~~~~~~~~G~~~~~rr~~l~~~gg~~~~~~~ED~~l~~rl~~~G~~i~~~~~~~~~~~~p~~~~~~~~Qr~RW~~G 332 (513)
.....+....++|++.++||++++++|||++++++||.+++.+++.+|||+.|++++.++++.|+|++++++||.||++|
T Consensus 204 ~~~~~g~~~~~~G~~~~~rr~aL~~~g~~~~~~i~ED~~lt~~l~~~G~~~~~~~~~~~~~~~p~t~~~~~~Qr~RW~~g 283 (439)
T COG1215 204 AASKGGLISFLSGSSSAFRRSALEEVGGWLEDTITEDADLTLRLHLRGYRVVYVPEAIVWTEAPETLKELWRQRLRWARG 283 (439)
T ss_pred hhhhcCCeEEEcceeeeEEHHHHHHhCCCCCCceeccHHHHHHHHHCCCeEEEeecceEeeeCcccHHHHHHHHHHHHcc
Confidence 66666666778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHhh
Q 041333 333 PANLFRKM 340 (513)
Q Consensus 333 ~~~~~~~~ 340 (513)
.+|.+..+
T Consensus 284 ~~~~~~~~ 291 (439)
T COG1215 284 GLQVLLLH 291 (439)
T ss_pred cceeeehh
Confidence 99988653
No 10
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=100.00 E-value=3.6e-35 Score=303.51 Aligned_cols=241 Identities=15% Similarity=0.178 Sum_probs=178.0
Q ss_pred CCCCCcEEEEEeccCChHHHHHHHHHHH-cCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcC-CCCC
Q 041333 93 NSSYPMVLVQIPMFNEREVYQLSIGAAC-GLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRD-NRKG 170 (513)
Q Consensus 93 ~~~~P~VsIiIP~yne~~~l~~~l~sl~-~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~-~~~g 170 (513)
..+.|+++|+||+|||+++|.++|+|++ +++||+.++.| ++|+|+|+|.+.+ ++..+++ ++++.+..+ +.+.
T Consensus 62 ~~~~p~vaIlIPA~NE~~vI~~~l~s~L~~ldY~~~eIiV-v~d~ndd~T~~~v-~~l~~~~----p~v~~vv~~~~gp~ 135 (504)
T PRK14716 62 SVPEKRIAIFVPAWREADVIGRMLEHNLATLDYENYRIFV-GTYPNDPATLREV-DRLAARY----PRVHLVIVPHDGPT 135 (504)
T ss_pred cCCCCceEEEEeccCchhHHHHHHHHHHHcCCCCCeEEEE-EECCCChhHHHHH-HHHHHHC----CCeEEEEeCCCCCC
Confidence 3458999999999999999999999964 78998766544 6667888887744 4444443 445443322 2223
Q ss_pred CChhHHHHHHHhccc------CCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCc-hHHHHHHhhh
Q 041333 171 YKAGALREGMKRGYV------KSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADEC-LMTRLQEMSL 243 (513)
Q Consensus 171 ~Ka~aln~gl~~a~~------~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~-~~~~~~~~~~ 243 (513)
+|++|+|.|++.+.. .++|+++++|||++++||+|+.+...+ ++.++||.+....+.+.+ +.+.....++
T Consensus 136 ~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~~---~~~~~VQ~pv~~~~~~~~~~~ag~y~~ef 212 (504)
T PRK14716 136 SKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDVIHPLELRLYNYLL---PRHDFVQLPVFSLPRDWGEWVAGTYMDEF 212 (504)
T ss_pred CHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCCcCccHHHHHHhhc---CCCCEEecceeccCCchhHHHHHHHHHHH
Confidence 599999999976411 134999999999999999999876654 455788887665544333 3332222222
Q ss_pred cchhhHHhhhcccCCCccccccceeeeeHHHHHHc-----CC-CCCCCccchHHHHHHHhhCCCeEEEecccccc-----
Q 041333 244 DYHFTVEQEVGSSTHAFFGFNGTAGVWRIAAVNEA-----GG-WKDRTTVEDMDLAVRASLKGWKFLYLGTVKVK----- 312 (513)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~-----gg-~~~~~~~ED~~l~~rl~~~G~~i~~~~~~~~~----- 312 (513)
...+......+...+...+.+|+++++||++++++ |+ |++++++||+|++.|+.++|+|+.|+|+++++
T Consensus 213 ~~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe~l~~~~GG~~fd~~sLTED~dLglRL~~~G~rv~y~p~ai~~~~~~~ 292 (504)
T PRK14716 213 AESHLKDLPVREALGGLIPSAGVGTAFSRRALERLAAERGGQPFDSDSLTEDYDIGLRLKRAGFRQIFVRVRADDTTDRP 292 (504)
T ss_pred HHHHHHHHHHHHhcCCccccCCeeEEeEHHHHHHHHhhcCCCCCCCCCcchHHHHHHHHHHCCCEEEEeccccccccccc
Confidence 22233333345566666667899999999999997 33 99999999999999999999999999998543
Q ss_pred ----------cccCcCHHHHHHHHHhhhhch-hHHHHhhcc
Q 041333 313 ----------NELPSTFKAYRYQQHRWSCGP-ANLFRKMVM 342 (513)
Q Consensus 313 ----------~~~p~~~~~~~~Qr~RW~~G~-~~~~~~~~~ 342 (513)
++.|+|++++++||.||.+|. +|.+++..+
T Consensus 293 ~~~~~~v~t~e~~P~t~~a~~rQR~RW~~Gi~~Q~~~~~gw 333 (504)
T PRK14716 293 DRRGEPIATREFFPDTFKAAVRQKARWIYGIAFQGWERLGW 333 (504)
T ss_pred ccccccccccccCccCHHHHHHHHHHHHhchHHhhHHhcCC
Confidence 678999999999999999995 688866533
No 11
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=100.00 E-value=2.2e-36 Score=289.56 Aligned_cols=230 Identities=21% Similarity=0.270 Sum_probs=187.6
Q ss_pred EEEEEeccCChH-HHHHHHHHHHc----CCC-CCCeeEEEEEeCCCchhHHHHH----HHHHHHhhccCccEEEEEcCCC
Q 041333 99 VLVQIPMFNERE-VYQLSIGAACG----LSW-PSDRLIIQVLDDSTDLTIKDMV----ELECQRWASKGINIKYEVRDNR 168 (513)
Q Consensus 99 VsIiIP~yne~~-~l~~~l~sl~~----q~y-p~~~i~IiV~Dds~D~t~~~l~----~~~~~~~~~~~~~v~~~~~~~~ 168 (513)
|||+||+|||+. .+.++|++.++ |+| |+ .+|+|+||++|++..... ++.++++++ +.+++|++++++
T Consensus 1 ~SIliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~--~eI~vldD~~d~~~~~~~~~~~~~l~~~~~~-~~~v~~~~r~~~ 77 (254)
T cd04191 1 TAIVMPVYNEDPARVFAGLRAMYESLAKTGLADH--FDFFILSDTRDPDIWLAEEAAWLDLCEELGA-QGRIYYRRRREN 77 (254)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCc--eEEEEECCCCChHHHHHHHHHHHHHHHHhCC-CCcEEEEEcCCC
Confidence 699999999995 58999998875 777 54 445688998887655322 225556644 789999999999
Q ss_pred CCCChhHHHHHHHh--cccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcch
Q 041333 169 KGYKAGALREGMKR--GYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYH 246 (513)
Q Consensus 169 ~g~Ka~aln~gl~~--a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~ 246 (513)
.|.|++++|.++.. + ++|+|+++|||+.++||+|.+++++|.+||++++||+++...|.+ ++++++++++....
T Consensus 78 ~g~Kag~l~~~~~~~~~---~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~vq~~~~~~n~~-~~~~~~~~~~~~~~ 153 (254)
T cd04191 78 TGRKAGNIADFCRRWGS---RYDYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQTAPKLIGAE-TLFARLQQFANRLY 153 (254)
T ss_pred CCccHHHHHHHHHHhCC---CCCEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEeCCceeECCC-CHHHHHHHHHHHHH
Confidence 99999999999986 6 899999999999999999999999997799999999999998874 78899887764333
Q ss_pred hhHHhhhcccC-CCccccccceeeeeHHHHHHc---------CCCCCCCccchHHHHHHHhhCCCeEEEecccc-ccccc
Q 041333 247 FTVEQEVGSST-HAFFGFNGTAGVWRIAAVNEA---------GGWKDRTTVEDMDLAVRASLKGWKFLYLGTVK-VKNEL 315 (513)
Q Consensus 247 ~~~~~~~~~~~-~~~~~~~G~~~~~rr~~l~~~---------gg~~~~~~~ED~~l~~rl~~~G~~i~~~~~~~-~~~~~ 315 (513)
....+.+.... .....++|+++++||++++++ |+|++++++||++++++++++||+++|.|++. ++++.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~ri~~~~~~~~~~~~~ 233 (254)
T cd04191 154 GPVFGRGLAAWQGGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWEVRLAPDLEGSYEEC 233 (254)
T ss_pred HHHHHHHHHHhcCCccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCEEEEccCCcceEeEC
Confidence 22222222211 222346799999999999884 45666789999999999999999999999987 48889
Q ss_pred CcCHHHHHHHHHhhhhchhH
Q 041333 316 PSTFKAYRYQQHRWSCGPAN 335 (513)
Q Consensus 316 p~~~~~~~~Qr~RW~~G~~~ 335 (513)
|++++++++||.||++|.+|
T Consensus 234 p~~~~~~~~qr~RW~~G~~q 253 (254)
T cd04191 234 PPTLIDFLKRDRRWCQGNLQ 253 (254)
T ss_pred CCCHHHHHHHHHHHHhhcCc
Confidence 99999999999999999876
No 12
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=100.00 E-value=4.3e-36 Score=287.04 Aligned_cols=234 Identities=24% Similarity=0.493 Sum_probs=185.8
Q ss_pred EEEEeccCCh-HHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHH
Q 041333 100 LVQIPMFNER-EVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALRE 178 (513)
Q Consensus 100 sIiIP~yne~-~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~ 178 (513)
||+||+|||+ +.++++++|+.+|+||+.+++| |+|+|+|+|....+++.++++ +.+++++..+++.|+|++|+|.
T Consensus 1 siiip~~ne~~~~l~~~l~sl~~q~~~~~eiiV-vdd~s~D~t~~~~i~~~~~~~---~~~i~~i~~~~~~G~~~~a~n~ 76 (236)
T cd06435 1 SIHVPCYEEPPEMVKETLDSLAALDYPNFEVIV-IDNNTKDEALWKPVEAHCAQL---GERFRFFHVEPLPGAKAGALNY 76 (236)
T ss_pred CeeEeeCCCcHHHHHHHHHHHHhCCCCCcEEEE-EeCCCCchhHHHHHHHHHHHh---CCcEEEEEcCCCCCCchHHHHH
Confidence 6999999998 7999999999999999877644 777799998744445444432 3467777777677878999999
Q ss_pred HHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHhhhcccCC
Q 041333 179 GMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQEVGSSTH 258 (513)
Q Consensus 179 gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (513)
|++.+. .++|+|+++|+|+.++|++|.+++..+ +++++++|+++....+...+++.+.....+...+..........
T Consensus 77 g~~~a~-~~~d~i~~lD~D~~~~~~~l~~l~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 153 (236)
T cd06435 77 ALERTA-PDAEIIAVIDADYQVEPDWLKRLVPIF-DDPRVGFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVSRNER- 153 (236)
T ss_pred HHHhcC-CCCCEEEEEcCCCCcCHHHHHHHHHHh-cCCCeeEEecCccccCCCccHHHHHHhHHHHHHHHHHhcccccc-
Confidence 999972 137999999999999999999999999 58999999987655554444444433222222222221111111
Q ss_pred CccccccceeeeeHHHHHHcCCCCCCCccchHHHHHHHhhCCCeEEEecccccccccCcCHHHHHHHHHhhhhchhHHHH
Q 041333 259 AFFGFNGTAGVWRIAAVNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLGTVKVKNELPSTFKAYRYQQHRWSCGPANLFR 338 (513)
Q Consensus 259 ~~~~~~G~~~~~rr~~l~~~gg~~~~~~~ED~~l~~rl~~~G~~i~~~~~~~~~~~~p~~~~~~~~Qr~RW~~G~~~~~~ 338 (513)
.....+|+++++||++++++|||++....||.+++.|+.++||++.+.|++.+++..|+++.++++||.||..|.+|.++
T Consensus 154 ~~~~~~g~~~~~rr~~~~~iGgf~~~~~~eD~dl~~r~~~~G~~~~~~~~~~~~~~~~~~~~~~~~q~~rw~~g~~~~~~ 233 (236)
T cd06435 154 NAIIQHGTMCLIRRSALDDVGGWDEWCITEDSELGLRMHEAGYIGVYVAQSYGHGLIPDTFEAFKKQRFRWAYGAVQILK 233 (236)
T ss_pred CceEEecceEEEEHHHHHHhCCCCCccccchHHHHHHHHHCCcEEEEcchhhccCcCcccHHHHHHHHHHHhcchhhhhh
Confidence 12335799999999999999999998899999999999999999999999999999999999999999999999999998
Q ss_pred hh
Q 041333 339 KM 340 (513)
Q Consensus 339 ~~ 340 (513)
+|
T Consensus 234 ~~ 235 (236)
T cd06435 234 KH 235 (236)
T ss_pred cc
Confidence 76
No 13
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=100.00 E-value=3.2e-35 Score=299.31 Aligned_cols=231 Identities=19% Similarity=0.265 Sum_probs=179.4
Q ss_pred CCCCcEEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCC--C
Q 041333 94 SSYPMVLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKG--Y 171 (513)
Q Consensus 94 ~~~P~VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g--~ 171 (513)
+..|+|||+||+|||++.+++||+|+++|+||+.|++| ++|+|+|+|.+ ++++..++++ +.+++++..+++.| +
T Consensus 38 ~~~p~VSViiP~~nee~~l~~~L~Sl~~q~Yp~~EIiv-vdd~s~D~t~~-iv~~~~~~~p--~~~i~~v~~~~~~G~~~ 113 (373)
T TIGR03472 38 RAWPPVSVLKPLHGDEPELYENLASFCRQDYPGFQMLF-GVQDPDDPALA-VVRRLRADFP--DADIDLVIDARRHGPNR 113 (373)
T ss_pred CCCCCeEEEEECCCCChhHHHHHHHHHhcCCCCeEEEE-EeCCCCCcHHH-HHHHHHHhCC--CCceEEEECCCCCCCCh
Confidence 34789999999999999999999999999999866544 56667777766 5555544432 34577776655544 4
Q ss_pred ChhHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHh
Q 041333 172 KAGALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQ 251 (513)
Q Consensus 172 Ka~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ 251 (513)
|.+|++.+++++ ++|+++++|||+.++||+|+++++.+ ++|++++|++.....+ ..++.++......+..+....
T Consensus 114 K~~~l~~~~~~a---~ge~i~~~DaD~~~~p~~L~~lv~~~-~~~~v~~V~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~ 188 (373)
T TIGR03472 114 KVSNLINMLPHA---RHDILVIADSDISVGPDYLRQVVAPL-ADPDVGLVTCLYRGRP-VPGFWSRLGAMGINHNFLPSV 188 (373)
T ss_pred HHHHHHHHHHhc---cCCEEEEECCCCCcChhHHHHHHHHh-cCCCcceEeccccCCC-CCCHHHHHHHHHhhhhhhHHH
Confidence 888999999999 99999999999999999999999999 6899999998754333 345666655443333221111
Q ss_pred hhcccCCCccccccceeeeeHHHHHHcCCCCC--CCccchHHHHHHHhhCCCeEEEecccccccccCcCHHHHHHHHHhh
Q 041333 252 EVGSSTHAFFGFNGTAGVWRIAAVNEAGGWKD--RTTVEDMDLAVRASLKGWKFLYLGTVKVKNELPSTFKAYRYQQHRW 329 (513)
Q Consensus 252 ~~~~~~~~~~~~~G~~~~~rr~~l~~~gg~~~--~~~~ED~~l~~rl~~~G~~i~~~~~~~~~~~~p~~~~~~~~Qr~RW 329 (513)
......+......|+++++||++++++|||++ +.++||++++.++.++|+++.+.|++..++..+++++++++||.||
T Consensus 189 ~~~~~~~~~~~~~G~~~a~RR~~l~~iGGf~~~~~~~~ED~~l~~~i~~~G~~v~~~~~~v~~~~~~~s~~~~~~q~~RW 268 (373)
T TIGR03472 189 MVARALGRARFCFGATMALRRATLEAIGGLAALAHHLADDYWLGELVRALGLRVVLAPVVVDTDVHETSFATLLAHELRW 268 (373)
T ss_pred HHHHhccCCccccChhhheeHHHHHHcCChHHhcccchHHHHHHHHHHHcCCeEEecchhhhcCCCccCHHHHHHHHHHH
Confidence 11111222223569999999999999999986 4578999999999999999999999888888889999999999999
Q ss_pred hhch
Q 041333 330 SCGP 333 (513)
Q Consensus 330 ~~G~ 333 (513)
.+..
T Consensus 269 ~r~~ 272 (373)
T TIGR03472 269 SRTI 272 (373)
T ss_pred Hhhh
Confidence 8664
No 14
>PLN02893 Cellulose synthase-like protein
Probab=100.00 E-value=3.7e-34 Score=299.76 Aligned_cols=303 Identities=21% Similarity=0.279 Sum_probs=225.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCccccc--cCCCCCCcEEEEEec---cCCh-HHHHHHHHHHHcCCC
Q 041333 51 MSLMLLIERVYMSIVILLLKLSGRSPETRYKFQPMKEDVE--LGNSSYPMVLVQIPM---FNER-EVYQLSIGAACGLSW 124 (513)
Q Consensus 51 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~P~VsIiIP~---yne~-~~l~~~l~sl~~q~y 124 (513)
+|++++++.+++...++.-...++.|.++... ++... ...+++|.|+|.|++ ++|+ -.+.+|+-|+++.||
T Consensus 56 ~w~~~~~~e~wf~f~W~l~q~~k~~Pv~r~~~---~~~L~~~~~~~~lP~vDvfv~TaDP~~Epp~~~~ntvLSilA~dy 132 (734)
T PLN02893 56 ITLLLLLADIVLAFMWATTQAFRMCPVHRRVF---IEHLEHYAKESDYPGLDVFICTADPYKEPPMGVVNTALSVMAYDY 132 (734)
T ss_pred HHHHHHHHHHHHHHHHHHccCccccccccccC---HHHHhhhcccccCCcceeeeccCCcccCchHHHHHHHHHHHhhcc
Confidence 46777788887777777766666777654321 11111 124579999999999 7787 577899999999999
Q ss_pred CCCeeEEEEEeC-CCchhHHHHHHH------------------------------------------------HH-----
Q 041333 125 PSDRLIIQVLDD-STDLTIKDMVEL------------------------------------------------EC----- 150 (513)
Q Consensus 125 p~~~i~IiV~Dd-s~D~t~~~l~~~------------------------------------------------~~----- 150 (513)
|.+++-++|.|| ++.-|.+.+.|. ..
T Consensus 133 p~~kls~YvSDDGgs~lt~~al~Eaa~FA~~WvPFCrk~~ie~R~P~~YF~~~~~~~~~e~~~~k~~Yee~k~ri~~~~~ 212 (734)
T PLN02893 133 PTEKLSVYVSDDGGSKLTLFAFMEAAKFATHWLPFCKKNKIVERCPEAYFSSNSHSWSPETEQIKMMYESMKVRVENVVE 212 (734)
T ss_pred CccceEEEEecCCccHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCccchHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999998 555555555551 00
Q ss_pred -----HHhh-------------c--------------------------cCccEEEEEcCCCC----CCChhHHHHHHHh
Q 041333 151 -----QRWA-------------S--------------------------KGINIKYEVRDNRK----GYKAGALREGMKR 182 (513)
Q Consensus 151 -----~~~~-------------~--------------------------~~~~v~~~~~~~~~----g~Ka~aln~gl~~ 182 (513)
+++. . .-+++.|++|++++ ++||||+|.+++.
T Consensus 213 ~~~~~~~~~~~~~~~~~f~~w~~~~~~~dH~~ivqV~l~~~~~~d~~g~~lP~lvYvsReKrp~~~Hh~KAGaLN~llrv 292 (734)
T PLN02893 213 RGKVSTDYITCDQEREAFSRWTDKFTRQDHPTVIQVLLESGKDKDITGHTMPNLIYVSREKSKNSPHHFKAGALNTLLRV 292 (734)
T ss_pred cCcCchhhhhhcccccccccCcCCCCCCCCCceeeeeccCCCccchhhccCCceEEEeCCCCCCCCcccccchHHHHHHh
Confidence 0100 0 01227788888874 5899999999997
Q ss_pred ccc-CCCcEEEEEcCCCCC-ChHHHHHHHHHHhcCC----CeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHhhhccc
Q 041333 183 GYV-KSCDFVVIFDADFQP-ESDFLTRTIPFLVHNP----QLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQEVGSS 256 (513)
Q Consensus 183 a~~-~~~d~I~~lDaD~~~-~pd~L~~l~~~~~~~~----~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (513)
+.. .++|+|+++|||..+ +|+++++.+.+| .|| +++.||.|+.+.|.+++-. ..-+....+...+.+.+.
T Consensus 293 S~~~TngpfIl~lDcD~y~n~p~~l~~amcff-~Dp~~~~~vafVQfPQ~F~~i~~~D~---y~~~~~vff~~~~~glDG 368 (734)
T PLN02893 293 SATMTNAPIILTLDCDMYSNDPQTPLRALCYL-LDPSMDPKLGYVQFPQIFHGINKNDI---YAGELKRLFQINMIGMDG 368 (734)
T ss_pred hcccCCCCEEEEecCCcCCCchhHHHHHHHHh-cCCCcCCceEEEeCcccccCCCcCCC---CcchhHHHHHHHhhcccc
Confidence 432 499999999999996 799999999999 465 7999999999988765411 011222344555566666
Q ss_pred CCCccccccceeeeeHHHHHH------------------------------------------------cCCCCCCCccc
Q 041333 257 THAFFGFNGTAGVWRIAAVNE------------------------------------------------AGGWKDRTTVE 288 (513)
Q Consensus 257 ~~~~~~~~G~~~~~rr~~l~~------------------------------------------------~gg~~~~~~~E 288 (513)
.++.. ++|+++++||+++.. .+||..++++|
T Consensus 369 ~~gp~-y~GTGc~~RR~al~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~v~sC~ye~~t~WG~~~G~~ygsvtE 447 (734)
T PLN02893 369 LAGPN-YVGTGCFFRRRVFYGGPSSLILPEIPELNPDHLVDKSIKSQEVLALAHHVAGCNYENQTNWGSKMGFRYGSLVE 447 (734)
T ss_pred cCCce-eeccceEEEHHHhcCCCccccchhhhhcccccccccccchHHHHHHhhhccccccccCCccccccceEeccccc
Confidence 66654 789999999999931 13677788999
Q ss_pred hHHHHHHHhhCCCeEEEecc--cccccccCcCHHHHHHHHHhhhhchhHHHHhhccccc-cccccCcchhhHHHHH
Q 041333 289 DMDLAVRASLKGWKFLYLGT--VKVKNELPSTFKAYRYQQHRWSCGPANLFRKMVMEIV-RNKKVSLWKKVHVIYS 361 (513)
Q Consensus 289 D~~l~~rl~~~G~~i~~~~~--~~~~~~~p~~~~~~~~Qr~RW~~G~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 361 (513)
|.+++++++.+|||.+|++. ....+..|+++.+++.||.||+.|.+|++......++ ..+++++.|++.++..
T Consensus 448 D~~Tg~~lh~~GWrSvY~~p~~~af~G~aP~~l~~~l~Q~~RWa~G~lqI~~s~~nPl~~g~~~L~~~Qrl~Y~~~ 523 (734)
T PLN02893 448 DYYTGYRLQCEGWKSIFCNPKRPAFLGDSPINLHDVLNQQKRWSVGLLEVAFSKYSPITFGVKSIGLLMGLGYAHY 523 (734)
T ss_pred cHHHHHHHHhcCCcEEecCCCchhhccCCCCCHHHHHHHHHHHHhhhHHHHhhccCchhhcccCCCHHHHHHHHHH
Confidence 99999999999999999863 3458999999999999999999999999754323333 3478999999988764
No 15
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=100.00 E-value=2.4e-34 Score=274.38 Aligned_cols=230 Identities=28% Similarity=0.439 Sum_probs=179.1
Q ss_pred CcEEEEEeccCCh-HHHHHHHHHHHcCCCCCCeeEEE-EEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChh
Q 041333 97 PMVLVQIPMFNER-EVYQLSIGAACGLSWPSDRLIIQ-VLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAG 174 (513)
Q Consensus 97 P~VsIiIP~yne~-~~l~~~l~sl~~q~yp~~~i~Ii-V~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~ 174 (513)
|+|||+||+|||+ +.+++||+|+++|+||+++++|+ |+|+|+|++.+ +++.... + .+++++..+.+.|+|++
T Consensus 1 p~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~-~~~~~~~----~-~~~~~~~~~~~~~~~~~ 74 (234)
T cd06421 1 PTVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRA-LAAELGV----E-YGYRYLTRPDNRHAKAG 74 (234)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHH-HHHHhhc----c-cCceEEEeCCCCCCcHH
Confidence 6799999999986 78999999999999998533444 44556776655 4443322 1 25677777777888999
Q ss_pred HHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCc-hHHHHHHhhhcchhhHHhhh
Q 041333 175 ALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADEC-LMTRLQEMSLDYHFTVEQEV 253 (513)
Q Consensus 175 aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~-~~~~~~~~~~~~~~~~~~~~ 253 (513)
++|.|++.+ ++|||+++|+|+.++|+++++++..+.+++++++|++.....+.+.. +..+................
T Consensus 75 ~~n~~~~~a---~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (234)
T cd06421 75 NLNNALAHT---TGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPG 151 (234)
T ss_pred HHHHHHHhC---CCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999 99999999999999999999999999766999999998776665432 12221111111111111111
Q ss_pred cccCCCccccccceeeeeHHHHHHcCCCCCCCccchHHHHHHHhhCCCeEEEecccccccccCcCHHHHHHHHHhhhhch
Q 041333 254 GSSTHAFFGFNGTAGVWRIAAVNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLGTVKVKNELPSTFKAYRYQQHRWSCGP 333 (513)
Q Consensus 254 ~~~~~~~~~~~G~~~~~rr~~l~~~gg~~~~~~~ED~~l~~rl~~~G~~i~~~~~~~~~~~~p~~~~~~~~Qr~RW~~G~ 333 (513)
... .....++|+++++||++++++|||++....||++++.|++++|+++.+.|++.++++.|.+++.+.+|+.||.+|.
T Consensus 152 ~~~-~~~~~~~g~~~~~r~~~~~~ig~~~~~~~~eD~~l~~r~~~~g~~i~~~~~~~~~~~~~~~~~~~~~q~~rw~~~~ 230 (234)
T cd06421 152 RDR-WGAAFCCGSGAVVRREALDEIGGFPTDSVTEDLATSLRLHAKGWRSVYVPEPLAAGLAPETLAAYIKQRLRWARGM 230 (234)
T ss_pred Hhh-cCCceecCceeeEeHHHHHHhCCCCccceeccHHHHHHHHHcCceEEEecCccccccCCccHHHHHHHHHHHhcCC
Confidence 111 2233367999999999999999999888999999999999999999999999999999999999999999999998
Q ss_pred hHH
Q 041333 334 ANL 336 (513)
Q Consensus 334 ~~~ 336 (513)
++.
T Consensus 231 ~~~ 233 (234)
T cd06421 231 LQI 233 (234)
T ss_pred eee
Confidence 763
No 16
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=100.00 E-value=1.6e-32 Score=294.93 Aligned_cols=239 Identities=18% Similarity=0.194 Sum_probs=180.3
Q ss_pred CCCCCcEEEEEeccCChHHHHHHHHHHH-cCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEE--EEcCCCC
Q 041333 93 NSSYPMVLVQIPMFNEREVYQLSIGAAC-GLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKY--EVRDNRK 169 (513)
Q Consensus 93 ~~~~P~VsIiIP~yne~~~l~~~l~sl~-~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~--~~~~~~~ 169 (513)
.++.|+|||+||+|||+.++.+++++++ +||||+.++.+ ++|+++|.|.+ .+++.++++ ++++. ..++.++
T Consensus 59 ~~~~~~vsIlVPa~nE~~vi~~~i~~ll~~ldYP~~eI~v-i~~~nD~~T~~-~~~~l~~~~----p~~~~v~~~~~g~~ 132 (727)
T PRK11234 59 KPDEKPLAIMVPAWNETGVIGNMAELAATTLDYENYHIFV-GTYPNDPATQA-DVDAVCARF----PNVHKVVCARPGPT 132 (727)
T ss_pred cCCCCCEEEEEecCcchhhHHHHHHHHHHhCCCCCeEEEE-EecCCChhHHH-HHHHHHHHC----CCcEEEEeCCCCCC
Confidence 4567899999999999999999999987 79999865444 44444444555 556666655 33443 3333344
Q ss_pred CCChhHHHHHHHhccc------CCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCC-CchHHHHHHhh
Q 041333 170 GYKAGALREGMKRGYV------KSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNAD-ECLMTRLQEMS 242 (513)
Q Consensus 170 g~Ka~aln~gl~~a~~------~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~-~~~~~~~~~~~ 242 (513)
+|++|+|.+++.+.. .++|.++++|||+.++||+|+ .++++ .++. ++||++....+.+ .++.++.+..+
T Consensus 133 -gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~v~pd~L~-~~~~l-~~~~-~~VQ~p~~p~~~~~~~~~~~~~~~E 208 (727)
T PRK11234 133 -SKADCLNNVLDAITQFERSANFAFAGFILHDAEDVISPMELR-LFNYL-VERK-DLIQIPVYPFEREWTHFTSGTYIDE 208 (727)
T ss_pred -CHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCCCChhHHH-HHHhh-cCCC-CeEeecccCCCccHHHHHHHHHHHH
Confidence 599999999998622 245778999999999999998 56777 4555 8999986643432 23455555556
Q ss_pred hcchhhHHhhhcccCCCccccccceeee-eH--HHHHHcC---CCCCCCccchHHHHHHHhhCCCeEEEecc--------
Q 041333 243 LDYHFTVEQEVGSSTHAFFGFNGTAGVW-RI--AAVNEAG---GWKDRTTVEDMDLAVRASLKGWKFLYLGT-------- 308 (513)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~-rr--~~l~~~g---g~~~~~~~ED~~l~~rl~~~G~~i~~~~~-------- 308 (513)
+...+...+.+....++..+..|++++| || +++.+.| +|+.++++||+|++.|++++||++.|+|.
T Consensus 209 Fa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr~l~al~~~ggg~~~~~~~lTED~dlg~rL~~~G~~v~f~~~~v~~~~~~ 288 (727)
T PRK11234 209 FAELHGKDVPVREALAGQVPSAGVGTCFSRRAVTALLEDGDGIAFDVQSLTEDYDIGFRLKEKGMREIFVRFPVVDEAKE 288 (727)
T ss_pred HHHHhhhhhHHHHHcCCCcccCCceEEEecccHHHHHHhcCCCCcCCCcchHHHHHHHHHHHCCCEEEEccccccccccc
Confidence 5555555555556665566788999999 77 5688888 69999999999999999999999999992
Q ss_pred ---------------cccccccCcCHHHHHHHHHhhhhc-hhHHHHhhc
Q 041333 309 ---------------VKVKNELPSTFKAYRYQQHRWSCG-PANLFRKMV 341 (513)
Q Consensus 309 ---------------~~~~~~~p~~~~~~~~Qr~RW~~G-~~~~~~~~~ 341 (513)
..++++.|+|+++.++||.||.+| .+|.++...
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~P~t~~~~~rQR~RW~~G~~~q~~~~~~ 337 (727)
T PRK11234 289 REQRKFLQHARTSNMICVREYFPDTFSAAVRQKSRWIIGIVFQGFKTLG 337 (727)
T ss_pred ccccccccccccccceEEEEeCchhHHHHHHHHHHHHcccHHHHHHHhC
Confidence 336778899999999999999999 588887654
No 17
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=100.00 E-value=1.9e-35 Score=281.08 Aligned_cols=226 Identities=27% Similarity=0.421 Sum_probs=152.5
Q ss_pred CcEEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCC--CChh
Q 041333 97 PMVLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKG--YKAG 174 (513)
Q Consensus 97 P~VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g--~Ka~ 174 (513)
|+|+|+||+|||++.+.++|+|+++|+||+.+++| |+|+++|++.+ .+++.+++++ +.+++++.++++.| +|++
T Consensus 1 P~v~Vvip~~~~~~~l~~~l~sl~~~~~~~~~v~v-vd~~~~~~~~~-~~~~~~~~~~--~~~v~vi~~~~~~g~~~k~~ 76 (228)
T PF13641_consen 1 PRVSVVIPAYNEDDVLRRCLESLLAQDYPRLEVVV-VDDGSDDETAE-ILRALAARYP--RVRVRVIRRPRNPGPGGKAR 76 (228)
T ss_dssp --EEEE--BSS-HHHHHHHHHHHTTSHHHTEEEEE-EEE-SSS-GCT-THHHHHHTTG--G-GEEEEE----HHHHHHHH
T ss_pred CEEEEEEEecCCHHHHHHHHHHHHcCCCCCeEEEE-EECCCChHHHH-HHHHHHHHcC--CCceEEeecCCCCCcchHHH
Confidence 77999999999999999999999999997644433 55556666655 4444455543 34577887766554 5999
Q ss_pred HHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHhhhc
Q 041333 175 ALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQEVG 254 (513)
Q Consensus 175 aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (513)
|+|.|++.+ ++|+|+++|+|++++|++|+++++.+ ++|++++|++.....+ +.++.+..+.......+.......
T Consensus 77 a~n~~~~~~---~~d~i~~lD~D~~~~p~~l~~~~~~~-~~~~~~~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 151 (228)
T PF13641_consen 77 ALNEALAAA---RGDYILFLDDDTVLDPDWLERLLAAF-ADPGVGAVGGPVFPDN-DRNWLTRLQDLFFARWHLRFRSGR 151 (228)
T ss_dssp HHHHHHHH------SEEEEE-SSEEE-CHHHHHHHHHH-HBSS--EEEEEEEETT-CCCEEEE-TT--S-EETTTS-TT-
T ss_pred HHHHHHHhc---CCCEEEEECCCcEECHHHHHHHHHHH-HhCCCCeEeeeEeecC-CCCHHHHHHHHHHhhhhhhhhhhh
Confidence 999999999 99999999999999999999999999 8999999999986655 455555544433322222222222
Q ss_pred ccCCCccccccceeeeeHHHHHHcCCCCCCCccchHHHHHHHhhCCCeEEEecccccccccCcCHHHHHHHHHhhhhc
Q 041333 255 SSTHAFFGFNGTAGVWRIAAVNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLGTVKVKNELPSTFKAYRYQQHRWSCG 332 (513)
Q Consensus 255 ~~~~~~~~~~G~~~~~rr~~l~~~gg~~~~~~~ED~~l~~rl~~~G~~i~~~~~~~~~~~~p~~~~~~~~Qr~RW~~G 332 (513)
... ...+++|+++++||++++++|||++...+||.+++.|+.++||++.|+|++.++++.|.+++++.+||.||.+|
T Consensus 152 ~~~-~~~~~~G~~~~~rr~~~~~~g~fd~~~~~eD~~l~~r~~~~G~~~~~~~~~~v~~~~~~~~~~~~~q~~RW~~g 228 (228)
T PF13641_consen 152 RAL-GVAFLSGSGMLFRRSALEEVGGFDPFILGEDFDLCLRLRAAGWRIVYAPDALVYHEEPSSLKAFFKQRFRWSRG 228 (228)
T ss_dssp B-----S-B--TEEEEEHHHHHHH-S--SSSSSHHHHHHHHHHHTT--EEEEEEEEEEE--SSSTHHHHHHHHHHH--
T ss_pred ccc-ceeeccCcEEEEEHHHHHHhCCCCCCCcccHHHHHHHHHHCCCcEEEECCcEEEEeCCCCHHHHHHHHhccCcC
Confidence 333 23446799999999999999999997788999999999999999999999999999999999999999999987
No 18
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=100.00 E-value=4.8e-34 Score=265.00 Aligned_cols=191 Identities=19% Similarity=0.295 Sum_probs=163.6
Q ss_pred CcEEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCC--CChh
Q 041333 97 PMVLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKG--YKAG 174 (513)
Q Consensus 97 P~VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g--~Ka~ 174 (513)
|+|||+||+|||++.+.++|+|+.+|+||+.+++| |+|+|+|+|.+ .+++..+++ ...+++++..+++.| +|++
T Consensus 1 p~vsviip~~n~~~~l~~~L~sl~~q~~~~~eiiv-Vdd~s~d~t~~-~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~ 76 (196)
T cd02520 1 PGVSILKPLCGVDPNLYENLESFFQQDYPKYEILF-CVQDEDDPAIP-VVRKLIAKY--PNVDARLLIGGEKVGINPKVN 76 (196)
T ss_pred CCeEEEEecCCCCccHHHHHHHHHhccCCCeEEEE-EeCCCcchHHH-HHHHHHHHC--CCCcEEEEecCCcCCCCHhHH
Confidence 67999999999999999999999999999866544 77789998877 444444433 123566666555544 4778
Q ss_pred HHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHhhhc
Q 041333 175 ALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQEVG 254 (513)
Q Consensus 175 aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (513)
++|.|++.+ ++|+++++|+|+.++|++|++++..+ .+|++++|++.
T Consensus 77 ~~n~g~~~a---~~d~i~~~D~D~~~~~~~l~~l~~~~-~~~~~~~v~~~------------------------------ 122 (196)
T cd02520 77 NLIKGYEEA---RYDILVISDSDISVPPDYLRRMVAPL-MDPGVGLVTCL------------------------------ 122 (196)
T ss_pred HHHHHHHhC---CCCEEEEECCCceEChhHHHHHHHHh-hCCCCCeEEee------------------------------
Confidence 999999999 99999999999999999999999998 68899999876
Q ss_pred ccCCCccccccceeeeeHHHHHHcCCCCCC--CccchHHHHHHHhhCCCeEEEecccccccccCcCHHHHHHHHHhhhhc
Q 041333 255 SSTHAFFGFNGTAGVWRIAAVNEAGGWKDR--TTVEDMDLAVRASLKGWKFLYLGTVKVKNELPSTFKAYRYQQHRWSCG 332 (513)
Q Consensus 255 ~~~~~~~~~~G~~~~~rr~~l~~~gg~~~~--~~~ED~~l~~rl~~~G~~i~~~~~~~~~~~~p~~~~~~~~Qr~RW~~G 332 (513)
+..|+++++||++++++|||++. ..+||++++.|+.++|+++.+.|++.++++.|.+++++++||.||.+.
T Consensus 123 -------~~~g~~~~~r~~~~~~~ggf~~~~~~~~eD~~l~~rl~~~G~~i~~~~~~~~~~~~~~~~~~~~~q~~rw~~~ 195 (196)
T cd02520 123 -------CAFGKSMALRREVLDAIGGFEAFADYLAEDYFLGKLIWRLGYRVVLSPYVVMQPLGSTSLASFWRRQLRWSRT 195 (196)
T ss_pred -------cccCceeeeEHHHHHhccChHHHhHHHHHHHHHHHHHHHcCCeEEEcchheeccCCcccHHHHHHHHHHHhcc
Confidence 25589999999999999999763 368999999999999999999999999999999999999999999864
No 19
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=100.00 E-value=1.9e-31 Score=282.65 Aligned_cols=241 Identities=16% Similarity=0.128 Sum_probs=183.1
Q ss_pred CCCCCcEEEEEeccCChHHHHHHHHHHH-cCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCC-CC
Q 041333 93 NSSYPMVLVQIPMFNEREVYQLSIGAAC-GLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNR-KG 170 (513)
Q Consensus 93 ~~~~P~VsIiIP~yne~~~l~~~l~sl~-~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~-~g 170 (513)
+.+.|.+||+||+|||++++.+++++++ +++||+.++.| +++..+++|.+.+ ++...+ .++++.++.+++ +.
T Consensus 67 ~~~~~~vsIlVPa~nE~~VI~~~v~~ll~~ldYp~~~I~v-~~~~nD~~T~~~~-~~~~~~----~p~~~~v~~~~~gp~ 140 (703)
T PRK15489 67 ERDEQPLAIMVPAWKEYDVIAKMIENMLATLDYRRYVIFV-GTYPNDAETITEV-ERMRRR----YKRLVRVEVPHDGPT 140 (703)
T ss_pred ccCCCceEEEEeCCCcHHHHHHHHHHHHhcCCCCCeEEEE-EecCCCccHHHHH-HHHhcc----CCcEEEEEcCCCCCC
Confidence 4567899999999999999999999986 88999875444 3322223555533 322222 245666555443 23
Q ss_pred CChhHHHHHHHhccc----CCC--cEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEE-EecCCCchHHHHHHhhh
Q 041333 171 YKAGALREGMKRGYV----KSC--DFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWE-FVNADECLMTRLQEMSL 243 (513)
Q Consensus 171 ~Ka~aln~gl~~a~~----~~~--d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~-~~n~~~~~~~~~~~~~~ 243 (513)
+|+.|+|.|++.+.. .++ +.|++.|||++++|+.|..+ .++..++ +++|++.. ..|...+|.++.+..++
T Consensus 141 gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~~~P~~L~~~-~~~~~~~--~~iQ~pV~~~~~~~~~~l~~~~~~Ef 217 (703)
T PRK15489 141 CKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDVLHPLELKYF-NYLLPRK--DLVQLPVLSLERKWYEWVAGTYMDEF 217 (703)
T ss_pred CHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCCCChhHHHHH-HhhcCCc--ceeeeeeccCCCccccHHHHHHHHHH
Confidence 599999999987522 133 34999999999999999876 5553444 67888754 44566789999999999
Q ss_pred cchhhHHhhhcccCCCccccccceeeeeHHHHHHc---CC---CCCCCccchHHHHHHHhhCCCeEEEecc---------
Q 041333 244 DYHFTVEQEVGSSTHAFFGFNGTAGVWRIAAVNEA---GG---WKDRTTVEDMDLAVRASLKGWKFLYLGT--------- 308 (513)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~---gg---~~~~~~~ED~~l~~rl~~~G~~i~~~~~--------- 308 (513)
...+..........++..+.+|++++|||++++++ || |+.++++||.|+++|++++|+++.|+--
T Consensus 218 a~~~~~~l~~r~~l~~~ipl~Gv~~~frr~aL~~l~~~gg~~~~n~~sLTED~Dlg~RL~~~G~r~~f~~~~~~~~~~~~ 297 (703)
T PRK15489 218 AEWHQKDLVVRESLTGTVPSAGVGTCFSRRALLALMKERGNQPFNTSSLTEDYDFSFRLAELGMQEIFVRFPVQFRVRRT 297 (703)
T ss_pred HHHhhhHHHHHHHcCCceeccCcceeeeHHHHHHHHHhcCCCCCCCCCchHhHHHHHHHHHCCCceEEEEEecccccccc
Confidence 98888777777777777778999999999999876 54 6677899999999999999999999221
Q ss_pred --------------cccccccCcCHHHHHHHHHhhhhchh-HHHHhhcc
Q 041333 309 --------------VKVKNELPSTFKAYRYQQHRWSCGPA-NLFRKMVM 342 (513)
Q Consensus 309 --------------~~~~~~~p~~~~~~~~Qr~RW~~G~~-~~~~~~~~ 342 (513)
..+.+..|.++++..+||.||..|-. |.+++..+
T Consensus 298 ~~~~~~~~~~~~~~~~tre~fP~~~~a~~rQk~RW~~Gi~~q~~~~~gw 346 (703)
T PRK15489 298 SWFGPRRERTREMLLCVREYFPDTFRTAYRQKARWVLGIAFQGWEQMGW 346 (703)
T ss_pred ccccccccccccCceeehhhCcHHHHHHHHHHHHHHhHHHHhhHHHhCC
Confidence 33467899999999999999999987 88776544
No 20
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=100.00 E-value=8.6e-34 Score=272.31 Aligned_cols=203 Identities=18% Similarity=0.247 Sum_probs=170.7
Q ss_pred EEEeccCCh-HHHHHHHHHHHcCCCC--------CCeeEEEE-EeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCC
Q 041333 101 VQIPMFNER-EVYQLSIGAACGLSWP--------SDRLIIQV-LDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKG 170 (513)
Q Consensus 101 IiIP~yne~-~~l~~~l~sl~~q~yp--------~~~i~IiV-~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g 170 (513)
|+||+|||+ .+|+++|+|+++|+|| .++++|+| +|+|+| .+.|
T Consensus 1 v~ip~yNE~~~~i~~~l~sv~~q~y~~~~~~~~~~~~~evivv~Dgs~d---------------------------~~~g 53 (244)
T cd04190 1 VCVTMYNEDEEELARTLDSILKNDYPFCARGGDSWKKIVVCVIFDGAIK---------------------------KNRG 53 (244)
T ss_pred CEEeeecCCHHHHHHHHHHHHHhhHHHHhcCCCCccEEEEEEEeCCccc---------------------------ccCc
Confidence 689999997 8999999999999999 56666655 566777 1223
Q ss_pred CChh-------HHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhh
Q 041333 171 YKAG-------ALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSL 243 (513)
Q Consensus 171 ~Ka~-------aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~ 243 (513)
|.. ++|.++..+ ++|+|+++|+|+.++||+|++++.+|+.+|++++|++.....|...+++++.|..++
T Consensus 54 -k~~~~~~~~~~~~~~~~~a---~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~~~~~~~~q~~ey 129 (244)
T cd04190 54 -KRDSQLWFFNYFCRVLFPD---DPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKKQGPLVMYQVFEY 129 (244)
T ss_pred -chHHHHHHHHHHHHHhhcC---CCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCcchhHHHhHheeh
Confidence 443 567888888 999999999999999999999999997799999999999888877788888888766
Q ss_pred cchhhHHhhhcccCCCccccccceeeeeHHHHHHcCCCCC--------------------CCccchHHHHHHHhhCCCeE
Q 041333 244 DYHFTVEQEVGSSTHAFFGFNGTAGVWRIAAVNEAGGWKD--------------------RTTVEDMDLAVRASLKGWKF 303 (513)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~gg~~~--------------------~~~~ED~~l~~rl~~~G~~i 303 (513)
...........+..+...+.+|++++||+++++++|++.. ..++||.+++.++.++||++
T Consensus 130 ~~~~~~~~~~~s~~g~~~~~~G~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G~~~ 209 (244)
T cd04190 130 AISHWLDKAFESVFGFVTCLPGCFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAGPKR 209 (244)
T ss_pred hhhhhhcccHHHcCCceEECCCceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccCCcc
Confidence 5443333344455666777899999999999999976543 13789999999999999999
Q ss_pred EE--ecccccccccCcCHHHHHHHHHhhhhchh
Q 041333 304 LY--LGTVKVKNELPSTFKAYRYQQHRWSCGPA 334 (513)
Q Consensus 304 ~~--~~~~~~~~~~p~~~~~~~~Qr~RW~~G~~ 334 (513)
.+ .|++.++++.|+|++++++||.||.+|.+
T Consensus 210 ~~~~~~~a~~~~~~p~s~~~~~~QR~RW~~g~~ 242 (244)
T cd04190 210 KYLYVPGAVAETDVPETFVELLSQRRRWINSTI 242 (244)
T ss_pred EEEEecccEEEEECCCCHHHHHHHhHhhhcccc
Confidence 99 99999999999999999999999999975
No 21
>PLN02189 cellulose synthase
Probab=100.00 E-value=1.8e-30 Score=277.45 Aligned_cols=310 Identities=18% Similarity=0.273 Sum_probs=223.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc-CCCccc--cccCCCCCCcEEEEEeccC---Ch-HHHHHHHHHHHcC
Q 041333 50 IMSLMLLIERVYMSIVILLLKLSGRSPETRYKF-QPMKED--VELGNSSYPMVLVQIPMFN---ER-EVYQLSIGAACGL 122 (513)
Q Consensus 50 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~--~~~~~~~~P~VsIiIP~yn---e~-~~l~~~l~sl~~q 122 (513)
.+|++.+++.+++.+.++.-...++.|.++... +.+... .+..++++|.|+|.|+|-+ |+ -.+.+|+-|+++.
T Consensus 281 ~~W~~s~~~E~wFaf~Wll~q~~kw~Pv~R~t~~drL~~r~~~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~ 360 (1040)
T PLN02189 281 GLWLTSIICEIWFAVSWILDQFPKWFPIDRETYLDRLSLRYEREGEPNMLSPVDIFVSTVDPLKEPPLVTANTVLSILAM 360 (1040)
T ss_pred HHHHHHHHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhh
Confidence 346777778887777776666666666554322 111111 0111346999999999954 54 4778999999999
Q ss_pred CCCCCeeEEEEEeC-CCchhHHHHHHH----------------------------------------------HHHHh--
Q 041333 123 SWPSDRLIIQVLDD-STDLTIKDMVEL----------------------------------------------ECQRW-- 153 (513)
Q Consensus 123 ~yp~~~i~IiV~Dd-s~D~t~~~l~~~----------------------------------------------~~~~~-- 153 (513)
|||.+++-++|.|| ++.-|.+.+.|. ..++|
T Consensus 361 DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe 440 (1040)
T PLN02189 361 DYPVDKISCYVSDDGASMLTFEALSETAEFARKWVPFCKKFSIEPRAPEFYFSLKVDYLKDKVQPTFVKERRAMKREYEE 440 (1040)
T ss_pred cccccceeEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHH
Confidence 99999999999998 444455555440 00000
Q ss_pred --------h-----------------------------------c-------c---CccEEEEEcCCCCC----CChhHH
Q 041333 154 --------A-----------------------------------S-------K---GINIKYEVRDNRKG----YKAGAL 176 (513)
Q Consensus 154 --------~-----------------------------------~-------~---~~~v~~~~~~~~~g----~Ka~al 176 (513)
. + . -+++.|+.|+++.| +||||+
T Consensus 441 ~kvRI~~l~a~~~~~p~~~~~m~dGt~W~g~~~~dHp~IiQVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGAM 520 (1040)
T PLN02189 441 FKVRINAIVAKAQKVPPEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAM 520 (1040)
T ss_pred HHHHHHHHHhhcCccCCccceeccCccCCCCCCCCCHHHHHHHhcCCCCccccccccceeEEEeccCCCCCCcccchhhH
Confidence 0 0 0 01288999998776 699999
Q ss_pred HHHHHhccc-CCCcEEEEEcCCCCC-ChHHHHHHHHHHhcCC----CeeEEEeeEEEecCCCchHHHHHHhhhcchhhHH
Q 041333 177 REGMKRGYV-KSCDFVVIFDADFQP-ESDFLTRTIPFLVHNP----QLALVQARWEFVNADECLMTRLQEMSLDYHFTVE 250 (513)
Q Consensus 177 n~gl~~a~~-~~~d~I~~lDaD~~~-~pd~L~~l~~~~~~~~----~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~ 250 (513)
|..++.+.. .+++||+.+|+|+.+ +|+.+++.+.+| .|| +++.||.||.+.|.+++-. ........|.+.
T Consensus 521 NaLlRVSavmTNaPfILNLDCDmY~Nns~alr~AMCff-lDp~~g~~vAfVQFPQrF~~i~k~D~---Ygn~~~vffdi~ 596 (1040)
T PLN02189 521 NALIRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFL-MDPQIGRKVCYVQFPQRFDGIDTHDR---YANRNTVFFDIN 596 (1040)
T ss_pred HHHHHHhhhccCCCeEEEccCccccCchHHHHHhhhhh-cCCccCceeEEEeCccccCCCCCCCc---cCCccceeeeee
Confidence 999977643 699999999999888 579999999999 577 8999999999998765421 111223345556
Q ss_pred hhhcccCCCccccccceeeeeHHHHHHcC---------------------------------------------------
Q 041333 251 QEVGSSTHAFFGFNGTAGVWRIAAVNEAG--------------------------------------------------- 279 (513)
Q Consensus 251 ~~~~~~~~~~~~~~G~~~~~rr~~l~~~g--------------------------------------------------- 279 (513)
+.+.+..++++ ++|+++++||+++-...
T Consensus 597 ~~GlDGlqGP~-YvGTGC~fRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1040)
T PLN02189 597 MKGLDGIQGPV-YVGTGCVFRRQALYGYDPPKGPKRPKMVTCDCCPCFGRRKKKHAKNGLNGEVAALGGMESDKEMLMSQ 675 (1040)
T ss_pred ecccccCCCcc-ccccCceeeeeeeeccCcccccccccccccchhhhcccccccccccccccccccccccchhhhhhhhh
Confidence 66666666665 77999999988774210
Q ss_pred -------------------------------------------------------CCCCCCccchHHHHHHHhhCCCeEE
Q 041333 280 -------------------------------------------------------GWKDRTTVEDMDLAVRASLKGWKFL 304 (513)
Q Consensus 280 -------------------------------------------------------g~~~~~~~ED~~l~~rl~~~G~~i~ 304 (513)
||..++++||+..+++++.+|||.+
T Consensus 676 ~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTED~~TG~rlH~rGWrSv 755 (1040)
T PLN02189 676 MNFEKKFGQSAIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTDWGLELGWIYGSITEDILTGFKMHCRGWRSI 755 (1040)
T ss_pred hhhHhhhccchhhhhhhhhhhcCCCCCCCcHHHHHHHHHhhccccccCCchhhccCeeccccccHHHHHHHHHccCCceE
Confidence 3444457999999999999999999
Q ss_pred Eec--ccccccccCcCHHHHHHHHHhhhhchhHHHHhhcccccc---ccccCcchhhHHHHHHHH
Q 041333 305 YLG--TVKVKNELPSTFKAYRYQQHRWSCGPANLFRKMVMEIVR---NKKVSLWKKVHVIYSFFF 364 (513)
Q Consensus 305 ~~~--~~~~~~~~p~~~~~~~~Qr~RW~~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 364 (513)
|+. .+...+.+|+++.+.+.||.||+.|.+|++......++. .+++++.|++.++...++
T Consensus 756 Y~~p~r~AF~GlAP~~L~~~L~Qr~RWA~G~lqI~~sr~nPl~~g~~~~~L~l~QRL~Yl~~~ly 820 (1040)
T PLN02189 756 YCMPKRAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPLLYGYKGGNLKWLERFAYVNTTIY 820 (1040)
T ss_pred ecCCCcHHhcCcCCCCHHHHHHHHHHHhhhhHHHhhccCCccccccCCCCCCHHHHHHHHHHHHH
Confidence 994 355579999999999999999999999999644333432 356899999988766554
No 22
>PLN02195 cellulose synthase A
Probab=100.00 E-value=3.3e-30 Score=274.03 Aligned_cols=309 Identities=19% Similarity=0.287 Sum_probs=222.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCccccc-CCCcc--ccccCCCCCCcEEEEEeccC---Ch-HHHHHHHHHHHcCC
Q 041333 51 MSLMLLIERVYMSIVILLLKLSGRSPETRYKF-QPMKE--DVELGNSSYPMVLVQIPMFN---ER-EVYQLSIGAACGLS 123 (513)
Q Consensus 51 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~--~~~~~~~~~P~VsIiIP~yn---e~-~~l~~~l~sl~~q~ 123 (513)
+|++.+++.+++.+.++.-...++.|.++... +.+.. +.+.+++++|.|+|.|+|-+ |+ -.+.+|+-|+++.|
T Consensus 203 ~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~D 282 (977)
T PLN02195 203 LWLTSVICEIWFAFSWVLDQFPKWSPINRETYIDRLSARYEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVD 282 (977)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccceECHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhc
Confidence 46777778887777777766666777554322 11111 11112467999999999954 54 47789999999999
Q ss_pred CCCCeeEEEEEeC-CCchhHHHHHHH-----------------------------------------------------H
Q 041333 124 WPSDRLIIQVLDD-STDLTIKDMVEL-----------------------------------------------------E 149 (513)
Q Consensus 124 yp~~~i~IiV~Dd-s~D~t~~~l~~~-----------------------------------------------------~ 149 (513)
||.+++-++|.|| ++.-|.+.+.|. +
T Consensus 283 YP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~ 362 (977)
T PLN02195 283 YPVDKVSCYVSDDGAAMLSFESLVETAEFARKWVPFCKKYSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEY 362 (977)
T ss_pred ccccceEEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccCCCCchhHHHHHHHHHHHHHH
Confidence 9999999999998 444455544441 0
Q ss_pred ---HHHhhc---------------------------------------------cCccEEEEEcCCCCC----CChhHHH
Q 041333 150 ---CQRWAS---------------------------------------------KGINIKYEVRDNRKG----YKAGALR 177 (513)
Q Consensus 150 ---~~~~~~---------------------------------------------~~~~v~~~~~~~~~g----~Ka~aln 177 (513)
.+...+ .-+++.|+.|++++| +||||+|
T Consensus 363 k~RIe~~~~~~~~~~~~~~~m~d~t~W~g~~~~dHp~IIqVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGamN 442 (977)
T PLN02195 363 KVRVNALVAKAQKTPEEGWTMQDGTPWPGNNTRDHPGMIQVFLGETGARDIEGNELPRLVYVSREKRPGYQHHKKAGAEN 442 (977)
T ss_pred HHHHHHHHhhcccCCcccccccCCccCCCCCCCCCcchhhhhccCCCCcccccccCceeEEEeccCCCCCCcccccchhH
Confidence 000000 001277888888766 5999999
Q ss_pred HHHHhccc-CCCcEEEEEcCCCCC-ChHHHHHHHHHHhcCC----CeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHh
Q 041333 178 EGMKRGYV-KSCDFVVIFDADFQP-ESDFLTRTIPFLVHNP----QLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQ 251 (513)
Q Consensus 178 ~gl~~a~~-~~~d~I~~lDaD~~~-~pd~L~~l~~~~~~~~----~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ 251 (513)
.+++.+.. .++++|+.+|+|+.+ +++++++.+.+| .|| +++.||.|+.+.|.+++-. ..-.....+...+
T Consensus 443 allrvSavmTNap~il~lDcDmy~n~s~~lr~AMCf~-~D~~~g~~va~VQ~PQ~F~~i~~~D~---y~~~~~~ffd~~~ 518 (977)
T PLN02195 443 ALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFL-MDPVVGRDVCYVQFPQRFDGIDRSDR---YANRNVVFFDVNM 518 (977)
T ss_pred HHHHHhhhccCCCeEEEecCccccCcHHHHHHHHhhc-cCcccCCeeEEEcCCcccCCCCCCCC---CCcccceeeeeee
Confidence 99987643 689999999999777 557999999998 677 7789999999998765310 1112233455666
Q ss_pred hhcccCCCccccccceeeeeHHHHHHcC----------------------------------------------------
Q 041333 252 EVGSSTHAFFGFNGTAGVWRIAAVNEAG---------------------------------------------------- 279 (513)
Q Consensus 252 ~~~~~~~~~~~~~G~~~~~rr~~l~~~g---------------------------------------------------- 279 (513)
.+.+..+++. ++|+++++||+++-..+
T Consensus 519 ~g~dglqGP~-YvGTGC~fRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (977)
T PLN02195 519 KGLDGIQGPV-YVGTGCVFNRQALYGYGPPSLPRLPKSSSSSSSCCCPTKKKPEQDPSEIYRDAKREDLNAAIFNLREID 597 (977)
T ss_pred ccccccCCcc-ccccCceeeehhhhccCccccccccccccccccccccccccccccchhhcccccccccccccccccccc
Confidence 6666666665 77999999998875321
Q ss_pred --------------------------------------------------------------------CCCCCCccchHH
Q 041333 280 --------------------------------------------------------------------GWKDRTTVEDMD 291 (513)
Q Consensus 280 --------------------------------------------------------------------g~~~~~~~ED~~ 291 (513)
||..++++||+.
T Consensus 598 ~~~~~~~~~~~~~~~l~~~fG~S~~fi~S~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~ 677 (977)
T PLN02195 598 NYDEYERSMLISQMSFEKTFGLSSVFIESTLMENGGVPESANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDIL 677 (977)
T ss_pred ccchhhhhhhhhhhHHHHhhcccHHHHHHHHHHhcCCCCCCCcHHHHHHHHhhhcccCccccchhhhcCeeccceecHHH
Confidence 222334799999
Q ss_pred HHHHHhhCCCeEEEeccc--ccccccCcCHHHHHHHHHhhhhchhHHHHhhcccccc---ccccCcchhhHHHHHHHH
Q 041333 292 LAVRASLKGWKFLYLGTV--KVKNELPSTFKAYRYQQHRWSCGPANLFRKMVMEIVR---NKKVSLWKKVHVIYSFFF 364 (513)
Q Consensus 292 l~~rl~~~G~~i~~~~~~--~~~~~~p~~~~~~~~Qr~RW~~G~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 364 (513)
.+++++.+|||.+|++.. ...+.+|+++.+.+.||.||+.|.+|++......++. .+++++.|++.++...++
T Consensus 678 TG~rlH~rGWrSvY~~p~r~af~G~AP~~L~~~L~Qr~RWA~G~lqI~~sr~nPl~~g~~~~~L~~~QRL~Yl~~~ly 755 (977)
T PLN02195 678 TGFKMHCRGWRSIYCMPVRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPLWYGYGGGRLKWLQRLAYINTIVY 755 (977)
T ss_pred HHHHHHccCCcEEecCCccHHhcccCCCCHHHHHHHHHHHHhchhhhhhccCCccccccCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999753 4579999999999999999999999999744333332 367999999988766554
No 23
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.98 E-value=1.4e-31 Score=255.62 Aligned_cols=222 Identities=20% Similarity=0.217 Sum_probs=174.5
Q ss_pred cEEEEEeccCCh-HHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHH
Q 041333 98 MVLVQIPMFNER-EVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGAL 176 (513)
Q Consensus 98 ~VsIiIP~yne~-~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~al 176 (513)
+|||+||+|||+ +.+.+||+|+.+|+ | .+++| |+|+|+|++.+.+.+. .+...+.++. +++. ||++|+
T Consensus 1 ~isVvIp~~ne~~~~l~~~l~sl~~q~-~-~eiiv-vdd~s~d~~~~~l~~~------~~~~~~~v~~-~~~~-g~~~a~ 69 (235)
T cd06434 1 DVTVIIPVYDEDPDVFRECLRSILRQK-P-LEIIV-VTDGDDEPYLSILSQT------VKYGGIFVIT-VPHP-GKRRAL 69 (235)
T ss_pred CeEEEEeecCCChHHHHHHHHHHHhCC-C-CEEEE-EeCCCChHHHHHHHhh------ccCCcEEEEe-cCCC-ChHHHH
Confidence 489999999999 99999999999998 3 55544 7777888887755221 1234454543 4444 499999
Q ss_pred HHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHhhhccc
Q 041333 177 REGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQEVGSS 256 (513)
Q Consensus 177 n~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (513)
|.|++.+ ++|+|+++|+|+.++|++|++++..++ +|++++|++.....+.+.+.......................
T Consensus 70 n~g~~~a---~~d~v~~lD~D~~~~~~~l~~l~~~~~-~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (235)
T cd06434 70 AEGIRHV---TTDIVVLLDSDTVWPPNALPEMLKPFE-DPKVGGVGTNQRILRPRDSKWSFLAAEYLERRNEEIRAAMSY 145 (235)
T ss_pred HHHHHHh---CCCEEEEECCCceeChhHHHHHHHhcc-CCCEeEEcCceEeecCcccHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999 999999999999999999999999995 999999999988777654555544433333322222223334
Q ss_pred CCCccccccceeeeeHHHHHHcCCCCC----------CCccchHHHHHHHhhCCCeEEEecccccccccCcCHHHHHHHH
Q 041333 257 THAFFGFNGTAGVWRIAAVNEAGGWKD----------RTTVEDMDLAVRASLKGWKFLYLGTVKVKNELPSTFKAYRYQQ 326 (513)
Q Consensus 257 ~~~~~~~~G~~~~~rr~~l~~~gg~~~----------~~~~ED~~l~~rl~~~G~~i~~~~~~~~~~~~p~~~~~~~~Qr 326 (513)
.+...+.+|+++++||+++++.++..+ ...+||.+++.++.++||++.|.|++.++++.|.+++++++||
T Consensus 146 ~~~~~~~~G~~~~~rr~~l~~~~~~~~~~~~~~~~~~~~~~eD~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~q~ 225 (235)
T cd06434 146 DGGVPCLSGRTAAYRTEILKDFLFLEEFTNETFMGRRLNAGDDRFLTRYVLSHGYKTVYQYTSEAYTETPENYKKFLKQQ 225 (235)
T ss_pred CCCEEEccCcHHHHHHHHHhhhhhHHHhhhhhhcCCCCCcCchHHHHHHHHHCCCeEEEecCCeEEEEcchhHHHHHHHh
Confidence 455566789999999999998753322 2478999999999999999999999999999999999999999
Q ss_pred Hhhhhchh
Q 041333 327 HRWSCGPA 334 (513)
Q Consensus 327 ~RW~~G~~ 334 (513)
.||.+|..
T Consensus 226 ~Rw~~~~~ 233 (235)
T cd06434 226 LRWSRSNW 233 (235)
T ss_pred hhhhhccc
Confidence 99999864
No 24
>PLN02248 cellulose synthase-like protein
Probab=99.98 E-value=1.4e-29 Score=271.21 Aligned_cols=200 Identities=19% Similarity=0.308 Sum_probs=154.6
Q ss_pred EEEEEcCCCCC----CChhHHHHHHHhccc-CCCcEEEEEcCCCCC-ChHHHHHHHHHHhcC---CCeeEEEeeEEEecC
Q 041333 160 IKYEVRDNRKG----YKAGALREGMKRGYV-KSCDFVVIFDADFQP-ESDFLTRTIPFLVHN---PQLALVQARWEFVNA 230 (513)
Q Consensus 160 v~~~~~~~~~g----~Ka~aln~gl~~a~~-~~~d~I~~lDaD~~~-~pd~L~~l~~~~~~~---~~v~~V~~~~~~~n~ 230 (513)
+.|+.|+++.| +||||+|..++.+.. .+++||+.+|+|+.+ +++.+++.+.+| .| ++++.||.+|.+.|.
T Consensus 587 LVYVSREKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~-lD~~g~~vAfVQFPQrF~~I 665 (1135)
T PLN02248 587 LVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFM-MDRGGDRICYVQFPQRFEGI 665 (1135)
T ss_pred eEEEecccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcchhe-ecCCCCceEEEcCCcccCCC
Confidence 56777777655 699999999986543 699999999999887 677999999999 45 799999999999987
Q ss_pred CCchHHHHHHhhhcchhhHHhhhcccCCCccccccceeeeeHHHHHHcC-------------------------------
Q 041333 231 DECLMTRLQEMSLDYHFTVEQEVGSSTHAFFGFNGTAGVWRIAAVNEAG------------------------------- 279 (513)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~g------------------------------- 279 (513)
+++-. ........|.+.+.+.+..+++. ++|+++++||+++-..+
T Consensus 666 ~k~D~---Ygn~~~Vffdi~~~GlDGlqGP~-YvGTGCffRR~ALYG~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 741 (1135)
T PLN02248 666 DPSDR---YANHNTVFFDVNMRALDGLQGPV-YVGTGCLFRRIALYGFDPPRAKEHSGCFGSCKFTKKKKKETSASEPEE 741 (1135)
T ss_pred CCCCc---cCCcceeeeeeeeccccccCCcc-ccccCceeeehhhcCcCCcccccccccccccccccccccccccccccc
Confidence 65421 11123344555666666666655 77999999998875310
Q ss_pred --------------------------------------------------------------------------------
Q 041333 280 -------------------------------------------------------------------------------- 279 (513)
Q Consensus 280 -------------------------------------------------------------------------------- 279 (513)
T Consensus 742 ~~~~~~~~~~~~~~~~~rfG~S~~fi~S~~~a~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~ 821 (1135)
T PLN02248 742 QPDLEDDDDLELSLLPKRFGNSTMFAASIPVAEFQGRPLADHPSVKNGRPPGALTVPREPLDAATVAEAISVISCWYEDK 821 (1135)
T ss_pred cccccccchhhhhhhhhhhccchhhhhhhHHHhhcccccccccccccccccccccccccCCcHHHHHHHHhhcccccccC
Confidence
Q ss_pred -------CCCCCCccchHHHHHHHhhCCCeEEEec--ccccccccCcCHHHHHHHHHhhhhchhHHHHhhcccccccccc
Q 041333 280 -------GWKDRTTVEDMDLAVRASLKGWKFLYLG--TVKVKNELPSTFKAYRYQQHRWSCGPANLFRKMVMEIVRNKKV 350 (513)
Q Consensus 280 -------g~~~~~~~ED~~l~~rl~~~G~~i~~~~--~~~~~~~~p~~~~~~~~Qr~RW~~G~~~~~~~~~~~~~~~~~~ 350 (513)
||..++++||+..+++++.+|||.+|++ .....+.+|+++.+++.||.||+.|.+|++......++..+++
T Consensus 822 T~WG~evG~~YGSvTEDv~TGlrLH~rGWrSvY~~p~r~AF~GlAP~~L~d~L~Qr~RWA~G~lQIf~sr~~Pll~~~~L 901 (1135)
T PLN02248 822 TEWGDRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLTDRLHQVLRWATGSVEIFFSRNNALLASRRL 901 (1135)
T ss_pred CchhhhcCeeecceechHHHHHHHHhcCCceEeCCCChHhhcCCCCCCHHHHHHHHHHHhhchHHHHhccCCccccCCCC
Confidence 3333447999999999999999999984 3445799999999999999999999999997654445556789
Q ss_pred CcchhhHHHHHHHH
Q 041333 351 SLWKKVHVIYSFFF 364 (513)
Q Consensus 351 ~~~~~~~~~~~~~~ 364 (513)
++.|++.++...++
T Consensus 902 sl~QRL~Yl~~~ly 915 (1135)
T PLN02248 902 KFLQRIAYLNVGIY 915 (1135)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999998765444
No 25
>PLN02190 cellulose synthase-like protein
Probab=99.98 E-value=1.9e-29 Score=262.89 Aligned_cols=370 Identities=19% Similarity=0.278 Sum_probs=244.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCccccccCCCCCCcEEEEEeccC---Ch-HHHHHHHHHHHcCCCCCC
Q 041333 52 SLMLLIERVYMSIVILLLKLSGRSPETRYKFQPMKEDVELGNSSYPMVLVQIPMFN---ER-EVYQLSIGAACGLSWPSD 127 (513)
Q Consensus 52 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~P~VsIiIP~yn---e~-~~l~~~l~sl~~q~yp~~ 127 (513)
|+.++++++++.+.++.....+++|.++.. .++.....-+++|.|+|.|+++| |+ ..+.+|+.|+++.|||.+
T Consensus 51 W~~~~~~E~wf~~~WlL~q~~kw~pv~r~~---~p~~l~~r~~~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~e 127 (756)
T PLN02190 51 WLVAFLCESCFSFVWLLITCIKWSPAEYKP---YPDRLDERVHDLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPAN 127 (756)
T ss_pred HHHHHHHHHHHHHHHHHhccceeeecCCCC---CcHHHHHhhccCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCcc
Confidence 455777888777777776666777765532 22211111246899999999999 87 788999999999999999
Q ss_pred eeEEEEEeCC-CchhHHHHHHHH---------H----------------------------------HHhh-------c-
Q 041333 128 RLIIQVLDDS-TDLTIKDMVELE---------C----------------------------------QRWA-------S- 155 (513)
Q Consensus 128 ~i~IiV~Dds-~D~t~~~l~~~~---------~----------------------------------~~~~-------~- 155 (513)
++-++|.||+ +.-|.+.+.|.. | ++|. +
T Consensus 128 klscYvSDDG~s~LT~~al~EAa~FA~~WvPFCrK~~IepRaPe~YF~~~~~~~~~~~f~~e~~~~K~eYee~k~ri~~a 207 (756)
T PLN02190 128 KLACYVSDDGCSPLTYFSLKEASKFAKIWVPFCKKYNVRVRAPFRYFLNPPVATEDSEFSKDWEMTKREYEKLSRKVEDA 207 (756)
T ss_pred ccceEEecCCCcHhHHHHHHHHHHHHhhhcccccccCCCcCCHHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999984 445555555510 0 0000 0
Q ss_pred ------------------------------------------cCccEEEEEcCCCCC----CChhHHHHHHHhccc-CCC
Q 041333 156 ------------------------------------------KGINIKYEVRDNRKG----YKAGALREGMKRGYV-KSC 188 (513)
Q Consensus 156 ------------------------------------------~~~~v~~~~~~~~~g----~Ka~aln~gl~~a~~-~~~ 188 (513)
.-+++.|+.|++++| +||||+|..++.+.. .++
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~dH~~iiqVll~~~~~~~~~~~lP~LVYvSREKrP~~~Hh~KAGAmNaLlRVSavmtNa 287 (756)
T PLN02190 208 TGDSHWLDAEDDFEAFSNTKPNDHSTIVKVVWENKGGVGDEKEVPHLVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNA 287 (756)
T ss_pred ccCCCCcccCCcccccCCCCCCCCccceEEEecCCCCccccccCceEEEEeccCCCCCCcccccchhHHHHHHhhhhccC
Confidence 012367888887766 699999999988654 799
Q ss_pred cEEEEEcCCCCC-ChHHHHHHHHHHhcCC----CeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHhhhcccCCCcccc
Q 041333 189 DFVVIFDADFQP-ESDFLTRTIPFLVHNP----QLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQEVGSSTHAFFGF 263 (513)
Q Consensus 189 d~I~~lDaD~~~-~pd~L~~l~~~~~~~~----~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (513)
++|+.+|+|... +|+.+++.+.+|.+++ +++.||.||.+.+...+- ....+.....+-+...++. +
T Consensus 288 P~iLnlDCDmY~Nns~~~r~AmCf~ld~~~~~~~~~fVQfPQ~F~D~y~n~--------~~v~f~~~~~GldGlqGP~-Y 358 (756)
T PLN02190 288 PYMLNVDCDMYANEADVVRQAMCIFLQKSKNSNHCAFVQFPQEFYDSNTNE--------LTVLQSYLGRGIAGIQGPI-Y 358 (756)
T ss_pred CeEEEecCccccCchhHHHHhhhhhcCCCCCCCeeEEEeCchhhccccCcc--------ceEEEEEeeccccccCCcc-c
Confidence 999999999855 8999999999985332 589999999886432221 1122222223333444433 5
Q ss_pred ccceeeeeHHHHHH------------------------------------------------------------c-----
Q 041333 264 NGTAGVWRIAAVNE------------------------------------------------------------A----- 278 (513)
Q Consensus 264 ~G~~~~~rr~~l~~------------------------------------------------------------~----- 278 (513)
.|+++++||+++-. .
T Consensus 359 vGTGCffrR~alyG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~fg~s~~f~~s~~~~~~~~~~~~~~~~~~~~eA~~V~s 438 (756)
T PLN02190 359 IGSGCFHTRRVMYGLSSDDLEDDGSLSSVATREFLAEDSLAREFGNSKEMVKSVVDALQRKPNPQNSLTNSIEAAQEVGH 438 (756)
T ss_pred ccCCcceEeeeecCCCcccccccccccccccccccchhhhhhhcCCcHHHHHHHHHHhccCCCCccchHHHHHHHHhhcc
Confidence 57777776655431 0
Q ss_pred ------------CCCCCCCccchHHHHHHHhhCCCeEEEecc--cccccccCcCHHHHHHHHHhhhhchhHHHHhhcccc
Q 041333 279 ------------GGWKDRTTVEDMDLAVRASLKGWKFLYLGT--VKVKNELPSTFKAYRYQQHRWSCGPANLFRKMVMEI 344 (513)
Q Consensus 279 ------------gg~~~~~~~ED~~l~~rl~~~G~~i~~~~~--~~~~~~~p~~~~~~~~Qr~RW~~G~~~~~~~~~~~~ 344 (513)
-||..++++||..++.+++.+|||.+|++. +...+..|+++.+...||.||+.|.+|++......+
T Consensus 439 C~YE~~T~WG~evG~~ygSitED~~TGl~mh~rGWrSvY~~p~~~AFlG~aP~~l~~~L~Q~~RWa~G~lqI~fsr~nPl 518 (756)
T PLN02190 439 CHYEYQTSWGNTIGWLYDSVAEDLNTSIGIHSRGWTSSYISPDPPAFLGSMPPGGPEAMVQQRRWATGLIEVLFNKQSPL 518 (756)
T ss_pred cCCCCCCchhhccCcccceeechHHHHHHHHccCCceEecCCCchhhcCcCCCChHHHhhhhhhHhhhhHHHHHhcCCCc
Confidence 056666789999999999999999999863 334688999999999999999999999986543333
Q ss_pred cc--ccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccchhHHHHHHHHHH---------HH----
Q 041333 345 VR--NKKVSLWKKVHVIYSFFFVRKIIAHIITFVLYCVVLPATVVIP-EVQVPKSIHLLVFWILF---------EN---- 408 (513)
Q Consensus 345 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~l~~-~~~~p~~~~~~~~~~~~---------~~---- 408 (513)
+. .+++++.|++.++...+ ... ..|. ....++|...++. ...+|+.....+++.++ |.
T Consensus 519 ~~g~~~~L~l~QRLaYl~~~~-~~~-sip~----l~Y~~lP~l~Ll~g~~i~P~~~~~~~~~~l~~~~~~~~l~E~~~sG 592 (756)
T PLN02190 519 IGMFCRKIRFRQRLAYLYVFT-CLR-SIPE----LIYCLLPAYCLLHNSALFPKGVYLGIIVTLVGMHCLYTLWEFMSLG 592 (756)
T ss_pred eeccCCCCCHHHHHHHHHHHH-HHH-HHHH----HHHHHHHHHHHHcCCccccCccHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33 47899999998775433 111 1111 2223455555443 33344322222222221 11
Q ss_pred --HHHHHH-------------HHHHHHHHhcC--CCccceEEeeeccc
Q 041333 409 --VMSLHR-------------TMATFIGLLEG--VRVNEWIVTEKLGG 439 (513)
Q Consensus 409 --~~s~~~-------------~~a~~~~l~~~--~~~~~~~~T~K~g~ 439 (513)
+..+|| ..|++.++++. +++..|.+|.|..+
T Consensus 593 ~s~~~WWnnqr~w~I~~~sa~l~a~~~~~lK~lg~s~~~F~vTsK~~~ 640 (756)
T PLN02190 593 FSVQSWYVSQSFWRIKATSSWLFSIQDIILKLLGISKTVFIVTKKTMP 640 (756)
T ss_pred CcHHHHHhhhheEEeecchHHHHHHHHHHHHHhccccceEEEeecccc
Confidence 122333 34677777775 67889999999654
No 26
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=99.97 E-value=1.4e-29 Score=271.43 Aligned_cols=310 Identities=19% Similarity=0.294 Sum_probs=222.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc-CCCccc--cccCCCCCCcEEEEEeccC---Ch-HHHHHHHHHHHcC
Q 041333 50 IMSLMLLIERVYMSIVILLLKLSGRSPETRYKF-QPMKED--VELGNSSYPMVLVQIPMFN---ER-EVYQLSIGAACGL 122 (513)
Q Consensus 50 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~--~~~~~~~~P~VsIiIP~yn---e~-~~l~~~l~sl~~q 122 (513)
.+|++.+++.+++.+.++.-...++.|.++... +.+... .+..++++|.|+|.|+|-+ |+ -.+.+|+-|+++.
T Consensus 299 ~~Wl~s~~cE~WFaf~Wll~q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~ 378 (1079)
T PLN02638 299 ALWLISVICEIWFALSWILDQFPKWLPVNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAV 378 (1079)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccccccCHHHHHHHhccCCCcccCCCccEEEeCCCCccCccHHHHHHHHHHHhh
Confidence 346777788887777777766667777654322 111110 0112456999999999954 54 4788999999999
Q ss_pred CCCCCeeEEEEEeC-CCchhHHHHHHHH---------H-------------------------------------HHh--
Q 041333 123 SWPSDRLIIQVLDD-STDLTIKDMVELE---------C-------------------------------------QRW-- 153 (513)
Q Consensus 123 ~yp~~~i~IiV~Dd-s~D~t~~~l~~~~---------~-------------------------------------~~~-- 153 (513)
|||.+++-++|.|| ++.-|.+.+.|.. | ++|
T Consensus 379 DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe 458 (1079)
T PLN02638 379 DYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEE 458 (1079)
T ss_pred cccccceeEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHH
Confidence 99999999999998 4445555554410 0 000
Q ss_pred --------h-------c--------------------------------------cCccEEEEEcCCCCC----CChhHH
Q 041333 154 --------A-------S--------------------------------------KGINIKYEVRDNRKG----YKAGAL 176 (513)
Q Consensus 154 --------~-------~--------------------------------------~~~~v~~~~~~~~~g----~Ka~al 176 (513)
. . .-+++.|+.|+++.| +||||+
T Consensus 459 ~k~RIe~l~a~~~~~p~~~~~m~dgt~W~g~~~~dHp~IiqVll~~~~~~d~~g~~lP~LVYVSREKRPg~~Hh~KAGAM 538 (1079)
T PLN02638 459 FKVRINGLVAKAQKVPEEGWIMQDGTPWPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAM 538 (1079)
T ss_pred HHHHHHHHHhhccccCCccccccCCccCCCCCCCCCHHHHHHHhcCCCccccccccccceEEEecccCCCCCcccccchH
Confidence 0 0 001258999998776 699999
Q ss_pred HHHHHhccc-CCCcEEEEEcCCCCC-ChHHHHHHHHHHhcCCC----eeEEEeeEEEecCCCchHHHHHHhhhcchhhHH
Q 041333 177 REGMKRGYV-KSCDFVVIFDADFQP-ESDFLTRTIPFLVHNPQ----LALVQARWEFVNADECLMTRLQEMSLDYHFTVE 250 (513)
Q Consensus 177 n~gl~~a~~-~~~d~I~~lDaD~~~-~pd~L~~l~~~~~~~~~----v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~ 250 (513)
|..++.+.. .+++||+.+|+|+.+ +|+.+++.+.+| .||+ ++.||.||.+.|.+++-. ........|.+.
T Consensus 539 NaLlRVSavmTNaPfILNLDCDmYiNns~alr~AMCf~-lDp~~g~~vafVQFPQrF~~i~k~D~---Ygn~~~vffdi~ 614 (1079)
T PLN02638 539 NALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFL-MDPNLGKSVCYVQFPQRFDGIDRNDR---YANRNTVFFDIN 614 (1079)
T ss_pred HHHHHHhhhccCCCeEeecccCcccCchHHHHHhhhhh-cCcccCCeeEEecCCcccCCCCCCCc---ccccceeeeccc
Confidence 999977644 699999999999877 599999999999 5775 889999999988765421 111233445566
Q ss_pred hhhcccCCCccccccceeeeeHHHHHHc------------------C---------------------------------
Q 041333 251 QEVGSSTHAFFGFNGTAGVWRIAAVNEA------------------G--------------------------------- 279 (513)
Q Consensus 251 ~~~~~~~~~~~~~~G~~~~~rr~~l~~~------------------g--------------------------------- 279 (513)
+.+.+...++. ++|+++++||+++-.. |
T Consensus 615 ~~GlDGlqGP~-YvGTGC~fRR~ALYG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1079)
T PLN02638 615 LRGLDGIQGPV-YVGTGCVFNRTALYGYEPPIKPKHKKPGFLSSLCGGSRKKSSKSSKKGSDKKKSGKHVDPTVPVFNLE 693 (1079)
T ss_pred cccccccCCcc-ccccCcceeehhhcCcCCcccccccccccccccccccccccccccchhhccccccccccccccccccc
Confidence 66666666655 7799999999886432 0
Q ss_pred ----------------------------------------------------------------------------CCCC
Q 041333 280 ----------------------------------------------------------------------------GWKD 283 (513)
Q Consensus 280 ----------------------------------------------------------------------------g~~~ 283 (513)
||..
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~Y 773 (1079)
T PLN02638 694 DIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIY 773 (1079)
T ss_pred cccccccccccchhhhhhhhhhhhhhhccccHHHHHHHHHhhcCCCCCCCcHHHHHHHHhhccCCCccCCchhhhcCeee
Confidence 1222
Q ss_pred CCccchHHHHHHHhhCCCeEEEe-ccc-ccccccCcCHHHHHHHHHhhhhchhHHHHhhcccccc--ccccCcchhhHHH
Q 041333 284 RTTVEDMDLAVRASLKGWKFLYL-GTV-KVKNELPSTFKAYRYQQHRWSCGPANLFRKMVMEIVR--NKKVSLWKKVHVI 359 (513)
Q Consensus 284 ~~~~ED~~l~~rl~~~G~~i~~~-~~~-~~~~~~p~~~~~~~~Qr~RW~~G~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 359 (513)
++++||+..+++++.+|||.+|+ |+. ...+.+|+++.+++.||.||+.|.+|++......++. ++++++.+++.++
T Consensus 774 GSvTEDv~TG~rLH~rGWrSvY~~P~r~AF~GlAP~~l~d~L~Qr~RWA~G~lqI~fsr~nPl~~G~~~rL~l~QRL~Yl 853 (1079)
T PLN02638 774 GSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKWLERFAYV 853 (1079)
T ss_pred cceecHHHHHHHHHcCCCcEEecCCCchHhcCcCCCCHHHHHHHHHHHhhcchheeeccCCccccccCCCCCHHHHHHHH
Confidence 33799999999999999999999 443 3579999999999999999999999998633233332 4679999999887
Q ss_pred HHHHH
Q 041333 360 YSFFF 364 (513)
Q Consensus 360 ~~~~~ 364 (513)
...++
T Consensus 854 ~~~~y 858 (1079)
T PLN02638 854 NTTIY 858 (1079)
T ss_pred HHHHH
Confidence 65443
No 27
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.97 E-value=3.7e-29 Score=255.63 Aligned_cols=231 Identities=18% Similarity=0.185 Sum_probs=164.4
Q ss_pred CCCCCcEEEEEeccCChHHHHHHHHHHHcCCCCC-CeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCC---C
Q 041333 93 NSSYPMVLVQIPMFNEREVYQLSIGAACGLSWPS-DRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDN---R 168 (513)
Q Consensus 93 ~~~~P~VsIiIP~yne~~~l~~~l~sl~~q~yp~-~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~---~ 168 (513)
++..|+|||+||+|||++.+++||+|+++|+||+ .|+ |+|+|+|+|+|.+. +++..++++ ...++++++.++ .
T Consensus 36 ~~~~p~VSVIIpa~Ne~~~L~~~L~sL~~q~yp~~~eI-IVVDd~StD~T~~i-~~~~~~~~~-~~~~i~vi~~~~~~~g 112 (384)
T TIGR03469 36 PEAWPAVVAVVPARNEADVIGECVTSLLEQDYPGKLHV-ILVDDHSTDGTADI-ARAAARAYG-RGDRLTVVSGQPLPPG 112 (384)
T ss_pred CCCCCCEEEEEecCCcHhHHHHHHHHHHhCCCCCceEE-EEEeCCCCCcHHHH-HHHHHHhcC-CCCcEEEecCCCCCCC
Confidence 4568999999999999999999999999999995 343 33666689988774 444433331 113677776432 2
Q ss_pred CCCChhHHHHHHHhcccCC-----CcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhh
Q 041333 169 KGYKAGALREGMKRGYVKS-----CDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSL 243 (513)
Q Consensus 169 ~g~Ka~aln~gl~~a~~~~-----~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~ 243 (513)
.++|+.|+|.|++.+ + +|+++++|+|+.++||+++++++.+ +++++++|++...... .++..+......
T Consensus 113 ~~Gk~~A~n~g~~~A---~~~~~~gd~llflDaD~~~~p~~l~~lv~~~-~~~~~~~vs~~~~~~~--~~~~~~~~~~~~ 186 (384)
T TIGR03469 113 WSGKLWAVSQGIAAA---RTLAPPADYLLLTDADIAHGPDNLARLVARA-RAEGLDLVSLMVRLRC--ESFWEKLLIPAF 186 (384)
T ss_pred CcchHHHHHHHHHHH---hccCCCCCEEEEECCCCCCChhHHHHHHHHH-HhCCCCEEEecccccC--CCHHHHHHHHHH
Confidence 236899999999999 7 9999999999999999999999999 4566777877655433 233332211111
Q ss_pred cchhhHH---hhhcccCCCccccccceeeeeHHHHHHcCCCCC--CCccchHHHHHHHhhCCCeEEEecccccc-cccCc
Q 041333 244 DYHFTVE---QEVGSSTHAFFGFNGTAGVWRIAAVNEAGGWKD--RTTVEDMDLAVRASLKGWKFLYLGTVKVK-NELPS 317 (513)
Q Consensus 244 ~~~~~~~---~~~~~~~~~~~~~~G~~~~~rr~~l~~~gg~~~--~~~~ED~~l~~rl~~~G~~i~~~~~~~~~-~~~p~ 317 (513)
...+... ..............|+++++||++++++|||++ ....||.+++.|++++|+++.+.+..... ....+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~lirr~~~~~vGGf~~~~~~~~ED~~L~~r~~~~G~~v~~~~~~~~~s~r~~~ 266 (384)
T TIGR03469 187 VFFFQKLYPFRWVNDPRRRTAAAAGGCILIRREALERIGGIAAIRGALIDDCTLAAAVKRSGGRIWLGLAARTRSLRPYD 266 (384)
T ss_pred HHHHHHhcchhhhcCCCccceeecceEEEEEHHHHHHcCCHHHHhhCcccHHHHHHHHHHcCCcEEEEecCceEEEEecC
Confidence 0000000 001111122233569999999999999999987 35889999999999999999998765543 34456
Q ss_pred CHHHHHHHHHhhhhc
Q 041333 318 TFKAYRYQQHRWSCG 332 (513)
Q Consensus 318 ~~~~~~~Qr~RW~~G 332 (513)
++++.++|+.||...
T Consensus 267 ~~~~~~~~~~r~~~~ 281 (384)
T TIGR03469 267 GLGEIWRMIARTAYT 281 (384)
T ss_pred CHHHHHHHHHHhHHH
Confidence 889999999998543
No 28
>PLN02400 cellulose synthase
Probab=99.97 E-value=2.5e-29 Score=269.63 Aligned_cols=310 Identities=20% Similarity=0.264 Sum_probs=219.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc-CCCcc--ccccCCCCCCcEEEEEeccC---Ch-HHHHHHHHHHHcC
Q 041333 50 IMSLMLLIERVYMSIVILLLKLSGRSPETRYKF-QPMKE--DVELGNSSYPMVLVQIPMFN---ER-EVYQLSIGAACGL 122 (513)
Q Consensus 50 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~--~~~~~~~~~P~VsIiIP~yn---e~-~~l~~~l~sl~~q 122 (513)
.+|++.+++.+++.+.++.-...++.|.++... +.+.. +.+..++++|.|+|.|+|-+ |+ -.+.+|+-|+++.
T Consensus 306 ~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~ 385 (1085)
T PLN02400 306 GLWLTSVICEIWFALSWLLDQFPKWYPINRETYLDRLALRYDRDGEPSQLAPVDVFVSTVDPLKEPPLVTANTVLSILAV 385 (1085)
T ss_pred HHHHHHHHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhh
Confidence 346777788887777777766666666554322 11111 00112457999999999954 54 4778999999999
Q ss_pred CCCCCeeEEEEEeC-CCchhHHHHHHH---------HHH-------------------------------------Hh--
Q 041333 123 SWPSDRLIIQVLDD-STDLTIKDMVEL---------ECQ-------------------------------------RW-- 153 (513)
Q Consensus 123 ~yp~~~i~IiV~Dd-s~D~t~~~l~~~---------~~~-------------------------------------~~-- 153 (513)
|||.+++-++|.|| ++.-|.+.+.|. +|+ +|
T Consensus 386 DYP~eKlscYvSDDGgS~LTf~Al~Eaa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe 465 (1085)
T PLN02400 386 DYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEE 465 (1085)
T ss_pred cccccceEEEEecCCchHHHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCCCchhhHHHHHHHHHHHHH
Confidence 99999999999998 444555555441 000 00
Q ss_pred --------h-------c--------------------------------------cCccEEEEEcCCCCC----CChhHH
Q 041333 154 --------A-------S--------------------------------------KGINIKYEVRDNRKG----YKAGAL 176 (513)
Q Consensus 154 --------~-------~--------------------------------------~~~~v~~~~~~~~~g----~Ka~al 176 (513)
. + .-+++.|+.|++++| +||||+
T Consensus 466 ~k~RIe~l~~~~~~~~~~~~~m~dgt~W~g~~~~dHp~iIqVll~~~~~~d~~g~~LP~LVYVSREKRP~~~Hh~KAGAM 545 (1085)
T PLN02400 466 FKVRINALVAKAQKIPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAM 545 (1085)
T ss_pred HHHHHHHHHhhhccCCccccccccCccCCCCCCCCCchhhhhhhcCCCCcccccccCceeEEEeccCCCCCCcchhhhhh
Confidence 0 0 001278899998877 699999
Q ss_pred HHHHHhccc-CCCcEEEEEcCCCCC-ChHHHHHHHHHHhcCC----CeeEEEeeEEEecCCCchHHHHHHhhhcchhhHH
Q 041333 177 REGMKRGYV-KSCDFVVIFDADFQP-ESDFLTRTIPFLVHNP----QLALVQARWEFVNADECLMTRLQEMSLDYHFTVE 250 (513)
Q Consensus 177 n~gl~~a~~-~~~d~I~~lDaD~~~-~pd~L~~l~~~~~~~~----~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~ 250 (513)
|..++.+.. .+++||+.+|+|... +|+.+++.+.+| .|| +++.||.++++.|.+++-.- .......|.+.
T Consensus 546 NaLlRVSavmTNaP~ILNlDCDmY~Nns~a~r~AMCf~-lD~~~g~~~afVQFPQrF~gi~~~D~Y---~n~~~vffdi~ 621 (1085)
T PLN02400 546 NALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFM-MDPAIGKKTCYVQFPQRFDGIDLHDRY---ANRNIVFFDIN 621 (1085)
T ss_pred HHHHHHhhhhcCCceEEecccccccCCchhHHhhhhhe-eccCCCceeEEEeCCcccCCCCCCCCc---ccceeEEeecc
Confidence 999997643 799999999999777 899999999998 455 78999999999887654211 11222233444
Q ss_pred hhhcccCCCccccccceeeeeHHHHHHc----------------------------------------------------
Q 041333 251 QEVGSSTHAFFGFNGTAGVWRIAAVNEA---------------------------------------------------- 278 (513)
Q Consensus 251 ~~~~~~~~~~~~~~G~~~~~rr~~l~~~---------------------------------------------------- 278 (513)
..+-+...++. +.|+++++||+++-..
T Consensus 622 ~~GldGlqGP~-YvGTGC~frR~aLYG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1085)
T PLN02400 622 LKGLDGIQGPV-YVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKSCCGSRKKGKGSKKYNIDKKRAMKRTESNVPIFNME 700 (1085)
T ss_pred ccccccCCCcc-ccccCcceeeeeeccCCCcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 44444444443 5677777777665310
Q ss_pred -------------------------------------------------------------------------CCCCCCC
Q 041333 279 -------------------------------------------------------------------------GGWKDRT 285 (513)
Q Consensus 279 -------------------------------------------------------------------------gg~~~~~ 285 (513)
-||..++
T Consensus 701 ~~~~~~~~~~~~~~~~~~~~~l~~~fG~S~~fi~S~~~~~~~~~~~~~~~~ll~eA~~V~sC~YE~~T~WG~evGwiYGS 780 (1085)
T PLN02400 701 DIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGS 780 (1085)
T ss_pred ccccccccccchhhhhhhhhhhhhhccccHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhccCCccCCchhhhhCeeccc
Confidence 0344455
Q ss_pred ccchHHHHHHHhhCCCeEEEec--ccccccccCcCHHHHHHHHHhhhhchhHHHHhhcccccc--ccccCcchhhHHHHH
Q 041333 286 TVEDMDLAVRASLKGWKFLYLG--TVKVKNELPSTFKAYRYQQHRWSCGPANLFRKMVMEIVR--NKKVSLWKKVHVIYS 361 (513)
Q Consensus 286 ~~ED~~l~~rl~~~G~~i~~~~--~~~~~~~~p~~~~~~~~Qr~RW~~G~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 361 (513)
++||+.++++++.+|||.+|+. .+...+.+|+++.+++.||.||+.|.+|++......++. .+++++.|++.++..
T Consensus 781 vTED~~TG~~LH~rGWrSvY~~p~r~af~GlAP~~l~d~L~Qr~RWA~G~lqI~~sr~nPl~~G~~~~L~l~QRL~Yl~~ 860 (1085)
T PLN02400 781 VTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINT 860 (1085)
T ss_pred eechHHHHHHHHccCCceEecCCCcHhhcCcCCCCHHHHHHHHHHHhhcchheeeccCCccccccCCCCCHHHHHHHHHH
Confidence 7999999999999999999995 446689999999999999999999999998754333442 467999999998776
Q ss_pred HHH
Q 041333 362 FFF 364 (513)
Q Consensus 362 ~~~ 364 (513)
.++
T Consensus 861 ~~y 863 (1085)
T PLN02400 861 IVY 863 (1085)
T ss_pred HHH
Confidence 554
No 29
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.97 E-value=7.6e-30 Score=246.20 Aligned_cols=225 Identities=23% Similarity=0.283 Sum_probs=174.5
Q ss_pred CCCCCcEEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEE-EeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCC
Q 041333 93 NSSYPMVLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQV-LDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGY 171 (513)
Q Consensus 93 ~~~~P~VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV-~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~ 171 (513)
.+..|++||+||+|||++.+.+||+|+.+|+||+++.+|+| +|+|+|+|.+. +++ +..+ +++++..+++.|
T Consensus 25 ~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~-~~~----~~~~--~v~~i~~~~~~g- 96 (251)
T cd06439 25 PAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEI-ARE----YADK--GVKLLRFPERRG- 96 (251)
T ss_pred CCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHH-HHH----HhhC--cEEEEEcCCCCC-
Confidence 45678999999999999999999999999999986444444 45577777664 332 2222 577777776665
Q ss_pred ChhHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHh
Q 041333 172 KAGALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQ 251 (513)
Q Consensus 172 Ka~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ 251 (513)
|++|+|.|++.+ ++|+++++|+|+.++|+++++++..+ +++++++|++.....+++. ............ ....
T Consensus 97 ~~~a~n~gi~~a---~~d~i~~lD~D~~~~~~~l~~l~~~~-~~~~~~~v~~~~~~~~~~~--~~~~~~~~~~~~-~~~~ 169 (251)
T cd06439 97 KAAALNRALALA---TGEIVVFTDANALLDPDALRLLVRHF-ADPSVGAVSGELVIVDGGG--SGSGEGLYWKYE-NWLK 169 (251)
T ss_pred hHHHHHHHHHHc---CCCEEEEEccccCcCHHHHHHHHHHh-cCCCccEEEeEEEecCCcc--cchhHHHHHHHH-HHHH
Confidence 999999999999 99999999999999999999999999 6889999999887765532 111001000010 0011
Q ss_pred hhcccCCCccccccceeeeeHHHHHHcCCCCCCCccchHHHHHHHhhCCCeEEEecccccccccCcCHHHHHHHHHhhhh
Q 041333 252 EVGSSTHAFFGFNGTAGVWRIAAVNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLGTVKVKNELPSTFKAYRYQQHRWSC 331 (513)
Q Consensus 252 ~~~~~~~~~~~~~G~~~~~rr~~l~~~gg~~~~~~~ED~~l~~rl~~~G~~i~~~~~~~~~~~~p~~~~~~~~Qr~RW~~ 331 (513)
............+|+++++||++++ ++++....||.+++.++.++|+++.+.|++.+++..|.+.++.++|+.||..
T Consensus 170 ~~~~~~~~~~~~~g~~~~~rr~~~~---~~~~~~~~eD~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~ 246 (251)
T cd06439 170 RAESRLGSTVGANGAIYAIRRELFR---PLPADTINDDFVLPLRIARQGYRVVYEPDAVAYEEVAEDGSEEFRRRVRIAA 246 (251)
T ss_pred HHHHhcCCeeeecchHHHhHHHHhc---CCCcccchhHHHHHHHHHHcCCeEEeccccEEEEeCcccHHHHHHHHHHHHh
Confidence 1112223334467888899999998 6777778999999999999999999999999999999999999999999999
Q ss_pred chhH
Q 041333 332 GPAN 335 (513)
Q Consensus 332 G~~~ 335 (513)
|.+|
T Consensus 247 g~~~ 250 (251)
T cd06439 247 GNLQ 250 (251)
T ss_pred cccc
Confidence 9876
No 30
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.97 E-value=1.2e-29 Score=240.86 Aligned_cols=222 Identities=23% Similarity=0.301 Sum_probs=167.2
Q ss_pred EEEeccCChHHHHHHHHHHHcCCCCCCeeEEE-EEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCC-CCCCChhHHHH
Q 041333 101 VQIPMFNEREVYQLSIGAACGLSWPSDRLIIQ-VLDDSTDLTIKDMVELECQRWASKGINIKYEVRDN-RKGYKAGALRE 178 (513)
Q Consensus 101 IiIP~yne~~~l~~~l~sl~~q~yp~~~i~Ii-V~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~-~~g~Ka~aln~ 178 (513)
|+||+|||++.+++||+|+++|+||++..+|+ |+|+|+|+|.+.+ + .... ..+.+++++..+. .+.+|+.++|.
T Consensus 1 viip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~-~-~~~~--~~~~~v~~~~~~~~~~~g~~~a~n~ 76 (229)
T cd04192 1 VVIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQIL-E-FAAA--KPNFQLKILNNSRVSISGKKNALTT 76 (229)
T ss_pred CEEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHH-H-HHHh--CCCcceEEeeccCcccchhHHHHHH
Confidence 68999999999999999999999998544444 5555778777643 3 1111 3356777776653 23458999999
Q ss_pred HHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHhhhcccCC
Q 041333 179 GMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQEVGSSTH 258 (513)
Q Consensus 179 gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (513)
|++.+ ++|||+++|+|+.++|++|++++..+ .+++.++|++..... ...++.................. ....+
T Consensus 77 g~~~~---~~d~i~~~D~D~~~~~~~l~~l~~~~-~~~~~~~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 150 (229)
T cd04192 77 AIKAA---KGDWIVTTDADCVVPSNWLLTFVAFI-QKEQIGLVAGPVIYF-KGKSLLAKFQRLDWLSLLGLIAG-SFGLG 150 (229)
T ss_pred HHHHh---cCCEEEEECCCcccCHHHHHHHHHHh-hcCCCcEEeeeeeec-CCccHHHHHHHHHHHHHHHHHhh-HHHhc
Confidence 99999 99999999999999999999999988 456677777776654 33455555544333222211111 11122
Q ss_pred CccccccceeeeeHHHHHHcCCCCCC--CccchHHHHHHHhhCCC-eEEEe--cccccccccCcCHHHHHHHHHhhhhc
Q 041333 259 AFFGFNGTAGVWRIAAVNEAGGWKDR--TTVEDMDLAVRASLKGW-KFLYL--GTVKVKNELPSTFKAYRYQQHRWSCG 332 (513)
Q Consensus 259 ~~~~~~G~~~~~rr~~l~~~gg~~~~--~~~ED~~l~~rl~~~G~-~i~~~--~~~~~~~~~p~~~~~~~~Qr~RW~~G 332 (513)
.....+|+++++||++++++|||++. ..+||.+++.|+.++|+ ++.+. |++.++++.|.+++++.+||.||++|
T Consensus 151 ~~~~~~g~~~~~rr~~~~~~ggf~~~~~~~~eD~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~Rw~~g 229 (229)
T cd04192 151 KPFMCNGANMAYRKEAFFEVGGFEGNDHIASGDDELLLAKVASKYPKVAYLKNPEALVTTQPVTSWKELLNQRKRWASK 229 (229)
T ss_pred CccccccceEEEEHHHHHHhcCCccccccccCCHHHHHHHHHhCCCCEEEeeCcchheecCCchhHHHHHHHHHHhhcC
Confidence 22335699999999999999999875 47899999999999999 88887 55777889999999999999999986
No 31
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=99.97 E-value=1.3e-28 Score=263.44 Aligned_cols=309 Identities=20% Similarity=0.298 Sum_probs=210.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCccccc-CCCcc--ccccCCCCCCcEEEEEeccC---Ch-HHHHHHHHHHHcCC
Q 041333 51 MSLMLLIERVYMSIVILLLKLSGRSPETRYKF-QPMKE--DVELGNSSYPMVLVQIPMFN---ER-EVYQLSIGAACGLS 123 (513)
Q Consensus 51 ~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~--~~~~~~~~~P~VsIiIP~yn---e~-~~l~~~l~sl~~q~ 123 (513)
+|++.+++.+++.+.++.-...++.|.++... +.+.. +.+..++++|.|+|.|+|-+ |+ -.+.+|+-|+++.|
T Consensus 238 ~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~drL~~r~e~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~D 317 (1044)
T PLN02915 238 LWLISVICEIWFALSWILDQFPKWFPINRETYLDRLSMRFERDGEPNRLAPVDVFVSTVDPLKEPPIITANTVLSILAVD 317 (1044)
T ss_pred HHHHHHHHHHHHHHHHHHccCccccccccccCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhc
Confidence 36777777787777776666666666554322 11110 10111346999999999954 54 47889999999999
Q ss_pred CCCCeeEEEEEeC-CCchhHHHHHHHH---------HH-------------------------------------Hh---
Q 041333 124 WPSDRLIIQVLDD-STDLTIKDMVELE---------CQ-------------------------------------RW--- 153 (513)
Q Consensus 124 yp~~~i~IiV~Dd-s~D~t~~~l~~~~---------~~-------------------------------------~~--- 153 (513)
||.+++-++|.|| ++.-|.+.+.|.. |+ +|
T Consensus 318 YP~eKlscYvSDDGgS~LTf~AL~EAa~FAk~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~ 397 (1044)
T PLN02915 318 YPVDKVSCYVSDDGASMLLFDTLSETAEFARRWVPFCKKHNIEPRAPEFYFSQKIDYLKDKVQPTFVKERRAMKREYEEF 397 (1044)
T ss_pred ccccceeEEEecCCchHhHHHHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCccccccCchhHHHHHHHHHHHHHH
Confidence 9999999999998 4455555555410 00 00
Q ss_pred -------hc---------------------------------------------cCccEEEEEcCCCCC----CChhHHH
Q 041333 154 -------AS---------------------------------------------KGINIKYEVRDNRKG----YKAGALR 177 (513)
Q Consensus 154 -------~~---------------------------------------------~~~~v~~~~~~~~~g----~Ka~aln 177 (513)
.+ .-+++.|+.|++++| +||||+|
T Consensus 398 K~RIe~l~~~~~~~~~~~~~m~dgt~W~g~~~~dHp~IIqVll~~~~~~d~~g~~lP~LVYVSREKRP~~~Hh~KAGAMN 477 (1044)
T PLN02915 398 KVRINALVAKAQKKPEEGWVMQDGTPWPGNNTRDHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMN 477 (1044)
T ss_pred HHHHHHHHhhhccCCcccccccCCccCCCCCCCCCccceEEeecCCCCcccccCccceeEEEecccCCCCCcchhhhhhh
Confidence 00 001267888888776 6999999
Q ss_pred HHHHhccc-CCCcEEEEEcCCCCC-ChHHHHHHHHHHhcCC----CeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHh
Q 041333 178 EGMKRGYV-KSCDFVVIFDADFQP-ESDFLTRTIPFLVHNP----QLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQ 251 (513)
Q Consensus 178 ~gl~~a~~-~~~d~I~~lDaD~~~-~pd~L~~l~~~~~~~~----~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ 251 (513)
..++.+.. .+++||+.+|+|... +|+.+++.+.+| .|| +++.||.||++.|.+++-.- .......|.+..
T Consensus 478 aLlRVSavmTNaP~iLNlDCDmY~Nns~a~r~AMCf~-lD~~~g~~~afVQFPQrF~gidk~D~Y---~n~~~Vffdi~~ 553 (1044)
T PLN02915 478 ALVRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFL-MDPQLGKKLCYVQFPQRFDGIDRHDRY---ANRNVVFFDINM 553 (1044)
T ss_pred hHhhhhheeecCcEEEeeccccccCcchhhHhhceee-ecCCCCCeeEEEeCCcccCCCCCCCCc---CccceEEEeeec
Confidence 99998755 799999999999766 899999999988 455 78999999998886554110 001111222222
Q ss_pred hhcccCCCccccccceeeeeHHHHH-------------------------------------------------------
Q 041333 252 EVGSSTHAFFGFNGTAGVWRIAAVN------------------------------------------------------- 276 (513)
Q Consensus 252 ~~~~~~~~~~~~~G~~~~~rr~~l~------------------------------------------------------- 276 (513)
.+-+...++. +.|+++++||+++-
T Consensus 554 ~GldGlqGP~-YvGTGCffrR~aLYG~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (1044)
T PLN02915 554 KGLDGIQGPV-YVGTGCVFNRQALYGYDPPVSEKRPKMTCDCWPSWCCCCCGGGRRGKSKKSKKGKKGRRSLLGGLKKRK 632 (1044)
T ss_pred ccccccCCcc-cccCCceeeeeeecCcCCccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 2222222222 33444444433321
Q ss_pred --------------------------------------------------------------------------------
Q 041333 277 -------------------------------------------------------------------------------- 276 (513)
Q Consensus 277 -------------------------------------------------------------------------------- 276 (513)
T Consensus 633 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l 712 (1044)
T PLN02915 633 KKGGGGGSMMGKKYGRKKSQAVFDLEEIEEGLEGYDELEKSSLMSQKNFEKRFGQSPVFIASTLMEDGGLPEGTNPAALI 712 (1044)
T ss_pred ccccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhhhcCCcHHHHHHHHHhhcCCCCCCCcHHHH
Confidence
Q ss_pred -Hc-----------------CCCCCCCccchHHHHHHHhhCCCeEEEec-c-cccccccCcCHHHHHHHHHhhhhchhHH
Q 041333 277 -EA-----------------GGWKDRTTVEDMDLAVRASLKGWKFLYLG-T-VKVKNELPSTFKAYRYQQHRWSCGPANL 336 (513)
Q Consensus 277 -~~-----------------gg~~~~~~~ED~~l~~rl~~~G~~i~~~~-~-~~~~~~~p~~~~~~~~Qr~RW~~G~~~~ 336 (513)
++ -||..++++||+..+++++.+|||.+|+. + +...+.+|+++.+.+.||.||+.|.+|+
T Consensus 713 ~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rLH~rGWrSvY~~p~r~AF~GlAP~~L~d~L~Qr~RWA~G~lqI 792 (1044)
T PLN02915 713 KEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEI 792 (1044)
T ss_pred HHHHhccccCCCccCchhHhhCccccccccHHHHHHHHHccCCcEEeeCCCcHHhcCcCCCCHHHHHHHHHHHhhhHHHH
Confidence 10 04555668999999999999999999994 3 3446999999999999999999999999
Q ss_pred HHhhcccccc--ccccCcchhhHHHHHHHH
Q 041333 337 FRKMVMEIVR--NKKVSLWKKVHVIYSFFF 364 (513)
Q Consensus 337 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 364 (513)
+.+....++. .+++++.|++.++...++
T Consensus 793 f~sr~~Pl~~g~~~~L~l~QRL~Yl~~~~y 822 (1044)
T PLN02915 793 FMSRHCPLWYAYGGKLKWLERLAYINTIVY 822 (1044)
T ss_pred HHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence 9865333442 467999999998766554
No 32
>PLN02436 cellulose synthase A
Probab=99.97 E-value=1.3e-28 Score=263.07 Aligned_cols=310 Identities=20% Similarity=0.273 Sum_probs=216.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCccccc-CCCcc--ccccCCCCCCcEEEEEeccC---Ch-HHHHHHHHHHHcC
Q 041333 50 IMSLMLLIERVYMSIVILLLKLSGRSPETRYKF-QPMKE--DVELGNSSYPMVLVQIPMFN---ER-EVYQLSIGAACGL 122 (513)
Q Consensus 50 ~~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~--~~~~~~~~~P~VsIiIP~yn---e~-~~l~~~l~sl~~q 122 (513)
.+|++.+++.+++.+.++.-...++.|.++... +.+.. +.+..++++|.|+|.|+|-+ |+ -.+.+|+-|+++.
T Consensus 315 ~~Wl~s~~cE~WFaf~Wll~Q~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~ 394 (1094)
T PLN02436 315 GLWLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTVLSILAV 394 (1094)
T ss_pred HHHHHHHHHHHHHHHHHHHccCcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhh
Confidence 346777788887777777766666666554322 11111 11112467999999999954 54 4788999999999
Q ss_pred CCCCCeeEEEEEeC-CCchhHHHHHHH-----------------------------------------------------
Q 041333 123 SWPSDRLIIQVLDD-STDLTIKDMVEL----------------------------------------------------- 148 (513)
Q Consensus 123 ~yp~~~i~IiV~Dd-s~D~t~~~l~~~----------------------------------------------------- 148 (513)
|||.+++-++|.|| ++.-|.+.+.|.
T Consensus 395 DYP~eKlscYvSDDGgS~LTf~AL~EAa~FAk~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe 474 (1094)
T PLN02436 395 DYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFSIEPRAPEWYFSQKMDYLKNKVHPAFVRERRAMKREYEE 474 (1094)
T ss_pred cccccceEEEEecCCchHHHHHHHHHHHHHHHhhcccccccCCCcCCHHHHhhccCCcccccCChhHHHHHHHHHHHHHH
Confidence 99999999999998 444455544440
Q ss_pred H---HHHhhc---------------------------------------------cCccEEEEEcCCCCC----CChhHH
Q 041333 149 E---CQRWAS---------------------------------------------KGINIKYEVRDNRKG----YKAGAL 176 (513)
Q Consensus 149 ~---~~~~~~---------------------------------------------~~~~v~~~~~~~~~g----~Ka~al 176 (513)
+ .+...+ .-+++.|+.|++++| +||||+
T Consensus 475 ~K~RIe~l~~~~~~vp~~~~~m~dgt~W~g~~~~dHp~IIqVll~~~~~~d~~g~~LP~LVYVSREKRPg~~Hh~KAGAM 554 (1094)
T PLN02436 475 FKVKINALVATAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGHSGVRDVEGNELPRLVYVSREKRPGFDHHKKAGAM 554 (1094)
T ss_pred HHHHHHHHHhhcccCchhhhhhccCccCCCCCCCCCccceEEEecCCCCcccccccCceEEEEecccCCCCCcchhhhhh
Confidence 0 000000 001267888888776 699999
Q ss_pred HHHHHhccc-CCCcEEEEEcCCC-CCChHHHHHHHHHHhcCC----CeeEEEeeEEEecCCCchHHHHHHhhhcchhhHH
Q 041333 177 REGMKRGYV-KSCDFVVIFDADF-QPESDFLTRTIPFLVHNP----QLALVQARWEFVNADECLMTRLQEMSLDYHFTVE 250 (513)
Q Consensus 177 n~gl~~a~~-~~~d~I~~lDaD~-~~~pd~L~~l~~~~~~~~----~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~ 250 (513)
|..++.+.. .+++||+.+|+|. ..+|+.+++.+.+| .|| +++.||.||++.|.+++-.- .......|.+.
T Consensus 555 NaLlRVSavmTNaP~ILNLDCDmYiNns~a~r~AMCfl-lD~~~g~~~afVQFPQrF~gi~k~D~Y---~n~~~vffdi~ 630 (1094)
T PLN02436 555 NSLIRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFM-MDPQSGKKICYVQFPQRFDGIDRHDRY---SNRNVVFFDIN 630 (1094)
T ss_pred hhhhhhheeecCCceEEecccccccCchHHHHHhhhhh-cCCccCCeeEEEcCCcccCCCCCCCcc---cccceEeeecc
Confidence 999998755 7999999999997 55899999999998 466 89999999999887654211 11122233333
Q ss_pred hhhcccCCCccccccceeeeeHHHHHHc----------------------------------------------------
Q 041333 251 QEVGSSTHAFFGFNGTAGVWRIAAVNEA---------------------------------------------------- 278 (513)
Q Consensus 251 ~~~~~~~~~~~~~~G~~~~~rr~~l~~~---------------------------------------------------- 278 (513)
..+-+...++. +.|+++++||+++-..
T Consensus 631 ~~GlDGlqGP~-YvGTGC~frR~aLYG~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (1094)
T PLN02436 631 MKGLDGIQGPI-YVGTGCVFRRQALYGYDAPKKKKPPGKTCNCWPKWCCLCCGSRKKKKKKKSKEKKKKKNREASKQIHA 709 (1094)
T ss_pred ccccccCCCcc-ccccCceeeeeeeeccCCcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 34444444443 5566666666554210
Q ss_pred ------------------------------------------C---------------------------------CCCC
Q 041333 279 ------------------------------------------G---------------------------------GWKD 283 (513)
Q Consensus 279 ------------------------------------------g---------------------------------g~~~ 283 (513)
| ||..
T Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGwiY 789 (1094)
T PLN02436 710 LENIEEGIEGSNNEKSSETPQLKLEKKFGQSPVFVASTLLENGGVPRNASPASLLREAIQVISCGYEDKTEWGKEIGWIY 789 (1094)
T ss_pred ccccccccccccchhhhhhhhhhHHhhhcccHHHHHHHHHhhcCCCCCCCcHHHHHHHHHhhcCCCcccChhhHhhCeec
Confidence 0 3444
Q ss_pred CCccchHHHHHHHhhCCCeEEEe-cccc-cccccCcCHHHHHHHHHhhhhchhHHHHhhccccc--cccccCcchhhHHH
Q 041333 284 RTTVEDMDLAVRASLKGWKFLYL-GTVK-VKNELPSTFKAYRYQQHRWSCGPANLFRKMVMEIV--RNKKVSLWKKVHVI 359 (513)
Q Consensus 284 ~~~~ED~~l~~rl~~~G~~i~~~-~~~~-~~~~~p~~~~~~~~Qr~RW~~G~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 359 (513)
++++||+..+++++.+|||.+|+ |+.. ..+.+|+++.+++.||.||+.|.+|++......++ ..+++++.|++.++
T Consensus 790 GSvTEDv~TG~rLH~rGWrSvY~~P~r~AF~GlAP~~L~d~L~Qr~RWA~G~lQIffsr~nPl~~g~~~~L~l~QRL~Yl 869 (1094)
T PLN02436 790 GSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYI 869 (1094)
T ss_pred cceecHHHHHHHHHcCCCceEeCCCCchhhcCcCCCCHHHHHHHHHHHhhcceeeeeccCCcchhcccccCCHHHHHHHH
Confidence 55799999999999999999998 5443 47999999999999999999999999865323333 24579999999987
Q ss_pred HHHHH
Q 041333 360 YSFFF 364 (513)
Q Consensus 360 ~~~~~ 364 (513)
...++
T Consensus 870 ~~~ly 874 (1094)
T PLN02436 870 NSVVY 874 (1094)
T ss_pred HHHHH
Confidence 66554
No 33
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.96 E-value=4.7e-28 Score=232.92 Aligned_cols=230 Identities=20% Similarity=0.236 Sum_probs=171.8
Q ss_pred cEEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEE-EEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHH
Q 041333 98 MVLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQ-VLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGAL 176 (513)
Q Consensus 98 ~VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~Ii-V~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~al 176 (513)
++||+||+|||++.+.++|+|+.+|+||....+|+ |+|+|+|++.+.+ +. +.++...++++..+ +.| ++.|+
T Consensus 1 ~~sIiip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~-~~----~~~~~~~v~~i~~~-~~~-~~~a~ 73 (249)
T cd02525 1 FVSIIIPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIV-QE----YAAKDPRIRLIDNP-KRI-QSAGL 73 (249)
T ss_pred CEEEEEEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHH-HH----HHhcCCeEEEEeCC-CCC-chHHH
Confidence 48999999999999999999999999973333343 5555777776643 33 32334567777654 334 78999
Q ss_pred HHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHhh--hc
Q 041333 177 REGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQE--VG 254 (513)
Q Consensus 177 n~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~--~~ 254 (513)
|.|++.+ ++|+++++|+|+.++|++++++++.+ .+++.+++++.....+.+. ..... .......+..... ..
T Consensus 74 N~g~~~a---~~d~v~~lD~D~~~~~~~l~~~~~~~-~~~~~~~v~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~ 147 (249)
T cd02525 74 NIGIRNS---RGDIIIRVDAHAVYPKDYILELVEAL-KRTGADNVGGPMETIGESK-FQKAI-AVAQSSPLGSGGSAYRG 147 (249)
T ss_pred HHHHHHh---CCCEEEEECCCccCCHHHHHHHHHHH-hcCCCCEEecceecCCCCh-HHHHH-HHHhhchhccCCccccc
Confidence 9999999 99999999999999999999999988 5678888887765443322 11111 1111111110000 00
Q ss_pred ccCCCccccccceeeeeHHHHHHcCCCCCCC-ccchHHHHHHHhhCCCeEEEecccccccccCcCHHHHHHHHHhhhhch
Q 041333 255 SSTHAFFGFNGTAGVWRIAAVNEAGGWKDRT-TVEDMDLAVRASLKGWKFLYLGTVKVKNELPSTFKAYRYQQHRWSCGP 333 (513)
Q Consensus 255 ~~~~~~~~~~G~~~~~rr~~l~~~gg~~~~~-~~ED~~l~~rl~~~G~~i~~~~~~~~~~~~p~~~~~~~~Qr~RW~~G~ 333 (513)
..........|+++++||++++++|+|++.. .+||.+++.|+.++|+++.+.|++.+.+..+.+++++.+|+.||.+|.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~eD~~l~~r~~~~G~~~~~~~~~~~~~~~~~s~~~~~~~~~r~~~~~ 227 (249)
T cd02525 148 GAVKIGYVDTVHHGAYRREVFEKVGGFDESLVRNEDAELNYRLRKAGYKIWLSPDIRVYYYPRSTLKKLARQYFRYGKWR 227 (249)
T ss_pred cccccccccccccceEEHHHHHHhCCCCcccCccchhHHHHHHHHcCcEEEEcCCeEEEEcCCCCHHHHHHHHHHHhhhh
Confidence 1111022356888999999999999998864 679999999999999999999999999999999999999999999999
Q ss_pred hHHHHhh
Q 041333 334 ANLFRKM 340 (513)
Q Consensus 334 ~~~~~~~ 340 (513)
.+.++++
T Consensus 228 ~~~~~~~ 234 (249)
T cd02525 228 ARTLRKH 234 (249)
T ss_pred HHHHHhC
Confidence 9998765
No 34
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=99.96 E-value=8.3e-28 Score=246.47 Aligned_cols=241 Identities=17% Similarity=0.259 Sum_probs=187.1
Q ss_pred CCCcEEEEEeccCCh-HHHHHHHHHHHcCCCCCC-eeEEEEEeC-----CCc-hhHHHHHHHHHHH--------------
Q 041333 95 SYPMVLVQIPMFNER-EVYQLSIGAACGLSWPSD-RLIIQVLDD-----STD-LTIKDMVELECQR-------------- 152 (513)
Q Consensus 95 ~~P~VsIiIP~yne~-~~l~~~l~sl~~q~yp~~-~i~IiV~Dd-----s~D-~t~~~l~~~~~~~-------------- 152 (513)
..+.+-.+||||||. +.+++||+|+..++||+. +++++|+|| +.| .|.+.+.+.. .+
T Consensus 23 ~~~~~i~~v~cy~E~~~~l~~tldsl~~~~y~~~~k~~~vi~DG~i~g~g~~~~tp~~~l~~~-~~~~~~~~~~~~~~~~ 101 (527)
T PF03142_consen 23 PDKFVICLVPCYSEGEEELRTTLDSLATTDYDDSRKLIFVICDGMIKGSGNDKTTPEIVLDIL-GDFVDPPEDPEPLSYV 101 (527)
T ss_pred CCceEEEEEccccCChHHHHHHHHHHHhcCCCCcccEEEEEcCcEEecCCCCCChHHHHHHhh-cccCCCcCCCCCcceE
Confidence 345677899999997 899999999999999976 677778997 344 4455444422 20
Q ss_pred ------------------hhccC-----------ccEEEEE-----------cCCCCCCChhHHHHHHHhc---------
Q 041333 153 ------------------WASKG-----------INIKYEV-----------RDNRKGYKAGALREGMKRG--------- 183 (513)
Q Consensus 153 ------------------~~~~~-----------~~v~~~~-----------~~~~~g~Ka~aln~gl~~a--------- 183 (513)
|...+ .+..++. ++.|+| |....-..+...
T Consensus 102 ~~~~g~~~~n~~~vy~g~y~~~~~~~~~~~~~~~vp~~~vvk~g~~~e~~~~k~~NrG-KRDsq~~~~~fl~~~~~~~~~ 180 (527)
T PF03142_consen 102 SLGEGSKQHNMAKVYSGFYEYDGDSHVPPEKQQRVPYIVVVKCGTPSERSSPKPGNRG-KRDSQILLMSFLNKVHFNNPM 180 (527)
T ss_pred EeccCchhhcCEEEEEEEEecCCccccccccccccCEEEEEEcCChHHhcccccccCC-chHHHHHHHHHHHHHhcCCCC
Confidence 00011 1222222 234444 766632111110
Q ss_pred -----------------ccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcch
Q 041333 184 -----------------YVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYH 246 (513)
Q Consensus 184 -----------------~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~ 246 (513)
..+..||++.+|||+.+.||++.+++..+++||++++|+|.....|...+|++..|.+++...
T Consensus 181 ~~~~~e~~~~i~~~~g~~~~~~~~il~~DaDt~~~p~~~~~lv~~m~~d~~i~gvCG~t~i~n~~~s~~t~~Q~fEY~is 260 (527)
T PF03142_consen 181 TPLELELFHQIWNIIGVDPDFYEYILMVDADTKFDPDSVNRLVDAMERDPKIGGVCGETRIDNKGQSWWTMYQVFEYAIS 260 (527)
T ss_pred chHHHHHHHHHHHHhccCccceEEEEEecCCceEcHHHHHHHHHHHcCCCCeEEEeceeEEcCCCCCHhhheeccchhHH
Confidence 113579999999999999999999999999999999999999999998999999999999988
Q ss_pred hhHHhhhcccCCCccccccceeeeeHHHHHHcC--------------CCCC---------C--CccchHHHHHHHhhC--
Q 041333 247 FTVEQEVGSSTHAFFGFNGTAGVWRIAAVNEAG--------------GWKD---------R--TTVEDMDLAVRASLK-- 299 (513)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~g--------------g~~~---------~--~~~ED~~l~~rl~~~-- 299 (513)
+...+...+..+.+.|++|++.++|-++.+.-. +|.+ . .++||..++..+.++
T Consensus 261 h~l~Ka~Es~fG~VtCLPGcfsmyR~~a~~~~~~~~~p~l~~~~i~~~Y~~~~~dtlh~~nl~~lGEDR~LttLlLk~~~ 340 (527)
T PF03142_consen 261 HHLQKAFESVFGSVTCLPGCFSMYRISALMDGDGYWVPLLISPDIIEKYSENPVDTLHQKNLLDLGEDRWLTTLLLKQFP 340 (527)
T ss_pred HHHHHHHHHHhCceeecCCcceeeeeehhccccccccccccchHHHHHHhhccchHHHHHhhhhcchhHHHHHHHHhhCC
Confidence 888888888999999999999999998876511 2211 1 289999999988887
Q ss_pred CCeEEEecccccccccCcCHHHHHHHHHhhhhchhHHH
Q 041333 300 GWKFLYLGTVKVKNELPSTFKAYRYQQHRWSCGPANLF 337 (513)
Q Consensus 300 G~~i~~~~~~~~~~~~p~~~~~~~~Qr~RW~~G~~~~~ 337 (513)
|||+.|+|++.+++.+|++++.+.+||+||.+|++..+
T Consensus 341 ~~k~~y~~~A~a~T~aP~t~~vflsQRRRWinSTi~Nl 378 (527)
T PF03142_consen 341 GYKTEYVPSAVAYTDAPETFSVFLSQRRRWINSTIHNL 378 (527)
T ss_pred CceEEEcccccccccCCccHHHHHHHhhhccchhHhhH
Confidence 89999999999999999999999999999999998654
No 35
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.94 E-value=3.3e-26 Score=226.66 Aligned_cols=208 Identities=17% Similarity=0.164 Sum_probs=148.2
Q ss_pred EEEEeccCCh-HHHHHHHHHHHcCCCCCC--eeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHH
Q 041333 100 LVQIPMFNER-EVYQLSIGAACGLSWPSD--RLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGAL 176 (513)
Q Consensus 100 sIiIP~yne~-~~l~~~l~sl~~q~yp~~--~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~al 176 (513)
|||||+|||+ +.+.+||+|+.+|+++.. |+ |+|+|+|+|+|.+.+.+.... ....+++++..+++.| .+.|+
T Consensus 1 SIIIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EI-IvVDd~S~d~t~~~~~~~~~~---~~~~~v~vi~~~~n~G-~~~a~ 75 (299)
T cd02510 1 SVIIIFHNEALSTLLRTVHSVINRTPPELLKEI-ILVDDFSDKPELKLLLEEYYK---KYLPKVKVLRLKKREG-LIRAR 75 (299)
T ss_pred CEEEEEecCcHHHHHHHHHHHHhcCchhcCCEE-EEEECCCCchHHHHHHHHHHh---hcCCcEEEEEcCCCCC-HHHHH
Confidence 6999999999 999999999999998754 43 336677999998866442211 2346789998877766 89999
Q ss_pred HHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHH----HH---Hhhhcchhh-
Q 041333 177 REGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTR----LQ---EMSLDYHFT- 248 (513)
Q Consensus 177 n~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~----~~---~~~~~~~~~- 248 (513)
|.|+++| +||||+++|+|+.++|+||++++..+.++|.. ++++.....+.+...... .. ...+...+.
T Consensus 76 N~g~~~A---~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~-~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (299)
T cd02510 76 IAGARAA---TGDVLVFLDSHCEVNVGWLEPLLARIAENRKT-VVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLP 151 (299)
T ss_pred HHHHHHc---cCCEEEEEeCCcccCccHHHHHHHHHHhCCCe-EEEeeeccccCCCeeEecCCCceeEEecccceecccc
Confidence 9999999 99999999999999999999999999766654 555443222211000000 00 000000000
Q ss_pred H--H---hhhcccCCCccccccceeeeeHHHHHHcCCCCCCC---ccchHHHHHHHhhCCCeEEEecccccccccC
Q 041333 249 V--E---QEVGSSTHAFFGFNGTAGVWRIAAVNEAGGWKDRT---TVEDMDLAVRASLKGWKFLYLGTVKVKNELP 316 (513)
Q Consensus 249 ~--~---~~~~~~~~~~~~~~G~~~~~rr~~l~~~gg~~~~~---~~ED~~l~~rl~~~G~~i~~~~~~~~~~~~p 316 (513)
. . ............++|+++++||++++++|||++.. ..||.|++.|+.++|+++.++|++.+.|...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p~a~v~H~~~ 227 (299)
T cd02510 152 LPEEERRRESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPCSRVGHIFR 227 (299)
T ss_pred CCHHHhhhcCCCCCccCccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHcCCeEEEeeccEEEEecc
Confidence 0 0 00011112233467999999999999999999976 3599999999999999999999998876444
No 36
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.94 E-value=2.5e-26 Score=213.89 Aligned_cols=197 Identities=19% Similarity=0.285 Sum_probs=148.9
Q ss_pred CcEEEEEeccCCh-HHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhH
Q 041333 97 PMVLVQIPMFNER-EVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGA 175 (513)
Q Consensus 97 P~VsIiIP~yne~-~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~a 175 (513)
|++||+||+|||+ +.+++||+|+.+|++++.+++| |+|+|+|++.+.+.+... .+..+++++..+.+.| ++.|
T Consensus 1 p~vsiii~~~n~~~~~l~~~l~sl~~q~~~~~eiiv-vd~gs~d~~~~~~~~~~~----~~~~~~~~~~~~~~~g-~~~a 74 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRAQTYPNWELCI-ADDASTDPEVKRVLKKYA----AQDPRIKVVFREENGG-ISAA 74 (202)
T ss_pred CeEEEEEecccCcHHHHHHHHHHHHhCcCCCeEEEE-EeCCCCChHHHHHHHHHH----hcCCCEEEEEcccCCC-HHHH
Confidence 6799999999999 9999999999999998766544 667788888776655332 3345677777766655 8999
Q ss_pred HHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHhhhcc
Q 041333 176 LREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQEVGS 255 (513)
Q Consensus 176 ln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (513)
+|.|++.+ ++||++++|+|+.++|+++++++..++++|++++|.+.......+....... ..........
T Consensus 75 ~n~g~~~a---~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~~~~~~~~~~--- 144 (202)
T cd04184 75 TNSALELA---TGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKIDEGGKRSEPF----FKPDWSPDLL--- 144 (202)
T ss_pred HHHHHHhh---cCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhccCCCCEeccc----cCCCCCHHHh---
Confidence 99999999 9999999999999999999999999877899998877554322211111100 0000000000
Q ss_pred cCCCccccccceeeeeHHHHHHcCCCCCCC-ccchHHHHHHHhhCCCeEEEecccccc
Q 041333 256 STHAFFGFNGTAGVWRIAAVNEAGGWKDRT-TVEDMDLAVRASLKGWKFLYLGTVKVK 312 (513)
Q Consensus 256 ~~~~~~~~~G~~~~~rr~~l~~~gg~~~~~-~~ED~~l~~rl~~~G~~i~~~~~~~~~ 312 (513)
. ...+.++++++||++++++|||++.. .+||+|++.|+.++|+++.++|++...
T Consensus 145 --~-~~~~~~~~~~~~r~~~~~iggf~~~~~~~eD~~l~~rl~~~g~~~~~~~~~~~~ 199 (202)
T cd04184 145 --L-SQNYIGHLLVYRRSLVRQVGGFREGFEGAQDYDLVLRVSEHTDRIAHIPRVLYH 199 (202)
T ss_pred --h-hcCCccceEeEEHHHHHHhCCCCcCcccchhHHHHHHHHhccceEEEccHhhhh
Confidence 0 01244777899999999999998864 789999999999999999999987653
No 37
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=99.94 E-value=1.1e-25 Score=234.27 Aligned_cols=199 Identities=21% Similarity=0.356 Sum_probs=152.2
Q ss_pred EEEEEcCCCCC----CChhHHHHHHHhccc-CCCcEEEEEcCCC-CCChHHHHHHHHHHhcCCC----eeEEEeeEEEec
Q 041333 160 IKYEVRDNRKG----YKAGALREGMKRGYV-KSCDFVVIFDADF-QPESDFLTRTIPFLVHNPQ----LALVQARWEFVN 229 (513)
Q Consensus 160 v~~~~~~~~~g----~Ka~aln~gl~~a~~-~~~d~I~~lDaD~-~~~pd~L~~l~~~~~~~~~----v~~V~~~~~~~n 229 (513)
+.|+.|++++| +||||+|..++.+.. .+++||+.+|+|. ..+|+.+++.+.+| .||+ ++.||.++.+.|
T Consensus 168 lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~-~d~~~g~~~~~vQfpq~f~~ 246 (720)
T PF03552_consen 168 LVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFF-MDPKIGKKIAFVQFPQRFDG 246 (720)
T ss_pred EEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhh-ccCCCCCeeEEEeCCceeCC
Confidence 78888888766 699999999987654 7999999999997 55899999999998 5665 999999999988
Q ss_pred CCCchHHHHHHhhhcchhhHHhhhcccCCCccccccceeeeeHHHHHHcC------------------------------
Q 041333 230 ADECLMTRLQEMSLDYHFTVEQEVGSSTHAFFGFNGTAGVWRIAAVNEAG------------------------------ 279 (513)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~g------------------------------ 279 (513)
.+++-.- .......+.....+-+..+++. +.|+++++||+++-..+
T Consensus 247 i~~~d~y---~~~~~~~~~~~~~g~dG~~gp~-y~Gtgc~~rR~al~g~~~~~~~~~~~~~~~~~~~c~~~~k~~~~~~~ 322 (720)
T PF03552_consen 247 IDKNDRY---GNQNRVFFDINMRGLDGLQGPF-YVGTGCFFRREALYGFDPPRYEKDPEKTCCCCSCCFGRRKKKKSKKK 322 (720)
T ss_pred CCcCCCC---CccceeeeeccccccccCCCce-eeecCcceechhhhCCCCCchhcccCcceeeeecccCCccccccccc
Confidence 7654211 1122233444444555555544 77888888888874321
Q ss_pred --------------------------------------------------------------------------------
Q 041333 280 -------------------------------------------------------------------------------- 279 (513)
Q Consensus 280 -------------------------------------------------------------------------------- 279 (513)
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~~~L~EA~~V~s 402 (720)
T PF03552_consen 323 PKKRASKRRESSSPIFALEDIEEGAEGSDEERSSLMSQKELEKKFGQSPEFIASTLMAQGGVPRSPSPASLLEEAIHVAS 402 (720)
T ss_pred chhccccccccccccccccccccccccchhhhhhcchhHHHHHHhcCCHHHHHHHHHHhcCCCCCCChHHHHHHHHHHhc
Confidence
Q ss_pred -------------CCCCCCccchHHHHHHHhhCCCeEEEecc--cccccccCcCHHHHHHHHHhhhhchhHHHHhhcccc
Q 041333 280 -------------GWKDRTTVEDMDLAVRASLKGWKFLYLGT--VKVKNELPSTFKAYRYQQHRWSCGPANLFRKMVMEI 344 (513)
Q Consensus 280 -------------g~~~~~~~ED~~l~~rl~~~G~~i~~~~~--~~~~~~~p~~~~~~~~Qr~RW~~G~~~~~~~~~~~~ 344 (513)
||-..+++||+..++++|.+|||.+|+.. +...+.+|.++.+.+.|+.||+.|.+|++......+
T Consensus 403 C~YE~~T~WGkevGwiYGSvtEDv~TG~rmH~rGWrSvYc~p~r~AF~G~AP~nL~d~L~Q~~RWA~GslEI~fSr~~Pl 482 (720)
T PF03552_consen 403 CGYEDKTEWGKEVGWIYGSVTEDVLTGFRMHCRGWRSVYCNPKRPAFLGSAPINLSDRLHQVKRWATGSLEIFFSRHCPL 482 (720)
T ss_pred CCccccCCcccccceEEEecccccccceeEeeCceeeEEeccccchhcccCCCChhhhceeeeeEeeeeEeeehhcCCch
Confidence 44445588999999999999999999965 345789999999999999999999999986433444
Q ss_pred ccc--cccCcchhhHHHHHHH
Q 041333 345 VRN--KKVSLWKKVHVIYSFF 363 (513)
Q Consensus 345 ~~~--~~~~~~~~~~~~~~~~ 363 (513)
+.. +++++.+++.++...+
T Consensus 483 ~~g~~~rL~~lQrLaY~~~~~ 503 (720)
T PF03552_consen 483 WYGYGGRLKFLQRLAYLNYML 503 (720)
T ss_pred hccCCCCCcHHHHHHHHHHhh
Confidence 443 6788999988765443
No 38
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.94 E-value=1.2e-25 Score=209.13 Aligned_cols=197 Identities=21% Similarity=0.318 Sum_probs=148.3
Q ss_pred EEEEeccCCh--HHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHH
Q 041333 100 LVQIPMFNER--EVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALR 177 (513)
Q Consensus 100 sIiIP~yne~--~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln 177 (513)
||+||+||++ +.+++||+|+.+|+|++.+++| |+|+|++++...++++..++ .+++++..+++.| +++|+|
T Consensus 1 sviip~~n~~~~~~l~~~l~Sl~~q~~~~~eiii-vdd~ss~d~t~~~~~~~~~~-----~~i~~i~~~~n~G-~~~a~N 73 (201)
T cd04195 1 SVLMSVYIKEKPEFLREALESILKQTLPPDEVVL-VKDGPVTQSLNEVLEEFKRK-----LPLKVVPLEKNRG-LGKALN 73 (201)
T ss_pred CEEEEccccchHHHHHHHHHHHHhcCCCCcEEEE-EECCCCchhHHHHHHHHHhc-----CCeEEEEcCcccc-HHHHHH
Confidence 6999999997 5999999999999999766544 77777555555565544332 2488887777766 899999
Q ss_pred HHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHhhhcccC
Q 041333 178 EGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQEVGSST 257 (513)
Q Consensus 178 ~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (513)
.|++.+ +||||+++|+|+.++|+++++++..++++|+++++++.....+.+........ .. ..........
T Consensus 74 ~g~~~a---~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~---- 144 (201)
T cd04195 74 EGLKHC---TYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIGKRR-LP-TSHDDILKFA---- 144 (201)
T ss_pred HHHHhc---CCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeecccc-CC-CCHHHHHHHh----
Confidence 999999 99999999999999999999999999888999999998776544332111000 00 0000000000
Q ss_pred CCccccccceeeeeHHHHHHcCCCCCCCccchHHHHHHHhhCCCeEEEecccccc
Q 041333 258 HAFFGFNGTAGVWRIAAVNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLGTVKVK 312 (513)
Q Consensus 258 ~~~~~~~G~~~~~rr~~l~~~gg~~~~~~~ED~~l~~rl~~~G~~i~~~~~~~~~ 312 (513)
.....+++.++++||++++++|||++....||++++.|+..+|+++.++|++.++
T Consensus 145 ~~~~~~~~~~~~~rr~~~~~~g~~~~~~~~eD~~~~~r~~~~g~~~~~~~~~~~~ 199 (201)
T cd04195 145 RRRSPFNHPTVMFRKSKVLAVGGYQDLPLVEDYALWARMLANGARFANLPEILVK 199 (201)
T ss_pred ccCCCCCChHHhhhHHHHHHcCCcCCCCCchHHHHHHHHHHcCCceecccHHHhh
Confidence 0111245677899999999999999888999999999999999999999987764
No 39
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.94 E-value=8.7e-26 Score=207.14 Aligned_cols=180 Identities=23% Similarity=0.254 Sum_probs=137.4
Q ss_pred EEEeccCChHHHHHHHHHHHcCCCCCCeeEEE-EEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHH
Q 041333 101 VQIPMFNEREVYQLSIGAACGLSWPSDRLIIQ-VLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREG 179 (513)
Q Consensus 101 IiIP~yne~~~l~~~l~sl~~q~yp~~~i~Ii-V~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~g 179 (513)
|+||+|||++.+.+||+++.+|+||....+|+ |+|+|+|+|.+.+.+ + +..+... ...++++|+.|+|.|
T Consensus 1 VvIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~-----~---~~~~~~~-~~~~~~gk~~aln~g 71 (183)
T cd06438 1 ILIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARA-----A---GATVLER-HDPERRGKGYALDFG 71 (183)
T ss_pred CEEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHH-----c---CCeEEEe-CCCCCCCHHHHHHHH
Confidence 68999999999999999999999975444443 666788988874422 1 2233332 233445599999999
Q ss_pred HHhcc--cCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHhhhcccC
Q 041333 180 MKRGY--VKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQEVGSST 257 (513)
Q Consensus 180 l~~a~--~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (513)
++.+. ..++|+++++|+|+.++|+++.+++..+.+ +.++|++.....+++.++..+.+...+.......+......
T Consensus 72 ~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~--~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (183)
T cd06438 72 FRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAA--GARVVQAYYNSKNPDDSWITRLYAFAFLVFNRLRPLGRSNL 149 (183)
T ss_pred HHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhh--CCCeeEEEEeeeCCccCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99872 125999999999999999999999999954 34678888877776668888877766555544444444455
Q ss_pred CCccccccceeeeeHHHHHHcCCCCCCCccchHHH
Q 041333 258 HAFFGFNGTAGVWRIAAVNEAGGWKDRTTVEDMDL 292 (513)
Q Consensus 258 ~~~~~~~G~~~~~rr~~l~~~gg~~~~~~~ED~~l 292 (513)
+....+.|+++++||+++++ |||++.+++||+++
T Consensus 150 ~~~~~~~G~~~~~rr~~l~~-~g~~~~~l~ED~~~ 183 (183)
T cd06438 150 GLSCQLGGTGMCFPWAVLRQ-APWAAHSLTEDLEF 183 (183)
T ss_pred CCCeeecCchhhhHHHHHHh-CCCCCCCcccccCC
Confidence 55556789999999999999 99999999999875
No 40
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.93 E-value=5.1e-25 Score=203.44 Aligned_cols=179 Identities=22% Similarity=0.274 Sum_probs=142.6
Q ss_pred EEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcC--CCCCCChhHHHH
Q 041333 101 VQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRD--NRKGYKAGALRE 178 (513)
Q Consensus 101 IiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~--~~~g~Ka~aln~ 178 (513)
|+||+|||++.+.+||+|+.+|+ |+.+++| |+|+|+|+|.+.+ + . + ....+++++.++ +.++||++|+|.
T Consensus 1 ViIp~~Ne~~~l~~~l~sl~~~~-~~~eIiv-vdd~S~D~t~~~~-~-~-~---~~~~~v~~i~~~~~~~~~Gk~~aln~ 72 (191)
T cd06436 1 VLVPCLNEEAVIQRTLASLLRNK-PNFLVLV-IDDASDDDTAGIV-R-L-A---ITDSRVHLLRRHLPNARTGKGDALNA 72 (191)
T ss_pred CEEeccccHHHHHHHHHHHHhCC-CCeEEEE-EECCCCcCHHHHH-h-h-e---ecCCcEEEEeccCCcCCCCHHHHHHH
Confidence 69999999999999999999998 7655433 6677888888754 3 1 1 223567777653 234459999999
Q ss_pred HHHhccc--------CCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcchhhHH
Q 041333 179 GMKRGYV--------KSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYHFTVE 250 (513)
Q Consensus 179 gl~~a~~--------~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~ 250 (513)
|++.+.. .++|+|+++|+|+.++|++|+++...+ ++|+++++++.....|.+.++.++++.+++...+...
T Consensus 73 g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~-~~~~v~~v~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ 151 (191)
T cd06436 73 AYDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYF-SDPRVAGTQSRVRMYNRHKNLLTILQDLEFFIIIAAT 151 (191)
T ss_pred HHHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhh-cCCceEEEeeeEEEecCCCCHHHHHHHHHHHHHHHHH
Confidence 9998721 124899999999999999999988877 6899999999999999888999999998888776666
Q ss_pred hhhcccCCCccccccceeeeeHHHHHHcCCCCCC--Cccch
Q 041333 251 QEVGSSTHAFFGFNGTAGVWRIAAVNEAGGWKDR--TTVED 289 (513)
Q Consensus 251 ~~~~~~~~~~~~~~G~~~~~rr~~l~~~gg~~~~--~~~ED 289 (513)
+..+...+. ..+.|++.++||++++++|||++. +++||
T Consensus 152 ~~~~~~~~~-~~~~G~~~~~r~~~l~~vgg~~~~~~~~~ED 191 (191)
T cd06436 152 QSLRALTGT-VGLGGNGQFMRLSALDGLIGEEPWSDSLLED 191 (191)
T ss_pred HHHHHhcCc-EEECCeeEEEeHHHHHHhhcCCCCchhhcCC
Confidence 666655554 447899999999999999777664 78888
No 41
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.93 E-value=9.2e-22 Score=193.82 Aligned_cols=265 Identities=20% Similarity=0.237 Sum_probs=199.9
Q ss_pred cEEEEEeccCCh-----HHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHH-----HHHHhhccCccEEEEEcCC
Q 041333 98 MVLVQIPMFNER-----EVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVEL-----ECQRWASKGINIKYEVRDN 167 (513)
Q Consensus 98 ~VsIiIP~yne~-----~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~-----~~~~~~~~~~~v~~~~~~~ 167 (513)
+-.|++|+|||+ ..++.+-+|+.+...- +...++|..||.|++.. +.|+ .|++.. ...+|-|.+|.+
T Consensus 145 rTAilmPiynEd~~rVfAgLrA~~eSla~Tg~~-~~FD~FVLSDs~dpdia-lAEq~a~~~l~~e~~-g~~~ifYRrRr~ 221 (736)
T COG2943 145 RTAILMPIYNEDVNRVFAGLRATYESLAATGHA-EHFDFFVLSDSRDPDIA-LAEQKAWAELCRELG-GEGNIFYRRRRR 221 (736)
T ss_pred ceeEEeeccccCHHHHHHHHHHHHHHHHhhCCc-ccceEEEEcCCCCchhh-hhHHHHHHHHHHHhC-CCCceeeehHhh
Confidence 588999999998 4678888888876543 45678899999998876 3332 344432 235788888888
Q ss_pred CCCCChhHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcchh
Q 041333 168 RKGYKAGALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYHF 247 (513)
Q Consensus 168 ~~g~Ka~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~ 247 (513)
|.+-|+||+..-.+.= ...+++.+++|||.+..+|++.++++.|+.||+.|++|+.....|. .+++.|.|++.....-
T Consensus 222 n~~RKaGNIaDfcrRw-G~~Y~~MlVLDADSvMtgd~lvrLv~~ME~~P~aGlIQt~P~~~gg-~TL~AR~qQFatrvYG 299 (736)
T COG2943 222 NVKRKAGNIADFCRRW-GSAYSYMLVLDADSVMTGDCLVRLVRLMEANPDAGLIQTSPKASGG-DTLYARCQQFATRVYG 299 (736)
T ss_pred hhcccccCHHHHHHHh-CcccceEEEeecccccCchHHHHHHHHHhhCCCCceeecchhhcCc-chHHHHHHHHHHHHhc
Confidence 8888999988777652 2478999999999999999999999999999999999999988887 4788888876543321
Q ss_pred hHHhhh-cccCCCccccccceeeeeHHHHHHcCCC---------CCCCccchHHHHHHHhhCCCeEEEecccc-cccccC
Q 041333 248 TVEQEV-GSSTHAFFGFNGTAGVWRIAAVNEAGGW---------KDRTTVEDMDLAVRASLKGWKFLYLGTVK-VKNELP 316 (513)
Q Consensus 248 ~~~~~~-~~~~~~~~~~~G~~~~~rr~~l~~~gg~---------~~~~~~ED~~l~~rl~~~G~~i~~~~~~~-~~~~~p 316 (513)
.+...+ .-...+-..+-|+|.++|.+++.+.-|. .+...+.|+-=+-.+.+.||.+...++-- .|+|.|
T Consensus 300 pl~~~GLawW~~~Es~yWGHNAIIRt~aF~~hcgLp~LpG~~pFgG~ilSHDfvEAALmRRaGW~v~ia~dL~GSyEE~P 379 (736)
T COG2943 300 PLFTAGLAWWQLGESHYWGHNAIIRTKAFIEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGWGVWIAYDLDGSYEELP 379 (736)
T ss_pred hHHhhhhHHHhccccccccccceeechhhHHhcCCCCCCCCCCCCccccchHHHHHHHHhhcCceEEEeccCCCchhhCC
Confidence 111110 0011111225599999999999775443 33447889999999999999999998844 589999
Q ss_pred cCHHHHHHHHHhhhhchhHHHHhhccccccccccCcchhhHHHHHHHHHHHHHHHHHH
Q 041333 317 STFKAYRYQQHRWSCGPANLFRKMVMEIVRNKKVSLWKKVHVIYSFFFVRKIIAHIIT 374 (513)
Q Consensus 317 ~~~~~~~~Qr~RW~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (513)
+++-++.++-+||++|++|.++ ++..+++.+..|.+++.+... .+.+|+..
T Consensus 380 pnLlD~l~RDRRWC~GNLqh~r-----l~~~~GlHwvsR~h~~tGVms--YlsaPlWf 430 (736)
T COG2943 380 PNLLDELKRDRRWCHGNLQHFR-----LFLVKGLHWVSRAHFLTGVMS--YLSAPLWF 430 (736)
T ss_pred chHHHHHhhhhHhhhcchhhce-----eeccCCccHHHHHHHHHHHHH--HHhhHHHH
Confidence 9999999999999999998764 456788899999987665432 23445443
No 42
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.91 E-value=1.9e-23 Score=193.78 Aligned_cols=192 Identities=20% Similarity=0.281 Sum_probs=143.0
Q ss_pred EEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHH
Q 041333 100 LVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREG 179 (513)
Q Consensus 100 sIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~g 179 (513)
||+||+||+++.+++||+|+.+|++++.+++| |+|+|+|++.+.+ ++ +.. ++.++...++.| ++.|+|.|
T Consensus 1 sivi~~~n~~~~l~~~l~sl~~q~~~~~eviv-vDd~s~d~~~~~~-~~----~~~---~~~~~~~~~~~g-~~~a~n~~ 70 (202)
T cd06433 1 SIITPTYNQAETLEETIDSVLSQTYPNIEYIV-IDGGSTDGTVDII-KK----YED---KITYWISEPDKG-IYDAMNKG 70 (202)
T ss_pred CEEEeccchHHHHHHHHHHHHhCCCCCceEEE-EeCCCCccHHHHH-HH----hHh---hcEEEEecCCcC-HHHHHHHH
Confidence 69999999999999999999999999865443 6666888887644 32 211 133444444444 89999999
Q ss_pred HHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHhhhcccCCC
Q 041333 180 MKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQEVGSSTHA 259 (513)
Q Consensus 180 l~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (513)
++.+ ++|||+++|+|+.+.|+++.+++..+..+++.++|.|.....+.+........ ...... .....
T Consensus 71 ~~~a---~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~----~~~~~~-----~~~~~ 138 (202)
T cd06433 71 IALA---TGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRVIGRRR----PPPFLD-----KFLLY 138 (202)
T ss_pred HHHc---CCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCcccCCC----Ccchhh-----hHHhh
Confidence 9999 99999999999999999999999777688999999998776554332111100 000000 00111
Q ss_pred ccccccceeeeeHHHHHHcCCCCCC-CccchHHHHHHHhhCCCeEEEeccccccc
Q 041333 260 FFGFNGTAGVWRIAAVNEAGGWKDR-TTVEDMDLAVRASLKGWKFLYLGTVKVKN 313 (513)
Q Consensus 260 ~~~~~G~~~~~rr~~l~~~gg~~~~-~~~ED~~l~~rl~~~G~~i~~~~~~~~~~ 313 (513)
...++++++++||++++++|+|++. ..+||.+++.|+.++|+++.+.|++.+++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~D~~~~~r~~~~g~~~~~~~~~~~~~ 193 (202)
T cd06433 139 GMPICHQATFFRRSLFEKYGGFDESYRIAADYDLLLRLLLAGKIFKYLPEVLAAF 193 (202)
T ss_pred cCcccCcceEEEHHHHHHhCCCchhhCchhhHHHHHHHHHcCCceEecchhhhhh
Confidence 1124577889999999999999876 47899999999999999999999887753
No 43
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=99.91 E-value=1e-22 Score=195.51 Aligned_cols=211 Identities=20% Similarity=0.185 Sum_probs=147.1
Q ss_pred CCCCcEEEEEeccCChHHHHHHHHHHHcC--CCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCC
Q 041333 94 SSYPMVLVQIPMFNEREVYQLSIGAACGL--SWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGY 171 (513)
Q Consensus 94 ~~~P~VsIiIP~yne~~~l~~~l~sl~~q--~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~ 171 (513)
...|+|||+||+|||++.+..+++++.++ ++++.+++| |+|+|+|+|.+. +++..+++ ...++.++..+++.|
T Consensus 6 ~~~~~vsVvIp~yne~~~l~~~l~~l~~~~~~~~~~eiiv-vDdgS~D~t~~i-~~~~~~~~--~~~~v~~~~~~~n~G- 80 (243)
T PLN02726 6 EGAMKYSIIVPTYNERLNIALIVYLIFKALQDVKDFEIIV-VDDGSPDGTQDV-VKQLQKVY--GEDRILLRPRPGKLG- 80 (243)
T ss_pred CCCceEEEEEccCCchhhHHHHHHHHHHHhccCCCeEEEE-EeCCCCCCHHHH-HHHHHHhc--CCCcEEEEecCCCCC-
Confidence 44688999999999999999999988753 344334333 666689988774 44433332 124567776666666
Q ss_pred ChhHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCC-C--chHHHHHHhhhcchhh
Q 041333 172 KAGALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNAD-E--CLMTRLQEMSLDYHFT 248 (513)
Q Consensus 172 Ka~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~-~--~~~~~~~~~~~~~~~~ 248 (513)
++.|+|.|++.+ ++||++++|+|+.++|+++++++..+ .+++.++|.|.....+.. . .+..+...........
T Consensus 81 ~~~a~n~g~~~a---~g~~i~~lD~D~~~~~~~l~~l~~~~-~~~~~~~v~g~r~~~~~~~~~~~~~r~~~~~~~~~~~~ 156 (243)
T PLN02726 81 LGTAYIHGLKHA---SGDFVVIMDADLSHHPKYLPSFIKKQ-RETGADIVTGTRYVKGGGVHGWDLRRKLTSRGANVLAQ 156 (243)
T ss_pred HHHHHHHHHHHc---CCCEEEEEcCCCCCCHHHHHHHHHHH-HhcCCcEEEEccccCCCCcCCccHHHHHHHHHHHHHHH
Confidence 899999999999 99999999999999999999999998 456788888865433221 1 1222222111111000
Q ss_pred HHhhhcccCCCccccccceeeeeHHHHHHcCCCCC-CCccchHHHHHHHhhCCCeEEEecccccccccCcC
Q 041333 249 VEQEVGSSTHAFFGFNGTAGVWRIAAVNEAGGWKD-RTTVEDMDLAVRASLKGWKFLYLGTVKVKNELPST 318 (513)
Q Consensus 249 ~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~gg~~~-~~~~ED~~l~~rl~~~G~~i~~~~~~~~~~~~p~~ 318 (513)
...+ ......+|++.++||+++++++.+.+ ....+|.|++.++.++|+++..+|.....+...++
T Consensus 157 --~~~~---~~~~d~~g~~~~~rr~~~~~i~~~~~~~~~~~~~el~~~~~~~g~~i~~vp~~~~~r~~g~s 222 (243)
T PLN02726 157 --TLLW---PGVSDLTGSFRLYKRSALEDLVSSVVSKGYVFQMEIIVRASRKGYRIEEVPITFVDRVYGES 222 (243)
T ss_pred --HHhC---CCCCcCCCcccceeHHHHHHHHhhccCCCcEEehHHHHHHHHcCCcEEEeCcEEeCCCCCcc
Confidence 0111 11222568889999999999986544 34778999999999999999999987776544443
No 44
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=99.91 E-value=1.2e-23 Score=200.90 Aligned_cols=199 Identities=20% Similarity=0.252 Sum_probs=141.4
Q ss_pred EEEeccCCh-HHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHH
Q 041333 101 VQIPMFNER-EVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREG 179 (513)
Q Consensus 101 IiIP~yne~-~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~g 179 (513)
++||+|||+ +.+.+||+|+.+| ..+ |+|+||++|++.....+. ...++.++..+++.| +++|+|.|
T Consensus 1 ~vI~~yn~~~~~l~~~l~sl~~q---~~~--iivvDn~s~~~~~~~~~~-------~~~~i~~i~~~~n~G-~~~a~N~g 67 (237)
T cd02526 1 AVVVTYNPDLSKLKELLAALAEQ---VDK--VVVVDNSSGNDIELRLRL-------NSEKIELIHLGENLG-IAKALNIG 67 (237)
T ss_pred CEEEEecCCHHHHHHHHHHHhcc---CCE--EEEEeCCCCccHHHHhhc-------cCCcEEEEECCCcee-hHHhhhHH
Confidence 589999999 9999999999998 233 445666666555544321 246788888877777 89999999
Q ss_pred HHhcccCCC---cEEEEEcCCCCCChHHHHHHH---HHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHhhh
Q 041333 180 MKRGYVKSC---DFVVIFDADFQPESDFLTRTI---PFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQEV 253 (513)
Q Consensus 180 l~~a~~~~~---d~I~~lDaD~~~~pd~L~~l~---~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~ 253 (513)
++.+ ++ ||++++|+|+.++|++|++++ ..+.++++++++++.....+..... .......... .... ..
T Consensus 68 ~~~a---~~~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~-~~ 141 (237)
T cd02526 68 IKAA---LENGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENS-PGVRKSGYKL-RIQK-EG 141 (237)
T ss_pred HHHH---HhCCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeec-cceeccCccc-eecc-cc
Confidence 9999 66 999999999999999999994 5555677888877765433322111 1110000000 0000 00
Q ss_pred cccCCCccccccceeeeeHHHHHHcCCCCCCC--ccchHHHHHHHhhCCCeEEEecccccccccCcC
Q 041333 254 GSSTHAFFGFNGTAGVWRIAAVNEAGGWKDRT--TVEDMDLAVRASLKGWKFLYLGTVKVKNELPST 318 (513)
Q Consensus 254 ~~~~~~~~~~~G~~~~~rr~~l~~~gg~~~~~--~~ED~~l~~rl~~~G~~i~~~~~~~~~~~~p~~ 318 (513)
...........|+++++||++++++|||++.. .+||.|++.|+.++|+++.++|++.++|..+.+
T Consensus 142 ~~~~~~~~~~~~~~~~~rr~~~~~~ggfd~~~~~~~eD~d~~~r~~~~G~~~~~~~~~~v~h~~~~~ 208 (237)
T cd02526 142 EEGLKEVDFLITSGSLISLEALEKVGGFDEDLFIDYVDTEWCLRARSKGYKIYVVPDAVLKHELGDK 208 (237)
T ss_pred cCCceEeeeeeccceEEcHHHHHHhCCCCHHHcCccchHHHHHHHHHcCCcEEEEcCeEEEecccCc
Confidence 11111112234778899999999999999875 368999999999999999999999998877665
No 45
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.90 E-value=7.1e-23 Score=190.78 Aligned_cols=177 Identities=19% Similarity=0.208 Sum_probs=143.7
Q ss_pred EEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHH
Q 041333 101 VQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGM 180 (513)
Q Consensus 101 IiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl 180 (513)
||||+|||++.+++||+|+.+|++|+.+++| |+|+|+|+|.+.+ ++.. ...+++++..+++.| .+.++|.|+
T Consensus 1 viI~~~n~~~~l~~~l~sl~~q~~~~~eiii-vD~~s~d~t~~~~-~~~~-----~~~~i~~~~~~~n~g-~~~~~n~~~ 72 (202)
T cd04185 1 AVVVTYNRLDLLKECLDALLAQTRPPDHIIV-IDNASTDGTAEWL-TSLG-----DLDNIVYLRLPENLG-GAGGFYEGV 72 (202)
T ss_pred CEEEeeCCHHHHHHHHHHHHhccCCCceEEE-EECCCCcchHHHH-HHhc-----CCCceEEEECccccc-hhhHHHHHH
Confidence 6899999999999999999999999776544 7777888887744 3221 123477887777776 788999999
Q ss_pred HhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHhhhcccCCCc
Q 041333 181 KRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQEVGSSTHAF 260 (513)
Q Consensus 181 ~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (513)
+.+...++|+++++|+|++++|+++++++..++ +++++++.+.....+.
T Consensus 73 ~~a~~~~~d~v~~ld~D~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~------------------------------ 121 (202)
T cd04185 73 RRAYELGYDWIWLMDDDAIPDPDALEKLLAYAD-KDNPQFLAPLVLDPDG------------------------------ 121 (202)
T ss_pred HHHhccCCCEEEEeCCCCCcChHHHHHHHHHHh-cCCceEecceeEcCCC------------------------------
Confidence 876434799999999999999999999999994 8888888776543221
Q ss_pred cccccceeeeeHHHHHHcCCCCCCC--ccchHHHHHHHhhCCCeEEEecccccccccCcCHH
Q 041333 261 FGFNGTAGVWRIAAVNEAGGWKDRT--TVEDMDLAVRASLKGWKFLYLGTVKVKNELPSTFK 320 (513)
Q Consensus 261 ~~~~G~~~~~rr~~l~~~gg~~~~~--~~ED~~l~~rl~~~G~~i~~~~~~~~~~~~p~~~~ 320 (513)
+++++++||++++++|++++.. .+||.+++.|+.++|+++ ++|++.++|..+.+..
T Consensus 122 ---~~~~~~~~~~~~~~~g~~~~~~~~~~eD~~~~~r~~~~G~~i-~~~~~~~~h~~~~~~~ 179 (202)
T cd04185 122 ---SFVGVLISRRVVEKIGLPDKEFFIWGDDTEYTLRASKAGPGI-YVPDAVVVHKTAINKG 179 (202)
T ss_pred ---ceEEEEEeHHHHHHhCCCChhhhccchHHHHHHHHHHcCCcE-EecceEEEEccccccc
Confidence 2456799999999999988753 789999999999999999 9999999888766543
No 46
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.90 E-value=6.5e-23 Score=184.05 Aligned_cols=163 Identities=21% Similarity=0.358 Sum_probs=140.2
Q ss_pred EEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHH
Q 041333 101 VQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGM 180 (513)
Q Consensus 101 IiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl 180 (513)
|+||+||+++.++++++|+.+|+++..+++| |+|+|+|++.+.+.+ . ..+++++..+++.| +++|+|.|+
T Consensus 1 vii~~~~~~~~l~~~l~sl~~~~~~~~~iii-vdd~s~~~~~~~~~~-----~---~~~~~~~~~~~~~g-~~~a~n~~~ 70 (166)
T cd04186 1 IIIVNYNSLEYLKACLDSLLAQTYPDFEVIV-VDNASTDGSVELLRE-----L---FPEVRLIRNGENLG-FGAGNNQGI 70 (166)
T ss_pred CEEEecCCHHHHHHHHHHHHhccCCCeEEEE-EECCCCchHHHHHHH-----h---CCCeEEEecCCCcC-hHHHhhHHH
Confidence 6899999999999999999999987666544 677788887775432 1 12577777666666 899999999
Q ss_pred HhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHhhhcccCCCc
Q 041333 181 KRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQEVGSSTHAF 260 (513)
Q Consensus 181 ~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (513)
+.+ ++|+++++|+|+.++|+++++++..+..+++++++++.
T Consensus 71 ~~~---~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~------------------------------------ 111 (166)
T cd04186 71 REA---KGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK------------------------------------ 111 (166)
T ss_pred hhC---CCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc------------------------------------
Confidence 999 99999999999999999999999988788899888776
Q ss_pred cccccceeeeeHHHHHHcCCCCCCC--ccchHHHHHHHhhCCCeEEEecccccccc
Q 041333 261 FGFNGTAGVWRIAAVNEAGGWKDRT--TVEDMDLAVRASLKGWKFLYLGTVKVKNE 314 (513)
Q Consensus 261 ~~~~G~~~~~rr~~l~~~gg~~~~~--~~ED~~l~~rl~~~G~~i~~~~~~~~~~~ 314 (513)
..|+++++||++++++|||++.. .+||.+++.|+.++|+++.+.|+..++|.
T Consensus 112 --~~~~~~~~~~~~~~~~~~~~~~~~~~~eD~~~~~~~~~~g~~i~~~~~~~~~h~ 165 (166)
T cd04186 112 --VSGAFLLVRREVFEEVGGFDEDFFLYYEDVDLCLRARLAGYRVLYVPQAVIYHH 165 (166)
T ss_pred --CceeeEeeeHHHHHHcCCCChhhhccccHHHHHHHHHHcCCeEEEccceEEEec
Confidence 45889999999999999999864 67999999999999999999999988764
No 47
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.90 E-value=4.9e-23 Score=193.24 Aligned_cols=199 Identities=18% Similarity=0.118 Sum_probs=143.4
Q ss_pred EEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHH
Q 041333 100 LVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREG 179 (513)
Q Consensus 100 sIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~g 179 (513)
||+||+|||++.+++||+|+++|+||+.+++| |+|+|+|+|.+. +++..+++ +..+.+...+++.| +++++|.|
T Consensus 1 sIvIp~yn~~~~l~~~l~sl~~q~~~~~eiiV-vddgS~d~t~~~-~~~~~~~~---~~~~~~~~~~~~~G-~~~~~n~g 74 (214)
T cd04196 1 AVLMATYNGEKYLREQLDSILAQTYKNDELII-SDDGSTDGTVEI-IKEYIDKD---PFIIILIRNGKNLG-VARNFESL 74 (214)
T ss_pred CEEEEecCcHHHHHHHHHHHHhCcCCCeEEEE-EeCCCCCCcHHH-HHHHHhcC---CceEEEEeCCCCcc-HHHHHHHH
Confidence 69999999999999999999999999655544 667788888774 44333322 23455565565555 89999999
Q ss_pred HHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHhhhcccCCC
Q 041333 180 MKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQEVGSSTHA 259 (513)
Q Consensus 180 l~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (513)
++.+ ++|||+++|+|+.++|+++++++..+.++++.+++++.....+.+............. ....... .....
T Consensus 75 ~~~~---~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~ 148 (214)
T cd04196 75 LQAA---DGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQK--IKPGTSF-NNLLF 148 (214)
T ss_pred HHhC---CCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCcccccccccc--cCCccCH-HHHHH
Confidence 9999 9999999999999999999999999668889899988866544433221111000000 0000000 00001
Q ss_pred ccccccceeeeeHHHHHHcCCCCCC-CccchHHHHHHHhhCCCeEEEeccccc
Q 041333 260 FFGFNGTAGVWRIAAVNEAGGWKDR-TTVEDMDLAVRASLKGWKFLYLGTVKV 311 (513)
Q Consensus 260 ~~~~~G~~~~~rr~~l~~~gg~~~~-~~~ED~~l~~rl~~~G~~i~~~~~~~~ 311 (513)
...+.|+++++||++++++|++++. ...||.++..++.. |.++.+++++.+
T Consensus 149 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~-~~~~~~~~~~~~ 200 (214)
T cd04196 149 QNVVTGCTMAFNRELLELALPFPDADVIMHDWWLALLASA-FGKVVFLDEPLI 200 (214)
T ss_pred hCccCCceeeEEHHHHHhhccccccccccchHHHHHHHHH-cCceEEcchhHH
Confidence 1124688999999999999999887 68899999998877 668999998765
No 48
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.90 E-value=2.7e-22 Score=189.41 Aligned_cols=184 Identities=21% Similarity=0.214 Sum_probs=132.5
Q ss_pred EEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHH
Q 041333 99 VLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALRE 178 (513)
Q Consensus 99 VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~ 178 (513)
|||+||+||+++.+.++|+|+.+|.+++.+++| |+|+|+|++.+.+.+ .++.+... +.| ++.++|.
T Consensus 1 vsvii~~~n~~~~l~~~l~sl~~q~~~~~eviv-vdd~s~d~~~~~~~~----------~~~~~~~~--~~g-~~~a~n~ 66 (221)
T cd02522 1 LSIIIPTLNEAENLPRLLASLRRLNPLPLEIIV-VDGGSTDGTVAIARS----------AGVVVISS--PKG-RARQMNA 66 (221)
T ss_pred CEEEEEccCcHHHHHHHHHHHHhccCCCcEEEE-EeCCCCccHHHHHhc----------CCeEEEeC--CcC-HHHHHHH
Confidence 689999999999999999999999997666544 666688888774421 45555543 344 8899999
Q ss_pred HHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHhhhcccCC
Q 041333 179 GMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQEVGSSTH 258 (513)
Q Consensus 179 gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (513)
|++.+ ++|+|+++|+|+.++|+++++++..+ .+++..++.......+. +...+....... ......
T Consensus 67 g~~~a---~~~~i~~~D~D~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--------~~~~~~ 132 (221)
T cd02522 67 GAAAA---RGDWLLFLHADTRLPPDWDAAIIETL-RADGAVAGAFRLRFDDP--GPRLRLLELGAN--------LRSRLF 132 (221)
T ss_pred HHHhc---cCCEEEEEcCCCCCChhHHHHHHHHh-hcCCcEEEEEEeeecCC--ccchhhhhhccc--------ceeccc
Confidence 99999 99999999999999999999998777 44444444443333332 211111110000 000011
Q ss_pred CccccccceeeeeHHHHHHcCCCCCCCccchHHHHHHHhhCCCeEEEecccccc
Q 041333 259 AFFGFNGTAGVWRIAAVNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLGTVKVK 312 (513)
Q Consensus 259 ~~~~~~G~~~~~rr~~l~~~gg~~~~~~~ED~~l~~rl~~~G~~i~~~~~~~~~ 312 (513)
...+.+.++++||++++++|||++....||.|++.|+.++|+++.+ |...+.
T Consensus 133 -~~~~~~~~~~~r~~~~~~~G~fd~~~~~ED~d~~~r~~~~G~~~~~-~~~~~~ 184 (221)
T cd02522 133 -GLPYGDQGLFIRRELFEELGGFPELPLMEDVELVRRLRRRGRPALL-PSPVTT 184 (221)
T ss_pred -CCCcCCceEEEEHHHHHHhCCCCccccccHHHHHHHHHhCCCEEEc-Cceeee
Confidence 1123466889999999999999998899999999999999999977 655543
No 49
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=99.90 E-value=2.1e-22 Score=190.65 Aligned_cols=202 Identities=19% Similarity=0.199 Sum_probs=142.3
Q ss_pred EEEeccCChHHHHHHHHHHHcCCC-CCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHH
Q 041333 101 VQIPMFNEREVYQLSIGAACGLSW-PSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREG 179 (513)
Q Consensus 101 IiIP~yne~~~l~~~l~sl~~q~y-p~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~g 179 (513)
|+||+|||++.+.++++|+.+|.+ ++.+++| |+|+|+|+|.+.+ +. +.++..+++++..+.+.| ++.|+|.|
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~~~~~eiii-VDd~S~d~t~~~~-~~----~~~~~~~i~~~~~~~n~G-~~~a~n~g 73 (224)
T cd06442 1 IIIPTYNERENIPELIERLDAALKGIDYEIIV-VDDNSPDGTAEIV-RE----LAKEYPRVRLIVRPGKRG-LGSAYIEG 73 (224)
T ss_pred CeEeccchhhhHHHHHHHHHHhhcCCCeEEEE-EeCCCCCChHHHH-HH----HHHhCCceEEEecCCCCC-hHHHHHHH
Confidence 689999999999999999999998 4444433 6666889887743 33 323345677777776666 89999999
Q ss_pred HHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCC-Cc--hHHHHHHhhhcchhhHHhhhccc
Q 041333 180 MKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNAD-EC--LMTRLQEMSLDYHFTVEQEVGSS 256 (513)
Q Consensus 180 l~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~-~~--~~~~~~~~~~~~~~~~~~~~~~~ 256 (513)
++.| ++|+|+++|+|+.++|+++++++..+ .+++.++|.|........ .+ +..+..... ... ..... .
T Consensus 74 ~~~a---~gd~i~~lD~D~~~~~~~l~~l~~~~-~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~--~ 144 (224)
T cd06442 74 FKAA---RGDVIVVMDADLSHPPEYIPELLEAQ-LEGGADLVIGSRYVEGGGVEGWGLKRKLISRG--ANL-LARLL--L 144 (224)
T ss_pred HHHc---CCCEEEEEECCCCCCHHHHHHHHHHH-hcCCCCEEEEeeeecCCccCCCcHHHHHHHHH--HHH-HHHHH--c
Confidence 9999 99999999999999999999999987 455667777665433221 11 111110000 000 00000 1
Q ss_pred CCCccccccceeeeeHHHHHHcC-CCCCCCccchHHHHHHHhhCCCeEEEecccccccccCcC
Q 041333 257 THAFFGFNGTAGVWRIAAVNEAG-GWKDRTTVEDMDLAVRASLKGWKFLYLGTVKVKNELPST 318 (513)
Q Consensus 257 ~~~~~~~~G~~~~~rr~~l~~~g-g~~~~~~~ED~~l~~rl~~~G~~i~~~~~~~~~~~~p~~ 318 (513)
........|++.++||++++++| +++.....+|.|++.++.+.|+++.+.|.....+..-.+
T Consensus 145 ~~~~~~~~~~~~~~~r~~~~~ig~~~~~~~~~~~~~l~~~~~~~g~~i~~~p~~~~~~~~g~s 207 (224)
T cd06442 145 GRKVSDPTSGFRAYRREVLEKLIDSLVSKGYKFQLELLVRARRLGYRIVEVPITFVDREHGES 207 (224)
T ss_pred CCCCCCCCCccchhhHHHHHHHhhhccCCCcEEeHHHHHHHHHcCCeEEEeCeEEeccCCCcC
Confidence 11222355788899999999998 555556778999999999999999999987765544433
No 50
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=99.89 E-value=7.1e-22 Score=186.55 Aligned_cols=200 Identities=13% Similarity=0.096 Sum_probs=134.0
Q ss_pred EEEeccCChHHHHHHHHHHHcCCCCC-CeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCC---CCCCChhHH
Q 041333 101 VQIPMFNEREVYQLSIGAACGLSWPS-DRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDN---RKGYKAGAL 176 (513)
Q Consensus 101 IiIP~yne~~~l~~~l~sl~~q~yp~-~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~---~~g~Ka~al 176 (513)
|+||+||+++.+++||+|+.+|+||. .+++| |+|+|+|+|.+ ++++..+++. ..+++++..+. .+.|.+.|+
T Consensus 1 ViIp~yn~~~~l~~~l~sl~~q~~~~~~eiiV-vDd~S~d~t~~-i~~~~~~~~~--~~~~~~~~~~~~~~~~~G~~~a~ 76 (219)
T cd06913 1 IILPVHNGEQWLDECLESVLQQDFEGTLELSV-FNDASTDKSAE-IIEKWRKKLE--DSGVIVLVGSHNSPSPKGVGYAK 76 (219)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCCCCCEEEEE-EeCCCCccHHH-HHHHHHHhCc--ccCeEEEEecccCCCCccHHHHH
Confidence 68999999999999999999999984 34333 66668888876 4444444432 23555554322 222478899
Q ss_pred HHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCC-chHHHHHHhhhcchhhHHhhhcc
Q 041333 177 REGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADE-CLMTRLQEMSLDYHFTVEQEVGS 255 (513)
Q Consensus 177 n~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~-~~~~~~~~~~~~~~~~~~~~~~~ 255 (513)
|.|++.+ +|||++++|+|+.++|+++++++..+.+++. +++++.......+. ....+... ..... ........
T Consensus 77 N~g~~~a---~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~ 150 (219)
T cd06913 77 NQAIAQS---SGRYLCFLDSDDVMMPQRIRLQYEAALQHPN-SIIGCQVRRIPEDSTERYTRWIN-TLTRE-QLLTQVYT 150 (219)
T ss_pred HHHHHhc---CCCEEEEECCCccCChhHHHHHHHHHHhCCC-cEEEEEEEecCcccchhhHHHHH-hcCHH-HHHHHHHh
Confidence 9999999 9999999999999999999999888865554 45555443322211 11111111 00000 00000000
Q ss_pred cCCCccccccceeeeeHHHHHHcCCCCCCC--ccchHHHHHHHhhCCCeEEEecccccc
Q 041333 256 STHAFFGFNGTAGVWRIAAVNEAGGWKDRT--TVEDMDLAVRASLKGWKFLYLGTVKVK 312 (513)
Q Consensus 256 ~~~~~~~~~G~~~~~rr~~l~~~gg~~~~~--~~ED~~l~~rl~~~G~~i~~~~~~~~~ 312 (513)
..+. +......++||++++++|||++.. ..||++++.|+.++|+++.++|++...
T Consensus 151 ~~~~--~~~~~~~~~rr~~~~~~g~f~~~~~~~~eD~~l~~r~~~~g~~i~~~~~~~~~ 207 (219)
T cd06913 151 SHGP--TVIMPTWFCSREWFSHVGPFDEGGKGVPEDLLFFYEHLRKGGGVYRVDRCLLL 207 (219)
T ss_pred hcCC--ccccccceeehhHHhhcCCccchhccchhHHHHHHHHHHcCCceEEEcceeee
Confidence 0111 112334679999999999998753 579999999999999999999997764
No 51
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=99.89 E-value=4.4e-22 Score=182.05 Aligned_cols=176 Identities=23% Similarity=0.231 Sum_probs=131.8
Q ss_pred EEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHH
Q 041333 101 VQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGM 180 (513)
Q Consensus 101 IiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl 180 (513)
|+||+||+++.+++||+|+.+|++++.+++| |+|+|+|+|.+.+ +...+. .+.++..+.+++...++++++|.|+
T Consensus 1 ivip~~n~~~~l~~~l~sl~~q~~~~~eiiv-vdd~s~d~t~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~n~g~ 75 (182)
T cd06420 1 LIITTYNRPEALELVLKSVLNQSILPFEVII-ADDGSTEETKELI-EEFKSQ---FPIPIKHVWQEDEGFRKAKIRNKAI 75 (182)
T ss_pred CEEeecCChHHHHHHHHHHHhccCCCCEEEE-EeCCCchhHHHHH-HHHHhh---cCCceEEEEcCCcchhHHHHHHHHH
Confidence 6899999999999999999999998777554 6777888876644 322221 1234455544444335889999999
Q ss_pred HhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHhhhcccCCCc
Q 041333 181 KRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQEVGSSTHAF 260 (513)
Q Consensus 181 ~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (513)
+.+ ++|+++++|+|+.++|+++++++..+ ++++.+++++... +.+...
T Consensus 76 ~~a---~g~~i~~lD~D~~~~~~~l~~~~~~~--~~~~~v~g~~~~~-~~~~~~-------------------------- 123 (182)
T cd06420 76 AAA---KGDYLIFIDGDCIPHPDFIADHIELA--EPGVFLSGSRVLL-NEKLTE-------------------------- 123 (182)
T ss_pred HHh---cCCEEEEEcCCcccCHHHHHHHHHHh--CCCcEEecceeec-ccccce--------------------------
Confidence 999 99999999999999999999999987 5666665555432 221110
Q ss_pred cccccceeeeeHHHHHHcCCCCCCC---ccchHHHHHHHhhCCCeEEEe-ccccccc
Q 041333 261 FGFNGTAGVWRIAAVNEAGGWKDRT---TVEDMDLAVRASLKGWKFLYL-GTVKVKN 313 (513)
Q Consensus 261 ~~~~G~~~~~rr~~l~~~gg~~~~~---~~ED~~l~~rl~~~G~~i~~~-~~~~~~~ 313 (513)
....|++++++|+.+.+.|||++.. ..||+|++.|+.++|++...+ +++.++|
T Consensus 124 ~~~~~~~~~~~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g~~~~~~~~~~~~~h 180 (182)
T cd06420 124 RGIRGCNMSFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSGIKFRKLKFAAIVFH 180 (182)
T ss_pred eEeccceEEEEHHHHHHhCCCCcccccCCcchHHHHHHHHHcCCcEEEecccceeee
Confidence 2245788889999999999999865 479999999999999555444 4666665
No 52
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=99.89 E-value=3.2e-22 Score=185.06 Aligned_cols=142 Identities=32% Similarity=0.511 Sum_probs=126.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHhhhcccCCCccccccceee
Q 041333 190 FVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQEVGSSTHAFFGFNGTAGV 269 (513)
Q Consensus 190 ~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 269 (513)
||+++|+|+.++||+++++++.++ +|+++++|++....+ .+++.++.+..++.......+...+..+....++|++++
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~-~~~~~~vq~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 78 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALE-DPKVDAVQGPIIFRN-RGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGML 78 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHh-CCCceEEEccEEecC-CCChhheeehhhhhhhhhhhHHHHHhcCCCccccCccee
Confidence 689999999999999999999995 899999999999864 468888888887655444444445556666668899999
Q ss_pred eeHHHHHHcCCCC-CCCccchHHHHHHHhhCCCeEEEecccccccccCcCHHHHHHHHHhhhhch
Q 041333 270 WRIAAVNEAGGWK-DRTTVEDMDLAVRASLKGWKFLYLGTVKVKNELPSTFKAYRYQQHRWSCGP 333 (513)
Q Consensus 270 ~rr~~l~~~gg~~-~~~~~ED~~l~~rl~~~G~~i~~~~~~~~~~~~p~~~~~~~~Qr~RW~~G~ 333 (513)
+|+++++++|||+ ....+||.|++.|+.++||++.++|++.++++.|+|++++.+||.||.+|.
T Consensus 79 ~r~~~l~~vg~~~~~~~~~ED~~l~~~l~~~G~~~~~~~~~~~~~~~p~t~~~~~~Qr~RW~~g~ 143 (193)
T PF13632_consen 79 FRREALREVGGFDDPFSIGEDMDLGFRLRRAGYRIVYVPDAIVYTEAPPTFRAFIRQRRRWARGA 143 (193)
T ss_pred eeHHHHHHhCcccccccccchHHHHHHHHHCCCEEEEecccceeeeCCCCHHHHHHHHHHHHhhh
Confidence 9999999999999 777999999999999999999999999999999999999999999999997
No 53
>PRK10073 putative glycosyl transferase; Provisional
Probab=99.89 E-value=2.9e-22 Score=199.92 Aligned_cols=202 Identities=16% Similarity=0.213 Sum_probs=139.8
Q ss_pred CCCcEEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChh
Q 041333 95 SYPMVLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAG 174 (513)
Q Consensus 95 ~~P~VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~ 174 (513)
..|.||||||+||+++.+++||+|+++|+|++.|++| |+|+|+|+|.+. +++ +.++..++++++.+ +. |.+.
T Consensus 4 ~~p~vSVIIP~yN~~~~L~~~l~Sl~~Qt~~~~EIIi-VdDgStD~t~~i-~~~----~~~~~~~i~vi~~~-n~-G~~~ 75 (328)
T PRK10073 4 STPKLSIIIPLYNAGKDFRAFMESLIAQTWTALEIII-VNDGSTDNSVEI-AKH----YAENYPHVRLLHQA-NA-GVSV 75 (328)
T ss_pred CCCeEEEEEeccCCHHHHHHHHHHHHhCCCCCeEEEE-EeCCCCccHHHH-HHH----HHhhCCCEEEEECC-CC-ChHH
Confidence 3588999999999999999999999999999877655 788899988874 333 43445678888643 44 4899
Q ss_pred HHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEE--EecCCCc--hH--HHHHHhhh-cchh
Q 041333 175 ALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWE--FVNADEC--LM--TRLQEMSL-DYHF 247 (513)
Q Consensus 175 aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~--~~n~~~~--~~--~~~~~~~~-~~~~ 247 (513)
|+|.|++.| +||||+++|+|+.++|+++++++..++ +++.+++.+... ..+.... .. .+...... ....
T Consensus 76 arN~gl~~a---~g~yi~flD~DD~~~p~~l~~l~~~~~-~~~~dvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (328)
T PRK10073 76 ARNTGLAVA---TGKYVAFPDADDVVYPTMYETLMTMAL-EDDLDVAQCNADWCFRDTGETWQSIPSDRLRSTGVLSGPD 151 (328)
T ss_pred HHHHHHHhC---CCCEEEEECCCCccChhHHHHHHHHHH-hCCCCEEEEccEEEEeCCCccccccccccccccceechHH
Confidence 999999999 999999999999999999999999874 445555544322 2221110 00 00000000 0000
Q ss_pred hHHhhhcccCCCccccccceeeeeHHHHHHcC-CCCCCCccchHHHHHHHhhCCCeEEEeccccc
Q 041333 248 TVEQEVGSSTHAFFGFNGTAGVWRIAAVNEAG-GWKDRTTVEDMDLAVRASLKGWKFLYLGTVKV 311 (513)
Q Consensus 248 ~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~g-g~~~~~~~ED~~l~~rl~~~G~~i~~~~~~~~ 311 (513)
........ .. ......+.++||+.+++.| .|++....||.++..++..++.++.+++++..
T Consensus 152 ~l~~~l~~--~~-~~~~~~~~l~Rr~~l~~~~~~f~~~~~~eD~~~~~~~~~~~~~v~~~~~~ly 213 (328)
T PRK10073 152 WLRMALSS--RR-WTHVVWLGVYRRDFIVKNNIKFEPGLHHQDIPWTTEVMFNALRVRYTEQSLY 213 (328)
T ss_pred HHHHHHhh--CC-CCccHhHHHHHHHHHHHcCCccCCCCEeccHHHHHHHHHHCCEEEEECCCEE
Confidence 00000000 00 1112335689999999987 46666677999999999999999999998765
No 54
>PRK10018 putative glycosyl transferase; Provisional
Probab=99.88 E-value=3e-21 Score=187.49 Aligned_cols=225 Identities=13% Similarity=0.105 Sum_probs=146.2
Q ss_pred CCCcEEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChh
Q 041333 95 SYPMVLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAG 174 (513)
Q Consensus 95 ~~P~VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~ 174 (513)
+.|.|||+||+||+++.+.+||+|+++|+||+.|++| |+|+|+| .+ ..++..+++ .+.+++++..+.+.| .+.
T Consensus 3 ~~p~VSVIip~yN~~~~l~~~l~Svl~Qt~~~~EiIV-VDDgS~~--~~-~~~~~~~~~--~~~ri~~i~~~~n~G-~~~ 75 (279)
T PRK10018 3 DNPLISIYMPTWNRQQLAIRAIKSVLRQDYSNWEMII-VDDCSTS--WE-QLQQYVTAL--NDPRITYIHNDINSG-ACA 75 (279)
T ss_pred CCCEEEEEEEeCCCHHHHHHHHHHHHhCCCCCeEEEE-EECCCCC--HH-HHHHHHHHc--CCCCEEEEECCCCCC-HHH
Confidence 3688999999999999999999999999999866544 6666764 22 233333332 346788888777666 899
Q ss_pred HHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhh--cchhhHHhh
Q 041333 175 ALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSL--DYHFTVEQE 252 (513)
Q Consensus 175 aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~--~~~~~~~~~ 252 (513)
|+|.|++.| +||||+++|+|+.++|+.|++++..+.+.++.+++.+.....+. ... ........ ...+.....
T Consensus 76 a~N~gi~~a---~g~~I~~lDaDD~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~p~~~~~~~~~ 150 (279)
T PRK10018 76 VRNQAIMLA---QGEYITGIDDDDEWTPNRLSVFLAHKQQLVTHAFLYANDYVCQG-EVY-SQPASLPLYPKSPYSRRLF 150 (279)
T ss_pred HHHHHHHHc---CCCEEEEECCCCCCCccHHHHHHHHHHhCCCccEEEccceeecC-ccc-ccccccCCCCCCCCCHHHH
Confidence 999999999 99999999999999999999999988655666666554322111 100 00000000 000000000
Q ss_pred hcccCCCccccccceeeeeHHHHHHcCCCCCCC-ccchHHHHHHHhhCCCeEEEeccccc-ccccCcCHHHHHHHHHhhh
Q 041333 253 VGSSTHAFFGFNGTAGVWRIAAVNEAGGWKDRT-TVEDMDLAVRASLKGWKFLYLGTVKV-KNELPSTFKAYRYQQHRWS 330 (513)
Q Consensus 253 ~~~~~~~~~~~~G~~~~~rr~~l~~~gg~~~~~-~~ED~~l~~rl~~~G~~i~~~~~~~~-~~~~p~~~~~~~~Qr~RW~ 330 (513)
. ..++.|+..+.++..+.+ ++|+++. .+||+|+..|+..+|++...+|++.. ++..+.+.+...+.. + .
T Consensus 151 ~------~~n~ig~~~~~~~~~~~~-~~fd~~~~~~eDydlwlrl~~~~~~~~~~~~~l~~y~~~~~s~~~~~s~~-k-~ 221 (279)
T PRK10018 151 Y------KRNIIGNQVFTWAWRFKE-CLFDTELKAAQDYDIFLRMVVEYGEPWKVEEATQILHINHGEMQITSSPK-K-F 221 (279)
T ss_pred H------HhcCcCceeeehhhhhhh-cccCCCCCccccHHHHHHHHHhcCceEeeccceEEEEcCCCCccccCCHH-H-H
Confidence 0 011335556666666654 5787664 78999999999999999999998744 444444442111111 1 3
Q ss_pred hchhHHHHhh
Q 041333 331 CGPANLFRKM 340 (513)
Q Consensus 331 ~G~~~~~~~~ 340 (513)
++..+++++|
T Consensus 222 ~~~~~~~rk~ 231 (279)
T PRK10018 222 SGYFHFYRKH 231 (279)
T ss_pred HHHHHHHHHh
Confidence 4444666665
No 55
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=99.88 E-value=2.7e-22 Score=180.97 Aligned_cols=180 Identities=31% Similarity=0.450 Sum_probs=132.2
Q ss_pred EEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHH
Q 041333 101 VQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGM 180 (513)
Q Consensus 101 IiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl 180 (513)
|+||+||+++.+.+||+|+.+|.+++.+++| |+|+|+|++.+.+.+ ...+ ....+.++..+++.| ++.++|.|+
T Consensus 1 Viip~~n~~~~l~~~l~sl~~q~~~~~~iiv-vdd~s~d~t~~~~~~-~~~~---~~~~~~~~~~~~~~g-~~~~~n~~~ 74 (180)
T cd06423 1 IIVPAYNEEAVIERTIESLLALDYPKLEVIV-VDDGSTDDTLEILEE-LAAL---YIRRVLVVRDKENGG-KAGALNAGL 74 (180)
T ss_pred CeecccChHHHHHHHHHHHHhCCCCceEEEE-EeCCCccchHHHHHH-Hhcc---ccceEEEEEecccCC-chHHHHHHH
Confidence 6899999999999999999999998766554 677788888775433 2111 123455666665655 999999999
Q ss_pred HhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHhhhcccCCCc
Q 041333 181 KRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQEVGSSTHAF 260 (513)
Q Consensus 181 ~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (513)
+.+ ++|+++++|+|+.++|+++++++..+.++++++++++.....+.+.++..........................
T Consensus 75 ~~~---~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (180)
T cd06423 75 RHA---KGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSALGGV 151 (180)
T ss_pred Hhc---CCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhheecce
Confidence 999 99999999999999999999997777688999999998877665433333332222221111111111122334
Q ss_pred cccccceeeeeHHHHHHcCCCCCCCccch
Q 041333 261 FGFNGTAGVWRIAAVNEAGGWKDRTTVED 289 (513)
Q Consensus 261 ~~~~G~~~~~rr~~l~~~gg~~~~~~~ED 289 (513)
...+|+++++||++++++|||++..++||
T Consensus 152 ~~~~g~~~~~~~~~~~~~ggf~~~~~~eD 180 (180)
T cd06423 152 LVLSGAFGAFRREALREVGGWDEDTLTED 180 (180)
T ss_pred eecCchHHHHHHHHHHHhCCccccCcCCC
Confidence 45779999999999999999999999998
No 56
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=99.88 E-value=3.2e-21 Score=191.20 Aligned_cols=213 Identities=21% Similarity=0.316 Sum_probs=159.1
Q ss_pred CCcEEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhH
Q 041333 96 YPMVLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGA 175 (513)
Q Consensus 96 ~P~VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~a 175 (513)
.|+++++|++||..+.+.+|++++.+|+|+.+.++ +|+++|+|++.+.+.+.. ..+++++..++|.|+ +++
T Consensus 2 ~~~i~~iiv~yn~~~~l~~~l~~l~~~~~~~~~iv-~vDn~s~d~~~~~~~~~~-------~~~v~~i~~~~NlG~-agg 72 (305)
T COG1216 2 MPKISIIIVTYNRGEDLVECLASLAAQTYPDDVIV-VVDNGSTDGSLEALKARF-------FPNVRLIENGENLGF-AGG 72 (305)
T ss_pred CcceEEEEEecCCHHHHHHHHHHHhcCCCCCcEEE-EccCCCCCCCHHHHHhhc-------CCcEEEEEcCCCccc-hhh
Confidence 47899999999999999999999999999976554 366679999988654311 478999999989885 899
Q ss_pred HHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHH-h---hhcchh-h-H
Q 041333 176 LREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQE-M---SLDYHF-T-V 249 (513)
Q Consensus 176 ln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~-~---~~~~~~-~-~ 249 (513)
.|.|++.|.....+|++++|.|+.++||+|+++++.++.++..+++++.....+... ....... . ...... . .
T Consensus 73 ~n~g~~~a~~~~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 151 (305)
T COG1216 73 FNRGIKYALAKGDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESL-YIDRRGGESDGLTGGWRASPLL 151 (305)
T ss_pred hhHHHHHHhcCCCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCc-chheeccccccccccceecccc
Confidence 999999994322339999999999999999999999988889888888776443211 1111110 0 000000 0 0
Q ss_pred Hhh-hcccCCCcc-ccccceeeeeHHHHHHcCCCCCCC--ccchHHHHHHHhhCCCeEEEecccccccccCcC
Q 041333 250 EQE-VGSSTHAFF-GFNGTAGVWRIAAVNEAGGWKDRT--TVEDMDLAVRASLKGWKFLYLGTVKVKNELPST 318 (513)
Q Consensus 250 ~~~-~~~~~~~~~-~~~G~~~~~rr~~l~~~gg~~~~~--~~ED~~l~~rl~~~G~~i~~~~~~~~~~~~p~~ 318 (513)
... ......... .++|+++++||++++++|+|+++. ..||.|++.|+.++|+++.++|++.++|....+
T Consensus 152 ~~~~~~~~~~~~~~~~~G~~~li~~~~~~~vG~~de~~F~y~eD~D~~~R~~~~G~~i~~~p~a~i~H~~g~s 224 (305)
T COG1216 152 EIAPDLSSYLEVVASLSGACLLIRREAFEKVGGFDERFFIYYEDVDLCLRARKAGYKIYYVPDAIIYHKIGSS 224 (305)
T ss_pred cccccccchhhhhhhcceeeeEEcHHHHHHhCCCCcccceeehHHHHHHHHHHcCCeEEEeeccEEEEeccCC
Confidence 000 000000111 268999999999999999999965 789999999999999999999999998866555
No 57
>PRK10063 putative glycosyl transferase; Provisional
Probab=99.86 E-value=2.8e-20 Score=178.45 Aligned_cols=190 Identities=13% Similarity=0.052 Sum_probs=128.3
Q ss_pred CcEEEEEeccCChHHHHHHHHHHHc---CCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCCh
Q 041333 97 PMVLVQIPMFNEREVYQLSIGAACG---LSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKA 173 (513)
Q Consensus 97 P~VsIiIP~yne~~~l~~~l~sl~~---q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka 173 (513)
|.||||||+||+++.+++|++|+.+ |.+++.|++| |+|+|+|+|.+.+ ++ +.. ..+++++..+ +.| ++
T Consensus 1 ~~vSVIi~~yN~~~~l~~~l~sl~~~~~~~~~~~EiIV-vDdgStD~t~~i~-~~----~~~-~~~i~~i~~~-~~G-~~ 71 (248)
T PRK10063 1 MLLSVITVAFRNLEGIVKTHASLRHLAQDPGISFEWIV-VDGGSNDGTREFL-EN----LNG-IFNLRFVSEP-DNG-IY 71 (248)
T ss_pred CeEEEEEEeCCCHHHHHHHHHHHHHHHhCCCCCEEEEE-EECcCcccHHHHH-HH----hcc-cCCEEEEECC-CCC-HH
Confidence 6799999999999999999999975 3355544433 6666999988854 32 211 2357777654 445 89
Q ss_pred hHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHhhh
Q 041333 174 GALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQEV 253 (513)
Q Consensus 174 ~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~ 253 (513)
.|+|.|++.| +||||+++|+|+...|+.++.+.....++++..+++......+. .....+... ..
T Consensus 72 ~A~N~Gi~~a---~g~~v~~ld~DD~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~-~~~~~~~~~------~~----- 136 (248)
T PRK10063 72 DAMNKGIAMA---QGRFALFLNSGDIFHQDAANFVRQLKMQKDNAMIIGDALLDFGD-GHKIKRSAK------PG----- 136 (248)
T ss_pred HHHHHHHHHc---CCCEEEEEeCCcccCcCHHHHHHHHHhCCCCeEEEeeeEEEcCC-CcEEEEccC------Ch-----
Confidence 9999999999 99999999999999998766544443333444444443322221 111000000 00
Q ss_pred cccCCCccccccceeeeeHHHHHHcCCCCCCC-ccchHHHHHHHhhCCCeEEEecccccc
Q 041333 254 GSSTHAFFGFNGTAGVWRIAAVNEAGGWKDRT-TVEDMDLAVRASLKGWKFLYLGTVKVK 312 (513)
Q Consensus 254 ~~~~~~~~~~~G~~~~~rr~~l~~~gg~~~~~-~~ED~~l~~rl~~~G~~i~~~~~~~~~ 312 (513)
.........++.+.+++++.++. |+|++.. ..||+|+..|+.++|+++.++|...+.
T Consensus 137 -~~~~~~~~~~~~~~~~~~~~~~~-~~fd~~~~~~~Dydl~lrl~~~g~~~~~v~~~l~~ 194 (248)
T PRK10063 137 -WYIYHSLPASHQAIFFPVSGLKK-WRYDLQYKVSSDYALAARLYKAGYAFKKLNGLVSE 194 (248)
T ss_pred -hHHhcCCCCCCcEEEEEHHHHhc-CCCCcccchHHhHHHHHHHHHcCCcEEEcCceeEE
Confidence 00000112456678899998875 6788764 779999999999999999999988774
No 58
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=99.85 E-value=5.5e-19 Score=176.46 Aligned_cols=206 Identities=16% Similarity=0.130 Sum_probs=138.3
Q ss_pred CCCCcEEEEEeccCChHHHHHHHHHHHcC-------CCC-CCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEc
Q 041333 94 SSYPMVLVQIPMFNEREVYQLSIGAACGL-------SWP-SDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVR 165 (513)
Q Consensus 94 ~~~P~VsIiIP~yne~~~l~~~l~sl~~q-------~yp-~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~ 165 (513)
+..|.+||+||+|||++.++++++++.++ +++ +.++ |+|+|+|+|+|.+.+ ++..+++...+.+++++..
T Consensus 67 ~~~~~isVVIP~yNe~~~i~~~L~~l~~~~~~~~~~~~~~~~EI-IVVDDgStD~T~~i~-~~~~~~~~~~~~~i~vi~~ 144 (333)
T PTZ00260 67 DSDVDLSIVIPAYNEEDRLPKMLKETIKYLESRSRKDPKFKYEI-IIVNDGSKDKTLKVA-KDFWRQNINPNIDIRLLSL 144 (333)
T ss_pred CCCeEEEEEEeeCCCHHHHHHHHHHHHHHHHhhhccCCCCCEEE-EEEeCCCCCchHHHH-HHHHHhcCCCCCcEEEEEc
Confidence 45678999999999999999999998753 222 2333 336667999998854 4333332112346888877
Q ss_pred CCCCCCChhHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhc--CCCeeEEEeeEEEecCC-----CchHHHH
Q 041333 166 DNRKGYKAGALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVH--NPQLALVQARWEFVNAD-----ECLMTRL 238 (513)
Q Consensus 166 ~~~~g~Ka~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~--~~~v~~V~~~~~~~n~~-----~~~~~~~ 238 (513)
+.|.| |++|+|.|++.+ +||+|+++|+|...+|+.+.+++..+++ +++.++|.|.......+ .++..+.
T Consensus 145 ~~N~G-~~~A~~~Gi~~a---~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~~~~~~~~~r~~ 220 (333)
T PTZ00260 145 LRNKG-KGGAVRIGMLAS---RGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSDVVAKRKWYRNI 220 (333)
T ss_pred CCCCC-hHHHHHHHHHHc---cCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCcccccCcHHHHH
Confidence 77766 999999999999 9999999999999999999999988853 57788888876543211 1233332
Q ss_pred HHhhhcchhhHHhhhcccCCCccccccceeeeeHHHHHHcCC-CCCCCccchHHHHHHHhhCCCeEEEecccc
Q 041333 239 QEMSLDYHFTVEQEVGSSTHAFFGFNGTAGVWRIAAVNEAGG-WKDRTTVEDMDLAVRASLKGWKFLYLGTVK 310 (513)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~gg-~~~~~~~ED~~l~~rl~~~G~~i~~~~~~~ 310 (513)
....... ......+..... ...+.-+|+|++++++-. ...+...-|.|+..++.+.|+++..+|-..
T Consensus 221 ~~~~~~~--l~~~~~~~~i~D---~~~Gfk~~~r~~~~~i~~~~~~~~~~fd~Ell~~a~~~g~~I~EvPv~~ 288 (333)
T PTZ00260 221 LMYGFHF--IVNTICGTNLKD---TQCGFKLFTRETARIIFPSLHLERWAFDIEIVMIAQKLNLPIAEVPVNW 288 (333)
T ss_pred HHHHHHH--HHHHHcCCCccc---CCCCeEEEeHHHHHHHhhhccccCccchHHHHHHHHHcCCCEEEEceee
Confidence 2211111 111111111111 123456899999987611 111224568999999999999999998643
No 59
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=99.85 E-value=3.7e-20 Score=173.75 Aligned_cols=199 Identities=19% Similarity=0.161 Sum_probs=135.1
Q ss_pred EEEeccCChHHHHHHHHHHHcCCC----CCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHH
Q 041333 101 VQIPMFNEREVYQLSIGAACGLSW----PSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGAL 176 (513)
Q Consensus 101 IiIP~yne~~~l~~~l~sl~~q~y----p~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~al 176 (513)
|+||+|||++.+.++|+++.+|.+ ++.+++| |+|+|+|+|.+.+ ++..+++ +..++++..+.+.| +++|+
T Consensus 1 iiip~yN~~~~l~~~l~~l~~~~~~~~~~~~eiiv-vdd~S~D~t~~~~-~~~~~~~---~~~i~~i~~~~n~G-~~~a~ 74 (211)
T cd04188 1 VVIPAYNEEKRLPPTLEEAVEYLEERPSFSYEIIV-VDDGSKDGTAEVA-RKLARKN---PALIRVLTLPKNRG-KGGAV 74 (211)
T ss_pred CEEcccChHHHHHHHHHHHHHHHhccCCCCEEEEE-EeCCCCCchHHHH-HHHHHhC---CCcEEEEEcccCCC-cHHHH
Confidence 689999999999999999998754 4555443 6677889887744 4333322 22357777777766 89999
Q ss_pred HHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCC----CchHHHHHHhhhcchhhHHhh
Q 041333 177 REGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNAD----ECLMTRLQEMSLDYHFTVEQE 252 (513)
Q Consensus 177 n~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~----~~~~~~~~~~~~~~~~~~~~~ 252 (513)
|.|++.| ++|+|+++|+|+.++|+++++++..+. +++.++|.|.......+ .++.............. ..
T Consensus 75 ~~g~~~a---~gd~i~~ld~D~~~~~~~l~~l~~~~~-~~~~~~v~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 148 (211)
T cd04188 75 RAGMLAA---RGDYILFADADLATPFEELEKLEEALK-TSGYDIAIGSRAHLASAAVVKRSWLRNLLGRGFNFLVR--LL 148 (211)
T ss_pred HHHHHHh---cCCEEEEEeCCCCCCHHHHHHHHHHHh-ccCCcEEEEEeeccCCcccccccHHHHHHHHHHHHHHH--HH
Confidence 9999999 999999999999999999999999973 44556666654433221 12332222211111100 00
Q ss_pred hcccCCCccccccceeeeeHHHHHHcCCCC-CCCccchHHHHHHHhhCCCeEEEecccccccccC
Q 041333 253 VGSSTHAFFGFNGTAGVWRIAAVNEAGGWK-DRTTVEDMDLAVRASLKGWKFLYLGTVKVKNELP 316 (513)
Q Consensus 253 ~~~~~~~~~~~~G~~~~~rr~~l~~~gg~~-~~~~~ED~~l~~rl~~~G~~i~~~~~~~~~~~~p 316 (513)
.+..... ...+..+++|++++++++.. .....+|.|+..|+.++|+++.++| +.+++.|
T Consensus 149 ~~~~~~d---~~~g~~~~~r~~~~~~~~~~~~~~~~~d~el~~r~~~~g~~~~~vp--i~~~~~~ 208 (211)
T cd04188 149 LGLGIKD---TQCGFKLFTRDAARRLFPRLHLERWAFDVELLVLARRLGYPIEEVP--VRWVEIP 208 (211)
T ss_pred cCCCCcc---cccCceeEcHHHHHHHHhhhhccceEeeHHHHHHHHHcCCeEEEcC--cceecCC
Confidence 1111111 12345789999999987543 3447899999999999999999998 4444444
No 60
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=99.84 E-value=3.2e-20 Score=167.80 Aligned_cols=154 Identities=23% Similarity=0.348 Sum_probs=128.8
Q ss_pred CCCChhHHHHHHHh-cccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcchh
Q 041333 169 KGYKAGALREGMKR-GYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYHF 247 (513)
Q Consensus 169 ~g~Ka~aln~gl~~-a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~ 247 (513)
...|.+|+..+++. + ++|++++.|+|+.++||+|.+++..+ ++|++++|++.....+. .++..++.......+.
T Consensus 15 ~N~Kv~nL~~~~~~~a---~~d~~~~~DsDi~v~p~~L~~lv~~l-~~p~vglVt~~~~~~~~-~~~~~~l~~~~~~~~~ 89 (175)
T PF13506_consen 15 CNPKVNNLAQGLEAGA---KYDYLVISDSDIRVPPDYLRELVAPL-ADPGVGLVTGLPRGVPA-RGFWSRLEAAFFNFLP 89 (175)
T ss_pred CChHHHHHHHHHHhhC---CCCEEEEECCCeeECHHHHHHHHHHH-hCCCCcEEEecccccCC-cCHHHHHHHHHHhHHH
Confidence 33699999999998 9 99999999999999999999999999 68999999998876665 4677776554443333
Q ss_pred hHHhhhcccCCCccccccceeeeeHHHHHHcCCCCC--CCccchHHHHHHHhhCCCeEEEecccccccccC----cCHHH
Q 041333 248 TVEQEVGSSTHAFFGFNGTAGVWRIAAVNEAGGWKD--RTTVEDMDLAVRASLKGWKFLYLGTVKVKNELP----STFKA 321 (513)
Q Consensus 248 ~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~gg~~~--~~~~ED~~l~~rl~~~G~~i~~~~~~~~~~~~p----~~~~~ 321 (513)
...+. .....+..|.++++||++++++|||+. +.++||+.++.+++++|+++...+.+++.+..| .++++
T Consensus 90 ~~~~a----~~~~~~~~G~~m~~rr~~L~~~GG~~~l~~~ladD~~l~~~~~~~G~~v~~~~~~v~~~~~~~~~~~s~~~ 165 (175)
T PF13506_consen 90 GVLQA----LGGAPFAWGGSMAFRREALEEIGGFEALADYLADDYALGRRLRARGYRVVLSPYPVVQTSVPRTLEDSFRD 165 (175)
T ss_pred HHHHH----hcCCCceecceeeeEHHHHHHcccHHHHhhhhhHHHHHHHHHHHCCCeEEEcchheeecccCccccccHHH
Confidence 33322 234445679999999999999999987 569999999999999999999999988877777 48999
Q ss_pred HHHHHHhhhh
Q 041333 322 YRYQQHRWSC 331 (513)
Q Consensus 322 ~~~Qr~RW~~ 331 (513)
+++++.||++
T Consensus 166 ~~~r~~RW~r 175 (175)
T PF13506_consen 166 FFRRQLRWAR 175 (175)
T ss_pred HHHHHHhhcC
Confidence 9999999985
No 61
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=99.83 E-value=6.4e-20 Score=180.06 Aligned_cols=200 Identities=16% Similarity=0.165 Sum_probs=135.4
Q ss_pred eccCCh-HHHHHHHHHHHcCCCCCCeeEEEEEeCCCch-hHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHH
Q 041333 104 PMFNER-EVYQLSIGAACGLSWPSDRLIIQVLDDSTDL-TIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMK 181 (513)
Q Consensus 104 P~yne~-~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~-t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~ 181 (513)
.+||++ +.+++|++|+.+|. +++ |+|+|+|+|+ +.+.+. +...++++++.++|.| .++|+|.|++
T Consensus 1 Vtyn~~~~~l~~~l~sl~~q~---~~i-iVVDN~S~~~~~~~~~~--------~~~~~i~~i~~~~N~G-~a~a~N~Gi~ 67 (281)
T TIGR01556 1 VTFNPDLEHLGELITSLPKQV---DRI-IAVDNSPHSDQPLKNAR--------LRGQKIALIHLGDNQG-IAGAQNQGLD 67 (281)
T ss_pred CccCccHHHHHHHHHHHHhcC---CEE-EEEECcCCCcHhHHHHh--------ccCCCeEEEECCCCcc-hHHHHHHHHH
Confidence 379975 89999999999985 333 3244445443 433332 2346789998888877 7999999999
Q ss_pred hcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCC-CeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHhhhcccCCCc
Q 041333 182 RGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNP-QLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQEVGSSTHAF 260 (513)
Q Consensus 182 ~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~-~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (513)
.|...++|||+++|+|+.++|+++++++..+++++ +++++++.....+. ............... .............
T Consensus 68 ~a~~~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 145 (281)
T TIGR01556 68 ASFRRGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGT-SRRLPAIHLDGLLLR-QISLDGLTTPQKT 145 (281)
T ss_pred HHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCC-cccCCceeeccccee-eecccccCCceec
Confidence 98555789999999999999999999999986555 77787766432211 111000000000000 0000000011111
Q ss_pred cccccceeeeeHHHHHHcCCCCCCC--ccchHHHHHHHhhCCCeEEEecccccccccCcC
Q 041333 261 FGFNGTAGVWRIAAVNEAGGWKDRT--TVEDMDLAVRASLKGWKFLYLGTVKVKNELPST 318 (513)
Q Consensus 261 ~~~~G~~~~~rr~~l~~~gg~~~~~--~~ED~~l~~rl~~~G~~i~~~~~~~~~~~~p~~ 318 (513)
....++++++||++++++|+|+++. ..||.|+++|+.++|+++.++|++..+|....+
T Consensus 146 ~~~~~sg~li~~~~~~~iG~fde~~fi~~~D~e~~~R~~~~G~~i~~~~~~~~~H~~g~~ 205 (281)
T TIGR01556 146 SFLISSGCLITREVYQRLGMMDEELFIDHVDTEWSLRAQNYGIPLYIDPDIVLEHRIGDS 205 (281)
T ss_pred cEEEcCcceeeHHHHHHhCCccHhhcccchHHHHHHHHHHCCCEEEEeCCEEEEEecCCc
Confidence 1123556789999999999999975 569999999999999999999999998876544
No 62
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=99.81 E-value=1.4e-18 Score=170.22 Aligned_cols=204 Identities=20% Similarity=0.281 Sum_probs=132.2
Q ss_pred EEEEeccCCh------HHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCC--CC
Q 041333 100 LVQIPMFNER------EVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRK--GY 171 (513)
Q Consensus 100 sIiIP~yne~------~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~--g~ 171 (513)
|||||++|+. +.+..|+.++..+.-+ ..++|+|+|++++++....+++.+++ .....++..+.+. -+
T Consensus 1 SiIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~-~~~eiIvvd~~s~~~~~~~l~~~~~~----~~~~~~i~~~~~~~~f~ 75 (281)
T PF10111_consen 1 SIIIPVRNRSERPDILERLRNCLESLSQFQSD-PDFEIIVVDDGSSDEFDEELKKLCEK----NGFIRYIRHEDNGEPFS 75 (281)
T ss_pred CEEEEecCCccchHHHHHHHHHHHHHHhcCCC-CCEEEEEEECCCchhHHHHHHHHHhc----cCceEEEEcCCCCCCcC
Confidence 6999999998 3456667777764333 34555566665554442233333332 2333366554333 25
Q ss_pred ChhHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHH---HHhcCCCeeEEEeeEEEecCCCchHHHHHHhh-hcchh
Q 041333 172 KAGALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIP---FLVHNPQLALVQARWEFVNADECLMTRLQEMS-LDYHF 247 (513)
Q Consensus 172 Ka~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~---~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~-~~~~~ 247 (513)
++.|+|.|++.| ++|+|+++|+|+.++|+++++++. .+..+++ ..+..+..+.+.+.+. ...... .....
T Consensus 76 ~a~arN~g~~~A---~~d~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~-~~~~~p~~yl~~~~~~--~~~~~~~~~~~~ 149 (281)
T PF10111_consen 76 RAKARNIGAKYA---RGDYLIFLDADCIPSPDFIEKLLNHVKKLDKNPN-AFLVYPCLYLSEEGSE--KFYSQFKNLWDH 149 (281)
T ss_pred HHHHHHHHHHHc---CCCEEEEEcCCeeeCHHHHHHHHHHHHHHhcCCC-ceEEEeeeeccchhhH--HHhhcchhcchH
Confidence 899999999999 999999999999999999999999 5644443 3444444444433221 111110 00111
Q ss_pred hHHh---hhcccCCCccccccceeeeeHHHHHHcCCCCCCC---ccchHHHHHHHhhCCCeEEEecccccccc
Q 041333 248 TVEQ---EVGSSTHAFFGFNGTAGVWRIAAVNEAGGWKDRT---TVEDMDLAVRASLKGWKFLYLGTVKVKNE 314 (513)
Q Consensus 248 ~~~~---~~~~~~~~~~~~~G~~~~~rr~~l~~~gg~~~~~---~~ED~~l~~rl~~~G~~i~~~~~~~~~~~ 314 (513)
.... ...+.........|++++++|+.+.++||||++. ..||.|++.|+.+.|.++...++..+++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~s~~~~i~r~~f~~iGGfDE~f~G~G~ED~D~~~RL~~~~~~~~~~~~~~~~~~ 222 (281)
T PF10111_consen 150 EFLESFISGKNSLWEFIAFASSCFLINREDFLEIGGFDERFRGWGYEDIDFGYRLKKAGYKFKRSPDYLVYHS 222 (281)
T ss_pred HHHHHHhhccccccccccccceEEEEEHHHHHHhCCCCccccCCCcchHHHHHHHHHcCCcEecChHHhcccc
Confidence 1110 1111111122345799999999999999999975 68999999999999999999999888653
No 63
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=99.81 E-value=2.7e-20 Score=166.85 Aligned_cols=169 Identities=24% Similarity=0.296 Sum_probs=113.4
Q ss_pred EEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHH
Q 041333 100 LVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREG 179 (513)
Q Consensus 100 sIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~g 179 (513)
||+||+||+++.+.++|+|+.+|.+++.+++| |+|+|+|++.+. +++ +.+.+.++++++++++.| ++.++|.|
T Consensus 1 Svvip~~n~~~~l~~~l~sl~~q~~~~~eiiv-vdd~s~d~~~~~-~~~----~~~~~~~i~~i~~~~n~g-~~~~~n~~ 73 (169)
T PF00535_consen 1 SVVIPTYNEAEYLERTLESLLKQTDPDFEIIV-VDDGSTDETEEI-LEE----YAESDPNIRYIRNPENLG-FSAARNRG 73 (169)
T ss_dssp EEEEEESS-TTTHHHHHHHHHHHSGCEEEEEE-EECS-SSSHHHH-HHH----HHCCSTTEEEEEHCCCSH-HHHHHHHH
T ss_pred CEEEEeeCCHHHHHHHHHHHhhccCCCEEEEE-eccccccccccc-ccc----cccccccccccccccccc-cccccccc
Confidence 79999999999999999999999777666544 666677777664 432 333578999999998876 89999999
Q ss_pred HHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHhhhcccCCC
Q 041333 180 MKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQEVGSSTHA 259 (513)
Q Consensus 180 l~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (513)
++.+ ++||++++|+|+.++|+++++++..+++++. +++.+.......+............................
T Consensus 74 ~~~a---~~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (169)
T PF00535_consen 74 IKHA---KGEYILFLDDDDIISPDWLEELVEALEKNPP-DVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFWK 149 (169)
T ss_dssp HHH-----SSEEEEEETTEEE-TTHHHHHHHHHHHCTT-EEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHSTT
T ss_pred cccc---ceeEEEEeCCCceEcHHHHHHHHHHHHhCCC-cEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcCC
Confidence 9999 9999999999999999999999999965444 44444444333322211110000000011111122333344
Q ss_pred ccccccceeeeeHHHHHHcC
Q 041333 260 FFGFNGTAGVWRIAAVNEAG 279 (513)
Q Consensus 260 ~~~~~G~~~~~rr~~l~~~g 279 (513)
....+|++.++||++++++|
T Consensus 150 ~~~~~~~~~~~rr~~~~~~~ 169 (169)
T PF00535_consen 150 ISFFIGSCALFRRSVFEEIG 169 (169)
T ss_dssp SSEESSSCEEEEEHHHHHCH
T ss_pred cccccccEEEEEHHHHHhhC
Confidence 44577999999999999985
No 64
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=99.80 E-value=7.3e-19 Score=161.06 Aligned_cols=179 Identities=19% Similarity=0.128 Sum_probs=121.9
Q ss_pred EEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEe-CCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHH
Q 041333 101 VQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLD-DSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREG 179 (513)
Q Consensus 101 IiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~D-ds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~g 179 (513)
|+||+||+++.+.+||+|+.+|.++....+|+|+| +|+|++.+. ++...+ +...++++..+++.| +++|+|.|
T Consensus 1 iii~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~-~~~~~~----~~~~~~~~~~~~n~G-~~~a~n~g 74 (185)
T cd04179 1 VVIPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEI-ARELAA----RVPRVRVIRLSRNFG-KGAAVRAG 74 (185)
T ss_pred CeecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHH-HHHHHH----hCCCeEEEEccCCCC-ccHHHHHH
Confidence 68999999999999999999998732233444454 577777664 433322 334567777777777 89999999
Q ss_pred HHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCC--CchHHHHHHhhhcchhhHHhhhcccC
Q 041333 180 MKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNAD--ECLMTRLQEMSLDYHFTVEQEVGSST 257 (513)
Q Consensus 180 l~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (513)
++.+ ++|+++++|+|+.++|++|++++..+ .+++.++|.+.....+.. .....+........ ..... ..
T Consensus 75 ~~~a---~gd~i~~lD~D~~~~~~~l~~l~~~~-~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~ 145 (185)
T cd04179 75 FKAA---RGDIVVTMDADLQHPPEDIPKLLEKL-LEGGADVVIGSRFVRGGGAGMPLLRRLGSRLFNF--LIRLL---LG 145 (185)
T ss_pred HHHh---cCCEEEEEeCCCCCCHHHHHHHHHHH-hccCCcEEEEEeecCCCcccchHHHHHHHHHHHH--HHHHH---cC
Confidence 9999 99999999999999999999999986 345677777776544432 22333222111111 11110 11
Q ss_pred CCccccccceeeeeHHHHHHcC--CCCCCCccchHHHHHH
Q 041333 258 HAFFGFNGTAGVWRIAAVNEAG--GWKDRTTVEDMDLAVR 295 (513)
Q Consensus 258 ~~~~~~~G~~~~~rr~~l~~~g--g~~~~~~~ED~~l~~r 295 (513)
.......|++.++||++++++| +++ ....+|+++.+|
T Consensus 146 ~~~~~~~~~~~~~~r~~~~~i~~~~~~-~~~~~~~~~~~~ 184 (185)
T cd04179 146 VRISDTQSGFRLFRREVLEALLSLLES-NGFEFGLELLVG 184 (185)
T ss_pred CCCcCCCCceeeeHHHHHHHHHhhccc-cCcceeeEeeec
Confidence 2223355888999999999994 443 346677777665
No 65
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=99.79 E-value=3e-18 Score=156.63 Aligned_cols=175 Identities=18% Similarity=0.139 Sum_probs=121.1
Q ss_pred EEEeccCChHHHHHHHHHHHcC---CCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHH
Q 041333 101 VQIPMFNEREVYQLSIGAACGL---SWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALR 177 (513)
Q Consensus 101 IiIP~yne~~~l~~~l~sl~~q---~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln 177 (513)
|+||+|||++.+.++++++.++ .+++.+++| |+|+|+|++.+.+ +.. ..+..+++++...++.| +++|+|
T Consensus 1 viIp~~n~~~~l~~~l~sl~~~~~~~~~~~eiiv-vdd~s~d~t~~~~-~~~----~~~~~~i~~i~~~~n~G-~~~a~n 73 (181)
T cd04187 1 IVVPVYNEEENLPELYERLKAVLESLGYDYEIIF-VDDGSTDRTLEIL-REL----AARDPRVKVIRLSRNFG-QQAALL 73 (181)
T ss_pred CEEeecCchhhHHHHHHHHHHHHHhcCCCeEEEE-EeCCCCccHHHHH-HHH----HhhCCCEEEEEecCCCC-cHHHHH
Confidence 6899999999999998888654 345555444 6677888887743 332 23345788887776666 999999
Q ss_pred HHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHhhhcccC
Q 041333 178 EGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQEVGSST 257 (513)
Q Consensus 178 ~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (513)
.|++.+ ++|+++++|+|+.++|+++++++..+ +++.++|.+.....+ .++..+............ .. .
T Consensus 74 ~g~~~a---~~d~i~~~D~D~~~~~~~l~~l~~~~--~~~~~~v~g~~~~~~--~~~~~~~~~~~~~~~~~~--~~---~ 141 (181)
T cd04187 74 AGLDHA---RGDAVITMDADLQDPPELIPEMLAKW--EEGYDVVYGVRKNRK--ESWLKRLTSKLFYRLINK--LS---G 141 (181)
T ss_pred HHHHhc---CCCEEEEEeCCCCCCHHHHHHHHHHH--hCCCcEEEEEecCCc--chHHHHHHHHHHHHHHHH--Hc---C
Confidence 999999 99999999999999999999999986 345566777655443 333333222111111110 01 1
Q ss_pred CCccccccceeeeeHHHHHHcCCCCCCC-ccchHHHHH
Q 041333 258 HAFFGFNGTAGVWRIAAVNEAGGWKDRT-TVEDMDLAV 294 (513)
Q Consensus 258 ~~~~~~~G~~~~~rr~~l~~~gg~~~~~-~~ED~~l~~ 294 (513)
.......|++.++||++++++|+|++.. ..+|.+...
T Consensus 142 ~~~~~~~~~~~~~~r~~~~~i~~~d~~~~~~~~~~~~~ 179 (181)
T cd04187 142 VDIPDNGGDFRLMDRKVVDALLLLPERHRFLRGLIAWV 179 (181)
T ss_pred CCCCCCCCCEEEEcHHHHHHHHhcCCCCccHHHHHHHh
Confidence 1122245778899999999999999865 666666544
No 66
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=99.76 E-value=1.4e-17 Score=164.11 Aligned_cols=197 Identities=19% Similarity=0.133 Sum_probs=125.6
Q ss_pred CCCCcEEEEEeccCChHHHHHHHHHHHcCCC-C-CCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEE-cCCCCC
Q 041333 94 SSYPMVLVQIPMFNEREVYQLSIGAACGLSW-P-SDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEV-RDNRKG 170 (513)
Q Consensus 94 ~~~P~VsIiIP~yne~~~l~~~l~sl~~q~y-p-~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~-~~~~~g 170 (513)
...|+|||+||+|||++.|.++++++.+|.+ + .++++ +|+|+|+|+|.+.+.+ ...+.. .....+. .+.+.
T Consensus 28 ~~~~~vSVVIPayNee~~I~~~l~sl~~~~~~~~~~EII-VVDDgStD~T~~ia~~-~~~~v~---~~~~~~~~~~~n~- 101 (306)
T PRK13915 28 KAGRTVSVVLPALNEEETVGKVVDSIRPLLMEPLVDELI-VIDSGSTDATAERAAA-AGARVV---SREEILPELPPRP- 101 (306)
T ss_pred cCCCCEEEEEecCCcHHHHHHHHHHHHHHhccCCCcEEE-EEeCCCccHHHHHHHH-hcchhh---cchhhhhccccCC-
Confidence 4568999999999999999999999998764 2 23443 3677799999885433 111100 0011111 13344
Q ss_pred CChhHHHHHHHhcccCCCcEEEEEcCCCC-CChHHHHHHHHHHhcCCCeeEEEeeEEEec--------CCCchHHHHHHh
Q 041333 171 YKAGALREGMKRGYVKSCDFVVIFDADFQ-PESDFLTRTIPFLVHNPQLALVQARWEFVN--------ADECLMTRLQEM 241 (513)
Q Consensus 171 ~Ka~aln~gl~~a~~~~~d~I~~lDaD~~-~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n--------~~~~~~~~~~~~ 241 (513)
||+.|+|.|++.+ ++|+|+++|+|+. ++|+++.+++..+..+|++++|.+.....- ......++...
T Consensus 102 Gkg~A~~~g~~~a---~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~~~r~~~~~~~~~~~~~gr~~~~~~- 177 (306)
T PRK13915 102 GKGEALWRSLAAT---TGDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKAFYRRPLRVSGGVDATGGGRVTELVA- 177 (306)
T ss_pred CHHHHHHHHHHhc---CCCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEEEeccccccccccCcCCCCchHHHHH-
Confidence 4999999999999 9999999999997 899999999999866899999988532110 00111111110
Q ss_pred hhcchhhHHhhhcccCCCccccccceeeeeHHHHHHcCCCCCCCccchHHHHHHHhh-CCC-eEEEec
Q 041333 242 SLDYHFTVEQEVGSSTHAFFGFNGTAGVWRIAAVNEAGGWKDRTTVEDMDLAVRASL-KGW-KFLYLG 307 (513)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~gg~~~~~~~ED~~l~~rl~~-~G~-~i~~~~ 307 (513)
...+........... ... ++..++||++++++. ++++ .+.|.++...+.+ .|. ++..++
T Consensus 178 --~~l~~~~~~~l~~i~--dp~-sG~~a~rr~~l~~l~-~~~~-yg~e~~~l~~~~~~~g~~~i~~V~ 238 (306)
T PRK13915 178 --RPLLNLLRPELAGFV--QPL-GGEYAGRRELLESLP-FVPG-YGVEIGLLIDTLDRLGLDAIAQVD 238 (306)
T ss_pred --HHHHHHHHHhhhccc--Ccc-hHhHHHHHHHHHhCC-CCCC-CeehHHHHHHHHHHhCcCceEEEE
Confidence 000000000001111 112 335789999999984 6543 5668888888774 576 666665
No 67
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=99.76 E-value=5.4e-18 Score=161.26 Aligned_cols=232 Identities=17% Similarity=0.198 Sum_probs=183.1
Q ss_pred CCCCcEEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCC--C
Q 041333 94 SSYPMVLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKG--Y 171 (513)
Q Consensus 94 ~~~P~VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g--~ 171 (513)
+.+|.|||+.|..+-++++...++|....+|++.|+.. ++++++|+..+ +++...++|+ .++.+.....+..| .
T Consensus 82 ~~LPgVSiikPl~G~d~nl~~Nlesffts~Y~~~ElLf-cv~s~eDpAi~-vv~~Ll~kyp--~VdAklf~gG~~vg~np 157 (431)
T KOG2547|consen 82 PKLPGVSIIKPLKGVDPNLYHNLESFFTSQYHKYELLF-CVESSEDPAIE-VVERLLKKYP--NVDAKLFFGGEKVGLNP 157 (431)
T ss_pred CCCCCceEEeecccCCchhHHhHHHHHhhccCceEEEE-EEccCCCcHHH-HHHHHHhhCC--CcceEEEEcccccccCh
Confidence 36999999999999999999999999999999887755 78888888887 6777788885 44455554444433 5
Q ss_pred ChhHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHh
Q 041333 172 KAGALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQ 251 (513)
Q Consensus 172 Ka~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ 251 (513)
|.+|+.-|.+.| ++|+|++.|+|..+.||.+..++..++++++.+.|.+.....+.+. +-..+....+...+.+..
T Consensus 158 KInN~mpgy~~a---~ydlvlisDsgI~m~pdtildm~t~M~shekmalvtq~py~~dr~G-f~atle~~~fgTsh~r~y 233 (431)
T KOG2547|consen 158 KINNMMPGYRAA---KYDLVLISDSGIFMKPDTILDMATTMMSHEKMALVTQTPYCKDRQG-FDATLEQVYFGTSHPRIY 233 (431)
T ss_pred hhhccCHHHHHh---cCCEEEEecCCeeecCchHHHHHHhhhcccceeeecCCceeecccc-chhhhhheeeccCCceEE
Confidence 999999999999 9999999999999999999999999988889999988776666543 222222222222222222
Q ss_pred hhcccCCCccccccceeeeeHHHHHHcCCCCCC--CccchHHHHHHHhhCCCeEEEecccccccccCcCHHHHHHHHHhh
Q 041333 252 EVGSSTHAFFGFNGTAGVWRIAAVNEAGGWKDR--TTVEDMDLAVRASLKGWKFLYLGTVKVKNELPSTFKAYRYQQHRW 329 (513)
Q Consensus 252 ~~~~~~~~~~~~~G~~~~~rr~~l~~~gg~~~~--~~~ED~~l~~rl~~~G~~i~~~~~~~~~~~~p~~~~~~~~Qr~RW 329 (513)
.. ...-++.|.+|-.++.||+++++.||.... .+.||+.....+..+|||..+...+.-.+....+...+.+|-.||
T Consensus 234 l~-~n~~~~~c~tgms~~mrK~~ld~~ggi~~f~~yLaedyFaaksllSRG~ksaist~palQnSas~~mssf~~Ri~rw 312 (431)
T KOG2547|consen 234 LS-GNVLGFNCSTGMSSMMRKEALDECGGISAFGGYLAEDYFAAKSLLSRGWKSAISTHPALQNSASVTMSSFLDRIIRW 312 (431)
T ss_pred Ec-cccccccccccHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhHHHHHHHHHHHh
Confidence 22 223345567799999999999999998763 489999999999999999999988888888888999999999999
Q ss_pred hhchh
Q 041333 330 SCGPA 334 (513)
Q Consensus 330 ~~G~~ 334 (513)
.+=.+
T Consensus 313 vkLri 317 (431)
T KOG2547|consen 313 VKLRI 317 (431)
T ss_pred hhhhh
Confidence 86544
No 68
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=99.76 E-value=2e-15 Score=150.45 Aligned_cols=192 Identities=16% Similarity=0.204 Sum_probs=125.0
Q ss_pred CCcEEEEEeccCChHHHHHHHHHHH---cCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCC
Q 041333 96 YPMVLVQIPMFNEREVYQLSIGAAC---GLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYK 172 (513)
Q Consensus 96 ~P~VsIiIP~yne~~~l~~~l~sl~---~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~K 172 (513)
.+++||+||+|||++.+.++++++. +|..++.|+ |+|+|+|+|+|.+.+.+ ..+ ..+.+++.+..+.+.| |
T Consensus 5 ~~~vSVVIP~yNE~~~i~~~l~~l~~~~~~~~~~~EI-IvVDDgS~D~T~~il~~-~~~---~~~~~v~~i~~~~n~G-~ 78 (325)
T PRK10714 5 IKKVSVVIPVYNEQESLPELIRRTTAACESLGKEYEI-LLIDDGSSDNSAEMLVE-AAQ---APDSHIVAILLNRNYG-Q 78 (325)
T ss_pred CCeEEEEEcccCchhhHHHHHHHHHHHHHhCCCCEEE-EEEeCCCCCcHHHHHHH-HHh---hcCCcEEEEEeCCCCC-H
Confidence 3579999999999999999998875 344444444 33777799999885543 222 1245666665555555 9
Q ss_pred hhHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHhh
Q 041333 173 AGALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQE 252 (513)
Q Consensus 173 a~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 252 (513)
+.|+|.|+++| +||+++++|+|.+.+|+.+.++++.+++ +.++|.+... +...++..+.....+... ....
T Consensus 79 ~~A~~~G~~~A---~gd~vv~~DaD~q~~p~~i~~l~~~~~~--~~DvV~~~r~--~~~~~~~r~~~s~~~~~l--~~~~ 149 (325)
T PRK10714 79 HSAIMAGFSHV---TGDLIITLDADLQNPPEEIPRLVAKADE--GYDVVGTVRQ--NRQDSWFRKTASKMINRL--IQRT 149 (325)
T ss_pred HHHHHHHHHhC---CCCEEEEECCCCCCCHHHHHHHHHHHHh--hCCEEEEEEc--CCCCcHHHHHHHHHHHHH--HHHH
Confidence 99999999999 9999999999999999999999999843 3566766543 222345444332211111 1111
Q ss_pred hcccCCCccccccceeeeeHHHHHHcCCCCCCCccchHHHHHHHhhCCCeEEEeccc
Q 041333 253 VGSSTHAFFGFNGTAGVWRIAAVNEAGGWKDRTTVEDMDLAVRASLKGWKFLYLGTV 309 (513)
Q Consensus 253 ~~~~~~~~~~~~G~~~~~rr~~l~~~gg~~~~~~~ED~~l~~rl~~~G~~i~~~~~~ 309 (513)
.+..... ..+..-++||++++++-..++.. ..+...+...|+++..+|-.
T Consensus 150 ~g~~~~d---~~~gfr~~~r~~~~~l~~~~~~~----~~~~~l~~~~g~~i~evpv~ 199 (325)
T PRK10714 150 TGKAMGD---YGCMLRAYRRHIVDAMLHCHERS----TFIPILANTFARRAIEIPVH 199 (325)
T ss_pred cCCCCCC---CCcCeEEEcHHHHHHHHHCCCCc----cHHHHHHHHcCCCEEEEEeE
Confidence 1111111 12334589999999875443322 22334556679998888754
No 69
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=99.69 E-value=8.3e-16 Score=134.90 Aligned_cols=153 Identities=25% Similarity=0.356 Sum_probs=120.7
Q ss_pred EEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHH
Q 041333 101 VQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGM 180 (513)
Q Consensus 101 IiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl 180 (513)
|+||++|+.+.+.++++|+.+++++..++.| ++|+++|++.+.+.+ ..+ ....+.....+.+.| +++++|.++
T Consensus 1 iii~~~~~~~~l~~~l~s~~~~~~~~~~i~i-~~~~~~~~~~~~~~~-~~~----~~~~~~~~~~~~~~g-~~~~~~~~~ 73 (156)
T cd00761 1 VIIPAYNEEPYLERCLESLLAQTYPNFEVIV-VDDGSTDGTLEILEE-YAK----KDPRVIRVINEENQG-LAAARNAGL 73 (156)
T ss_pred CEEeecCcHHHHHHHHHHHHhCCccceEEEE-EeCCCCccHHHHHHH-HHh----cCCCeEEEEecCCCC-hHHHHHHHH
Confidence 6899999999999999999999986655433 555566666554332 211 123455555555555 899999999
Q ss_pred HhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHhhhcccCCCc
Q 041333 181 KRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQEVGSSTHAF 260 (513)
Q Consensus 181 ~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (513)
+.+ ++|+++++|+|..++|+++..++..+..+++.+++++.
T Consensus 74 ~~~---~~d~v~~~d~D~~~~~~~~~~~~~~~~~~~~~~~v~~~------------------------------------ 114 (156)
T cd00761 74 KAA---RGEYILFLDADDLLLPDWLERLVAELLADPEADAVGGP------------------------------------ 114 (156)
T ss_pred HHh---cCCEEEEECCCCccCccHHHHHHHHHhcCCCceEEecc------------------------------------
Confidence 999 99999999999999999999986666578888888776
Q ss_pred cccccceeeeeHHHHHHcCCCCCCCc--cchHHHHHHHhhCCCeEE
Q 041333 261 FGFNGTAGVWRIAAVNEAGGWKDRTT--VEDMDLAVRASLKGWKFL 304 (513)
Q Consensus 261 ~~~~G~~~~~rr~~l~~~gg~~~~~~--~ED~~l~~rl~~~G~~i~ 304 (513)
++++++++.++++|++++... .||.++..++...|++..
T Consensus 115 -----~~~~~~~~~~~~~~~~~~~~~~~~ed~~~~~~~~~~g~~~~ 155 (156)
T cd00761 115 -----GNLLFRRELLEEIGGFDEALLSGEEDDDFLLRLLRGGKVAF 155 (156)
T ss_pred -----chheeeHHHHHHhCCcchHhcCCcchHHHHHHHHhhccccc
Confidence 567999999999999988653 599999999999887653
No 70
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=99.67 E-value=4e-15 Score=128.65 Aligned_cols=201 Identities=19% Similarity=0.202 Sum_probs=133.6
Q ss_pred CcEEEEEeccCChHHHHHH---HHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCCh
Q 041333 97 PMVLVQIPMFNEREVYQLS---IGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKA 173 (513)
Q Consensus 97 P~VsIiIP~yne~~~l~~~---l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka 173 (513)
++.||++|+|||.+++.-+ +.....+.--+.+++| |+|+|.|.|.+ .+++..+.+ .+.++....|.+..| -.
T Consensus 3 ~kYsvilPtYnEk~Nlpi~~~li~~~~~e~~~~~eiIi-vDD~SpDGt~~-~a~~L~k~y--g~d~i~l~pR~~klG-Lg 77 (238)
T KOG2978|consen 3 IKYSVILPTYNEKENLPIITRLIAKYMSEEGKKYEIII-VDDASPDGTQE-VAKALQKIY--GEDNILLKPRTKKLG-LG 77 (238)
T ss_pred cceeEEeccccCCCCCeeeHHHHHhhhhhhcCceEEEE-EeCCCCCccHH-HHHHHHHHh--CCCcEEEEeccCccc-ch
Confidence 5689999999999666533 3333333333345444 77779999988 455555544 457888888888777 78
Q ss_pred hHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCC-ch--HHHHHHhhhcchhhHH
Q 041333 174 GALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADE-CL--MTRLQEMSLDYHFTVE 250 (513)
Q Consensus 174 ~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~-~~--~~~~~~~~~~~~~~~~ 250 (513)
.|.-.|+++| +|||++++|||-..+|.++.++.+.. ++.+.++|.|.....+..- .| ..+.....-+..-...
T Consensus 78 tAy~hgl~~a---~g~fiviMDaDlsHhPk~ipe~i~lq-~~~~~div~GTRYa~~ggV~gW~mkRk~IS~gAn~la~~l 153 (238)
T KOG2978|consen 78 TAYIHGLKHA---TGDFIVIMDADLSHHPKFIPEFIRLQ-KEGNYDIVLGTRYAGGGGVYGWDMKRKIISRGANFLARIL 153 (238)
T ss_pred HHHHhhhhhc---cCCeEEEEeCccCCCchhHHHHHHHh-hccCcceeeeeeEcCCCceecchhhHHHHhhhhHHHHHHh
Confidence 8999999999 99999999999999999999999876 5667788887765443321 11 1111111111100000
Q ss_pred hhhcccCCCccccccceeeeeHHHHHHcCCC-CCCCccchHHHHHHHhhCCCeEEEeccccc
Q 041333 251 QEVGSSTHAFFGFNGTAGVWRIAAVNEAGGW-KDRTTVEDMDLAVRASLKGWKFLYLGTVKV 311 (513)
Q Consensus 251 ~~~~~~~~~~~~~~G~~~~~rr~~l~~~gg~-~~~~~~ED~~l~~rl~~~G~~i~~~~~~~~ 311 (513)
...+....+|++.++||++++..-.= ...-..--+|+..|+.++|+.+.-+|-+.+
T Consensus 154 -----l~~~~sdltGsFrLykk~vl~~li~e~vSkGyvfqmEll~ra~~~~y~IgEvPitFv 210 (238)
T KOG2978|consen 154 -----LNPGVSDLTGSFRLYKKEVLEKLIEESVSKGYVFQMELLARARQHGYTIGEVPITFV 210 (238)
T ss_pred -----ccCCCccCcceeeeehHHHHHhhHHHhhccchhhhHHHHHhccccCceEeecceEEE
Confidence 00122236799999999999764100 011134568899999999999988776544
No 71
>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]
Probab=99.65 E-value=3.7e-15 Score=158.46 Aligned_cols=147 Identities=18% Similarity=0.287 Sum_probs=130.6
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHhhhcccCCCcccccc
Q 041333 186 KSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQEVGSSTHAFFGFNG 265 (513)
Q Consensus 186 ~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 265 (513)
+.-++|+++|+|+.+.|+.+.++++.|+.||++|+++| +..|...+|+...|.+++...+.......+..+.+.|.+|
T Consensus 439 ~~v~~il~vD~dT~~~P~ai~~lv~~f~~dp~VggaCG--~I~~~~~~w~v~~Q~FEY~Ish~l~Ka~ESvFG~VsclPG 516 (862)
T KOG2571|consen 439 PSVDYILVVDADTRLDPDALYHLVKVFDEDPQVGGACG--RILNKGGSWVVAYQNFEYAISHNLQKATESVFGCVSCLPG 516 (862)
T ss_pred CcceEEEEecCCCccCcHHHHHHHHHhccCcccceecc--ccccCCCceEEeHHHHHHHHHHHHHHhhhhhceeEEecCc
Confidence 45678899999999999999999999999999999999 4557777899999999999999998888999999999999
Q ss_pred ceeeeeHHHHHHcC--C-----CC------CCCccchHHHHHHHhhCCCeEEEecccccccccCcCHHHHHHHHHhhhhc
Q 041333 266 TAGVWRIAAVNEAG--G-----WK------DRTTVEDMDLAVRASLKGWKFLYLGTVKVKNELPSTFKAYRYQQHRWSCG 332 (513)
Q Consensus 266 ~~~~~rr~~l~~~g--g-----~~------~~~~~ED~~l~~rl~~~G~~i~~~~~~~~~~~~p~~~~~~~~Qr~RW~~G 332 (513)
+.++||-+++.+-- . +. -...+||.-|+.++..+||++.|++.+.+.++.|+++.++..||+||.+|
T Consensus 517 cfs~yR~~aL~~~~~~~~y~~~~~~~~~~~~~~~geDR~L~~~llskgy~l~Y~a~s~a~t~~Pe~~~efl~QrrRW~~s 596 (862)
T KOG2571|consen 517 CFSLYRASALMDQFVEYFYGEKFSGPRHGIQYSLGEDRWLCTLLLSKGYRLKYVAASDAETEAPESFLEFLNQRRRWLNS 596 (862)
T ss_pred hhHHHHHHHHhcchHHhhhchhhcCcccccccccchhHHHHHHHHhccceeeeeccccccccCcHhHHHHHHHhhhhccc
Confidence 99999998886532 0 00 01289999999999999999999999999999999999999999999999
Q ss_pred hh
Q 041333 333 PA 334 (513)
Q Consensus 333 ~~ 334 (513)
.+
T Consensus 597 ~f 598 (862)
T KOG2571|consen 597 IF 598 (862)
T ss_pred ch
Confidence 44
No 72
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=99.55 E-value=8.6e-14 Score=132.27 Aligned_cols=105 Identities=20% Similarity=0.161 Sum_probs=84.4
Q ss_pred cEEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHH
Q 041333 98 MVLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALR 177 (513)
Q Consensus 98 ~VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln 177 (513)
+|||+||+|||++.+++||+|+..|. ++++| |+|+|+|+|.+.+.+ .++++++. .+.| .+.++|
T Consensus 1 ~isvii~~~Ne~~~l~~~l~sl~~~~---~eiiv-vD~gStD~t~~i~~~----------~~~~v~~~-~~~g-~~~~~n 64 (229)
T cd02511 1 TLSVVIITKNEERNIERCLESVKWAV---DEIIV-VDSGSTDRTVEIAKE----------YGAKVYQR-WWDG-FGAQRN 64 (229)
T ss_pred CEEEEEEeCCcHHHHHHHHHHHhccc---CEEEE-EeCCCCccHHHHHHH----------cCCEEEEC-CCCC-hHHHHH
Confidence 48999999999999999999998873 34443 777799998874421 34555655 4444 899999
Q ss_pred HHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEE
Q 041333 178 EGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALV 221 (513)
Q Consensus 178 ~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V 221 (513)
.|++.+ ++|+|+++|+|..++|++++++...++++|..+..
T Consensus 65 ~~~~~a---~~d~vl~lDaD~~~~~~~~~~l~~~~~~~~~~~~~ 105 (229)
T cd02511 65 FALELA---TNDWVLSLDADERLTPELADEILALLATDDYDGYY 105 (229)
T ss_pred HHHHhC---CCCEEEEEeCCcCcCHHHHHHHHHHHhCCCCcEEE
Confidence 999999 99999999999999999999999999666654433
No 73
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.45 E-value=5.6e-13 Score=123.83 Aligned_cols=106 Identities=26% Similarity=0.302 Sum_probs=83.9
Q ss_pred CCcEEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhH
Q 041333 96 YPMVLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGA 175 (513)
Q Consensus 96 ~P~VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~a 175 (513)
.|.+||+||+||+++.+.++|+|+++|++++.+ +|+|+|+|+|+|.+.+.+ ... +..++.......+.| ++.|
T Consensus 2 ~~~~siiip~~n~~~~l~~~l~s~~~q~~~~~e-iivvddgs~d~t~~~~~~-~~~----~~~~~~~~~~~~~~g-~~~~ 74 (291)
T COG0463 2 MPKVSVVIPTYNEEEYLPEALESLLNQTYKDFE-IIVVDDGSTDGTTEIAIE-YGA----KDVRVIRLINERNGG-LGAA 74 (291)
T ss_pred CccEEEEEeccchhhhHHHHHHHHHhhhhcceE-EEEEeCCCCCChHHHHHH-Hhh----hcceEEEeecccCCC-hHHH
Confidence 578999999999999999999999999999866 454777899999885543 221 122344444454555 8999
Q ss_pred HHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHH
Q 041333 176 LREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFL 212 (513)
Q Consensus 176 ln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~ 212 (513)
+|.|+..+ .+|++.++|+|.. +++.+..+....
T Consensus 75 ~~~~~~~~---~~~~~~~~d~d~~-~~~~~~~~~~~~ 107 (291)
T COG0463 75 RNAGLEYA---RGDYIVFLDADDQ-HPPELIPLVAAG 107 (291)
T ss_pred HHhhHHhc---cCCEEEEEccCCC-CCHHHHHHHHHh
Confidence 99999999 9999999999999 888888855443
No 74
>KOG3738 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=4.6e-13 Score=128.56 Aligned_cols=205 Identities=17% Similarity=0.139 Sum_probs=150.9
Q ss_pred CCCCcEEEEEeccCCh-HHHHHHHHHHHcCCCCCCee-EEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCC
Q 041333 94 SSYPMVLVQIPMFNER-EVYQLSIGAACGLSWPSDRL-IIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGY 171 (513)
Q Consensus 94 ~~~P~VsIiIP~yne~-~~l~~~l~sl~~q~yp~~~i-~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~ 171 (513)
.++|..||||.-+||+ ..+-+|+.|++++.-++.-. +|.|+|.|.|++.-.... + -.++++++++++.|
T Consensus 121 ~dlp~TsviITfHNEARS~LLRTv~SvlnrsP~~li~EiILVDD~S~Dped~~~L~----r----i~kvr~LRN~~ReG- 191 (559)
T KOG3738|consen 121 VDLPPTSVIITFHNEARSTLLRTVVSVLNRSPEHLIHEIILVDDFSQDPEDGKLLK----R----IPKVRVLRNNEREG- 191 (559)
T ss_pred cCCCCceEEEEeccHHHHHHHHHHHHHHcCChHHhhheeEEecCCCCChHHHHHHh----h----hheeeeecccchhh-
Confidence 4678899999999999 78999999999987554422 344666688877654443 2 25788888888888
Q ss_pred ChhHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCch-HHHHH----Hhhhcch
Q 041333 172 KAGALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECL-MTRLQ----EMSLDYH 246 (513)
Q Consensus 172 Ka~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~-~~~~~----~~~~~~~ 246 (513)
-...++.|.+.| ++.++.|+|+.|.+..+||+-++....+|+ ..+|+.-....|.|.-- ..... .+.+..+
T Consensus 192 LirSRvrGAdvA---~a~vltFLDSHcEvN~~WLePLL~Rvaed~-trvVsPiiDvIn~dnf~Y~~asadLrGGFDWsLh 267 (559)
T KOG3738|consen 192 LIRSRVRGADVA---QATVLTFLDSHCEVNEGWLEPLLERVAEDT-TRVVSPIIDVINLDNFSYVGASADLRGGFDWSLH 267 (559)
T ss_pred hhhhhccccccc---cceEEEEEecceeecchhhHHHHHHHhhcc-cceeecccccccccccccccchhhhcCCcceEEE
Confidence 788999999999 999999999999999999999999985554 35666666666664311 11111 1223333
Q ss_pred hhHHhh-----hcc----cCCCccccccceeeeeHHHHHHcCCCCCCC---ccchHHHHHHHhhCCCeEEEeccccc
Q 041333 247 FTVEQE-----VGS----STHAFFGFNGTAGVWRIAAVNEAGGWKDRT---TVEDMDLAVRASLKGWKFLYLGTVKV 311 (513)
Q Consensus 247 ~~~~~~-----~~~----~~~~~~~~~G~~~~~rr~~l~~~gg~~~~~---~~ED~~l~~rl~~~G~~i~~~~~~~~ 311 (513)
|..++. ... .....+.+.|.-.++.|+.|+++|-||.+. .+|..++++|+..-|..+..+|-..+
T Consensus 268 F~We~~~~eqr~sr~~Pt~PirtP~iAGGlfvidk~wF~~LGkyd~~mdiWGGEn~ElsfrvW~CGGslEIvPCSRV 344 (559)
T KOG3738|consen 268 FKWEQMQLEQRESRADPTAPIRTPAIAGGLFVIDKEWFNELGKYDMDMDIWGGENLELSFRVWQCGGSLEIVPCSRV 344 (559)
T ss_pred EEehhcCHHHHhhccCCCCcccCccccceeEEecHHHHHHhcccCccccccCCcceEEEEEEEeeCCeeEEEeccch
Confidence 332221 111 112223467999999999999999999876 88999999999999999988887665
No 75
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.3e-12 Score=125.16 Aligned_cols=212 Identities=17% Similarity=0.162 Sum_probs=147.4
Q ss_pred CCCCCcEEEEEeccCCh-HHHHHHHHHHHcCCCCCCee-EEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCC
Q 041333 93 NSSYPMVLVQIPMFNER-EVYQLSIGAACGLSWPSDRL-IIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKG 170 (513)
Q Consensus 93 ~~~~P~VsIiIP~yne~-~~l~~~l~sl~~q~yp~~~i-~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g 170 (513)
++++|.+||+|.-+||. ..+.+|+.|++.-.-+..-- +|.|+|+|+.+-.++-++++...| +-.+++++++++.|
T Consensus 151 pe~Lpt~SVviVFHNEGws~LmRTVHSVi~RsP~~~l~eivlvDDfSdKehLkekLDeYv~~f---nGlVkV~Rne~REG 227 (603)
T KOG3737|consen 151 PENLPTSSVVIVFHNEGWSTLMRTVHSVIKRSPRKYLAEIVLVDDFSDKEHLKEKLDEYVKLF---NGLVKVFRNERREG 227 (603)
T ss_pred cccCCcceEEEEEecCccHHHHHHHHHHHhcCcHHhhheEEEeccCCccHHHHHHHHHHHHHh---cCEEEEEecchhhh
Confidence 57899999999999999 89999999999766444422 343566687777766666666655 34577777777777
Q ss_pred CChhHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEE------Eee-EEEe---cCCCchHHHHHH
Q 041333 171 YKAGALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALV------QAR-WEFV---NADECLMTRLQE 240 (513)
Q Consensus 171 ~Ka~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V------~~~-~~~~---n~~~~~~~~~~~ 240 (513)
-..|+..|.+.| .||.++++||.|.+.-+|+.-+++.+..|..+.-| -+. +.+. +.+..-...+.+
T Consensus 228 -LI~aRSiGA~~a---tGeV~ifLDAHCEVntNWlpPLlAPI~rdRtvmTVP~IDgId~n~~EyrpvyG~dn~h~rGife 303 (603)
T KOG3737|consen 228 -LIQARSIGAQKA---TGEVLIFLDAHCEVNTNWLPPLLAPISRDRTVMTVPLIDGIDGNTYEYRPVYGGDNDHARGIFE 303 (603)
T ss_pred -hhhhhccchhhc---cccEEEEEecceeeecccccccccccccCceEEEEeeeeeecCCceEEeeccCCcchhhcchhh
Confidence 788999999999 99999999999999999999999998666544322 111 1111 111111111111
Q ss_pred hhhcch----hhHHhhh---cccCCCccccccceeeeeHHHHHHcCCCCCCC---ccchHHHHHHHhhCCCeEEEecccc
Q 041333 241 MSLDYH----FTVEQEV---GSSTHAFFGFNGTAGVWRIAAVNEAGGWKDRT---TVEDMDLAVRASLKGWKFLYLGTVK 310 (513)
Q Consensus 241 ~~~~~~----~~~~~~~---~~~~~~~~~~~G~~~~~rr~~l~~~gg~~~~~---~~ED~~l~~rl~~~G~~i~~~~~~~ 310 (513)
..+.+. -..++.. .+.....+.-.|.-+++.|+.+.++|.+|+.. .+|.+++++++.+-|.++.++|-..
T Consensus 304 WgmLyKe~~~t~rE~r~RkhnsePyRSPthAGGLfAInRe~F~ELG~YDpgLqiWGGEnfElSfKIWQCGG~i~fVPCSr 383 (603)
T KOG3737|consen 304 WGMLYKEVPLTPREKRLRKHNSEPYRSPTHAGGLFAINREFFFELGLYDPGLQIWGGENFELSFKIWQCGGKILFVPCSR 383 (603)
T ss_pred hhheeccCCCCHHHHHhhhccCCCCCCcccccceeeehHHHHHHhccCCCcceeecCcceeEEEEEEeeCCEEEEEEccc
Confidence 111110 0111111 11122222345888999999999999999876 7899999999999999999999766
Q ss_pred c
Q 041333 311 V 311 (513)
Q Consensus 311 ~ 311 (513)
+
T Consensus 384 V 384 (603)
T KOG3737|consen 384 V 384 (603)
T ss_pred c
Confidence 5
No 76
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=1.3e-12 Score=135.08 Aligned_cols=212 Identities=14% Similarity=0.160 Sum_probs=148.7
Q ss_pred CCCCCcEEEEEeccCCh-HHHHHHHHHHHcCCCCCCeeEEEEEeCCC-chhHHHHHHHHHHHhhccCccEEEEEcCCCCC
Q 041333 93 NSSYPMVLVQIPMFNER-EVYQLSIGAACGLSWPSDRLIIQVLDDST-DLTIKDMVELECQRWASKGINIKYEVRDNRKG 170 (513)
Q Consensus 93 ~~~~P~VsIiIP~yne~-~~l~~~l~sl~~q~yp~~~i~IiV~Dds~-D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g 170 (513)
.+.+|..||||+-+||. .++-+++.|+.+..-+.--.+|+++||++ .+......+...+++ ..+++++.+++.|
T Consensus 138 ~~~Lp~~Svii~f~nE~~s~llRtv~Svi~rtp~~lLkEIiLVdD~S~~~~l~~~Ld~y~k~~----~~v~i~r~~~R~G 213 (578)
T KOG3736|consen 138 SDKLPTTSVIIIFHNEAWSTLLRTVHSVINRTPPYLLKEIILVDDFSDRDHLKDKLEEYVKRF----SKVRILRTKKREG 213 (578)
T ss_pred ccccCCCceEEEEecCCCcchhheEEeehccCChhHeEEEEEeecCcchhhhhhhhHHHHhhh----cceeEEeecchhh
Confidence 45689999999999998 78899999999876554434555666644 444344444444333 3488888888888
Q ss_pred CChhHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHH---H--Hhhhcc
Q 041333 171 YKAGALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRL---Q--EMSLDY 245 (513)
Q Consensus 171 ~Ka~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~---~--~~~~~~ 245 (513)
+..|++.|.+.| +||+++|+|+.+....+||+-+++.+..|. ..+|+..+...+.+.-.+... . .+....
T Consensus 214 -LIrARl~GA~~A---~geVL~FLDsHcE~n~gWLePLL~~I~~~r-~tvv~PvID~Id~~tf~y~~~~~~~rGgFdW~l 288 (578)
T KOG3736|consen 214 -LIRARLLGASMA---TGEVLTFLDSHCEVNVGWLEPLLARIAEDR-KTVVCPVIDVIDDNTFEYEKQSELMRGGFDWEL 288 (578)
T ss_pred -hHHHHhhhhhhh---hchheeeeecceeEecCcchHHHHHhhhcC-ceeecceEEeecCcCceecccCccceeeeecce
Confidence 899999999999 999999999999999999999999985443 345555554444322111110 0 111111
Q ss_pred hhh------HHhhh-c--ccCCCccccccceeeeeHHHHHHcCCCCCCC---ccchHHHHHHHhhCCCeEEEeccccccc
Q 041333 246 HFT------VEQEV-G--SSTHAFFGFNGTAGVWRIAAVNEAGGWKDRT---TVEDMDLAVRASLKGWKFLYLGTVKVKN 313 (513)
Q Consensus 246 ~~~------~~~~~-~--~~~~~~~~~~G~~~~~rr~~l~~~gg~~~~~---~~ED~~l~~rl~~~G~~i~~~~~~~~~~ 313 (513)
.|. ..... . ......+...|+..+++|+.|.++|+||+.. .+|..++++|+..-|.++..+|-..+-|
T Consensus 289 ~f~w~~lP~~~~~~~~~~t~PirsPtMaGglFAI~r~yF~eiG~yD~gMdiwGGENlElSfrvWqCGG~lei~PCSrVGH 368 (578)
T KOG3736|consen 289 TFKWERLPLPEEKRRELPTDPIRSPTMAGGLFAIDRKYFGELGSYDEGMDIWGGENLELSFRVWQCGGRLEIVPCSRVGH 368 (578)
T ss_pred eEEeccCCccHhhcccCCCCCcCCcccCCceEEeeHHHHhhccCccccccccChhhceeeEEEeccCCeEEecCccceee
Confidence 111 00111 1 1112223367999999999999999999987 7899999999999999999999777643
No 77
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=99.28 E-value=2.6e-10 Score=105.72 Aligned_cols=208 Identities=19% Similarity=0.160 Sum_probs=124.9
Q ss_pred cEEEEEeccCChH----HHHHHHHHHHcCCCCC---CeeEE-EEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCC
Q 041333 98 MVLVQIPMFNERE----VYQLSIGAACGLSWPS---DRLII-QVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRK 169 (513)
Q Consensus 98 ~VsIiIP~yne~~----~l~~~l~sl~~q~yp~---~~i~I-iV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~ 169 (513)
..|||||+|||+. .+.+|++++. ..|.. ...+| +|+|+|+|.|.+... +.+.++ ...+++++...+|.
T Consensus 68 ~lsVIVpaynE~~ri~~mldeav~~le-~ry~~~~~F~~eiiVvddgs~d~T~~~a~-k~s~K~--~~d~irV~~l~~nr 143 (323)
T KOG2977|consen 68 YLSVIVPAYNEEGRIGAMLDEAVDYLE-KRYLSDKSFTYEIIVVDDGSTDSTVEVAL-KFSRKL--GDDNIRVIKLKKNR 143 (323)
T ss_pred eeEEEEecCCcccchHHHHHHHHHHHH-HHhccCCCCceeEEEeCCCCchhHHHHHH-HHHHHc--CcceEEEeehhccC
Confidence 6899999999995 4455555544 23322 33333 366679999988544 444443 34678888888787
Q ss_pred CCChhHHHHHHHhcccCCCcEEEEEcCC--CCC-ChHHHHHHHHHHhc-CCCeeEEEeeEEEecCCCchHHH-H-HHhhh
Q 041333 170 GYKAGALREGMKRGYVKSCDFVVIFDAD--FQP-ESDFLTRTIPFLVH-NPQLALVQARWEFVNADECLMTR-L-QEMSL 243 (513)
Q Consensus 170 g~Ka~aln~gl~~a~~~~~d~I~~lDaD--~~~-~pd~L~~l~~~~~~-~~~v~~V~~~~~~~n~~~~~~~~-~-~~~~~ 243 (513)
| |++|...|+.++ +|+++++.||| +.+ +-+.|++.+..... .++-++++|...+....+....+ + .++-+
T Consensus 144 g-KGgAvR~g~l~~---rG~~ilfadAdGaTkf~d~ekLe~al~~~~~p~~r~~va~GsrahLe~~~a~a~rs~~r~iLM 219 (323)
T KOG2977|consen 144 G-KGGAVRKGMLSS---RGQKILFADADGATKFADLEKLEKALNDKAGPGPRDDVACGSRAHLENTEAVAKRSVIRNILM 219 (323)
T ss_pred C-CCcceehhhHhc---cCceEEEEcCCCCccCCCHHHHHHHHHhhcCCCCCCceeecCHHHhhccHHHHHHhHhhHHHH
Confidence 7 999999999999 99999999999 555 55677777765531 23444444444333221222222 1 11111
Q ss_pred -cchhhHHhhhcccCCCccccccceeeeeHHHHHHcCCCCCC-CccchHHHHHHHhhCCCeEEEecccccccccCcC
Q 041333 244 -DYHFTVEQEVGSSTHAFFGFNGTAGVWRIAAVNEAGGWKDR-TTVEDMDLAVRASLKGWKFLYLGTVKVKNELPST 318 (513)
Q Consensus 244 -~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~gg~~~~-~~~ED~~l~~rl~~~G~~i~~~~~~~~~~~~p~~ 318 (513)
.+|..+...+.......- +| +-+|.|++.+.+=.+..- ..+-|.++-+.+.+.+-.+.-.+ +-+++.+.+
T Consensus 220 ~gFH~lv~~~a~rsI~DTQ--cg-fklftR~aa~~if~~lh~e~W~fdvEll~La~~~~ipi~ei~--v~w~EIdgS 291 (323)
T KOG2977|consen 220 YGFHKLVWIFAIRSIRDTQ--CG-FKLFTRAAARRIFPWLHVERWAFDVELLYLAKRFTIPIKEIP--VEWTEIDGS 291 (323)
T ss_pred HHHHHHHHHHhcCcccccc--hh-HHHhHHHHHHhhcchhheeeeeccHHHHHHHHHcCCCcEEee--eEEEEcCCc
Confidence 122222222222222221 12 457889888887544432 26678998888888776665554 456666555
No 78
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=99.17 E-value=5e-10 Score=110.17 Aligned_cols=172 Identities=18% Similarity=0.142 Sum_probs=107.8
Q ss_pred EEEEEeccCChHHHHHHHHHHHcCC--CCCCeeEEEEEeC-CCchhHHHHHHHHHHHhhccCccEEEEEcCCCC----C-
Q 041333 99 VLVQIPMFNEREVYQLSIGAACGLS--WPSDRLIIQVLDD-STDLTIKDMVELECQRWASKGINIKYEVRDNRK----G- 170 (513)
Q Consensus 99 VsIiIP~yne~~~l~~~l~sl~~q~--yp~~~i~IiV~Dd-s~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~----g- 170 (513)
+.|+|++||.++.+++||+|+++|. ..+.+ |+|.+| +.+++.+ .++. + +.+++++..++.. |
T Consensus 2 ~PVlv~ayNRp~~l~r~LesLl~~~p~~~~~~--liIs~DG~~~~~~~-~v~~----~---~~~i~~i~~~~~~~~~~~~ 71 (334)
T cd02514 2 IPVLVIACNRPDYLRRMLDSLLSYRPSAEKFP--IIVSQDGGYEEVAD-VAKS----F---GDGVTHIQHPPISIKNVNP 71 (334)
T ss_pred cCEEEEecCCHHHHHHHHHHHHhccccCCCce--EEEEeCCCchHHHH-HHHh----h---ccccEEEEcccccccccCc
Confidence 4599999999999999999999984 33333 444555 4444443 3332 2 1245555433211 1
Q ss_pred --------CChh----HHHHHHHhcccCCCcEEEEEcCCCCCChHH---HHHHHHHHhcCCCeeEEEeeEEEecCCCchH
Q 041333 171 --------YKAG----ALREGMKRGYVKSCDFVVIFDADFQPESDF---LTRTIPFLVHNPQLALVQARWEFVNADECLM 235 (513)
Q Consensus 171 --------~Ka~----aln~gl~~a~~~~~d~I~~lDaD~~~~pd~---L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~ 235 (513)
+-+. |+|.+++.. +++.++++|+|+.+.||+ ++++++.+++|+.+.+|++.-. |......
T Consensus 72 ~~~~~~y~~ia~hyk~aln~vF~~~---~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~Nd--nG~~~~~ 146 (334)
T cd02514 72 PHKFQGYYRIARHYKWALTQTFNLF---GYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAWND--NGKEHFV 146 (334)
T ss_pred ccccchhhHHHHHHHHHHHHHHHhc---CCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEeecc--CCccccc
Confidence 0122 888888887 899999999999999995 5778888889999999988642 1110000
Q ss_pred HHHHHhhhcchhhHHhhhcccCCCccccccceeeeeHHHHHHcCCCCCCCccchHHHHHHH--hhCCCeE
Q 041333 236 TRLQEMSLDYHFTVEQEVGSSTHAFFGFNGTAGVWRIAAVNEAGGWKDRTTVEDMDLAVRA--SLKGWKF 303 (513)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~gg~~~~~~~ED~~l~~rl--~~~G~~i 303 (513)
.. ..........++|.+-+.+|+++++.. +.--.-|+|..+|. +++|..+
T Consensus 147 ~~---------------~~~~lyrs~ff~glGWml~r~~W~e~~---~~wp~~~WD~w~R~~~~rkgr~c 198 (334)
T cd02514 147 DD---------------TPSLLYRTDFFPGLGWMLTRKLWKELE---PKWPKAFWDDWMRLPEQRKGREC 198 (334)
T ss_pred CC---------------CcceEEEecCCCchHHHHHHHHHHHhC---CCCCCCChHHhhcchhhhcCCcc
Confidence 00 000111111255777688888888762 22222499999985 5667554
No 79
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=99.01 E-value=3.5e-09 Score=99.12 Aligned_cols=181 Identities=14% Similarity=0.217 Sum_probs=97.0
Q ss_pred EEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHH
Q 041333 99 VLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALRE 178 (513)
Q Consensus 99 VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~ 178 (513)
||||+ |+|.++..++|++++.++..|+.+.+- | |+ .++..+ -+.+.|.
T Consensus 1 isiI~-c~n~~~~~~~~~~~i~~~~~~~~~~i~-i-~~----------------------------~~~~~s-~~~~yN~ 48 (217)
T PF13712_consen 1 ISIII-CVNDEELYEECLRSIKRLIGPPGELIE-I-DN----------------------------VRNAKS-MAAAYNE 48 (217)
T ss_dssp EEEEE-EES-HHHHHHHHHHHHHTT--TEEEEE-E-E-----------------------------SSS-S--TTTHHHH
T ss_pred CEEEE-EECCHHHHHHHHHHHHhhCCCCceEEE-E-ec----------------------------cCCCcC-HHHHHHH
Confidence 34544 557777788899999999888754322 2 22 111223 5789999
Q ss_pred HHHhcccCCCcEEEEEcCCCCC-ChHHHHHHHHHHhcCCCeeEEEe--eEEEecCCCchHHHHHH----hhhcc-hh--h
Q 041333 179 GMKRGYVKSCDFVVIFDADFQP-ESDFLTRTIPFLVHNPQLALVQA--RWEFVNADECLMTRLQE----MSLDY-HF--T 248 (513)
Q Consensus 179 gl~~a~~~~~d~I~~lDaD~~~-~pd~L~~l~~~~~~~~~v~~V~~--~~~~~n~~~~~~~~~~~----~~~~~-~~--~ 248 (513)
|++.| +++|+++++.|..+ +++|+.+++..|+++|++|+++- ... ..++..++..... ..+.. .. .
T Consensus 49 a~~~a---~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~~G~iGvaG~~~-~~~~~~~w~~~~~~g~~~~~~~~~~~~~ 124 (217)
T PF13712_consen 49 AMEKA---KAKYLVFLHQDVFIINENWLEDILEIFEEDPNIGMIGVAGSKR-LPPNGVWWESPNKVGKVREYGRIMHGHG 124 (217)
T ss_dssp HGGG-----SSEEEEEETTEE-SSHHHHHHHHHHHHH-TTEEEEESEEEES-S-S-TTS---EEEEEETTEEEE----E-
T ss_pred HHHhC---CCCEEEEEeCCeEEcchhHHHHHHHHHhhCCCccEEEeecCCc-CCCCCccccccccccccccccccccccc
Confidence 99999 99999999999766 79999999999988999877652 221 1222222221100 00000 00 0
Q ss_pred HH--------hhhcccCCCccccccceeeeeHHHHHHcCCCCCCC----ccchHHHHHHHhhCCCeEEEecccccccccC
Q 041333 249 VE--------QEVGSSTHAFFGFNGTAGVWRIAAVNEAGGWKDRT----TVEDMDLAVRASLKGWKFLYLGTVKVKNELP 316 (513)
Q Consensus 249 ~~--------~~~~~~~~~~~~~~G~~~~~rr~~l~~~gg~~~~~----~~ED~~l~~rl~~~G~~i~~~~~~~~~~~~p 316 (513)
.. .+.......+-.+.|..++.+|+.+ +|+++. -.-|.|+|+++.++|+++ +++++.+.|...
T Consensus 125 ~~~~~~~~~~~~~~~~~~~V~avDg~ll~~~~dv~----~fde~~~~gfH~Ydvd~cl~~~~~G~~v-~~~~~~~~H~s~ 199 (217)
T PF13712_consen 125 PNSAGEVRYGGPRNDPPEEVQAVDGLLLATQKDVP----RFDEDLFTGFHFYDVDQCLEARRAGYRV-VVPPPWCIHFSG 199 (217)
T ss_dssp ------------ES-SSEEEEEE-TTEEEEETTB---------SS--SSSSHHHHHHHHHHHTT-EE-EE-----EE-S-
T ss_pred ccccccccccccccCCceeEEEecceEEEEEcccC----CCCccccCCcchHHHHHHHHHHHhCCEE-EecCceEEEcCC
Confidence 00 0000112223335699999999998 788873 357999999999999999 667777888776
Q ss_pred cCHH
Q 041333 317 STFK 320 (513)
Q Consensus 317 ~~~~ 320 (513)
.++.
T Consensus 200 g~~~ 203 (217)
T PF13712_consen 200 GSFD 203 (217)
T ss_dssp ---S
T ss_pred CCcc
Confidence 6644
No 80
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=98.65 E-value=2.8e-07 Score=84.84 Aligned_cols=178 Identities=17% Similarity=0.136 Sum_probs=111.4
Q ss_pred cEEEEEeccCChHHHHHHHHHHH----cCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCCh
Q 041333 98 MVLVQIPMFNEREVYQLSIGAAC----GLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKA 173 (513)
Q Consensus 98 ~VsIiIP~yne~~~l~~~l~sl~----~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka 173 (513)
+|+||||-+|.++.+...+..+. +|. -+..|+|.....+ ..-.|+
T Consensus 3 ~~aiivpyr~R~~~l~~~l~~~~~~L~rq~---~~~~i~vi~Q~~~----------------------------~~FNR~ 51 (219)
T cd00899 3 KVAIIVPFRNRFEHLLIFLPHLHPFLQRQQ---LDYRIFVIEQVGN----------------------------FRFNRA 51 (219)
T ss_pred ceEEEEecCCHHHHHHHHHHHHHHHHHhcC---CcEEEEEEEecCC----------------------------ccchhh
Confidence 68999999999988877776553 232 1222333332211 111266
Q ss_pred hHHHHHHHhccc-CCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHhh
Q 041333 174 GALREGMKRGYV-KSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQE 252 (513)
Q Consensus 174 ~aln~gl~~a~~-~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~ 252 (513)
..+|.|...|.. .+.|++++-|.|-.|..+..... +.+.|.-..+.-. . ......+
T Consensus 52 ~llNvG~~~a~k~~~~dc~i~hDVDllP~~~~~~y~---~~~~p~H~s~~~~--~-------------~~~~lpy----- 108 (219)
T cd00899 52 KLLNVGFLEALKDGDWDCFIFHDVDLLPENDRNLYG---CEEGPRHLSVPLD--K-------------FHYKLPY----- 108 (219)
T ss_pred hhhhHHHHHHhhcCCccEEEEecccccccCcccccc---CCCCCeEEEEeec--c-------------cccccCc-----
Confidence 788998877743 24799999999999988875531 2233321111110 0 0000100
Q ss_pred hcccCCCccccccceeeeeHHHHHHcCCCCCCC---ccchHHHHHHHhhCCCeEEEeccccc-----ccc-------cCc
Q 041333 253 VGSSTHAFFGFNGTAGVWRIAAVNEAGGWKDRT---TVEDMDLAVRASLKGWKFLYLGTVKV-----KNE-------LPS 317 (513)
Q Consensus 253 ~~~~~~~~~~~~G~~~~~rr~~l~~~gg~~~~~---~~ED~~l~~rl~~~G~~i~~~~~~~~-----~~~-------~p~ 317 (513)
..+.|++++++|+.+.+++||++.. .+||-|+..|+..+|.++...+.... +|. -+.
T Consensus 109 --------~~~~Gg~~~~~k~~f~~VNGf~n~f~GWGgEDdd~~~Rl~~~g~~~~r~~~~~~~~~hL~H~~~~r~~~N~~ 180 (219)
T cd00899 109 --------KTYFGGVLALTREQFRKVNGFSNAYWGWGGEDDDLYNRIKAAGLKITRPSGDTGRYKMIRHIHDKRNRDNPN 180 (219)
T ss_pred --------ccccccceeeEHHHHHHhCCcCCcCccCCcchHHHHHHHHHCCCeEEeccCcccceeeeecCCCcccccCHH
Confidence 0134889999999999999999976 67999999999999999888776544 221 122
Q ss_pred CHHHHHHHHHhhhhchhHHH
Q 041333 318 TFKAYRYQQHRWSCGPANLF 337 (513)
Q Consensus 318 ~~~~~~~Qr~RW~~G~~~~~ 337 (513)
.+.....++.||....+..+
T Consensus 181 r~~~l~~~~~~~~~dGLnsl 200 (219)
T cd00899 181 RFALLQNSRERDHSDGLNSL 200 (219)
T ss_pred HHHHHHhhCeEeccCCccce
Confidence 24444556667776665443
No 81
>KOG3588 consensus Chondroitin synthase 1 [Carbohydrate transport and metabolism]
Probab=98.14 E-value=7.8e-05 Score=72.03 Aligned_cols=205 Identities=17% Similarity=0.143 Sum_probs=121.5
Q ss_pred CCCCCcEEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCC
Q 041333 93 NSSYPMVLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYK 172 (513)
Q Consensus 93 ~~~~P~VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~K 172 (513)
+-+.|.|.+++|..++.....+...+++...-.+-++.|+...-|.|+... ++..+.++.+-.++..+.....- ..
T Consensus 225 ~i~~pgih~i~pl~gr~~~f~rf~q~~c~~~d~~l~l~vv~f~~se~e~ak---~e~~tslra~f~~~q~l~lngeF-SR 300 (494)
T KOG3588|consen 225 LIEDPGIHMIMPLRGRAAIFARFAQSICARGDDRLALSVVYFGYSEDEMAK---RETITSLRASFIPVQFLGLNGEF-SR 300 (494)
T ss_pred cccCCCceEEEeccchHHHhhhhhHHHhccCCCceEEEEEEecCCChHHHh---hhHHHHHhhcCCceEEecccchh-hh
Confidence 346788999999999999999999998875433334444223334444333 23344555555667666443322 25
Q ss_pred hhHHHHHHHhcccCCCcE-EEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCC-CchHHHHHHhhhcc-hhhH
Q 041333 173 AGALREGMKRGYVKSCDF-VVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNAD-ECLMTRLQEMSLDY-HFTV 249 (513)
Q Consensus 173 a~aln~gl~~a~~~~~d~-I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~-~~~~~~~~~~~~~~-~~~~ 249 (513)
+.|+..|.+.- +.+. +.++|-|.....++|+++-..- -|+-. |--|+.+...+ ..+.+ ++..... .+.+
T Consensus 301 a~aL~vGAe~~---~~nvLLFfcDVDi~FT~efL~rcr~Nt--~~gkq-iyfPivFS~ynp~ivy~--~~~~~p~e~~~~ 372 (494)
T KOG3588|consen 301 AKALMVGAETL---NANVLLFFCDVDIYFTTEFLNRCRLNT--ILGKQ-IYFPIVFSQYNPEIVYE--QDKPLPAEQQLV 372 (494)
T ss_pred hHHHHhhHHHh---ccceeEEEeccceeehHHHHHHHhhcc--CCCce-EEEEEEEeecCcceeec--CCCCCchhHhee
Confidence 67899999887 5554 5668999999999999975432 23222 12222221111 11111 1100000 0000
Q ss_pred HhhhcccCCCccccccceeeeeHHHHHHcCCCCCCC---ccchHHHHHHHhhCCCeEEEecccccc
Q 041333 250 EQEVGSSTHAFFGFNGTAGVWRIAAVNEAGGWKDRT---TVEDMDLAVRASLKGWKFLYLGTVKVK 312 (513)
Q Consensus 250 ~~~~~~~~~~~~~~~G~~~~~rr~~l~~~gg~~~~~---~~ED~~l~~rl~~~G~~i~~~~~~~~~ 312 (513)
.. .......-+++ |-.+.+|-+ +..+||||.+. ..||.+|-.+..+.|.+++-.|++-..
T Consensus 373 ~~-~~tGfwRdfGf-Gmtc~yrsd-~~~vgGFD~~I~GWG~EDV~Ly~K~v~~~l~viR~p~pGl~ 435 (494)
T KOG3588|consen 373 IK-KDTGFWRDFGF-GMTCQYRSD-FLTVGGFDMEIKGWGGEDVDLYRKYVHSGLKVIRTPEPGLF 435 (494)
T ss_pred ec-cccccccccCC-ceeEEeecc-ceeecCcceeeeccCcchHHHHHHHHhcCcEEEecCCCceE
Confidence 00 00111111222 666777766 45789999765 789999999999999999999987653
No 82
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=98.09 E-value=0.00029 Score=65.33 Aligned_cols=196 Identities=14% Similarity=0.120 Sum_probs=110.0
Q ss_pred CcEEEEEeccCCh---HHHHHHHH--HHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCC
Q 041333 97 PMVLVQIPMFNER---EVYQLSIG--AACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGY 171 (513)
Q Consensus 97 P~VsIiIP~yne~---~~l~~~l~--sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~ 171 (513)
|+.+++||+--.+ ..-.+.+. ++.+---+++...|+++|+++- .. .....+.++.+++.|+.-..++.+
T Consensus 2 ~~~~~iiPv~~S~e~p~~~~R~f~~~~~~k~fts~~~~~vi~~~~~~~--~d----~~i~~~i~~~~~~~yl~~~s~~~F 75 (346)
T COG4092 2 QPNGEIIPVAESEELPLTDSRQFSRTSAVKVFTSSDITMVICLRAHEV--MD----RLIRSYIDPMPRVLYLDFGSPEPF 75 (346)
T ss_pred CCcceEeecchhhccchhHHHHHhhHhhhhhccccccEEEEEEecchh--HH----HHHHHHhccccceEEEecCCCccc
Confidence 4577888874332 22233333 2333333556667778888652 11 222345566788888875544332
Q ss_pred --ChhHHHHHHHhccc-CCCcEEEEEcCCCCCChHHHHHHHHHH---hcCCCe-eEEEeeEEEecCCCchHH-HHHHhhh
Q 041333 172 --KAGALREGMKRGYV-KSCDFVVIFDADFQPESDFLTRTIPFL---VHNPQL-ALVQARWEFVNADECLMT-RLQEMSL 243 (513)
Q Consensus 172 --Ka~aln~gl~~a~~-~~~d~I~~lDaD~~~~pd~L~~l~~~~---~~~~~v-~~V~~~~~~~n~~~~~~~-~~~~~~~ 243 (513)
-+...|.|...+.. -+.++|+++|.||....|-..+++... ....++ +...-|+.+.|...+..- .......
T Consensus 76 ~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~dnF~k~l~~~~ikk~~tnI~a~~vlPV~~LNk~~~~v~f~~~d~f~ 155 (346)
T COG4092 76 ASETICANNGADYSHEKCESNLVLFLDVDCFGSSDNFAKMLSIATIKKMRTNIDAPLVLPVYHLNKADTQVFFDVEDMFL 155 (346)
T ss_pred cchhhhhhccchhhhccccccEEEEEeccccccHHHHHHHHHHHHHHHHHhccCcceeeeeeecchhhhhHHHHHHHHhh
Confidence 13456777766621 148999999999999977666665322 112344 345566677776443211 1112222
Q ss_pred cchh--hHHhhhcccCCCccccccceeeeeHHHHHHcCCCCCCC---ccchHHHHHHHhh
Q 041333 244 DYHF--TVEQEVGSSTHAFFGFNGTAGVWRIAAVNEAGGWKDRT---TVEDMDLAVRASL 298 (513)
Q Consensus 244 ~~~~--~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~gg~~~~~---~~ED~~l~~rl~~ 298 (513)
+... ......+....-+.....+..++.|+.+-..||++++. .+||.|+..|+..
T Consensus 156 d~~i~es~~~~~~~~~~ff~~~~T~~~liN~~~F~~tgGydE~F~GhG~EDfe~~~R~~l 215 (346)
T COG4092 156 DAMIFESPLAEFRKEDNFFIAPYTNIFLINRRMFSLTGGYDERFRGHGSEDFEFLTRLGL 215 (346)
T ss_pred hhHhhhhHHHHhCcccccccccccceEEEehhHHHHhcCCccccccCCchhHHHHHHHHH
Confidence 2110 00001111122222234556789999999999999964 7899999998854
No 83
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=97.88 E-value=0.00011 Score=69.87 Aligned_cols=117 Identities=19% Similarity=0.190 Sum_probs=82.9
Q ss_pred CCCCCcEEEEEeccCChHHHHHHHHHHHcCCCCCCeeEE-EEEeCCC--chhHHHHHHHHHHHhhc------cCccEEEE
Q 041333 93 NSSYPMVLVQIPMFNEREVYQLSIGAACGLSWPSDRLII-QVLDDST--DLTIKDMVELECQRWAS------KGINIKYE 163 (513)
Q Consensus 93 ~~~~P~VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~I-iV~Dds~--D~t~~~l~~~~~~~~~~------~~~~v~~~ 163 (513)
..+.|+|-|+.|..|.+..+.+-++.+.+++||++.+.+ +++.+++ |.+.+.+. ...++... +-..+..+
T Consensus 21 ~~~~e~VLILtplrna~~~l~~y~~~L~~L~YP~~lIsLgfLv~d~~e~d~t~~~l~-~~~~~~q~~~~~~~~F~~itIl 99 (269)
T PF03452_consen 21 ARNKESVLILTPLRNAASFLPDYFDNLLSLTYPHELISLGFLVSDSSEFDNTLKILE-AALKKLQSHGPESKRFRSITIL 99 (269)
T ss_pred cccCCeEEEEEecCCchHHHHHHHHHHHhCCCCchheEEEEEcCCCchhHHHHHHHH-HHHHHHhccCcccCCcceEEEE
Confidence 356789999999999999999999999999999998876 5667777 77766443 33333221 11234444
Q ss_pred EcCC----------CCC---------CChhHHHHHHHhcccCCCcEEEEEcCCCCC-ChHHHHHHHH
Q 041333 164 VRDN----------RKG---------YKAGALREGMKRGYVKSCDFVVIFDADFQP-ESDFLTRTIP 210 (513)
Q Consensus 164 ~~~~----------~~g---------~Ka~aln~gl~~a~~~~~d~I~~lDaD~~~-~pd~L~~l~~ 210 (513)
+.+- +.. .-|.|+|..+-.+..+..+||+.+|+|.+- ||+.++.++.
T Consensus 100 ~~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~ 166 (269)
T PF03452_consen 100 RKDFGQQLSQDRSERHAFEVQRPRRRAMARARNFLLSSALGPWHSWVLWLDADIVETPPTLIQDLIA 166 (269)
T ss_pred cCCCcccccCchhhccchhhHHHHHHHHHHHHHHHHHhhcCCcccEEEEEecCcccCChHHHHHHHh
Confidence 3321 111 235567888888877789999999999655 7888888765
No 84
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=97.87 E-value=0.00015 Score=73.58 Aligned_cols=187 Identities=17% Similarity=0.216 Sum_probs=92.5
Q ss_pred CCCCcEEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCC-----
Q 041333 94 SSYPMVLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNR----- 168 (513)
Q Consensus 94 ~~~P~VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~----- 168 (513)
...|.+-|+|-+||.++.+.+||+++++..-..++.-|+|..|++++.....++ ++ +..+.+++.++.
T Consensus 90 ~~~~~~pVlV~AcNRp~yl~r~L~sLl~~rp~~~~fpIiVSQDg~~~~~~~vi~----~y---~~~v~~i~~~~~~~i~~ 162 (434)
T PF03071_consen 90 NKEPVIPVLVFACNRPDYLRRTLDSLLKYRPSAEKFPIIVSQDGDDEEVAEVIK----SY---GDQVTYIQHPDFSPITI 162 (434)
T ss_dssp -------EEEEESS-TT-HHHHHHHHHHH-S-TTTS-EEEEE-TT-HHHHHHHH----GG---GGGSEEEE-S--S----
T ss_pred cCCCcceEEEEecCCcHHHHHHHHHHHHcCCCCCCccEEEEecCCcHHHHHHHH----Hh---hhhheeeecCCcCCcee
Confidence 345678899999999999999999999855223445566888877766555544 33 233455543211
Q ss_pred -CCC-C-------hhHHHHHHHhccc-CCCcEEEEEcCCCCCChHHHHHH---HHHHhcCCCeeEEEeeEEEecCCCchH
Q 041333 169 -KGY-K-------AGALREGMKRGYV-KSCDFVVIFDADFQPESDFLTRT---IPFLVHNPQLALVQARWEFVNADECLM 235 (513)
Q Consensus 169 -~g~-K-------a~aln~gl~~a~~-~~~d~I~~lDaD~~~~pd~L~~l---~~~~~~~~~v~~V~~~~~~~n~~~~~~ 235 (513)
++. | +.-...|+.+... .+++.++++.+|..+.||+++-+ .+.+++||.+-+|++--. |......
T Consensus 163 ~~~~~~~~~y~~IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D~sl~ciSawNd--nG~~~~~ 240 (434)
T PF03071_consen 163 PPKEKKFKGYYKIARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLPLLENDPSLWCISAWND--NGKEHFV 240 (434)
T ss_dssp -TT-GGGHHHHHHHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH-TTEEEEES--T--T-BGGGS
T ss_pred CcccccccchHHHHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHHHHhcCCCeEEEEcccc--CCccccc
Confidence 110 1 1111223333221 26899999999999999988764 456678999988876421 1111000
Q ss_pred HHHHHhhhcchhhHHhhhcccCCCccccccceeeeeHHHHHHcC-CCCCCCccchHHHHHH--HhhCCCeEEEecc
Q 041333 236 TRLQEMSLDYHFTVEQEVGSSTHAFFGFNGTAGVWRIAAVNEAG-GWKDRTTVEDMDLAVR--ASLKGWKFLYLGT 308 (513)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~g-g~~~~~~~ED~~l~~r--l~~~G~~i~~~~~ 308 (513)
. ..........-.++|-+-+.+|+.++++. .|+.. -+|-.+| .+++|..++. |+
T Consensus 241 ~--------------~~~~~~lyRsdffpglGWml~r~~w~el~~~Wp~~----~WDdwmR~~~~rkgR~cIr-Pe 297 (434)
T PF03071_consen 241 D--------------DSRPSLLYRSDFFPGLGWMLTRELWDELEPKWPKA----FWDDWMRQPEQRKGRQCIR-PE 297 (434)
T ss_dssp ---------------TT-TT-EEEESS---SSEEEEHHHHHHHGGG--SS-----HHHHHTSHHHHTT-EEEE-ES
T ss_pred c--------------CCCccceEecccCCchHHHhhHHHHHhhcccCCCC----CchhhhcCccccCCCceee-cc
Confidence 0 00001111112256888999999999865 35432 3555554 5678877765 54
No 85
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=97.54 E-value=0.0028 Score=67.01 Aligned_cols=202 Identities=20% Similarity=0.184 Sum_probs=113.3
Q ss_pred CCcEEEEEeccCC-hHHHHHHHHHHHc---CCCCCCeeEEEEEeCC-Cchh----HHHHHHHHHHHhhccCccEEEEEcC
Q 041333 96 YPMVLVQIPMFNE-REVYQLSIGAACG---LSWPSDRLIIQVLDDS-TDLT----IKDMVELECQRWASKGINIKYEVRD 166 (513)
Q Consensus 96 ~P~VsIiIP~yne-~~~l~~~l~sl~~---q~yp~~~i~IiV~Dds-~D~t----~~~l~~~~~~~~~~~~~~v~~~~~~ 166 (513)
...|.||||..+. .+.+.+-++...+ +.-.+..+.| |...+ .|.. .+..+++..+++ ...++.++...
T Consensus 246 ~~~V~iIvPl~~r~~~~~~~Fl~~~~~~~l~~~~~~~L~v-V~~~~~~~~~~~~~ik~~l~~l~~k~--~~~~i~~i~~~ 322 (499)
T PF05679_consen 246 STRVHIIVPLSGREADWFRRFLENFEKVCLETDDNVFLTV-VLFYDPSDSDSISQIKELLEELERKY--PFSRIKWISVK 322 (499)
T ss_pred CCEEEEEEEecCccHHHHHHHHHHHHHHhcccCCceEEEE-EEecCcccchhHHHHHHHHHHHHHhC--CccceEEEEec
Confidence 4689999999999 6666666655443 2211123333 44432 3321 222444444444 34667777766
Q ss_pred CCCCCChhHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEE--ecCCCchHHHHHHhhhc
Q 041333 167 NRKGYKAGALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEF--VNADECLMTRLQEMSLD 244 (513)
Q Consensus 167 ~~~g~Ka~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~--~n~~~~~~~~~~~~~~~ 244 (513)
...-.++.+++.|++.. +..++++++|.|..+++++|.++-..- -++. -|-.|..+ +|++.. ... .....
T Consensus 323 ~~~fsr~~~Ld~g~~~~--~~d~L~f~~Dvd~~f~~~fL~rcR~nt--i~g~-qvy~PI~Fs~y~p~~~-~~~--~~~~~ 394 (499)
T PF05679_consen 323 TGEFSRGAALDVGAKKF--PPDSLLFFCDVDMVFTSDFLNRCRMNT--IPGK-QVYFPIVFSQYNPDIV-YAG--KPPEP 394 (499)
T ss_pred CCCccHHHHHHhhcccC--CCCcEEEEEeCCcccCHHHHHHHHHhh--hcCc-EEEEeeeccccCCccc-ccC--CCCcc
Confidence 23334788999999865 377899999999999999999975443 1221 12333333 222110 000 00000
Q ss_pred chhhHHhhhcccCCCccccccceeeeeHHHHHHc-CCCCCCC---ccchHHHHHHHhhCC--CeEEEeccccc
Q 041333 245 YHFTVEQEVGSSTHAFFGFNGTAGVWRIAAVNEA-GGWKDRT---TVEDMDLAVRASLKG--WKFLYLGTVKV 311 (513)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~-gg~~~~~---~~ED~~l~~rl~~~G--~~i~~~~~~~~ 311 (513)
..+......| .....++ |-.++|+.+....- ||++... ..||.|+.-+..+.| .++.-.+++-.
T Consensus 395 ~~~~i~~~~G--~w~~~gf-g~~~~YksDy~~~~~~~~~~~~~gwg~ED~~l~~~~l~~~~~l~V~Ra~ep~L 464 (499)
T PF05679_consen 395 DQFDISKDTG--FWRRFGF-GMVCFYKSDYMRIRGGGFDLSIRGWGGEDVDLYDKFLKSGHKLHVFRAVEPGL 464 (499)
T ss_pred ccCccCCCCC--ccccCCC-ceEEEEhhhhhhhcccccccccccccccHHHHHHHHHhCCCceEEEEccCCCe
Confidence 0001111111 1111111 66677777755431 6666643 789999999999999 88888877654
No 86
>PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A.
Probab=97.51 E-value=0.00071 Score=65.82 Aligned_cols=123 Identities=18% Similarity=0.214 Sum_probs=65.2
Q ss_pred CcEEEEEeccCCh-HHHHHHHHHHHcCCCCCCeeEEEEEeCCCc---hhHHH---HHHHHHHHhhccCccEEEEEcC---
Q 041333 97 PMVLVQIPMFNER-EVYQLSIGAACGLSWPSDRLIIQVLDDSTD---LTIKD---MVELECQRWASKGINIKYEVRD--- 166 (513)
Q Consensus 97 P~VsIiIP~yne~-~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D---~t~~~---l~~~~~~~~~~~~~~v~~~~~~--- 166 (513)
-+.+|+||+.||+ ..++..|.++ |.+..+| |+.||+. +..+. +++.+|.. .+.++..+|..
T Consensus 50 ~~maIVVP~KnE~l~lleGVL~gI-----Ph~C~II-vVSNS~r~~~d~f~~E~d~l~~f~~~---t~r~~~~vHQkDp~ 120 (381)
T PF09488_consen 50 SKMAIVVPCKNEKLKLLEGVLSGI-----PHDCLII-VVSNSSREPVDRFKMEVDLLKHFCRL---TRRQIIIVHQKDPG 120 (381)
T ss_dssp TTEEEEEEESS--HHHHHHHHHCS------TTSEEE-EEE---CSSSCHHHHHHHHHHHHHHH---CT--EEEEETT-HH
T ss_pred hCcEEEEECCCCchhhhhhhhhcC-----CCCCeEE-EEECCCCCCccHHHHHHHHHHHHHHh---hcCceEEEecCCHH
Confidence 4689999999999 6666665543 5555656 5556554 22221 33333332 23455566542
Q ss_pred -------------------CCCCCChhHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHH---HHH-hcCCCeeEEEe
Q 041333 167 -------------------NRKGYKAGALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTI---PFL-VHNPQLALVQA 223 (513)
Q Consensus 167 -------------------~~~g~Ka~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~---~~~-~~~~~v~~V~~ 223 (513)
-++ ||+.++-.|+-.|.....+||-|+|||...|-..-+.+. +-| .+.....+|--
T Consensus 121 lA~Af~~aGy~~il~~~g~VR~-GKgEGMiiGillAk~~g~~YVGFvDADNyiPGaV~EYvk~yAAGf~ms~spytMVRi 199 (381)
T PF09488_consen 121 LAEAFKEAGYPEILDEDGLVRN-GKGEGMIIGILLAKAPGKRYVGFVDADNYIPGAVNEYVKDYAAGFAMSESPYTMVRI 199 (381)
T ss_dssp HHHHHHHTT--TTB-TTSSB-S-SHHHHHHHHHHHHHHTT-SEEEE--TTBS-HHHHHHHHHHHHHHHHC-SSSCEEEEE
T ss_pred HHHHHHHcCcHHHhCCCCceec-CchHHHHHHHHHHHhcCCceEeEeeccCCCcchHHHHHHHHHhhhcccCCCceEEEE
Confidence 123 599999999988766789999999999988755444433 222 24556677877
Q ss_pred eEEEec
Q 041333 224 RWEFVN 229 (513)
Q Consensus 224 ~~~~~n 229 (513)
.|.+..
T Consensus 200 ~W~~KP 205 (381)
T PF09488_consen 200 HWRSKP 205 (381)
T ss_dssp E-----
T ss_pred EecCCC
Confidence 776543
No 87
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=97.32 E-value=0.0027 Score=61.89 Aligned_cols=190 Identities=12% Similarity=0.089 Sum_probs=98.9
Q ss_pred CCcEEEEEeccCCh-HHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHH------HHHHHHHHhhccCccEEEEEcC--
Q 041333 96 YPMVLVQIPMFNER-EVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKD------MVELECQRWASKGINIKYEVRD-- 166 (513)
Q Consensus 96 ~P~VsIiIP~yne~-~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~------l~~~~~~~~~~~~~~v~~~~~~-- 166 (513)
.-...|+|||.||+ ..++-.|.++ |.+..+| |+.||+.+..+. +++.+|+. ...++..+|..
T Consensus 50 ~~~mAIVVP~KdE~l~lleGVL~gI-----Ph~c~iI-vVSNS~r~~~d~f~~E~dlv~~f~~~---t~r~~i~vHQkDp 120 (393)
T PRK14503 50 LGRMAIVVPVKNERLKLLEGVLKGI-----PHECPII-VVSNSKREPPDRFKLEVDLVRHFYRL---TQRPIIIVHQKDP 120 (393)
T ss_pred HhCcEEEEEcCCCchhHHhhHhhcC-----CCCCeEE-EEeCCCCCCchHHHHHHHHHHHHHhh---hcCceEEEEcCCH
Confidence 34689999999999 5555555443 5555555 666665432221 22222221 12234444431
Q ss_pred --------------------CCCCCChhHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHH---HH-hcCCCeeEEE
Q 041333 167 --------------------NRKGYKAGALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIP---FL-VHNPQLALVQ 222 (513)
Q Consensus 167 --------------------~~~g~Ka~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~---~~-~~~~~v~~V~ 222 (513)
-++ ||+.++-.|+-.|.....+||-|+|||..+|-..-+.+.. -| .+.....+|-
T Consensus 121 ~la~Af~~aGyp~il~~~g~VR~-GKgEGMiiG~lLAk~~g~~YVGFiDADNyiPGaV~EYvk~yAAGf~ma~spytMVR 199 (393)
T PRK14503 121 GLAEALKEAGYPYILDENGLVRS-GKGEGMIIGLLLAKALGARYVGFVDADNYIPGAVNEYVKIYAAGFLMAESPYTMVR 199 (393)
T ss_pred HHHHHHHHcCChhhhCCCCceec-CcchHHHHHHHHHHHhCCCeEeEeecccCCCchHHHHHHHHHhhhcccCCCCceEE
Confidence 123 5999999998887666899999999998887554444332 22 1222334554
Q ss_pred eeEEEecC---------CCchHHHHHHhhhcchhhHHhhhcccCCCccccc--cceeeeeHHHHHHcCCCCCCCccchHH
Q 041333 223 ARWEFVNA---------DECLMTRLQEMSLDYHFTVEQEVGSSTHAFFGFN--GTAGVWRIAAVNEAGGWKDRTTVEDMD 291 (513)
Q Consensus 223 ~~~~~~n~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--G~~~~~rr~~l~~~gg~~~~~~~ED~~ 291 (513)
-.|.+... ...-.+...+..++..+.. .........-+ +.=-+.+++..+.+ .|......|-..
T Consensus 200 i~W~~KPKv~~~~lyF~k~GRvSel~nr~LN~l~~~----~~gf~t~li~TGNAGEhAmt~~La~~l-~f~tGY~VEp~~ 274 (393)
T PRK14503 200 IHWRYKPKVTEDRLYFRKWGRVSEITNRYLNQLISE----YTGFETDIIKTGNAGEHAMTMKLAEIM-PFSTGYSIEPYE 274 (393)
T ss_pred EEecCCCceecCeEEEecCcchhHHHHHHHHHHHhh----hccccccceecCCchhhHhhHHHHHhC-CCCCCccccHHH
Confidence 44443211 0111222211111211111 01111111112 22346788888776 566666667777
Q ss_pred HHHHHhhCC
Q 041333 292 LAVRASLKG 300 (513)
Q Consensus 292 l~~rl~~~G 300 (513)
+...+-+.|
T Consensus 275 lvdlle~~G 283 (393)
T PRK14503 275 IVYLLEEYG 283 (393)
T ss_pred HHHHHHHhC
Confidence 766666554
No 88
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=97.29 E-value=0.003 Score=61.14 Aligned_cols=191 Identities=12% Similarity=0.113 Sum_probs=101.0
Q ss_pred CCcEEEEEeccCCh-HHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHH------HHHHHHHHhhccCccEEEEEcC--
Q 041333 96 YPMVLVQIPMFNER-EVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKD------MVELECQRWASKGINIKYEVRD-- 166 (513)
Q Consensus 96 ~P~VsIiIP~yne~-~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~------l~~~~~~~~~~~~~~v~~~~~~-- 166 (513)
.-...|+|||.||+ ..++..|.++ |.+..+| |+.||+.+..+. +++.+|+. .+.++..+|..
T Consensus 49 ~~~maIVVP~KdE~l~lleGVL~gI-----Ph~c~iI-vVSNS~r~~~d~f~~E~d~~~~f~~~---t~r~~i~vHQkDp 119 (381)
T TIGR02460 49 LGKTAIVVPVKNEKLHLLEGVLSGI-----PHECPII-IVSNSKREPPDRFKMEVDLIRHFSNL---THRKIIIIHQKDP 119 (381)
T ss_pred HhCcEEEEEcCCCchhHHhhHhhcC-----CCCCeEE-EEeCCCCCChhHHHHHHHHHHHHHHh---hcCceEEEEcCCH
Confidence 34689999999999 5555555433 5555555 666665432221 22222221 12334444431
Q ss_pred --------------------CCCCCChhHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHH---H-hcCCCeeEEE
Q 041333 167 --------------------NRKGYKAGALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPF---L-VHNPQLALVQ 222 (513)
Q Consensus 167 --------------------~~~g~Ka~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~---~-~~~~~v~~V~ 222 (513)
-++ ||+.++-.|+-.|.....+||-|+|||..+|-..-+.+..+ | .+.....+|-
T Consensus 120 ~la~Af~~~gy~~il~~~g~VR~-GKgEGMiiG~lLAk~~g~~YVGFiDaDNyiPGaV~EYvk~yAaGf~ma~spy~MVR 198 (381)
T TIGR02460 120 ALAEAFKEVGYTSILGENGRVRS-GKGEGMLLGLLLAKAIGAEYVGFVDADNYFPGAVNEYVKIYAAGFLMATSPYSMVR 198 (381)
T ss_pred HHHHHHHHcCchhhhCCCCceec-CcchHHHHHHHHHHHhCCceEeEeecccCCCchHHHHHHHHHhhhcccCCCCeeEE
Confidence 123 59999999988876668999999999988875544443322 2 1222234554
Q ss_pred eeEEEecC---------CCchHHHHHHhhhcchhhHHhhhcccCCCcccc--ccceeeeeHHHHHHcCCCCCCCccchHH
Q 041333 223 ARWEFVNA---------DECLMTRLQEMSLDYHFTVEQEVGSSTHAFFGF--NGTAGVWRIAAVNEAGGWKDRTTVEDMD 291 (513)
Q Consensus 223 ~~~~~~n~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~G~~~~~rr~~l~~~gg~~~~~~~ED~~ 291 (513)
-.|.+... ...-.+...+..++..+.. .........- ++.=-+.+++.++.+ .|......|-..
T Consensus 199 i~W~~KPKv~~~~lyF~~~GRVSElvnr~LN~l~~~----~~gfet~ii~TGnAGEhAmt~~La~~l-~f~tGYaVEp~~ 273 (381)
T TIGR02460 199 IHWRYKPKLTKGTLYFRKWGRVSEITNHYLNLLISE----HTGFETDIIKTGNAGEHALTMKLAEIL-PFSSGYSVEPYE 273 (381)
T ss_pred EEecCCCceecCeEEEcCCCchhHHHHHHHHHHHHh----hccccCcceecccchhhhhhHHHHhhC-CCCCCccccHHH
Confidence 44443211 0111222222112221111 0111111111 122346788888887 677767777777
Q ss_pred HHHHHhhCCC
Q 041333 292 LAVRASLKGW 301 (513)
Q Consensus 292 l~~rl~~~G~ 301 (513)
+...+-+.|.
T Consensus 274 lvdlle~~G~ 283 (381)
T TIGR02460 274 LVYILERFGG 283 (381)
T ss_pred HHHHHHHhcC
Confidence 7777766653
No 89
>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases. The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=97.27 E-value=0.00032 Score=53.95 Aligned_cols=49 Identities=22% Similarity=0.165 Sum_probs=35.5
Q ss_pred cccceeeeeHHHHHHcCCCCCCC---ccchHHHHHHHhhCCCeEEEeccccc
Q 041333 263 FNGTAGVWRIAAVNEAGGWKDRT---TVEDMDLAVRASLKGWKFLYLGTVKV 311 (513)
Q Consensus 263 ~~G~~~~~rr~~l~~~gg~~~~~---~~ED~~l~~rl~~~G~~i~~~~~~~~ 311 (513)
+.|++.+++|+.++++|||++.. ..||.|+..|+..+|.++...+....
T Consensus 19 ~~Gg~~~~~~~~f~~vnGfde~f~gWG~ED~Dl~~Rl~~~g~~~~~~~~~~~ 70 (78)
T PF02709_consen 19 FFGGVFAISREDFEKVNGFDERFWGWGGEDDDLYNRLWKAGLKIVRVPGSIG 70 (78)
T ss_dssp ---SEEEEEHHHHHHTTSS-SS-TSCSSHHHHHHHHHHHTT---B-SSTTTT
T ss_pred eeEEEEEEeHHHHHHcCCCCccccccCccHHHHHHHHHHcCCeEEecCCceE
Confidence 56999999999999999999976 56999999999999999877665443
No 90
>KOG3916 consensus UDP-Gal:glucosylceramide beta-1,4-galactosyltransferase [Carbohydrate transport and metabolism]
Probab=97.07 E-value=0.0033 Score=60.68 Aligned_cols=179 Identities=19% Similarity=0.191 Sum_probs=107.1
Q ss_pred cEEEEEeccCChHHHHHHHHHHH----cCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCC-CCC
Q 041333 98 MVLVQIPMFNEREVYQLSIGAAC----GLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRK-GYK 172 (513)
Q Consensus 98 ~VsIiIP~yne~~~l~~~l~sl~----~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~-g~K 172 (513)
+|.||||-+|.++.+...+..+. +|.- +.++.+++...+. -.+
T Consensus 152 kvAIIIPfR~Re~HL~~~l~~LhP~LqrQrL--------------------------------~y~iyVieQ~g~~~FNR 199 (372)
T KOG3916|consen 152 KVAIIIPFRNREEHLRYLLHHLHPFLQRQRL--------------------------------DYRIYVIEQAGNKPFNR 199 (372)
T ss_pred eeEEEeecccHHHHHHHHHHHhhHHHHhhhh--------------------------------ceeEEEEEecCCCcccH
Confidence 69999999999988887776553 1211 1223333222211 125
Q ss_pred hhHHHHHHHhccc-CCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHh
Q 041333 173 AGALREGMKRGYV-KSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQ 251 (513)
Q Consensus 173 a~aln~gl~~a~~-~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ 251 (513)
|.-+|.|...|.. ..-|-++|-|-|..|..|. ++...- ..|. .+...+..+.+...
T Consensus 200 akL~NVGf~eAlkd~~wdCfIFHDVDllPenDr--NlY~C~-~~PR---------------H~sva~dk~gy~LP----- 256 (372)
T KOG3916|consen 200 AKLLNVGFLEALKDYGWDCFIFHDVDLLPENDR--NLYGCP-EQPR---------------HMSVALDKFGYRLP----- 256 (372)
T ss_pred HHhhhhHHHHHHHhcCCCEEEEecccccccCCC--CccCCC-CCCc---------------chhhhhhhcccccc-----
Confidence 5667888877754 4678899999999987651 111111 1111 11111111111110
Q ss_pred hhcccCCCccccccceeeeeHHHHHHcCCCCCCC---ccchHHHHHHHhhCCCeEEEeccccc-----cc------ccCc
Q 041333 252 EVGSSTHAFFGFNGTAGVWRIAAVNEAGGWKDRT---TVEDMDLAVRASLKGWKFLYLGTVKV-----KN------ELPS 317 (513)
Q Consensus 252 ~~~~~~~~~~~~~G~~~~~rr~~l~~~gg~~~~~---~~ED~~l~~rl~~~G~~i~~~~~~~~-----~~------~~p~ 317 (513)
... +-|+-.+..++-++++.||+... .+||=|+..|++.+|+++---+-.+. .| .-|.
T Consensus 257 -----Y~~---~FGGVsalt~~qf~kINGFsN~fWGWGGEDDDl~nRv~~ag~~IsRp~~~igrYkMikH~~k~n~~n~~ 328 (372)
T KOG3916|consen 257 -----YKE---YFGGVSALTKEQFRKINGFSNAFWGWGGEDDDLWNRVQLAGMKISRPPPEIGRYKMIKHHDKGNEPNPG 328 (372)
T ss_pred -----chh---hhCchhhccHHHHHHhcCCCchhcccCCcchHHHHHHHhcCceeecCCCccceeEEeecccccCCCChH
Confidence 011 23667789999999999999876 78999999999999998843322111 11 1234
Q ss_pred CHHHHHHHHHhhhhchhHHHHh
Q 041333 318 TFKAYRYQQHRWSCGPANLFRK 339 (513)
Q Consensus 318 ~~~~~~~Qr~RW~~G~~~~~~~ 339 (513)
.++-+.+-..||....+..+..
T Consensus 329 Ry~lL~~tk~r~~~DGLnsl~Y 350 (372)
T KOG3916|consen 329 RYKLLRNTKERQTQDGLNSLKY 350 (372)
T ss_pred HHHHHHhhhhhhhhccccceee
Confidence 4556666678888887766543
No 91
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=96.98 E-value=0.0049 Score=49.62 Aligned_cols=81 Identities=19% Similarity=0.059 Sum_probs=51.1
Q ss_pred cCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCC--C-CChhHHHHHHHh
Q 041333 106 FNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRK--G-YKAGALREGMKR 182 (513)
Q Consensus 106 yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~--g-~Ka~aln~gl~~ 182 (513)
+||+..|.+.|..-.++... ++.| ++|+|+|+|.+.+.+ + .++.++....+. . .+...++...+.
T Consensus 1 rne~~~L~~wl~~~~~lG~d--~i~i-~d~~s~D~t~~~l~~-----~----~~v~i~~~~~~~~~~~~~~~~~~~~~~~ 68 (97)
T PF13704_consen 1 RNEADYLPEWLAHHLALGVD--HIYI-YDDGSTDGTREILRA-----L----PGVGIIRWVDPYRDERRQRAWRNALIER 68 (97)
T ss_pred CChHHHHHHHHHHHHHcCCC--EEEE-EECCCCccHHHHHHh-----C----CCcEEEEeCCCccchHHHHHHHHHHHHh
Confidence 69999999999999887653 4444 777899999885532 2 224444333221 1 122334444443
Q ss_pred cccCCCcEEEEEcCCCCC
Q 041333 183 GYVKSCDFVVIFDADFQP 200 (513)
Q Consensus 183 a~~~~~d~I~~lDaD~~~ 200 (513)
. .++|+++++|+|-.+
T Consensus 69 ~--~~~dWvl~~D~DEfl 84 (97)
T PF13704_consen 69 A--FDADWVLFLDADEFL 84 (97)
T ss_pred C--CCCCEEEEEeeeEEE
Confidence 2 389999999999544
No 92
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=96.66 E-value=0.017 Score=62.03 Aligned_cols=103 Identities=18% Similarity=0.251 Sum_probs=65.0
Q ss_pred CcEEEEEeccCCh-HHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHH------HHHHHHHHhhccCccEEEEEcC---
Q 041333 97 PMVLVQIPMFNER-EVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKD------MVELECQRWASKGINIKYEVRD--- 166 (513)
Q Consensus 97 P~VsIiIP~yne~-~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~------l~~~~~~~~~~~~~~v~~~~~~--- 166 (513)
-...|+||+.||+ ..++-.|.++ |.+..+| |+.+|+.+..+. +++.+|+. ...++..+|..
T Consensus 55 ~~~aivvp~k~e~~~~~~gvl~~i-----p~~c~ii-~vsns~r~~~d~~~~e~~~~~~~~~~---~~~~~~~vhq~dp~ 125 (694)
T PRK14502 55 KKMAIVLPIKDEDLKVFEGVLSGI-----PHDCLMI-VISNSSKQEVDNFKNEKDIVNRFCRI---THRQAIVVHQKNPE 125 (694)
T ss_pred hCcEEEEEcCCCchhHHhhHhhcC-----CCCCeEE-EEeCCCCCchHHHHHHHHHHHHHHHh---hcCceEEEEcCCHH
Confidence 4689999999999 5555555433 5555555 677766433222 22222221 12233344331
Q ss_pred -------------------CCCCCChhHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHH
Q 041333 167 -------------------NRKGYKAGALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTI 209 (513)
Q Consensus 167 -------------------~~~g~Ka~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~ 209 (513)
-++ ||+.++-.|+-.|.....+||-|+|||..+|-..-+.+.
T Consensus 126 ~a~a~~~~g~~~~~~~~~~vr~-gk~egm~~g~~la~~~g~~yvgfidadny~pg~v~ey~~ 186 (694)
T PRK14502 126 LANAIADAGYPELLGEDGLIRS-GKAEGMILGIILTMFSGRDYVGFIDTDNYIPGAVWEYAK 186 (694)
T ss_pred HHHHHHHcCChhhhCCCCceec-CcchHHHHHHHHHHhcCCceEeEeeccCCCCchHHHHHH
Confidence 123 599999999988866789999999999988765555443
No 93
>PF11316 Rhamno_transf: Putative rhamnosyl transferase ; InterPro: IPR021466 This bacterial family of proteins has no known function.
Probab=96.52 E-value=0.024 Score=53.47 Aligned_cols=93 Identities=14% Similarity=0.069 Sum_probs=61.6
Q ss_pred HHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHHhcccCCCcEEE
Q 041333 113 QLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMKRGYVKSCDFVV 192 (513)
Q Consensus 113 ~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~~a~~~~~d~I~ 192 (513)
.-||.|+.+|+-|++..+|++.++..++-.+ -+++.++. -++++.+..+... ...++...++.+.....++++
T Consensus 45 ~~~LpSl~~QTd~dF~~lv~~~~~~P~~~~~-rL~~l~~~----~p~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 117 (234)
T PF11316_consen 45 TYCLPSLRAQTDQDFTWLVLFDDDLPEPYRE-RLRDLLAD----YPQFRIVFRPPGP--HRDAMRRAINAARRDGADPVL 117 (234)
T ss_pred HHHhhHHHhccCCCeEEEEEECCCCCHHHHH-HHHHHhcc----CCCcEEEecCCch--HHHHHHHHHhhhccCCCCEEE
Confidence 3589999999999888877444444443333 33333333 2445555554333 456777777554444677666
Q ss_pred EE--cCCCCCChHHHHHHHHHH
Q 041333 193 IF--DADFQPESDFLTRTIPFL 212 (513)
Q Consensus 193 ~l--DaD~~~~pd~L~~l~~~~ 212 (513)
.+ |+|+-++.|+++++-...
T Consensus 118 ~~RLDdDDAl~~dFV~rlr~~a 139 (234)
T PF11316_consen 118 QFRLDDDDALHRDFVARLRRAA 139 (234)
T ss_pred EEEECCcchhhHHHHHHHHHHH
Confidence 65 999999999999998886
No 94
>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []. It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction
Probab=96.07 E-value=0.007 Score=58.51 Aligned_cols=97 Identities=22% Similarity=0.256 Sum_probs=55.4
Q ss_pred cEEEEEeccCCh-HHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcC---------C
Q 041333 98 MVLVQIPMFNER-EVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRD---------N 167 (513)
Q Consensus 98 ~VsIiIP~yne~-~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~---------~ 167 (513)
.|+|+||+-+.. ...-+.-+.+.+ ++.++| |-|+...+..+ + ..|.+..+..+. .
T Consensus 9 ~~divi~~~~~~l~~~~~~wr~~~~----~~hlii-v~d~~~~~~~~-~---------p~g~~~~~y~~~di~~~lg~~~ 73 (348)
T PF03214_consen 9 EVDIVIPALRPNLTDFLEEWRPFFS----PYHLII-VQDPDPNEEIK-V---------PEGFDYEVYNRNDIERVLGAKT 73 (348)
T ss_pred cccEEeecccccHHHHHHHHHHhhc----ceeEEE-EeCCCcccccc-C---------CcccceeeecHhhHHhhcCCcc
Confidence 488999998743 222233344433 244544 55553322222 1 123333333221 1
Q ss_pred CCCCCh-hHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHH
Q 041333 168 RKGYKA-GALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFL 212 (513)
Q Consensus 168 ~~g~Ka-~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~ 212 (513)
...+|. ..+|.|+-.+ +.||++++|+|+.|..|.....+..+
T Consensus 74 ~i~~~~~a~R~fGyL~s---~~~yivsiDDD~~P~~D~~g~~~~~v 116 (348)
T PF03214_consen 74 LIPFKGDACRNFGYLVS---KKDYIVSIDDDCLPAKDDFGTHIDAV 116 (348)
T ss_pred cccccccchhhhHhhhc---ccceEEEEccccccccCCccceehhh
Confidence 122333 3478999998 89999999999999877666655554
No 95
>PF01644 Chitin_synth_1: Chitin synthase; InterPro: IPR004834 This region is found commonly in chitin synthases classes I, II and III 2.4.1.16 from EC. Chitin a linear homopolymer of GlcNAc residues, it is an important component of the cell wall of fungi and is synthesised on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases []. ; GO: 0004100 chitin synthase activity, 0006031 chitin biosynthetic process
Probab=95.96 E-value=0.086 Score=46.28 Aligned_cols=43 Identities=12% Similarity=0.129 Sum_probs=31.7
Q ss_pred CCCCCCChhHH----HHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHH
Q 041333 166 DNRKGYKAGAL----REGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFL 212 (513)
Q Consensus 166 ~~~~g~Ka~al----n~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~ 212 (513)
++|.+ |-..- |...+.. +.++++++|+.+.|.++.|.++...|
T Consensus 117 e~N~k-KinSHrWfFnaf~~~l---~P~vcvllDvGT~P~~~siy~Lwkaf 163 (163)
T PF01644_consen 117 EKNAK-KINSHRWFFNAFCRQL---QPNVCVLLDVGTKPGKDSIYHLWKAF 163 (163)
T ss_pred ccccc-ccchhhHHHHHHHhhc---CCcEEEEEecCCCcCchHHHHHHhhC
Confidence 33433 65554 4444445 99999999999999999999987654
No 96
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=95.81 E-value=0.031 Score=53.82 Aligned_cols=103 Identities=20% Similarity=0.133 Sum_probs=70.0
Q ss_pred cEEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEc--CCCCC----C
Q 041333 98 MVLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVR--DNRKG----Y 171 (513)
Q Consensus 98 ~VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~--~~~~g----~ 171 (513)
.++-.|-+.||+..++++|+|++..- ++.+| .-+||+|+|.+ ++.+.|+++++. .++.|-.. ..+.. .
T Consensus 88 ~~~~~iRvKnE~~tl~~si~S~Lpai---~~gVI-~yNdc~D~t~E-iil~fckkyP~f-ip~~Ypy~v~~~n~~~~~n~ 161 (347)
T PF06306_consen 88 NPWAFIRVKNEAMTLAESIESILPAI---DEGVI-GYNDCTDGTEE-IILEFCKKYPSF-IPIKYPYEVIIKNPKSEENS 161 (347)
T ss_pred CcceEEEEcchhhhHHHHHHHHHHHH---hccEE-EeecCCCCHHH-HHHHHHHhCccc-ccccCcchhhccCCchhhhh
Confidence 57789999999999999999998421 34444 88999999966 677889988652 33333211 11111 1
Q ss_pred ChhHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHH
Q 041333 172 KAGALREGMKRGYVKSCDFVVIFDADFQPESDFLTRT 208 (513)
Q Consensus 172 Ka~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l 208 (513)
+..=.|.++... ++.+|++=+|+|.+.+++-|.+.
T Consensus 162 l~~YYNy~ls~i--pk~~w~iKID~DhIy~~~KL~ks 196 (347)
T PF06306_consen 162 LYNYYNYVLSFI--PKNEWAIKIDADHIYDTKKLYKS 196 (347)
T ss_pred hhhhhhhhhccc--ccceEEEEeccceeecHHHHhhh
Confidence 222345555543 47899999999999998876443
No 97
>KOG1413 consensus N-acetylglucosaminyltransferase I [Carbohydrate transport and metabolism]
Probab=95.79 E-value=0.15 Score=49.81 Aligned_cols=175 Identities=17% Similarity=0.104 Sum_probs=102.4
Q ss_pred CCCcEEEEEeccCChHHHHHHHHHHHcCCCCC-CeeEEEEEeCCCchhHHHHHHHHHHHhh--ccC----ccEEEEEcCC
Q 041333 95 SYPMVLVQIPMFNEREVYQLSIGAACGLSWPS-DRLIIQVLDDSTDLTIKDMVELECQRWA--SKG----INIKYEVRDN 167 (513)
Q Consensus 95 ~~P~VsIiIP~yne~~~l~~~l~sl~~q~yp~-~~i~IiV~Dds~D~t~~~l~~~~~~~~~--~~~----~~v~~~~~~~ 167 (513)
..|.+.|++=++|.++.++++++.++.+. |. ++.-|+|..|+.++.+...++...++.. ++. ..+.+-.+++
T Consensus 65 ~~~v~pvvVf~csR~~~lr~~v~kll~yr-PsaekfpiiVSQD~~~e~vk~~~~~~g~~v~~i~~~~h~~~ei~v~~~~~ 143 (411)
T KOG1413|consen 65 WPPVIPVVVFACSRADALRRHVKKLLEYR-PSAEKFPIIVSQDCEKEAVKKKLLSYGSDVSHIQHPMHLKDEISVPPRHK 143 (411)
T ss_pred CCCceeEEEEecCcHHHHHHHHHHHHHhC-cchhhcCEEEeccCCcHHHHHHHHHhccchhhhcCccccccccccCCccc
Confidence 34567899999999999999999999887 54 3455668888877766655543322110 000 1111111111
Q ss_pred -CCCCCh------hHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHH---HHHHhcCCCeeEEEeeEEEecCCCchHHH
Q 041333 168 -RKGYKA------GALREGMKRGYVKSCDFVVIFDADFQPESDFLTRT---IPFLVHNPQLALVQARWEFVNADECLMTR 237 (513)
Q Consensus 168 -~~g~Ka------~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l---~~~~~~~~~v~~V~~~~~~~n~~~~~~~~ 237 (513)
.++++. .|+|..+..- +.+.+++.-+|--..|||.... ...++.||.+-+|+.-- .|..+..+..
T Consensus 144 k~~~Yy~IarHYkwAL~q~F~~~---~~s~vii~eDDl~iapDFF~YF~~t~~llk~D~siwcvsaWN--DNGk~~~Id~ 218 (411)
T KOG1413|consen 144 KFNAYYKIARHYKWALNQLFIVF---RESRVIITEDDLNIAPDFFSYFRNTIILLKGDPSIWCVSAWN--DNGKKQTIDS 218 (411)
T ss_pred ccchhHHHHHHHHHHHhhHHhhc---CCceeEEecchhhhhhHHHHHHHHHHHHHhcCCceEEeeeec--cCCCcccccc
Confidence 122222 2456666555 8999999999999999987664 45567788877775431 1222211111
Q ss_pred HHHhhhcchhhHHhhhcccCCCccccccceeeeeHHHHHHcCC-CCCCCccchH
Q 041333 238 LQEMSLDYHFTVEQEVGSSTHAFFGFNGTAGVWRIAAVNEAGG-WKDRTTVEDM 290 (513)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~gg-~~~~~~~ED~ 290 (513)
...+.......|.|-+-++.++.++|... |+. ..-||+
T Consensus 219 --------------~~~~~lYRtDFFpGLGWml~~~~W~ELsp~wP~-~fWDDW 257 (411)
T KOG1413|consen 219 --------------TRPSLLYRTDFFPGLGWMLTKKLWEELSPKWPV-AFWDDW 257 (411)
T ss_pred --------------cccchhhhccccccchHHHHHHHHHhhCCCCcc-cchhhh
Confidence 00111112223668888999999998753 432 234444
No 98
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=95.50 E-value=0.049 Score=52.06 Aligned_cols=169 Identities=12% Similarity=0.105 Sum_probs=88.9
Q ss_pred EEEEEec-cCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHH
Q 041333 99 VLVQIPM-FNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALR 177 (513)
Q Consensus 99 VsIiIP~-yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln 177 (513)
.||+|-+ |+..+.|.+.++++.+..+- .+++|+=.++.+.++. .++...+..++++..+++ .-.++-
T Consensus 1 fTvvi~t~~~R~~~L~~~l~~l~~~~~l-~~IvVvWn~~~~~P~~--------~~~~~~~vpV~~~~~~~n---sLnnRF 68 (247)
T PF09258_consen 1 FTVVINTSYKRSDLLKRLLRHLASSPSL-RKIVVVWNNPNPPPPS--------SKWPSTGVPVRVVRSSRN---SLNNRF 68 (247)
T ss_dssp EEEEEEE-SS-HHHHHHHHHHHTTSTTE-EEEEEEEE-TS--THH--------HHHT---S-EEEEEESSH---HGGGGG
T ss_pred CEEEEEecccchHHHHHHHHHHHcCCCC-CeEEEEeCCCCCCCcc--------cccCCCCceEEEEecCCc---cHHhcC
Confidence 3788999 99999999999999766543 2444433333222222 123344577888864432 122333
Q ss_pred HHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEE--EecCCCchHHHHHHhhhcchhhHHhhhcc
Q 041333 178 EGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWE--FVNADECLMTRLQEMSLDYHFTVEQEVGS 255 (513)
Q Consensus 178 ~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~--~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (513)
.-.... +.|-|+.+|+|..++++.|+......+++|+ .+|+...+ ..+.+.+ .+.+.. .
T Consensus 69 ~p~~~i---~T~AVl~~DDDv~~~~~~l~faF~~W~~~pd-rlVGf~~R~h~~~~~~~--------~~~Y~~-------~ 129 (247)
T PF09258_consen 69 LPDPEI---ETDAVLSLDDDVMLSCDELEFAFQVWREFPD-RLVGFPPRSHSWDPSSG--------RWKYTS-------E 129 (247)
T ss_dssp S--TT-----SSEEEEEETTEEE-HHHHHHHHHHHCCSTT-SEEES-EEEEEEE-ETT--------EEEEE--------S
T ss_pred cCcccc---CcceEEEecCCcccCHHHHHHHHHHHHhChh-heeCCccceeecCCCcc--------cccccc-------C
Confidence 344555 8999999999999999999999988877776 34443333 2232111 111110 0
Q ss_pred cCCCccccccceeeeeHHHHHHcCCC---------CCCCccchHHHHHHHhh
Q 041333 256 STHAFFGFNGTAGVWRIAAVNEAGGW---------KDRTTVEDMDLAVRASL 298 (513)
Q Consensus 256 ~~~~~~~~~G~~~~~rr~~l~~~gg~---------~~~~~~ED~~l~~rl~~ 298 (513)
..+.....-..++++.|+.++..-.. ++..-+||..+.+-+..
T Consensus 130 ~~~~ySmvLt~aaf~h~~yl~~Y~~~~p~~~r~~Vd~~~NCEDI~mNflvs~ 181 (247)
T PF09258_consen 130 WSNEYSMVLTGAAFYHRYYLELYTHWLPASIREYVDEHFNCEDIAMNFLVSN 181 (247)
T ss_dssp SS--BSEE-TTEEEEETHHHHHHHT-S-HHHHHHHHHHTS-HHHHHHHHHHH
T ss_pred CCCcchhhhhhhHhhcchHHHHHhcCcHHHHHHHHhccCCHHHHHHHHHHHH
Confidence 11111112245567777776654221 11236899999887753
No 99
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=95.47 E-value=0.13 Score=47.18 Aligned_cols=175 Identities=14% Similarity=0.080 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHcCCCCCCeeEEEEEeCCC--chhHHHHHHHHHHHhhccCccEEEEEcCC---CCCCC-hhHHHHHHHhc
Q 041333 110 EVYQLSIGAACGLSWPSDRLIIQVLDDST--DLTIKDMVELECQRWASKGINIKYEVRDN---RKGYK-AGALREGMKRG 183 (513)
Q Consensus 110 ~~l~~~l~sl~~q~yp~~~i~IiV~Dds~--D~t~~~l~~~~~~~~~~~~~~v~~~~~~~---~~g~K-a~aln~gl~~a 183 (513)
+.|++|-.+-..+.-.+-++ ++|+-.+. |++.+..++++.++| .++......+ +...| ..+++.+.+.+
T Consensus 4 ~~IR~TW~~~~~~~~~~~~~-~FvvG~~~~~~~~~~~~l~~E~~~y----~Dil~~d~~D~y~nlt~K~~~~~~w~~~~c 78 (195)
T PF01762_consen 4 QAIRETWGNQRNFKGVRVKV-VFVVGESPNSDSDLQEALQEEAEKY----GDILQGDFVDSYRNLTLKTLAGLKWASKHC 78 (195)
T ss_pred HHHHHHHhcccccCCCcEEE-EEEEecCCCCcHHHHHHhhhhhhhc----CceEeeecccccchhhHHHHHHHHHHHhhC
Confidence 56677666555433333344 33554444 555555444443333 3344433322 22223 24567777776
Q ss_pred ccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEe-----cCCCchHHHHHHhhhcchhhHHhhhcccCC
Q 041333 184 YVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFV-----NADECLMTRLQEMSLDYHFTVEQEVGSSTH 258 (513)
Q Consensus 184 ~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~-----n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (513)
++.+|++.+|+|+.+.++-|.+.+.....++.-..+.|..... ++...|.- .... -....
T Consensus 79 --~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v-----------~~~~--y~~~~ 143 (195)
T PF01762_consen 79 --PNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYV-----------SEEE--YPDDY 143 (195)
T ss_pred --CchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCcee-----------eeee--ccccc
Confidence 2599999999999998888777666541222222222222111 11111100 0000 00011
Q ss_pred CccccccceeeeeHHHHHHcCCCC---CCCccchHHHHHHHhhCCCeEE
Q 041333 259 AFFGFNGTAGVWRIAAVNEAGGWK---DRTTVEDMDLAVRASLKGWKFL 304 (513)
Q Consensus 259 ~~~~~~G~~~~~rr~~l~~~gg~~---~~~~~ED~~l~~rl~~~G~~i~ 304 (513)
-+..++|.+.++++++++.+.-.. .....||..++.-+.+.|.+..
T Consensus 144 yP~y~~G~~yvls~~~v~~i~~~~~~~~~~~~eDv~iGi~~~~~~i~~~ 192 (195)
T PF01762_consen 144 YPPYCSGGGYVLSSDVVKRIYKASSHTPFFPLEDVFIGILAEKLGIKPI 192 (195)
T ss_pred CCCcCCCCeEEecHHHHHHHHHHhhcCCCCCchHHHHHHHHHHCCCCcc
Confidence 122256999999999998764322 2236799999999999887653
No 100
>PF11397 GlcNAc: Glycosyltransferase (GlcNAc); InterPro: IPR021067 GlcNAc is an enzyme that carries out the first glycosylation step of hydroxylated Skp1; it is found in the cytoplasm and results in a pentasaccharide-linked 'HyPro-143[, ].
Probab=94.61 E-value=0.23 Score=49.70 Aligned_cols=210 Identities=14% Similarity=0.116 Sum_probs=112.4
Q ss_pred EEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeC--CCchh-HHH---------------HHHHHHH-----Hh--
Q 041333 99 VLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDD--STDLT-IKD---------------MVELECQ-----RW-- 153 (513)
Q Consensus 99 VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dd--s~D~t-~~~---------------l~~~~~~-----~~-- 153 (513)
|=|.|+.|...+ ...||.++.++.-.++++.|-|++. ..|+. ... ......+ .+
T Consensus 2 IFvsiasyRD~~-c~~Tl~~~~~~A~~P~r~~~gv~~Q~~~~~~~c~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 80 (343)
T PF11397_consen 2 IFVSIASYRDPE-CAPTLKDLFARATNPERLFVGVVWQHYEEDPPCLSEGAPMDPGVHAAREEECVYCFLASSACAEWPD 80 (343)
T ss_pred EEEEEeeecCch-HHHHHHHHHHhcCCCceEEEEEEEEecCCCCcccccccccccccccccccchhhhhhhccccccccc
Confidence 568899999875 7888888886654447777766654 22222 100 0000000 00
Q ss_pred ---hccCccEEEEEcC--CCCCCChhHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcC-CCeeEEEeeEEE
Q 041333 154 ---ASKGINIKYEVRD--NRKGYKAGALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHN-PQLALVQARWEF 227 (513)
Q Consensus 154 ---~~~~~~v~~~~~~--~~~g~Ka~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~-~~v~~V~~~~~~ 227 (513)
...+.+|++++.+ +..| -..|++.+.+.- ..-+|++.+|+.+...++|=+.++..+++- ..-++.++....
T Consensus 81 ~~~~~~~~~Ir~~~~~~~~a~G-p~~AR~la~~l~--~gE~y~LqiDSH~rF~~~WD~~li~~~~~~~~~~aVLS~YP~~ 157 (343)
T PF11397_consen 81 GALCLRSDQIRVIRVDASEARG-PCWARYLAQKLY--RGEDYYLQIDSHMRFVPGWDEILIEMLKSLRNPKAVLSTYPPG 157 (343)
T ss_pred ccccccCCeEEEEEeCHHHCcC-hHHHHHHHHHHh--CCCeEEEEEeccceeeccHHHHHHHHHHhcCCCCeEEecCCCC
Confidence 0123455555544 3445 567788777766 257899999999999999988888766432 233444443322
Q ss_pred ecC-C------CchHHHHHHhhhc-chh-hHHh---hhccc--CCCccccccceeeee-HHHHHHcCCCCCCC----ccc
Q 041333 228 VNA-D------ECLMTRLQEMSLD-YHF-TVEQ---EVGSS--THAFFGFNGTAGVWR-IAAVNEAGGWKDRT----TVE 288 (513)
Q Consensus 228 ~n~-~------~~~~~~~~~~~~~-~~~-~~~~---~~~~~--~~~~~~~~G~~~~~r-r~~l~~~gg~~~~~----~~E 288 (513)
.+. + .+....+...... ... .... ..... .-....+-+++.+|. -++++++ .+|+.. .+|
T Consensus 158 ~~~~~~~~~~~~~~~~~lc~~~~~~~g~~~~~~~~~~~~~~~~~P~~~~f~aaGF~Fa~~~~~~eV-P~DP~lp~lF~GE 236 (343)
T PF11397_consen 158 YEPDGGQPEPEKTTVPRLCAARFGPDGMVRLGARWIKPAPKLEEPVPQPFWAAGFSFAPGHFVREV-PYDPHLPFLFDGE 236 (343)
T ss_pred cccccCCccccCCcccEEEEeEECCCCcEeecceecccccccCCCeeeceecccEEEcchhheecC-CCCCCcccccccH
Confidence 222 0 0000000000000 000 0000 00000 001112335555554 4555565 777765 789
Q ss_pred hHHHHHHHhhCCCeEEEeccccccc
Q 041333 289 DMDLAVRASLKGWKFLYLGTVKVKN 313 (513)
Q Consensus 289 D~~l~~rl~~~G~~i~~~~~~~~~~ 313 (513)
++-++.|+.-+||.+..-+..+++|
T Consensus 237 E~~~aaRlwT~GYD~Y~P~~~v~~H 261 (343)
T PF11397_consen 237 EISMAARLWTHGYDFYSPTRNVLFH 261 (343)
T ss_pred HHHHHHHHHHcCCccccCCCceeEE
Confidence 9999999999999985444555544
No 101
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=94.21 E-value=0.41 Score=43.12 Aligned_cols=93 Identities=17% Similarity=0.230 Sum_probs=58.2
Q ss_pred CChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHHhcccC
Q 041333 107 NEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMKRGYVK 186 (513)
Q Consensus 107 ne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~~a~~~ 186 (513)
+....++.+++.+.+.. .++++| |.++. +....... .+.++.++..+....|-..++..|++.+..
T Consensus 24 ~g~~li~~~i~~l~~~~--~~~i~v-v~~~~-~~~~~~~~---------~~~~~~~~~~~~~~~G~~~~i~~al~~~~~- 89 (186)
T cd04182 24 DGKPLLRHALDAALAAG--LSRVIV-VLGAE-ADAVRAAL---------AGLPVVVVINPDWEEGMSSSLAAGLEALPA- 89 (186)
T ss_pred CCeeHHHHHHHHHHhCC--CCcEEE-ECCCc-HHHHHHHh---------cCCCeEEEeCCChhhCHHHHHHHHHHhccc-
Confidence 45568888998887752 234444 44332 21111111 123444454443333467788999998711
Q ss_pred CCcEEEEEcCCC-CCChHHHHHHHHHHh
Q 041333 187 SCDFVVIFDADF-QPESDFLTRTIPFLV 213 (513)
Q Consensus 187 ~~d~I~~lDaD~-~~~pd~L~~l~~~~~ 213 (513)
+.|+++++++|. .++++.+++++..+.
T Consensus 90 ~~~~vlv~~~D~P~i~~~~i~~l~~~~~ 117 (186)
T cd04182 90 DADAVLILLADQPLVTAETLRALIDAFR 117 (186)
T ss_pred cCCEEEEEeCCCCCCCHHHHHHHHHHHH
Confidence 279999999998 568999999998874
No 102
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=94.08 E-value=0.51 Score=42.75 Aligned_cols=96 Identities=17% Similarity=0.189 Sum_probs=59.6
Q ss_pred CChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHH-hccc
Q 041333 107 NEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMK-RGYV 185 (513)
Q Consensus 107 ne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~-~a~~ 185 (513)
+....+..+++.+.+.. .++++| |.++..++ ..+. +. .+.++.++..+....|-..++..|++ ..
T Consensus 23 ~g~pll~~~i~~l~~~~--~~~iiv-v~~~~~~~----~~~~----~~-~~~~v~~v~~~~~~~g~~~si~~~l~~~~-- 88 (188)
T TIGR03310 23 KGKTILEHVVDNALRLF--FDEVIL-VLGHEADE----LVAL----LA-NHSNITLVHNPQYAEGQSSSIKLGLELPV-- 88 (188)
T ss_pred CCeeHHHHHHHHHHHcC--CCcEEE-EeCCcHHH----HHHH----hc-cCCCeEEEECcChhcCHHHHHHHHhcCCC--
Confidence 45668888888887653 234444 44443222 1111 11 12356666554332235677888887 34
Q ss_pred CCCcEEEEEcCCC-CCChHHHHHHHHHHhcCCC
Q 041333 186 KSCDFVVIFDADF-QPESDFLTRTIPFLVHNPQ 217 (513)
Q Consensus 186 ~~~d~I~~lDaD~-~~~pd~L~~l~~~~~~~~~ 217 (513)
+.|.++++++|. .++++.+++++..+..+++
T Consensus 89 -~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~ 120 (188)
T TIGR03310 89 -QSDGYLFLLGDQPFVTPDIIQLLLEAFALKND 120 (188)
T ss_pred -CCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCC
Confidence 679999999997 5699999999987744444
No 103
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=93.71 E-value=0.31 Score=46.76 Aligned_cols=108 Identities=16% Similarity=0.107 Sum_probs=55.2
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHhhhcccCCCccccccc
Q 041333 187 SCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQEVGSSTHAFFGFNGT 266 (513)
Q Consensus 187 ~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 266 (513)
+.||.+++|+|+.+..+-|.+++..+ ||+-...-|......+... ..+.... .....+..++-.|+
T Consensus 86 ~~~Wf~~~DDDtyv~~~~L~~~L~~~--~~~~~~yiG~~~~~~~~~~-~~~~~~~-----------~~~~~~~~f~~GGa 151 (252)
T PF02434_consen 86 DKDWFCFADDDTYVNVENLRRLLSKY--DPSEPIYIGRPSGDRPIEI-IHRFNPN-----------KSKDSGFWFATGGA 151 (252)
T ss_dssp T-SEEEEEETTEEE-HHHHHHHHTTS---TTS--EEE-EE----------------------------------EE-GGG
T ss_pred CceEEEEEeCCceecHHHHHHHHhhC--CCccCEEeeeeccCcccee-ecccccc-----------ccCcCceEeeCCCe
Confidence 67999999999999999999999887 4444444444332221110 0000000 00111112224588
Q ss_pred eeeeeHHHHHHcC------CCCCC----CccchHHHHHHHhh-CCCeEEEecc
Q 041333 267 AGVWRIAAVNEAG------GWKDR----TTVEDMDLAVRASL-KGWKFLYLGT 308 (513)
Q Consensus 267 ~~~~rr~~l~~~g------g~~~~----~~~ED~~l~~rl~~-~G~~i~~~~~ 308 (513)
+.+++|.+++++. .+... ...||+.++.-+.. .|.+....+.
T Consensus 152 G~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~ 204 (252)
T PF02434_consen 152 GYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPL 204 (252)
T ss_dssp -EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT
T ss_pred eHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechh
Confidence 9999999998872 22221 25799999999988 8988876653
No 104
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=93.50 E-value=1.3 Score=41.65 Aligned_cols=158 Identities=16% Similarity=0.166 Sum_probs=82.0
Q ss_pred CChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCC-----CCCCChhHHHHHHH
Q 041333 107 NEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDN-----RKGYKAGALREGMK 181 (513)
Q Consensus 107 ne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~-----~~g~Ka~aln~gl~ 181 (513)
+....+..+++++.+.... ++ |+|..| |+.....+ +++ +..+.+. |+. .. +...++..|++
T Consensus 22 ~GkpLi~~ti~~a~~s~~~-d~--IvVstd--~~~i~~~a----~~~---g~~v~~~-r~~~l~~d~~-~~~~si~~~l~ 87 (222)
T TIGR03584 22 CGKPMIAYSIEAALNSGLF-DK--VVVSTD--DEEIAEVA----KSY---GASVPFL-RPKELADDFT-GTAPVVKHAIE 87 (222)
T ss_pred CCcCHHHHHHHHHHhCCCC-CE--EEEeCC--CHHHHHHH----HHc---CCEeEEe-ChHHHcCCCC-CchHHHHHHHH
Confidence 4556889999998886543 23 324222 22222222 222 3334333 322 22 25667888887
Q ss_pred hccc-CCCcEEEEEcCCCCC-ChHHHHHHHHHHhcCCCeeEEEeeEEEe-cCCCchHHHH-HHhhhcchhhHH-hhhccc
Q 041333 182 RGYV-KSCDFVVIFDADFQP-ESDFLTRTIPFLVHNPQLALVQARWEFV-NADECLMTRL-QEMSLDYHFTVE-QEVGSS 256 (513)
Q Consensus 182 ~a~~-~~~d~I~~lDaD~~~-~pd~L~~l~~~~~~~~~v~~V~~~~~~~-n~~~~~~~~~-~~~~~~~~~~~~-~~~~~~ 256 (513)
.... .+.|.++++++|.-. .++.+.+++..+.+ .+.+.+.+-.... ++ .+.-.. ..-......... ...+..
T Consensus 88 ~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~-~~~ds~~sv~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~rQd 164 (222)
T TIGR03584 88 ELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQ-PNAHFVFSVTSFAFPI--QRAFKLKENGGVEMFFPEHFNTRSQD 164 (222)
T ss_pred HHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHh-CCCCEEEEeeccCCCh--HHheEECCCCcEEecCCCcccCCCCC
Confidence 6421 247999999999755 89999999998854 3343333322211 11 000000 000000000000 011222
Q ss_pred CCCccccccceeeeeHHHHHHcCCC
Q 041333 257 THAFFGFNGTAGVWRIAAVNEAGGW 281 (513)
Q Consensus 257 ~~~~~~~~G~~~~~rr~~l~~~gg~ 281 (513)
....+..+|+..+++++.+.+-+.+
T Consensus 165 ~~~~y~~nga~y~~~~~~~~~~~~~ 189 (222)
T TIGR03584 165 LEEAYHDAGQFYWGKSQAWLESGPI 189 (222)
T ss_pred CchheeeCCeEEEEEHHHHHhcCCc
Confidence 3334456899999999998776544
No 105
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=92.94 E-value=1.5 Score=41.01 Aligned_cols=97 Identities=15% Similarity=0.229 Sum_probs=62.1
Q ss_pred EEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHH
Q 041333 102 QIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMK 181 (513)
Q Consensus 102 iIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~ 181 (513)
++|.-+ ...+..+++++.+.. -.+++|++..+ ++..+... . ..++.++.++...| .++++..|++
T Consensus 20 l~~v~g-kpli~~~i~~l~~~~--i~~i~iv~~~~--~~~i~~~~--------~-~~~~~~~~~~~~~g-~~~ai~~a~~ 84 (229)
T cd02540 20 LHPLAG-KPMLEHVLDAARALG--PDRIVVVVGHG--AEQVKKAL--------A-NPNVEFVLQEEQLG-TGHAVKQALP 84 (229)
T ss_pred cceeCC-ccHHHHHHHHHHhCC--CCeEEEEECCC--HHHHHHHh--------C-CCCcEEEECCCCCC-CHHHHHHHHH
Confidence 345444 478899999988754 23455533222 22222121 1 24566666665555 7889999988
Q ss_pred hcccCCCcEEEEEcCCC-CCChHHHHHHHHHHhc
Q 041333 182 RGYVKSCDFVVIFDADF-QPESDFLTRTIPFLVH 214 (513)
Q Consensus 182 ~a~~~~~d~I~~lDaD~-~~~pd~L~~l~~~~~~ 214 (513)
.... +.|.++++++|. ..+++.+.+++..+.+
T Consensus 85 ~~~~-~~~~vli~~~D~p~~~~~~i~~l~~~~~~ 117 (229)
T cd02540 85 ALKD-FEGDVLVLYGDVPLITPETLQRLLEAHRE 117 (229)
T ss_pred hhcc-CCCeEEEEeCCccccCHHHHHHHHHHHHh
Confidence 7611 268999999998 5688999999887744
No 106
>KOG1476 consensus Beta-1,3-glucuronyltransferase B3GAT1/SQV-8 [Posttranslational modification, protein turnover, chaperones]
Probab=92.81 E-value=1.5 Score=42.37 Aligned_cols=102 Identities=17% Similarity=0.163 Sum_probs=67.1
Q ss_pred CCcEEEEEeccCCh---HHHHHHHHHHHcCCCCCCeeEEEEEeC-CCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCC
Q 041333 96 YPMVLVQIPMFNER---EVYQLSIGAACGLSWPSDRLIIQVLDD-STDLTIKDMVELECQRWASKGINIKYEVRDNRKGY 171 (513)
Q Consensus 96 ~P~VsIiIP~yne~---~~l~~~l~sl~~q~yp~~~i~IiV~Dd-s~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~ 171 (513)
.|.|-||-|+|+.. ..+.+.-.++..- |+- .-|+|-|+ +..+....+++ +.|..-+++..+.+.++
T Consensus 86 ~~~iivVTPTY~R~~q~~~LtRlanTL~~V--~nL-hWIVVEd~~~~~p~v~~~L~-------rtgl~ythl~~~t~~~~ 155 (330)
T KOG1476|consen 86 LPTIIVVTPTYVRPVQAAELTRLANTLRLV--PNL-HWIVVEDGEGTTPEVSGILR-------RTGLPYTHLVHKTPMGY 155 (330)
T ss_pred CccEEEEcccccchhHHHHHHHHHHHHhhc--CCe-eEEEEecCCCCCHHHHHHHH-------HcCCceEEEeccCCCCC
Confidence 67899999999998 3444444444332 332 33436666 45555554544 34677777777767776
Q ss_pred C----hhHHHHHHHhcc-----c-CCCcEEEEEcCCCCCChHHHHH
Q 041333 172 K----AGALREGMKRGY-----V-KSCDFVVIFDADFQPESDFLTR 207 (513)
Q Consensus 172 K----a~aln~gl~~a~-----~-~~~d~I~~lDaD~~~~pd~L~~ 207 (513)
| -..+|.|++... . ...-+|.|-|+|...+-+..++
T Consensus 156 ~~~rg~~qRn~aL~~ir~~~~~~~~~~GVVyFADDdN~YdleLF~e 201 (330)
T KOG1476|consen 156 KARRGWEQRNMALRWIRSRILRHHKLEGVVYFADDDNTYDLELFEE 201 (330)
T ss_pred ccccchhHHHHHHHHHHHhcccccccceEEEEccCCcchhHHHHHH
Confidence 6 458999998874 1 2345778889999988888777
No 107
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=92.29 E-value=2 Score=39.94 Aligned_cols=101 Identities=12% Similarity=0.085 Sum_probs=59.9
Q ss_pred CcEEEEEeccCCh---HHHHHHHHHHHcCCCCCCeeEEEEEeCCCchh--HHHHHHHHHHHhhccCccEEEEEcCCC---
Q 041333 97 PMVLVQIPMFNER---EVYQLSIGAACGLSWPSDRLIIQVLDDSTDLT--IKDMVELECQRWASKGINIKYEVRDNR--- 168 (513)
Q Consensus 97 P~VsIiIP~yne~---~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t--~~~l~~~~~~~~~~~~~~v~~~~~~~~--- 168 (513)
|.|-||-|+|... ..+.+.-..+..-. +- .-| |++|+...| +..+++ +.|...+++..+.+
T Consensus 1 p~i~vVTPTy~R~~Q~~~LtRLa~TL~lVp--~l-~WI-VVEd~~~~t~~va~lL~-------~sgl~y~HL~~~~~~~~ 69 (223)
T cd00218 1 PTIYVVTPTYARPVQKAELTRLAHTLRLVP--PL-HWI-VVEDSEEKTPLVAELLR-------RSGLMYTHLNAKTPSDP 69 (223)
T ss_pred CeEEEECCCCccchhhHHHHHHHHHHhcCC--ce-EEE-EEeCCCCCCHHHHHHHH-------HcCCceEEeccCCCCCc
Confidence 5678899999987 45566656655543 22 334 455443222 222332 23555555433322
Q ss_pred CCC---ChhHHHHHHHhcccC----CCcEEEEEcCCCCCChHHHHHH
Q 041333 169 KGY---KAGALREGMKRGYVK----SCDFVVIFDADFQPESDFLTRT 208 (513)
Q Consensus 169 ~g~---Ka~aln~gl~~a~~~----~~d~I~~lDaD~~~~pd~L~~l 208 (513)
+.. -...+|.|++..... ..-+|.|.|+|...+-+.++++
T Consensus 70 ~~~~~rg~~qRn~AL~~ir~~~~~~~~GVVyFADDdN~Ysl~lF~em 116 (223)
T cd00218 70 TWLKPRGVEQRNLALRWIREHLSAKLDGVVYFADDDNTYDLELFEEM 116 (223)
T ss_pred ccCCcccHHHHHHHHHHHHhccccCcceEEEEccCCCcccHHHHHHH
Confidence 111 145789999987432 3468889999999998888873
No 108
>PLN02917 CMP-KDO synthetase
Probab=91.69 E-value=8.4 Score=37.83 Aligned_cols=183 Identities=14% Similarity=0.108 Sum_probs=90.9
Q ss_pred hHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcC-CCCCCChhHHHHHHHhcccCC
Q 041333 109 REVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRD-NRKGYKAGALREGMKRGYVKS 187 (513)
Q Consensus 109 ~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~-~~~g~Ka~aln~gl~~a~~~~ 187 (513)
...+..+++.+.+... .+. |+|..+ ++..+... ++ .++.++.++ ...++-.++ ..|++... ..
T Consensus 72 kPLL~~vi~~a~~~~~-~~~--VVV~~~--~e~I~~~~----~~-----~~v~vi~~~~~~~~GT~~~-~~a~~~l~-~~ 135 (293)
T PLN02917 72 KPMIQRTWERAKLATT-LDH--IVVATD--DERIAECC----RG-----FGADVIMTSESCRNGTERC-NEALKKLE-KK 135 (293)
T ss_pred EEHHHHHHHHHHcCCC-CCE--EEEECC--hHHHHHHH----HH-----cCCEEEeCCcccCCchHHH-HHHHHhcc-CC
Confidence 3578888888876542 233 334422 22222222 21 233444332 233444444 46766551 23
Q ss_pred CcEEEEEcCCCC-CChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHH---Hh-hh-cchh-h-H-Hhhhcc-cC
Q 041333 188 CDFVVIFDADFQ-PESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQ---EM-SL-DYHF-T-V-EQEVGS-ST 257 (513)
Q Consensus 188 ~d~I~~lDaD~~-~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~---~~-~~-~~~~-~-~-~~~~~~-~~ 257 (513)
.|+++++++|.- ++++.+++++..+.++++..+...-......+..-..+.. +- .. -++. . + +..... ..
T Consensus 136 ~d~Vlil~gD~PlI~~~tI~~li~~~~~~~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~~~~~ 215 (293)
T PLN02917 136 YDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSGKVNP 215 (293)
T ss_pred CCEEEEecCCcCCCCHHHHHHHHHHHHhcCCceEEEEeeecCHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCccccc
Confidence 689999999975 5999999999988555544333331211111111111110 00 00 0000 0 1 111100 01
Q ss_pred CCccccccceeeeeHHHHHHcCCCCCCCc-cchHHHHHHHhhCCCeEEEec
Q 041333 258 HAFFGFNGTAGVWRIAAVNEAGGWKDRTT-VEDMDLAVRASLKGWKFLYLG 307 (513)
Q Consensus 258 ~~~~~~~G~~~~~rr~~l~~~gg~~~~~~-~ED~~l~~rl~~~G~~i~~~~ 307 (513)
....-.+.+-.+|+++.+..+..++.+.. .|-+-.-+++.++|.++..++
T Consensus 216 ~~i~~~n~Giy~f~~~~L~~l~~l~~~n~e~e~yLtdl~~le~G~~i~~~~ 266 (293)
T PLN02917 216 QFPYLLHLGIQSYDAKFLKIYPELPPTPLQLEEDLEQLKVLENGYKMKVIK 266 (293)
T ss_pred ccceEEEEEEEEeCHHHHHHHHcCCCCcccchhccHHHHHHhCCCceEEEE
Confidence 11122456678999999988776665542 222222235779999986665
No 109
>PLN02458 transferase, transferring glycosyl groups
Probab=91.56 E-value=2.9 Score=40.86 Aligned_cols=103 Identities=16% Similarity=0.106 Sum_probs=60.7
Q ss_pred CcEEEEEeccC-Ch---HHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCC---
Q 041333 97 PMVLVQIPMFN-ER---EVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRK--- 169 (513)
Q Consensus 97 P~VsIiIP~yn-e~---~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~--- 169 (513)
+.|-||-|+|. +. ..+.+.-..+..-.+| . .-|+|-|.+..+.+..+++ +-|...+++..+.+.
T Consensus 112 rlIivVTPTY~rR~~Q~a~LTRLahTL~lVp~p-L-~WIVVEd~~~t~~va~lLr-------rsGl~y~HL~~k~~~~~~ 182 (346)
T PLN02458 112 RLVIIVTPISTKDRYQGVLLRRLANTLRLVPPP-L-LWIVVEGQSDSEEVSEMLR-------KTGIMYRHLVFKENFTDP 182 (346)
T ss_pred ceEEEECCCCCCcchhHHHHHHHHHHHhcCCCC-c-eEEEEeCCCCCHHHHHHHH-------HcCCceEEeccCCCCCCc
Confidence 45888999998 33 4566666666655433 2 3343555433222232332 235555554333221
Q ss_pred -CCChhHHHHHHHhccc-CCCcEEEEEcCCCCCChHHHHHH
Q 041333 170 -GYKAGALREGMKRGYV-KSCDFVVIFDADFQPESDFLTRT 208 (513)
Q Consensus 170 -g~Ka~aln~gl~~a~~-~~~d~I~~lDaD~~~~pd~L~~l 208 (513)
+.....+|.|++.... ...-+|.|.|+|...+-+.++++
T Consensus 183 ~~r~~~QRN~AL~~IR~h~l~GVVyFADDdNtYsl~LFeEm 223 (346)
T PLN02458 183 EAELDHQRNLALRHIEHHKLSGIVHFAGLSNVYDLDFFDEI 223 (346)
T ss_pred cchhHHHHHHHHHHHHhcCcCceEEEccCCCcccHHHHHHH
Confidence 2124569999998843 24467888999999998888774
No 110
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=91.42 E-value=2.6 Score=41.92 Aligned_cols=54 Identities=19% Similarity=0.310 Sum_probs=40.2
Q ss_pred hhHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHh---cCCCeeEEEeeEEEec
Q 041333 173 AGALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLV---HNPQLALVQARWEFVN 229 (513)
Q Consensus 173 a~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~---~~~~v~~V~~~~~~~n 229 (513)
..-+|.|.+.| +.++++++|.|..|.++.-+.+.+... ...+...|........
T Consensus 116 N~LRNvAr~~a---~T~~v~~~DvD~~ps~~l~~~l~~~~~~~~~~~~~a~VvPaFE~~~ 172 (317)
T PF13896_consen 116 NLLRNVARSGA---RTDYVFLLDVDFLPSPGLYEKLLRFARRNIDKSKTAFVVPAFETRE 172 (317)
T ss_pred HHHHHHHHHhc---CcceEEEecceeeeCcchHHHHHHHhhhhccCCceEEEEeeeeccc
Confidence 34589999999 999999999999999887777665442 2345666666655433
No 111
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=91.41 E-value=2.8 Score=41.10 Aligned_cols=120 Identities=16% Similarity=0.141 Sum_probs=67.5
Q ss_pred CCCcEEEEEeccCCh--HHHHHHHHHHHcCCCCCC--eeEEEEEeCCCchh-HHHHHHHHHHHhhcc--CccEEEEEcCC
Q 041333 95 SYPMVLVQIPMFNER--EVYQLSIGAACGLSWPSD--RLIIQVLDDSTDLT-IKDMVELECQRWASK--GINIKYEVRDN 167 (513)
Q Consensus 95 ~~P~VsIiIP~yne~--~~l~~~l~sl~~q~yp~~--~i~IiV~Dds~D~t-~~~l~~~~~~~~~~~--~~~v~~~~~~~ 167 (513)
.-++++|=||+-..+ ..+.+||.|++..--|.+ .+.|+|.=..+|++ .....+....++++. ...+.+++.+.
T Consensus 50 ~~~~L~IGIpTV~R~~~sYL~~TL~SLl~~ls~~Er~~i~IvVllAd~Dp~~~~~~~~~i~~~f~~~i~sG~l~VI~~p~ 129 (297)
T PF04666_consen 50 TGKKLCIGIPTVKREKESYLLDTLASLLDGLSPEERKDIVIVVLLADTDPDYHPSVAQNISTRFADHIESGLLEVISPPP 129 (297)
T ss_pred CCCeEEEEecccccCCCchHHHHHHHHHHhCCHHHhcCeEEEEEecCCChhhhHHHHHHHHHHhHHHHHhCceEEEeccc
Confidence 344699999998765 789999999997655543 34443433333332 233333333333221 11233443321
Q ss_pred C----------C-CC--C------hhHH--HHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcC
Q 041333 168 R----------K-GY--K------AGAL--REGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHN 215 (513)
Q Consensus 168 ~----------~-g~--K------a~al--n~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~ 215 (513)
. + |- + ..++ -..++.| ...++|.+.+.+|.+..|+|+.++.......
T Consensus 130 ~~Yp~l~~l~~~~~d~~~rv~wrsKq~lDya~Lm~y~-~~~~~YyL~LEDDVia~~~f~~~i~~~v~~~ 197 (297)
T PF04666_consen 130 SYYPDLDNLKRNFGDSEERVRWRSKQNLDYAFLMNYC-QNLGDYYLQLEDDVIAAPGFLSRIKRFVEAW 197 (297)
T ss_pred ccCCChhhhhhcccChhhhhhHHHhhcccHHHHHHHH-HhcCCeEEEecCCeEechhHHHHHHHHHHHh
Confidence 1 0 00 0 0011 1223333 2478999999999999999999998887443
No 112
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=90.85 E-value=2.3 Score=39.55 Aligned_cols=103 Identities=16% Similarity=0.168 Sum_probs=59.6
Q ss_pred EEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHH
Q 041333 102 QIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMK 181 (513)
Q Consensus 102 iIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~ 181 (513)
++|. +....++.+++++.+.... ++++| |.++......+.+ +++ .....+.++..+ .+ ...++..|++
T Consensus 22 l~~i-~Gkpll~~~i~~l~~~~~~-~~ivV-v~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~--~~-~~~si~~al~ 89 (218)
T cd02516 22 FLEL-GGKPVLEHTLEAFLAHPAI-DEIVV-VVPPDDIDLAKEL-----AKY-GLSKVVKIVEGG--AT-RQDSVLNGLK 89 (218)
T ss_pred eeEE-CCeEHHHHHHHHHhcCCCC-CEEEE-EeChhHHHHHHHH-----Hhc-ccCCCeEEECCc--hH-HHHHHHHHHH
Confidence 4444 4567889999998875422 34443 4443222111111 111 112234443221 22 4677888888
Q ss_pred hcccCCCcEEEEEcCCCC-CChHHHHHHHHHHhcCC
Q 041333 182 RGYVKSCDFVVIFDADFQ-PESDFLTRTIPFLVHNP 216 (513)
Q Consensus 182 ~a~~~~~d~I~~lDaD~~-~~pd~L~~l~~~~~~~~ 216 (513)
.....+.|.++++++|.- ++++.+++++..+.++.
T Consensus 90 ~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~ 125 (218)
T cd02516 90 ALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYG 125 (218)
T ss_pred hcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCC
Confidence 752125789999999965 59999999999884443
No 113
>PF13733 Glyco_transf_7N: N-terminal region of glycosyl transferase group 7; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=90.59 E-value=0.36 Score=40.89 Aligned_cols=76 Identities=17% Similarity=0.226 Sum_probs=46.6
Q ss_pred CcEEEEEeccCChHHHHHHHHHHH----cCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCC
Q 041333 97 PMVLVQIPMFNEREVYQLSIGAAC----GLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYK 172 (513)
Q Consensus 97 P~VsIiIP~yne~~~l~~~l~sl~----~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~K 172 (513)
-+|.||||-+|.++.+...+..+. +|.. ...|+|+.-+++.. -.|
T Consensus 47 ~kvAiIIPyRdR~~hL~~fl~~l~~~L~rQ~~---~y~I~vieQ~~~~~----------------------------FNR 95 (136)
T PF13733_consen 47 HKVAIIIPYRDREEHLRIFLPHLHPFLQRQQL---DYRIFVIEQVDNGP----------------------------FNR 95 (136)
T ss_dssp -EEEEEEEESS-HHHHHHHHHHHHHHHHHTT----EEEEEEEEE-SSS-------------------------------H
T ss_pred cceEEEEEeCCHHHHHHHHHHHHHHHHhhCcc---eEEEEEEeeccCCC----------------------------Cch
Confidence 389999999999988887776543 3432 23444554433221 125
Q ss_pred hhHHHHHHHhccc-CCCcEEEEEcCCCCCChH
Q 041333 173 AGALREGMKRGYV-KSCDFVVIFDADFQPESD 203 (513)
Q Consensus 173 a~aln~gl~~a~~-~~~d~I~~lDaD~~~~pd 203 (513)
+.-+|.|+..|.. ...|.+++-|-|..|..|
T Consensus 96 g~L~NvGf~eA~~~~~~dc~ifHDVDllP~~~ 127 (136)
T PF13733_consen 96 GKLMNVGFLEALKDDDFDCFIFHDVDLLPEND 127 (136)
T ss_dssp HHHHHHHHHHHHHHS--SEEEEE-TTEEESBT
T ss_pred hhhhhHHHHHHhhccCCCEEEEecccccccCC
Confidence 5677888877754 368999999999988654
No 114
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=89.36 E-value=4.1 Score=37.58 Aligned_cols=97 Identities=21% Similarity=0.327 Sum_probs=59.2
Q ss_pred EEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHH
Q 041333 102 QIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMK 181 (513)
Q Consensus 102 iIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~ 181 (513)
.+|.-| ...+..+++++.+... .++.| |.+...+. ..... .+....+.++.++..+...| -++++..+.+
T Consensus 23 ll~v~g-~pli~~~l~~l~~~g~--~~i~v-v~~~~~~~-i~~~~----~~~~~~~~~i~~~~~~~~~g-~~~al~~~~~ 92 (217)
T cd04181 23 LLPIAG-KPILEYIIERLARAGI--DEIIL-VVGYLGEQ-IEEYF----GDGSKFGVNIEYVVQEEPLG-TAGAVRNAED 92 (217)
T ss_pred ccEECC-eeHHHHHHHHHHHCCC--CEEEE-EeccCHHH-HHHHH----cChhhcCceEEEEeCCCCCc-cHHHHHHhhh
Confidence 344444 4789999999887652 34444 44443222 22111 11111245666666554445 6889999988
Q ss_pred hcccCCCcEEEEEcCCCCCChHHHHHHHHHH
Q 041333 182 RGYVKSCDFVVIFDADFQPESDFLTRTIPFL 212 (513)
Q Consensus 182 ~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~ 212 (513)
.. ..|.++++++|...+.+..+ ++...
T Consensus 93 ~~---~~~~~lv~~~D~~~~~~~~~-~~~~~ 119 (217)
T cd04181 93 FL---GDDDFLVVNGDVLTDLDLSE-LLRFH 119 (217)
T ss_pred hc---CCCCEEEEECCeecCcCHHH-HHHHH
Confidence 87 78899999999988777544 44444
No 115
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=89.31 E-value=2.6 Score=37.82 Aligned_cols=85 Identities=9% Similarity=0.185 Sum_probs=55.6
Q ss_pred CChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHHhcccC
Q 041333 107 NEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMKRGYVK 186 (513)
Q Consensus 107 ne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~~a~~~ 186 (513)
+....++.+++.+.+. .++++| |..+..+. .. ..++.++..+....|...++..|++..
T Consensus 24 ~g~~ll~~~i~~l~~~---~~~iiv-v~~~~~~~----~~----------~~~~~~v~~~~~~~G~~~si~~~l~~~--- 82 (181)
T cd02503 24 GGKPLLEHVLERLKPL---VDEVVI-SANRDQER----YA----------LLGVPVIPDEPPGKGPLAGILAALRAA--- 82 (181)
T ss_pred CCEEHHHHHHHHHHhh---cCEEEE-ECCCChHH----Hh----------hcCCcEeeCCCCCCCCHHHHHHHHHhc---
Confidence 4456788888877754 234433 33322111 11 123445544433333678999999988
Q ss_pred CCcEEEEEcCCCC-CChHHHHHHHHHH
Q 041333 187 SCDFVVIFDADFQ-PESDFLTRTIPFL 212 (513)
Q Consensus 187 ~~d~I~~lDaD~~-~~pd~L~~l~~~~ 212 (513)
+.|.++++++|.- ++++.+++++..+
T Consensus 83 ~~~~vlv~~~D~P~i~~~~i~~l~~~~ 109 (181)
T cd02503 83 PADWVLVLACDMPFLPPELLERLLAAA 109 (181)
T ss_pred CCCeEEEEeCCcCCCCHHHHHHHHHhh
Confidence 7899999999974 6999999998877
No 116
>PLN03180 reversibly glycosylated polypeptide; Provisional
Probab=89.29 E-value=1.3 Score=43.48 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=27.1
Q ss_pred HHHHHHHhcccCCCcEEEEEcCCCCCChH-------HHHHHHH
Q 041333 175 ALREGMKRGYVKSCDFVVIFDADFQPESD-------FLTRTIP 210 (513)
Q Consensus 175 aln~gl~~a~~~~~d~I~~lDaD~~~~pd-------~L~~l~~ 210 (513)
.+|.|+-.+ +.+|++.+|+|+.|..| ++++-+.
T Consensus 84 ~R~fGyL~s---~~~yivsiDDD~~Pa~d~~g~~i~~~~qH~~ 123 (346)
T PLN03180 84 CRCFGYLVS---KKKYIFTIDDDCFVAKDPSGKLINALEQHIK 123 (346)
T ss_pred chhhhheee---cceEEEEECCCCCCCCCCccccccHHHHHHH
Confidence 578899888 89999999999999766 6665444
No 117
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=89.27 E-value=7 Score=35.40 Aligned_cols=100 Identities=18% Similarity=0.215 Sum_probs=58.6
Q ss_pred CChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCC-CCCChhHHHHHHHhccc
Q 041333 107 NEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNR-KGYKAGALREGMKRGYV 185 (513)
Q Consensus 107 ne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~-~g~Ka~aln~gl~~a~~ 185 (513)
+....++.+++.+++.. -++++| |... .++..+...+.. ....++.++..++. .| ...++..|++++..
T Consensus 24 ~g~~ll~~~i~~~~~~~--~~~i~v-v~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~G-~~~si~~gl~~~~~ 93 (190)
T TIGR03202 24 GETTLGSASLKTALSSR--LSKVIV-VIGE-KYAHLSWLDPYL-----LADERIMLVCCRDACEG-QAHSLKCGLRKAEA 93 (190)
T ss_pred CCccHHHHHHHHHHhCC--CCcEEE-EeCC-ccchhhhhhHhh-----hcCCCeEEEECCChhhh-HHHHHHHHHHHhcc
Confidence 55678888887766532 234444 4433 232222121110 11234555443332 34 56788888887632
Q ss_pred CCCcEEEEEcCCC-CCChHHHHHHHHHHhcCC
Q 041333 186 KSCDFVVIFDADF-QPESDFLTRTIPFLVHNP 216 (513)
Q Consensus 186 ~~~d~I~~lDaD~-~~~pd~L~~l~~~~~~~~ 216 (513)
.+.|+++++++|. .++++.+++++..+..++
T Consensus 94 ~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~ 125 (190)
T TIGR03202 94 MGADAVVILLADQPFLTADVINALLALAKRRP 125 (190)
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCC
Confidence 3579999999996 459999999998874434
No 118
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=89.15 E-value=19 Score=33.52 Aligned_cols=179 Identities=15% Similarity=0.134 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHHhcccCCCc
Q 041333 110 EVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMKRGYVKSCD 189 (513)
Q Consensus 110 ~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~~a~~~~~d 189 (513)
..+.++.+...+.. -++++ |.-| |+.....++ + .|..+..-+.+.++| ..=+..+++.....+.|
T Consensus 29 pmI~rV~e~a~~s~--~~rvv--VATD--de~I~~av~----~---~G~~avmT~~~h~SG--TdR~~Ev~~~l~~~~~~ 93 (247)
T COG1212 29 PMIVRVAERALKSG--ADRVV--VATD--DERIAEAVQ----A---FGGEAVMTSKDHQSG--TDRLAEVVEKLGLPDDE 93 (247)
T ss_pred hHHHHHHHHHHHcC--CCeEE--EEcC--CHHHHHHHH----H---hCCEEEecCCCCCCc--cHHHHHHHHhcCCCcce
Confidence 45666666666442 23433 4443 333333332 2 245554444444555 34456666665445778
Q ss_pred EEEEEcCCC-CCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCC----chHHHHHHh-hhcchhhHHh-h-hcccCCCcc
Q 041333 190 FVVIFDADF-QPESDFLTRTIPFLVHNPQLALVQARWEFVNADE----CLMTRLQEM-SLDYHFTVEQ-E-VGSSTHAFF 261 (513)
Q Consensus 190 ~I~~lDaD~-~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~----~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~ 261 (513)
+|+-+-.|- .++|.-+.+++..++ +.+.++++.-....+..+ +...-..+. .+...|.... + .+.. .+..
T Consensus 94 iIVNvQGDeP~i~p~~I~~~~~~L~-~~~~~~aTl~~~i~~~ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~-~~~~ 171 (247)
T COG1212 94 IIVNVQGDEPFIEPEVIRAVAENLE-NSNADMATLAVKITDEEEAFNPNVVKVVLDKEGYALYFSRAPIPYGRDN-FGGT 171 (247)
T ss_pred EEEEccCCCCCCCHHHHHHHHHHHH-hCCcceeeeeeecCCHHHhcCCCcEEEEEcCCCcEEEEEcCCCCCcccc-cCCc
Confidence 999999995 559999999999994 447777776655433211 100000000 0111111100 0 0011 1101
Q ss_pred ccccc--eeeeeHHHHHHcCCCCCCCccchHHH--HHHHhhCCCeEEEe
Q 041333 262 GFNGT--AGVWRIAAVNEAGGWKDRTTVEDMDL--AVRASLKGWKFLYL 306 (513)
Q Consensus 262 ~~~G~--~~~~rr~~l~~~gg~~~~~~~ED~~l--~~rl~~~G~~i~~~ 306 (513)
.+-.+ -..||++++++..-|.... -|+.+- -+|+..+|.|+...
T Consensus 172 p~l~HIGIYayr~~~L~~f~~~~ps~-LE~~E~LEQLR~Le~G~kI~v~ 219 (247)
T COG1212 172 PFLRHIGIYAYRAGFLERFVALKPSP-LEKIESLEQLRVLENGEKIHVE 219 (247)
T ss_pred chhheeehHHhHHHHHHHHHhcCCch-hHHHHHHHHHHHHHcCCeeEEE
Confidence 11122 3468999999988887654 344443 35677899999655
No 119
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=88.88 E-value=3.6 Score=36.00 Aligned_cols=96 Identities=16% Similarity=0.218 Sum_probs=61.8
Q ss_pred EeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHHh
Q 041333 103 IPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMKR 182 (513)
Q Consensus 103 IP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~~ 182 (513)
+|. ++...++.+++.+.+... ++++| |..+ ++..+ .. .+.++.++..+....+-..++-.|++.
T Consensus 19 ~~i-~g~~li~~~l~~l~~~~~--~~Ivv-v~~~--~~~~~-~~---------~~~~~~~v~~~~~~~G~~~sl~~a~~~ 82 (160)
T PF12804_consen 19 LPI-GGKPLIERVLEALREAGV--DDIVV-VTGE--EEIYE-YL---------ERYGIKVVVDPEPGQGPLASLLAALSQ 82 (160)
T ss_dssp SEE-TTEEHHHHHHHHHHHHTE--SEEEE-EEST--HHHHH-HH---------TTTTSEEEE-STSSCSHHHHHHHHHHT
T ss_pred eeE-CCccHHHHHHHHhhccCC--ceEEE-ecCh--HHHHH-HH---------hccCceEEEeccccCChHHHHHHHHHh
Confidence 444 666788888888877642 34433 4333 22111 11 123566776654434467888888887
Q ss_pred cccCCCcEEEEEcCCC-CCChHHHHHHHHHHhcCC
Q 041333 183 GYVKSCDFVVIFDADF-QPESDFLTRTIPFLVHNP 216 (513)
Q Consensus 183 a~~~~~d~I~~lDaD~-~~~pd~L~~l~~~~~~~~ 216 (513)
.. +.+.++++.+|. .++++.+++++..+++++
T Consensus 83 ~~--~~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~ 115 (160)
T PF12804_consen 83 LP--SSEPVLVLPCDQPFLSPELLRRLLEALEKSP 115 (160)
T ss_dssp ST--TSSEEEEEETTETTS-HHHHHHHHHHHHHTT
T ss_pred cc--cCCCcEEEeCCccccCHHHHHHHHHHHhccC
Confidence 53 789999999998 469999999999985444
No 120
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=88.22 E-value=1.5 Score=40.91 Aligned_cols=90 Identities=14% Similarity=0.131 Sum_probs=58.8
Q ss_pred ChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCC-CCChhHHHHHHHhcccC
Q 041333 108 EREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRK-GYKAGALREGMKRGYVK 186 (513)
Q Consensus 108 e~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~-g~Ka~aln~gl~~a~~~ 186 (513)
..+.+.++++++.+..- .+++| |+.+-..+ +.++...++ +.+.+++.++... +.-...+-.|.+.+
T Consensus 30 gr~ii~~~i~~L~~~gi--~e~vv-V~~g~~~~----lve~~l~~~---~~~~~iv~N~~y~ktN~~~Sl~~akd~~--- 96 (239)
T COG1213 30 GREIIYRTIENLAKAGI--TEFVV-VTNGYRAD----LVEEFLKKY---PFNAKIVINSDYEKTNTGYSLLLAKDYM--- 96 (239)
T ss_pred CeEeHHHHHHHHHHcCC--ceEEE-EeccchHH----HHHHHHhcC---CcceEEEeCCCcccCCceeEEeeehhhh---
Confidence 44688999999998753 34433 65553322 334333333 4467777665432 11234677788888
Q ss_pred CCcEEEEEcCCCCCChHHHHHHHHH
Q 041333 187 SCDFVVIFDADFQPESDFLTRTIPF 211 (513)
Q Consensus 187 ~~d~I~~lDaD~~~~pd~L~~l~~~ 211 (513)
+++ ++++|+|++.+|+++++++..
T Consensus 97 ~~~-fii~~sD~vye~~~~e~l~~a 120 (239)
T COG1213 97 DGR-FILVMSDHVYEPSILERLLEA 120 (239)
T ss_pred cCc-EEEEeCCEeecHHHHHHHHhC
Confidence 677 778999999999999998875
No 121
>PF02364 Glucan_synthase: 1,3-beta-glucan synthase component ; InterPro: IPR003440 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase 48 family GT48 from CAZY, which consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase (2.4.1.34 from EC) also known as callose synthase catalyses the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall []. The reaction catalysed is:- UDP-glucose + {1,3-beta-D-glucosyl}(N) = UDP + {1,3-beta-D-glucosyl}(N+1).; GO: 0003843 1,3-beta-D-glucan synthase activity, 0006075 1,3-beta-D-glucan biosynthetic process, 0000148 1,3-beta-D-glucan synthase complex, 0016020 membrane
Probab=88.17 E-value=1.9 Score=47.47 Aligned_cols=182 Identities=10% Similarity=0.104 Sum_probs=97.9
Q ss_pred CChhHHHHHHHhcccCCCcEEEEEcCCC-CCChHH--HHHHHHHHhc-----------------CCCeeEEEeeEEEecC
Q 041333 171 YKAGALREGMKRGYVKSCDFVVIFDADF-QPESDF--LTRTIPFLVH-----------------NPQLALVQARWEFVNA 230 (513)
Q Consensus 171 ~Ka~aln~gl~~a~~~~~d~I~~lDaD~-~~~pd~--L~~l~~~~~~-----------------~~~v~~V~~~~~~~n~ 230 (513)
||..|-|+++-.. +||++-.+|+.- -.-.++ ++.+++.|++ .+.+.+++.+-.....
T Consensus 275 GK~eNQNhaiiF~---rGe~lQ~IDmNQDnYleE~lK~rnlL~Ef~~~~~~~~~~~~~~~~~~~~~~~aIlG~RE~IFs~ 351 (817)
T PF02364_consen 275 GKPENQNHAIIFT---RGEYLQTIDMNQDNYLEEALKMRNLLEEFEEMHGDSSSPYIPGIEEEGKRPVAILGFREHIFSE 351 (817)
T ss_pred CCccccceeEEEE---ccccccccccchhhhHHHHHHHHHHHHHHHhcCCCCCCCCCCCccccCCCCceEecccceEecC
Confidence 6999999999999 999999999962 222222 2345566643 2456777777665554
Q ss_pred CCchHHHHHHhhhcchhhHHhhhcccCCCccccccceeeeeHHHHHHcCCCCCC----CccchHHHHHHHhhCCCeEEEe
Q 041333 231 DECLMTRLQEMSLDYHFTVEQEVGSSTHAFFGFNGTAGVWRIAAVNEAGGWKDR----TTVEDMDLAVRASLKGWKFLYL 306 (513)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~gg~~~~----~~~ED~~l~~rl~~~G~~i~~~ 306 (513)
+.+-+....+..-..+-...|+.-.....-. -=|+-=++.|-....-||.... ++.||..-++....+|.++.++
T Consensus 352 ~vg~L~~~aa~qE~~F~Tl~qR~la~p~~rl-HYGHPD~~n~~f~~TRGGvSKAsk~lhLsEDIfaG~n~~lRGG~i~h~ 430 (817)
T PF02364_consen 352 NVGSLGDFAAGQEQSFGTLFQRTLANPLVRL-HYGHPDVFNRIFMTTRGGVSKASKGLHLSEDIFAGMNATLRGGRIKHC 430 (817)
T ss_pred CcchHHHHhhhhhHHHHHHHHHHHhcchhhc-cCCCchhhhhhheeccCccchHhhcccccHHHHHHHHHHhcCCceeeh
Confidence 4443333221110000011111111111000 1144445555555555776542 4999999999999999999998
Q ss_pred cccccccccCcCHHHHHHHHHhhhhchh-HHHHhhcccccc-ccccCcchhhHHH
Q 041333 307 GTVKVKNELPSTFKAYRYQQHRWSCGPA-NLFRKMVMEIVR-NKKVSLWKKVHVI 359 (513)
Q Consensus 307 ~~~~~~~~~p~~~~~~~~Qr~RW~~G~~-~~~~~~~~~~~~-~~~~~~~~~~~~~ 359 (513)
.-..|=-.--..+.+...=..+=+.|+- |.+. ++..+ ..++++.+-+.+.
T Consensus 431 ey~qcGKGRD~Gf~~I~~F~~KI~~G~GEQ~LS---Re~yrLg~~ld~~R~LSfy 482 (817)
T PF02364_consen 431 EYIQCGKGRDVGFNSILNFETKIASGMGEQMLS---REYYRLGTRLDFFRFLSFY 482 (817)
T ss_pred hhhhcccccccCchhhhhhHhHhcCCccchhhh---HHHHHhhccCCHHHHHHHH
Confidence 8766621112233333333444556654 3332 12222 2345555555443
No 122
>PLN03153 hypothetical protein; Provisional
Probab=88.11 E-value=1.5 Score=45.62 Aligned_cols=99 Identities=15% Similarity=0.059 Sum_probs=61.3
Q ss_pred CCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHhhhcccCCCcccccc
Q 041333 186 KSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQEVGSSTHAFFGFNG 265 (513)
Q Consensus 186 ~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G 265 (513)
++.+|++++|+|+.+..+-|.+.+..+ +..+--.++......+.+ ..+ +..+.+.|
T Consensus 209 pd~kWfVf~DDDTyf~~~NLv~~Ls~Y-Dptkp~YIGs~Se~~~qn-------------~~f----------~~~fA~GG 264 (537)
T PLN03153 209 PDVRWFVLGDDDTIFNADNLVAVLSKY-DPSEMVYVGGPSESHSAN-------------SYF----------SHNMAFGG 264 (537)
T ss_pred CCCCEEEEecCCccccHHHHHHHHhhc-CCCCCEEecccccccccc-------------ccc----------ccccccCC
Confidence 588999999999999888777777776 222333333332221110 000 01123569
Q ss_pred ceeeeeHHHHHHcCCCCC-------CCccchHHHHHHHhhCCCeEEEecc
Q 041333 266 TAGVWRIAAVNEAGGWKD-------RTTVEDMDLAVRASLKGWKFLYLGT 308 (513)
Q Consensus 266 ~~~~~rr~~l~~~gg~~~-------~~~~ED~~l~~rl~~~G~~i~~~~~ 308 (513)
++.++++.+++.+....+ ...++|..++.-+.+.|.+....+.
T Consensus 265 AG~~LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~g 314 (537)
T PLN03153 265 GGIAISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPG 314 (537)
T ss_pred ceEEEcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCC
Confidence 999999966655332211 2357899999999999877765553
No 123
>PF11735 CAP59_mtransfer: Cryptococcal mannosyltransferase 1 ; InterPro: IPR021047 The capsule of pathogenic fungi is a complex polysaccharide whose formation is determined by a number of enzymes including, most importantly, alpha-1,3-mannosyltransferase 1 [, ]. It is responsible for addition of mannose residues in an alpha-1,3 linkage to a polymannosly precursor.
Probab=88.04 E-value=13 Score=35.32 Aligned_cols=119 Identities=13% Similarity=0.125 Sum_probs=68.6
Q ss_pred EEEeccCChHHHHHHHH-HHHc---CCCCCCeeEEE-EEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCC-----
Q 041333 101 VQIPMFNEREVYQLSIG-AACG---LSWPSDRLIIQ-VLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKG----- 170 (513)
Q Consensus 101 IiIP~yne~~~l~~~l~-sl~~---q~yp~~~i~Ii-V~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g----- 170 (513)
|-.-.||.++.+..... ++++ .=-| +.+-|- +-.||+|.|.+. ++.+...+...+.+-.+...+....
T Consensus 4 IA~~l~~~~~iL~~~~~~~ll~li~~LGp-~nv~vSIyE~~S~D~T~~~-L~~L~~~L~~lgv~~~i~~~~~~~~~~~~~ 81 (241)
T PF11735_consen 4 IAANLYNNEDILPSLWGDALLELIRFLGP-ENVFVSIYESGSWDGTKEA-LRALDAELDALGVPHSIVLSDITHRDEIER 81 (241)
T ss_pred EEEEcccCHhHHHHHHHHHHHHHHHHhCc-CeEEEEEEeCCCCccHHHH-HHHHHHHHHhCCCCeEEEeCCCcccccccc
Confidence 44456777777765555 5543 2223 444443 445688988874 4566556656666655554322111
Q ss_pred --------CChhHHHHHHHhccc------CCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEe
Q 041333 171 --------YKAGALREGMKRGYV------KSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQA 223 (513)
Q Consensus 171 --------~Ka~aln~gl~~a~~------~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~ 223 (513)
+-|.-+|.+++--.. .+.|-|++++ |....+.-+.+++..- ...+.+++++
T Consensus 82 ~~~~~RI~~LA~lRN~ALePL~~~~~~~~~~fd~VlfLN-DV~f~~~Dil~LL~~~-~~~~~~~aCa 146 (241)
T PF11735_consen 82 PPRLRRIEYLAELRNRALEPLYDLARKRGRRFDKVLFLN-DVFFCPEDILELLFTR-NRGNYDMACA 146 (241)
T ss_pred cchhhhHHHHHHHHhHHHHHHHhhhhccCCCcCEEEEec-CcccCHHHHHHHHhhc-Ccccccchhh
Confidence 224667888875531 3567799999 8777766666665543 2244555555
No 124
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=86.73 E-value=8.8 Score=35.47 Aligned_cols=97 Identities=15% Similarity=0.231 Sum_probs=56.5
Q ss_pred EEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHH
Q 041333 102 QIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMK 181 (513)
Q Consensus 102 iIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~ 181 (513)
++|.-|. ..+...++.+.+... .++.| +.+.. ++..+...+ +....+.++.+.......| .++++..+++
T Consensus 23 ll~i~g~-pli~~~l~~l~~~g~--~~v~v-v~~~~-~~~i~~~~~----~~~~~~~~~~~~~~~~~~G-~~~~l~~a~~ 92 (223)
T cd06915 23 LAPVAGR-PFLEYLLEYLARQGI--SRIVL-SVGYL-AEQIEEYFG----DGYRGGIRIYYVIEPEPLG-TGGAIKNALP 92 (223)
T ss_pred ccEECCc-chHHHHHHHHHHCCC--CEEEE-EcccC-HHHHHHHHc----CccccCceEEEEECCCCCc-chHHHHHHHh
Confidence 3444444 688889988887542 34444 44432 222221211 1000133444544444444 6788888888
Q ss_pred hcccCCCcEEEEEcCCCCCChHHHHHHHHHH
Q 041333 182 RGYVKSCDFVVIFDADFQPESDFLTRTIPFL 212 (513)
Q Consensus 182 ~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~ 212 (513)
.. ..|.++++++|...+++ +.+++..+
T Consensus 93 ~~---~~~~~lv~~~D~~~~~~-~~~~l~~~ 119 (223)
T cd06915 93 KL---PEDQFLVLNGDTYFDVD-LLALLAAL 119 (223)
T ss_pred hc---CCCCEEEEECCcccCCC-HHHHHHHH
Confidence 87 67889999999977665 55666666
No 125
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=86.19 E-value=6.9 Score=35.56 Aligned_cols=86 Identities=14% Similarity=0.160 Sum_probs=53.4
Q ss_pred CChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCC-CCCChhHHHHHHHhccc
Q 041333 107 NEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNR-KGYKAGALREGMKRGYV 185 (513)
Q Consensus 107 ne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~-~g~Ka~aln~gl~~a~~ 185 (513)
+....++.+++.+.. . -++++| |.++. .+... ..+ +.++..+.. ..+-..++..|++..
T Consensus 28 ~g~~ll~~~i~~l~~-~--~~~i~v-v~~~~----~~~~~--------~~~--~~~v~~~~~~~~g~~~~i~~~l~~~-- 87 (193)
T PRK00317 28 NGKPLIQHVIERLAP-Q--VDEIVI-NANRN----LARYA--------AFG--LPVIPDSLADFPGPLAGILAGLKQA-- 87 (193)
T ss_pred CCEEHHHHHHHHHhh-h--CCEEEE-ECCCC----hHHHH--------hcC--CcEEeCCCCCCCCCHHHHHHHHHhc--
Confidence 556788889988762 1 133333 43321 11111 112 333433322 123567888889877
Q ss_pred CCCcEEEEEcCCC-CCChHHHHHHHHHHh
Q 041333 186 KSCDFVVIFDADF-QPESDFLTRTIPFLV 213 (513)
Q Consensus 186 ~~~d~I~~lDaD~-~~~pd~L~~l~~~~~ 213 (513)
+.|+++++++|. .++++.+++++..+.
T Consensus 88 -~~~~vlv~~~D~P~i~~~~i~~l~~~~~ 115 (193)
T PRK00317 88 -RTEWVLVVPCDTPFIPPDLVARLAQAAG 115 (193)
T ss_pred -CCCeEEEEcCCcCCCCHHHHHHHHHhhh
Confidence 889999999997 669999999998773
No 126
>KOG4179 consensus Lysyl hydrolase/glycosyltransferase family 25 [Posttranslational modification, protein turnover, chaperones]
Probab=85.92 E-value=1.4 Score=44.01 Aligned_cols=109 Identities=22% Similarity=0.167 Sum_probs=66.2
Q ss_pred CcEEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEE-eCCCchhHHHHHHHHHHHhhccCccEEEEEcCC------CC
Q 041333 97 PMVLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVL-DDSTDLTIKDMVELECQRWASKGINIKYEVRDN------RK 169 (513)
Q Consensus 97 P~VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~-Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~------~~ 169 (513)
|.|-+.+-.+|-...+.--+..+.++|||+.+.-|++- |-+.|.+.+...+ ..+........|.+..... ..
T Consensus 3 ptvl~alL~rn~ah~lp~Flg~le~~Dypk~r~aiw~~~dh~~d~~ie~fre-WL~nv~~~y~~V~~e~~~e~~s~~d~~ 81 (568)
T KOG4179|consen 3 PTVLCALLFRNFAHSLPLFLGELEEGDYPKIRPAIWIGVDHEHDHAIEYFRE-WLENVGDLYHRVKWEPFIEPKSYPDEH 81 (568)
T ss_pred ceeehHHHHHHHHhhhhhccCChhccCCcccccceEEecCccccchHHHHHH-HHHhcCCccceeEEEecCCccccCccc
Confidence 45556666677777777666666789999988766554 5588888885543 3333222223444443221 12
Q ss_pred CC--------------ChhHHHHHHHhcccCCCcEEEEEcCCCCC-ChHHHHHHHH
Q 041333 170 GY--------------KAGALREGMKRGYVKSCDFVVIFDADFQP-ESDFLTRTIP 210 (513)
Q Consensus 170 g~--------------Ka~aln~gl~~a~~~~~d~I~~lDaD~~~-~pd~L~~l~~ 210 (513)
|. |-.|+|.|=+ .-.||+++.|.|+.+ .+|.|.-++.
T Consensus 82 ~pk~W~~sr~q~lm~lKeea~~~~r~----~~adyilf~d~d~lLts~dTl~llm~ 133 (568)
T KOG4179|consen 82 GPKHWPDSRFQHLMSLKEEALNWARS----GWADYILFKDEDNLLTSGDTLPLLMN 133 (568)
T ss_pred CCccCchHHHHHHHHHHHHHHHHHHh----hhcceeEEeehhheeeCCchHhHHHh
Confidence 21 2233444332 258999999999888 6777776654
No 127
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=85.16 E-value=9 Score=35.58 Aligned_cols=101 Identities=9% Similarity=0.150 Sum_probs=60.6
Q ss_pred CCCcEEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcC-CCCCCCh
Q 041333 95 SYPMVLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRD-NRKGYKA 173 (513)
Q Consensus 95 ~~P~VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~-~~~g~Ka 173 (513)
..|+- .+|.-+. ..+...++++.+.... ++.| |.... .+....... + ...+.++.+...+ +..| -+
T Consensus 19 ~~pK~--llpi~g~-~li~~~l~~l~~~gi~--~i~i-v~~~~-~~~i~~~~~----~-~~~~~~i~~~~~~~~~~g-~~ 85 (221)
T cd06422 19 TRPKP--LVPVAGK-PLIDHALDRLAAAGIR--RIVV-NTHHL-ADQIEAHLG----D-SRFGLRITISDEPDELLE-TG 85 (221)
T ss_pred CCCCc--eeeECCE-EHHHHHHHHHHHCCCC--EEEE-EccCC-HHHHHHHHh----c-ccCCceEEEecCCCcccc-cH
Confidence 34543 5565555 7899999999887533 3333 43332 222222221 1 1124556555443 2344 67
Q ss_pred hHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHH
Q 041333 174 GALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPF 211 (513)
Q Consensus 174 ~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~ 211 (513)
+++..+++.. +.|.++++++|...+.|+...+..+
T Consensus 86 ~~l~~~~~~~---~~~~~lv~~~D~i~~~~~~~~~~~~ 120 (221)
T cd06422 86 GGIKKALPLL---GDEPFLVVNGDILWDGDLAPLLLLH 120 (221)
T ss_pred HHHHHHHHhc---CCCCEEEEeCCeeeCCCHHHHHHHH
Confidence 8899999887 5588999999999888866554443
No 128
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=84.89 E-value=18 Score=33.40 Aligned_cols=96 Identities=16% Similarity=0.239 Sum_probs=53.2
Q ss_pred CChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCC-CC--CChhHHHHHHHhc
Q 041333 107 NEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNR-KG--YKAGALREGMKRG 183 (513)
Q Consensus 107 ne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~-~g--~Ka~aln~gl~~a 183 (513)
+....+..+++.+.+.... +++ | |..+ ++...... ++ .+..+.+.+.++- .| +...++..+++..
T Consensus 24 ~Gkpll~~~l~~l~~~~~~-~~I-v-V~~~--~~~i~~~~----~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l 91 (223)
T cd02513 24 GGKPLIAWTIEAALESKLF-DRV-V-VSTD--DEEIAEVA----RK---YGAEVPFLRPAELATDTASSIDVILHALDQL 91 (223)
T ss_pred CCccHHHHHHHHHHhCCCC-CEE-E-EECC--cHHHHHHH----HH---hCCCceeeCChHHCCCCCCcHHHHHHHHHHH
Confidence 4556788899888865422 233 2 3322 22222222 22 1222223322211 11 2456777777655
Q ss_pred cc--CCCcEEEEEcCCCC-CChHHHHHHHHHHhc
Q 041333 184 YV--KSCDFVVIFDADFQ-PESDFLTRTIPFLVH 214 (513)
Q Consensus 184 ~~--~~~d~I~~lDaD~~-~~pd~L~~l~~~~~~ 214 (513)
.. ...|.++++++|.- ++++.+++++..+..
T Consensus 92 ~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~ 125 (223)
T cd02513 92 EELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLS 125 (223)
T ss_pred HHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHh
Confidence 11 12489999999975 589999999998844
No 129
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=84.39 E-value=36 Score=37.04 Aligned_cols=190 Identities=11% Similarity=-0.019 Sum_probs=95.0
Q ss_pred CCcEEEEEeccCCh----HHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCC---C
Q 041333 96 YPMVLVQIPMFNER----EVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDN---R 168 (513)
Q Consensus 96 ~P~VsIiIP~yne~----~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~---~ 168 (513)
.+.+-|+|.+--.. +.|++|--.-.... ...-..++++--+.+++.+..++++.+.| -++....-.+ +
T Consensus 384 ~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~~~-~~~v~~rFvVG~s~n~~l~~~L~~Ea~~y----gDIIq~dF~DsY~N 458 (636)
T PLN03133 384 PLDLFIGVFSTANNFKRRMAVRRTWMQYDAVR-SGAVAVRFFVGLHKNQMVNEELWNEARTY----GDIQLMPFVDYYSL 458 (636)
T ss_pred ceEEEEEEeCCcccHHHHHHHHHhhccccccC-CCceEEEEEEecCCcHHHHHHHHHHHHHc----CCeEEEeeechhhh
Confidence 34565666554222 56666554321111 11112334444455565555555544444 2333332222 2
Q ss_pred CCCChh-HHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEE-----ecCCCchHHHHHHhh
Q 041333 169 KGYKAG-ALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEF-----VNADECLMTRLQEMS 242 (513)
Q Consensus 169 ~g~Ka~-aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~-----~n~~~~~~~~~~~~~ 242 (513)
...|.- .+..+.... +.+|++-.|+|+.+..+-|.+.+... ++.-++..|.... +++...|.-....
T Consensus 459 LTlKtl~~~~wa~~c~---~akFilK~DDDvFVnv~~Ll~~L~~~--~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~e-- 531 (636)
T PLN03133 459 ITWKTLAICIFGTEVV---SAKYVMKTDDDAFVRVDEVLASLKRT--NVSHGLLYGLINSDSQPHRNPDSKWYISPEE-- 531 (636)
T ss_pred hHHHHHHHHHHHHhCC---CceEEEEcCCceEEcHHHHHHHHHhc--CCCCceEEEEeccCCCcccCCCCCCCCCHHH--
Confidence 222332 233444444 88999999999999877666655432 2222344444321 1111111110000
Q ss_pred hcchhhHHhhhcccCCCccccccceeeeeHHHHHHcCC-----CCCCCccchHHHHHHHh---hCCCeEEEecc
Q 041333 243 LDYHFTVEQEVGSSTHAFFGFNGTAGVWRIAAVNEAGG-----WKDRTTVEDMDLAVRAS---LKGWKFLYLGT 308 (513)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~gg-----~~~~~~~ED~~l~~rl~---~~G~~i~~~~~ 308 (513)
. ....-+..++|.+.++++++.+.+-- .-...-.||..++.-+. +.|.++.+..+
T Consensus 532 ---------y--p~~~YPpYasG~gYVlS~Dla~~L~~~s~s~~l~~f~lEDVyvGi~l~~l~k~gl~v~~~~~ 594 (636)
T PLN03133 532 ---------W--PEETYPPWAHGPGYVVSRDIAKEVYKRHKEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYEND 594 (636)
T ss_pred ---------C--CCCCCCCCCCcCEEEEcHHHHHHHHHhhhhcccCcCChhhHhHHHHHHHhcccCCCceeeCC
Confidence 0 11122233679999999999987621 11223579999999865 35766666654
No 130
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=83.14 E-value=17 Score=38.05 Aligned_cols=103 Identities=17% Similarity=0.152 Sum_probs=60.0
Q ss_pred EEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHH
Q 041333 102 QIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMK 181 (513)
Q Consensus 102 iIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~ 181 (513)
++|.-| ...++.+++.+.+... ++++| |... .++..++.. ++ .+.++.+...+.+.| -++++..+++
T Consensus 27 ll~v~g-kpli~~~l~~l~~~gi--~~ivv-v~~~-~~~~i~~~~----~~---~~~~~~~~~~~~~~G-~~~sl~~a~~ 93 (446)
T PRK14353 27 LHPVAG-RPMLAHVLAAAASLGP--SRVAV-VVGP-GAEAVAAAA----AK---IAPDAEIFVQKERLG-TAHAVLAARE 93 (446)
T ss_pred cCEECC-chHHHHHHHHHHhCCC--CcEEE-EECC-CHHHHHHHh----hc---cCCCceEEEcCCCCC-cHHHHHHHHH
Confidence 445545 4789999999887642 34444 3332 222222221 11 123344444444444 5777777776
Q ss_pred hcccCCCcEEEEEcCCC-CCChHHHHHHHHHHhcCCCe
Q 041333 182 RGYVKSCDFVVIFDADF-QPESDFLTRTIPFLVHNPQL 218 (513)
Q Consensus 182 ~a~~~~~d~I~~lDaD~-~~~pd~L~~l~~~~~~~~~v 218 (513)
... ...|.++++++|. .++++.+++++.+.+.+.+.
T Consensus 94 ~l~-~~~~~~lv~~~D~P~i~~~~l~~l~~~~~~~~~~ 130 (446)
T PRK14353 94 ALA-GGYGDVLVLYGDTPLITAETLARLRERLADGADV 130 (446)
T ss_pred HHh-ccCCCEEEEeCCcccCCHHHHHHHHHhHhcCCcE
Confidence 641 1257788899998 67999999999866433333
No 131
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=82.95 E-value=27 Score=33.55 Aligned_cols=195 Identities=13% Similarity=0.141 Sum_probs=108.1
Q ss_pred EEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHH
Q 041333 102 QIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMK 181 (513)
Q Consensus 102 iIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~ 181 (513)
++|+|+.+ .+.-+++.+....- .++.| |++..+-+..+.+... =.+-+.++.|...+++.| -++|.-.|-+
T Consensus 25 LlpV~~KP-mi~y~l~~L~~aGI--~dI~I-I~~~~~~~~~~~llGd----gs~~gv~itY~~Q~~p~G-lA~Av~~a~~ 95 (286)
T COG1209 25 LLPVYDKP-MIYYPLETLMLAGI--RDILI-VVGPEDKPTFKELLGD----GSDFGVDITYAVQPEPDG-LAHAVLIAED 95 (286)
T ss_pred cceecCcc-hhHhHHHHHHHcCC--ceEEE-EecCCchhhhhhhhcC----ccccCcceEEEecCCCCc-HHHHHHHHHh
Confidence 57888876 56667777766542 23444 4444344444434321 112378999999999888 7999998888
Q ss_pred hcccCC-CcEEEEEcCCCCCChHHHHHHHHHHhc-CCCeeEEEeeEEEecCCCchHHHHHHhhhcch----hhHHhhhcc
Q 041333 182 RGYVKS-CDFVVIFDADFQPESDFLTRTIPFLVH-NPQLALVQARWEFVNADECLMTRLQEMSLDYH----FTVEQEVGS 255 (513)
Q Consensus 182 ~a~~~~-~d~I~~lDaD~~~~pd~L~~l~~~~~~-~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~----~~~~~~~~~ 255 (513)
.. . .++++++.+..... -+++.+..+.+ +++..+.. ..+.|+. |.--.+++.. -..+++...
T Consensus 96 fv---~~~~f~l~LGDNi~~~--~l~~~~~~~~~~~~ga~i~~--~~V~dP~-----rfGV~e~d~~~~v~~l~EKP~~P 163 (286)
T COG1209 96 FV---GDDDFVLYLGDNIFQD--GLSELLEHFAEEGSGATILL--YEVDDPS-----RYGVVEFDEDGKVIGLEEKPKEP 163 (286)
T ss_pred hc---CCCceEEEecCceecc--ChHHHHHHHhccCCCcEEEE--EEcCCcc-----cceEEEEcCCCcEEEeEECCCCC
Confidence 88 5 67777766555545 56666666633 23322222 2223432 1111122210 011111111
Q ss_pred cCCCccccccceeeeeHHHHHHcCCCCCCC--ccchHHHHHHHhhCCCeEEEecccccc--cccCcCHH
Q 041333 256 STHAFFGFNGTAGVWRIAAVNEAGGWKDRT--TVEDMDLAVRASLKGWKFLYLGTVKVK--NELPSTFK 320 (513)
Q Consensus 256 ~~~~~~~~~G~~~~~rr~~l~~~gg~~~~~--~~ED~~l~~rl~~~G~~i~~~~~~~~~--~~~p~~~~ 320 (513)
..+ . ..-...+|+.++++.+....+.. =.|=+|....+.++|.++.....--.| +-.|+++-
T Consensus 164 ~SN--l-AvtGlY~~d~~Vf~~~~~ikPS~RGElEITd~i~~~i~~G~~~~~~~~~G~WlDtGt~~sll 229 (286)
T COG1209 164 KSN--L-AVTGLYFYDPSVFEAIKQIKPSARGELEITDAIDLYIEKGYLVVAILIRGWWLDTGTPESLL 229 (286)
T ss_pred CCc--e-eEEEEEEeChHHHHHHHcCCCCCCCceEehHHHHHHHHcCcEEEEEEccceEEecCChhhHH
Confidence 111 1 12335688999998876554432 235677777888999998877654332 33455543
No 132
>PF05045 RgpF: Rhamnan synthesis protein F; InterPro: IPR007739 This family consists of a group of proteins which are related to the Streptococcal rhamnose-glucose polysaccharide assembly protein (RgpF). Rhamnan backbones are found in several O-polysaccharides found in phytopathogenic bacteria and are regarded as pathogenic factors [].
Probab=82.68 E-value=35 Score=36.30 Aligned_cols=122 Identities=16% Similarity=0.276 Sum_probs=69.2
Q ss_pred CCCcEEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccC-ccEEEEEcCCCCCCCh
Q 041333 95 SYPMVLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKG-INIKYEVRDNRKGYKA 173 (513)
Q Consensus 95 ~~P~VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~-~~v~~~~~~~~~g~Ka 173 (513)
..++|.|++=+|-.+ .+++.++.+.+...+ ..++|.-++.+. .+ .+++..++. .+ .++.+...+ |.|--.
T Consensus 263 ~~~kiav~lHv~Y~D-Ll~E~l~~l~~~p~~---~Dl~ITt~~~~~-~~-~i~~~l~~~--~~~~~~~v~vv~-NrGRDi 333 (498)
T PF05045_consen 263 SKKKIAVHLHVFYPD-LLEEILDYLANIPFP---YDLFITTDSEEK-KE-EIEEILAKR--PGFKNAEVRVVE-NRGRDI 333 (498)
T ss_pred CCCcEEEEEEEEcHh-hHHHHHHHHHhCCCC---eEEEEECCchhh-HH-HHHHHHHhc--cCCCceEEEEeC-CCCccH
Confidence 456899999998876 567777777776443 334344332221 12 222222222 22 244444443 444344
Q ss_pred hHHHHHHHhcc-cCCCcEEEEEcCCCCCC--------------------hHHHHHHHHHHhcCCCeeEEEeeE
Q 041333 174 GALREGMKRGY-VKSCDFVVIFDADFQPE--------------------SDFLTRTIPFLVHNPQLALVQARW 225 (513)
Q Consensus 174 ~aln~gl~~a~-~~~~d~I~~lDaD~~~~--------------------pd~L~~l~~~~~~~~~v~~V~~~~ 225 (513)
+++-.+++... ..++|+|+.+.+---++ ++...+++..|+++|++|+|.+..
T Consensus 334 ~pfLv~~~~~l~~~~YD~v~~~HtKKS~~~~~~~g~~wr~~l~~~LL~s~~~v~~Il~~F~~~p~lGlv~P~~ 406 (498)
T PF05045_consen 334 LPFLVGLKDELLDSKYDYVCHLHTKKSPHNDRSDGDSWRRELLDNLLGSKEYVDNILSAFEDDPRLGLVIPDI 406 (498)
T ss_pred HHHHHHHHHHhccCCccEEEEEEcccCcCcCcchHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCceEEeCCc
Confidence 55543333321 13899999987654333 234556677888899999998875
No 133
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=82.43 E-value=15 Score=34.27 Aligned_cols=99 Identities=17% Similarity=0.119 Sum_probs=53.8
Q ss_pred EEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHH
Q 041333 102 QIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMK 181 (513)
Q Consensus 102 iIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~ 181 (513)
++|.-++ ..++.+++++.++. ..+++| |.. ......+.+.+. .+.. ..+.++.+. .+...| -++++..+..
T Consensus 23 ll~i~g~-pli~~~l~~l~~~g--~~~ivv-v~~-~~~~~~~~~~~~-~~~~-~~~~~i~~~-~~~~~g-~~~~l~~a~~ 93 (231)
T cd04183 23 LIEVDGK-PMIEWVIESLAKIF--DSRFIF-ICR-DEHNTKFHLDES-LKLL-APNATVVEL-DGETLG-AACTVLLAAD 93 (231)
T ss_pred eeEECCE-EHHHHHHHhhhccC--CceEEE-EEC-hHHhhhhhHHHH-HHHh-CCCCEEEEe-CCCCCc-HHHHHHHHHh
Confidence 4566565 68899999988765 233433 442 111111111111 1111 123333222 223344 5778888877
Q ss_pred hcccCC-CcEEEEEcCCCCCChHHHHHHHHHH
Q 041333 182 RGYVKS-CDFVVIFDADFQPESDFLTRTIPFL 212 (513)
Q Consensus 182 ~a~~~~-~d~I~~lDaD~~~~pd~L~~l~~~~ 212 (513)
.. + .+.++++++|...+.+....+..+.
T Consensus 94 ~l---~~~~~~lv~~~D~i~~~~~~~~~~~~~ 122 (231)
T cd04183 94 LI---DNDDPLLIFNCDQIVESDLLAFLAAFR 122 (231)
T ss_pred hc---CCCCCEEEEecceeeccCHHHHHHHhh
Confidence 65 3 4778889999998888665554443
No 134
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=82.08 E-value=13 Score=34.06 Aligned_cols=88 Identities=13% Similarity=0.095 Sum_probs=56.3
Q ss_pred CChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHHhcccC
Q 041333 107 NEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMKRGYVK 186 (513)
Q Consensus 107 ne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~~a~~~ 186 (513)
+....++.+++.+... .++++| |..+ . +.. + ... ..++.++..+....|-..++..|++..
T Consensus 31 ~g~~ll~~~i~~l~~~---~~~ivv-v~~~---~--~~~-~----~~~--~~~~~~i~~~~~~~G~~~si~~~l~~~--- 91 (200)
T PRK02726 31 QGVPLLQRVARIAAAC---ADEVYI-ITPW---P--ERY-Q----SLL--PPGCHWLREPPPSQGPLVAFAQGLPQI--- 91 (200)
T ss_pred CCEeHHHHHHHHHHhh---CCEEEE-ECCC---H--HHH-H----hhc--cCCCeEecCCCCCCChHHHHHHHHHhC---
Confidence 4567888888888643 234433 3321 1 111 1 111 124556655544333567899999988
Q ss_pred CCcEEEEEcCCCC-CChHHHHHHHHHHh
Q 041333 187 SCDFVVIFDADFQ-PESDFLTRTIPFLV 213 (513)
Q Consensus 187 ~~d~I~~lDaD~~-~~pd~L~~l~~~~~ 213 (513)
+.|+++++++|.- ++++.++++++..+
T Consensus 92 ~~~~vlv~~~D~P~i~~~~i~~l~~~~~ 119 (200)
T PRK02726 92 KTEWVLLLACDLPRLTVDVLQEWLQQLE 119 (200)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhh
Confidence 7899999999964 59999999998874
No 135
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=82.06 E-value=24 Score=33.03 Aligned_cols=96 Identities=19% Similarity=0.196 Sum_probs=55.0
Q ss_pred EEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHH
Q 041333 102 QIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMK 181 (513)
Q Consensus 102 iIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~ 181 (513)
++|.-|. ..+...++++.+... .+++| |+.. ..+..+... ++....+.++.++..+...| -++++..+.+
T Consensus 25 l~~i~g~-~li~~~l~~l~~~~~--~~i~v-v~~~-~~~~~~~~~----~~~~~~~~~i~~~~~~~~~g-~~~sl~~a~~ 94 (236)
T cd04189 25 LIPVAGK-PIIQYAIEDLREAGI--EDIGI-VVGP-TGEEIKEAL----GDGSRFGVRITYILQEEPLG-LAHAVLAARD 94 (236)
T ss_pred eeEECCc-chHHHHHHHHHHCCC--CEEEE-EcCC-CHHHHHHHh----cchhhcCCeEEEEECCCCCC-hHHHHHHHHH
Confidence 5555454 788899998887642 34444 4433 222222222 11111245566665554445 6788888888
Q ss_pred hcccCC-CcEEEEEcCCCCCChHHHHHHHHHH
Q 041333 182 RGYVKS-CDFVVIFDADFQPESDFLTRTIPFL 212 (513)
Q Consensus 182 ~a~~~~-~d~I~~lDaD~~~~pd~L~~l~~~~ 212 (513)
.. + .++ +++.+|...+++... ++..+
T Consensus 95 ~i---~~~~~-li~~~D~~~~~~~~~-~~~~~ 121 (236)
T cd04189 95 FL---GDEPF-VVYLGDNLIQEGISP-LVRDF 121 (236)
T ss_pred hc---CCCCE-EEEECCeecCcCHHH-HHHHH
Confidence 76 4 455 558889888877554 44443
No 136
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=81.96 E-value=11 Score=33.93 Aligned_cols=87 Identities=13% Similarity=0.193 Sum_probs=54.5
Q ss_pred CChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcC--CCCCCChhHHHHHHHhcc
Q 041333 107 NEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRD--NRKGYKAGALREGMKRGY 184 (513)
Q Consensus 107 ne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~--~~~g~Ka~aln~gl~~a~ 184 (513)
+....+..+++.+... .++++| +.++ .+ . + ... .+.++.++..+ ...| -..++..|++..
T Consensus 25 ~g~pll~~~l~~l~~~---~~~ivv-~~~~-~~-~-~-~~~--------~~~~~~~i~~~~~~~~g-~~~si~~al~~~- 86 (186)
T TIGR02665 25 GGKPLIEHVLARLRPQ---VSDLAI-SANR-NP-E-R-YAQ--------AGFGLPVVPDALADFPG-PLAGILAGLRWA- 86 (186)
T ss_pred CCEEHHHHHHHHHHhh---CCEEEE-EcCC-CH-H-H-Hhh--------ccCCCcEEecCCCCCCC-CHHHHHHHHHhc-
Confidence 4456788888887642 234333 3332 11 1 1 110 11233444432 2234 678888899988
Q ss_pred cCCCcEEEEEcCCC-CCChHHHHHHHHHHh
Q 041333 185 VKSCDFVVIFDADF-QPESDFLTRTIPFLV 213 (513)
Q Consensus 185 ~~~~d~I~~lDaD~-~~~pd~L~~l~~~~~ 213 (513)
+.|.++++++|. .++++.+++++..+.
T Consensus 87 --~~~~vlv~~~D~P~i~~~~i~~l~~~~~ 114 (186)
T TIGR02665 87 --GTDWVLTVPCDTPFLPEDLVARLAAALE 114 (186)
T ss_pred --CCCeEEEEecCCCcCCHHHHHHHHHHhh
Confidence 789999999997 679999999998874
No 137
>KOG3917 consensus Beta-1,4-galactosyltransferase B4GALT7/SQV-3 [Carbohydrate transport and metabolism]
Probab=81.34 E-value=9.4 Score=35.12 Aligned_cols=101 Identities=18% Similarity=0.339 Sum_probs=64.3
Q ss_pred ChhHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecCCCchHHHHHHhhhcchhhHHh
Q 041333 172 KAGALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNADECLMTRLQEMSLDYHFTVEQ 251 (513)
Q Consensus 172 Ka~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~ 251 (513)
.|.-+|.|...|.. -+|||+.-|-|-.|-.+-+.. .-|+. .++.....+.- .-.+++.
T Consensus 122 RAsLINVGf~eas~-~~DYiaMhDVDLLPlN~el~Y------~fP~~---~gp~HiasP~l---------HPkYHY~--- 179 (310)
T KOG3917|consen 122 RASLINVGFNEASR-LCDYIAMHDVDLLPLNPELPY------DFPGI---GGPRHIASPQL---------HPKYHYE--- 179 (310)
T ss_pred hhhheecchhhhcc-hhceeeecccccccCCCCCCC------CCCcc---CCcccccCccc---------Cchhhhh---
Confidence 45566777777643 589999999998774332111 22322 22222222210 0011111
Q ss_pred hhcccCCCccccccceeeeeHHHHHHcCCCCCCC---ccchHHHHHHHhhCCCeEE
Q 041333 252 EVGSSTHAFFGFNGTAGVWRIAAVNEAGGWKDRT---TVEDMDLAVRASLKGWKFL 304 (513)
Q Consensus 252 ~~~~~~~~~~~~~G~~~~~rr~~l~~~gg~~~~~---~~ED~~l~~rl~~~G~~i~ 304 (513)
.+.|.-.+.+++-++...|..... .-||-|+-.|+..+|....
T Consensus 180 ----------~fvGGILll~~~hyk~~NGMSN~yWGWGlEDDEFy~RI~dagLqlt 225 (310)
T KOG3917|consen 180 ----------KFVGGILLLTLKHYKKLNGMSNKYWGWGLEDDEFYLRIIDAGLQLT 225 (310)
T ss_pred ----------hhcceeEEeeHHHHHHhcCccccccccCcccchhhheeccccceEe
Confidence 155888999999999999988766 5699999999999998763
No 138
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=80.77 E-value=19 Score=37.51 Aligned_cols=103 Identities=13% Similarity=0.178 Sum_probs=62.6
Q ss_pred EEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHH
Q 041333 102 QIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMK 181 (513)
Q Consensus 102 iIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~ 181 (513)
++|.-+ ...+..+++++.+... ++++| ++.. .++..++.. . ..++.+...+...| -++++..+++
T Consensus 22 l~~i~g-kpli~~~l~~l~~~g~--~~iii-v~~~-~~~~i~~~~----~-----~~~i~~~~~~~~~G-~~~ai~~a~~ 86 (451)
T TIGR01173 22 LHPLAG-KPMLEHVIDAARALGP--QKIHV-VYGH-GAEQVRKAL----A-----NRDVNWVLQAEQLG-TGHAVLQALP 86 (451)
T ss_pred hceeCC-ccHHHHHHHHHHhCCC--CeEEE-EECC-CHHHHHHHh----c-----CCCcEEEEcCCCCc-hHHHHHHHHH
Confidence 445444 4788899999887653 24444 3332 222222221 1 12455655554444 6778888888
Q ss_pred hcccCCCcEEEEEcCCC-CCChHHHHHHHHHHhcCCCeeEEE
Q 041333 182 RGYVKSCDFVVIFDADF-QPESDFLTRTIPFLVHNPQLALVQ 222 (513)
Q Consensus 182 ~a~~~~~d~I~~lDaD~-~~~pd~L~~l~~~~~~~~~v~~V~ 222 (513)
... ..|.++++++|. ..+++.++++++.+.+ .+..++.
T Consensus 87 ~l~--~~~~~lv~~~D~p~i~~~~~~~l~~~~~~-~~~~~~~ 125 (451)
T TIGR01173 87 FLP--DDGDVLVLYGDVPLISAETLERLLEAHRQ-NGITLLT 125 (451)
T ss_pred hcC--CCCcEEEEECCcCCcCHHHHHHHHHHHhh-CCEEEEE
Confidence 761 347899999998 5789999999987743 3444443
No 139
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=80.48 E-value=21 Score=37.52 Aligned_cols=98 Identities=12% Similarity=0.148 Sum_probs=61.7
Q ss_pred EEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHH
Q 041333 102 QIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMK 181 (513)
Q Consensus 102 iIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~ 181 (513)
++|.-+. ..+..+++++.+... .++.+ |..... +. +.+. + .++.++.+...+...| -++++..+++
T Consensus 25 l~pi~g~-pli~~~l~~l~~~gi--~~iii-v~~~~~-~~---i~~~----~-~~~~~i~~~~~~~~~G-t~~al~~a~~ 90 (459)
T PRK14355 25 MHPLAGR-PMVSWPVAAAREAGA--GRIVL-VVGHQA-EK---VREH----F-AGDGDVSFALQEEQLG-TGHAVACAAP 90 (459)
T ss_pred eceeCCc-cHHHHHHHHHHhcCC--CeEEE-EECCCH-HH---HHHH----h-ccCCceEEEecCCCCC-HHHHHHHHHH
Confidence 5666555 688889998887542 34444 443322 22 2111 1 1223566765555555 5788888887
Q ss_pred hcccCCCcEEEEEcCCC-CCChHHHHHHHHHHhc
Q 041333 182 RGYVKSCDFVVIFDADF-QPESDFLTRTIPFLVH 214 (513)
Q Consensus 182 ~a~~~~~d~I~~lDaD~-~~~pd~L~~l~~~~~~ 214 (513)
... ...|.++++++|. ..+++.++++++.++.
T Consensus 91 ~l~-~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~ 123 (459)
T PRK14355 91 ALD-GFSGTVLILCGDVPLLRAETLQGMLAAHRA 123 (459)
T ss_pred Hhh-ccCCcEEEEECCccCcCHHHHHHHHHHHHh
Confidence 751 1247899999998 6788999999987743
No 140
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=79.69 E-value=32 Score=33.31 Aligned_cols=95 Identities=17% Similarity=0.237 Sum_probs=55.8
Q ss_pred CCCcEEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChh
Q 041333 95 SYPMVLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAG 174 (513)
Q Consensus 95 ~~P~VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~ 174 (513)
..|+ -.+|..++...++.+++.+....-. .++.| |......+ ..+...+ +...++.++..+...| -++
T Consensus 21 ~~PK--~ll~l~g~~~li~~~l~~l~~~~~~-~~i~v-vt~~~~~~----~v~~~l~---~~~~~~~ii~ep~~~g-Ta~ 88 (274)
T cd02509 21 SYPK--QFLKLFGDKSLLQQTLDRLKGLVPP-DRILV-VTNEEYRF----LVREQLP---EGLPEENIILEPEGRN-TAP 88 (274)
T ss_pred CCCc--eEeEcCCCCcHHHHHHHHHhcCCCC-CcEEE-EechHHHH----HHHHHHh---hcCCCceEEECCCCCC-cHH
Confidence 3454 3577777678999999998876322 34444 33321111 2221111 1234566666665555 677
Q ss_pred HHHHHHHhccc-CCCcEEEEEcCCCCCC
Q 041333 175 ALREGMKRGYV-KSCDFVVIFDADFQPE 201 (513)
Q Consensus 175 aln~gl~~a~~-~~~d~I~~lDaD~~~~ 201 (513)
|+..+...... ...+.++++.+|....
T Consensus 89 ai~~a~~~~~~~~~~~~vlVl~~D~~i~ 116 (274)
T cd02509 89 AIALAALYLAKRDPDAVLLVLPSDHLIE 116 (274)
T ss_pred HHHHHHHHHHhcCCCCeEEEecchhccc
Confidence 88777766521 1357999999998775
No 141
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=79.59 E-value=22 Score=33.37 Aligned_cols=96 Identities=11% Similarity=0.207 Sum_probs=53.8
Q ss_pred EEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCC-chhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHH
Q 041333 102 QIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDST-DLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGM 180 (513)
Q Consensus 102 iIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~-D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl 180 (513)
+.|. +....++.+++.+.+.... ++++| +.++.. ++...... . +.++.++..+.. +. .+....++
T Consensus 18 ll~l-~Gkpli~~~i~~l~~~~~~-~~ivV-v~~~~~~~~~i~~~~----~-----~~~v~~v~~~~~-~~-l~~~~~~~ 83 (233)
T cd02518 18 LKPL-GGKPLLEHLLDRLKRSKLI-DEIVI-ATSTNEEDDPLEALA----K-----KLGVKVFRGSEE-DV-LGRYYQAA 83 (233)
T ss_pred cccc-CCccHHHHHHHHHHhCCCC-CeEEE-ECCCCcccHHHHHHH----H-----HcCCeEEECCch-hH-HHHHHHHH
Confidence 3443 4456888999888865422 34433 444332 22222221 1 123445544432 21 11223344
Q ss_pred HhcccCCCcEEEEEcCCCC-CChHHHHHHHHHHhc
Q 041333 181 KRGYVKSCDFVVIFDADFQ-PESDFLTRTIPFLVH 214 (513)
Q Consensus 181 ~~a~~~~~d~I~~lDaD~~-~~pd~L~~l~~~~~~ 214 (513)
+.. +.|+++++++|.- ++++.+++++..+..
T Consensus 84 ~~~---~~d~vli~~~D~P~i~~~~i~~li~~~~~ 115 (233)
T cd02518 84 EEY---NADVVVRITGDCPLIDPEIIDAVIRLFLK 115 (233)
T ss_pred HHc---CCCEEEEeCCCCCCCCHHHHHHHHHHHHh
Confidence 444 7899999999965 599999999988743
No 142
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=79.51 E-value=13 Score=37.17 Aligned_cols=51 Identities=16% Similarity=0.201 Sum_probs=39.8
Q ss_pred CCcEEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHH
Q 041333 96 YPMVLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVE 147 (513)
Q Consensus 96 ~P~VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~ 147 (513)
.+.+.|+|-++|..+.++..|+|+.+...-.. ..+++.-|.-+++...+++
T Consensus 30 ~~~~vivvqVH~r~~yl~~li~sL~~~~~I~~-~llifSHd~~~~ein~~v~ 80 (356)
T PF05060_consen 30 NDSIVIVVQVHNRPEYLKLLIDSLSQARGIEE-ALLIFSHDFYSEEINDLVQ 80 (356)
T ss_pred CCCEEEEEEECCcHHHHHHHHHHHHHhhCccc-eEEEEeccCChHHHHHHHH
Confidence 36789999999999999999999998765544 4444777777777766765
No 143
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=79.49 E-value=69 Score=32.78 Aligned_cols=160 Identities=13% Similarity=0.029 Sum_probs=82.9
Q ss_pred EEEEeCCC--chhHHHHHHHHHHHhhccCccEEEEEcC---CCCCCChh-HHHHHHHhcccCCCcEEEEEcCCCCCChHH
Q 041333 131 IQVLDDST--DLTIKDMVELECQRWASKGINIKYEVRD---NRKGYKAG-ALREGMKRGYVKSCDFVVIFDADFQPESDF 204 (513)
Q Consensus 131 IiV~Dds~--D~t~~~l~~~~~~~~~~~~~~v~~~~~~---~~~g~Ka~-aln~gl~~a~~~~~d~I~~lDaD~~~~pd~ 204 (513)
++|+--+. +++.+..++++.++| -++...... .+...|.- .+..+.+.. +.+|++-.|+|+.+..+-
T Consensus 181 rFVIG~s~~~~~~ldr~Le~Ea~~y----gDIL~lDfvDsY~NLT~KTl~~f~wA~~~~---dAkF~mK~DDDvfVnv~~ 253 (408)
T PLN03193 181 RFVIGHSATSGGILDRAIEAEDRKH----GDFLRLDHVEGYLELSAKTKTYFATAVAMW---DADFYVKVDDDVHVNIAT 253 (408)
T ss_pred EEEeecCCCcchHHHHHHHHHHHHh----CCEEEEecccccccchHHHHHHHHHHHHcC---CCeEEEEcCCCceEcHHH
Confidence 34444443 445555555544444 234333222 22233433 344555666 899999999999999887
Q ss_pred HHHHHHHHhcCCCeeEEEeeEEE---ecC-CCchHHHHHHhhhcchhhHHhhhcccCCCccccccceeeeeHHHHHHcCC
Q 041333 205 LTRTIPFLVHNPQLALVQARWEF---VNA-DECLMTRLQEMSLDYHFTVEQEVGSSTHAFFGFNGTAGVWRIAAVNEAGG 280 (513)
Q Consensus 205 L~~l~~~~~~~~~v~~V~~~~~~---~n~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~gg 280 (513)
|...+..-..+|+ +..|.... .+. +..+.+. ... . .......-+...+|.+.++++++...+-.
T Consensus 254 L~~~L~~~~~~~r--lYiG~m~~gPvr~~~~~ky~ep------e~w-~---~~~~~~~YPpyAsG~gYVlS~DLa~~I~~ 321 (408)
T PLN03193 254 LGETLVRHRKKPR--VYIGCMKSGPVLSQKGVRYHEP------EYW-K---FGENGNKYFRHATGQLYAISKDLASYISI 321 (408)
T ss_pred HHHHHHhcCCCCC--EEEEecccCccccCCCCcCcCc------ccc-c---ccCccccCCCCCCcceEEehHHHHHHHHh
Confidence 7776654322333 33332211 111 1111111 000 0 00011112223679999999999876531
Q ss_pred CCC---CCccchHHHHHHHhhCCCeEEEeccccc
Q 041333 281 WKD---RTTVEDMDLAVRASLKGWKFLYLGTVKV 311 (513)
Q Consensus 281 ~~~---~~~~ED~~l~~rl~~~G~~i~~~~~~~~ 311 (513)
-.. ..-.||..++.-+. |..+.+..+...
T Consensus 322 n~~~L~~y~~EDV~vG~Wl~--~L~V~~vdd~~f 353 (408)
T PLN03193 322 NQHVLHKYANEDVSLGSWFI--GLDVEHIDDRRL 353 (408)
T ss_pred ChhhhcccCcchhhhhhHhc--cCCceeeecccc
Confidence 111 12589999999885 556666766544
No 144
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=78.93 E-value=27 Score=32.76 Aligned_cols=93 Identities=17% Similarity=0.151 Sum_probs=53.6
Q ss_pred CChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHHhcccC
Q 041333 107 NEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMKRGYVK 186 (513)
Q Consensus 107 ne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~~a~~~ 186 (513)
+....++.+++++.+...- ++++| +.|+ +...... ++ .+.++.+.. +...++.+ .+..+++..
T Consensus 25 ~GkPli~~~i~~l~~~~~~-~~ivv-~t~~---~~i~~~~----~~---~~~~v~~~~-~~~~~g~~-~~~~a~~~~--- 87 (238)
T PRK13368 25 LGKPMIQHVYERAAQAAGV-EEVYV-ATDD---QRIEDAV----EA---FGGKVVMTS-DDHLSGTD-RLAEVMLKI--- 87 (238)
T ss_pred CCcCHHHHHHHHHHhcCCC-CeEEE-ECCh---HHHHHHH----HH---cCCeEEecC-ccCCCccH-HHHHHHHhC---
Confidence 3456788888888875222 34433 3332 2222222 22 234443322 22233344 344566665
Q ss_pred CCcEEEEEcCCC-CCChHHHHHHHHHHhcCC
Q 041333 187 SCDFVVIFDADF-QPESDFLTRTIPFLVHNP 216 (513)
Q Consensus 187 ~~d~I~~lDaD~-~~~pd~L~~l~~~~~~~~ 216 (513)
..|.++++++|. .+.++.+.+++..+..++
T Consensus 88 ~~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~ 118 (238)
T PRK13368 88 EADIYINVQGDEPMIRPRDIDTLIQPMLDDP 118 (238)
T ss_pred CCCEEEEEcCCcCcCCHHHHHHHHHHHHHCC
Confidence 678999999998 568999999998885444
No 145
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=78.80 E-value=42 Score=31.73 Aligned_cols=186 Identities=14% Similarity=0.121 Sum_probs=89.4
Q ss_pred EeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEE-cCCCCCCChhHHHHHHH
Q 041333 103 IPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEV-RDNRKGYKAGALREGMK 181 (513)
Q Consensus 103 IP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~-~~~~~g~Ka~aln~gl~ 181 (513)
++. +....+..+++.+.+.. -++++| +.|+ +..... +++ .+ +..+. .+...||.. ....+++
T Consensus 19 ~~l-~GkPli~~~le~~~~~~--~d~VvV-vt~~---~~i~~~----~~~---~g--~~~v~~~~~~~~Gt~-r~~~~~~ 81 (238)
T TIGR00466 19 EDI-FGKPMIVHVAENANESG--ADRCIV-ATDD---ESVAQT----CQK---FG--IEVCMTSKHHNSGTE-RLAEVVE 81 (238)
T ss_pred ccc-CCcCHHHHHHHHHHhCC--CCeEEE-EeCH---HHHHHH----HHH---cC--CEEEEeCCCCCChhH-HHHHHHH
Confidence 344 44557888888877543 345444 4442 222222 222 23 33332 223334322 3333333
Q ss_pred hcccCCCcEEEEEcCCCC-CChHHHHHHHHHHhcCCCeeEEEeeEEEecCC----CchHHHHHH-hhhcchhhHH--hhh
Q 041333 182 RGYVKSCDFVVIFDADFQ-PESDFLTRTIPFLVHNPQLALVQARWEFVNAD----ECLMTRLQE-MSLDYHFTVE--QEV 253 (513)
Q Consensus 182 ~a~~~~~d~I~~lDaD~~-~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~~----~~~~~~~~~-~~~~~~~~~~--~~~ 253 (513)
.....+.|+|+++|+|.- ++|+.+.+++..+. +++.+++..-....+.. ++-.....+ -.....+... ...
T Consensus 82 ~l~~~~~d~Vli~~gD~Pli~~~~I~~li~~~~-~~~~~~a~~~~~~~d~~~~~~p~~vk~v~~~~g~alyfsr~~ip~~ 160 (238)
T TIGR00466 82 KLALKDDERIVNLQGDEPFIPKEIIRQVADNLA-TKNVPMAALAVKIHDAEEAFNPNAVKVVLDSQGYALYFSRSLIPFD 160 (238)
T ss_pred HhCCCCCCEEEEEcCCcCcCCHHHHHHHHHHHh-cCCCCEEEEeeecCCHHHccCCCceEEEeCCCCeEEEecCCCCCCC
Confidence 221115689999999965 69999999999883 43344333332221200 000000000 0000000000 000
Q ss_pred ccc------CCC-ccccccceeeeeHHHHHHcCCCCCCC--ccchHHHHHHHhhCCCeEEEec
Q 041333 254 GSS------THA-FFGFNGTAGVWRIAAVNEAGGWKDRT--TVEDMDLAVRASLKGWKFLYLG 307 (513)
Q Consensus 254 ~~~------~~~-~~~~~G~~~~~rr~~l~~~gg~~~~~--~~ED~~l~~rl~~~G~~i~~~~ 307 (513)
++. ... ...-+=+-..||+++|++.-.++... -.|+.|- +|+..+|+++....
T Consensus 161 R~~~~~~~tpq~~~~~~h~Giy~~~~~~L~~~~~~~~~~le~~e~leq-lr~le~g~~i~~~~ 222 (238)
T TIGR00466 161 RDFFAKRQTPVGDNLLRHIGIYGYRAGFIEEYVAWKPCVLEEIEKLEQ-LRVLYYGEKIHVKI 222 (238)
T ss_pred CCcccccccccccceeEEEEEEeCCHHHHHHHHhCCCCcccccchhHH-HhhhhcCCceEEEE
Confidence 010 000 01112335679999999987776544 4466664 67789999987654
No 146
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=78.71 E-value=9.8 Score=35.96 Aligned_cols=99 Identities=17% Similarity=0.283 Sum_probs=63.1
Q ss_pred EEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHH
Q 041333 102 QIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMK 181 (513)
Q Consensus 102 iIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~ 181 (513)
++|..|....+...|+.+.+... .++++ |+-+...+..+... ++....+.++.++..+...| -++|+..+..
T Consensus 24 ll~i~g~~pli~~~l~~l~~~g~--~~ii~-V~~~~~~~~i~~~~----~~~~~~~~~i~~i~~~~~~G-ta~al~~a~~ 95 (248)
T PF00483_consen 24 LLPIGGKYPLIDYVLENLANAGI--KEIIV-VVNGYKEEQIEEHL----GSGYKFGVKIEYIVQPEPLG-TAGALLQALD 95 (248)
T ss_dssp GSEETTEEEHHHHHHHHHHHTTC--SEEEE-EEETTTHHHHHHHH----TTSGGGTEEEEEEEESSSSC-HHHHHHHTHH
T ss_pred cceecCCCcchhhhhhhhcccCC--ceEEE-EEeecccccccccc----cccccccccceeeecccccc-hhHHHHHHHH
Confidence 45666775789999999988543 34334 44443333332222 22212234688887777666 7899999888
Q ss_pred hcccCCCc----EEEEEcCCCCCChHHHHHHHHHH
Q 041333 182 RGYVKSCD----FVVIFDADFQPESDFLTRTIPFL 212 (513)
Q Consensus 182 ~a~~~~~d----~I~~lDaD~~~~pd~L~~l~~~~ 212 (513)
.. +.+ .++++.+|...+.+ +..++...
T Consensus 96 ~i---~~~~~~~~~lv~~gD~i~~~~-~~~~l~~~ 126 (248)
T PF00483_consen 96 FI---EEEDDDEDFLVLNGDIIFDDD-LQDMLEFH 126 (248)
T ss_dssp HH---TTSEE-SEEEEETTEEEESTT-HHHHHHHH
T ss_pred Hh---hhccccceEEEEeccccccch-hhhHHHhh
Confidence 87 544 49999999988874 45555554
No 147
>KOG1022 consensus Acetylglucosaminyltransferase EXT2/exostosin 2 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=78.59 E-value=8.7 Score=39.95 Aligned_cols=117 Identities=11% Similarity=0.112 Sum_probs=70.7
Q ss_pred CCCCCcEEEEEeccCChHHHHHHHHHHHcCCCCCC-eeEEEEEeC-CCchhHHHHHHHHHHHhhccCccEEEEEcCCCCC
Q 041333 93 NSSYPMVLVQIPMFNEREVYQLSIGAACGLSWPSD-RLIIQVLDD-STDLTIKDMVELECQRWASKGINIKYEVRDNRKG 170 (513)
Q Consensus 93 ~~~~P~VsIiIP~yne~~~l~~~l~sl~~q~yp~~-~i~IiV~Dd-s~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g 170 (513)
+++....|.++-+||+-+.+...+....+- |+- +++| |=++ +..+..+ ..+. .-...+++....+|
T Consensus 439 k~~~qgFTlim~TYdR~d~L~k~v~~ys~v--PsL~kIlV-VWNnq~k~PP~e-s~~~------~~~VPlr~r~qkeN-- 506 (691)
T KOG1022|consen 439 KGHSQGFTLIMLTYDRVDLLKKLVKHYSRV--PSLKKILV-VWNNQGKNPPPE-SLEP------DIAVPLRFRQQKEN-- 506 (691)
T ss_pred CCcccceeeeeehHHHHHHHHHHHHHHhhC--CCcceEEE-EecCCCCCCChh-hccc------cCCccEEEEehhhh--
Confidence 345567999999999888888888776553 443 4444 4444 3333322 2211 11233444322221
Q ss_pred CChhHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEE
Q 041333 171 YKAGALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWE 226 (513)
Q Consensus 171 ~Ka~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~ 226 (513)
|-.|+-.-.... +.|-|+-+|+|.+++-|-|.-..+-.++.|+- +|+-..+
T Consensus 507 -sLnNRF~~~pei---eT~AVL~IDDDIim~~ddldFgf~VWrefPD~-lVGF~pR 557 (691)
T KOG1022|consen 507 -SLNNRFEPYPEI---ETEAVLEIDDDIIMPCDDLDFGFEVWREFPDR-LVGFVPR 557 (691)
T ss_pred -hhhcccccCccc---ccceeEEecCceeeecchhHHHHHHHHhCccc-eeccCcc
Confidence 233333444455 89999999999999988888888777777763 4444333
No 148
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=77.78 E-value=14 Score=34.63 Aligned_cols=101 Identities=14% Similarity=0.229 Sum_probs=56.6
Q ss_pred EEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhh-ccCccEEEEEcCCCCCCChhHHHHHH
Q 041333 102 QIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWA-SKGINIKYEVRDNRKGYKAGALREGM 180 (513)
Q Consensus 102 iIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~-~~~~~v~~~~~~~~~g~Ka~aln~gl 180 (513)
++|.-+. ..+..+++++.++.. .++.| |+....+ ...... +++. ..+.++.+...+...| -++++..+.
T Consensus 25 llpv~g~-pli~~~l~~l~~~g~--~~v~i-v~~~~~~-~~~~~l----~~~~~~~~~~i~~~~~~~~~G-~~~al~~a~ 94 (233)
T cd06425 25 LVEFCNK-PMIEHQIEALAKAGV--KEIIL-AVNYRPE-DMVPFL----KEYEKKLGIKITFSIETEPLG-TAGPLALAR 94 (233)
T ss_pred cCeECCc-chHHHHHHHHHHCCC--cEEEE-EeeeCHH-HHHHHH----hcccccCCeEEEeccCCCCCc-cHHHHHHHH
Confidence 4565555 789999999988753 34444 4433222 222222 2221 1234444433344444 678888888
Q ss_pred HhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhc
Q 041333 181 KRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVH 214 (513)
Q Consensus 181 ~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~ 214 (513)
+.......+ ++++++|...+.+ +.+++..+++
T Consensus 95 ~~~~~~~~~-~lv~~~D~~~~~~-~~~~~~~~~~ 126 (233)
T cd06425 95 DLLGDDDEP-FFVLNSDVICDFP-LAELLDFHKK 126 (233)
T ss_pred HHhccCCCC-EEEEeCCEeeCCC-HHHHHHHHHH
Confidence 876211234 5777999887766 4677776643
No 149
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=77.65 E-value=15 Score=35.86 Aligned_cols=100 Identities=12% Similarity=0.134 Sum_probs=58.5
Q ss_pred EEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHH
Q 041333 101 VQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGM 180 (513)
Q Consensus 101 IiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl 180 (513)
-++|+++. ..+...|+.+..... .++.| |......+..+... .+..+-+.++.+...+++.| -++|+-.+.
T Consensus 23 ~Llpv~gk-PmI~~~L~~l~~aGi--~~I~i-v~~~~~~~~~~~~l----g~g~~~g~~i~~~~q~~~~G-ta~al~~a~ 93 (286)
T TIGR01207 23 QLLPIYDK-PMIYYPLSTLMLAGI--RDILI-ISTPQDTPRFQQLL----GDGSQWGVNLSYAVQPSPDG-LAQAFIIGE 93 (286)
T ss_pred eeeEECCE-EhHHHHHHHHHHCCC--CEEEE-EecCCcHHHHHHHh----ccccccCceEEEEEccCCCC-HHHHHHHHH
Confidence 47888887 688888888887643 24433 33222212222121 11112356788887766666 689998888
Q ss_pred HhcccCCCcEEEEEcCCCCCChHHHHHHHHHH
Q 041333 181 KRGYVKSCDFVVIFDADFQPESDFLTRTIPFL 212 (513)
Q Consensus 181 ~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~ 212 (513)
+... +.+++++. .|..+.+.-+.+++...
T Consensus 94 ~~l~--~~~~~li~-gD~i~~~~~l~~ll~~~ 122 (286)
T TIGR01207 94 DFIG--GDPSALVL-GDNIFYGHDLSDLLKRA 122 (286)
T ss_pred HHhC--CCCEEEEE-CCEeccccCHHHHHHHH
Confidence 8861 34566555 66555445566666654
No 150
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=77.57 E-value=6.8 Score=37.73 Aligned_cols=198 Identities=13% Similarity=0.062 Sum_probs=100.5
Q ss_pred CCCcEEEEEec-cCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCCh
Q 041333 95 SYPMVLVQIPM-FNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKA 173 (513)
Q Consensus 95 ~~P~VsIiIP~-yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka 173 (513)
..|+.-+.+|+ +++.+.+...++.. ..++.+.++.-|+..|+--+ + +|.+ +..++.. .++.|-
T Consensus 39 ~~~k~Lla~~VG~kqk~~vd~~v~Kf----~~nF~i~LfhYDg~vd~w~~-~------~ws~---~aiHv~~--~kqtKw 102 (294)
T PF05212_consen 39 KKPKYLLAMTVGIKQKDNVDAIVKKF----SDNFDIMLFHYDGRVDEWDD-F------EWSD---RAIHVSA--RKQTKW 102 (294)
T ss_pred CCCceEEEEEecHHHHhhhhHHHhhh----ccCceEEEEEecCCcCchhh-c------cccc---ceEEEEe--ccceEE
Confidence 34567777777 45555666665544 23567777788998775422 1 1211 2222222 122232
Q ss_pred hHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeE-----------EEecCCCchHHHHHHhh
Q 041333 174 GALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARW-----------EFVNADECLMTRLQEMS 242 (513)
Q Consensus 174 ~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~-----------~~~n~~~~~~~~~~~~~ 242 (513)
.-...-+.--....+|||.+.|.|..++...+.+.+..+ ...+..+.|+.. ...+.+.
T Consensus 103 w~akrfLHPdiv~~YdYiflwDeDL~vd~f~~~ry~~Iv-k~~gLeISQPALd~~~~~~~~~iT~R~~~~---------- 171 (294)
T PF05212_consen 103 WFAKRFLHPDIVAPYDYIFLWDEDLGVDHFDINRYFEIV-KKEGLEISQPALDPDSSEIHHPITKRRPDS---------- 171 (294)
T ss_pred eehhhhcChhhhccceeEEecCCccCcCcCCHHHHHHHH-HHhCCcccCcccCCCCceeeeeEEeecCCc----------
Confidence 222222211011489999999999888776666766655 223333333322 2112111
Q ss_pred hcchhh-HHhh-hcccCCCccc---cccceeeeeHHHHHHcCCC-CCCC---ccchHHHHHHHhhCCCeEEEeccccccc
Q 041333 243 LDYHFT-VEQE-VGSSTHAFFG---FNGTAGVWRIAAVNEAGGW-KDRT---TVEDMDLAVRASLKGWKFLYLGTVKVKN 313 (513)
Q Consensus 243 ~~~~~~-~~~~-~~~~~~~~~~---~~G~~~~~rr~~l~~~gg~-~~~~---~~ED~~l~~rl~~~G~~i~~~~~~~~~~ 313 (513)
..+.. .... .......+.| .-...=+|+|++++-+-.. ..+. .+=|+.++..+..+..++..++...+.|
T Consensus 172 -~vhr~~~~~~~~~~~~~~ppct~fVEiMAPVFSr~Awrcvw~miqNDLvhGWGLDf~~~~c~~~~~~kiGVVDs~~VvH 250 (294)
T PF05212_consen 172 -EVHRKTRGGPRCCDDSTGPPCTGFVEIMAPVFSRAAWRCVWHMIQNDLVHGWGLDFKWGYCAGDRHKKIGVVDSQYVVH 250 (294)
T ss_pred -eeEeccCCCCCcCCCCCCCCcceEEEEecceechHHHHHHHhcccCCCccccchhhhHHHHhccccccEEEEeeEEEEE
Confidence 00000 0000 0011111111 1133447999999765322 2221 5668899988877888998888776655
Q ss_pred ccCcCHH
Q 041333 314 ELPSTFK 320 (513)
Q Consensus 314 ~~p~~~~ 320 (513)
....|+.
T Consensus 251 ~gvptLG 257 (294)
T PF05212_consen 251 TGVPTLG 257 (294)
T ss_pred cCCCcCC
Confidence 5544443
No 151
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=77.54 E-value=50 Score=33.32 Aligned_cols=195 Identities=14% Similarity=0.041 Sum_probs=101.6
Q ss_pred CcEEEEEeccCChHHHHHHHHH-HHcCCC-CCCeeEE-EEEe-CCCchhHHHHHHHHHHHhhccCccEEEEEcCC---CC
Q 041333 97 PMVLVQIPMFNEREVYQLSIGA-ACGLSW-PSDRLII-QVLD-DSTDLTIKDMVELECQRWASKGINIKYEVRDN---RK 169 (513)
Q Consensus 97 P~VsIiIP~yne~~~l~~~l~s-l~~q~y-p~~~i~I-iV~D-ds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~---~~ 169 (513)
|.+-++|...-+.-.-++.++. ..++.. .+.++.+ +++- .+..+..+..+.++.+.| .++....-.+ +.
T Consensus 95 ~~lLl~V~S~~~~farR~aiR~TW~~~~~v~~~~v~~~FLvG~~~~~~~~~~~l~~Ea~~y----gDIi~~df~Dty~nl 170 (349)
T KOG2287|consen 95 PELLLLVKSAPDNFARRNAIRKTWGNENNVRGGRVRVLFLVGLPSNEDKLNKLLADEARLY----GDIIQVDFEDTYFNL 170 (349)
T ss_pred ceEEEEEecCCCCHHHHHHHHHHhcCccccCCCcEEEEEEecCCCcHHHHHHHHHHHHHHh----CCEEEEecccchhch
Confidence 5677777776555333333332 233332 1223322 2332 232222233333333333 3444443332 33
Q ss_pred CCCh-hHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeEEEecC-CCchHHHHHHhhhcchh
Q 041333 170 GYKA-GALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARWEFVNA-DECLMTRLQEMSLDYHF 247 (513)
Q Consensus 170 g~Ka-~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~-~~~~~~~~~~~~~~~~~ 247 (513)
..|. ..++.+...+ ++.++|+-+|+|+.+.++-|.+.+... .+|.-....|....... ....-++ ++
T Consensus 171 tlKtl~~l~w~~~~c--p~akfi~K~DDDvfv~~~~L~~~L~~~-~~~~~~~~~G~v~~~~~p~R~~~~K--------wy 239 (349)
T KOG2287|consen 171 TLKTLAILLWGVSKC--PDAKFILKIDDDVFVNPDNLLEYLDKL-NDPSSDLYYGRVIQNAPPIRDKTSK--------WY 239 (349)
T ss_pred HHHHHHHHHHHHhcC--CcceEEEeccCceEEcHHHHHHHHhcc-CCCCcceEEEeecccCCCCCCCCCC--------Cc
Confidence 3443 3356666655 379999999999999988877776654 25666777776543211 0000001 00
Q ss_pred hHHhhhcccCCCccccccceeeeeHHHHHHcCC---CCCCCccchHHHHHHHhhC-CCeEEEec
Q 041333 248 TVEQEVGSSTHAFFGFNGTAGVWRIAAVNEAGG---WKDRTTVEDMDLAVRASLK-GWKFLYLG 307 (513)
Q Consensus 248 ~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~gg---~~~~~~~ED~~l~~rl~~~-G~~i~~~~ 307 (513)
... ..-....-+..++|.+.++.+++.+.+-. .....-.||..++.-+.+. |.+-.-.+
T Consensus 240 Vp~-~~y~~~~YP~Y~sG~gYvis~~~a~~l~~~s~~~~~~~iEDV~~g~~l~~~~gi~~~~~~ 302 (349)
T KOG2287|consen 240 VPE-SEYPCSVYPPYASGPGYVISGDAARRLLKASKHLKFFPIEDVFVGGCLAEDLGIKPVNHP 302 (349)
T ss_pred cCH-HHCCCCCCCCcCCCceeEecHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCcccCc
Confidence 000 00111122233679999999999876533 1122256999999999887 65544444
No 152
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=77.47 E-value=17 Score=33.11 Aligned_cols=111 Identities=11% Similarity=0.144 Sum_probs=59.2
Q ss_pred CCCcEEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhc--cCccEEEEEc------C
Q 041333 95 SYPMVLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWAS--KGINIKYEVR------D 166 (513)
Q Consensus 95 ~~P~VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~--~~~~v~~~~~------~ 166 (513)
..|+ .++|..|....+..+++.+.+... .+++| |.....+ ........ ..+|.. +..++.++.. +
T Consensus 18 ~~pK--~llpv~g~~pli~~~l~~l~~~gi--~~iiv-v~~~~~~-~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (200)
T cd02508 18 KRAK--PAVPFGGRYRLIDFPLSNMVNSGI--RNVGV-LTQYKSR-SLNDHLGS-GKEWDLDRKNGGLFILPPQQRKGGD 90 (200)
T ss_pred CCcc--eeeEECCeeeeHHHHHHHHHHCCC--CEEEE-EeCCChH-HHHHHHhC-CCcccCCCCCCCEEEeCcccCCCCC
Confidence 3555 377887764578888888887542 34444 4433222 22211110 001100 0112444431 2
Q ss_pred CCCCCChhHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhc
Q 041333 167 NRKGYKAGALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVH 214 (513)
Q Consensus 167 ~~~g~Ka~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~ 214 (513)
...| -++++..+.+.....+.|.++++-+|.+. +.-+.+++..+++
T Consensus 91 ~~~G-ta~al~~a~~~i~~~~~~~~lv~~gD~v~-~~~~~~~l~~~~~ 136 (200)
T cd02508 91 WYRG-TADAIYQNLDYIERSDPEYVLILSGDHIY-NMDYREMLDFHIE 136 (200)
T ss_pred cccC-cHHHHHHHHHHHHhCCCCEEEEecCCEEE-ecCHHHHHHHHHH
Confidence 2344 68888888876521135788899999854 4457777776533
No 153
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=75.96 E-value=27 Score=32.69 Aligned_cols=98 Identities=9% Similarity=0.103 Sum_probs=55.8
Q ss_pred CChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHHhcccC
Q 041333 107 NEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMKRGYVK 186 (513)
Q Consensus 107 ne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~~a~~~ 186 (513)
++...+..+++++.+.... ++++| |+++......+ ..++++.....++.++. +..+ ...+...|++...
T Consensus 28 ~gkpll~~~i~~~~~~~~~-~~ivV-v~~~~~~~~~~----~~~~~~~~~~~~~~~v~--~g~~-r~~sv~~gl~~~~-- 96 (230)
T PRK13385 28 VGEPIFIHALRPFLADNRC-SKIII-VTQAQERKHVQ----DLMKQLNVADQRVEVVK--GGTE-RQESVAAGLDRIG-- 96 (230)
T ss_pred CCeEHHHHHHHHHHcCCCC-CEEEE-EeChhhHHHHH----HHHHhcCcCCCceEEcC--CCch-HHHHHHHHHHhcc--
Confidence 5567889999988765322 34444 55432212111 11222211111333332 1122 3467778887652
Q ss_pred CCcEEEEEcCCC-CCChHHHHHHHHHHhcC
Q 041333 187 SCDFVVIFDADF-QPESDFLTRTIPFLVHN 215 (513)
Q Consensus 187 ~~d~I~~lDaD~-~~~pd~L~~l~~~~~~~ 215 (513)
..+++++.|+|. .++++.+++++..+..+
T Consensus 97 ~~d~vli~~~d~P~i~~~~i~~li~~~~~~ 126 (230)
T PRK13385 97 NEDVILVHDGARPFLTQDIIDRLLEGVAKY 126 (230)
T ss_pred CCCeEEEccCCCCCCCHHHHHHHHHHHhhC
Confidence 458899999995 55999999999988443
No 154
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=75.37 E-value=55 Score=31.88 Aligned_cols=100 Identities=11% Similarity=0.222 Sum_probs=52.8
Q ss_pred cEEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEE-eCCCchhHHHHHHHHHHHhhccCccEEEEEcCC---C-----
Q 041333 98 MVLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVL-DDSTDLTIKDMVELECQRWASKGINIKYEVRDN---R----- 168 (513)
Q Consensus 98 ~VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~-Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~---~----- 168 (513)
.++|+....|-...+..++.|++.-. +..+.+.|. |+.+++..+.+.+ .+...+..+.....++ .
T Consensus 2 ~~~iv~~~~~y~~~~~~~i~Sil~n~--~~~~~fhii~d~~s~~~~~~l~~----~~~~~~~~i~f~~i~~~~~~~~~~~ 75 (280)
T cd06431 2 HVAIVCAGYNASRDVVTLVKSVLFYR--RNPLHFHLITDEIARRILATLFQ----TWMVPAVEVSFYNAEELKSRVSWIP 75 (280)
T ss_pred EEEEEEccCCcHHHHHHHHHHHHHcC--CCCEEEEEEECCcCHHHHHHHHH----hccccCcEEEEEEhHHhhhhhccCc
Confidence 36777777554578899999998653 233444444 4454554444432 2222245555554321 1
Q ss_pred CCCChhHH---HHHHHhcccCCCcEEEEEcCCCCCChH
Q 041333 169 KGYKAGAL---REGMKRGYVKSCDFVVIFDADFQPESD 203 (513)
Q Consensus 169 ~g~Ka~al---n~gl~~a~~~~~d~I~~lDaD~~~~pd 203 (513)
....+... -..+......+.|=|+.+|+|.++..|
T Consensus 76 ~~~~s~~y~y~RL~ip~llp~~~dkvLYLD~Diiv~~d 113 (280)
T cd06431 76 NKHYSGIYGLMKLVLTEALPSDLEKVIVLDTDITFATD 113 (280)
T ss_pred ccchhhHHHHHHHHHHHhchhhcCEEEEEcCCEEEcCC
Confidence 01111110 111222211258899999999888544
No 155
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=74.93 E-value=30 Score=33.97 Aligned_cols=100 Identities=13% Similarity=0.176 Sum_probs=59.7
Q ss_pred EEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHH
Q 041333 101 VQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGM 180 (513)
Q Consensus 101 IiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl 180 (513)
-++|+++. ..+...|+++..... .++.| |......+..+... .+..+-+.++.|...+++.| -++|+..+.
T Consensus 27 ~Llpv~gk-PmI~~~l~~l~~aGi--~~I~i-i~~~~~~~~~~~~l----~~g~~~g~~i~y~~q~~~~G-ta~Al~~a~ 97 (292)
T PRK15480 27 QLLPIYDK-PMIYYPLSTLMLAGI--RDILI-ISTPQDTPRFQQLL----GDGSQWGLNLQYKVQPSPDG-LAQAFIIGE 97 (292)
T ss_pred eEeEECCE-EHHHHHHHHHHHCCC--CEEEE-EecCCchHHHHHHH----cCccccCceeEEEECCCCCC-HHHHHHHHH
Confidence 47888887 688888888887643 33433 43332222222222 11112356788887776666 789998888
Q ss_pred HhcccCCCcEEEEEcCCCCCChHHHHHHHHHH
Q 041333 181 KRGYVKSCDFVVIFDADFQPESDFLTRTIPFL 212 (513)
Q Consensus 181 ~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~ 212 (513)
+... +.+++++. .|+.+...-+.+++...
T Consensus 98 ~~i~--~~~~~lv~-gD~i~~~~~l~~ll~~~ 126 (292)
T PRK15480 98 EFIG--GDDCALVL-GDNIFYGHDLPKLMEAA 126 (292)
T ss_pred HHhC--CCCEEEEE-CCeeeeccCHHHHHHHH
Confidence 8761 34666666 55544344467777655
No 156
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=74.81 E-value=48 Score=31.20 Aligned_cols=97 Identities=16% Similarity=0.170 Sum_probs=52.2
Q ss_pred EeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHHh
Q 041333 103 IPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMKR 182 (513)
Q Consensus 103 IP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~~ 182 (513)
+|. +....+..+++.+.+.. .++++| +.+ ++..... .++ .+..+.+...+...| ..+. ..+++.
T Consensus 22 l~i-~Gkpll~~~l~~l~~~~--i~~ivv-v~~---~~~i~~~----~~~---~~~~v~~~~~~~~~g-t~~~-~~~~~~ 85 (245)
T PRK05450 22 ADI-GGKPMIVRVYERASKAG--ADRVVV-ATD---DERIADA----VEA---FGGEVVMTSPDHPSG-TDRI-AEAAAK 85 (245)
T ss_pred ccc-CCcCHHHHHHHHHHhcC--CCeEEE-ECC---cHHHHHH----HHH---cCCEEEECCCcCCCc-hHHH-HHHHHh
Confidence 344 44568888888887652 234433 332 1222211 122 234443332232223 3332 333333
Q ss_pred cccCCCcEEEEEcCCC-CCChHHHHHHHHHHhcC
Q 041333 183 GYVKSCDFVVIFDADF-QPESDFLTRTIPFLVHN 215 (513)
Q Consensus 183 a~~~~~d~I~~lDaD~-~~~pd~L~~l~~~~~~~ 215 (513)
......|.++++++|. .++++.+++++..+..+
T Consensus 86 ~~~~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~ 119 (245)
T PRK05450 86 LGLADDDIVVNVQGDEPLIPPEIIDQVAEPLANP 119 (245)
T ss_pred cCCCCCCEEEEecCCCCCCCHHHHHHHHHHHhcC
Confidence 2111468899999998 77999999999877433
No 157
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=73.78 E-value=55 Score=30.64 Aligned_cols=99 Identities=14% Similarity=0.138 Sum_probs=54.3
Q ss_pred EEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHH
Q 041333 102 QIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMK 181 (513)
Q Consensus 102 iIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~ 181 (513)
++|. +....++..++.+.+..-. ++++| +.+ ++. + ++...+ .+.++.+...... ++.++ +-.+++
T Consensus 20 l~~i-~gkpll~~~l~~l~~~~~i-~~ivv-v~~---~~~---i-~~~~~~---~~~~~~~~~~~~~-~gt~~-~~~~~~ 84 (239)
T cd02517 20 LADI-AGKPMIQHVYERAKKAKGL-DEVVV-ATD---DER---I-ADAVES---FGGKVVMTSPDHP-SGTDR-IAEVAE 84 (239)
T ss_pred Cccc-CCcCHHHHHHHHHHhCCCC-CEEEE-ECC---cHH---H-HHHHHH---cCCEEEEcCcccC-chhHH-HHHHHH
Confidence 3444 4456888888888865211 33333 332 121 2 211222 2333433222222 33343 444555
Q ss_pred hcccCCC--cEEEEEcCCC-CCChHHHHHHHHHHhcCCCe
Q 041333 182 RGYVKSC--DFVVIFDADF-QPESDFLTRTIPFLVHNPQL 218 (513)
Q Consensus 182 ~a~~~~~--d~I~~lDaD~-~~~pd~L~~l~~~~~~~~~v 218 (513)
.. .. |.++++++|. .++++.+.+++..+..+++.
T Consensus 85 ~~---~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~ 121 (239)
T cd02517 85 KL---DADDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGV 121 (239)
T ss_pred hc---CCCCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCC
Confidence 54 43 8899999998 77999999999877544344
No 158
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=72.40 E-value=83 Score=31.02 Aligned_cols=119 Identities=13% Similarity=0.016 Sum_probs=56.4
Q ss_pred EEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCc--cEEEEEcCCCC--C----
Q 041333 99 VLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGI--NIKYEVRDNRK--G---- 170 (513)
Q Consensus 99 VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~--~v~~~~~~~~~--g---- 170 (513)
|+|+..-.+ .+.+..+|.|++....-+.++.| +.|+..++..++..++..+.+ .... .+.-+.-+... +
T Consensus 3 ~~vv~~g~~-~~~~~~~lkSil~~n~~~l~Fhi-~~d~~~~~~~~~~l~~~~~~~-~~~i~~~i~~I~~P~~~~~~ws~l 79 (304)
T cd06430 3 LAVVACGER-LEETLTMLKSAIVFSQKPLRFHI-FAEDQLKQSFKEKLDDWPELI-DRKFNYTLHPITFPSGNAAEWKKL 79 (304)
T ss_pred EEEEEcCCc-HHHHHHHHHHHHHhCCCCEEEEE-EECCccCHHHHHHHHHHHHhc-cceeeeEEEEEecCccchhhhhhc
Confidence 556666656 46678888998754433345555 455544444444343332211 1112 33333333221 1
Q ss_pred CChhHHHH-HHHhcccCCCcEEEEEcCCCCCChH--HHHHHHHHHhcCCCeeEEE
Q 041333 171 YKAGALRE-GMKRGYVKSCDFVVIFDADFQPESD--FLTRTIPFLVHNPQLALVQ 222 (513)
Q Consensus 171 ~Ka~aln~-gl~~a~~~~~d~I~~lDaD~~~~pd--~L~~l~~~~~~~~~v~~V~ 222 (513)
.|..+.-. .+.... ++-|-++.+|+|.++..+ -|-.+...| .+..++++.
T Consensus 80 ~~~~~y~RL~ip~lL-p~~dkvLYLD~Dii~~~dI~eL~~~~~df-~~~~~aA~v 132 (304)
T cd06430 80 FKPCAAQRLFLPSLL-PDVDSLLYVDTDILFLRPVEEIWSFLKKF-NSTQLAAMA 132 (304)
T ss_pred ccHHHHHHHHHHHHh-hhhceEEEeccceeecCCHHHHHHHHhhc-CCCeEEEEE
Confidence 11112111 111111 356899999999888543 333333334 333455553
No 159
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=71.99 E-value=62 Score=34.20 Aligned_cols=101 Identities=15% Similarity=0.170 Sum_probs=60.5
Q ss_pred EEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHH
Q 041333 102 QIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMK 181 (513)
Q Consensus 102 iIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~ 181 (513)
++|..+.+ .++.+++++.+... .+++| |+... ++..+... + .....+.+...+...| -++++-.|++
T Consensus 26 llpi~gkp-li~~~l~~l~~~g~--~~iiv-vv~~~-~~~i~~~~----~---~~~~~~~~~~~~~~~G-t~~si~~al~ 92 (482)
T PRK14352 26 LHTLAGRS-MLGHVLHAAAGLAP--QHLVV-VVGHD-RERVAPAV----A---ELAPEVDIAVQDEQPG-TGHAVQCALE 92 (482)
T ss_pred eceeCCcc-HHHHHHHHHHhcCC--CcEEE-EECCC-HHHHHHHh----h---ccCCccEEEeCCCCCC-cHHHHHHHHH
Confidence 55665544 89999999887642 34444 33322 22222111 1 1122345554444444 6788888888
Q ss_pred hcccCCCcEEEEEcCCC-CCChHHHHHHHHHHhcC
Q 041333 182 RGYVKSCDFVVIFDADF-QPESDFLTRTIPFLVHN 215 (513)
Q Consensus 182 ~a~~~~~d~I~~lDaD~-~~~pd~L~~l~~~~~~~ 215 (513)
.......|.++++++|. .++++.+++++..++++
T Consensus 93 ~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~ 127 (482)
T PRK14352 93 ALPADFDGTVVVTAGDVPLLDGETLADLVATHTAE 127 (482)
T ss_pred HhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhc
Confidence 75211247899999998 57889999999877433
No 160
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=71.55 E-value=8.9 Score=40.05 Aligned_cols=93 Identities=16% Similarity=0.190 Sum_probs=65.9
Q ss_pred cEEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHH
Q 041333 98 MVLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALR 177 (513)
Q Consensus 98 ~VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln 177 (513)
..+|++-+|..++++...++.+-...|-+ +++ |+=+|..+..+++ .|++-|+.+.+++.++|+- +|+-
T Consensus 650 QFTvVmLTYERe~VLm~sLeRL~gLPYLn-Kvv--VVWNspk~P~ddl------~WPdigvPv~viR~~~NsL---NNRF 717 (907)
T KOG2264|consen 650 QFTVVMLTYEREAVLMGSLERLHGLPYLN-KVV--VVWNSPKDPPDDL------TWPDIGVPVEVIRVAENSL---NNRF 717 (907)
T ss_pred eEEEEEEEehHHHHHHHHHHHhhCCcccc-eEE--EEeCCCCCChhcc------cCcCCCCceEEEEcccccc---cccc
Confidence 68999999999999999999999988874 433 4445444444444 3777788898887665532 2333
Q ss_pred HHHHhcccCCCcEEEEEcCCCCCChHHH
Q 041333 178 EGMKRGYVKSCDFVVIFDADFQPESDFL 205 (513)
Q Consensus 178 ~gl~~a~~~~~d~I~~lDaD~~~~pd~L 205 (513)
.-.+.. ..|-|+-+|+|.-+--|-+
T Consensus 718 lPwd~I---ETEAvLS~DDDahLrhdEI 742 (907)
T KOG2264|consen 718 LPWDRI---ETEAVLSLDDDAHLRHDEI 742 (907)
T ss_pred cCchhh---hheeeeecccchhhhhhhe
Confidence 334556 8899999999976654433
No 161
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=70.26 E-value=42 Score=35.12 Aligned_cols=104 Identities=13% Similarity=0.152 Sum_probs=60.6
Q ss_pred EEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHH
Q 041333 102 QIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMK 181 (513)
Q Consensus 102 iIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~ 181 (513)
++|. +....++.+++++.+.. .++++| |..... +..+.. + .+.++.++..+...| -++++..+++
T Consensus 27 l~~i-~gkpli~~~l~~l~~~~--~~~iiv-v~~~~~-~~i~~~-------~--~~~~~~~v~~~~~~G-t~~al~~a~~ 91 (456)
T PRK14356 27 LQTL-LGEPMLRFVYRALRPLF--GDNVWT-VVGHRA-DMVRAA-------F--PDEDARFVLQEQQLG-TGHALQCAWP 91 (456)
T ss_pred eccc-CCCcHHHHHHHHHHhcC--CCcEEE-EECCCH-HHHHHh-------c--cccCceEEEcCCCCC-cHHHHHHHHH
Confidence 4444 34567888888877643 234434 443321 111111 1 123456666554445 4677777776
Q ss_pred hcccCCCcEEEEEcCCC-CCChHHHHHHHHHHhcCCCeeEE
Q 041333 182 RGYVKSCDFVVIFDADF-QPESDFLTRTIPFLVHNPQLALV 221 (513)
Q Consensus 182 ~a~~~~~d~I~~lDaD~-~~~pd~L~~l~~~~~~~~~v~~V 221 (513)
.....+.|.++++++|. .++++.+++++... .+.+..++
T Consensus 92 ~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~-~~~~~~l~ 131 (456)
T PRK14356 92 SLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEA-AGADLAFM 131 (456)
T ss_pred HHhhcCCCcEEEEeCCcccCCHHHHHHHHHHH-hcCCEEEE
Confidence 65222468999999998 67899999998876 33343333
No 162
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=69.90 E-value=64 Score=33.66 Aligned_cols=99 Identities=8% Similarity=0.094 Sum_probs=58.3
Q ss_pred EEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHH
Q 041333 102 QIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMK 181 (513)
Q Consensus 102 iIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~ 181 (513)
++|.-+ ...++.+++++.+... .+++| |+... ++..+... .+..++.++..+...| -+.++..+++
T Consensus 23 ll~v~g-kpli~~~l~~l~~~g~--~~iiv-vv~~~-~~~i~~~~--------~~~~~i~~v~~~~~~G-~~~sv~~~~~ 88 (450)
T PRK14360 23 LHPLGG-KSLVERVLDSCEELKP--DRRLV-IVGHQ-AEEVEQSL--------AHLPGLEFVEQQPQLG-TGHAVQQLLP 88 (450)
T ss_pred cCEECC-hhHHHHHHHHHHhCCC--CeEEE-EECCC-HHHHHHHh--------cccCCeEEEEeCCcCC-cHHHHHHHHH
Confidence 445544 4789999999887643 34444 33322 22222111 1122466665444444 5677777776
Q ss_pred hcccCCCcEEEEEcCCC-CCChHHHHHHHHHHhcC
Q 041333 182 RGYVKSCDFVVIFDADF-QPESDFLTRTIPFLVHN 215 (513)
Q Consensus 182 ~a~~~~~d~I~~lDaD~-~~~pd~L~~l~~~~~~~ 215 (513)
.... ..+.++++|+|. .+.++.++++++.++++
T Consensus 89 ~l~~-~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~ 122 (450)
T PRK14360 89 VLKG-FEGDLLVLNGDVPLLRPETLEALLNTHRSS 122 (450)
T ss_pred Hhhc-cCCcEEEEeCCccccCHHHHHHHHHHHHhc
Confidence 6511 245678899997 56889999998877443
No 163
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=69.76 E-value=64 Score=29.55 Aligned_cols=94 Identities=18% Similarity=0.225 Sum_probs=63.3
Q ss_pred CChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHHhcccC
Q 041333 107 NEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMKRGYVK 186 (513)
Q Consensus 107 ne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~~a~~~ 186 (513)
+....+..+++..++-.+ ++++ |+-+.. ..+ ..+. . ..+.+++++.+++-..|-+..+..|++.+
T Consensus 29 ~g~plv~~~~~~a~~a~~--~~vi--vV~g~~--~~~-~~~a----~-~~~~~~~~v~npd~~~Gls~Sl~ag~~a~--- 93 (199)
T COG2068 29 DGKPLVRASAETALSAGL--DRVI--VVTGHR--VAE-AVEA----L-LAQLGVTVVVNPDYAQGLSTSLKAGLRAA--- 93 (199)
T ss_pred CCCcHHHHHHHHHHhcCC--CeEE--EEeCcc--hhh-HHHh----h-hccCCeEEEeCcchhhhHhHHHHHHHHhc---
Confidence 445577888887776433 3443 343322 111 1111 1 23467888888876555899999999998
Q ss_pred CC--cEEEEEcCCCC-CChHHHHHHHHHHhcC
Q 041333 187 SC--DFVVIFDADFQ-PESDFLTRTIPFLVHN 215 (513)
Q Consensus 187 ~~--d~I~~lDaD~~-~~pd~L~~l~~~~~~~ 215 (513)
.+ +.++++=+|.- +.|+.+.+++..+..+
T Consensus 94 ~~~~~~v~~~lgDmP~V~~~t~~rl~~~~~~~ 125 (199)
T COG2068 94 DAEGDGVVLMLGDMPQVTPATVRRLIAAFRAR 125 (199)
T ss_pred ccCCCeEEEEeCCCCCCCHHHHHHHHHhcccc
Confidence 54 49999999964 7999999999998433
No 164
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=69.74 E-value=55 Score=34.62 Aligned_cols=99 Identities=13% Similarity=0.201 Sum_probs=59.8
Q ss_pred EEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHH
Q 041333 102 QIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMK 181 (513)
Q Consensus 102 iIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~ 181 (513)
++|.-+. ..+..+++++.+... ++++| |.... .+..+... .+.++.++..+...| .++++-.|++
T Consensus 29 llpi~gk-pli~~~l~~l~~~gi--~~ivv-v~~~~-~~~i~~~~---------~~~~i~~v~~~~~~G-t~~al~~~~~ 93 (481)
T PRK14358 29 LHPVAGR-PMVAWAVKAARDLGA--RKIVV-VTGHG-AEQVEAAL---------QGSGVAFARQEQQLG-TGDAFLSGAS 93 (481)
T ss_pred ecEECCe-eHHHHHHHHHHhCCC--CeEEE-EeCCC-HHHHHHHh---------ccCCcEEecCCCcCC-cHHHHHHHHH
Confidence 4555454 788889998887642 34444 44332 22222111 134567776555555 6888888877
Q ss_pred hcccCCCcEEEEEcCCC-CCChHHHHHHHHHHhcCC
Q 041333 182 RGYVKSCDFVVIFDADF-QPESDFLTRTIPFLVHNP 216 (513)
Q Consensus 182 ~a~~~~~d~I~~lDaD~-~~~pd~L~~l~~~~~~~~ 216 (513)
.....+.+ ++++++|. .+.++.+++++....+++
T Consensus 94 ~l~~~~~~-~lV~~gD~P~i~~~~l~~ll~~~~~~~ 128 (481)
T PRK14358 94 ALTEGDAD-ILVLYGDTPLLRPDTLRALVADHRAQG 128 (481)
T ss_pred HhhCCCCc-EEEEeCCeeccCHHHHHHHHHHHHhcC
Confidence 65211235 67799998 668888999988774443
No 165
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=68.94 E-value=39 Score=32.71 Aligned_cols=21 Identities=33% Similarity=0.472 Sum_probs=16.4
Q ss_pred CCcEEEEEcCCCCC--ChHHHHH
Q 041333 187 SCDFVVIFDADFQP--ESDFLTR 207 (513)
Q Consensus 187 ~~d~I~~lDaD~~~--~pd~L~~ 207 (513)
..|=|+++|+|+++ +|+.+-+
T Consensus 90 sFeevllLDaD~vpl~~p~~lF~ 112 (271)
T PF11051_consen 90 SFEEVLLLDADNVPLVDPEKLFE 112 (271)
T ss_pred CcceEEEEcCCcccccCHHHHhc
Confidence 88999999999988 5554433
No 166
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=68.55 E-value=63 Score=33.68 Aligned_cols=94 Identities=15% Similarity=0.065 Sum_probs=58.2
Q ss_pred EEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHH
Q 041333 102 QIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMK 181 (513)
Q Consensus 102 iIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~ 181 (513)
++|.-+. ..+..+++++.+.. +++.| +.+. .++. +.+ +.. .++.++..+...| -++++..+++
T Consensus 22 l~~v~gk-pli~~~l~~l~~~~---~~i~v-v~~~-~~~~---i~~-----~~~--~~~~~~~~~~~~g-~~~ai~~a~~ 84 (448)
T PRK14357 22 LHKISGK-PMINWVIDTAKKVA---QKVGV-VLGH-EAEL---VKK-----LLP--EWVKIFLQEEQLG-TAHAVMCARD 84 (448)
T ss_pred eeEECCe-eHHHHHHHHHHhcC---CcEEE-EeCC-CHHH---HHH-----hcc--cccEEEecCCCCC-hHHHHHHHHH
Confidence 5566554 78888999888752 34444 3332 1211 211 111 1344554544445 5788888887
Q ss_pred hcccCCCcEEEEEcCCC-CCChHHHHHHHHHHhc
Q 041333 182 RGYVKSCDFVVIFDADF-QPESDFLTRTIPFLVH 214 (513)
Q Consensus 182 ~a~~~~~d~I~~lDaD~-~~~pd~L~~l~~~~~~ 214 (513)
... +.|.++++++|. ...++.+++++..+++
T Consensus 85 ~l~--~~~~vlv~~gD~p~i~~~~i~~l~~~~~~ 116 (448)
T PRK14357 85 FIE--PGDDLLILYGDVPLISENTLKRLIEEHNR 116 (448)
T ss_pred hcC--cCCeEEEEeCCcccCCHHHHHHHHHHHHh
Confidence 761 358999999997 5678888998887743
No 167
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=67.92 E-value=88 Score=27.72 Aligned_cols=91 Identities=20% Similarity=0.185 Sum_probs=54.6
Q ss_pred EEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCC--CCCCChhHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHH
Q 041333 131 IQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDN--RKGYKAGALREGMKRGYVKSCDFVVIFDADFQPESDFLTRT 208 (513)
Q Consensus 131 IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~--~~g~Ka~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l 208 (513)
|+|-|+ |...+..+|... ++.+.+.++... +.--...-+-..++.+ +.-+.++.+|+--......=++.
T Consensus 3 IlvTDG--D~~A~ravE~aa-----~~iGgRCIS~S~GNPT~lsG~elV~lIk~a--~~DPV~VMfDD~G~~g~G~GE~A 73 (180)
T PF14097_consen 3 ILVTDG--DEYAKRAVEIAA-----KNIGGRCISQSAGNPTPLSGEELVELIKQA--PHDPVLVMFDDKGFIGEGPGEQA 73 (180)
T ss_pred EEEECC--hHHHHHHHHHHH-----HHhCcEEEeccCCCCCcCCHHHHHHHHHhC--CCCCEEEEEeCCCCCCCCccHHH
Confidence 436666 555555555333 345666776543 2222334566777777 25566777777767666666777
Q ss_pred HHHHhcCCCeeEEEeeEEEecC
Q 041333 209 IPFLVHNPQLALVQARWEFVNA 230 (513)
Q Consensus 209 ~~~~~~~~~v~~V~~~~~~~n~ 230 (513)
+.+...+|++.+.+.--...|.
T Consensus 74 l~~v~~h~~IeVLG~iAVASnT 95 (180)
T PF14097_consen 74 LEYVANHPDIEVLGAIAVASNT 95 (180)
T ss_pred HHHHHcCCCceEEEEEEEEecC
Confidence 7777788988766555444443
No 168
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=67.45 E-value=51 Score=31.38 Aligned_cols=108 Identities=14% Similarity=0.156 Sum_probs=60.8
Q ss_pred CCCcEEEEEeccCChHHHHHHHHHHHcC-CCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCCh
Q 041333 95 SYPMVLVQIPMFNEREVYQLSIGAACGL-SWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKA 173 (513)
Q Consensus 95 ~~P~VsIiIP~yne~~~l~~~l~sl~~q-~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka 173 (513)
..|+. .+|.-+. ..|...|+++.+. .. .++.| |+....+ ......+.. ....+..+.+...++..| -+
T Consensus 20 ~~PK~--llpv~g~-plI~~~l~~l~~~~gi--~~i~i-v~~~~~~-~i~~~l~~~---~~~~~~~i~~~~~~~~~G-t~ 88 (257)
T cd06428 20 DVPKP--LFPVAGK-PMIHHHIEACAKVPDL--KEVLL-IGFYPES-VFSDFISDA---QQEFNVPIRYLQEYKPLG-TA 88 (257)
T ss_pred CCCcc--cCeECCe-eHHHHHHHHHHhcCCC--cEEEE-EecCCHH-HHHHHHHhc---ccccCceEEEecCCccCC-cH
Confidence 34553 5677666 7889999998874 32 23433 4443222 222222111 011245566655544555 57
Q ss_pred hHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhc
Q 041333 174 GALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVH 214 (513)
Q Consensus 174 ~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~ 214 (513)
+++..+.+.......|.++++.+|...+.| +..++....+
T Consensus 89 ~al~~a~~~l~~~~~~~~lv~~gD~~~~~d-l~~~~~~h~~ 128 (257)
T cd06428 89 GGLYHFRDQILAGNPSAFFVLNADVCCDFP-LQELLEFHKK 128 (257)
T ss_pred HHHHHHHHHhhccCCCCEEEEcCCeecCCC-HHHHHHHHHH
Confidence 777776665411135778889999887655 6777776633
No 169
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=66.81 E-value=57 Score=33.30 Aligned_cols=90 Identities=11% Similarity=0.179 Sum_probs=53.2
Q ss_pred CChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCcc-EEEEEcCCCCCCChhHHHHHHHhccc
Q 041333 107 NEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGIN-IKYEVRDNRKGYKAGALREGMKRGYV 185 (513)
Q Consensus 107 ne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~-v~~~~~~~~~g~Ka~aln~gl~~a~~ 185 (513)
+....++.+++.+.+...- ++++| |+++...+ ..+... . +.+ +.++.. ..+ ...++..|++..
T Consensus 31 ~GkPll~~tl~~l~~~~~i-~~IvV-Vv~~~~~~----~~~~~~----~-~~~~v~~v~g--G~~-r~~SV~~gL~~l-- 94 (378)
T PRK09382 31 GGKPLWLHVLENLSSAPAF-KEIVV-VIHPDDIA----YMKKAL----P-EIKFVTLVTG--GAT-RQESVRNALEAL-- 94 (378)
T ss_pred CCeeHHHHHHHHHhcCCCC-CeEEE-EeChHHHH----HHHHhc----c-cCCeEEEeCC--Cch-HHHHHHHHHHhc--
Confidence 4567888999988875321 34444 44332211 111111 1 111 333311 111 356678888887
Q ss_pred CCCcEEEEEcCCC-CCChHHHHHHHHHHh
Q 041333 186 KSCDFVVIFDADF-QPESDFLTRTIPFLV 213 (513)
Q Consensus 186 ~~~d~I~~lDaD~-~~~pd~L~~l~~~~~ 213 (513)
+.|++++.|+|. .++++.+++++..+.
T Consensus 95 -~~d~VLVhdadrPfv~~e~I~~li~~~~ 122 (378)
T PRK09382 95 -DSEYVLIHDAARPFVPKELIDRLIEALD 122 (378)
T ss_pred -CCCeEEEeeccccCCCHHHHHHHHHHhh
Confidence 669999999994 568999999998873
No 170
>PF04724 Glyco_transf_17: Glycosyltransferase family 17; InterPro: IPR006813 This family represents beta-1,4-mannosyl-glycoprotein beta-1,4-N-acetylglucosaminyltransferase (2.4.1.144 from EC). This enzyme transfers the bisecting GlcNAc to the core mannose of complex N-glycans. The addition of this residue is regulated during development and has functional consequences for receptor signalling, cell adhesion, and tumour progression [, ].; GO: 0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0016020 membrane
Probab=66.76 E-value=1.1e+02 Score=30.96 Aligned_cols=123 Identities=18% Similarity=0.142 Sum_probs=62.1
Q ss_pred cEEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCc-hhHHH-HHHHHHHHhhccCccEEEEEcCCC--CCC--
Q 041333 98 MVLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTD-LTIKD-MVELECQRWASKGINIKYEVRDNR--KGY-- 171 (513)
Q Consensus 98 ~VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D-~t~~~-l~~~~~~~~~~~~~~v~~~~~~~~--~g~-- 171 (513)
+|-=.+...||-+.++--+..+-.. ...-|+|.-+.|- +..+. ..+...++++.-..++.|+..+.. .|.
T Consensus 80 rV~D~~~f~~ElDlLeiRl~eL~~v----VD~FVIvEs~~Tf~G~~KpL~f~~~~~~f~~~~~KIiy~~l~~~~~~g~~~ 155 (356)
T PF04724_consen 80 RVYDCFLFNNELDLLEIRLNELYDV----VDYFVIVESNRTFTGKPKPLYFAENKERFAFFHDKIIYVTLDDPPEKGRKD 155 (356)
T ss_pred eEEEEEEeCChHHHHHHHHHHhhCc----ceEEEEEEECCCcCCCCCCccHHHHHHHHHhhhcceEEEEecCcCCCCCCc
Confidence 3444455567778888777766532 2223334444321 11110 111122333333456777755432 121
Q ss_pred -------ChhHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEEEeeE
Q 041333 172 -------KAGALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALVQARW 225 (513)
Q Consensus 172 -------Ka~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V~~~~ 225 (513)
...+++...+.+....+|+|++-|.|.+|.|+.|+.+-.. ...|..--...+.
T Consensus 156 ~w~~E~~qR~~l~~l~~~~~~~~dDliivSDvDEIP~p~~l~~Lr~c-d~~p~~l~l~lr~ 215 (356)
T PF04724_consen 156 PWDRENYQRNALNGLLRLAGIQDDDLIIVSDVDEIPSPETLKFLRWC-DGFPEPLHLRLRF 215 (356)
T ss_pred hhHHHHHHHHHHHHHhhhcCCCCCCEEEEcCcccccCHHHHHHHHhc-CCCCCeeEEEeec
Confidence 1122322222222358999999999999999998876432 2334443333343
No 171
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=65.20 E-value=79 Score=28.53 Aligned_cols=51 Identities=18% Similarity=0.135 Sum_probs=37.7
Q ss_pred cEEEEEcCCCCCCChhHHHHHHHhcccCCCcEEEEEcCCCC-CChHHHHHHHHHH
Q 041333 159 NIKYEVRDNRKGYKAGALREGMKRGYVKSCDFVVIFDADFQ-PESDFLTRTIPFL 212 (513)
Q Consensus 159 ~v~~~~~~~~~g~Ka~aln~gl~~a~~~~~d~I~~lDaD~~-~~pd~L~~l~~~~ 212 (513)
++.++.++.. | ...++..|++... .+++.++++-+|.- ++++.+++++..+
T Consensus 65 ~v~~i~~~~~-G-~~~si~~al~~~~-~~~~~vlv~~~D~P~l~~~~i~~l~~~~ 116 (195)
T TIGR03552 65 GAPVLRDPGP-G-LNNALNAALAEAR-EPGGAVLILMADLPLLTPRELKRLLAAA 116 (195)
T ss_pred CCEEEecCCC-C-HHHHHHHHHHHhh-ccCCeEEEEeCCCCCCCHHHHHHHHHhc
Confidence 4556655432 3 6788888888752 24579999999975 5999999998877
No 172
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=64.71 E-value=82 Score=32.92 Aligned_cols=95 Identities=11% Similarity=0.150 Sum_probs=57.6
Q ss_pred EEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHH
Q 041333 102 QIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMK 181 (513)
Q Consensus 102 iIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~ 181 (513)
++|.-+. ..++.+++++.+... ++++| |.... ++..+.. + +.++.++..+...| -++++..+++
T Consensus 24 ll~i~Gk-pli~~~l~~l~~~gi--~~iiv-vv~~~-~~~i~~~-------~---~~~~~~~~~~~~~g-~~~al~~a~~ 87 (458)
T PRK14354 24 LHKVCGK-PMVEHVVDSVKKAGI--DKIVT-VVGHG-AEEVKEV-------L---GDRSEFALQEEQLG-TGHAVMQAEE 87 (458)
T ss_pred hCEeCCc-cHHHHHHHHHHhCCC--CeEEE-EeCCC-HHHHHHH-------h---cCCcEEEEcCCCCC-HHHHHHHHHH
Confidence 3455554 788999999887542 34444 33322 2222211 1 11244554444444 5677888877
Q ss_pred hcccCCCcEEEEEcCCC-CCChHHHHHHHHHHh
Q 041333 182 RGYVKSCDFVVIFDADF-QPESDFLTRTIPFLV 213 (513)
Q Consensus 182 ~a~~~~~d~I~~lDaD~-~~~pd~L~~l~~~~~ 213 (513)
... ...|.++++++|. ..+++.++++++.++
T Consensus 88 ~l~-~~~d~vlv~~~D~p~i~~~~l~~li~~~~ 119 (458)
T PRK14354 88 FLA-DKEGTTLVICGDTPLITAETLKNLIDFHE 119 (458)
T ss_pred Hhc-ccCCeEEEEECCccccCHHHHHHHHHHHH
Confidence 651 1147899999997 678999999998773
No 173
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=63.60 E-value=1.3e+02 Score=28.14 Aligned_cols=103 Identities=16% Similarity=0.127 Sum_probs=56.0
Q ss_pred CCcEEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhH
Q 041333 96 YPMVLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGA 175 (513)
Q Consensus 96 ~P~VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~a 175 (513)
.|+. .+|.- ....+..+++++.+... .+++| |+.....+..... .......+.++.+...+...| -+++
T Consensus 21 ~pK~--llpv~-~~pli~~~l~~l~~~gi--~~i~v-v~~~~~~~~~~~~----l~~~~~~~~~i~~~~~~~~~G-~~~a 89 (240)
T cd02538 21 VSKQ--LLPVY-DKPMIYYPLSTLMLAGI--REILI-ISTPEDLPLFKEL----LGDGSDLGIRITYAVQPKPGG-LAQA 89 (240)
T ss_pred CCce--eeEEC-CEEhHHHHHHHHHHCCC--CEEEE-EeCcchHHHHHHH----HhcccccCceEEEeeCCCCCC-HHHH
Confidence 4543 34554 45688888888886542 23433 4332211111111 111111234566655444444 6788
Q ss_pred HHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHH
Q 041333 176 LREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFL 212 (513)
Q Consensus 176 ln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~ 212 (513)
+..+.+.. +.|-++++.+|....+.-+.+++...
T Consensus 90 l~~a~~~~---~~~~~lv~~gD~~~~~~~~~~~~~~~ 123 (240)
T cd02538 90 FIIGEEFI---GDDPVCLILGDNIFYGQGLSPILQRA 123 (240)
T ss_pred HHHHHHhc---CCCCEEEEECCEEEccHHHHHHHHHH
Confidence 88888876 55556666888766555567777655
No 174
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=62.78 E-value=89 Score=29.01 Aligned_cols=95 Identities=17% Similarity=0.203 Sum_probs=55.3
Q ss_pred CChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHHhcccC
Q 041333 107 NEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMKRGYVK 186 (513)
Q Consensus 107 ne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~~a~~~ 186 (513)
++...+..+++.+.+.... ++++| |.++.. .+.+.+... ....++..... ..+ ...++..|++.. .
T Consensus 29 ~g~pli~~~l~~l~~~~~~-~~ivv-v~~~~~---~~~~~~~~~----~~~~~~~~~~~--~~~-~~~sv~~~l~~~--~ 94 (227)
T PRK00155 29 GGKPILEHTLEAFLAHPRI-DEIIV-VVPPDD---RPDFAELLL----AKDPKVTVVAG--GAE-RQDSVLNGLQAL--P 94 (227)
T ss_pred CCEEHHHHHHHHHHcCCCC-CEEEE-EeChHH---HHHHHHHhh----ccCCceEEeCC--cch-HHHHHHHHHHhC--C
Confidence 4566888899988764322 34444 444321 122222111 11122333321 122 467777787764 2
Q ss_pred CCcEEEEEcCCCC-CChHHHHHHHHHHhcC
Q 041333 187 SCDFVVIFDADFQ-PESDFLTRTIPFLVHN 215 (513)
Q Consensus 187 ~~d~I~~lDaD~~-~~pd~L~~l~~~~~~~ 215 (513)
+.|.++++|+|.- ++++.+++++..+..+
T Consensus 95 ~~d~vlv~~~D~P~i~~~~i~~li~~~~~~ 124 (227)
T PRK00155 95 DDDWVLVHDAARPFLTPDDIDRLIEAAEET 124 (227)
T ss_pred CCCEEEEccCccCCCCHHHHHHHHHHHhhC
Confidence 5789999999964 6999999999987444
No 175
>PF03213 Pox_P35: Poxvirus P35 protein; InterPro: IPR004900 The Poxvirus P35 protein is an immunodominant envelope protein. It binds to heparan sulphate on the cell surface to provide virion attachment to target cell [].; GO: 0019031 viral envelope
Probab=62.35 E-value=80 Score=30.95 Aligned_cols=44 Identities=16% Similarity=0.279 Sum_probs=36.9
Q ss_pred CCCcEEEEEcCCCCC-ChHHHHHHHHHHhcCCCeeEEEeeEEEecC
Q 041333 186 KSCDFVVIFDADFQP-ESDFLTRTIPFLVHNPQLALVQARWEFVNA 230 (513)
Q Consensus 186 ~~~d~I~~lDaD~~~-~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~ 230 (513)
+..+|++++++|..+ ++..+..++..| .+.+++++|-+-...|.
T Consensus 117 ~~~~yivVvEddnT~~~~~~l~~~I~aM-~~k~idilQLre~~~~~ 161 (325)
T PF03213_consen 117 PEDKYIVVVEDDNTLRDITTLHPIIKAM-KKKNIDILQLRETYHNS 161 (325)
T ss_pred CCCCeEEEEeCCCcccccHHHHHHHHHH-HHcCceEEEEehhhhcc
Confidence 478999999999555 789999999999 67899999998766543
No 176
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=62.32 E-value=57 Score=30.30 Aligned_cols=94 Identities=15% Similarity=0.180 Sum_probs=56.7
Q ss_pred CCcEEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCC--CCCCCh
Q 041333 96 YPMVLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDN--RKGYKA 173 (513)
Q Consensus 96 ~P~VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~--~~g~Ka 173 (513)
.|+- .+|.-+ ...++.+++++.+... .++.| |+.. ..+...... + .+.++.++..++ ..| -+
T Consensus 19 ~pK~--l~~~~g-~~li~~~l~~l~~~gi--~~i~v-v~~~-~~~~~~~~~----~----~~~~~~~~~~~~~~~~g-~~ 82 (229)
T cd02523 19 RPKC--LLEING-KPLLERQIETLKEAGI--DDIVI-VTGY-KKEQIEELL----K----KYPNIKFVYNPDYAETN-NI 82 (229)
T ss_pred CCce--eeeECC-EEHHHHHHHHHHHCCC--ceEEE-Eecc-CHHHHHHHH----h----ccCCeEEEeCcchhhhC-cH
Confidence 4543 445544 4789999999887643 34444 4433 222222121 1 124566665543 334 67
Q ss_pred hHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHH
Q 041333 174 GALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTI 209 (513)
Q Consensus 174 ~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~ 209 (513)
+++..+.+.. .+.++++++|...+++.++.+.
T Consensus 83 ~s~~~~~~~~----~~~~lv~~~D~~~~~~~~~~~~ 114 (229)
T cd02523 83 YSLYLARDFL----DEDFLLLEGDVVFDPSILERLL 114 (229)
T ss_pred HHHHHHHHHc----CCCEEEEeCCEecCHHHHHHHH
Confidence 8888888776 3678889999988888777654
No 177
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=62.05 E-value=1e+02 Score=29.19 Aligned_cols=37 Identities=14% Similarity=0.123 Sum_probs=29.5
Q ss_pred ChhHHHHHHHhcccCCC-cEEEEEcCCCCCChHHHHHHHHHH
Q 041333 172 KAGALREGMKRGYVKSC-DFVVIFDADFQPESDFLTRTIPFL 212 (513)
Q Consensus 172 Ka~aln~gl~~a~~~~~-d~I~~lDaD~~~~pd~L~~l~~~~ 212 (513)
.++++-.+.+.. .. |.++++++|.+.+.|. ..+++..
T Consensus 104 t~~al~~a~~~~---~~~~~~lv~~gD~i~~~dl-~~ll~~h 141 (253)
T cd02524 104 TGGRLKRVRRYL---GDDETFMLTYGDGVSDVNI-NALIEFH 141 (253)
T ss_pred cHHHHHHHHHhc---CCCCeEEEEcCCEEECCCH-HHHHHHH
Confidence 477888888876 54 8899999999888877 7777755
No 178
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=61.33 E-value=99 Score=28.33 Aligned_cols=98 Identities=17% Similarity=0.225 Sum_probs=53.7
Q ss_pred EEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHH
Q 041333 102 QIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMK 181 (513)
Q Consensus 102 iIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~ 181 (513)
++|..|. ..+..+++.+.+... ++++| |.... .+..+.. ..+....+.++.++..+...| -++++..+.+
T Consensus 23 ll~~~g~-pli~~~l~~l~~~~~--~~iiv-v~~~~-~~~i~~~----~~~~~~~~~~i~~~~~~~~~g-~~~~l~~~~~ 92 (220)
T cd06426 23 MLKVGGK-PILETIIDRFIAQGF--RNFYI-SVNYL-AEMIEDY----FGDGSKFGVNISYVREDKPLG-TAGALSLLPE 92 (220)
T ss_pred cCeECCc-chHHHHHHHHHHCCC--cEEEE-ECccC-HHHHHHH----HCCccccCccEEEEECCCCCc-chHHHHHHHh
Confidence 4555565 588999998887643 24444 43322 1111111 111111244566665544444 4667654443
Q ss_pred hcccCCCcEEEEEcCCCCCChHHHHHHHHHHhc
Q 041333 182 RGYVKSCDFVVIFDADFQPESDFLTRTIPFLVH 214 (513)
Q Consensus 182 ~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~ 214 (513)
. ..|.++++.+|...+.+ +..+++.+..
T Consensus 93 ~----~~~~~lv~~~D~i~~~~-~~~l~~~~~~ 120 (220)
T cd06426 93 K----PTDPFLVMNGDILTNLN-YEHLLDFHKE 120 (220)
T ss_pred h----CCCCEEEEcCCEeeccC-HHHHHHHHHh
Confidence 2 36778888999866554 5677776643
No 179
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=60.24 E-value=91 Score=28.65 Aligned_cols=94 Identities=16% Similarity=0.215 Sum_probs=54.4
Q ss_pred CChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHHhcccC
Q 041333 107 NEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMKRGYVK 186 (513)
Q Consensus 107 ne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~~a~~~ 186 (513)
+....++.+++.+.+... .++++| |.++...+..+.. + .....+.++... .+ ...++..|++.. .
T Consensus 25 ~gkpll~~~l~~l~~~~~-~~~ivV-v~~~~~~~~~~~~-------~-~~~~~~~~~~~~--~~-~~~sl~~~l~~~--~ 89 (217)
T TIGR00453 25 GGRPLLEHTLDAFLAHPA-IDEVVV-VVSPEDQEFFQKY-------L-VARAVPKIVAGG--DT-RQDSVRNGLKAL--K 89 (217)
T ss_pred CCeEHHHHHHHHHhcCCC-CCEEEE-EEChHHHHHHHHH-------h-hcCCcEEEeCCC--ch-HHHHHHHHHHhC--C
Confidence 456788999998886532 234444 4433211111111 1 111123333211 12 346677777765 1
Q ss_pred CCcEEEEEcCCC-CCChHHHHHHHHHHhcC
Q 041333 187 SCDFVVIFDADF-QPESDFLTRTIPFLVHN 215 (513)
Q Consensus 187 ~~d~I~~lDaD~-~~~pd~L~~l~~~~~~~ 215 (513)
+.|+++++|+|. .++++.+++++..+.++
T Consensus 90 ~~d~vlv~~~D~P~i~~~~i~~li~~~~~~ 119 (217)
T TIGR00453 90 DAEWVLVHDAARPFVPKELLDRLLEALRKA 119 (217)
T ss_pred CCCEEEEccCccCCCCHHHHHHHHHHHhhC
Confidence 478999999997 56999999999987444
No 180
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=60.05 E-value=99 Score=29.12 Aligned_cols=96 Identities=14% Similarity=0.159 Sum_probs=60.3
Q ss_pred cCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHHhccc
Q 041333 106 FNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMKRGYV 185 (513)
Q Consensus 106 yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~~a~~ 185 (513)
++....++.+++.++... ..+-+|+|+....|+..+...+ ...+.++.++.... ........|++....
T Consensus 29 l~g~pll~~tl~~f~~~~--~i~~Ivvv~~~~~~~~~~~~~~------~~~~~~v~~v~GG~---~R~~SV~~gL~~~~~ 97 (230)
T COG1211 29 LGGRPLLEHTLEAFLESP--AIDEIVVVVSPEDDPYFEKLPK------LSADKRVEVVKGGA---TRQESVYNGLQALSK 97 (230)
T ss_pred ECCEEehHHHHHHHHhCc--CCCeEEEEEChhhhHHHHHhhh------hccCCeEEEecCCc---cHHHHHHHHHHHhhc
Confidence 355668899999887653 3333444666656666555442 12345566653211 134566778877722
Q ss_pred CCCcEEEEEcCC-CCCChHHHHHHHHHH
Q 041333 186 KSCDFVVIFDAD-FQPESDFLTRTIPFL 212 (513)
Q Consensus 186 ~~~d~I~~lDaD-~~~~pd~L~~l~~~~ 212 (513)
...++|++.|+= -..+++.+++++...
T Consensus 98 ~~~~~VlvHDaaRPf~~~~~i~~li~~~ 125 (230)
T COG1211 98 YDSDWVLVHDAARPFLTPKLIKRLIELA 125 (230)
T ss_pred cCCCEEEEeccccCCCCHHHHHHHHHhh
Confidence 248999999997 666899999999443
No 181
>KOG0916 consensus 1,3-beta-glucan synthase/callose synthase catalytic subunit [Cell wall/membrane/envelope biogenesis]
Probab=58.69 E-value=1.9e+02 Score=34.46 Aligned_cols=138 Identities=12% Similarity=0.042 Sum_probs=75.4
Q ss_pred CChhHHHHHHHhcccCCCcEEEEEcCCCC-CChHH--HHHHHHHHhcCC----CeeEEEeeEEEecCCCchHHHHHHhhh
Q 041333 171 YKAGALREGMKRGYVKSCDFVVIFDADFQ-PESDF--LTRTIPFLVHNP----QLALVQARWEFVNADECLMTRLQEMSL 243 (513)
Q Consensus 171 ~Ka~aln~gl~~a~~~~~d~I~~lDaD~~-~~pd~--L~~l~~~~~~~~----~v~~V~~~~~~~n~~~~~~~~~~~~~~ 243 (513)
||..|-|.++-.. +||++-.+|+.-- .-.++ ++.+++.|++.. .+.+++.+-.....+.+.+..+.+..-
T Consensus 1051 GKpeNQNhaiiFt---RGE~iQtIDmNQDnYlEE~lKmRnlL~EF~~~~~g~r~ptIlG~RE~IFt~svssLa~fms~qE 1127 (1679)
T KOG0916|consen 1051 GKPENQNHAIIFT---RGEAIQTIDMNQDNYLEEALKMRNLLQEFEELHLGIRPPTILGAREHIFTGSVSSLAWFMSGQE 1127 (1679)
T ss_pred CCCcccCceeeee---cchhhheecccchHHHHHHHHHHHHHHHHHhhcCCCCCCceeeehhheecCCchHHHHHHccCc
Confidence 6999999999998 9999999999621 12222 234556664333 456666665544443333333221110
Q ss_pred cchhhHHhhhcccCCCccccccceeeeeHHHHHHcCCCCCC----CccchHHHHHHHhhCCCeEEEeccccc
Q 041333 244 DYHFTVEQEVGSSTHAFFGFNGTAGVWRIAAVNEAGGWKDR----TTVEDMDLAVRASLKGWKFLYLGTVKV 311 (513)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~~gg~~~~----~~~ED~~l~~rl~~~G~~i~~~~~~~~ 311 (513)
..+-...++.-...+++-.--|+--++.|-....=||-... ++.||..-++....+|.++..+.-..|
T Consensus 1128 qSFvTlgqR~LA~p~~vr~HYGHPD~~drif~~TRGGvSKAsk~inlsEDIfAG~n~tlRgG~itH~EYiQv 1199 (1679)
T KOG0916|consen 1128 QSFVTLGQRTLANPGGVRLHYGHPDVFDRIFHITRGGVSKASKGINLSEDIFAGFNATLRGGNITHHEYIQV 1199 (1679)
T ss_pred cchhhHHHHHhccccceeeecCCCcHhhhhhhhccccchHhhcccccchHhhhhhhHHhhCCCcccceeeec
Confidence 11111111111111111111144444444333344665432 489999999999999999877765444
No 182
>PF03360 Glyco_transf_43: Glycosyltransferase family 43; InterPro: IPR005027 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 43 GT43 from CAZY comprises enzymes with only one known activities; beta-glucuronyltransferase(2.4.1 from EC);.; GO: 0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, 0016020 membrane; PDB: 2D0J_B 3CU0_A 1FGG_B 1KWS_B 1V84_B 1V83_B 1V82_A.
Probab=57.56 E-value=15 Score=34.02 Aligned_cols=35 Identities=9% Similarity=-0.010 Sum_probs=24.4
Q ss_pred hhHHHHHHHhcc---c-CCCcEEEEEcCCCCCChHHHHH
Q 041333 173 AGALREGMKRGY---V-KSCDFVVIFDADFQPESDFLTR 207 (513)
Q Consensus 173 a~aln~gl~~a~---~-~~~d~I~~lDaD~~~~pd~L~~ 207 (513)
...+|.|++... . ...-+|.|.|+|...+...+++
T Consensus 59 ~~qRn~AL~~ir~~~~~~~~GVVyFaDDdNtYdl~LF~e 97 (207)
T PF03360_consen 59 VHQRNAALRWIRNNANHRLDGVVYFADDDNTYDLRLFDE 97 (207)
T ss_dssp HHHHHHHHHHHHSTTTSSS-EEEEE--TTSEE-HHHHHH
T ss_pred HHHHHHHHHHHHhcccCCCCcEEEECCCCCeeeHHHHHH
Confidence 457899999875 2 3456788999999999888877
No 183
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=57.52 E-value=1.1e+02 Score=28.15 Aligned_cols=97 Identities=16% Similarity=0.218 Sum_probs=51.8
Q ss_pred EEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhh--cc-CccEEEEEcCCCCCCChhHHHH
Q 041333 102 QIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWA--SK-GINIKYEVRDNRKGYKAGALRE 178 (513)
Q Consensus 102 iIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~--~~-~~~v~~~~~~~~~g~Ka~aln~ 178 (513)
++|.-|. ..+..+++.+.+.. -.+++| |+.....+..+.. .+++. .. +..+.+.......| -++++..
T Consensus 25 Llpv~g~-pli~~~l~~l~~~g--~~~iiv-v~~~~~~~~i~~~----l~~~~~~~~~~~~~~~~~~~~~~g-t~~al~~ 95 (214)
T cd04198 25 LLPVANK-PMIWYPLDWLEKAG--FEDVIV-VVPEEEQAEISTY----LRSFPLNLKQKLDEVTIVLDEDMG-TADSLRH 95 (214)
T ss_pred cCEECCe-eHHHHHHHHHHHCC--CCeEEE-EECHHHHHHHHHH----HHhcccccCcceeEEEecCCCCcC-hHHHHHH
Confidence 5666565 68888998888743 234544 4432111112222 22210 11 12233333333444 6888888
Q ss_pred HHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHH
Q 041333 179 GMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFL 212 (513)
Q Consensus 179 gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~ 212 (513)
+.+.. +.+ ++++.+|.+.+.+ +..++..+
T Consensus 96 ~~~~i---~~d-~lv~~~D~i~~~~-l~~~l~~h 124 (214)
T cd04198 96 IRKKI---KKD-FLVLSCDLITDLP-LIELVDLH 124 (214)
T ss_pred HHhhc---CCC-EEEEeCccccccC-HHHHHHHH
Confidence 88776 555 6778899665544 45666655
No 184
>PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function. The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.
Probab=56.08 E-value=73 Score=30.68 Aligned_cols=114 Identities=15% Similarity=0.179 Sum_probs=59.9
Q ss_pred EEEEE-eccC-ChH--HHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcC--------
Q 041333 99 VLVQI-PMFN-ERE--VYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRD-------- 166 (513)
Q Consensus 99 VsIiI-P~yn-e~~--~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~-------- 166 (513)
++|.+ |.|. |++ .+.+-|+.-..+. .+.+. +-|.+.++....+++. |.+.| .+.+..-+
T Consensus 3 ~~vCv~pl~~~~~~~~~l~e~ie~~~~~G--~~~~~--~Y~~~~~~~~~~vL~~----Y~~~g-~v~~~~w~~~~~~~~~ 73 (285)
T PF01697_consen 3 FVVCVSPLFGNEDDWLQLIEWIEYHRLLG--VDHFY--FYDNSSSPSVRKVLKE----YERSG-YVEVIPWPLRPKFPDF 73 (285)
T ss_pred EEEEccchhcccccHHHHHHHHHHHHHhC--CCEEE--EEEccCCHHHHHhHHH----HhhcC-eEEEEEcccccccCCc
Confidence 45555 6666 543 6777777666663 23444 4444444444545543 43333 45554432
Q ss_pred -----CCCC-----CChhHHHHHHHhcccCCCcEEEEEcCCCCCChH----HHHHHHHHHhcCC--CeeEEE
Q 041333 167 -----NRKG-----YKAGALREGMKRGYVKSCDFVVIFDADFQPESD----FLTRTIPFLVHNP--QLALVQ 222 (513)
Q Consensus 167 -----~~~g-----~Ka~aln~gl~~a~~~~~d~I~~lDaD~~~~pd----~L~~l~~~~~~~~--~v~~V~ 222 (513)
+.++ +...|.|..+... ....+|++++|-|..+-|. ..+.+...++..+ .++.++
T Consensus 74 ~~~~~~~~~~~~~~~q~~a~~DCl~r~-~~~~~~v~f~DiDE~lvP~~~~~~~~~~~~~l~~~~~~~~~~~~ 144 (285)
T PF01697_consen 74 PSPFPDPNSSVERRGQIAAYNDCLLRY-RYRAKWVAFIDIDEFLVPTNAPTYPEEFEDLLREFPNISAGAYS 144 (285)
T ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHh-hhhceEEEEeccccEEEeccccchhhHHHHHHhhccccceEEEE
Confidence 0111 2345666666554 2478899999999665332 3555555553333 344443
No 185
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=55.65 E-value=80 Score=32.08 Aligned_cols=40 Identities=10% Similarity=0.229 Sum_probs=33.6
Q ss_pred CChhHHHHHHHhcccCCCcEEEEEcCCC-CCChHHHHHHHHHHh
Q 041333 171 YKAGALREGMKRGYVKSCDFVVIFDADF-QPESDFLTRTIPFLV 213 (513)
Q Consensus 171 ~Ka~aln~gl~~a~~~~~d~I~~lDaD~-~~~pd~L~~l~~~~~ 213 (513)
+...++..|++.. +.|+++++++|. .++++.+++++..+.
T Consensus 79 G~~~si~~gl~~~---~~~~vlv~~~D~P~i~~~~i~~L~~~~~ 119 (366)
T PRK14489 79 GPLSGILAGLEHA---DSEYLFVVACDTPFLPENLVKRLSKALA 119 (366)
T ss_pred ChHHHHHHHHHhc---CCCcEEEeeCCcCCCCHHHHHHHHHHhh
Confidence 3567788899887 789999999996 569999999998763
No 186
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=55.40 E-value=1.2e+02 Score=30.62 Aligned_cols=100 Identities=17% Similarity=0.265 Sum_probs=67.3
Q ss_pred EEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHH
Q 041333 102 QIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMK 181 (513)
Q Consensus 102 iIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~ 181 (513)
++|+-|.+ .++..|+++.++... +++ ++-+...+ .+++...+....+.++.|.......| -++++-.+.+
T Consensus 26 llpI~gkP-ii~~~l~~L~~~Gv~--eiv--i~~~y~~~----~i~~~~~d~~~~~~~I~y~~e~~~lG-Tag~l~~a~~ 95 (358)
T COG1208 26 LLPIAGKP-LIEYVLEALAAAGVE--EIV--LVVGYLGE----QIEEYFGDGEGLGVRITYVVEKEPLG-TAGALKNALD 95 (358)
T ss_pred cceeCCcc-HHHHHHHHHHHCCCc--EEE--EEeccchH----HHHHHHhcccccCCceEEEecCCcCc-cHHHHHHHHH
Confidence 45665554 788889988886532 332 33232222 12222222123468899998887777 7899999999
Q ss_pred hcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcC
Q 041333 182 RGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHN 215 (513)
Q Consensus 182 ~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~ 215 (513)
.. ..|-++++..|...+-| +..++...+++
T Consensus 96 ~l---~~~~f~v~~GDv~~~~d-l~~l~~~~~~~ 125 (358)
T COG1208 96 LL---GGDDFLVLNGDVLTDLD-LSELLEFHKKK 125 (358)
T ss_pred hc---CCCcEEEEECCeeeccC-HHHHHHHHHhc
Confidence 88 66888899999999988 88888887544
No 187
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=54.66 E-value=1.6e+02 Score=26.95 Aligned_cols=94 Identities=20% Similarity=0.231 Sum_probs=55.0
Q ss_pred CChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHHhcccC
Q 041333 107 NEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMKRGYVK 186 (513)
Q Consensus 107 ne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~~a~~~ 186 (513)
+....+..+++.+.+....+ + |+|.-| |+.....++ ++ +.++ ..+++....-......++++.
T Consensus 22 ~gkpLi~~~i~~a~~s~~~d-~--IvVaTd--~~~i~~~~~----~~---g~~v--~~~~~~~~~~~~r~~~~~~~~--- 84 (217)
T PF02348_consen 22 GGKPLIEYVIERAKQSKLID-E--IVVATD--DEEIDDIAE----EY---GAKV--IFRRGSLADDTDRFIEAIKHF--- 84 (217)
T ss_dssp TTEEHHHHHHHHHHHTTTTS-E--EEEEES--SHHHHHHHH----HT---TSEE--EE--TTSSSHHHHHHHHHHHH---
T ss_pred CCccHHHHHHHHHHhCCCCC-e--EEEeCC--CHHHHHHHH----Hc---CCee--EEcChhhcCCcccHHHHHHHh---
Confidence 34468899999998876653 3 334433 222232332 22 4344 333322221233445666666
Q ss_pred CCc---EEEEEcCCCCC-ChHHHHHHHHHHhcCCC
Q 041333 187 SCD---FVVIFDADFQP-ESDFLTRTIPFLVHNPQ 217 (513)
Q Consensus 187 ~~d---~I~~lDaD~~~-~pd~L~~l~~~~~~~~~ 217 (513)
..+ +++.+.+|+-+ +|+.+.+++..+.++..
T Consensus 85 ~~~~~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~ 119 (217)
T PF02348_consen 85 LADDEDIVVRLQGDSPLLDPTSIDRAIEDIREANE 119 (217)
T ss_dssp TCSTTSEEEEESTTETT--HHHHHHHHHHHHHSTT
T ss_pred hhhHHhhccccCCeeeECCHHHHHHHHHHHhcCch
Confidence 555 99999999655 99999999998866554
No 188
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=54.52 E-value=1.2e+02 Score=27.25 Aligned_cols=96 Identities=15% Similarity=0.162 Sum_probs=56.1
Q ss_pred EeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHHh
Q 041333 103 IPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMKR 182 (513)
Q Consensus 103 IP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~~ 182 (513)
+|. +....+...++++.+.. -+++.| |.+..++.+.+ ..+ + .. ..+ ......| -...+..|++.
T Consensus 22 l~i-~GkplI~~vi~~l~~~~--i~~I~V-v~~~~~~~~~~-~l~----~---~~--~~~-~~~~g~G-~~~~l~~al~~ 85 (183)
T TIGR00454 22 IEV-CGRCLIDHVLSPLLKSK--VNNIII-ATSPHTPKTEE-YIN----S---AY--KDY-KNASGKG-YIEDLNECIGE 85 (183)
T ss_pred eEE-CCEEHHHHHHHHHHhCC--CCEEEE-EeCCCHHHHHH-HHh----h---cC--cEE-EecCCCC-HHHHHHHHhhc
Confidence 344 34568888888887654 234444 44433333222 221 1 11 122 2233344 46678888875
Q ss_pred cccCCCcEEEEEcCCCC-CChHHHHHHHHHHhcCC
Q 041333 183 GYVKSCDFVVIFDADFQ-PESDFLTRTIPFLVHNP 216 (513)
Q Consensus 183 a~~~~~d~I~~lDaD~~-~~pd~L~~l~~~~~~~~ 216 (513)
.. ..+.++++-+|.- +.++.+.++++.+...+
T Consensus 86 ~~--~~~~~lv~~~D~P~i~~~~i~~li~~~~~~~ 118 (183)
T TIGR00454 86 LY--FSEPFLVVSSDLINLRSKIIDSIVDYYYCIK 118 (183)
T ss_pred cc--CCCCEEEEeCCcCcCCHHHHHHHHHHHHhcC
Confidence 31 3577999999975 59999999998774443
No 189
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=54.24 E-value=1.8e+02 Score=27.37 Aligned_cols=113 Identities=11% Similarity=-0.049 Sum_probs=53.2
Q ss_pred EEEeccCC--hHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCC--C------
Q 041333 101 VQIPMFNE--REVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRK--G------ 170 (513)
Q Consensus 101 IiIP~yne--~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~--g------ 170 (513)
|++.+-++ ...+.-++.|+++..-...++.| +.|+-+++..+. .+...+ ..+..+.++..+... .
T Consensus 3 i~~~a~d~~y~~~~~v~i~Sl~~~~~~~~~~~i-l~~~is~~~~~~-L~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~ 77 (246)
T cd00505 3 IVIVATGDEYLRGAIVLMKSVLRHRTKPLRFHV-LTNPLSDTFKAA-LDNLRK---LYNFNYELIPVDILDSVDSEHLKR 77 (246)
T ss_pred EEEEecCcchhHHHHHHHHHHHHhCCCCeEEEE-EEccccHHHHHH-HHHHHh---ccCceEEEEeccccCcchhhhhcC
Confidence 44555453 37888899999875433233333 444444444333 322222 124455555432111 0
Q ss_pred --CCh-hHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhcCCCeeEE
Q 041333 171 --YKA-GALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVHNPQLALV 221 (513)
Q Consensus 171 --~Ka-~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~~~~v~~V 221 (513)
.+. -.+-..-+.. ++.|=|+.+|+|.++-.| +..+...-..+..+++|
T Consensus 78 ~~~~~~y~RL~i~~ll--p~~~kvlYLD~D~iv~~d-i~~L~~~~l~~~~~aav 128 (246)
T cd00505 78 PIKIVTLTKLHLPNLV--PDYDKILYVDADILVLTD-IDELWDTPLGGQELAAA 128 (246)
T ss_pred ccccceeHHHHHHHHh--hccCeEEEEcCCeeeccC-HHHHhhccCCCCeEEEc
Confidence 000 0111111222 248899999999988644 33433321133344444
No 190
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=53.67 E-value=2e+02 Score=30.10 Aligned_cols=94 Identities=12% Similarity=0.104 Sum_probs=57.5
Q ss_pred EEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHH
Q 041333 102 QIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMK 181 (513)
Q Consensus 102 iIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~ 181 (513)
++|.-+ ...++.+++++.+.. -+++.+ |.... .+. +.+ .. . +.++.++..++..| -++++..+++
T Consensus 27 l~~i~g-kpli~~~i~~l~~~g--i~~i~v-v~~~~-~~~---i~~----~~-~-~~~~~~i~~~~~~G-t~~al~~a~~ 91 (456)
T PRK09451 27 LHTLAG-KPMVQHVIDAANELG--AQHVHL-VYGHG-GDL---LKQ----TL-A-DEPLNWVLQAEQLG-TGHAMQQAAP 91 (456)
T ss_pred cceeCC-hhHHHHHHHHHHhcC--CCcEEE-EECCC-HHH---HHH----hh-c-cCCcEEEECCCCCC-cHHHHHHHHH
Confidence 445544 567888888887654 234544 33321 121 211 11 1 22566665555445 6788888887
Q ss_pred hcccCCCcEEEEEcCCC-CCChHHHHHHHHHH
Q 041333 182 RGYVKSCDFVVIFDADF-QPESDFLTRTIPFL 212 (513)
Q Consensus 182 ~a~~~~~d~I~~lDaD~-~~~pd~L~~l~~~~ 212 (513)
... +.|.++++++|. .+.++.++++++..
T Consensus 92 ~l~--~~~~vlV~~gD~P~i~~~~i~~l~~~~ 121 (456)
T PRK09451 92 FFA--DDEDILMLYGDVPLISVETLQRLRDAK 121 (456)
T ss_pred hhc--cCCcEEEEeCCcccCCHHHHHHHHHHh
Confidence 651 357899999997 56888888888765
No 191
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=52.14 E-value=1.5e+02 Score=27.10 Aligned_cols=89 Identities=8% Similarity=0.137 Sum_probs=57.9
Q ss_pred CChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHHhcccC
Q 041333 107 NEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMKRGYVK 186 (513)
Q Consensus 107 ne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~~a~~~ 186 (513)
|....++..++.+..|. + .+| |+-+.+.+ + .. . .++.++....+..|--.++-.|+++.
T Consensus 27 ~g~~lie~v~~~L~~~~---~-~vv-i~~~~~~~--~-~~--------~--~g~~vv~D~~~~~GPL~Gi~~al~~~--- 85 (192)
T COG0746 27 NGRPLIEHVIDRLRPQV---D-VVV-ISANRNQG--R-YA--------E--FGLPVVPDELPGFGPLAGILAALRHF--- 85 (192)
T ss_pred CCeEHHHHHHHHhcccC---C-EEE-EeCCCchh--h-hh--------c--cCCceeecCCCCCCCHHHHHHHHHhC---
Confidence 55667777777777663 2 223 33333222 1 11 1 23455544433314677899999999
Q ss_pred CCcEEEEEcCCCCC-ChHHHHHHHHHHhcCC
Q 041333 187 SCDFVVIFDADFQP-ESDFLTRTIPFLVHNP 216 (513)
Q Consensus 187 ~~d~I~~lDaD~~~-~pd~L~~l~~~~~~~~ 216 (513)
++|+++++=+|+-. +++.++++.+.+.+++
T Consensus 86 ~~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~ 116 (192)
T COG0746 86 GTEWVLVLPCDMPFIPPELVERLLSAFKQTG 116 (192)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHhhcccC
Confidence 89999999999755 8999999999885444
No 192
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=51.67 E-value=1.4e+02 Score=28.45 Aligned_cols=93 Identities=12% Similarity=0.144 Sum_probs=52.4
Q ss_pred hHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHHhcccCCC
Q 041333 109 REVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMKRGYVKSC 188 (513)
Q Consensus 109 ~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~~a~~~~~ 188 (513)
...+..+++.+.+... -++++| |+.+...+..+.. .+++ +.++.++ ....+ .....-.|++... .+.
T Consensus 52 kpll~~tl~~~~~~~~-i~~IvV-V~~~~~~~~~~~~----~~~~---~~~i~~v--~gg~~-r~~SV~~gl~~l~-~~~ 118 (252)
T PLN02728 52 QPIALYSLYTFARMPE-VKEIVV-VCDPSYRDVFEEA----VENI---DVPLKFA--LPGKE-RQDSVFNGLQEVD-ANS 118 (252)
T ss_pred eEHHHHHHHHHHhCCC-CCeEEE-EeCHHHHHHHHHH----HHhc---CCceEEc--CCCCc-hHHHHHHHHHhcc-CCC
Confidence 4577888888876422 234444 4433212212211 1222 2334433 11112 3556777887651 246
Q ss_pred cEEEEEcCC-CCCChHHHHHHHHHHhc
Q 041333 189 DFVVIFDAD-FQPESDFLTRTIPFLVH 214 (513)
Q Consensus 189 d~I~~lDaD-~~~~pd~L~~l~~~~~~ 214 (513)
++|++.|+| -.++++.+.+++.....
T Consensus 119 ~~VlihDaarP~vs~~~i~~li~~~~~ 145 (252)
T PLN02728 119 ELVCIHDSARPLVTSADIEKVLKDAAV 145 (252)
T ss_pred CEEEEecCcCCCCCHHHHHHHHHHHhh
Confidence 899999998 56699999999988743
No 193
>KOG2791 consensus N-acetylglucosaminyltransferase [Carbohydrate transport and metabolism]
Probab=51.36 E-value=1.2e+02 Score=30.00 Aligned_cols=49 Identities=16% Similarity=0.210 Sum_probs=35.3
Q ss_pred cEEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHH
Q 041333 98 MVLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVE 147 (513)
Q Consensus 98 ~VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~ 147 (513)
++-+++-++|.++.++-+++|+.+..--.+.+.| +..|..-++..++++
T Consensus 118 ~~vlV~qVHnRp~Ylr~lveSlrk~kGI~~tLli-fSHD~~~~eiN~~I~ 166 (455)
T KOG2791|consen 118 RVVLVLQVHNRPQYLRVLVESLRKVKGISETLLI-FSHDGYFEEINRIIE 166 (455)
T ss_pred eEEEEEEEcCcHHHHHHHHHHHHhccCccceEEE-EeccchHHHHHHHHh
Confidence 5778889999999999999999975544444444 666655555555554
No 194
>PLN03183 acetylglucosaminyltransferase family protein; Provisional
Probab=49.68 E-value=3.2e+02 Score=28.36 Aligned_cols=108 Identities=17% Similarity=0.094 Sum_probs=62.1
Q ss_pred CCCCCcEEEEEecc-CChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHH-hhccCccEEEEEcCC--C
Q 041333 93 NSSYPMVLVQIPMF-NEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQR-WASKGINIKYEVRDN--R 168 (513)
Q Consensus 93 ~~~~P~VsIiIP~y-ne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~-~~~~~~~v~~~~~~~--~ 168 (513)
++..|++..+|-++ |+.+.++++|+++- .|+..+.|.++-.+++.....+....... ......+|.++.+.. .
T Consensus 74 ~~~~~r~AYLI~~h~~d~~~l~RLL~aLY---hprN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~vl~k~~~V~ 150 (421)
T PLN03183 74 QDKLPRFAYLVSGSKGDLEKLWRTLRALY---HPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYMITKANLVT 150 (421)
T ss_pred CCCCCeEEEEEEecCCcHHHHHHHHHHhc---CCCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEEEecceeec
Confidence 34578999999998 77789999987764 34455666555556665433332211100 112245787765433 2
Q ss_pred CCC--Ch----hHHHHHHHhcccCCCcEEEEEcCCCCC--ChHHH
Q 041333 169 KGY--KA----GALREGMKRGYVKSCDFVVIFDADFQP--ESDFL 205 (513)
Q Consensus 169 ~g~--Ka----~aln~gl~~a~~~~~d~I~~lDaD~~~--~pd~L 205 (513)
-|+ .. .++...++.+ .+.||++.+.+.+.| ..|.+
T Consensus 151 WGG~S~V~AtL~~m~~LL~~~--~~WDyfinLSGsDyPLkTqdel 193 (421)
T PLN03183 151 YRGPTMVANTLHACAILLKRS--KDWDWFINLSASDYPLVTQDDL 193 (421)
T ss_pred cCChHHHHHHHHHHHHHHhhC--CCCCEEEEccCCcccccCHHHH
Confidence 222 11 1222333433 378999999998887 45543
No 195
>COG1512 Beta-propeller domains of methanol dehydrogenase type [General function prediction only]
Probab=49.55 E-value=29 Score=33.46 Aligned_cols=45 Identities=11% Similarity=0.189 Sum_probs=35.0
Q ss_pred CChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHh
Q 041333 107 NEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRW 153 (513)
Q Consensus 107 ne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~ 153 (513)
+|...+++-++.+.+++. .++.|++++...+++.|....+..++|
T Consensus 46 ~e~~~Leq~l~~L~~kt~--~QiaVv~vpSt~g~~IE~ya~rlfd~W 90 (271)
T COG1512 46 AERGALEQQLADLEQKTG--AQIAVVTVPSTGGETIEQYATRLFDKW 90 (271)
T ss_pred hhHHHHHHHHHHHHhccC--CeEEEEEecCCCCCCHHHHHHHHHHhc
Confidence 566789999999888763 457676777777889998888777776
No 196
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=48.98 E-value=2.6e+02 Score=27.46 Aligned_cols=108 Identities=13% Similarity=0.158 Sum_probs=62.1
Q ss_pred CCCcEEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHH---------------HHHHhh---cc
Q 041333 95 SYPMVLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVEL---------------ECQRWA---SK 156 (513)
Q Consensus 95 ~~P~VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~---------------~~~~~~---~~ 156 (513)
..|+ .++|+-+.+ .+...++.+.+..- .+++| |+... .+..+..... ..+... ..
T Consensus 23 ~~PK--pLvpV~gkP-iI~~vl~~l~~~Gi--~~ivi-vv~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (297)
T TIGR01105 23 AIPK--EMLPIVDKP-MIQYIVDEIVAAGI--KEIVL-VTHAS-KNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPP 95 (297)
T ss_pred CCCc--eeeEECCEE-HHHHHHHHHHHCCC--CEEEE-EecCC-hHHHHHHHhchHHHHHHHHHhcchhhhhhhhhcCCC
Confidence 4555 367776766 88888888887642 34444 33332 2222222210 000000 12
Q ss_pred CccEEEEEcCCCCCCChhHHHHHHHhcccCCCcEEEEEcCCCCCCh-------HHHHHHHHHHh
Q 041333 157 GINIKYEVRDNRKGYKAGALREGMKRGYVKSCDFVVIFDADFQPES-------DFLTRTIPFLV 213 (513)
Q Consensus 157 ~~~v~~~~~~~~~g~Ka~aln~gl~~a~~~~~d~I~~lDaD~~~~p-------d~L~~l~~~~~ 213 (513)
+.++.++..+++.| -++|+..+.+... +.+++++. +|+..++ -.+.+++..+.
T Consensus 96 ~~~i~~~~q~~~lG-tg~Av~~a~~~l~--~~~flvv~-gD~l~~~~~~~~~~~~l~~li~~~~ 155 (297)
T TIGR01105 96 GVTIMNVRQAQPLG-LGHSILCARPVVG--DNPFVVVL-PDIIIDDATADPLRYNLAAMIARFN 155 (297)
T ss_pred CceEEEeeCCCcCc-hHHHHHHHHHHhC--CCCEEEEE-CCeeccccccccchhHHHHHHHHHH
Confidence 45677777776666 6899988888761 24566555 8877654 37778887663
No 197
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=48.64 E-value=1.6e+02 Score=29.56 Aligned_cols=98 Identities=22% Similarity=0.203 Sum_probs=56.2
Q ss_pred EEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHH
Q 041333 102 QIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMK 181 (513)
Q Consensus 102 iIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~ 181 (513)
.+|.-+. ..+..+++++.+.. -.++.| +......+..+... .+....+.++.++..+...| -++++..+.+
T Consensus 24 l~pv~g~-pli~~~l~~l~~~g--i~~i~v-v~~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~~~G-~~~al~~a~~ 94 (353)
T TIGR01208 24 LIPVANK-PILQYAIEDLAEAG--ITDIGI-VVGPVTGEEIKEIV----GEGERFGAKITYIVQGEPLG-LAHAVYTARD 94 (353)
T ss_pred ccEECCE-eHHHHHHHHHHHCC--CCEEEE-EeCCCCHHHHHHHH----hcccccCceEEEEECCCCCC-HHHHHHHHHH
Confidence 3455555 78899999988764 234433 33331222222222 11111234566666555555 6888888888
Q ss_pred hcccCCCcEEEEEcCCCCCChHHHHHHHHHH
Q 041333 182 RGYVKSCDFVVIFDADFQPESDFLTRTIPFL 212 (513)
Q Consensus 182 ~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~ 212 (513)
.. +.|-++++.+|...+. .+.+++..+
T Consensus 95 ~l---~~~~~li~~gD~~~~~-~l~~l~~~~ 121 (353)
T TIGR01208 95 FL---GDDDFVVYLGDNLIQD-GISRFVKSF 121 (353)
T ss_pred hc---CCCCEEEEECCeecCc-cHHHHHHHH
Confidence 76 4444556779987764 456677665
No 198
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase family 14 GT14 from CAZY, a family of two different beta-1,6-N-acetylglucosaminyltransferase enzymes, I-branching enzyme (2.4.1.150 from EC) and core-2 branching enzyme (2.4.1.102 from EC). I-branching enzyme, an integral membrane protein, converts linear into branched poly-N-acetyllactosaminoglycans in the glycosylation pathway, and is responsible for the production of the blood group I-antigen during embryonic development []. Core-2 branching enzyme, also an integral membrane protein, forms crucial side-chain branches in O-glycans in the glycosylation pathway [].; GO: 0008375 acetylglucosaminyltransferase activity, 0016020 membrane; PDB: 3OTK_D 2GAM_A 2GAK_B.
Probab=47.18 E-value=98 Score=29.12 Aligned_cols=114 Identities=13% Similarity=0.181 Sum_probs=51.2
Q ss_pred EEEEEeccC-ChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCC--CCC--Ch
Q 041333 99 VLVQIPMFN-EREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNR--KGY--KA 173 (513)
Q Consensus 99 VsIiIP~yn-e~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~--~g~--Ka 173 (513)
|.-+|-+++ ..+.+++.++.+- .|.....|.|+-.+++...+.+.+ ......++.++..... =|+ ..
T Consensus 1 iAylil~h~~~~~~~~~l~~~l~---~~~~~f~iHiD~k~~~~~~~~~~~-----~~~~~~nv~~v~~r~~v~WG~~S~v 72 (244)
T PF02485_consen 1 IAYLILAHKNDPEQLERLLRLLY---HPDNDFYIHIDKKSPDYFYEEIKK-----LISCFPNVHFVPKRVDVRWGGFSLV 72 (244)
T ss_dssp EEEEEEESS--HHHHHHHHHHH-----TTSEEEEEE-TTS-HHHHHHHHH-----HHCT-TTEEE-SS-----TTSHHHH
T ss_pred CEEEEEecCCCHHHHHHHHHHhc---CCCCEEEEEEcCCCChHHHHHHHH-----hcccCCceeecccccccccCCccHH
Confidence 356777866 6677777776655 344555554444555544443321 2234467777753222 221 23
Q ss_pred hHHHHHHHhccc--CCCcEEEEEcCCCCC--ChHHHHHHHHHHhcC-CCeeEEEe
Q 041333 174 GALREGMKRGYV--KSCDFVVIFDADFQP--ESDFLTRTIPFLVHN-PQLALVQA 223 (513)
Q Consensus 174 ~aln~gl~~a~~--~~~d~I~~lDaD~~~--~pd~L~~l~~~~~~~-~~v~~V~~ 223 (513)
.|.-.+++.|.. .+.||++++..++.| +.+.+.+ .|+.+ .+...+..
T Consensus 73 ~A~l~ll~~al~~~~~~~y~~llSg~D~Pl~s~~~i~~---~l~~~~~~~~f~~~ 124 (244)
T PF02485_consen 73 EATLNLLREALKRDGDWDYFILLSGQDYPLKSNEEIHE---FLESNNGDNNFIES 124 (244)
T ss_dssp HHHHHHHHHHHHH-S---EEEEEETTEEESS-HHHHHH---HHHHTTT--B---B
T ss_pred HHHHHHHHHHHhcCCCCcEEEEcccccccccchHHHHH---HHHhcCCCCcceec
Confidence 333334444332 288999999888777 4555544 44444 23444444
No 199
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=46.94 E-value=1.7e+02 Score=27.84 Aligned_cols=104 Identities=16% Similarity=0.118 Sum_probs=58.9
Q ss_pred EEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHH-----HHHHHhh-----------ccCccEEEEEc
Q 041333 102 QIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVE-----LECQRWA-----------SKGINIKYEVR 165 (513)
Q Consensus 102 iIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~-----~~~~~~~-----------~~~~~v~~~~~ 165 (513)
.+|.-+. ..+..+++++.+... .++.| |.....+...+.+.+ ...++.. ..+.++.++..
T Consensus 25 llpv~gk-pli~~~l~~l~~~gi--~~i~i-v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 100 (267)
T cd02541 25 MLPIVDK-PVIQYIVEEAVAAGI--EDIII-VTGRGKRAIEDHFDRSYELEETLEKKGKTDLLEEVRIISDLANIHYVRQ 100 (267)
T ss_pred eeEECCE-EHHHHHHHHHHHCCC--CEEEE-EeCCchHHHHHHhCCcHHHHHHHHhcccHHHhhhhhcccCCceEEEEEc
Confidence 5676665 788999998887543 34444 443322211111100 0000000 01345566655
Q ss_pred CCCCCCChhHHHHHHHhcccCCCcEEEEEcCCCCCCh-H-HHHHHHHHHh
Q 041333 166 DNRKGYKAGALREGMKRGYVKSCDFVVIFDADFQPES-D-FLTRTIPFLV 213 (513)
Q Consensus 166 ~~~~g~Ka~aln~gl~~a~~~~~d~I~~lDaD~~~~p-d-~L~~l~~~~~ 213 (513)
+...| -++++..+.+.. +.+-++++.+|..... + .+.+++..+.
T Consensus 101 ~~~~G-t~~al~~~~~~i---~~~~~lv~~gD~~~~~~~~~~~~l~~~~~ 146 (267)
T cd02541 101 KEPLG-LGHAVLCAKPFI---GDEPFAVLLGDDLIDSKEPCLKQLIEAYE 146 (267)
T ss_pred CCCCC-hHHHHHHHHHHh---CCCceEEEECCeEEeCCchHHHHHHHHHH
Confidence 55555 688999998887 5466777788876654 3 6888888764
No 200
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=45.76 E-value=2.7e+02 Score=26.40 Aligned_cols=37 Identities=16% Similarity=0.113 Sum_probs=26.3
Q ss_pred ChhHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHH
Q 041333 172 KAGALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFL 212 (513)
Q Consensus 172 Ka~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~ 212 (513)
-++|+..+.+.. +.|.++++++|.+.+.| +.+++...
T Consensus 105 t~~al~~~~~~i---~~e~flv~~gD~i~~~d-l~~~~~~h 141 (254)
T TIGR02623 105 TGGRLKRVREYL---DDEAFCFTYGDGVADID-IKALIAFH 141 (254)
T ss_pred cHHHHHHHHHhc---CCCeEEEEeCCeEecCC-HHHHHHHH
Confidence 577888888776 55677799999876555 44555544
No 201
>PF07507 WavE: WavE lipopolysaccharide synthesis; InterPro: IPR011122 These proteins are encoded by putative wav gene clusters, which are responsible for the synthesis of the core oligosaccharide (OS) region of Vibrio cholerae lipopolysaccharide [].
Probab=43.62 E-value=1.1e+02 Score=30.43 Aligned_cols=46 Identities=13% Similarity=0.249 Sum_probs=29.3
Q ss_pred HHHHHhcccCCCcEEEEEcCCCCCC-hHHHHHHHHHHhcCCCeeEEEeeE
Q 041333 177 REGMKRGYVKSCDFVVIFDADFQPE-SDFLTRTIPFLVHNPQLALVQARW 225 (513)
Q Consensus 177 n~gl~~a~~~~~d~I~~lDaD~~~~-pd~L~~l~~~~~~~~~v~~V~~~~ 225 (513)
..|++++ +.+|++=+=+|..+. .++++-.-.+...+++......++
T Consensus 88 ~aGL~~~---~~~Ya~KlRtD~~l~~~~~l~~~~~~~~~~~~~~~~~~RI 134 (311)
T PF07507_consen 88 LAGLKAA---KTKYAMKLRTDNRLTGNNFLDLYEKYPDRESNYSFFNERI 134 (311)
T ss_pred HHHHHHh---CCceEEEEcccccccchHHHHHHHHhcccCcccccccCcE
Confidence 4699999 899999999998885 454444444333233443333343
No 202
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=41.36 E-value=2.1e+02 Score=26.83 Aligned_cols=96 Identities=16% Similarity=0.227 Sum_probs=58.0
Q ss_pred EEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHH
Q 041333 101 VQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGM 180 (513)
Q Consensus 101 IiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl 180 (513)
++.|.-.|+ .|..+|+.+.+..+- ++++|--+|.-+|+..+.. |.+ +| +.+. .|.-..-+..-+
T Consensus 21 vLlpL~~~p-mI~~~lervrks~~~-d~ivvATS~~~~d~~l~~~----~~~---~G--~~vf-----rGs~~dVL~Rf~ 84 (241)
T COG1861 21 VLLPLGGEP-MIEYQLERVRKSKDL-DKIVVATSDKEEDDALEEV----CRS---HG--FYVF-----RGSEEDVLQRFI 84 (241)
T ss_pred hhhhcCCCc-hHHHHHHHHhccccc-cceEEEecCCcchhHHHHH----HHH---cC--eeEe-----cCCHHHHHHHHH
Confidence 556665554 678899999887654 4544434444444444433 332 23 3333 232344454444
Q ss_pred HhcccCCCcEEEEEcCCCCC-ChHHHHHHHHHH
Q 041333 181 KRGYVKSCDFVVIFDADFQP-ESDFLTRTIPFL 212 (513)
Q Consensus 181 ~~a~~~~~d~I~~lDaD~~~-~pd~L~~l~~~~ 212 (513)
..+..-.++.|+-+-+|+-+ +|+.+..++..+
T Consensus 85 ~a~~a~~~~~VVRvTGD~P~~dp~l~d~~v~~~ 117 (241)
T COG1861 85 IAIKAYSADVVVRVTGDNPFLDPELVDAAVDRH 117 (241)
T ss_pred HHHHhcCCCeEEEeeCCCCCCCHHHHHHHHHHH
Confidence 44433488999999999865 899999888765
No 203
>PRK15171 lipopolysaccharide 1,3-galactosyltransferase; Provisional
Probab=41.20 E-value=3.8e+02 Score=26.80 Aligned_cols=102 Identities=15% Similarity=0.129 Sum_probs=52.6
Q ss_pred CcEEEEEeccCCh-HHHHHHHHHHHcCCCCCCeeEEEEEeC-CCchhHHHHHHHHHHHhhccCccEEEEEcCC--CCC--
Q 041333 97 PMVLVQIPMFNER-EVYQLSIGAACGLSWPSDRLIIQVLDD-STDLTIKDMVELECQRWASKGINIKYEVRDN--RKG-- 170 (513)
Q Consensus 97 P~VsIiIP~yne~-~~l~~~l~sl~~q~yp~~~i~IiV~Dd-s~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~--~~g-- 170 (513)
..+.|+..+=+.- ..+.-++.|++... ++..+.+.|.++ -+++..+ ..++.++++ +.++.....+. -.+
T Consensus 24 ~~i~Iv~~~D~ny~~~~~vsi~Sil~nn-~~~~~~f~Il~~~is~e~~~-~l~~l~~~~---~~~i~~~~id~~~~~~~~ 98 (334)
T PRK15171 24 NSLDIAYGIDKNFLFGCGVSIASVLLNN-PDKSLVFHVFTDYISDADKQ-RFSALAKQY---NTRINIYLINCERLKSLP 98 (334)
T ss_pred CceeEEEECcHhhHHHHHHHHHHHHHhC-CCCCEEEEEEeCCCCHHHHH-HHHHHHHhc---CCeEEEEEeCHHHHhCCc
Confidence 4577777773332 88899999998643 333455555544 4444444 334444443 33454443221 010
Q ss_pred -CChhHHHH----HHHhcccCCCcEEEEEcCCCCCChH
Q 041333 171 -YKAGALRE----GMKRGYVKSCDFVVIFDADFQPESD 203 (513)
Q Consensus 171 -~Ka~aln~----gl~~a~~~~~d~I~~lDaD~~~~pd 203 (513)
.+...... .+......+.|-|+.+|+|.++..|
T Consensus 99 ~~~~~s~atY~Rl~ip~llp~~~dkvLYLD~Diiv~~d 136 (334)
T PRK15171 99 STKNWTYATYFRFIIADYFIDKTDKVLYLDADIACKGS 136 (334)
T ss_pred ccCcCCHHHHHHHHHHHhhhhhcCEEEEeeCCEEecCC
Confidence 01111111 1111111258899999999988654
No 204
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=39.62 E-value=2.4e+02 Score=26.59 Aligned_cols=103 Identities=17% Similarity=0.138 Sum_probs=55.4
Q ss_pred EEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHH--H-------------HHhh--ccCccEEEEE
Q 041333 102 QIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELE--C-------------QRWA--SKGINIKYEV 164 (513)
Q Consensus 102 iIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~--~-------------~~~~--~~~~~v~~~~ 164 (513)
.+|.-+. ..+...++++.+... .++.| |.... .+......... . .+.. ....++.+..
T Consensus 25 llpi~g~-pli~~~l~~l~~~gi--~~v~i-v~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 99 (260)
T TIGR01099 25 MLPIVDK-PLIQYVVEEAVEAGI--EDILI-VTGRG-KRAIEDHFDTSYELEHQLEKRGKEELLKEVRSISPLATIFYVR 99 (260)
T ss_pred eEEECCE-EHHHHHHHHHHhCCC--CEEEE-EeCCc-HHHHHHHhcccHHHHHHHHhhhhHHHHHHhhhccccceEEEEe
Confidence 5666665 788889988887532 24443 33322 22222111100 0 0000 0123455554
Q ss_pred cCCCCCCChhHHHHHHHhcccCCCcEEEEEcCCCCCCh--HHHHHHHHHHh
Q 041333 165 RDNRKGYKAGALREGMKRGYVKSCDFVVIFDADFQPES--DFLTRTIPFLV 213 (513)
Q Consensus 165 ~~~~~g~Ka~aln~gl~~a~~~~~d~I~~lDaD~~~~p--d~L~~l~~~~~ 213 (513)
.+...| -++++..+.+.. ..+-++++-+|..... +.+.++++...
T Consensus 100 ~~~~~G-~~~al~~~~~~~---~~~~~lv~~gD~~~~~~~~~~~~l~~~~~ 146 (260)
T TIGR01099 100 QKEQKG-LGHAVLCAEPFV---GDEPFAVILGDDIVVSEEPALKQMIDLYE 146 (260)
T ss_pred cCCCCC-HHHHHHHHHHhh---CCCCEEEEeccceecCCcHHHHHHHHHHH
Confidence 444455 688888888776 4455666777766644 37788888763
No 205
>TIGR02584 cas_NE0113 CRISPR-associated protein, NE0113 family. Members of this minor CRISPR-associated (Cas) protein family are found in cas gene clusters in Vibrio vulnificus YJ016, Nitrosomonas europaea ATCC 19718, Mannheimia succiniciproducens MBEL55E, and Verrucomicrobium spinosum.
Probab=39.06 E-value=1.6e+02 Score=27.12 Aligned_cols=43 Identities=12% Similarity=0.060 Sum_probs=28.9
Q ss_pred EEEeccCC-hHHHHHHHHHHHcCCCC--CCeeEEEEEeCCCchhHH
Q 041333 101 VQIPMFNE-REVYQLSIGAACGLSWP--SDRLIIQVLDDSTDLTIK 143 (513)
Q Consensus 101 IiIP~yne-~~~l~~~l~sl~~q~yp--~~~i~IiV~Dds~D~t~~ 143 (513)
|++.+-+. +.++.++|.++.++..| .+++.|+-..++.+...+
T Consensus 1 ILvat~G~sPQVVTETLyaL~~~g~~~~pdEi~vItT~~g~~~~~~ 46 (209)
T TIGR02584 1 ILLCVSGMSPQIITETIYALAQESPPVVPEEIHVITTSDGKRDIQQ 46 (209)
T ss_pred CEEEecCCCCchHHHHHHHHHhcCCCCCCCeEEEEEccCcHHHHHH
Confidence 34555555 48999999999998877 677766444445444444
No 206
>PHA02688 ORF059 IMV protein VP55; Provisional
Probab=37.92 E-value=2.9e+02 Score=27.22 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=34.9
Q ss_pred CCcEEEEEcCCCCC-ChHHHHHHHHHHhcCCCeeEEEeeEEEecC
Q 041333 187 SCDFVVIFDADFQP-ESDFLTRTIPFLVHNPQLALVQARWEFVNA 230 (513)
Q Consensus 187 ~~d~I~~lDaD~~~-~pd~L~~l~~~~~~~~~v~~V~~~~~~~n~ 230 (513)
..+|++++++|..+ ++..+..++..| .+.+++++|-+-...+.
T Consensus 116 ~~~yivVlEDDnTi~~~~~~~~~I~~M-~~n~idilQLre~~~~~ 159 (323)
T PHA02688 116 EDEYIVVVEDDNTLRDITTLHPIIKAM-KEKNIDILQLRETLHNN 159 (323)
T ss_pred CCCeEEEEcCCCcccccHHHHHHHHHH-HhcCeEEEEeehhhhCC
Confidence 68999999999666 788888999999 56679999997554443
No 207
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=37.66 E-value=2.8e+02 Score=28.60 Aligned_cols=89 Identities=21% Similarity=0.281 Sum_probs=48.5
Q ss_pred EEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCC--CCCCChhHHHHH
Q 041333 102 QIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDN--RKGYKAGALREG 179 (513)
Q Consensus 102 iIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~--~~g~Ka~aln~g 179 (513)
++|.-+ ...+..+++.+.+. ..++.| |. +..++..+... .+ ...++.++..++ ..| .++++..
T Consensus 24 Llpi~g-kPli~~~i~~l~~~---~~~i~I-vv-~~~~~~i~~~~----~~---~~~~v~~~~~~~~~~~g-t~~al~~- 88 (430)
T PRK14359 24 LHTICG-KPMLFYILKEAFAI---SDDVHV-VL-HHQKERIKEAV----LE---YFPGVIFHTQDLENYPG-TGGALMG- 88 (430)
T ss_pred eCEECC-ccHHHHHHHHHHHc---CCcEEE-EE-CCCHHHHHHHH----Hh---cCCceEEEEecCccCCC-cHHHHhh-
Confidence 445544 55778888888764 134444 33 22223222222 11 223566664432 233 4566644
Q ss_pred HHhcccCCCcEEEEEcCCC-CCChHHHHHHH
Q 041333 180 MKRGYVKSCDFVVIFDADF-QPESDFLTRTI 209 (513)
Q Consensus 180 l~~a~~~~~d~I~~lDaD~-~~~pd~L~~l~ 209 (513)
. .. ..|.++++++|. ...++.++++.
T Consensus 89 ~-~~---~~d~vlv~~gD~p~~~~~~l~~l~ 115 (430)
T PRK14359 89 I-EP---KHERVLILNGDMPLVEKDELEKLL 115 (430)
T ss_pred c-cc---CCCeEEEEECCccCCCHHHHHHHH
Confidence 1 12 568999999998 45778887754
No 208
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=36.56 E-value=3.6e+02 Score=25.18 Aligned_cols=167 Identities=17% Similarity=0.151 Sum_probs=85.1
Q ss_pred CChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHHhcccC
Q 041333 107 NEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMKRGYVK 186 (513)
Q Consensus 107 ne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~~a~~~ 186 (513)
+....+..+++++.+...- +++ |+|+..+.-+..+.+.+ + .++.++.-. .. .......|++... .
T Consensus 26 ~Gkpvl~~tl~~f~~~~~i-~~I-vvv~~~~~~~~~~~~~~----~-----~~v~iv~GG-~t--R~~SV~ngL~~l~-~ 90 (221)
T PF01128_consen 26 GGKPVLEYTLEAFLASPEI-DEI-VVVVPPEDIDYVEELLS----K-----KKVKIVEGG-AT--RQESVYNGLKALA-E 90 (221)
T ss_dssp TTEEHHHHHHHHHHTTTTE-SEE-EEEESGGGHHHHHHHHH----H-----TTEEEEE---SS--HHHHHHHHHHCHH-C
T ss_pred CCeEeHHHHHHHHhcCCCC-CeE-EEEecchhHHHHHHhhc----C-----CCEEEecCC-hh--HHHHHHHHHHHHH-c
Confidence 4557899999998875432 344 43555544333333332 1 456655321 11 2345667777652 2
Q ss_pred CCcEEEEEcCC-CCCChHHHHHHHHHHhcCCCeeEEEeeE----EEecCCCchHHHHHHhhhcchhhHHhhhcccCCCcc
Q 041333 187 SCDFVVIFDAD-FQPESDFLTRTIPFLVHNPQLALVQARW----EFVNADECLMTRLQEMSLDYHFTVEQEVGSSTHAFF 261 (513)
Q Consensus 187 ~~d~I~~lDaD-~~~~pd~L~~l~~~~~~~~~v~~V~~~~----~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (513)
++|+|++-|+= -.++++.+.+++..+..+.+..+..-+. ...+.+.. ..+ . ..++...
T Consensus 91 ~~d~VlIHDaaRPfv~~~~i~~~i~~~~~~~~aai~~~p~~DTik~v~~~~~-v~~--------t-----ldR~~l~--- 153 (221)
T PF01128_consen 91 DCDIVLIHDAARPFVSPELIDRVIEAAREGHGAAIPALPVTDTIKRVDDDGF-VTE--------T-----LDRSKLW--- 153 (221)
T ss_dssp TSSEEEEEETTSTT--HHHHHHHHHHHHHTCSEEEEEEE-SSEEEEESTTSB-EEE--------E-----ETGGGEE---
T ss_pred CCCEEEEEccccCCCCHHHHHHHHHHHHhhcCcEEEEEeccccEEEEecCCc-ccc--------c-----CCHHHee---
Confidence 44899999997 5669999999999985423333332221 11121110 000 0 0011111
Q ss_pred ccccceeeeeHHHHHHcCCCC---CCCccchHHHHHHHhhCCCeEEEeccc
Q 041333 262 GFNGTAGVWRIAAVNEAGGWK---DRTTVEDMDLAVRASLKGWKFLYLGTV 309 (513)
Q Consensus 262 ~~~G~~~~~rr~~l~~~gg~~---~~~~~ED~~l~~rl~~~G~~i~~~~~~ 309 (513)
..=+--.||.+.+.++-.-. ....+||..+..++ |.++..++..
T Consensus 154 -~~QTPQ~F~~~~l~~a~~~a~~~~~~~tDdasl~~~~---g~~v~~V~G~ 200 (221)
T PF01128_consen 154 -AVQTPQAFRFELLLEAYEKADEEGFEFTDDASLVEAA---GKKVAIVEGS 200 (221)
T ss_dssp -EEEEEEEEEHHHHHHHHHTHHHHTHHHSSHHHHHHHT---TS-EEEEE--
T ss_pred -eecCCCeecHHHHHHHHHHHHhcCCCccCHHHHHHHc---CCCEEEEeCC
Confidence 12334578888776641100 01356777666555 9999888754
No 209
>COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only]
Probab=35.90 E-value=3.5e+02 Score=25.42 Aligned_cols=97 Identities=16% Similarity=0.190 Sum_probs=63.7
Q ss_pred EEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhH---
Q 041333 99 VLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGA--- 175 (513)
Q Consensus 99 VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~a--- 175 (513)
|-|--|-.|..+...+.++-+...+.+++. | |.|..+.+|++.+++. +..+-...+| | |..+
T Consensus 130 viVHTPr~nK~e~t~~ildi~~~~~l~~~l--v-vIDH~N~etv~~vld~--------e~~vGlTvqP---g-Klt~~eA 194 (254)
T COG1099 130 VIVHTPRRNKKEATSKILDILIESGLKPSL--V-VIDHVNEETVDEVLDE--------EFYVGLTVQP---G-KLTVEEA 194 (254)
T ss_pred EEEeCCCCcchhHHHHHHHHHHHcCCChhh--e-ehhcccHHHHHHHHhc--------cceEEEEecC---C-cCCHHHH
Confidence 666678888889999999888878877654 2 6788888888877652 2333333334 3 4433
Q ss_pred HHHHHHhcccCCCcEEEEEcCCCCC-ChHHHHHHHHHHh
Q 041333 176 LREGMKRGYVKSCDFVVIFDADFQP-ESDFLTRTIPFLV 213 (513)
Q Consensus 176 ln~gl~~a~~~~~d~I~~lDaD~~~-~pd~L~~l~~~~~ 213 (513)
...--++. .-.+++--|++... +|-.+.+++-.++
T Consensus 195 veIV~ey~---~~r~ilnSD~~s~~sd~lavprtal~m~ 230 (254)
T COG1099 195 VEIVREYG---AERIILNSDAGSAASDPLAVPRTALEME 230 (254)
T ss_pred HHHHHHhC---cceEEEecccccccccchhhhHHHHHHH
Confidence 22222333 45677777777655 7888888887773
No 210
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=34.77 E-value=2.7e+02 Score=23.21 Aligned_cols=61 Identities=13% Similarity=0.194 Sum_probs=35.7
Q ss_pred ccEEEEEcCCCCCCChhHHHHHHHhcccCCCcEEEEEcCCC-CCChHHHHHHHHHHhcCCCeeEEEee
Q 041333 158 INIKYEVRDNRKGYKAGALREGMKRGYVKSCDFVVIFDADF-QPESDFLTRTIPFLVHNPQLALVQAR 224 (513)
Q Consensus 158 ~~v~~~~~~~~~g~Ka~aln~gl~~a~~~~~d~I~~lDaD~-~~~pd~L~~l~~~~~~~~~v~~V~~~ 224 (513)
..+.+.... .+.-..-++.+++.+ ...++-|+++.+|+ .++++.|++....++ +. ++|-|+
T Consensus 33 ~~~~~~~Q~--g~dLG~Rm~~a~~~~-~~g~~~vvliGsD~P~l~~~~l~~A~~~L~-~~--d~VlgP 94 (122)
T PF09837_consen 33 SGFSFFPQQ--GGDLGERMANAFQQA-ARGYEPVVLIGSDCPDLTPDDLEQAFEALQ-RH--DVVLGP 94 (122)
T ss_dssp TTSEEEE----SSSHHHHHHHHHHHH-HTT-SEEEEE-SS-TT--HHHHHHHHHHTT-T---SEEEEE
T ss_pred CCCEEeecC--CCCHHHHHHHHHHHH-HcCCCcEEEEcCCCCCCCHHHHHHHHHHhc-cC--CEEEee
Confidence 345555442 222344566677666 44788999999996 559999999999983 33 456555
No 211
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=34.25 E-value=3.1e+02 Score=27.82 Aligned_cols=86 Identities=9% Similarity=0.011 Sum_probs=52.4
Q ss_pred CChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHHhcccC
Q 041333 107 NEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMKRGYVK 186 (513)
Q Consensus 107 ne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~~a~~~ 186 (513)
+....++.+++.+... .++++| +..+... +.. + . .++.++..+....|-..++..|++++
T Consensus 198 ~Gk~ll~~~l~~l~~~---~~~vvV-~~~~~~~---~~~-~-------~--~~v~~i~d~~~~~Gpl~gi~~al~~~--- 257 (369)
T PRK14490 198 HESNQLVHTAALLRPH---CQEVFI-SCRAEQA---EQY-R-------S--FGIPLITDSYLDIGPLGGLLSAQRHH--- 257 (369)
T ss_pred CCccHHHHHHHHHHhh---CCEEEE-EeCCchh---hHH-h-------h--cCCcEEeCCCCCCCcHHHHHHHHHhC---
Confidence 5566888888888653 233333 3332211 111 1 1 24455544432223566788888887
Q ss_pred CCcEEEEEcCCCCC-ChHHHHHHHHHH
Q 041333 187 SCDFVVIFDADFQP-ESDFLTRTIPFL 212 (513)
Q Consensus 187 ~~d~I~~lDaD~~~-~pd~L~~l~~~~ 212 (513)
+.+.++++=+|.-. +++.+++++...
T Consensus 258 ~~~~~lv~~~DmP~i~~~~i~~L~~~~ 284 (369)
T PRK14490 258 PDAAWLVVACDLPFLDEATLQQLVEGR 284 (369)
T ss_pred CCCcEEEEeCCcCCCCHHHHHHHHHhc
Confidence 77888999999655 899999988764
No 212
>COG1158 Rho Transcription termination factor [Transcription]
Probab=33.15 E-value=2.3e+02 Score=28.33 Aligned_cols=89 Identities=15% Similarity=0.188 Sum_probs=50.3
Q ss_pred EEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEc--CCCCCCChhHHH
Q 041333 100 LVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVR--DNRKGYKAGALR 177 (513)
Q Consensus 100 sIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~--~~~~g~Ka~aln 177 (513)
-|+-|-.-....+-+.|......++|..+++|...|....+-.+ +.+ .++-.++.. +++...-..--.
T Consensus 177 LIVAPPkaGKT~lLq~IA~aIt~N~Pe~~LiVLLIDERPEEVTd-mqr---------sV~geViaSTFDepp~~HvqVAE 246 (422)
T COG1158 177 LIVAPPKAGKTTLLQNIANAITTNHPECELIVLLIDERPEEVTD-MQR---------SVKGEVVASTFDEPPSRHVQVAE 246 (422)
T ss_pred eEecCCCCCchHHHHHHHHHHhcCCCceEEEEEEecCCchHHHH-HHH---------hhcceEEeecCCCcchhhHHHHH
Confidence 35555555556777788888888999888888777776654444 322 123334432 222111111112
Q ss_pred HHHHhccc---CCCcEEEEEcCCC
Q 041333 178 EGMKRGYV---KSCDFVVIFDADF 198 (513)
Q Consensus 178 ~gl~~a~~---~~~d~I~~lDaD~ 198 (513)
..++.|.+ .+.|.|+++|+=+
T Consensus 247 ~viEkAKRlVE~~kDVVILLDSIT 270 (422)
T COG1158 247 MVIEKAKRLVEHGKDVVILLDSIT 270 (422)
T ss_pred HHHHHHHHHHHcCCcEEEEehhHH
Confidence 33444432 4788999998644
No 213
>cd04194 GT8_A4GalT_like A4GalT_like proteins catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The members of this family of glycosyltransferases catalyze the addition of galactose or glucose residues to the lipooligosaccharide (LOS) or lipopolysaccharide (LPS) of the bacterial cell surface. The enzymes exhibit broad substrate specificities. The known functions found in this family include: Alpha-1,4-galactosyltransferase, LOS-alpha-1,3-D-galactosyltransferase, UDP-glucose:(galactosyl) LPS alpha1,2-glucosyltransferase, UDP-galactose: (glucosyl) LPS alpha1,2-galactosyltransferase, and UDP-glucose:(glucosyl) LPS alpha1,2-glucosyltransferase. Alpha-1,4-galactosyltransferase from N. meningitidis adds an alpha-galactose from UDP-Gal (the donor) to a terminal lactose (the acceptor) of the LOS structure of outer membrane. LOSs are virulence factors that enable the organism to evade the immune sys
Probab=32.90 E-value=4.2e+02 Score=24.83 Aligned_cols=87 Identities=15% Similarity=0.017 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHcCCCCCCeeEEE-EEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCC-----C-CCChhH-----HH
Q 041333 110 EVYQLSIGAACGLSWPSDRLIIQ-VLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNR-----K-GYKAGA-----LR 177 (513)
Q Consensus 110 ~~l~~~l~sl~~q~yp~~~i~Ii-V~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~-----~-g~Ka~a-----ln 177 (513)
..+..++.|+.+..-. ..+.|+ +.|+-+++..+.+ ++...+ .+..+++..-+.. . ..+... +-
T Consensus 13 ~~~~~~l~Sl~~~~~~-~~~~~~il~~~is~~~~~~L-~~~~~~---~~~~i~~~~i~~~~~~~~~~~~~~~~~~~y~rl 87 (248)
T cd04194 13 PYLAVTIKSILANNSK-RDYDFYILNDDISEENKKKL-KELLKK---YNSSIEFIKIDNDDFKFFPATTDHISYATYYRL 87 (248)
T ss_pred HHHHHHHHHHHhcCCC-CceEEEEEeCCCCHHHHHHH-HHHHHh---cCCeEEEEEcCHHHHhcCCcccccccHHHHHHH
Confidence 7788899999874321 233344 4445455554433 322221 2455555543211 0 001111 11
Q ss_pred HHHHhcccCCCcEEEEEcCCCCCChH
Q 041333 178 EGMKRGYVKSCDFVVIFDADFQPESD 203 (513)
Q Consensus 178 ~gl~~a~~~~~d~I~~lDaD~~~~pd 203 (513)
...+.- ++.|-++.+|+|.++-.|
T Consensus 88 ~l~~ll--~~~~rvlylD~D~lv~~d 111 (248)
T cd04194 88 LIPDLL--PDYDKVLYLDADIIVLGD 111 (248)
T ss_pred HHHHHh--cccCEEEEEeCCEEecCC
Confidence 111122 358999999999887553
No 214
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=32.22 E-value=76 Score=29.54 Aligned_cols=17 Identities=24% Similarity=0.215 Sum_probs=13.6
Q ss_pred CCCcEEEEEcCCCCCCh
Q 041333 186 KSCDFVVIFDADFQPES 202 (513)
Q Consensus 186 ~~~d~I~~lDaD~~~~p 202 (513)
++.|-++.+|+|+++-.
T Consensus 97 ~~~drilyLD~D~lv~~ 113 (250)
T PF01501_consen 97 PDYDRILYLDADTLVLG 113 (250)
T ss_dssp TTSSEEEEE-TTEEESS
T ss_pred hhcCeEEEEcCCeeeec
Confidence 38999999999988854
No 215
>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism]
Probab=31.44 E-value=5.8e+02 Score=26.69 Aligned_cols=106 Identities=15% Similarity=0.100 Sum_probs=62.5
Q ss_pred cEEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeC-CCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHH
Q 041333 98 MVLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDD-STDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGAL 176 (513)
Q Consensus 98 ~VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dd-s~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~al 176 (513)
.+..+.-+|.+-+.+++.++++-. |.....| .+|. |+++. +...++. .+.-.||.+.......-.++..+
T Consensus 104 ~~a~~~~v~kd~~~verll~aiYh---PqN~yci-hvD~~s~~~f-k~~~~~L----~~cf~NV~v~~k~~~v~~~G~s~ 174 (439)
T KOG0799|consen 104 PAAFLRVVYKDYEQVERLLQAIYH---PQNVYCI-HVDAKSPPEF-RVAMQQL----ASCFPNVIVLPKRESVTYGGHSI 174 (439)
T ss_pred ceEEEEeecccHHHHHHHHHHHhC---CcCcceE-EECCCCCHHH-HHHHHHH----HhcCCceEEeccccceecCCchh
Confidence 578888899999999999988764 2233334 4554 65544 3343333 33457888886444322233333
Q ss_pred HHHHHhc----cc--CCCcEEEEEcCCCCC--ChHHHHHHHHHH
Q 041333 177 REGMKRG----YV--KSCDFVVIFDADFQP--ESDFLTRTIPFL 212 (513)
Q Consensus 177 n~gl~~a----~~--~~~d~I~~lDaD~~~--~pd~L~~l~~~~ 212 (513)
+.+--++ .. .+-+|++.+-+.+.| ..+.+.+....+
T Consensus 175 l~a~l~c~~~Ll~~~~~W~yfinLs~~D~PlkT~~elv~i~~~L 218 (439)
T KOG0799|consen 175 LAAHLNCLADLLKLSGDWDYFINLSNSDYPLKTNDELVRIFKIL 218 (439)
T ss_pred hHHHHHHHHHHHhcCCCCceeeeccCCCcccCCHHHHHHHHHHc
Confidence 3322222 11 246888877766555 677777777776
No 216
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=30.07 E-value=3.9e+02 Score=23.57 Aligned_cols=41 Identities=7% Similarity=0.088 Sum_probs=29.2
Q ss_pred ChhHHHHHHHhcccCCCcEEEEEcCCCCC-ChHHHHHHHHHH
Q 041333 172 KAGALREGMKRGYVKSCDFVVIFDADFQP-ESDFLTRTIPFL 212 (513)
Q Consensus 172 Ka~aln~gl~~a~~~~~d~I~~lDaD~~~-~pd~L~~l~~~~ 212 (513)
-..++-.|++.+...+.|+++++=+|.-. +++.++++....
T Consensus 59 pl~~~~~gl~~~~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~ 100 (178)
T PRK00576 59 PLPATGRGLRAAAEAGARLAFVCAVDMPYLTVELIDDLARPA 100 (178)
T ss_pred cHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCHHHHHHHHHHh
Confidence 44555556654321257999999999644 999999988876
No 217
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=28.89 E-value=3.2e+02 Score=28.76 Aligned_cols=100 Identities=10% Similarity=0.126 Sum_probs=52.6
Q ss_pred EEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCcc-EEEEEcCCCCCCChhHHHHH
Q 041333 101 VQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGIN-IKYEVRDNRKGYKAGALREG 179 (513)
Q Consensus 101 IiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~-v~~~~~~~~~g~Ka~aln~g 179 (513)
-++|.-++...++.+++.+.+.. + .+++| |.... . .. ..++..+++ +.+ ..++..+...| .++|.-.+
T Consensus 25 ~~l~l~g~~~ll~~tl~~l~~~~-~-~~ivi-v~~~~-~--~~-~~~~~l~~~---~~~~~~~i~Ep~~~g-Ta~ai~~a 93 (468)
T TIGR01479 25 QFLALVGDLTMLQQTLKRLAGLP-C-SSPLV-ICNEE-H--RF-IVAEQLREI---GKLASNIILEPVGRN-TAPAIALA 93 (468)
T ss_pred ceeEcCCCCcHHHHHHHHHhcCC-C-cCcEE-ecCHH-H--HH-HHHHHHHHc---CCCcceEEecccccC-chHHHHHH
Confidence 34566676788999999988764 2 33433 43221 1 11 112111222 222 24555555444 45555444
Q ss_pred HHhccc--CCCcEEEEEcCCCCC-ChHHHHHHHHH
Q 041333 180 MKRGYV--KSCDFVVIFDADFQP-ESDFLTRTIPF 211 (513)
Q Consensus 180 l~~a~~--~~~d~I~~lDaD~~~-~pd~L~~l~~~ 211 (513)
...... ...++++++-+|+.+ +++.+.+++..
T Consensus 94 a~~~~~~~~~~~~vlVl~~D~~i~~~~~f~~~l~~ 128 (468)
T TIGR01479 94 ALLAARRNGEDPLLLVLAADHVITDEDAFQAAVKL 128 (468)
T ss_pred HHHHHHHHCCCcEEEEecCceeecCHHHHHHHHHH
Confidence 333211 135689999999766 44556666553
No 218
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=28.77 E-value=4.6e+02 Score=23.98 Aligned_cols=108 Identities=13% Similarity=0.132 Sum_probs=54.0
Q ss_pred CCCcEEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhcc--CccEEEEEcCCCCCCC
Q 041333 95 SYPMVLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASK--GINIKYEVRDNRKGYK 172 (513)
Q Consensus 95 ~~P~VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~--~~~v~~~~~~~~~g~K 172 (513)
..|+ -.+|.-|. ..|...++++.+..- .++.| +... ..+..++..+.. ..+... +..+.++..++..| -
T Consensus 20 ~~pK--~llpi~g~-piI~~~l~~l~~~Gi--~~I~i-v~~~-~~~~i~~~l~~~-~~~~~~~~~~~i~~~~~~~~~~-~ 90 (217)
T cd04197 20 EKPR--CLLPLANV-PLIDYTLEFLALNGV--EEVFV-FCCS-HSDQIKEYIEKS-KWSKPKSSLMIVIIIMSEDCRS-L 90 (217)
T ss_pred CCCc--eeeEECCE-ehHHHHHHHHHHCCC--CeEEE-EeCC-CHHHHHHHHhhc-cccccccCcceEEEEeCCCcCc-c
Confidence 3454 36777777 589999999988643 34444 4443 233333232211 011000 13456555444333 3
Q ss_pred hhHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHHhc
Q 041333 173 AGALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFLVH 214 (513)
Q Consensus 173 a~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~~~ 214 (513)
++++......-. -.|.++++.+|.+.+.| +..++....+
T Consensus 91 ~~al~~~~~~~~--~~~~flv~~gD~i~~~d-l~~~l~~h~~ 129 (217)
T cd04197 91 GDALRDLDAKGL--IRGDFILVSGDVVSNID-LKEILEEHKE 129 (217)
T ss_pred chHHHHHhhccc--cCCCEEEEeCCeeeccC-HHHHHHHHHH
Confidence 445432211110 12446689999887655 5556665533
No 219
>PF11181 YflT: Heat induced stress protein YflT
Probab=28.31 E-value=1.1e+02 Score=24.56 Aligned_cols=32 Identities=16% Similarity=0.241 Sum_probs=25.5
Q ss_pred EEeccCChHHHHHHHHHHHcCCCCCCeeEEEEE
Q 041333 102 QIPMFNEREVYQLSIGAACGLSWPSDRLIIQVL 134 (513)
Q Consensus 102 iIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~ 134 (513)
+|-+|+..+.+...|+.+.++.|..+++.| +.
T Consensus 2 ~Igv~~~~~E~~~~I~~L~~~Gy~~ddI~V-va 33 (103)
T PF11181_consen 2 VIGVYDNEEEALSAIEELKAQGYSEDDIYV-VA 33 (103)
T ss_pred EEEEECCHHHHHHHHHHHHHcCCCcccEEE-EE
Confidence 355677777788899999999999988766 44
No 220
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=27.50 E-value=2e+02 Score=26.96 Aligned_cols=32 Identities=9% Similarity=0.070 Sum_probs=26.3
Q ss_pred EEEeccCCh-HHHHHHHHHHHcCCCCCCeeEEE
Q 041333 101 VQIPMFNER-EVYQLSIGAACGLSWPSDRLIIQ 132 (513)
Q Consensus 101 IiIP~yne~-~~l~~~l~sl~~q~yp~~~i~Ii 132 (513)
|+|.+-+.. .++.+++..+.++.++.+++.|+
T Consensus 4 iLlatlG~sPqVVTETL~aL~~~g~~p~EV~vi 36 (224)
T PF09623_consen 4 ILLATLGTSPQVVTETLYALAQQGEIPDEVHVI 36 (224)
T ss_pred EEEEecCCCchHHHHHHHHHHcCCCCCCEEEEE
Confidence 677777765 89999999999988887887764
No 221
>KOG1971 consensus Lysyl hydroxylase [Posttranslational modification, protein turnover, chaperones]
Probab=27.26 E-value=69 Score=32.61 Aligned_cols=92 Identities=15% Similarity=0.065 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHcCCCCCCeeEEEEEeC--CCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHHhcccCC
Q 041333 110 EVYQLSIGAACGLSWPSDRLIIQVLDD--STDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMKRGYVKS 187 (513)
Q Consensus 110 ~~l~~~l~sl~~q~yp~~~i~IiV~Dd--s~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~~a~~~~ 187 (513)
+.+...++-+..++||.+.....+-.+ +.++..+...++...+ ....+++....... -+.|++.+++.. +
T Consensus 106 ~~~~s~~q~l~~~~Y~~dp~~l~i~n~~~~~~~~~~~~~~~~~~e----~~p~~~v~~~~~~~-~~ea~~~evE~~---r 177 (415)
T KOG1971|consen 106 ELIKSNLQRLLELDYPLDPENLFIPNFEVAHSANIKEFFRRHGSE----YSPGKFVFPMFQPD-FSEARLMEVEHF---R 177 (415)
T ss_pred hhhhhccccchhccCCCCHHHhccccccccchhccHHHHHHhccc----cCCeeEEeeccCcc-HHHHHHHHHHHh---h
Confidence 455555677778899987665545444 3344444344333222 23345554444555 578999999998 6
Q ss_pred CcEEEEEcCCCCC-ChHHHHHHHHHH
Q 041333 188 CDFVVIFDADFQP-ESDFLTRTIPFL 212 (513)
Q Consensus 188 ~d~I~~lDaD~~~-~pd~L~~l~~~~ 212 (513)
+ .+.|+|... .|+.+..+....
T Consensus 178 --~-~~~dad~~i~~P~~~~~li~~~ 200 (415)
T KOG1971|consen 178 --K-FSVDADFVITRPNTLRNLIVLN 200 (415)
T ss_pred --h-cccccceeccCChhHHHHHHHh
Confidence 4 889999766 799888887665
No 222
>PF06866 DUF1256: Protein of unknown function (DUF1256); InterPro: IPR009665 This family consists of several uncharacterised bacterial proteins, which seem to be specific to the orders Clostridia and Bacillales. Family members are typically around 180 residues in length. The function of this family is unknown.
Probab=25.02 E-value=3.1e+02 Score=24.26 Aligned_cols=80 Identities=16% Similarity=0.113 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHcCCCCCCeeEEEEEeC---CCchhHHHHHHHHHHHhhccCcc-E-EEEEcCCCCCCChhHHHHHHHhcc
Q 041333 110 EVYQLSIGAACGLSWPSDRLIIQVLDD---STDLTIKDMVELECQRWASKGIN-I-KYEVRDNRKGYKAGALREGMKRGY 184 (513)
Q Consensus 110 ~~l~~~l~sl~~q~yp~~~i~IiV~Dd---s~D~t~~~l~~~~~~~~~~~~~~-v-~~~~~~~~~g~Ka~aln~gl~~a~ 184 (513)
+.+.+.|.+..... ..++ |+++-+ |+-+..--++-...++ .+.+ + .|-.-+++.. |.|+..-++...
T Consensus 10 ~~l~~~L~~~~~~~--~~~i-v~lCIGTDRstGDsLGPLVGt~L~~---~~~~~~~VyGTL~~PVH--A~NL~e~l~~I~ 81 (163)
T PF06866_consen 10 EKLANFLYSLIPKH--NREI-VFLCIGTDRSTGDSLGPLVGTKLKE---MGFPNFNVYGTLDEPVH--ALNLEETLNEIK 81 (163)
T ss_pred HHHHHHHHHHHhhc--CCCE-EEEEECCCCCccccccchhhHHHHh---cCCCCceEEECCCCCcc--hhhHHHHHHHHH
Confidence 34555555555443 2333 335544 4444443344433333 2333 2 3445555554 567777777653
Q ss_pred c-CCCcEEEEEcCC
Q 041333 185 V-KSCDFVVIFDAD 197 (513)
Q Consensus 185 ~-~~~d~I~~lDaD 197 (513)
. .+..+|+-+||=
T Consensus 82 ~~~~~~~IIAIDAc 95 (163)
T PF06866_consen 82 KKHPNPFIIAIDAC 95 (163)
T ss_pred HHCCCCeEEEEECC
Confidence 2 257889988873
No 223
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=24.88 E-value=3.7e+02 Score=24.03 Aligned_cols=39 Identities=15% Similarity=0.133 Sum_probs=23.8
Q ss_pred HhhccCccEEEEEcCCCCCCChhHHHHHHHhcccCCCcEEEEEcCC
Q 041333 152 RWASKGINIKYEVRDNRKGYKAGALREGMKRGYVKSCDFVVIFDAD 197 (513)
Q Consensus 152 ~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~~a~~~~~d~I~~lDaD 197 (513)
..++.++++..+.- |.....+..-.+.. .|.|....|++
T Consensus 131 ~l~~~~I~v~~Igi----G~~~~~L~~ia~~t---gG~~~~~~~~~ 169 (183)
T cd01453 131 KLKKENIRVSVIGL----SAEMHICKEICKAT---NGTYKVILDET 169 (183)
T ss_pred HHHHcCcEEEEEEe----chHHHHHHHHHHHh---CCeeEeeCCHH
Confidence 34445677766643 32344566666666 89999776653
No 224
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=24.65 E-value=8.1e+02 Score=25.48 Aligned_cols=103 Identities=15% Similarity=0.232 Sum_probs=61.8
Q ss_pred CCCCcEEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCCh
Q 041333 94 SSYPMVLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKA 173 (513)
Q Consensus 94 ~~~P~VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka 173 (513)
+++|+ |+=|.-..+ .++..++++.+.. .+++++ |.-...+.-.+.+ .+..++.+...+++.| -+
T Consensus 18 S~lPK--VLH~vaGkp-Ml~hVi~~a~~l~--~~~i~v-VvGh~ae~V~~~~---------~~~~~v~~v~Q~eqlG-Tg 81 (460)
T COG1207 18 SDLPK--VLHPVAGKP-MLEHVIDAARALG--PDDIVV-VVGHGAEQVREAL---------AERDDVEFVLQEEQLG-TG 81 (460)
T ss_pred CCCcc--cchhccCcc-HHHHHHHHHhhcC--cceEEE-EEcCCHHHHHHHh---------ccccCceEEEecccCC-hH
Confidence 45666 444554444 5677777777654 234544 3333322222211 1123578887887777 68
Q ss_pred hHHHHHHHhcccCCCcEEEEEcCCCC-CChHHHHHHHHHH
Q 041333 174 GALREGMKRGYVKSCDFVVIFDADFQ-PESDFLTRTIPFL 212 (513)
Q Consensus 174 ~aln~gl~~a~~~~~d~I~~lDaD~~-~~pd~L~~l~~~~ 212 (513)
+|...+..+........++++-.|+- +.++.|++++..-
T Consensus 82 HAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~ 121 (460)
T COG1207 82 HAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAH 121 (460)
T ss_pred HHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhh
Confidence 99988887752223335777778864 4899999888765
No 225
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=24.14 E-value=5.7e+02 Score=23.57 Aligned_cols=93 Identities=9% Similarity=0.072 Sum_probs=50.3
Q ss_pred EeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCC--CChhHHHHHH
Q 041333 103 IPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKG--YKAGALREGM 180 (513)
Q Consensus 103 IP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g--~Ka~aln~gl 180 (513)
|-+-++...++..++++.+...+ .++.+++.|+.+-...+ .++ +.+..+......+... .....+...+
T Consensus 4 vl~Sg~Gsn~~al~~~~~~~~l~-~~i~~visn~~~~~~~~-~A~-------~~gIp~~~~~~~~~~~~~~~~~~~~~~l 74 (207)
T PLN02331 4 VFVSGGGSNFRAIHDACLDGRVN-GDVVVVVTNKPGCGGAE-YAR-------ENGIPVLVYPKTKGEPDGLSPDELVDAL 74 (207)
T ss_pred EEEeCCChhHHHHHHHHHcCCCC-eEEEEEEEeCCCChHHH-HHH-------HhCCCEEEeccccCCCcccchHHHHHHH
Confidence 33445666788888887776655 35555566654333333 222 2355554443322111 1122344445
Q ss_pred HhcccCCCcEEEEEcCCCCCChHHHHH
Q 041333 181 KRGYVKSCDFVVIFDADFQPESDFLTR 207 (513)
Q Consensus 181 ~~a~~~~~d~I~~lDaD~~~~pd~L~~ 207 (513)
+.. +.|+++..-=..+++++++..
T Consensus 75 ~~~---~~Dliv~agy~~il~~~~l~~ 98 (207)
T PLN02331 75 RGA---GVDFVLLAGYLKLIPVELVRA 98 (207)
T ss_pred Hhc---CCCEEEEeCcchhCCHHHHhh
Confidence 555 778887777777777766653
No 226
>cd02537 GT8_Glycogenin Glycogenin belongs the GT 8 family and initiates the biosynthesis of glycogen. Glycogenin initiates the biosynthesis of glycogen by incorporating glucose residues through a self-glucosylation reaction at a Tyr residue, and then acts as substrate for chain elongation by glycogen synthase and branching enzyme. It contains a conserved DxD motif and an N-terminal beta-alpha-beta Rossmann-like fold that are common to the nucleotide-binding domains of most glycosyltransferases. The DxD motif is essential for coordination of the catalytic divalent cation, most commonly Mn2+. Glycogenin can be classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. It is placed in glycosyltransferase family 8 which includes lipopolysaccharide glucose and galactose transferases and galactinol synthases.
Probab=23.89 E-value=4.3e+02 Score=24.82 Aligned_cols=17 Identities=35% Similarity=0.321 Sum_probs=14.8
Q ss_pred CCcEEEEEcCCCCCChH
Q 041333 187 SCDFVVIFDADFQPESD 203 (513)
Q Consensus 187 ~~d~I~~lDaD~~~~pd 203 (513)
+.|-++.+|+|+++-.+
T Consensus 89 ~~drvlylD~D~~v~~~ 105 (240)
T cd02537 89 EYDKVVFLDADTLVLRN 105 (240)
T ss_pred ccceEEEEeCCeeEccC
Confidence 78999999999988654
No 227
>cd06432 GT8_HUGT1_C_like The C-terminal domain of HUGT1-like is highly homologous to the GT 8 family. C-terminal domain of glycoprotein glucosyltransferase (UGT). UGT is a large glycoprotein whose C-terminus contains the catalytic activity. This catalytic C-terminal domain is highly homologous to Glycosyltransferase Family 8 (GT 8) and contains the DXD motif that coordinates donor sugar binding, characteristic for Family 8 glycosyltransferases. GT 8 proteins are retaining enzymes based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed. The non-catalytic N-terminal portion of the human UTG1 (HUGT1) has been shown to monitor the protein folding status and activate its glucosyltransferase activity.
Probab=23.25 E-value=6.5e+02 Score=23.87 Aligned_cols=96 Identities=9% Similarity=0.110 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcC--C---C-CCCCh--hHHH-HH
Q 041333 109 REVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRD--N---R-KGYKA--GALR-EG 179 (513)
Q Consensus 109 ~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~--~---~-~g~Ka--~aln-~g 179 (513)
...+..++.|++... . ..+.++|.+++-.++-....++.++++ +..+.++..+ . . ...+. .+.- ..
T Consensus 13 ~~~~~v~l~Sll~nn-~-~~~~fyil~~~is~e~~~~l~~~~~~~---~~~i~~i~i~~~~~~~~~~~~~~~~~~y~rL~ 87 (248)
T cd06432 13 ERFLRIMMLSVMKNT-K-SPVKFWFIKNFLSPQFKEFLPEMAKEY---GFEYELVTYKWPRWLHKQTEKQRIIWGYKILF 87 (248)
T ss_pred HHHHHHHHHHHHHcC-C-CCEEEEEEeCCCCHHHHHHHHHHHHHh---CCceEEEEecChhhhhcccccchhHHHHHHHH
Confidence 367889999998764 2 345566666533333333445555554 3444444332 1 1 11011 1111 11
Q ss_pred HHhcccCCCcEEEEEcCCCCCChHHHHHHHH
Q 041333 180 MKRGYVKSCDFVVIFDADFQPESDFLTRTIP 210 (513)
Q Consensus 180 l~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~ 210 (513)
+......+-|=|+.+|+|.++..| |.++..
T Consensus 88 ~~~lLP~~vdkvLYLD~Dilv~~d-L~eL~~ 117 (248)
T cd06432 88 LDVLFPLNVDKVIFVDADQIVRTD-LKELMD 117 (248)
T ss_pred HHHhhhhccCEEEEEcCCceeccc-HHHHHh
Confidence 121111257899999999988743 444443
No 228
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=22.89 E-value=7.1e+02 Score=24.23 Aligned_cols=17 Identities=6% Similarity=-0.212 Sum_probs=7.0
Q ss_pred ccCChHHHHHHHHHHHc
Q 041333 105 MFNEREVYQLSIGAACG 121 (513)
Q Consensus 105 ~yne~~~l~~~l~sl~~ 121 (513)
+.++...++..+++..+
T Consensus 96 ~Sg~gsnl~al~~~~~~ 112 (286)
T PRK06027 96 VSKEDHCLGDLLWRWRS 112 (286)
T ss_pred EcCCCCCHHHHHHHHHc
Confidence 33334444444444333
No 229
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=22.22 E-value=4.6e+02 Score=26.88 Aligned_cols=107 Identities=16% Similarity=0.265 Sum_probs=57.4
Q ss_pred CCCcEEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEc---CC----
Q 041333 95 SYPMVLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVR---DN---- 167 (513)
Q Consensus 95 ~~P~VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~---~~---- 167 (513)
..|+ -.+|.-|....|...|+++.+... .++.| +.....+ ...+... +.|...+....++.. .+
T Consensus 25 ~~PK--~llPv~gk~plI~~~L~~l~~~Gi--~~i~i-v~~~~~~-~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 95 (407)
T PRK00844 25 DRAK--PAVPFGGSYRLIDFVLSNLVNSGY--LRIYV-LTQYKSH-SLDRHIS---QTWRLSGLLGNYITPVPAQQRLGK 95 (407)
T ss_pred CCcc--cceeeCCcceEhHHHHHHHHHCCC--CEEEE-EeccCHH-HHHHHHH---hCcCccccCCCeEEECCcccCCCC
Confidence 4555 367777765688888988887643 24433 4433222 2222222 222111222333321 11
Q ss_pred --CCCCChhHHHHHHHhcccCCCcEEEEEcCCCCCChHHHHHHHHHH
Q 041333 168 --RKGYKAGALREGMKRGYVKSCDFVVIFDADFQPESDFLTRTIPFL 212 (513)
Q Consensus 168 --~~g~Ka~aln~gl~~a~~~~~d~I~~lDaD~~~~pd~L~~l~~~~ 212 (513)
..| -++|+..+.+.......|+++++.+|.+.+.| +.+++...
T Consensus 96 ~~~lG-ta~al~~a~~~i~~~~~~~~lv~~gD~v~~~d-l~~l~~~h 140 (407)
T PRK00844 96 RWYLG-SADAIYQSLNLIEDEDPDYVVVFGADHVYRMD-PRQMVDFH 140 (407)
T ss_pred CcccC-CHHHHHHHHHHHHhcCCCEEEEecCCEEEcCC-HHHHHHHH
Confidence 233 67888877776522233789999999876554 45556554
No 230
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=22.05 E-value=6.2e+02 Score=23.25 Aligned_cols=101 Identities=15% Similarity=0.115 Sum_probs=49.5
Q ss_pred CChHHHHHHHHHHH---cCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCCCChhHHHHHHHhc
Q 041333 107 NEREVYQLSIGAAC---GLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKGYKAGALREGMKRG 183 (513)
Q Consensus 107 ne~~~l~~~l~sl~---~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g~Ka~aln~gl~~a 183 (513)
|+..++++.++... ..+.| .+++++.|+..++..+ +.+..++. +..+.-..++--.+..-+--..+.. ++-.
T Consensus 84 ~y~~vm~~v~~~y~~~~~~~~P--~~VlFiTDG~~~~~~~-~~~~i~~a-s~~pifwqFVgiG~~~f~fL~kLD~-l~gR 158 (200)
T PF10138_consen 84 NYAPVMEDVLDHYFKREPSDAP--ALVLFITDGGPDDRRA-IEKLIREA-SDEPIFWQFVGIGDSNFGFLEKLDD-LAGR 158 (200)
T ss_pred chHHHHHHHHHHHhhcCCCCCC--eEEEEEecCCccchHH-HHHHHHhc-cCCCeeEEEEEecCCcchHHHHhhc-cCCc
Confidence 55678888888777 33444 4677789986654422 22222222 2333344444322221100111111 1111
Q ss_pred ccCCCcEEEEEcCCCCCChHHHHHHHHHH
Q 041333 184 YVKSCDFVVIFDADFQPESDFLTRTIPFL 212 (513)
Q Consensus 184 ~~~~~d~I~~lDaD~~~~pd~L~~l~~~~ 212 (513)
..++..++.+=|-|.+-+...-++++..|
T Consensus 159 ~vDNa~Ff~~~d~~~lsD~eLy~~LL~Ef 187 (200)
T PF10138_consen 159 VVDNAGFFAIDDIDELSDEELYDRLLAEF 187 (200)
T ss_pred ccCCcCeEecCCcccCCHHHHHHHHHHHH
Confidence 11466776666666555666666666655
No 231
>PF03314 DUF273: Protein of unknown function, DUF273; InterPro: IPR004988 This is a family of proteins of unknown function.
Probab=21.52 E-value=76 Score=29.28 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=22.3
Q ss_pred CCCcEEEEEcCCC-CCChHHHHHHHHHHhcCCCeeEEEe
Q 041333 186 KSCDFVVIFDADF-QPESDFLTRTIPFLVHNPQLALVQA 223 (513)
Q Consensus 186 ~~~d~I~~lDaD~-~~~pd~L~~l~~~~~~~~~v~~V~~ 223 (513)
++.|+|+++|+|. ++.|+- .+..+ -+|+++++--
T Consensus 40 ~~~~~vlflDaDigVvNp~~---~iEef-id~~~Di~fy 74 (222)
T PF03314_consen 40 PEYDWVLFLDADIGVVNPNR---RIEEF-IDEGYDIIFY 74 (222)
T ss_pred ccCCEEEEEcCCceeecCcc---cHHHh-cCCCCcEEEE
Confidence 3789999999995 446652 33334 3677776643
No 232
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=20.71 E-value=6.4e+02 Score=22.85 Aligned_cols=92 Identities=16% Similarity=0.092 Sum_probs=51.7
Q ss_pred eccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEEEcCCCCC--CChhHHHHHHH
Q 041333 104 PMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYEVRDNRKG--YKAGALREGMK 181 (513)
Q Consensus 104 P~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~~~~~~~g--~Ka~aln~gl~ 181 (513)
=+=++...++.+++++.+...+ .++.++|.|.+ |......++ +.+.++..+...+-.. .....+...++
T Consensus 6 l~sg~gs~~~~ll~~~~~~~l~-~~I~~vi~~~~-~~~~~~~A~-------~~gip~~~~~~~~~~~~~~~~~~~~~~l~ 76 (190)
T TIGR00639 6 LISGNGSNLQAIIDACKEGKIP-ASVVLVISNKP-DAYGLERAA-------QAGIPTFVLSLKDFPSREAFDQAIIEELR 76 (190)
T ss_pred EEcCCChhHHHHHHHHHcCCCC-ceEEEEEECCc-cchHHHHHH-------HcCCCEEEECccccCchhhhhHHHHHHHH
Confidence 3345566778888888776654 34555455553 222222222 2356655432221111 01234455566
Q ss_pred hcccCCCcEEEEEcCCCCCChHHHHH
Q 041333 182 RGYVKSCDFVVIFDADFQPESDFLTR 207 (513)
Q Consensus 182 ~a~~~~~d~I~~lDaD~~~~pd~L~~ 207 (513)
.. +.|+++...-..+++++.+..
T Consensus 77 ~~---~~D~iv~~~~~~il~~~~l~~ 99 (190)
T TIGR00639 77 AH---EVDLVVLAGFMRILGPTFLSR 99 (190)
T ss_pred hc---CCCEEEEeCcchhCCHHHHhh
Confidence 65 899999998888888887765
No 233
>PLN00176 galactinol synthase
Probab=20.66 E-value=5.3e+02 Score=25.85 Aligned_cols=17 Identities=18% Similarity=0.260 Sum_probs=14.6
Q ss_pred CCcEEEEEcCCCCCChH
Q 041333 187 SCDFVVIFDADFQPESD 203 (513)
Q Consensus 187 ~~d~I~~lDaD~~~~pd 203 (513)
+.|=++.+|+|.++..+
T Consensus 112 ~ydkvlyLDaD~lv~~n 128 (333)
T PLN00176 112 EYSKMIYLDGDIQVFEN 128 (333)
T ss_pred ccceEEEecCCEEeecC
Confidence 78999999999988543
No 234
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=20.58 E-value=6.3e+02 Score=22.76 Aligned_cols=35 Identities=3% Similarity=-0.091 Sum_probs=27.1
Q ss_pred ChhHHHHHHHhcccCCCcEEEEEcCCCCC-ChHHHHHHH
Q 041333 172 KAGALREGMKRGYVKSCDFVVIFDADFQP-ESDFLTRTI 209 (513)
Q Consensus 172 Ka~aln~gl~~a~~~~~d~I~~lDaD~~~-~pd~L~~l~ 209 (513)
--.++..+++.. +.|+++++=+|.-. +++.++++.
T Consensus 78 pl~gi~~~l~~~---~~~~vlv~~~D~P~i~~~~i~~l~ 113 (196)
T PRK00560 78 PLFGIINAFLTL---QTPEIFFISVDTPFVSFESIKKLC 113 (196)
T ss_pred cHHHHHHHHHhc---CCCeEEEEecCcCcCCHHHHHHHH
Confidence 344666677666 78999999999854 899988874
No 235
>PRK10122 GalU regulator GalF; Provisional
Probab=20.53 E-value=8e+02 Score=23.92 Aligned_cols=108 Identities=12% Similarity=0.174 Sum_probs=61.2
Q ss_pred CCCcEEEEEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHH---------------HHHHhh---cc
Q 041333 95 SYPMVLVQIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVEL---------------ECQRWA---SK 156 (513)
Q Consensus 95 ~~P~VsIiIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~---------------~~~~~~---~~ 156 (513)
..|+- .+|.-+. ..+...++++.+..- .++.| +... ..+..+..... ..+.+. ..
T Consensus 23 ~~PK~--llpi~gk-piI~~~l~~l~~~Gi--~~i~i-v~~~-~~~~i~~~~~~~~~l~~~~~~~~k~~~l~~~~~~~~~ 95 (297)
T PRK10122 23 AIPKE--MLPIVDK-PMIQYIVDEIVAAGI--KEIVL-VTHA-SKNAVENHFDTSYELESLLEQRVKRQLLAEVQSICPP 95 (297)
T ss_pred CCCce--eeEECCE-EHHHHHHHHHHHCCC--CEEEE-EcCC-ChHHHHHHHhcchhHHHHHhhcchhhhHHhhhhccCC
Confidence 34553 6677666 788899999888653 34444 3322 22222211110 000000 12
Q ss_pred CccEEEEEcCCCCCCChhHHHHHHHhcccCCCcEEEEEcCCCCCChH-------HHHHHHHHHh
Q 041333 157 GINIKYEVRDNRKGYKAGALREGMKRGYVKSCDFVVIFDADFQPESD-------FLTRTIPFLV 213 (513)
Q Consensus 157 ~~~v~~~~~~~~~g~Ka~aln~gl~~a~~~~~d~I~~lDaD~~~~pd-------~L~~l~~~~~ 213 (513)
+.++.++..+++.| -++|+-.+.+.. .+.+++++. +|+..+++ .+.+++....
T Consensus 96 ~~~i~~~~q~~~lG-tg~al~~a~~~l--~~~~fvvi~-gD~l~~~~~~~~~~~dl~~li~~h~ 155 (297)
T PRK10122 96 GVTIMNVRQGQPLG-LGHSILCARPAI--GDNPFVVVL-PDVVIDDASADPLRYNLAAMIARFN 155 (297)
T ss_pred CceEEEeecCCcCc-hHHHHHHHHHHc--CCCCEEEEE-CCeeccCccccccchhHHHHHHHHH
Confidence 45677777776666 688988888876 135677666 77766543 4777777653
No 236
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=20.49 E-value=6.6e+02 Score=22.93 Aligned_cols=97 Identities=11% Similarity=0.135 Sum_probs=49.7
Q ss_pred EEeccCChHHHHHHHHHHHcCCCCCCeeEEEEEeCCCchhHHHHHHHHHHHhhccCccEEEE--EcCCCCCCChhHHHHH
Q 041333 102 QIPMFNEREVYQLSIGAACGLSWPSDRLIIQVLDDSTDLTIKDMVELECQRWASKGINIKYE--VRDNRKGYKAGALREG 179 (513)
Q Consensus 102 iIP~yne~~~l~~~l~sl~~q~yp~~~i~IiV~Dds~D~t~~~l~~~~~~~~~~~~~~v~~~--~~~~~~g~Ka~aln~g 179 (513)
.+|.-|. ..+..+++.+.+... .++.| |+....+...+.+.+....++ ..+..+.+. ......| -+.++..+
T Consensus 25 llpv~g~-pli~~~l~~l~~~gi--~~i~v-v~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~G-ta~~l~~~ 98 (216)
T cd02507 25 LLPVANV-PLIDYTLEWLEKAGV--EEVFV-VCCEHSQAIIEHLLKSKWSSL-SSKMIVDVITSDLCESAG-DALRLRDI 98 (216)
T ss_pred cceECCE-EHHHHHHHHHHHCCC--CeEEE-EeCCcHHHHHHHHHhcccccc-cCCceEEEEEccCCCCCc-cHHHHHHH
Confidence 5566665 688889988887542 34444 444333322222221100000 011223333 2233444 56777777
Q ss_pred HHhcccCCCcEEEEEcCCCCCChHHHHHHH
Q 041333 180 MKRGYVKSCDFVVIFDADFQPESDFLTRTI 209 (513)
Q Consensus 180 l~~a~~~~~d~I~~lDaD~~~~pd~L~~l~ 209 (513)
.+.. +.| ++++.+|.+.+.+. ..++
T Consensus 99 ~~~i---~~d-flv~~gD~i~~~~l-~~~l 123 (216)
T cd02507 99 RGLI---RSD-FLLLSCDLVSNIPL-SELL 123 (216)
T ss_pred hhcC---CCC-EEEEeCCEeecCCH-HHHH
Confidence 7665 555 56799998876654 3444
Done!