BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041335
(594 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CVR|A Chain A, Crystal Structure Of The Full Length Ipah3
Length = 571
Score = 75.9 bits (185), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 65/167 (38%), Positives = 86/167 (51%), Gaps = 11/167 (6%)
Query: 163 WDPKEIRRVLKQKRNCAVMEILQEIACL-SSLTGLHLSGNNFESLPAXXXXXXXXXXXXX 221
WD E + + + RN AV +L+E CL + + L L+ N SLP
Sbjct: 33 WDKWEKQALPGENRNEAV-SLLKE--CLINQFSELQLNRLNLSSLPDNLPPQITVLEITQ 89
Query: 222 XXCKMLQSLPELPLCLKSLDLMDCKILQSLPALPLCLESLALTGCNMLRSIPELPLCLKY 281
L SLPELP L+ LD D + L +LP LP L+ L + N L +PELP L+Y
Sbjct: 90 ---NALISLPELPASLEYLDACDNR-LSTLPELPASLKHLDVDN-NQLTXLPELPALLEY 144
Query: 282 LNLEDCNMLRSLPELSLCLQSLNARNCNRLRSLPEIPSCLQELDASV 328
+N D N L LPEL L+ L+ RN N+L LPE+P L+ LD S
Sbjct: 145 INA-DNNQLTXLPELPTSLEVLSVRN-NQLTFLPELPESLEALDVST 189
>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A
Novel E3 Ligase
Length = 622
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 61/150 (40%), Positives = 74/150 (49%), Gaps = 9/150 (6%)
Query: 189 CLSS-LTGLHLSGNNFESLPAXXXXXXXXXXXXXXXCKMLQSLPELPLCLKSLDLMDCKI 247
CL + +T L + NN SLPA L SLP LP L L +
Sbjct: 58 CLPAHITTLVIPDNNLTSLPALPPELRTLEVS----GNQLTSLPVLPPGLLELSIF-SNP 112
Query: 248 LQSLPALPLCLESLALTGCNMLRSIPELPLCLKYLNLEDCNMLRSLPELSLCLQSLNARN 307
L LPALP L L + G N L S+P LP L+ L++ D N L SLP L L L A N
Sbjct: 113 LTHLPALPSGLCKLWIFG-NQLTSLPVLPPGLQELSVSD-NQLASLPALPSELCKLWAYN 170
Query: 308 CNRLRSLPEIPSCLQELDASVLEKLSKPSL 337
N+L SLP +PS LQEL S + S P+L
Sbjct: 171 -NQLTSLPMLPSGLQELSVSDNQLASLPTL 199
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 49/101 (48%), Positives = 58/101 (57%), Gaps = 4/101 (3%)
Query: 227 LQSLPELPLCLKSLDLMDCKILQSLPALPLCLESLALTGCNMLRSIPELPLCLKYLNLED 286
L SLP LP L+ L + D + L SLPALP L L N L S+P LP L+ L++ D
Sbjct: 133 LTSLPVLPPGLQELSVSDNQ-LASLPALPSELCKL-WAYNNQLTSLPMLPSGLQELSVSD 190
Query: 287 CNMLRSLPELSLCLQSLNARNCNRLRSLPEIPSCLQELDAS 327
N L SLP L L L A N NRL SLP +PS L+EL S
Sbjct: 191 -NQLASLPTLPSELYKLWAYN-NRLTSLPALPSGLKELIVS 229
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/138 (39%), Positives = 64/138 (46%), Gaps = 20/138 (14%)
Query: 193 LTGLHLSGNNFESLPAXXXXXXXXXXXXXXXCKM------LQSLPELPLCLKSLDLMDCK 246
L L +S N SLPA CK+ L SLP LP L+ L + D +
Sbjct: 143 LQELSVSDNQLASLPALPSEL----------CKLWAYNNQLTSLPMLPSGLQELSVSDNQ 192
Query: 247 ILQSLPALPLCLESLALTGCNMLRSIPELPLCLKYLNLEDCNMLRSLPELSLCLQSLNAR 306
L SLP LP L L N L S+P LP LK L + N L SLP L L+ L
Sbjct: 193 -LASLPTLPSELYKL-WAYNNRLTSLPALPSGLKEL-IVSGNRLTSLPVLPSELKELMV- 248
Query: 307 NCNRLRSLPEIPSCLQEL 324
+ NRL SLP +PS L L
Sbjct: 249 SGNRLTSLPMLPSGLLSL 266
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 60/104 (57%), Gaps = 6/104 (5%)
Query: 227 LQSLPELP-LCLKSLDLMDCKILQSLPALPLCLESLALTGCNMLRSIPELPLCLKYLNL- 284
L+ LPEL L + D L+ LP LPL LES+ + G N+L +PEL L +L
Sbjct: 185 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESI-VAGNNILEELPEL-QNLPFLTTI 242
Query: 285 -EDCNMLRSLPELSLCLQSLNARNCNRLRSLPEIPSCLQELDAS 327
D N+L++LP+L L++LN R+ N L LPE+P L LD S
Sbjct: 243 YADNNLLKTLPDLPPSLEALNVRD-NYLTDLPELPQSLTFLDVS 285
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/148 (33%), Positives = 75/148 (50%), Gaps = 8/148 (5%)
Query: 181 MEILQEIACLSSLTGLHLSGNNFESLPAXXXXXXXXXXXXXXXCKMLQSLPELP-LCLKS 239
+E L E+ L LT ++ N+ + LP +L+ LPEL L +
Sbjct: 185 LEELPELQNLPFLTAIYADNNSLKKLP----DLPLSLESIVAGNNILEELPELQNLPFLT 240
Query: 240 LDLMDCKILQSLPALPLCLESLALTGCNMLRSIPELPLCLKYLNLEDCNMLRSLPELSLC 299
D +L++LP LP LE+L + N L +PELP L +L++ + N+ L EL
Sbjct: 241 TIYADNNLLKTLPDLPPSLEALNVRD-NYLTDLPELPQSLTFLDVSE-NIFSGLSELPPN 298
Query: 300 LQSLNARNCNRLRSLPEIPSCLQELDAS 327
L LNA + N +RSL ++P L+EL+ S
Sbjct: 299 LYYLNA-SSNEIRSLCDLPPSLEELNVS 325
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 59/98 (60%), Gaps = 6/98 (6%)
Query: 227 LQSLPELPLCLKSLDLMDCKILQSLPALPLCLESLALTGCNMLRSIPELPLCLKYLNLED 286
L SLPELP L+SL + C L LP LP L+SL L N L+++ +LP L+YL + +
Sbjct: 83 LSSLPELPPHLESL-VASCNSLTELPELPQSLKSL-LVDNNNLKALSDLPPLLEYLGVSN 140
Query: 287 CNMLRSLPEL--SLCLQSLNARNCNRLRSLPEIPSCLQ 322
N L LPEL S L+ ++ N N L+ LP++P L+
Sbjct: 141 -NQLEKLPELQNSSFLKIIDVDN-NSLKKLPDLPPSLE 176
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 60/110 (54%), Gaps = 9/110 (8%)
Query: 248 LQSLPALPLCLESLALTGCNMLRSIPELPLCLKYLNLEDCNMLRSLPELSLCLQSLNARN 307
L SLP LP LESL + CN L +PELP LK L L D N L++L +L L+ L N
Sbjct: 83 LSSLPELPPHLESL-VASCNSLTELPELPQSLKSL-LVDNNNLKALSDLPPLLEYLGVSN 140
Query: 308 CNRLRSLPEIPSC----LQELDASVLEKLS--KPSLDLIQWAPGCLESQP 351
N+L LPE+ + + ++D + L+KL PSL+ I LE P
Sbjct: 141 -NQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP 189
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/103 (39%), Positives = 59/103 (57%), Gaps = 4/103 (3%)
Query: 225 KMLQSLPELPLCLKSLDLMDCKILQSLPALPLCLESLALTGCNMLRSIPELPLCLKYLNL 284
+L++LP+LP L++L++ D L LP LP L L ++ N+ + ELP L YLN
Sbjct: 247 NLLKTLPDLPPSLEALNVRD-NYLTDLPELPQSLTFLDVSE-NIFSGLSELPPNLYYLN- 303
Query: 285 EDCNMLRSLPELSLCLQSLNARNCNRLRSLPEIPSCLQELDAS 327
N +RSL +L L+ LN N N+L LP +P L+ L AS
Sbjct: 304 ASSNEIRSLCDLPPSLEELNVSN-NKLIELPALPPRLERLIAS 345
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/96 (42%), Positives = 56/96 (58%), Gaps = 6/96 (6%)
Query: 224 CKMLQSLPELPLCLKSLDLMDCKILQSLPALPLCLESLALTGCNMLRSIPELPLC--LKY 281
C L LPELP LKSL L+D L++L LP LE L ++ N L +PEL LK
Sbjct: 100 CNSLTELPELPQSLKSL-LVDNNNLKALSDLPPLLEYLGVSN-NQLEKLPELQNSSFLKI 157
Query: 282 LNLEDCNMLRSLPELSLCLQSLNARNCNRLRSLPEI 317
+++ D N L+ LP+L L+ + A N N+L LPE+
Sbjct: 158 IDV-DNNSLKKLPDLPPSLEFIAAGN-NQLEELPEL 191
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 10/90 (11%)
Query: 237 LKSLDLMDCKILQSLPA---LPLCLESLALTGCNMLRSIPEL---PLCLKYLNLEDCNML 290
LKSL + + + PA LP LE L L GC LR+ P + LK L L+DC+ L
Sbjct: 208 LKSLKIRNSPLSALGPAIHHLP-KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL 266
Query: 291 RSLP---ELSLCLQSLNARNCNRLRSLPEI 317
+LP L+ L+ R C L LP +
Sbjct: 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSL 296
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,547,875
Number of Sequences: 62578
Number of extensions: 713280
Number of successful extensions: 1528
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1488
Number of HSP's gapped (non-prelim): 27
length of query: 594
length of database: 14,973,337
effective HSP length: 104
effective length of query: 490
effective length of database: 8,465,225
effective search space: 4147960250
effective search space used: 4147960250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)