Query 041335
Match_columns 594
No_of_seqs 498 out of 3982
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 06:05:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041335.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041335hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 1.3E-63 2.9E-68 595.6 41.9 521 1-545 356-1099(1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 1E-33 2.3E-38 323.9 16.4 263 1-265 322-651 (889)
3 PF00931 NB-ARC: NB-ARC domain 99.4 7.4E-14 1.6E-18 143.0 3.9 108 1-108 162-278 (287)
4 PLN03210 Resistant to P. syrin 99.2 6.9E-11 1.5E-15 142.7 10.7 69 299-367 870-948 (1153)
5 PLN00113 leucine-rich repeat r 99.2 6.6E-11 1.4E-15 141.4 10.1 153 184-336 86-253 (968)
6 PLN00113 leucine-rich repeat r 99.1 1.2E-10 2.7E-15 139.0 8.5 149 183-331 156-320 (968)
7 PRK15386 type III secretion pr 99.1 2.2E-10 4.8E-15 120.0 9.2 164 187-366 48-217 (426)
8 PRK15387 E3 ubiquitin-protein 99.1 3.2E-10 7E-15 128.8 9.9 136 192-336 223-358 (788)
9 PRK15387 E3 ubiquitin-protein 99.0 3.5E-10 7.6E-15 128.5 8.5 132 190-329 241-372 (788)
10 KOG0444 Cytoskeletal regulator 99.0 1.8E-10 3.9E-15 122.6 2.7 82 183-266 95-183 (1255)
11 PRK15370 E3 ubiquitin-protein 99.0 1.9E-09 4.1E-14 123.0 10.2 131 192-329 200-335 (754)
12 PRK15370 E3 ubiquitin-protein 98.8 4.2E-09 9.2E-14 120.2 6.9 139 191-337 220-363 (754)
13 KOG0617 Ras suppressor protein 98.7 1.6E-09 3.5E-14 98.6 -0.2 130 183-316 48-190 (264)
14 KOG0444 Cytoskeletal regulator 98.6 4.9E-09 1.1E-13 111.9 -0.3 142 185-330 72-256 (1255)
15 PRK15386 type III secretion pr 98.6 6.1E-08 1.3E-12 101.9 5.9 117 210-333 48-170 (426)
16 KOG4194 Membrane glycoprotein 98.3 7.8E-08 1.7E-12 102.4 -1.0 140 187-330 265-427 (873)
17 KOG0472 Leucine-rich repeat pr 98.3 6.9E-08 1.5E-12 98.7 -3.0 154 179-338 125-293 (565)
18 KOG0472 Leucine-rich repeat pr 98.2 3.2E-08 6.9E-13 101.1 -5.8 131 156-291 35-174 (565)
19 KOG0617 Ras suppressor protein 98.1 2.6E-07 5.6E-12 84.5 -1.8 111 183-295 71-191 (264)
20 KOG4194 Membrane glycoprotein 98.1 2.1E-06 4.5E-11 91.9 4.2 102 187-291 98-211 (873)
21 KOG0618 Serine/threonine phosp 98.1 5.7E-07 1.2E-11 100.7 -0.2 39 235-275 383-425 (1081)
22 KOG0618 Serine/threonine phosp 98.0 3.6E-07 7.7E-12 102.3 -3.2 133 192-329 242-440 (1081)
23 PLN03150 hypothetical protein; 98.0 1.1E-05 2.4E-10 91.5 6.6 82 193-274 420-508 (623)
24 PF14580 LRR_9: Leucine-rich r 97.9 5.2E-06 1.1E-10 78.2 3.0 99 187-289 15-125 (175)
25 PLN03150 hypothetical protein; 97.8 2.6E-05 5.6E-10 88.6 6.1 88 183-270 434-529 (623)
26 PF13855 LRR_8: Leucine rich r 97.7 2.5E-05 5.4E-10 60.2 3.4 55 191-246 1-60 (61)
27 cd00116 LRR_RI Leucine-rich re 97.7 4.3E-06 9.3E-11 86.6 -1.8 144 186-329 76-260 (319)
28 PF12799 LRR_4: Leucine Rich r 97.7 4E-05 8.6E-10 54.9 3.6 41 191-232 1-41 (44)
29 KOG0532 Leucine-rich repeat (L 97.7 3.6E-06 7.7E-11 89.9 -2.6 77 186-265 116-198 (722)
30 KOG0532 Leucine-rich repeat (L 97.7 1.1E-06 2.4E-11 93.7 -6.6 150 183-337 90-251 (722)
31 cd00116 LRR_RI Leucine-rich re 97.6 1.2E-05 2.5E-10 83.4 -1.1 38 188-225 48-92 (319)
32 KOG1259 Nischarin, modulator o 97.5 1.4E-05 3.1E-10 79.2 -0.9 96 191-289 284-386 (490)
33 KOG4658 Apoptotic ATPase [Sign 97.5 9.7E-05 2.1E-09 86.3 5.2 73 172-244 576-651 (889)
34 COG4886 Leucine-rich repeat (L 97.5 4.9E-05 1.1E-09 81.5 2.4 140 186-329 111-265 (394)
35 KOG4237 Extracellular matrix p 97.4 9.3E-06 2E-10 83.4 -3.8 47 186-232 86-133 (498)
36 COG4886 Leucine-rich repeat (L 97.4 5.7E-05 1.2E-09 81.0 2.0 149 183-334 131-292 (394)
37 PF14580 LRR_9: Leucine-rich r 97.3 0.00021 4.6E-09 67.4 4.0 86 181-269 31-126 (175)
38 KOG2120 SCF ubiquitin ligase, 97.1 1.6E-05 3.6E-10 78.8 -6.0 142 187-330 206-374 (419)
39 KOG3207 Beta-tubulin folding c 97.1 6.4E-05 1.4E-09 78.3 -2.1 106 186-291 141-260 (505)
40 KOG1259 Nischarin, modulator o 97.0 0.00012 2.6E-09 72.8 -1.4 103 185-291 301-413 (490)
41 PF13855 LRR_8: Leucine rich r 96.9 0.00088 1.9E-08 51.4 3.6 51 214-266 1-59 (61)
42 KOG3207 Beta-tubulin folding c 96.8 0.00025 5.3E-09 74.1 -0.8 140 188-329 118-281 (505)
43 KOG2120 SCF ubiquitin ligase, 96.7 3.2E-05 6.9E-10 76.9 -7.9 96 192-287 186-296 (419)
44 KOG1859 Leucine-rich repeat pr 96.3 0.00015 3.4E-09 79.7 -5.9 77 186-265 182-263 (1096)
45 KOG1859 Leucine-rich repeat pr 96.0 0.00026 5.6E-09 78.0 -6.3 115 192-309 165-290 (1096)
46 KOG0531 Protein phosphatase 1, 95.9 0.003 6.6E-08 68.3 1.2 105 185-291 89-200 (414)
47 KOG4237 Extracellular matrix p 95.2 0.0066 1.4E-07 63.0 0.8 81 186-267 269-357 (498)
48 PF00560 LRR_1: Leucine Rich R 95.1 0.0089 1.9E-07 35.8 0.7 22 192-213 1-22 (22)
49 PF12799 LRR_4: Leucine Rich r 94.8 0.029 6.3E-07 40.0 3.0 37 214-252 1-40 (44)
50 KOG1909 Ran GTPase-activating 94.7 0.011 2.4E-07 60.4 0.8 139 186-330 87-281 (382)
51 KOG4341 F-box protein containi 94.7 0.0044 9.6E-08 64.6 -2.2 78 257-334 295-387 (483)
52 PRK04841 transcriptional regul 93.6 0.3 6.6E-06 58.2 10.1 126 21-150 206-334 (903)
53 KOG1644 U2-associated snRNP A' 93.6 0.12 2.6E-06 49.3 5.2 53 192-246 43-99 (233)
54 KOG0531 Protein phosphatase 1, 93.5 0.026 5.5E-07 61.1 0.7 117 189-308 70-196 (414)
55 KOG4579 Leucine-rich repeat (L 92.4 0.017 3.8E-07 51.6 -2.1 73 191-265 53-132 (177)
56 PF13504 LRR_7: Leucine rich r 91.9 0.1 2.2E-06 29.1 1.4 16 192-207 2-17 (17)
57 KOG3665 ZYG-1-like serine/thre 90.4 0.14 3.1E-06 58.7 2.0 34 188-222 170-203 (699)
58 KOG1644 U2-associated snRNP A' 90.2 0.6 1.3E-05 44.7 5.5 61 184-245 57-123 (233)
59 KOG4341 F-box protein containi 90.1 0.011 2.4E-07 61.7 -6.5 143 192-334 139-309 (483)
60 KOG3665 ZYG-1-like serine/thre 89.3 0.24 5.1E-06 56.9 2.7 101 189-291 146-264 (699)
61 KOG2982 Uncharacterized conser 88.9 0.22 4.7E-06 50.2 1.7 20 318-337 248-267 (418)
62 PF13504 LRR_7: Leucine rich r 88.7 0.28 6.2E-06 27.3 1.4 16 215-231 2-17 (17)
63 COG5238 RNA1 Ran GTPase-activa 88.4 0.75 1.6E-05 46.0 5.0 48 184-232 85-137 (388)
64 KOG4579 Leucine-rich repeat (L 87.8 0.021 4.6E-07 51.0 -5.4 72 192-265 28-109 (177)
65 PF00560 LRR_1: Leucine Rich R 87.6 0.24 5.2E-06 29.5 0.7 9 237-245 2-10 (22)
66 KOG2739 Leucine-rich acidic nu 86.7 0.45 9.8E-06 47.1 2.4 78 192-270 44-130 (260)
67 KOG2739 Leucine-rich acidic nu 86.5 0.48 1E-05 46.9 2.5 78 212-290 41-129 (260)
68 KOG1909 Ran GTPase-activating 86.5 0.23 5E-06 51.1 0.3 103 187-290 153-283 (382)
69 COG5238 RNA1 Ran GTPase-activa 84.0 1 2.3E-05 45.0 3.5 15 190-204 29-43 (388)
70 smart00370 LRR Leucine-rich re 83.3 0.68 1.5E-05 28.6 1.3 20 190-209 1-20 (26)
71 smart00369 LRR_TYP Leucine-ric 83.3 0.68 1.5E-05 28.6 1.3 20 190-209 1-20 (26)
72 KOG1947 Leucine rich repeat pr 82.4 0.23 4.9E-06 54.2 -2.1 101 190-290 187-308 (482)
73 KOG2982 Uncharacterized conser 78.1 0.49 1.1E-05 47.8 -1.0 37 187-223 93-130 (418)
74 KOG1947 Leucine rich repeat pr 74.2 0.67 1.5E-05 50.5 -1.4 101 211-311 185-308 (482)
75 KOG2123 Uncharacterized conser 71.6 0.24 5.3E-06 49.5 -5.0 35 189-224 39-73 (388)
76 PF13306 LRR_5: Leucine rich r 67.9 20 0.00043 31.0 7.0 73 187-264 8-89 (129)
77 smart00364 LRR_BAC Leucine-ric 63.9 3.9 8.5E-05 25.6 1.0 17 192-208 3-19 (26)
78 KOG2123 Uncharacterized conser 58.6 0.8 1.7E-05 45.9 -4.1 91 190-283 18-123 (388)
79 smart00367 LRR_CC Leucine-rich 55.1 8.4 0.00018 23.7 1.5 15 214-228 2-16 (26)
80 PRK00080 ruvB Holliday junctio 46.1 27 0.00059 36.3 4.6 102 21-126 203-310 (328)
81 KOG3864 Uncharacterized conser 44.2 6.1 0.00013 38.0 -0.6 14 257-270 126-139 (221)
82 TIGR00635 ruvB Holliday juncti 39.2 66 0.0014 32.8 6.2 101 21-126 182-289 (305)
83 PF13306 LRR_5: Leucine rich r 37.5 78 0.0017 27.2 5.5 74 186-264 30-111 (129)
84 PF13516 LRR_6: Leucine Rich r 35.1 26 0.00056 20.9 1.4 12 214-225 2-13 (24)
85 smart00365 LRR_SD22 Leucine-ri 33.9 26 0.00056 21.9 1.3 14 191-204 2-15 (26)
86 KOG3864 Uncharacterized conser 30.9 19 0.00041 34.7 0.4 15 257-271 152-166 (221)
87 KOG3763 mRNA export factor TAP 30.5 28 0.00061 38.5 1.7 61 212-273 216-287 (585)
88 COG3899 Predicted ATPase [Gene 30.1 1.1E+02 0.0025 36.3 6.8 128 19-148 239-386 (849)
89 PF13730 HTH_36: Helix-turn-he 25.4 1.2E+02 0.0026 22.0 3.9 46 78-123 2-55 (55)
90 smart00368 LRR_RI Leucine rich 24.3 50 0.0011 20.7 1.4 14 277-290 2-15 (28)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.3e-63 Score=595.56 Aligned_cols=521 Identities=29% Similarity=0.425 Sum_probs=355.7
Q ss_pred CHhHHhhhhcCCCCCChhHHHHHHHHHHHhCCChHHHHHHHccCC--CHHHHHHHHHHhhhhcCCChhhHHHHHHHhhcC
Q 041335 1 AFEHFCNFAFKENHCPEDFKRDSRRVVKYADGNPLVLKVLGSSLK--RKSHWGNVLDDLNRICESDIHNIYDILKISFNE 78 (594)
Q Consensus 1 a~~LF~~~AF~~~~~~~~~~~l~~~iv~~c~GlPLAlkvlgs~L~--~~~~W~~~l~~l~~~~~~~i~~~~~~L~~Syd~ 78 (594)
||+||+++||++..+++++++++++||++|+|+||||+++|+.|+ +..+|+++++++++.++.+| .++|++|||+
T Consensus 356 a~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I---~~~L~~SYd~ 432 (1153)
T PLN03210 356 ALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKI---EKTLRVSYDG 432 (1153)
T ss_pred HHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHH---HHHHHHhhhc
Confidence 799999999999888899999999999999999999999999999 88999999999999888777 9999999999
Q ss_pred CCH-hHHhHhhhhccccCCCChhHHHHHhhh---hhhhhhhHHhhcCCceecccCCCCeEEecHHHHHHHHHHHhhcccc
Q 041335 79 LTP-RVKSIFLDIACFFEGEDKDFLARILDD---SESDGLDVLIDKSLISISEKWADKLLQMHDILQEMGREIVRQESEK 154 (594)
Q Consensus 79 L~~-~~K~~Fl~~a~Fp~~~~~~~v~~~l~~---~~~~~i~~Lv~~sli~~~~~~~~~~~~mHdLl~~~~~~i~~~e~~~ 154 (594)
|++ .+|.||+||||||.+++++++..++.+ .++.+++.|++||||++. .++++||||+|+||++|+++++ .
T Consensus 433 L~~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~----~~~~~MHdLl~~~~r~i~~~~~-~ 507 (1153)
T PLN03210 433 LNNKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVR----EDIVEMHSLLQEMGKEIVRAQS-N 507 (1153)
T ss_pred cCccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEc----CCeEEhhhHHHHHHHHHHHhhc-C
Confidence 986 599999999999999999999998887 667789999999999987 6789999999999999999998 7
Q ss_pred CCCCceecCCchhHHHHHhccCccceee--------------------------------------------ecccCcCC
Q 041335 155 QPGKRSRLWDPKEIRRVLKQKRNCAVME--------------------------------------------ILQEIACL 190 (594)
Q Consensus 155 ~~~~~~~l~~~~~i~~vl~~~~~~~~i~--------------------------------------------~l~~l~~L 190 (594)
+|++++++|.++++++|+..++|+..++ +++++..+
T Consensus 508 ~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~l 587 (1153)
T PLN03210 508 EPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYL 587 (1153)
T ss_pred CCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhc
Confidence 8999999999999999999988877654 11233445
Q ss_pred C-CccEEEEeCCCCCccCccc----------------------cCCCCCcEEEccCCCCCccCCccc--ccccEEEeecC
Q 041335 191 S-SLTGLHLSGNNFESLPASI----------------------KQLSQLSSLDLKDCKMLQSLPELP--LCLKSLDLMDC 245 (594)
Q Consensus 191 ~-~L~~L~l~~~~l~~lP~~~----------------------~~l~~L~~L~Ls~c~~l~~lP~i~--~~L~~L~L~~c 245 (594)
| +||+|+|.+|+++.+|..| ..+++|+.|+|++|..++.+|.+. ++|+.|+|++|
T Consensus 588 p~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c 667 (1153)
T PLN03210 588 PPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDC 667 (1153)
T ss_pred CcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCC
Confidence 5 6888888888877777544 456677777777766666666632 56666666666
Q ss_pred CCCcccCCCCC---CccEEEeeCCCCCCcCCCC--CCCccEEeeecCCC-------------------------------
Q 041335 246 KILQSLPALPL---CLESLALTGCNMLRSIPEL--PLCLKYLNLEDCNM------------------------------- 289 (594)
Q Consensus 246 ~~l~~lp~~~~---~L~~L~Ls~c~~l~~lp~~--~~~L~~L~Ls~c~~------------------------------- 289 (594)
..+..+|..+. +|+.|++++|+.++.+|.. +++|+.|+|++|..
T Consensus 668 ~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~ 747 (1153)
T PLN03210 668 SSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLE 747 (1153)
T ss_pred CCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCcccccccccccc
Confidence 66666665544 5555555555555555532 23344444444322
Q ss_pred -------------------------------------------CCCchhhhc---ccccccccccccccccCcc--cccc
Q 041335 290 -------------------------------------------LRSLPELSL---CLQSLNARNCNRLRSLPEI--PSCL 321 (594)
Q Consensus 290 -------------------------------------------~~~L~~l~~---~L~~L~L~~c~~L~~lp~l--~~sL 321 (594)
.+.+|.... +|+.|+|++|+.++.+|.. +++|
T Consensus 748 ~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL 827 (1153)
T PLN03210 748 NLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESL 827 (1153)
T ss_pred ccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCcccc
Confidence 222222111 4666777777777777654 5667
Q ss_pred cccccccccccCCCCcccccccCCC-----CC------------------------CC-------C--ceeeccCccccc
Q 041335 322 QELDASVLEKLSKPSLDLIQWAPGC-----LE------------------------SQ-------P--IYFGFTKCLKLN 363 (594)
Q Consensus 322 ~~L~~~~c~~L~~~~~~~~~~~~~~-----~~------------------------~~-------~--~~l~~~nC~~L~ 363 (594)
+.|++++|..|+.++.....+..+. +. .. + ..+.|.+|.+|.
T Consensus 828 ~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 828 ESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred CEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 7777777766665543211111000 00 00 0 023455666554
Q ss_pred hhhhhhHHHHHHHHHH-----HH---HHHHhhhhhh---hhhhhccccccceEEEecCCCCCCCccCCCCCceEE-EECC
Q 041335 364 GKANNKILADSLLIIR-----HM---AIASLRLGYE---KAINEKISELRGSLIVLPGGEIPDWFSHQNSGSSIC-IQLP 431 (594)
Q Consensus 364 ~~~~~~i~~~~~~~~~-----~~---~~~~l~~~~~---~~~~~~~~~~~~~~~~~PG~~IP~Wf~~q~~g~sv~-i~lp 431 (594)
...+...-.... .+. .. ....+..++. ....+.. .....+++||.++|+||.||+.|++++ |.+|
T Consensus 908 ~~~l~~~~~~~~-~~~~n~~~~~p~~~~l~f~nC~~L~~~a~l~~~--~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~ 984 (1153)
T PLN03210 908 EASWNGSPSEVA-MATDNIHSKLPSTVCINFINCFNLDQEALLQQQ--SIFKQLILSGEEVPSYFTHRTTGASLTNIPLL 984 (1153)
T ss_pred cccCCCCchhhh-hhcccccccCCchhccccccccCCCchhhhccc--ccceEEECCCccCchhccCCcccceeeeeccC
Confidence 332221100000 000 00 0000000000 0000000 022357899999999999999999999 9999
Q ss_pred CCCCCCCceeEEEEEEcccCCCCCCc-eeeEEeeeEEeeccccccccceeeeeeeecCCCCCCCeEEEeeecCCcc----
Q 041335 432 PHSFCRNLIGFAYCAVPDLKQGYSDC-FRYFYVKCQFELEIKTLSETKHVDLGFRVRTKYIYSDHVILGFKPCLNV---- 506 (594)
Q Consensus 432 ~~~~~~~~~gfa~c~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdH~~l~y~~~~~~---- 506 (594)
+.|++..|.||++|+|+++....... ...+.|.|+|++.+|+... ....+|+|+.|..+..+
T Consensus 985 ~~~~~~~~~~f~~c~v~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~l~~~~ 1051 (1153)
T PLN03210 985 HISPCQPFFRFRACAVVDSESFFIISVSFDIQVCCRFIDRLGNHFD-------------SPYQPHVFSVTKKGSHLVIFD 1051 (1153)
T ss_pred CcccCCCccceEEEEEEecCccccCCCceeEEEEEEEECCCCCccc-------------cCCCceeEeeeccccceEEec
Confidence 99998899999999999887653322 2478899999988875321 12345555444432111
Q ss_pred -------CCC--CCccCcccEEEEEEEecCCceEEEEeecEEEecCCC
Q 041335 507 -------GFP--DGYHHTTATFKFFAECNLKGYKIKRCGVCPVYANPS 545 (594)
Q Consensus 507 -------~~~--~~~~~~~~~~~f~~~~~~~~~~vk~CGv~lvy~~~~ 545 (594)
+.. .....+.+.|+|.+.......+||+||||++|+++.
T Consensus 1052 ~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~cg~~~~~~~~~ 1099 (1153)
T PLN03210 1052 CCFPLNEDNAPLAELNYDHVDIQFRLTNKNSQLKLKGCGIRLSEDDSS 1099 (1153)
T ss_pred ccccccccccchhccCCceeeEEEEEecCCCCeEEEeeeEEEeccCCC
Confidence 000 011233566888886655557999999999997665
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=1e-33 Score=323.90 Aligned_cols=263 Identities=29% Similarity=0.371 Sum_probs=196.5
Q ss_pred CHhHHhhhhcCCC-CCChhHHHHHHHHHHHhCCChHHHHHHHccCC---CHHHHHHHHHHhhhh-cCC---ChhhHHHHH
Q 041335 1 AFEHFCNFAFKEN-HCPEDFKRDSRRVVKYADGNPLVLKVLGSSLK---RKSHWGNVLDDLNRI-CES---DIHNIYDIL 72 (594)
Q Consensus 1 a~~LF~~~AF~~~-~~~~~~~~l~~~iv~~c~GlPLAlkvlgs~L~---~~~~W~~~l~~l~~~-~~~---~i~~~~~~L 72 (594)
||.||+++||... ...++++++|++||++|+|||||++|+|+.|+ +.++|+.+.+.+++. .+. ..+.+..+|
T Consensus 322 aW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iL 401 (889)
T KOG4658|consen 322 AWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPIL 401 (889)
T ss_pred cHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhh
Confidence 8999999999874 44456999999999999999999999999999 788999999999876 222 235679999
Q ss_pred HHhhcCCCHhHHhHhhhhccccCCCC--hhHHHHHhhh---------------hhhhhhhHHhhcCCceecccC-CCCeE
Q 041335 73 KISFNELTPRVKSIFLDIACFFEGED--KDFLARILDD---------------SESDGLDVLIDKSLISISEKW-ADKLL 134 (594)
Q Consensus 73 ~~Syd~L~~~~K~~Fl~~a~Fp~~~~--~~~v~~~l~~---------------~~~~~i~~Lv~~sli~~~~~~-~~~~~ 134 (594)
++|||.|+++.|.||||||.||+|++ ++.++..|++ .+..++.+|+.++|+...+.. ....+
T Consensus 402 klSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~ 481 (889)
T KOG4658|consen 402 KLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETV 481 (889)
T ss_pred hccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEE
Confidence 99999999889999999999999995 5789999987 466789999999999987521 13679
Q ss_pred EecHHHHHHHHHHHh-----hccc-cCCC-------------Cceec-CCchhHHHHHhccCccceee---ecc------
Q 041335 135 QMHDILQEMGREIVR-----QESE-KQPG-------------KRSRL-WDPKEIRRVLKQKRNCAVME---ILQ------ 185 (594)
Q Consensus 135 ~mHdLl~~~~~~i~~-----~e~~-~~~~-------------~~~~l-~~~~~i~~vl~~~~~~~~i~---~l~------ 185 (594)
+|||++||||.+++. ++.. ...+ ..++. +...++.++....... .+. +..
T Consensus 482 kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~-~L~tLll~~n~~~l~ 560 (889)
T KOG4658|consen 482 KMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENP-KLRTLLLQRNSDWLL 560 (889)
T ss_pred EeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCC-ccceEEEeecchhhh
Confidence 999999999999998 3321 1111 00111 1111222221111111 111 111
Q ss_pred -----cCcCCCCccEEEEeCC-CCCccCccccCCCCCcEEEccCCCCCccCCc-cc--ccccEEEeecCCCCcccCCCCC
Q 041335 186 -----EIACLSSLTGLHLSGN-NFESLPASIKQLSQLSSLDLKDCKMLQSLPE-LP--LCLKSLDLMDCKILQSLPALPL 256 (594)
Q Consensus 186 -----~l~~L~~L~~L~l~~~-~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i~--~~L~~L~L~~c~~l~~lp~~~~ 256 (594)
.|..+|.|++||+++| .+..+|+.++.|-+|++|+|++ +.+..+|. +. .+|.+|++..+..+..+|....
T Consensus 561 ~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~ 639 (889)
T KOG4658|consen 561 EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILL 639 (889)
T ss_pred hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhh
Confidence 1677888999999876 4778899999999999999986 45888887 55 5888888888887777754433
Q ss_pred ---CccEEEeeC
Q 041335 257 ---CLESLALTG 265 (594)
Q Consensus 257 ---~L~~L~Ls~ 265 (594)
+|++|.+..
T Consensus 640 ~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 640 ELQSLRVLRLPR 651 (889)
T ss_pred hcccccEEEeec
Confidence 788887765
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.42 E-value=7.4e-14 Score=143.04 Aligned_cols=108 Identities=26% Similarity=0.476 Sum_probs=92.1
Q ss_pred CHhHHhhhhcCCC-CCChhHHHHHHHHHHHhCCChHHHHHHHccCC---CHHHHHHHHHHhhhhcCC---ChhhHHHHHH
Q 041335 1 AFEHFCNFAFKEN-HCPEDFKRDSRRVVKYADGNPLVLKVLGSSLK---RKSHWGNVLDDLNRICES---DIHNIYDILK 73 (594)
Q Consensus 1 a~~LF~~~AF~~~-~~~~~~~~l~~~iv~~c~GlPLAlkvlgs~L~---~~~~W~~~l~~l~~~~~~---~i~~~~~~L~ 73 (594)
|++||++.|+... ...+.+.+++++|+++|+|+||||+++|++|+ +..+|+.+++++.+.... ....+..++.
T Consensus 162 a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~ 241 (287)
T PF00931_consen 162 ALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALE 241 (287)
T ss_dssp HHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccce
Confidence 6899999999876 55677789999999999999999999999996 788999999998876532 2356799999
Q ss_pred HhhcCCCHhHHhHhhhhccccCCCC--hhHHHHHhhh
Q 041335 74 ISFNELTPRVKSIFLDIACFFEGED--KDFLARILDD 108 (594)
Q Consensus 74 ~Syd~L~~~~K~~Fl~~a~Fp~~~~--~~~v~~~l~~ 108 (594)
+||+.|+++.|+||+|||+||.++. ++.++++|.+
T Consensus 242 ~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~ 278 (287)
T PF00931_consen 242 LSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVA 278 (287)
T ss_dssp HHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT
T ss_pred echhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHH
Confidence 9999999999999999999999985 6899999976
No 4
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.17 E-value=6.9e-11 Score=142.70 Aligned_cols=69 Identities=22% Similarity=0.302 Sum_probs=38.9
Q ss_pred ccccccccccccccccCcc---cccccccccccccccCCCCcccccc-----cCCCCCCCC--ceeeccCccccchhhh
Q 041335 299 CLQSLNARNCNRLRSLPEI---PSCLQELDASVLEKLSKPSLDLIQW-----APGCLESQP--IYFGFTKCLKLNGKAN 367 (594)
Q Consensus 299 ~L~~L~L~~c~~L~~lp~l---~~sL~~L~~~~c~~L~~~~~~~~~~-----~~~~~~~~~--~~l~~~nC~~L~~~~~ 367 (594)
+|+.|+|++|++++.+|.. +++|+.|++++|.+|+.++...... ........+ ..+.|.||++|++.++
T Consensus 870 ~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~~a~ 948 (1153)
T PLN03210 870 NLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQEAL 948 (1153)
T ss_pred CCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCchhh
Confidence 5666666677777766654 3445556777777776654431110 000111111 1457899999998764
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.16 E-value=6.6e-11 Score=141.42 Aligned_cols=153 Identities=22% Similarity=0.253 Sum_probs=113.3
Q ss_pred cccCcCCCCccEEEEeCCCCC-ccCcccc-CCCCCcEEEccCCCCCccCCc-ccccccEEEeecCCCCcccCCCCC---C
Q 041335 184 LQEIACLSSLTGLHLSGNNFE-SLPASIK-QLSQLSSLDLKDCKMLQSLPE-LPLCLKSLDLMDCKILQSLPALPL---C 257 (594)
Q Consensus 184 l~~l~~L~~L~~L~l~~~~l~-~lP~~~~-~l~~L~~L~Ls~c~~l~~lP~-i~~~L~~L~L~~c~~l~~lp~~~~---~ 257 (594)
+..+..+++|++|++++|.+. .+|..+. .+++|++|+|++|...+.+|. ..++|+.|+|++|.....+|..++ +
T Consensus 86 ~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~ 165 (968)
T PLN00113 86 SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSS 165 (968)
T ss_pred ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCC
Confidence 345778899999999999987 7887654 889999999998876667776 456888888888876667777666 7
Q ss_pred ccEEEeeCCCCCCcCCCC---CCCccEEeeecCCCCCCchhhhc---ccccccccccccccccCcc---ccccccccccc
Q 041335 258 LESLALTGCNMLRSIPEL---PLCLKYLNLEDCNMLRSLPELSL---CLQSLNARNCNRLRSLPEI---PSCLQELDASV 328 (594)
Q Consensus 258 L~~L~Ls~c~~l~~lp~~---~~~L~~L~Ls~c~~~~~L~~l~~---~L~~L~L~~c~~L~~lp~l---~~sL~~L~~~~ 328 (594)
|++|+|++|...+.+|.. +++|+.|+|++|.+.+.+|.... +|+.|+|++|+..+.+|.. .++|++|++++
T Consensus 166 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 245 (968)
T PLN00113 166 LKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVY 245 (968)
T ss_pred CCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcC
Confidence 888888888777777754 46788888888887776664332 6777777777666666653 56677777777
Q ss_pred ccccCCCC
Q 041335 329 LEKLSKPS 336 (594)
Q Consensus 329 c~~L~~~~ 336 (594)
|.....++
T Consensus 246 n~l~~~~p 253 (968)
T PLN00113 246 NNLTGPIP 253 (968)
T ss_pred ceeccccC
Confidence 65444443
No 6
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.10 E-value=1.2e-10 Score=139.04 Aligned_cols=149 Identities=26% Similarity=0.291 Sum_probs=83.7
Q ss_pred ecccCcCCCCccEEEEeCCCCC-ccCccccCCCCCcEEEccCCCCCccCCc-cc--ccccEEEeecCCCCcccCCCCC--
Q 041335 183 ILQEIACLSSLTGLHLSGNNFE-SLPASIKQLSQLSSLDLKDCKMLQSLPE-LP--LCLKSLDLMDCKILQSLPALPL-- 256 (594)
Q Consensus 183 ~l~~l~~L~~L~~L~l~~~~l~-~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i~--~~L~~L~L~~c~~l~~lp~~~~-- 256 (594)
.+..++.+++|++|++++|.+. .+|..++++++|++|+|++|.....+|. +. ++|+.|++++|.....+|..++
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l 235 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGL 235 (968)
T ss_pred CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcC
Confidence 3445666666666666666654 5566666666666666666655555555 33 4666666666665555665544
Q ss_pred -CccEEEeeCCCCCCcCCCC---CCCccEEeeecCCCCCCchhhhc---ccccccccccccccccCcc---ccccccccc
Q 041335 257 -CLESLALTGCNMLRSIPEL---PLCLKYLNLEDCNMLRSLPELSL---CLQSLNARNCNRLRSLPEI---PSCLQELDA 326 (594)
Q Consensus 257 -~L~~L~Ls~c~~l~~lp~~---~~~L~~L~Ls~c~~~~~L~~l~~---~L~~L~L~~c~~L~~lp~l---~~sL~~L~~ 326 (594)
+|++|+|++|...+.+|.. +++|+.|+|++|.+.+.+|.... +|+.|+|++|...+.+|.. +++|+.|++
T Consensus 236 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 315 (968)
T PLN00113 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL 315 (968)
T ss_pred CCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEEC
Confidence 5666666666555555533 34566666666655554443221 4555566655544445443 344555555
Q ss_pred ccccc
Q 041335 327 SVLEK 331 (594)
Q Consensus 327 ~~c~~ 331 (594)
++|..
T Consensus 316 ~~n~~ 320 (968)
T PLN00113 316 FSNNF 320 (968)
T ss_pred CCCcc
Confidence 55443
No 7
>PRK15386 type III secretion protein GogB; Provisional
Probab=99.10 E-value=2.2e-10 Score=120.05 Aligned_cols=164 Identities=21% Similarity=0.371 Sum_probs=119.2
Q ss_pred CcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc-ccccccEEEeecCCCCcccCCCCCCccEEEeeC
Q 041335 187 IACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE-LPLCLKSLDLMDCKILQSLPALPLCLESLALTG 265 (594)
Q Consensus 187 l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i~~~L~~L~L~~c~~l~~lp~~~~~L~~L~Ls~ 265 (594)
+..+.+++.|++++|.++++|. -..+|+.|.+++|..+..+|. ++++|+.|++++|..+..+|.. |+.|.+++
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP~s---Le~L~L~~ 121 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLPES---VRSLEIKG 121 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccccc---cceEEeCC
Confidence 4456889999999999999982 234799999999999999998 8889999999999888888874 77788864
Q ss_pred CCCCCcCCCCCCCccEEeeecCCCC--CCchh-hhcccccccccccccccccCcccccccccccccc--cccCCCCcccc
Q 041335 266 CNMLRSIPELPLCLKYLNLEDCNML--RSLPE-LSLCLQSLNARNCNRLRSLPEIPSCLQELDASVL--EKLSKPSLDLI 340 (594)
Q Consensus 266 c~~l~~lp~~~~~L~~L~Ls~c~~~--~~L~~-l~~~L~~L~L~~c~~L~~lp~l~~sL~~L~~~~c--~~L~~~~~~~~ 340 (594)
..+..++..|++|+.|.+.+++.. ..++. +..+|+.|.+++|..+...+.+|.+|+.|.++.+ .+++.....
T Consensus 122 -n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n~~~sLeI~~~s-- 198 (426)
T PRK15386 122 -SATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLHIEQKTTWNISFEG-- 198 (426)
T ss_pred -CCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCcccccccCcEEEecccccccccCcccc--
Confidence 555556667778899988654322 12221 2238999999999977543457999999998764 333322211
Q ss_pred cccCCCCCCCCceeeccCccccchhh
Q 041335 341 QWAPGCLESQPIYFGFTKCLKLNGKA 366 (594)
Q Consensus 341 ~~~~~~~~~~~~~l~~~nC~~L~~~~ 366 (594)
+. .+. .+.|.+|.+++.++
T Consensus 199 -LP----~nl--~L~f~n~lkL~~~~ 217 (426)
T PRK15386 199 -FP----DGL--DIDLQNSVLLSPDV 217 (426)
T ss_pred -cc----ccc--EechhhhcccCHHH
Confidence 11 111 67888998887543
No 8
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.08 E-value=3.2e-10 Score=128.75 Aligned_cols=136 Identities=40% Similarity=0.517 Sum_probs=103.9
Q ss_pred CccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCcccccccEEEeecCCCCcccCCCCCCccEEEeeCCCCCCc
Q 041335 192 SLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPELPLCLKSLDLMDCKILQSLPALPLCLESLALTGCNMLRS 271 (594)
Q Consensus 192 ~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~i~~~L~~L~L~~c~~l~~lp~~~~~L~~L~Ls~c~~l~~ 271 (594)
+|+.|++.+|+++.+|.. +++|++|+|++| .++.+|..+++|+.|++++|. +..+|....+|+.|+|++| .+..
T Consensus 223 ~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N-~LtsLP~lp~sL~~L~Ls~N~-L~~Lp~lp~~L~~L~Ls~N-~Lt~ 296 (788)
T PRK15387 223 HITTLVIPDNNLTSLPAL---PPELRTLEVSGN-QLTSLPVLPPGLLELSIFSNP-LTHLPALPSGLCKLWIFGN-QLTS 296 (788)
T ss_pred CCCEEEccCCcCCCCCCC---CCCCcEEEecCC-ccCcccCcccccceeeccCCc-hhhhhhchhhcCEEECcCC-cccc
Confidence 789999999999988853 578999999976 577888777788888888876 6777775558888888885 5677
Q ss_pred CCCCCCCccEEeeecCCCCCCchhhhcccccccccccccccccCcccccccccccccccccCCCC
Q 041335 272 IPELPLCLKYLNLEDCNMLRSLPELSLCLQSLNARNCNRLRSLPEIPSCLQELDASVLEKLSKPS 336 (594)
Q Consensus 272 lp~~~~~L~~L~Ls~c~~~~~L~~l~~~L~~L~L~~c~~L~~lp~l~~sL~~L~~~~c~~L~~~~ 336 (594)
+|..+++|+.|+|++|.+.+ +|.+..+|+.|++++ +.++.+|.+|.+|+.|+++++ .|+.+|
T Consensus 297 LP~~p~~L~~LdLS~N~L~~-Lp~lp~~L~~L~Ls~-N~L~~LP~lp~~Lq~LdLS~N-~Ls~LP 358 (788)
T PRK15387 297 LPVLPPGLQELSVSDNQLAS-LPALPSELCKLWAYN-NQLTSLPTLPSGLQELSVSDN-QLASLP 358 (788)
T ss_pred ccccccccceeECCCCcccc-CCCCccccccccccc-CccccccccccccceEecCCC-ccCCCC
Confidence 88878888888888886664 555444677777777 456677777777888888764 455554
No 9
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.04 E-value=3.5e-10 Score=128.48 Aligned_cols=132 Identities=37% Similarity=0.450 Sum_probs=88.7
Q ss_pred CCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCcccccccEEEeecCCCCcccCCCCCCccEEEeeCCCCC
Q 041335 190 LSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPELPLCLKSLDLMDCKILQSLPALPLCLESLALTGCNML 269 (594)
Q Consensus 190 L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~i~~~L~~L~L~~c~~l~~lp~~~~~L~~L~Ls~c~~l 269 (594)
+++|++|++++|.++.+|.. .++|+.|+|++|. +..+|.++.+|+.|++++|. +..+|....+|+.|+|++| .+
T Consensus 241 p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~-L~~Lp~lp~~L~~L~Ls~N~-Lt~LP~~p~~L~~LdLS~N-~L 314 (788)
T PRK15387 241 PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP-LTHLPALPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSDN-QL 314 (788)
T ss_pred CCCCcEEEecCCccCcccCc---ccccceeeccCCc-hhhhhhchhhcCEEECcCCc-cccccccccccceeECCCC-cc
Confidence 35899999999999999864 4677888888764 66777666677777777765 6667765557777777774 55
Q ss_pred CcCCCCCCCccEEeeecCCCCCCchhhhcccccccccccccccccCcccccccccccccc
Q 041335 270 RSIPELPLCLKYLNLEDCNMLRSLPELSLCLQSLNARNCNRLRSLPEIPSCLQELDASVL 329 (594)
Q Consensus 270 ~~lp~~~~~L~~L~Ls~c~~~~~L~~l~~~L~~L~L~~c~~L~~lp~l~~sL~~L~~~~c 329 (594)
..+|..+.+|+.|++++|.+. .+|.+..+|+.|+|++ ++++.+|..+++|+.|+++++
T Consensus 315 ~~Lp~lp~~L~~L~Ls~N~L~-~LP~lp~~Lq~LdLS~-N~Ls~LP~lp~~L~~L~Ls~N 372 (788)
T PRK15387 315 ASLPALPSELCKLWAYNNQLT-SLPTLPSGLQELSVSD-NQLASLPTLPSELYKLWAYNN 372 (788)
T ss_pred ccCCCCcccccccccccCccc-cccccccccceEecCC-CccCCCCCCCcccceehhhcc
Confidence 566666666666666666554 3444434566666665 445566666666666655543
No 10
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.98 E-value=1.8e-10 Score=122.56 Aligned_cols=82 Identities=29% Similarity=0.373 Sum_probs=48.8
Q ss_pred ecccCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc-cc---ccccEEEeecCCCCcccCCCCC--
Q 041335 183 ILQEIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE-LP---LCLKSLDLMDCKILQSLPALPL-- 256 (594)
Q Consensus 183 ~l~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i~---~~L~~L~L~~c~~l~~lp~~~~-- 256 (594)
+|+.+..|..|+.|+++.|.++..|..+...+++-.|+||+|+ +..+|. +. ..|-.|||++|. ++.+|+.+.
T Consensus 95 iP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL 172 (1255)
T KOG0444|consen 95 IPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRL 172 (1255)
T ss_pred CCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccch-hhhcCHHHHHH
Confidence 5556666666666666666666666666666666666666543 666665 22 345556666544 555555444
Q ss_pred -CccEEEeeCC
Q 041335 257 -CLESLALTGC 266 (594)
Q Consensus 257 -~L~~L~Ls~c 266 (594)
.|++|.|++|
T Consensus 173 ~~LqtL~Ls~N 183 (1255)
T KOG0444|consen 173 SMLQTLKLSNN 183 (1255)
T ss_pred hhhhhhhcCCC
Confidence 4555555554
No 11
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.96 E-value=1.9e-09 Score=123.02 Aligned_cols=131 Identities=31% Similarity=0.485 Sum_probs=97.3
Q ss_pred CccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc-ccccccEEEeecCCCCcccCCCCC-CccEEEeeCCCCC
Q 041335 192 SLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE-LPLCLKSLDLMDCKILQSLPALPL-CLESLALTGCNML 269 (594)
Q Consensus 192 ~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i~~~L~~L~L~~c~~l~~lp~~~~-~L~~L~Ls~c~~l 269 (594)
+|+.|++++|.++.+|..+. ++|++|++++|. +..+|. ++++|+.|+|++|. +..+|..+. +|+.|+|++ +++
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~~~L~~L~Ls~N~-L~~LP~~l~s~L~~L~Ls~-N~L 274 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLPDTIQEMELSINR-ITELPERLPSALQSLDLFH-NKI 274 (754)
T ss_pred CCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhhccccEEECcCCc-cCcCChhHhCCCCEEECcC-Ccc
Confidence 79999999999999998764 589999999765 788887 77789999999877 668887777 899999986 466
Q ss_pred CcCCCCC-CCccEEeeecCCCCCCchh-hhcccccccccccccccccCc-ccccccccccccc
Q 041335 270 RSIPELP-LCLKYLNLEDCNMLRSLPE-LSLCLQSLNARNCNRLRSLPE-IPSCLQELDASVL 329 (594)
Q Consensus 270 ~~lp~~~-~~L~~L~Ls~c~~~~~L~~-l~~~L~~L~L~~c~~L~~lp~-l~~sL~~L~~~~c 329 (594)
..+|..+ ++|+.|+|++|++.+ +|. +..+|+.|+|++| .+..+|. .+++|+.|++++|
T Consensus 275 ~~LP~~l~~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N-~Lt~LP~~l~~sL~~L~Ls~N 335 (754)
T PRK15370 275 SCLPENLPEELRYLSVYDNSIRT-LPAHLPSGITHLNVQSN-SLTALPETLPPGLKTLEAGEN 335 (754)
T ss_pred CccccccCCCCcEEECCCCcccc-CcccchhhHHHHHhcCC-ccccCCccccccceeccccCC
Confidence 7788644 589999999887764 332 2225666666663 4455554 3556666666655
No 12
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.83 E-value=4.2e-09 Score=120.21 Aligned_cols=139 Identities=31% Similarity=0.476 Sum_probs=108.8
Q ss_pred CCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc-ccccccEEEeecCCCCcccCCCCC-CccEEEeeCCCC
Q 041335 191 SSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE-LPLCLKSLDLMDCKILQSLPALPL-CLESLALTGCNM 268 (594)
Q Consensus 191 ~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i~~~L~~L~L~~c~~l~~lp~~~~-~L~~L~Ls~c~~ 268 (594)
++|++|++++|.++.+|..+. .+|+.|+|++|. +..+|. ++++|+.|++++|. +..+|..+. +|+.|+|++| +
T Consensus 220 ~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~-L~~LP~~l~s~L~~L~Ls~N~-L~~LP~~l~~sL~~L~Ls~N-~ 294 (754)
T PRK15370 220 GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR-ITELPERLPSALQSLDLFHNK-ISCLPENLPEELRYLSVYDN-S 294 (754)
T ss_pred cCCCEEECCCCccccCChhhh--ccccEEECcCCc-cCcCChhHhCCCCEEECcCCc-cCccccccCCCCcEEECCCC-c
Confidence 489999999999999998664 579999999876 778888 77899999999765 778888777 8999999986 5
Q ss_pred CCcCCCC-CCCccEEeeecCCCCCCchh-hhcccccccccccccccccCc-ccccccccccccccccCCCCc
Q 041335 269 LRSIPEL-PLCLKYLNLEDCNMLRSLPE-LSLCLQSLNARNCNRLRSLPE-IPSCLQELDASVLEKLSKPSL 337 (594)
Q Consensus 269 l~~lp~~-~~~L~~L~Ls~c~~~~~L~~-l~~~L~~L~L~~c~~L~~lp~-l~~sL~~L~~~~c~~L~~~~~ 337 (594)
+..+|.. +++|+.|++++|.+.. +|. +..+|+.|++++|. ++.+|. ++++|+.|++++|. +..+|.
T Consensus 295 Lt~LP~~lp~sL~~L~Ls~N~Lt~-LP~~l~~sL~~L~Ls~N~-Lt~LP~~l~~sL~~L~Ls~N~-L~~LP~ 363 (754)
T PRK15370 295 IRTLPAHLPSGITHLNVQSNSLTA-LPETLPPGLKTLEAGENA-LTSLPASLPPELQVLDVSKNQ-ITVLPE 363 (754)
T ss_pred cccCcccchhhHHHHHhcCCcccc-CCccccccceeccccCCc-cccCChhhcCcccEEECCCCC-CCcCCh
Confidence 6778864 3578999999887764 443 33478889888864 666775 46788899998874 555553
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.74 E-value=1.6e-09 Score=98.65 Aligned_cols=130 Identities=34% Similarity=0.418 Sum_probs=81.2
Q ss_pred ecccCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc-cc--ccccEEEeecCCC-CcccCCCCC--
Q 041335 183 ILQEIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE-LP--LCLKSLDLMDCKI-LQSLPALPL-- 256 (594)
Q Consensus 183 ~l~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i~--~~L~~L~L~~c~~-l~~lp~~~~-- 256 (594)
+++.+..|.+|+.|++++|+++.+|.+++.|++|+.|+++-| .+..+|. ++ +.|+.|||+.|.. -..+|..+.
T Consensus 48 vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldltynnl~e~~lpgnff~m 126 (264)
T KOG0617|consen 48 VPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYM 126 (264)
T ss_pred cCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhccccccccccCCcchhHH
Confidence 556677777777777777777777777777777777777643 3666666 54 5677777776552 234666555
Q ss_pred -CccEEEeeCCCCCCcCCCC---CCCccEEeeecCCCCCCchhhhc---ccccccccccccccccCc
Q 041335 257 -CLESLALTGCNMLRSIPEL---PLCLKYLNLEDCNMLRSLPELSL---CLQSLNARNCNRLRSLPE 316 (594)
Q Consensus 257 -~L~~L~Ls~c~~l~~lp~~---~~~L~~L~Ls~c~~~~~L~~l~~---~L~~L~L~~c~~L~~lp~ 316 (594)
.|+.|.|++| ..+.+|.. +++|+.|.+.+|.++. +|.-.+ .|++|.+.+ ++|+-+|.
T Consensus 127 ~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll~-lpkeig~lt~lrelhiqg-nrl~vlpp 190 (264)
T KOG0617|consen 127 TTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLLS-LPKEIGDLTRLRELHIQG-NRLTVLPP 190 (264)
T ss_pred HHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchhh-CcHHHHHHHHHHHHhccc-ceeeecCh
Confidence 5666667663 34556644 3667777777776653 333222 677777777 45555543
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.63 E-value=4.9e-09 Score=111.86 Aligned_cols=142 Identities=26% Similarity=0.368 Sum_probs=111.7
Q ss_pred ccCcCCCCccEEEEeCCCCC--ccCccccCCCCCcEEEccCCCCCccCCc-c--cccccEEEeecCCCCcccCCCCC---
Q 041335 185 QEIACLSSLTGLHLSGNNFE--SLPASIKQLSQLSSLDLKDCKMLQSLPE-L--PLCLKSLDLMDCKILQSLPALPL--- 256 (594)
Q Consensus 185 ~~l~~L~~L~~L~l~~~~l~--~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i--~~~L~~L~L~~c~~l~~lp~~~~--- 256 (594)
..+..||.||.+.+..|+++ .+|..+-.|.-|..||||+|. +++.|. + .+++..|+|++|+ ++++|..+.
T Consensus 72 GELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinL 149 (1255)
T KOG0444|consen 72 GELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINL 149 (1255)
T ss_pred hhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhh
Confidence 46788999999999999988 689999999999999999976 999998 4 4799999999976 899999877
Q ss_pred -CccEEEeeCCCCCCcCCCCC---CCccEEeeecCCCCC----Cchhhhc------------------------cccccc
Q 041335 257 -CLESLALTGCNMLRSIPELP---LCLKYLNLEDCNMLR----SLPELSL------------------------CLQSLN 304 (594)
Q Consensus 257 -~L~~L~Ls~c~~l~~lp~~~---~~L~~L~Ls~c~~~~----~L~~l~~------------------------~L~~L~ 304 (594)
-|-.|+||. +.+..+|..+ ..|+.|.|++|++.- .||.+.. +|..++
T Consensus 150 tDLLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvD 228 (1255)
T KOG0444|consen 150 TDLLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVD 228 (1255)
T ss_pred HhHhhhcccc-chhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhcc
Confidence 566789998 6788999764 567888888887642 3333221 677777
Q ss_pred ccccccccccCcc---ccccccccccccc
Q 041335 305 ARNCNRLRSLPEI---PSCLQELDASVLE 330 (594)
Q Consensus 305 L~~c~~L~~lp~l---~~sL~~L~~~~c~ 330 (594)
++. +.|..+|+. ..+|+.|+++++.
T Consensus 229 lS~-N~Lp~vPecly~l~~LrrLNLS~N~ 256 (1255)
T KOG0444|consen 229 LSE-NNLPIVPECLYKLRNLRRLNLSGNK 256 (1255)
T ss_pred ccc-cCCCcchHHHhhhhhhheeccCcCc
Confidence 775 566777775 5667777777654
No 15
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.58 E-value=6.1e-08 Score=101.90 Aligned_cols=117 Identities=26% Similarity=0.465 Sum_probs=93.0
Q ss_pred ccCCCCCcEEEccCCCCCccCCcccccccEEEeecCCCCcccCCCCC-CccEEEeeCCCCCCcCCCCCCCccEEeeecCC
Q 041335 210 IKQLSQLSSLDLKDCKMLQSLPELPLCLKSLDLMDCKILQSLPALPL-CLESLALTGCNMLRSIPELPLCLKYLNLEDCN 288 (594)
Q Consensus 210 ~~~l~~L~~L~Ls~c~~l~~lP~i~~~L~~L~L~~c~~l~~lp~~~~-~L~~L~Ls~c~~l~~lp~~~~~L~~L~Ls~c~ 288 (594)
+..+.++..|++++| .++.+|.++.+|+.|.+++|..+..+|..+. +|++|.+++|..+..+|. +|+.|+++++.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP~---sLe~L~L~~n~ 123 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIESLPVLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLPE---SVRSLEIKGSA 123 (426)
T ss_pred HHHhcCCCEEEeCCC-CCcccCCCCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccccccc---ccceEEeCCCC
Confidence 345789999999998 6999999989999999999999999998777 999999999988877764 57788887543
Q ss_pred C--CCCchhhhcccccccccccccc--cccCc-ccccccccccccccccC
Q 041335 289 M--LRSLPELSLCLQSLNARNCNRL--RSLPE-IPSCLQELDASVLEKLS 333 (594)
Q Consensus 289 ~--~~~L~~l~~~L~~L~L~~c~~L--~~lp~-l~~sL~~L~~~~c~~L~ 333 (594)
. .+.||. +|+.|.+.+++.. ..+|. +|++|+.|++.+|..+.
T Consensus 124 ~~~L~~LPs---sLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~ 170 (426)
T PRK15386 124 TDSIKNVPN---GLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII 170 (426)
T ss_pred CcccccCcc---hHhheeccccccccccccccccCCcccEEEecCCCccc
Confidence 3 345554 7888888654422 33453 58999999999998664
No 16
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.32 E-value=7.8e-08 Score=102.43 Aligned_cols=140 Identities=24% Similarity=0.315 Sum_probs=95.8
Q ss_pred CcCCCCccEEEEeCCCCCccC-ccccCCCCCcEEEccCCCCCccC-Cc---ccccccEEEeecCCCCcccCCCCC----C
Q 041335 187 IACLSSLTGLHLSGNNFESLP-ASIKQLSQLSSLDLKDCKMLQSL-PE---LPLCLKSLDLMDCKILQSLPALPL----C 257 (594)
Q Consensus 187 l~~L~~L~~L~l~~~~l~~lP-~~~~~l~~L~~L~Ls~c~~l~~l-P~---i~~~L~~L~L~~c~~l~~lp~~~~----~ 257 (594)
|-.|.+++.|+|+.|++..+- .++-+|+.|+.|+||+|. +..+ ++ +..+|+.|+|++|. +..+++.-. .
T Consensus 265 Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~Na-I~rih~d~WsftqkL~~LdLs~N~-i~~l~~~sf~~L~~ 342 (873)
T KOG4194|consen 265 FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNA-IQRIHIDSWSFTQKLKELDLSSNR-ITRLDEGSFRVLSQ 342 (873)
T ss_pred eeeecccceeecccchhhhhhcccccccchhhhhccchhh-hheeecchhhhcccceeEeccccc-cccCChhHHHHHHH
Confidence 344556666666666666553 245567777777777655 4443 22 34678888888765 667776544 7
Q ss_pred ccEEEeeCCCCCCcCCC----CCCCccEEeeecCCCCCCchhhhc------ccccccccccccccccCcc----cccccc
Q 041335 258 LESLALTGCNMLRSIPE----LPLCLKYLNLEDCNMLRSLPELSL------CLQSLNARNCNRLRSLPEI----PSCLQE 323 (594)
Q Consensus 258 L~~L~Ls~c~~l~~lp~----~~~~L~~L~Ls~c~~~~~L~~l~~------~L~~L~L~~c~~L~~lp~l----~~sL~~ 323 (594)
|+.|+|+.| .+..+.+ .+++|+.|||+.|.++..++.-.. +|+.|.+.+ ++++++|.- +.+|++
T Consensus 343 Le~LnLs~N-si~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~ 420 (873)
T KOG4194|consen 343 LEELNLSHN-SIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEH 420 (873)
T ss_pred hhhhccccc-chHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccce
Confidence 788888874 3444443 258899999999988775543211 799999998 678999874 778889
Q ss_pred ccccccc
Q 041335 324 LDASVLE 330 (594)
Q Consensus 324 L~~~~c~ 330 (594)
|++.++.
T Consensus 421 LdL~~Na 427 (873)
T KOG4194|consen 421 LDLGDNA 427 (873)
T ss_pred ecCCCCc
Confidence 9987765
No 17
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.26 E-value=6.9e-08 Score=98.72 Aligned_cols=154 Identities=35% Similarity=0.485 Sum_probs=105.3
Q ss_pred ceeeecccCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc--cc-ccccEEEeecCCCCcccCCCC
Q 041335 179 AVMEILQEIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE--LP-LCLKSLDLMDCKILQSLPALP 255 (594)
Q Consensus 179 ~~i~~l~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~--i~-~~L~~L~L~~c~~l~~lp~~~ 255 (594)
+..+++++++.+..|..|+-.+|++.++|+.++++.+|..|++.+|. ++++|. +. +.|+.||...|- ++.+|+.+
T Consensus 125 ~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~l 202 (565)
T KOG0472|consen 125 ELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPENHIAMKRLKHLDCNSNL-LETLPPEL 202 (565)
T ss_pred ceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccc-hhhCCHHHHHHHHHHhcccchhh-hhcCChhh
Confidence 34456677777777777777777888888877777777777777755 666665 33 677888777654 78888888
Q ss_pred C---CccEEEeeCCCCCCcCCCCC--CCccEEeeecCCCCCCchhhhc----ccccccccccccccccCcc---cccccc
Q 041335 256 L---CLESLALTGCNMLRSIPELP--LCLKYLNLEDCNMLRSLPELSL----CLQSLNARNCNRLRSLPEI---PSCLQE 323 (594)
Q Consensus 256 ~---~L~~L~Ls~c~~l~~lp~~~--~~L~~L~Ls~c~~~~~L~~l~~----~L~~L~L~~c~~L~~lp~l---~~sL~~ 323 (594)
+ +|+.|+|.. +++..+|+.+ ..|++|+++.|.+ +.+|.-.+ +|..|+|.+ ++++++|+. +.+|.+
T Consensus 203 g~l~~L~~LyL~~-Nki~~lPef~gcs~L~Elh~g~N~i-~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~clLrsL~r 279 (565)
T KOG0472|consen 203 GGLESLELLYLRR-NKIRFLPEFPGCSLLKELHVGENQI-EMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICLLRSLER 279 (565)
T ss_pred cchhhhHHHHhhh-cccccCCCCCccHHHHHHHhcccHH-HhhHHHHhcccccceeeeccc-cccccCchHHHHhhhhhh
Confidence 7 666677776 5677777654 3477777765543 33443222 677888888 678888874 677888
Q ss_pred cccccccccCCCCcc
Q 041335 324 LDASVLEKLSKPSLD 338 (594)
Q Consensus 324 L~~~~c~~L~~~~~~ 338 (594)
||+++.. +..+|.+
T Consensus 280 LDlSNN~-is~Lp~s 293 (565)
T KOG0472|consen 280 LDLSNND-ISSLPYS 293 (565)
T ss_pred hcccCCc-cccCCcc
Confidence 8887753 4444433
No 18
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.24 E-value=3.2e-08 Score=101.13 Aligned_cols=131 Identities=29% Similarity=0.451 Sum_probs=88.6
Q ss_pred CCCceecCCchhHHHHHhccCccceeeecccCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc-cc
Q 041335 156 PGKRSRLWDPKEIRRVLKQKRNCAVMEILQEIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE-LP 234 (594)
Q Consensus 156 ~~~~~~l~~~~~i~~vl~~~~~~~~i~~l~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i~ 234 (594)
.+.....|...+............ .+.+.+..|..|.+|+++.|.+.++|+.++.+..++.|+.++|+ +.++|. +.
T Consensus 35 ~~e~e~wW~qv~l~~lils~N~l~--~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~-ls~lp~~i~ 111 (565)
T KOG0472|consen 35 TGEGENWWEQVDLQKLILSHNDLE--VLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNK-LSELPEQIG 111 (565)
T ss_pred ccchhhhhhhcchhhhhhccCchh--hccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccch-HhhccHHHh
Confidence 345556777766666544332221 13357788889999999999999999999999999999999865 777877 55
Q ss_pred --ccccEEEeecCCCCcccCCCCC---CccEEEeeCCCCCCcCCCCC---CCccEEeeecCCCCC
Q 041335 235 --LCLKSLDLMDCKILQSLPALPL---CLESLALTGCNMLRSIPELP---LCLKYLNLEDCNMLR 291 (594)
Q Consensus 235 --~~L~~L~L~~c~~l~~lp~~~~---~L~~L~Ls~c~~l~~lp~~~---~~L~~L~Ls~c~~~~ 291 (594)
.+|+.|+.+.+. +..+|++++ .|+.|+..+ +.+.++|+.+ .+|..|++.+|++..
T Consensus 112 s~~~l~~l~~s~n~-~~el~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~~~l~~l~~~~n~l~~ 174 (565)
T KOG0472|consen 112 SLISLVKLDCSSNE-LKELPDSIGRLLDLEDLDATN-NQISSLPEDMVNLSKLSKLDLEGNKLKA 174 (565)
T ss_pred hhhhhhhhhccccc-eeecCchHHHHhhhhhhhccc-cccccCchHHHHHHHHHHhhccccchhh
Confidence 477888888765 677777777 566665554 4556666543 334445555554444
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.13 E-value=2.6e-07 Score=84.47 Aligned_cols=111 Identities=27% Similarity=0.325 Sum_probs=92.2
Q ss_pred ecccCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCC-ccCCc-cc--ccccEEEeecCCCCcccCCCCC--
Q 041335 183 ILQEIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKML-QSLPE-LP--LCLKSLDLMDCKILQSLPALPL-- 256 (594)
Q Consensus 183 ~l~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l-~~lP~-i~--~~L~~L~L~~c~~l~~lp~~~~-- 256 (594)
+|..++.|++||.|++.-|.+..+|..|+.++-|+.|||++|..- ..+|. +. ..|+.|.|++|. .+.+|..++
T Consensus 71 lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~lp~dvg~l 149 (264)
T KOG0617|consen 71 LPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEILPPDVGKL 149 (264)
T ss_pred cChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccCChhhhhh
Confidence 778999999999999999999999999999999999999987533 35677 43 689999999976 788999998
Q ss_pred -CccEEEeeCCCCCCcCCCCC---CCccEEeeecCCCCCCchh
Q 041335 257 -CLESLALTGCNMLRSIPELP---LCLKYLNLEDCNMLRSLPE 295 (594)
Q Consensus 257 -~L~~L~Ls~c~~l~~lp~~~---~~L~~L~Ls~c~~~~~L~~ 295 (594)
+|+.|.+.+|. +-++|..+ ..|+.|++.+|.+.--.|.
T Consensus 150 t~lqil~lrdnd-ll~lpkeig~lt~lrelhiqgnrl~vlppe 191 (264)
T KOG0617|consen 150 TNLQILSLRDND-LLSLPKEIGDLTRLRELHIQGNRLTVLPPE 191 (264)
T ss_pred cceeEEeeccCc-hhhCcHHHHHHHHHHHHhcccceeeecChh
Confidence 78888888854 55688654 7789999999987654443
No 20
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.11 E-value=2.1e-06 Score=91.85 Aligned_cols=102 Identities=22% Similarity=0.306 Sum_probs=44.6
Q ss_pred CcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCCCC----Cc
Q 041335 187 IACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPALPL----CL 258 (594)
Q Consensus 187 l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~~~----~L 258 (594)
|.++++|+.+++..|.++.+|.......+|+.|+|.+|. +.++-. +. +.|+.|||+.|. +..+|..-. ++
T Consensus 98 f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~se~L~~l~alrslDLSrN~-is~i~~~sfp~~~ni 175 (873)
T KOG4194|consen 98 FYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNL-ISSVTSEELSALPALRSLDLSRNL-ISEIPKPSFPAKVNI 175 (873)
T ss_pred HhcCCcceeeeeccchhhhcccccccccceeEEeeeccc-cccccHHHHHhHhhhhhhhhhhch-hhcccCCCCCCCCCc
Confidence 344445555555555555554443344445555554432 222222 11 345555555543 333333222 45
Q ss_pred cEEEeeCCCCCCcCCC----CCCCccEEeeecCCCCC
Q 041335 259 ESLALTGCNMLRSIPE----LPLCLKYLNLEDCNMLR 291 (594)
Q Consensus 259 ~~L~Ls~c~~l~~lp~----~~~~L~~L~Ls~c~~~~ 291 (594)
++|+|++| .++.+.. .+.+|..|.|+.|.++.
T Consensus 176 ~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNritt 211 (873)
T KOG4194|consen 176 KKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRITT 211 (873)
T ss_pred eEEeeccc-cccccccccccccchheeeecccCcccc
Confidence 55555553 2333321 23455555555555543
No 21
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.10 E-value=5.7e-07 Score=100.69 Aligned_cols=39 Identities=44% Similarity=0.583 Sum_probs=26.1
Q ss_pred ccccEEEeecCCCCcccCCCCC----CccEEEeeCCCCCCcCCCC
Q 041335 235 LCLKSLDLMDCKILQSLPALPL----CLESLALTGCNMLRSIPEL 275 (594)
Q Consensus 235 ~~L~~L~L~~c~~l~~lp~~~~----~L~~L~Ls~c~~l~~lp~~ 275 (594)
.+|+.|+|++|. +.++|++.. .|+.|+||| ++|+.+|+.
T Consensus 383 ~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSG-NkL~~Lp~t 425 (1081)
T KOG0618|consen 383 KHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSG-NKLTTLPDT 425 (1081)
T ss_pred cceeeeeecccc-cccCCHHHHhchHHhHHHhccc-chhhhhhHH
Confidence 467777777765 667776544 567777777 566666643
No 22
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.05 E-value=3.6e-07 Score=102.28 Aligned_cols=133 Identities=32% Similarity=0.401 Sum_probs=87.1
Q ss_pred CccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc-cc--ccccEEEeecCCCCcccCCCCC---CccEEEeeC
Q 041335 192 SLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE-LP--LCLKSLDLMDCKILQSLPALPL---CLESLALTG 265 (594)
Q Consensus 192 ~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i~--~~L~~L~L~~c~~l~~lp~~~~---~L~~L~Ls~ 265 (594)
+|++++++.+.++.+|++++.+.+|+.|+..+|. +..+|. +. .+|+.|.+..|. ++.+|.... +|++|+|..
T Consensus 242 nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~tLdL~~ 319 (1081)
T KOG0618|consen 242 NLQYLDISHNNLSNLPEWIGACANLEALNANHNR-LVALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRTLDLQS 319 (1081)
T ss_pred cceeeecchhhhhcchHHHHhcccceEecccchh-HHhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeeeeeehh
Confidence 8999999999999999999999999999998765 677776 43 355555555544 444444433 555555554
Q ss_pred CCCCCcCCCC-----------------------------------------------------CCCccEEeeecCCCCCC
Q 041335 266 CNMLRSIPEL-----------------------------------------------------PLCLKYLNLEDCNMLRS 292 (594)
Q Consensus 266 c~~l~~lp~~-----------------------------------------------------~~~L~~L~Ls~c~~~~~ 292 (594)
+++..+|+. ..+|+.|+|++|.+. +
T Consensus 320 -N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~ 397 (1081)
T KOG0618|consen 320 -NNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-S 397 (1081)
T ss_pred -ccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-c
Confidence 334444432 256777777777543 2
Q ss_pred chhhhc----ccccccccccccccccCcc---cccccccccccc
Q 041335 293 LPELSL----CLQSLNARNCNRLRSLPEI---PSCLQELDASVL 329 (594)
Q Consensus 293 L~~l~~----~L~~L~L~~c~~L~~lp~l---~~sL~~L~~~~c 329 (594)
+|.... .|+.|+|++ ++|+.||+. .+.|++|.+.++
T Consensus 398 fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahsN 440 (1081)
T KOG0618|consen 398 FPASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHSN 440 (1081)
T ss_pred CCHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcCC
Confidence 332211 577788888 677888764 556777776543
No 23
>PLN03150 hypothetical protein; Provisional
Probab=97.96 E-value=1.1e-05 Score=91.49 Aligned_cols=82 Identities=27% Similarity=0.418 Sum_probs=48.5
Q ss_pred ccEEEEeCCCCC-ccCccccCCCCCcEEEccCCCCCccCCc-cc--ccccEEEeecCCCCcccCCCCC---CccEEEeeC
Q 041335 193 LTGLHLSGNNFE-SLPASIKQLSQLSSLDLKDCKMLQSLPE-LP--LCLKSLDLMDCKILQSLPALPL---CLESLALTG 265 (594)
Q Consensus 193 L~~L~l~~~~l~-~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i~--~~L~~L~L~~c~~l~~lp~~~~---~L~~L~Ls~ 265 (594)
++.|++++|.++ .+|..++.|++|+.|+|++|...+.+|. +. ++|+.|+|++|...+.+|..++ +|+.|+|++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 566777777766 5677777777777777776664456665 33 4666666666655555555444 444455544
Q ss_pred CCCCCcCCC
Q 041335 266 CNMLRSIPE 274 (594)
Q Consensus 266 c~~l~~lp~ 274 (594)
|...+.+|.
T Consensus 500 N~l~g~iP~ 508 (623)
T PLN03150 500 NSLSGRVPA 508 (623)
T ss_pred CcccccCCh
Confidence 444444443
No 24
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.94 E-value=5.2e-06 Score=78.21 Aligned_cols=99 Identities=27% Similarity=0.367 Sum_probs=26.6
Q ss_pred CcCCCCccEEEEeCCCCCccCcccc-CCCCCcEEEccCCCCCccCCccc--ccccEEEeecCCCCcccCCC----CCCcc
Q 041335 187 IACLSSLTGLHLSGNNFESLPASIK-QLSQLSSLDLKDCKMLQSLPELP--LCLKSLDLMDCKILQSLPAL----PLCLE 259 (594)
Q Consensus 187 l~~L~~L~~L~l~~~~l~~lP~~~~-~l~~L~~L~Ls~c~~l~~lP~i~--~~L~~L~L~~c~~l~~lp~~----~~~L~ 259 (594)
+.+..+++.|++++|.|+.+. .++ .+.+|+.|+|++|. ++.++.+. +.|+.|++++|. +.+++.. +.+|+
T Consensus 15 ~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~-I~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQ-ITKLEGLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQ 91 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHHHH-TT--
T ss_pred ccccccccccccccccccccc-chhhhhcCCCEEECCCCC-CccccCccChhhhhhcccCCCC-CCccccchHHhCCcCC
Confidence 334456788888888888763 555 57888888888765 76776643 577777777765 4444332 22666
Q ss_pred EEEeeCCCCCCcCCC-----CCCCccEEeeecCCC
Q 041335 260 SLALTGCNMLRSIPE-----LPLCLKYLNLEDCNM 289 (594)
Q Consensus 260 ~L~Ls~c~~l~~lp~-----~~~~L~~L~Ls~c~~ 289 (594)
+|+|++| ++..+.+ .+++|+.|+|.+|+.
T Consensus 92 ~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 92 ELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred EEECcCC-cCCChHHhHHHHcCCCcceeeccCCcc
Confidence 6666653 3333322 135555555555544
No 25
>PLN03150 hypothetical protein; Provisional
Probab=97.80 E-value=2.6e-05 Score=88.60 Aligned_cols=88 Identities=30% Similarity=0.383 Sum_probs=73.8
Q ss_pred ecccCcCCCCccEEEEeCCCCC-ccCccccCCCCCcEEEccCCCCCccCCc-cc--ccccEEEeecCCCCcccCCCCC--
Q 041335 183 ILQEIACLSSLTGLHLSGNNFE-SLPASIKQLSQLSSLDLKDCKMLQSLPE-LP--LCLKSLDLMDCKILQSLPALPL-- 256 (594)
Q Consensus 183 ~l~~l~~L~~L~~L~l~~~~l~-~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i~--~~L~~L~L~~c~~l~~lp~~~~-- 256 (594)
++..+..|++|+.|+|++|.++ .+|..++.+++|+.|+|++|...+.+|. +. ++|+.|+|++|...+.+|..+.
T Consensus 434 ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGR 513 (623)
T ss_pred CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhc
Confidence 5567889999999999999998 8899999999999999999987778888 54 6999999999998889998765
Q ss_pred --CccEEEeeCCCCCC
Q 041335 257 --CLESLALTGCNMLR 270 (594)
Q Consensus 257 --~L~~L~Ls~c~~l~ 270 (594)
++..+++.+|..+.
T Consensus 514 ~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 514 LLHRASFNFTDNAGLC 529 (623)
T ss_pred cccCceEEecCCcccc
Confidence 34566666655444
No 26
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.75 E-value=2.5e-05 Score=60.18 Aligned_cols=55 Identities=35% Similarity=0.573 Sum_probs=44.1
Q ss_pred CCccEEEEeCCCCCccCc-cccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCC
Q 041335 191 SSLTGLHLSGNNFESLPA-SIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCK 246 (594)
Q Consensus 191 ~~L~~L~l~~~~l~~lP~-~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~ 246 (594)
|+|++|++++|.++.+|. .|..+++|++|++++|. +..+|. +. ++|+.|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence 578999999999998874 78899999999999665 677765 33 578888887765
No 27
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.71 E-value=4.3e-06 Score=86.58 Aligned_cols=144 Identities=23% Similarity=0.204 Sum_probs=73.4
Q ss_pred cCcCCCCccEEEEeCCCCC-ccCccccCCC---CCcEEEccCCCCCc----cCCc----ccccccEEEeecCCCCc----
Q 041335 186 EIACLSSLTGLHLSGNNFE-SLPASIKQLS---QLSSLDLKDCKMLQ----SLPE----LPLCLKSLDLMDCKILQ---- 249 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~-~lP~~~~~l~---~L~~L~Ls~c~~l~----~lP~----i~~~L~~L~L~~c~~l~---- 249 (594)
.+..+++|++|++++|++. ..+..+..+. +|++|++++|.... .+.. ..++|+.|++++|....
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 155 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE 155 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence 4455667777777777765 3333343333 37777777765221 1111 12567777777776331
Q ss_pred ccCCCCC---CccEEEeeCCCCCC----cCCCCC---CCccEEeeecCCCCCC----chhhh---ccccccccccccccc
Q 041335 250 SLPALPL---CLESLALTGCNMLR----SIPELP---LCLKYLNLEDCNMLRS----LPELS---LCLQSLNARNCNRLR 312 (594)
Q Consensus 250 ~lp~~~~---~L~~L~Ls~c~~l~----~lp~~~---~~L~~L~Ls~c~~~~~----L~~l~---~~L~~L~L~~c~~L~ 312 (594)
.++..+. +|++|++++|.... .++..+ ++|+.|+|++|.+.+. +.... .+|+.|++++|+.-.
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 1222221 57777777765432 122212 4677777777765531 11110 157777777654221
Q ss_pred ----ccCcc----cccccccccccc
Q 041335 313 ----SLPEI----PSCLQELDASVL 329 (594)
Q Consensus 313 ----~lp~l----~~sL~~L~~~~c 329 (594)
.+... ...|+.|++.+|
T Consensus 236 ~~~~~l~~~~~~~~~~L~~L~l~~n 260 (319)
T cd00116 236 AGAAALASALLSPNISLLTLSLSCN 260 (319)
T ss_pred HHHHHHHHHHhccCCCceEEEccCC
Confidence 11111 245666666666
No 28
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.70 E-value=4e-05 Score=54.88 Aligned_cols=41 Identities=27% Similarity=0.519 Sum_probs=34.8
Q ss_pred CCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc
Q 041335 191 SSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE 232 (594)
Q Consensus 191 ~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~ 232 (594)
++|++|++++|+++.+|+.+++|++|++|++++|. +..+|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCcC
Confidence 47999999999999999989999999999999885 766654
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.70 E-value=3.6e-06 Score=89.94 Aligned_cols=77 Identities=35% Similarity=0.452 Sum_probs=34.9
Q ss_pred cCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc-cc--ccccEEEeecCCCCcccCCCCC---Ccc
Q 041335 186 EIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE-LP--LCLKSLDLMDCKILQSLPALPL---CLE 259 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i~--~~L~~L~L~~c~~l~~lp~~~~---~L~ 259 (594)
.++.|..|++|+++.|.+..+|..+..|+ |+.|.+++ ++++.+|. ++ .+|..||.+.|. +.++|..++ +|+
T Consensus 116 ~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr 192 (722)
T KOG0532|consen 116 AICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLR 192 (722)
T ss_pred hhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHH
Confidence 44444455555555555555554444444 44444443 22444444 33 344444444433 444444433 444
Q ss_pred EEEeeC
Q 041335 260 SLALTG 265 (594)
Q Consensus 260 ~L~Ls~ 265 (594)
.|++..
T Consensus 193 ~l~vrR 198 (722)
T KOG0532|consen 193 DLNVRR 198 (722)
T ss_pred HHHHhh
Confidence 444444
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=97.69 E-value=1.1e-06 Score=93.71 Aligned_cols=150 Identities=32% Similarity=0.359 Sum_probs=117.0
Q ss_pred ecccCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc-cc-ccccEEEeecCCCCcccCCCCC---C
Q 041335 183 ILQEIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE-LP-LCLKSLDLMDCKILQSLPALPL---C 257 (594)
Q Consensus 183 ~l~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i~-~~L~~L~L~~c~~l~~lp~~~~---~ 257 (594)
+|..++.+-.|..|.+..|.+..+|..+.+|..|.+|||+.|. +..+|. +. --|+.|-+++|+ ++.+|..++ .
T Consensus 90 lp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lpLkvli~sNNk-l~~lp~~ig~~~t 167 (722)
T KOG0532|consen 90 LPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLPLKVLIVSNNK-LTSLPEEIGLLPT 167 (722)
T ss_pred CchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCcceeEEEecCc-cccCCcccccchh
Confidence 4556666667888899999999999999999999999999765 778887 54 468889888866 899999998 7
Q ss_pred ccEEEeeCCCCCCcCCCC---CCCccEEeeecCCCCCCchhh-hcccccccccccccccccCcc---ccccccccccccc
Q 041335 258 LESLALTGCNMLRSIPEL---PLCLKYLNLEDCNMLRSLPEL-SLCLQSLNARNCNRLRSLPEI---PSCLQELDASVLE 330 (594)
Q Consensus 258 L~~L~Ls~c~~l~~lp~~---~~~L~~L~Ls~c~~~~~L~~l-~~~L~~L~L~~c~~L~~lp~l---~~sL~~L~~~~c~ 330 (594)
|..|+.+. +.+.++|.. +.+|+.|++..|+++.-.+++ .+.|..|++++ +++..||.. +..|++|.+.+++
T Consensus 168 l~~ld~s~-nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 168 LAHLDVSK-NEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred HHHhhhhh-hhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeeccc-CceeecchhhhhhhhheeeeeccCC
Confidence 88888887 456677754 477888899999888755554 34788999984 888999976 6677788886554
Q ss_pred ccCCCCc
Q 041335 331 KLSKPSL 337 (594)
Q Consensus 331 ~L~~~~~ 337 (594)
|++.|.
T Consensus 246 -LqSPPA 251 (722)
T KOG0532|consen 246 -LQSPPA 251 (722)
T ss_pred -CCCChH
Confidence 555553
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=97.57 E-value=1.2e-05 Score=83.36 Aligned_cols=38 Identities=32% Similarity=0.241 Sum_probs=17.5
Q ss_pred cCCCCccEEEEeCCCCCc-------cCccccCCCCCcEEEccCCC
Q 041335 188 ACLSSLTGLHLSGNNFES-------LPASIKQLSQLSSLDLKDCK 225 (594)
Q Consensus 188 ~~L~~L~~L~l~~~~l~~-------lP~~~~~l~~L~~L~Ls~c~ 225 (594)
...+.|+.|+++++.+.. ++..+..+++|+.|++++|.
T Consensus 48 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 92 (319)
T cd00116 48 RPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA 92 (319)
T ss_pred hhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC
Confidence 334445555555544331 12234445555555555544
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.54 E-value=1.4e-05 Score=79.21 Aligned_cols=96 Identities=25% Similarity=0.280 Sum_probs=65.7
Q ss_pred CCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc--ccccccEEEeecCCCCcccC---CCCCCccEEEeeC
Q 041335 191 SSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE--LPLCLKSLDLMDCKILQSLP---ALPLCLESLALTG 265 (594)
Q Consensus 191 ~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~--i~~~L~~L~L~~c~~l~~lp---~~~~~L~~L~Ls~ 265 (594)
..|+.|++++|.++.+-.++.-++.++.|++|+|. +..+.. ..++|+.|||++|. +.++- .-+++.++|.|++
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~nLa~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQNLAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccc-eeeehhhhhcccceEeecccch-hHhhhhhHhhhcCEeeeehhh
Confidence 36888899999888888888888899999999875 555554 33678888888876 44333 2234777777777
Q ss_pred CCCCCcCCCC--CCCccEEeeecCCC
Q 041335 266 CNMLRSIPEL--PLCLKYLNLEDCNM 289 (594)
Q Consensus 266 c~~l~~lp~~--~~~L~~L~Ls~c~~ 289 (594)
+.++.+... +-+|..||+++|++
T Consensus 362 -N~iE~LSGL~KLYSLvnLDl~~N~I 386 (490)
T KOG1259|consen 362 -NKIETLSGLRKLYSLVNLDLSSNQI 386 (490)
T ss_pred -hhHhhhhhhHhhhhheeccccccch
Confidence 344444422 34667777777654
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.50 E-value=9.7e-05 Score=86.29 Aligned_cols=73 Identities=27% Similarity=0.367 Sum_probs=59.9
Q ss_pred HhccCccceeeecccCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCccc---ccccEEEeec
Q 041335 172 LKQKRNCAVMEILQEIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPELP---LCLKSLDLMD 244 (594)
Q Consensus 172 l~~~~~~~~i~~l~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~i~---~~L~~L~L~~ 244 (594)
|....+....++|+.++.|-+||||+++++.++.+|..+++|+.|.+|++..+..+..+|.+. .+|++|.+..
T Consensus 576 LDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 576 LDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred EECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 444444555668889999999999999999999999999999999999999988777777632 5777777765
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.49 E-value=4.9e-05 Score=81.52 Aligned_cols=140 Identities=39% Similarity=0.494 Sum_probs=95.7
Q ss_pred cCcCCCCccEEEEeCCCCCccCccccCCC-CCcEEEccCCCCCccCCc---ccccccEEEeecCCCCcccCCCCC---Cc
Q 041335 186 EIACLSSLTGLHLSGNNFESLPASIKQLS-QLSSLDLKDCKMLQSLPE---LPLCLKSLDLMDCKILQSLPALPL---CL 258 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~~lP~~~~~l~-~L~~L~Ls~c~~l~~lP~---i~~~L~~L~L~~c~~l~~lp~~~~---~L 258 (594)
.+..++.++.|.+.+++++.+|+....+. +|+.|++++|. +..+|. -.++|+.|++++|. +..+|...+ .|
T Consensus 111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L 188 (394)
T COG4886 111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNL 188 (394)
T ss_pred hhhcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhh
Confidence 34445678888888888888888887774 88888888755 777753 34788888888876 777777652 88
Q ss_pred cEEEeeCCCCCCcCCCC---CCCccEEeeecCCCCCCchhhh--cccccccccccccccccCc---ccccccccccccc
Q 041335 259 ESLALTGCNMLRSIPEL---PLCLKYLNLEDCNMLRSLPELS--LCLQSLNARNCNRLRSLPE---IPSCLQELDASVL 329 (594)
Q Consensus 259 ~~L~Ls~c~~l~~lp~~---~~~L~~L~Ls~c~~~~~L~~l~--~~L~~L~L~~c~~L~~lp~---l~~sL~~L~~~~c 329 (594)
+.|++++ +++..+|.. +..|+.|.+++|.....+..+. .++..|.+.+ +++..++. .+++++.|+++++
T Consensus 189 ~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 189 NNLDLSG-NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLEDLPESIGNLSNLETLDLSNN 265 (394)
T ss_pred hheeccC-CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCC-ceeeeccchhccccccceeccccc
Confidence 8888888 667778863 3558888888886444333222 1555566555 33333333 3566777777655
No 35
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.43 E-value=9.3e-06 Score=83.38 Aligned_cols=47 Identities=34% Similarity=0.445 Sum_probs=36.3
Q ss_pred cCcCCCCccEEEEeCCCCCcc-CccccCCCCCcEEEccCCCCCccCCc
Q 041335 186 EIACLSSLTGLHLSGNNFESL-PASIKQLSQLSSLDLKDCKMLQSLPE 232 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~~l-P~~~~~l~~L~~L~Ls~c~~l~~lP~ 232 (594)
.|+.+++||.|+|+.|+|+.+ |..|..|..|-.|-+.++.+++.+|.
T Consensus 86 aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 86 AFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred hccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 577778888888888888766 77788888887777777667877776
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.43 E-value=5.7e-05 Score=81.03 Aligned_cols=149 Identities=30% Similarity=0.356 Sum_probs=108.3
Q ss_pred ecccCcCCC-CccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc-c--cccccEEEeecCCCCcccCCCCC--
Q 041335 183 ILQEIACLS-SLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE-L--PLCLKSLDLMDCKILQSLPALPL-- 256 (594)
Q Consensus 183 ~l~~l~~L~-~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i--~~~L~~L~L~~c~~l~~lp~~~~-- 256 (594)
+++....+. +|+.|+++.|.++.+|..++.+++|+.|++++|. +..+|. . .+.|+.|+++++. +..+|..+.
T Consensus 131 i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~ 208 (394)
T COG4886 131 IPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELL 208 (394)
T ss_pred CccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhheeccCCc-cccCchhhhhh
Confidence 344555563 8999999999999999999999999999999876 888888 3 3799999999977 889999753
Q ss_pred -CccEEEeeCCCCCCcCC--CCCCCccEEeeecCCCCC--CchhhhcccccccccccccccccCcc--cccccccccccc
Q 041335 257 -CLESLALTGCNMLRSIP--ELPLCLKYLNLEDCNMLR--SLPELSLCLQSLNARNCNRLRSLPEI--PSCLQELDASVL 329 (594)
Q Consensus 257 -~L~~L~Ls~c~~l~~lp--~~~~~L~~L~Ls~c~~~~--~L~~l~~~L~~L~L~~c~~L~~lp~l--~~sL~~L~~~~c 329 (594)
.|++|.+++|..+..+. ....++..|.+.++.+.. .......+++.|++++ +.+.+++.+ ..+++.|++++.
T Consensus 209 ~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~-n~i~~i~~~~~~~~l~~L~~s~n 287 (394)
T COG4886 209 SALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSN-NQISSISSLGSLTNLRELDLSGN 287 (394)
T ss_pred hhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceecccc-ccccccccccccCccCEEeccCc
Confidence 69999999975333222 123566777777666543 2222222689999988 566777664 466777777765
Q ss_pred cccCC
Q 041335 330 EKLSK 334 (594)
Q Consensus 330 ~~L~~ 334 (594)
.....
T Consensus 288 ~~~~~ 292 (394)
T COG4886 288 SLSNA 292 (394)
T ss_pred ccccc
Confidence 54433
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=97.31 E-value=0.00021 Score=67.36 Aligned_cols=86 Identities=29% Similarity=0.415 Sum_probs=36.2
Q ss_pred eeecccCc-CCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc-c---cccccEEEeecCCCCcccCCC-
Q 041335 181 MEILQEIA-CLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE-L---PLCLKSLDLMDCKILQSLPAL- 254 (594)
Q Consensus 181 i~~l~~l~-~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i---~~~L~~L~L~~c~~l~~lp~~- 254 (594)
+...+.++ .+.+|+.|++++|.++.++ .+..+++|++|++++|. ++.++. + .++|+.|++++|. +..+-..
T Consensus 31 I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~L~~N~-I~~l~~l~ 107 (175)
T PF14580_consen 31 ISTIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELYLSNNK-ISDLNELE 107 (175)
T ss_dssp -----S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS----SCCCCG
T ss_pred cccccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCCEEECcCCc-CCChHHhH
Confidence 33334666 5789999999999999986 68889999999999765 777764 3 3799999999877 4444332
Q ss_pred ----CCCccEEEeeCCCCC
Q 041335 255 ----PLCLESLALTGCNML 269 (594)
Q Consensus 255 ----~~~L~~L~Ls~c~~l 269 (594)
+.+|+.|+|.||+..
T Consensus 108 ~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 108 PLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp GGGG-TT--EEE-TT-GGG
T ss_pred HHHcCCCcceeeccCCccc
Confidence 128999999997653
No 38
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=1.6e-05 Score=78.84 Aligned_cols=142 Identities=26% Similarity=0.290 Sum_probs=83.8
Q ss_pred CcCCCCccEEEEeCCCCC-ccCccccCCCCCcEEEccCCCCCccCCc--cc---ccccEEEeecCCCCccc----CCCCC
Q 041335 187 IACLSSLTGLHLSGNNFE-SLPASIKQLSQLSSLDLKDCKMLQSLPE--LP---LCLKSLDLMDCKILQSL----PALPL 256 (594)
Q Consensus 187 l~~L~~L~~L~l~~~~l~-~lP~~~~~l~~L~~L~Ls~c~~l~~lP~--i~---~~L~~L~L~~c~~l~~l----p~~~~ 256 (594)
++.+.+|+-|.+.|+.+. .+-..+.+-.+|+.|+|+.|..+++... +. +.|..|+|+.|...... -..++
T Consensus 206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~his 285 (419)
T KOG2120|consen 206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHIS 285 (419)
T ss_pred HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhc
Confidence 445566777777776665 3334455666777777777776655443 21 46777777777643322 22233
Q ss_pred -CccEEEeeCCCCCC------cCCCCCCCccEEeeecCCCCCC--chhhh--cccccccccccccccccCc------ccc
Q 041335 257 -CLESLALTGCNMLR------SIPELPLCLKYLNLEDCNMLRS--LPELS--LCLQSLNARNCNRLRSLPE------IPS 319 (594)
Q Consensus 257 -~L~~L~Ls~c~~l~------~lp~~~~~L~~L~Ls~c~~~~~--L~~l~--~~L~~L~L~~c~~L~~lp~------l~~ 319 (594)
.|..|+|+||..-- .+-.-.++|.+||||+|..+.. +..+. ..|++|.++.|-.+ +|+ ..+
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~p 363 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKP 363 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCc
Confidence 77777887774321 1222347788888888876652 11111 16778888887543 222 156
Q ss_pred ccccccccccc
Q 041335 320 CLQELDASVLE 330 (594)
Q Consensus 320 sL~~L~~~~c~ 330 (594)
+|.+|++.+|-
T Consensus 364 sl~yLdv~g~v 374 (419)
T KOG2120|consen 364 SLVYLDVFGCV 374 (419)
T ss_pred ceEEEEecccc
Confidence 77888887774
No 39
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=6.4e-05 Score=78.34 Aligned_cols=106 Identities=24% Similarity=0.287 Sum_probs=53.7
Q ss_pred cCcCCCCccEEEEeCCCCC---ccCccccCCCCCcEEEccCCCCCccCCc----ccccccEEEeecCCCCcc----cCCC
Q 041335 186 EIACLSSLTGLHLSGNNFE---SLPASIKQLSQLSSLDLKDCKMLQSLPE----LPLCLKSLDLMDCKILQS----LPAL 254 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~---~lP~~~~~l~~L~~L~Ls~c~~l~~lP~----i~~~L~~L~L~~c~~l~~----lp~~ 254 (594)
....|++++.|+++.|-+. .+-.-...|++|+.|+|+.|...--... ..+.|+.|.|++|..... +-..
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~ 220 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLT 220 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHh
Confidence 3455667777777776544 2223345677777777776543221111 124667777777663211 1111
Q ss_pred CCCccEEEeeCCCCCC--cCC-CCCCCccEEeeecCCCCC
Q 041335 255 PLCLESLALTGCNMLR--SIP-ELPLCLKYLNLEDCNMLR 291 (594)
Q Consensus 255 ~~~L~~L~Ls~c~~l~--~lp-~~~~~L~~L~Ls~c~~~~ 291 (594)
+.+|+.|.|.+|+.+. ..+ +.+..|+.|+|++|++..
T Consensus 221 fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~ 260 (505)
T KOG3207|consen 221 FPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID 260 (505)
T ss_pred CCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc
Confidence 1256666666653221 112 123456666666665543
No 40
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=96.96 E-value=0.00012 Score=72.79 Aligned_cols=103 Identities=25% Similarity=0.320 Sum_probs=73.0
Q ss_pred ccCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCccc---ccccEEEeecCCCCcccCCCCC--Ccc
Q 041335 185 QEIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPELP---LCLKSLDLMDCKILQSLPALPL--CLE 259 (594)
Q Consensus 185 ~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~i~---~~L~~L~L~~c~~l~~lp~~~~--~L~ 259 (594)
.+..-+|.+|.|+++.|.+..+-. +..|++|+.||||+|. +.++-.+. .+++.|.|++|. ++.+...-. +|.
T Consensus 301 ESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La~N~-iE~LSGL~KLYSLv 377 (490)
T KOG1259|consen 301 ESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLAQNK-IETLSGLRKLYSLV 377 (490)
T ss_pred hhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeehhhhh-HhhhhhhHhhhhhe
Confidence 366778899999999999987754 8899999999999876 66665533 478999999976 565543222 999
Q ss_pred EEEeeCCCCCCcCCC-----CCCCccEEeeecCCCCC
Q 041335 260 SLALTGCNMLRSIPE-----LPLCLKYLNLEDCNMLR 291 (594)
Q Consensus 260 ~L~Ls~c~~l~~lp~-----~~~~L~~L~Ls~c~~~~ 291 (594)
.|++++|+ ++.+.+ .+++|+.|.|.+|++.+
T Consensus 378 nLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~~NPl~~ 413 (490)
T KOG1259|consen 378 NLDLSSNQ-IEELDEVNHIGNLPCLETLRLTGNPLAG 413 (490)
T ss_pred eccccccc-hhhHHHhcccccccHHHHHhhcCCCccc
Confidence 99999954 333321 23455555555555443
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=96.93 E-value=0.00088 Score=51.41 Aligned_cols=51 Identities=33% Similarity=0.488 Sum_probs=27.4
Q ss_pred CCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCCCC----CccEEEeeCC
Q 041335 214 SQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPALPL----CLESLALTGC 266 (594)
Q Consensus 214 ~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~~~----~L~~L~Ls~c 266 (594)
++|++|++++| .+..+|. +. ++|++|++++|. +..+|+... +|++|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCC
Confidence 35666777765 4666664 22 466666666554 344444322 4555555544
No 42
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.00025 Score=74.07 Aligned_cols=140 Identities=21% Similarity=0.205 Sum_probs=93.6
Q ss_pred cCCCCccEEEEeCCCCCccCc--cccCCCCCcEEEccCCCCCccCCc---cc---ccccEEEeecCCCCcccCCC----C
Q 041335 188 ACLSSLTGLHLSGNNFESLPA--SIKQLSQLSSLDLKDCKMLQSLPE---LP---LCLKSLDLMDCKILQSLPAL----P 255 (594)
Q Consensus 188 ~~L~~L~~L~l~~~~l~~lP~--~~~~l~~L~~L~Ls~c~~l~~lP~---i~---~~L~~L~L~~c~~l~~lp~~----~ 255 (594)
.++.+|+...+.+++....+. -...+++++.|||++|- +..+-. |. ++|+.|+|+.|...-..... +
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 357799999999999887774 66789999999999864 333222 22 68999999998743222221 2
Q ss_pred CCccEEEeeCCCCCC----cCCCCCCCccEEeeecCCCCC--Cchh-hhcccccccccccccccccCcc-----cccccc
Q 041335 256 LCLESLALTGCNMLR----SIPELPLCLKYLNLEDCNMLR--SLPE-LSLCLQSLNARNCNRLRSLPEI-----PSCLQE 323 (594)
Q Consensus 256 ~~L~~L~Ls~c~~l~----~lp~~~~~L~~L~Ls~c~~~~--~L~~-l~~~L~~L~L~~c~~L~~lp~l-----~~sL~~ 323 (594)
.+|+.|.|++|.... .+-..+|+|+.|+|+.|+... ..+. ....|+.|+|++++. .+.+.. ++.|..
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l-i~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL-IDFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc-cccccccccccccchhh
Confidence 289999999997542 223346899999999995322 1121 112799999999654 444432 455666
Q ss_pred cccccc
Q 041335 324 LDASVL 329 (594)
Q Consensus 324 L~~~~c 329 (594)
|.+++|
T Consensus 276 Lnls~t 281 (505)
T KOG3207|consen 276 LNLSST 281 (505)
T ss_pred hhcccc
Confidence 666554
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=3.2e-05 Score=76.86 Aligned_cols=96 Identities=23% Similarity=0.283 Sum_probs=52.4
Q ss_pred CccEEEEeCCCCC--ccCccccCCCCCcEEEccCCCCCccCCc-cc--ccccEEEeecCCCCcccCCC-----CCCccEE
Q 041335 192 SLTGLHLSGNNFE--SLPASIKQLSQLSSLDLKDCKMLQSLPE-LP--LCLKSLDLMDCKILQSLPAL-----PLCLESL 261 (594)
Q Consensus 192 ~L~~L~l~~~~l~--~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i~--~~L~~L~L~~c~~l~~lp~~-----~~~L~~L 261 (594)
.|++||++...++ ++..-++.+.+|+.|.|.|+..-..+-. |+ .+|+.|+|++|+.+.+.... ...|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 5788888877776 4444556677777777776552222222 33 36777777777655433221 1155666
Q ss_pred EeeCCCCCCcCC-----CCCCCccEEeeecC
Q 041335 262 ALTGCNMLRSIP-----ELPLCLKYLNLEDC 287 (594)
Q Consensus 262 ~Ls~c~~l~~lp-----~~~~~L~~L~Ls~c 287 (594)
+|+.|......- ..-++|+.|+|+||
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~ 296 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGY 296 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhh
Confidence 666654433221 11244555555555
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.34 E-value=0.00015 Score=79.71 Aligned_cols=77 Identities=30% Similarity=0.437 Sum_probs=50.5
Q ss_pred cCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCccc---ccccEEEeecCCCCcccCCCCC--CccE
Q 041335 186 EIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPELP---LCLKSLDLMDCKILQSLPALPL--CLES 260 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~i~---~~L~~L~L~~c~~l~~lp~~~~--~L~~ 260 (594)
++.-++.|+.|+|+.|.++..- .+..+++|++|||++|. +..+|.+. .+|+.|.+++|. ++++-..-. +|+.
T Consensus 182 SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrnN~-l~tL~gie~LksL~~ 258 (1096)
T KOG1859|consen 182 SLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRNNA-LTTLRGIENLKSLYG 258 (1096)
T ss_pred HHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhhhheeeeecccH-HHhhhhHHhhhhhhc
Confidence 5666778888888888777664 66777888888888754 77777633 367777777755 444432211 5555
Q ss_pred EEeeC
Q 041335 261 LALTG 265 (594)
Q Consensus 261 L~Ls~ 265 (594)
|++++
T Consensus 259 LDlsy 263 (1096)
T KOG1859|consen 259 LDLSY 263 (1096)
T ss_pred cchhH
Confidence 66655
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.01 E-value=0.00026 Score=78.04 Aligned_cols=115 Identities=27% Similarity=0.232 Sum_probs=86.8
Q ss_pred CccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCcc--cccccEEEeecCCCCcccCCCCC---CccEEEeeCC
Q 041335 192 SLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPEL--PLCLKSLDLMDCKILQSLPALPL---CLESLALTGC 266 (594)
Q Consensus 192 ~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~i--~~~L~~L~L~~c~~l~~lp~~~~---~L~~L~Ls~c 266 (594)
.|...+.+.|.+..+-.++.-++.|+.|||++|+ +..+-.+ .++|++|||+.|. |..+|..-. .|+.|+|++|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk-~~~v~~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrnN 242 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNK-FTKVDNLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRNN 242 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh-hhhhHHHHhcccccccccccch-hccccccchhhhhheeeeeccc
Confidence 6778888999999888888999999999999986 4444442 3689999999976 777776432 8999999985
Q ss_pred CCCCcCC--CCCCCccEEeeecCCCCC--Cchhhhc--ccccccccccc
Q 041335 267 NMLRSIP--ELPLCLKYLNLEDCNMLR--SLPELSL--CLQSLNARNCN 309 (594)
Q Consensus 267 ~~l~~lp--~~~~~L~~L~Ls~c~~~~--~L~~l~~--~L~~L~L~~c~ 309 (594)
-++++- +.+.+|+.||+++|-+++ .|..+.. .|+.|+|.+|+
T Consensus 243 -~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 243 -ALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred -HHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 455554 346889999999997776 3332221 67888888865
No 46
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=95.88 E-value=0.003 Score=68.30 Aligned_cols=105 Identities=25% Similarity=0.293 Sum_probs=73.3
Q ss_pred ccCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCccc--ccccEEEeecCCCCcccCCCC--CCccE
Q 041335 185 QEIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPELP--LCLKSLDLMDCKILQSLPALP--LCLES 260 (594)
Q Consensus 185 ~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~i~--~~L~~L~L~~c~~l~~lp~~~--~~L~~ 260 (594)
..+..+.+|.+|++.+|.++.+...+..+++|++|+|++|. ++.+..+. +.|+.|++.+|. +..++..- .+|+.
T Consensus 89 ~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~l~~l~~L~~L~l~~N~-i~~~~~~~~l~~L~~ 166 (414)
T KOG0531|consen 89 NHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEGLSTLTLLKELNLSGNL-ISDISGLESLKSLKL 166 (414)
T ss_pred cccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccchhhccchhhheeccCc-chhccCCccchhhhc
Confidence 34677788889999998888887657888899999998765 66666532 468888888876 55555442 27888
Q ss_pred EEeeCCCCCCcCC---CCCCCccEEeeecCCCCC
Q 041335 261 LALTGCNMLRSIP---ELPLCLKYLNLEDCNMLR 291 (594)
Q Consensus 261 L~Ls~c~~l~~lp---~~~~~L~~L~Ls~c~~~~ 291 (594)
+++++|.....=+ ....+|+.+.+.+|.+..
T Consensus 167 l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~ 200 (414)
T KOG0531|consen 167 LDLSYNRIVDIENDELSELISLEELDLGGNSIRE 200 (414)
T ss_pred ccCCcchhhhhhhhhhhhccchHHHhccCCchhc
Confidence 8888865433333 344667777777775543
No 47
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=95.22 E-value=0.0066 Score=62.97 Aligned_cols=81 Identities=26% Similarity=0.292 Sum_probs=59.6
Q ss_pred cCcCCCCccEEEEeCCCCCcc-CccccCCCCCcEEEccCCCCCccCCc-cc---ccccEEEeecCCCCcccCCCCC---C
Q 041335 186 EIACLSSLTGLHLSGNNFESL-PASIKQLSQLSSLDLKDCKMLQSLPE-LP---LCLKSLDLMDCKILQSLPALPL---C 257 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~~l-P~~~~~l~~L~~L~Ls~c~~l~~lP~-i~---~~L~~L~L~~c~~l~~lp~~~~---~ 257 (594)
.|..|++|+.|++++|.++.+ +.+|..+..++.|.|..|+ +..+.. +. .+|+.|+|.+|....--|-.+. +
T Consensus 269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~ 347 (498)
T KOG4237|consen 269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS 347 (498)
T ss_pred HHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence 578899999999999999877 6688999999999999865 666655 22 5788888888774444444333 6
Q ss_pred ccEEEeeCCC
Q 041335 258 LESLALTGCN 267 (594)
Q Consensus 258 L~~L~Ls~c~ 267 (594)
|.+|+|-+|.
T Consensus 348 l~~l~l~~Np 357 (498)
T KOG4237|consen 348 LSTLNLLSNP 357 (498)
T ss_pred eeeeehccCc
Confidence 6777666543
No 48
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.06 E-value=0.0089 Score=35.80 Aligned_cols=22 Identities=50% Similarity=0.745 Sum_probs=17.1
Q ss_pred CccEEEEeCCCCCccCccccCC
Q 041335 192 SLTGLHLSGNNFESLPASIKQL 213 (594)
Q Consensus 192 ~L~~L~l~~~~l~~lP~~~~~l 213 (594)
+|++|++++|+++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5788888888888888877653
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=94.81 E-value=0.029 Score=40.01 Aligned_cols=37 Identities=27% Similarity=0.511 Sum_probs=22.4
Q ss_pred CCCcEEEccCCCCCccCCc-cc--ccccEEEeecCCCCcccC
Q 041335 214 SQLSSLDLKDCKMLQSLPE-LP--LCLKSLDLMDCKILQSLP 252 (594)
Q Consensus 214 ~~L~~L~Ls~c~~l~~lP~-i~--~~L~~L~L~~c~~l~~lp 252 (594)
++|++|++++|. +..+|. +. ++|+.|++++|. +..+|
T Consensus 1 ~~L~~L~l~~N~-i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQ-ITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSSS--SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCCC-CcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 467777887654 667776 54 577777777765 44443
No 50
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=94.70 E-value=0.011 Score=60.38 Aligned_cols=139 Identities=24% Similarity=0.230 Sum_probs=84.9
Q ss_pred cCcCCCCccEEEEeCCCCC-ccC----ccccCCCCCcEEEccCCCCCccCCc---------------c--cccccEEEee
Q 041335 186 EIACLSSLTGLHLSGNNFE-SLP----ASIKQLSQLSSLDLKDCKMLQSLPE---------------L--PLCLKSLDLM 243 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~-~lP----~~~~~l~~L~~L~Ls~c~~l~~lP~---------------i--~~~L~~L~L~ 243 (594)
.+-..|+|++|+||.|.+- .-+ .-++.+..|+.|.|.+|. ++.... + .++|+++...
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 5666779999999999765 222 235678999999999885 332211 1 2478888887
Q ss_pred cCCCCcccCCC--------CCCccEEEeeCCCCCCcCCCC----------CCCccEEeeecCCCCC--------Cchhhh
Q 041335 244 DCKILQSLPAL--------PLCLESLALTGCNMLRSIPEL----------PLCLKYLNLEDCNMLR--------SLPELS 297 (594)
Q Consensus 244 ~c~~l~~lp~~--------~~~L~~L~Ls~c~~l~~lp~~----------~~~L~~L~Ls~c~~~~--------~L~~l~ 297 (594)
.|. +..-+.. ...|+.+.++.|..- |+. .++|+.|||.+|-+.. .++.+.
T Consensus 166 rNr-len~ga~~~A~~~~~~~~leevr~~qN~I~---~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~ 241 (382)
T KOG1909|consen 166 RNR-LENGGATALAEAFQSHPTLEEVRLSQNGIR---PEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWP 241 (382)
T ss_pred ccc-cccccHHHHHHHHHhccccceEEEeccccc---CchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccc
Confidence 766 4443322 116777777765322 221 3778888888887764 333333
Q ss_pred ccccccccccccccc--------ccCccccccccccccccc
Q 041335 298 LCLQSLNARNCNRLR--------SLPEIPSCLQELDASVLE 330 (594)
Q Consensus 298 ~~L~~L~L~~c~~L~--------~lp~l~~sL~~L~~~~c~ 330 (594)
.|+.|++++|..-. .+-+..++|+.|.+.+|.
T Consensus 242 -~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNe 281 (382)
T KOG1909|consen 242 -HLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNE 281 (382)
T ss_pred -hheeecccccccccccHHHHHHHHhccCCCCceeccCcch
Confidence 57778888775321 122234556666655553
No 51
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=94.68 E-value=0.0044 Score=64.64 Aligned_cols=78 Identities=19% Similarity=0.271 Sum_probs=39.7
Q ss_pred CccEEEeeCCCCCCcCC-----CCCCCccEEeeecCCCCCCch-----hhhcccccccccccccccc-----cCcccccc
Q 041335 257 CLESLALTGCNMLRSIP-----ELPLCLKYLNLEDCNMLRSLP-----ELSLCLQSLNARNCNRLRS-----LPEIPSCL 321 (594)
Q Consensus 257 ~L~~L~Ls~c~~l~~lp-----~~~~~L~~L~Ls~c~~~~~L~-----~l~~~L~~L~L~~c~~L~~-----lp~l~~sL 321 (594)
.|+.|+.++|+.+...+ ....+|+.|-+++|...+..- .....|+.|++..|-.... +....+.|
T Consensus 295 ~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l 374 (483)
T KOG4341|consen 295 ALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL 374 (483)
T ss_pred HhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence 56777777776654333 223677777777776433111 1111455555555543222 22224455
Q ss_pred cccccccccccCC
Q 041335 322 QELDASVLEKLSK 334 (594)
Q Consensus 322 ~~L~~~~c~~L~~ 334 (594)
+.|.++.|...+.
T Consensus 375 r~lslshce~itD 387 (483)
T KOG4341|consen 375 RVLSLSHCELITD 387 (483)
T ss_pred ccCChhhhhhhhh
Confidence 5555655554443
No 52
>PRK04841 transcriptional regulator MalT; Provisional
Probab=93.61 E-value=0.3 Score=58.21 Aligned_cols=126 Identities=14% Similarity=0.209 Sum_probs=82.2
Q ss_pred HHHHHHHHHhCCChHHHHHHHccCC-CHHHHHHHHHHhhhhcCCChhhHHHHHHHh-hcCCCHhHHhHhhhhccccCCCC
Q 041335 21 RDSRRVVKYADGNPLVLKVLGSSLK-RKSHWGNVLDDLNRICESDIHNIYDILKIS-FNELTPRVKSIFLDIACFFEGED 98 (594)
Q Consensus 21 ~l~~~iv~~c~GlPLAlkvlgs~L~-~~~~W~~~l~~l~~~~~~~i~~~~~~L~~S-yd~L~~~~K~~Fl~~a~Fp~~~~ 98 (594)
+...++.+.++|.|+++..++..+. ....-......+...+...+ .+.+.-. ++.||+..+..++..|+++ ..+
T Consensus 206 ~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~ 281 (903)
T PRK04841 206 AESSRLCDDVEGWATALQLIALSARQNNSSLHDSARRLAGINASHL---SDYLVEEVLDNVDLETRHFLLRCSVLR-SMN 281 (903)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCCchhhhhHhhcCCCchhH---HHHHHHHHHhcCCHHHHHHHHHhcccc-cCC
Confidence 4457899999999999999987776 21100111111111112233 5544433 7899999999999999986 555
Q ss_pred hhHHHHHhhh-hhhhhhhHHhhcCCceecccCCCCeEEecHHHHHHHHHHHhh
Q 041335 99 KDFLARILDD-SESDGLDVLIDKSLISISEKWADKLLQMHDILQEMGREIVRQ 150 (594)
Q Consensus 99 ~~~v~~~l~~-~~~~~i~~Lv~~sli~~~~~~~~~~~~mHdLl~~~~~~i~~~ 150 (594)
.+.+..+... .+...+..|.+.+++..........+++|+|++++.+.-...
T Consensus 282 ~~l~~~l~~~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~ 334 (903)
T PRK04841 282 DALIVRVTGEENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQW 334 (903)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHh
Confidence 5544444433 567788999999997543211134789999999998876533
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=93.60 E-value=0.12 Score=49.31 Aligned_cols=53 Identities=23% Similarity=0.387 Sum_probs=33.2
Q ss_pred CccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc-c---cccccEEEeecCC
Q 041335 192 SLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE-L---PLCLKSLDLMDCK 246 (594)
Q Consensus 192 ~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i---~~~L~~L~L~~c~ 246 (594)
+...++++.|.+..++ .|..++.|.+|.|.+|. +..+-. + .++|..|.|.+|+
T Consensus 43 ~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNs 99 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNS 99 (233)
T ss_pred ccceecccccchhhcc-cCCCccccceEEecCCc-ceeeccchhhhccccceEEecCcc
Confidence 5667777777766554 55667777777777544 544432 2 3566777776654
No 54
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=93.51 E-value=0.026 Score=61.13 Aligned_cols=117 Identities=29% Similarity=0.394 Sum_probs=81.0
Q ss_pred CCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc-cc--ccccEEEeecCCCCcccCCCCC--CccEEEe
Q 041335 189 CLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE-LP--LCLKSLDLMDCKILQSLPALPL--CLESLAL 263 (594)
Q Consensus 189 ~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i~--~~L~~L~L~~c~~l~~lp~~~~--~L~~L~L 263 (594)
.+..+..+.+..|.++.+-..++.+++|+.|++.+|. +..+.. +. .+|+.|++++|. +..+...-. .|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~-i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNK-IEKIENLLSSLVNLQVLDLSFNK-ITKLEGLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhhhhcccccccceeeeeccccc-hhhcccchhhhhcchheeccccc-cccccchhhccchhhhee
Confidence 4556777778888888755568889999999999765 777766 44 699999999977 444443222 6888999
Q ss_pred eCCCCCCcCCCC--CCCccEEeeecCCCCCCch---hhhccccccccccc
Q 041335 264 TGCNMLRSIPEL--PLCLKYLNLEDCNMLRSLP---ELSLCLQSLNARNC 308 (594)
Q Consensus 264 s~c~~l~~lp~~--~~~L~~L~Ls~c~~~~~L~---~l~~~L~~L~L~~c 308 (594)
++ +.+..++.. +.+|+.+++++|.+..-=+ ....+|+.+.+.++
T Consensus 148 ~~-N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 148 SG-NLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGN 196 (414)
T ss_pred cc-CcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCC
Confidence 98 455556543 6788888888887664222 22225666666653
No 55
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=92.37 E-value=0.017 Score=51.60 Aligned_cols=73 Identities=27% Similarity=0.413 Sum_probs=45.5
Q ss_pred CCccEEEEeCCCCCccCccccC-CCCCcEEEccCCCCCccCCc-cc--ccccEEEeecCCCCcccCCCCC---CccEEEe
Q 041335 191 SSLTGLHLSGNNFESLPASIKQ-LSQLSSLDLKDCKMLQSLPE-LP--LCLKSLDLMDCKILQSLPALPL---CLESLAL 263 (594)
Q Consensus 191 ~~L~~L~l~~~~l~~lP~~~~~-l~~L~~L~Ls~c~~l~~lP~-i~--~~L~~L~L~~c~~l~~lp~~~~---~L~~L~L 263 (594)
.+|+..++++|.++.+|..|.. .+.+++|+|++|. +..+|. +. +.|+.|+++.|. +...|.-+. +|-.|+.
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcC
Confidence 3566677777777777776653 3467777777544 777776 43 577777777765 444554444 4444444
Q ss_pred eC
Q 041335 264 TG 265 (594)
Q Consensus 264 s~ 265 (594)
.+
T Consensus 131 ~~ 132 (177)
T KOG4579|consen 131 PE 132 (177)
T ss_pred CC
Confidence 44
No 56
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=91.91 E-value=0.1 Score=29.10 Aligned_cols=16 Identities=50% Similarity=0.717 Sum_probs=6.8
Q ss_pred CccEEEEeCCCCCccC
Q 041335 192 SLTGLHLSGNNFESLP 207 (594)
Q Consensus 192 ~L~~L~l~~~~l~~lP 207 (594)
+|+.|++++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555554
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=90.43 E-value=0.14 Score=58.70 Aligned_cols=34 Identities=32% Similarity=0.603 Sum_probs=18.7
Q ss_pred cCCCCccEEEEeCCCCCccCccccCCCCCcEEEcc
Q 041335 188 ACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLK 222 (594)
Q Consensus 188 ~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls 222 (594)
.++|+|+.||+++++++.+ ..+++|++|+.|.+.
T Consensus 170 ~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mr 203 (699)
T KOG3665|consen 170 ASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMR 203 (699)
T ss_pred hccCccceeecCCCCccCc-HHHhccccHHHHhcc
Confidence 3455555555555555555 455555555555554
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=90.15 E-value=0.6 Score=44.70 Aligned_cols=61 Identities=26% Similarity=0.355 Sum_probs=35.6
Q ss_pred cccCcCCCCccEEEEeCCCCCccCcccc-CCCCCcEEEccCCCCCccCCcc-----cccccEEEeecC
Q 041335 184 LQEIACLSSLTGLHLSGNNFESLPASIK-QLSQLSSLDLKDCKMLQSLPEL-----PLCLKSLDLMDC 245 (594)
Q Consensus 184 l~~l~~L~~L~~L~l~~~~l~~lP~~~~-~l~~L~~L~Ls~c~~l~~lP~i-----~~~L~~L~L~~c 245 (594)
++.|..++.|.+|.+..|.|+.+-+.+. -+++|..|.|.+|+ +.++.++ .++|++|.+-+|
T Consensus 57 l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll~N 123 (233)
T KOG1644|consen 57 LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLLGN 123 (233)
T ss_pred cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeeecCC
Confidence 3466667777777777777776644443 35567777777543 5444331 134555554443
No 59
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=90.09 E-value=0.011 Score=61.74 Aligned_cols=143 Identities=24% Similarity=0.255 Sum_probs=81.7
Q ss_pred CccEEEEeCCC---CCccCccccCCCCCcEEEccCCCCCccCCc-----ccccccEEEeecCCCCccc-----CCCCCCc
Q 041335 192 SLTGLHLSGNN---FESLPASIKQLSQLSSLDLKDCKMLQSLPE-----LPLCLKSLDLMDCKILQSL-----PALPLCL 258 (594)
Q Consensus 192 ~L~~L~l~~~~---l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-----i~~~L~~L~L~~c~~l~~l-----p~~~~~L 258 (594)
.|+.|.+.|+. ..++-....+.++++.|++.+|.+++..-- ...+|+.|++..|.++... -.+..+|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 56777777763 224444456788888888888886654432 2368888888888766543 2222278
Q ss_pred cEEEeeCCCCCCc-----CCCCCCCccEEeeecCCCCC--Cchhh---hcccccccccccccccccCc-----ccccccc
Q 041335 259 ESLALTGCNMLRS-----IPELPLCLKYLNLEDCNMLR--SLPEL---SLCLQSLNARNCNRLRSLPE-----IPSCLQE 323 (594)
Q Consensus 259 ~~L~Ls~c~~l~~-----lp~~~~~L~~L~Ls~c~~~~--~L~~l---~~~L~~L~L~~c~~L~~lp~-----l~~sL~~ 323 (594)
++|+++.|..+.. +-.....|+.+.+.+|.-.+ .|... ..-+..+++.+|..++...- ....|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 8888888876654 11222345556555664433 11111 11345555666665555432 1344566
Q ss_pred cccccccccCC
Q 041335 324 LDASVLEKLSK 334 (594)
Q Consensus 324 L~~~~c~~L~~ 334 (594)
|..++|..+..
T Consensus 299 l~~s~~t~~~d 309 (483)
T KOG4341|consen 299 LCYSSCTDITD 309 (483)
T ss_pred hcccCCCCCch
Confidence 66666665443
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=89.32 E-value=0.24 Score=56.95 Aligned_cols=101 Identities=20% Similarity=0.271 Sum_probs=67.8
Q ss_pred CCCCccEEEEeCCCCC--ccCccccCCCCCcEEEccCCCCCccCCccc--ccccEEEeecCCCCcccC---CCCC--Ccc
Q 041335 189 CLSSLTGLHLSGNNFE--SLPASIKQLSQLSSLDLKDCKMLQSLPELP--LCLKSLDLMDCKILQSLP---ALPL--CLE 259 (594)
Q Consensus 189 ~L~~L~~L~l~~~~l~--~lP~~~~~l~~L~~L~Ls~c~~l~~lP~i~--~~L~~L~L~~c~~l~~lp---~~~~--~L~ 259 (594)
-||.|+.|.+++-.+. .+-.-..++++|..||+|+ ++++.+-.+. ++|+.|.+.+-. .+.-. ..+. +|+
T Consensus 146 ~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl~GIS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~ 223 (699)
T KOG3665|consen 146 MLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG-TNISNLSGISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLR 223 (699)
T ss_pred hCcccceEEecCceecchhHHHHhhccCccceeecCC-CCccCcHHHhccccHHHHhccCCC-CCchhhHHHHhcccCCC
Confidence 3789999999986553 2233446889999999997 4577775554 578888776633 22222 1122 899
Q ss_pred EEEeeCCCCCCc---------CCCCCCCccEEeeecCCCCC
Q 041335 260 SLALTGCNMLRS---------IPELPLCLKYLNLEDCNMLR 291 (594)
Q Consensus 260 ~L~Ls~c~~l~~---------lp~~~~~L~~L~Ls~c~~~~ 291 (594)
.||+|.-.+... .+..+|.|+.||.|+..+.+
T Consensus 224 vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 224 VLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred eeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 999998544332 12335899999999877665
No 61
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.92 E-value=0.22 Score=50.25 Aligned_cols=20 Identities=15% Similarity=-0.184 Sum_probs=14.0
Q ss_pred cccccccccccccccCCCCc
Q 041335 318 PSCLQELDASVLEKLSKPSL 337 (594)
Q Consensus 318 ~~sL~~L~~~~c~~L~~~~~ 337 (594)
.++|..|.+.+.+.+..+..
T Consensus 248 f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 248 FPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred CchhheeeccCCcccccccC
Confidence 56777888877776665543
No 62
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=88.71 E-value=0.28 Score=27.29 Aligned_cols=16 Identities=50% Similarity=0.827 Sum_probs=7.1
Q ss_pred CCcEEEccCCCCCccCC
Q 041335 215 QLSSLDLKDCKMLQSLP 231 (594)
Q Consensus 215 ~L~~L~Ls~c~~l~~lP 231 (594)
+|+.|+|++|. ++++|
T Consensus 2 ~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp T-SEEEETSS---SSE-
T ss_pred ccCEEECCCCC-CCCCc
Confidence 56666666655 55444
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=88.37 E-value=0.75 Score=45.97 Aligned_cols=48 Identities=25% Similarity=0.373 Sum_probs=35.3
Q ss_pred cccCcCCCCccEEEEeCCCCC-ccCc----cccCCCCCcEEEccCCCCCccCCc
Q 041335 184 LQEIACLSSLTGLHLSGNNFE-SLPA----SIKQLSQLSSLDLKDCKMLQSLPE 232 (594)
Q Consensus 184 l~~l~~L~~L~~L~l~~~~l~-~lP~----~~~~l~~L~~L~Ls~c~~l~~lP~ 232 (594)
++.+-.+|+|+..++|.|.+. ..|+ -++.-+.|++|.|++|. ++.+..
T Consensus 85 l~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG 137 (388)
T COG5238 85 LKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAG 137 (388)
T ss_pred HHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccch
Confidence 346677899999999999876 3443 35778899999999765 665543
No 64
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=87.84 E-value=0.021 Score=51.04 Aligned_cols=72 Identities=21% Similarity=0.297 Sum_probs=44.6
Q ss_pred CccEEEEeCCCCCccCc---cccCCCCCcEEEccCCCCCccCCc-cc---ccccEEEeecCCCCcccCCCCC---CccEE
Q 041335 192 SLTGLHLSGNNFESLPA---SIKQLSQLSSLDLKDCKMLQSLPE-LP---LCLKSLDLMDCKILQSLPALPL---CLESL 261 (594)
Q Consensus 192 ~L~~L~l~~~~l~~lP~---~~~~l~~L~~L~Ls~c~~l~~lP~-i~---~~L~~L~L~~c~~l~~lp~~~~---~L~~L 261 (594)
.+..|+++.|++-.++. .+.....|...+|++|. ++.+|. +. +.++.|+|++|. +..+|..+. .|+.|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSL 105 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhc
Confidence 35677888888776654 44556667777888765 777776 32 466677776654 555555433 44444
Q ss_pred EeeC
Q 041335 262 ALTG 265 (594)
Q Consensus 262 ~Ls~ 265 (594)
+++.
T Consensus 106 Nl~~ 109 (177)
T KOG4579|consen 106 NLRF 109 (177)
T ss_pred cccc
Confidence 4444
No 65
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=87.56 E-value=0.24 Score=29.52 Aligned_cols=9 Identities=44% Similarity=0.479 Sum_probs=3.8
Q ss_pred ccEEEeecC
Q 041335 237 LKSLDLMDC 245 (594)
Q Consensus 237 L~~L~L~~c 245 (594)
|++|++++|
T Consensus 2 L~~Ldls~n 10 (22)
T PF00560_consen 2 LEYLDLSGN 10 (22)
T ss_dssp ESEEEETSS
T ss_pred ccEEECCCC
Confidence 344444444
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=86.74 E-value=0.45 Score=47.14 Aligned_cols=78 Identities=29% Similarity=0.360 Sum_probs=38.8
Q ss_pred CccEEEEeCCCCCccCccccCCCCCcEEEccCCC--CCccCCc---ccccccEEEeecCCC--CcccCCCCC--CccEEE
Q 041335 192 SLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCK--MLQSLPE---LPLCLKSLDLMDCKI--LQSLPALPL--CLESLA 262 (594)
Q Consensus 192 ~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~--~l~~lP~---i~~~L~~L~L~~c~~--l~~lp~~~~--~L~~L~ 262 (594)
.|..|.+.+..++++ ..|-.|++|++|.++.|. -...++- ..++|++|++++|+. +.++++.-. +|..|+
T Consensus 44 ~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ld 122 (260)
T KOG2739|consen 44 ELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLD 122 (260)
T ss_pred chhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhh
Confidence 344444444444333 233356677777777652 2222222 236777777777652 122222111 677777
Q ss_pred eeCCCCCC
Q 041335 263 LTGCNMLR 270 (594)
Q Consensus 263 Ls~c~~l~ 270 (594)
+..|....
T Consensus 123 l~n~~~~~ 130 (260)
T KOG2739|consen 123 LFNCSVTN 130 (260)
T ss_pred cccCCccc
Confidence 77775443
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=86.51 E-value=0.48 Score=46.94 Aligned_cols=78 Identities=28% Similarity=0.400 Sum_probs=42.9
Q ss_pred CCCCCcEEEccCCCCCccCCccc--ccccEEEeecCC--CCcccCCCC---CCccEEEeeCCCC--CCcCCC--CCCCcc
Q 041335 212 QLSQLSSLDLKDCKMLQSLPELP--LCLKSLDLMDCK--ILQSLPALP---LCLESLALTGCNM--LRSIPE--LPLCLK 280 (594)
Q Consensus 212 ~l~~L~~L~Ls~c~~l~~lP~i~--~~L~~L~L~~c~--~l~~lp~~~---~~L~~L~Ls~c~~--l~~lp~--~~~~L~ 280 (594)
.+..|+.|.+.++. ++.+-.++ ++|+.|.++.|. ....++... .+|++|++++|.. +.+++. .+.+|.
T Consensus 41 ~~~~le~ls~~n~g-ltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 41 EFVELELLSVINVG-LTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred cccchhhhhhhccc-eeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 44555566665433 33333322 578888888773 222222221 2788888888532 233332 236778
Q ss_pred EEeeecCCCC
Q 041335 281 YLNLEDCNML 290 (594)
Q Consensus 281 ~L~Ls~c~~~ 290 (594)
.|++.+|.-.
T Consensus 120 ~Ldl~n~~~~ 129 (260)
T KOG2739|consen 120 SLDLFNCSVT 129 (260)
T ss_pred hhhcccCCcc
Confidence 8888877544
No 68
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=86.50 E-value=0.23 Score=51.10 Aligned_cols=103 Identities=20% Similarity=0.178 Sum_probs=61.4
Q ss_pred CcCCCCccEEEEeCCCCCccC-----ccccCCCCCcEEEccCCCCCccCCc-c------cccccEEEeecCCCCcc----
Q 041335 187 IACLSSLTGLHLSGNNFESLP-----ASIKQLSQLSSLDLKDCKMLQSLPE-L------PLCLKSLDLMDCKILQS---- 250 (594)
Q Consensus 187 l~~L~~L~~L~l~~~~l~~lP-----~~~~~l~~L~~L~Ls~c~~l~~lP~-i------~~~L~~L~L~~c~~l~~---- 250 (594)
...-++||++....|.+..-+ ..|...+.|+.+.+++|..-..=-. + .++|+.|||.+|.....
T Consensus 153 ~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~ 232 (382)
T KOG1909|consen 153 AASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA 232 (382)
T ss_pred cCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHH
Confidence 445568999999999877544 3466778899998887652211101 1 26888888888774321
Q ss_pred ----cCCCCCCccEEEeeCCCCCC--------cCCCCCCCccEEeeecCCCC
Q 041335 251 ----LPALPLCLESLALTGCNMLR--------SIPELPLCLKYLNLEDCNML 290 (594)
Q Consensus 251 ----lp~~~~~L~~L~Ls~c~~l~--------~lp~~~~~L~~L~Ls~c~~~ 290 (594)
+|. +.+|+.|++++|..-. .+-...++|+.|.|.+|.+.
T Consensus 233 LakaL~s-~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 233 LAKALSS-WPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred HHHHhcc-cchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 221 1156777777764321 12222456666666666554
No 69
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=83.98 E-value=1 Score=44.97 Aligned_cols=15 Identities=33% Similarity=0.583 Sum_probs=8.0
Q ss_pred CCCccEEEEeCCCCC
Q 041335 190 LSSLTGLHLSGNNFE 204 (594)
Q Consensus 190 L~~L~~L~l~~~~l~ 204 (594)
+..+..+++|||.+.
T Consensus 29 ~d~~~evdLSGNtig 43 (388)
T COG5238 29 MDELVEVDLSGNTIG 43 (388)
T ss_pred hcceeEEeccCCccc
Confidence 334555666666543
No 70
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=83.28 E-value=0.68 Score=28.62 Aligned_cols=20 Identities=45% Similarity=0.675 Sum_probs=13.4
Q ss_pred CCCccEEEEeCCCCCccCcc
Q 041335 190 LSSLTGLHLSGNNFESLPAS 209 (594)
Q Consensus 190 L~~L~~L~l~~~~l~~lP~~ 209 (594)
|++|++|++++|.++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777654
No 71
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=83.28 E-value=0.68 Score=28.62 Aligned_cols=20 Identities=45% Similarity=0.675 Sum_probs=13.4
Q ss_pred CCCccEEEEeCCCCCccCcc
Q 041335 190 LSSLTGLHLSGNNFESLPAS 209 (594)
Q Consensus 190 L~~L~~L~l~~~~l~~lP~~ 209 (594)
|++|++|++++|.++.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777654
No 72
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=82.35 E-value=0.23 Score=54.24 Aligned_cols=101 Identities=33% Similarity=0.457 Sum_probs=48.7
Q ss_pred CCCccEEEEeCCC-CCc--cCccccCCCCCcEEEccCC-CCCccCCc-------ccccccEEEeecCCCCcccC-----C
Q 041335 190 LSSLTGLHLSGNN-FES--LPASIKQLSQLSSLDLKDC-KMLQSLPE-------LPLCLKSLDLMDCKILQSLP-----A 253 (594)
Q Consensus 190 L~~L~~L~l~~~~-l~~--lP~~~~~l~~L~~L~Ls~c-~~l~~lP~-------i~~~L~~L~L~~c~~l~~lp-----~ 253 (594)
++.|+.|.+.++. +.. +-......++|+.|++++| ......+. ...+|+.|+++.|..+...- .
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 4556666665552 332 2233445666666666652 22222221 11466666666665322110 0
Q ss_pred CCCCccEEEeeCCCCCCc-----CCCCCCCccEEeeecCCCC
Q 041335 254 LPLCLESLALTGCNMLRS-----IPELPLCLKYLNLEDCNML 290 (594)
Q Consensus 254 ~~~~L~~L~Ls~c~~l~~-----lp~~~~~L~~L~Ls~c~~~ 290 (594)
.-.+|++|.+.+|..+.. +-...++|++|+|++|...
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 001566666666655321 1122355777777766554
No 73
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.07 E-value=0.49 Score=47.82 Aligned_cols=37 Identities=35% Similarity=0.354 Sum_probs=23.2
Q ss_pred CcCCCCccEEEEeCCCCCccCccc-cCCCCCcEEEccC
Q 041335 187 IACLSSLTGLHLSGNNFESLPASI-KQLSQLSSLDLKD 223 (594)
Q Consensus 187 l~~L~~L~~L~l~~~~l~~lP~~~-~~l~~L~~L~Ls~ 223 (594)
+.+||.|++|+++.|++.+.-.++ -.+.+|++|-|.|
T Consensus 93 le~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNg 130 (418)
T KOG2982|consen 93 LEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNG 130 (418)
T ss_pred HhcCccceEeeccCCcCCCccccCcccccceEEEEEcC
Confidence 456778888888887665322222 3456777777765
No 74
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=74.21 E-value=0.67 Score=50.49 Aligned_cols=101 Identities=27% Similarity=0.423 Sum_probs=64.1
Q ss_pred cCCCCCcEEEccCCCCCccCC--c---ccccccEEEeecC-CCCcccCCC---C----CCccEEEeeCCCCCCcCC----
Q 041335 211 KQLSQLSSLDLKDCKMLQSLP--E---LPLCLKSLDLMDC-KILQSLPAL---P----LCLESLALTGCNMLRSIP---- 273 (594)
Q Consensus 211 ~~l~~L~~L~Ls~c~~l~~lP--~---i~~~L~~L~L~~c-~~l~~lp~~---~----~~L~~L~Ls~c~~l~~lp---- 273 (594)
...++|+.|.+.+|..+.... . -.+.|+.|++++| ......+.. + .+|+.|++++|..+...-
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 347899999999998777633 2 2268999999884 332222211 1 178888888887644322
Q ss_pred -CCCCCccEEeeecCCC-CC-Cchhh---hcccccccccccccc
Q 041335 274 -ELPLCLKYLNLEDCNM-LR-SLPEL---SLCLQSLNARNCNRL 311 (594)
Q Consensus 274 -~~~~~L~~L~Ls~c~~-~~-~L~~l---~~~L~~L~L~~c~~L 311 (594)
...++|+.|.+.+|.. +. .+..+ ...|+.|+|+.|..+
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred HhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 2246888888888874 32 12211 125888888888776
No 75
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=71.55 E-value=0.24 Score=49.48 Aligned_cols=35 Identities=31% Similarity=0.369 Sum_probs=19.5
Q ss_pred CCCCccEEEEeCCCCCccCccccCCCCCcEEEccCC
Q 041335 189 CLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDC 224 (594)
Q Consensus 189 ~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c 224 (594)
.++.|.+|.|+-|.+++| ..+..+++|+.|+|..|
T Consensus 39 kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN 73 (388)
T KOG2123|consen 39 KMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKN 73 (388)
T ss_pred hcccceeEEeeccccccc-hhHHHHHHHHHHHHHhc
Confidence 455566666666666555 23455555666555544
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=67.92 E-value=20 Score=31.04 Aligned_cols=73 Identities=15% Similarity=0.300 Sum_probs=34.0
Q ss_pred CcCCCCccEEEEeCCCCCccCc-cccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCCCC----C
Q 041335 187 IACLSSLTGLHLSGNNFESLPA-SIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPALPL----C 257 (594)
Q Consensus 187 l~~L~~L~~L~l~~~~l~~lP~-~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~~~----~ 257 (594)
|...++|+.+.+.. .++.++. .|..+++|+.+.+.+ .+..++. +. ++|+.+.+.+ .+..++.... +
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~ 82 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTN 82 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TT
T ss_pred HhCCCCCCEEEECC-CeeEeChhhcccccccccccccc--cccccceeeeecccccccccccc--ccccccccccccccc
Confidence 45566777777764 4555543 466777777777764 2666655 22 3566666643 3444444332 5
Q ss_pred ccEEEee
Q 041335 258 LESLALT 264 (594)
Q Consensus 258 L~~L~Ls 264 (594)
|+.+.+.
T Consensus 83 l~~i~~~ 89 (129)
T PF13306_consen 83 LKNIDIP 89 (129)
T ss_dssp ECEEEET
T ss_pred ccccccC
Confidence 5555553
No 77
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=63.92 E-value=3.9 Score=25.56 Aligned_cols=17 Identities=47% Similarity=0.692 Sum_probs=12.3
Q ss_pred CccEEEEeCCCCCccCc
Q 041335 192 SLTGLHLSGNNFESLPA 208 (594)
Q Consensus 192 ~L~~L~l~~~~l~~lP~ 208 (594)
+|++|+.++|+++++|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 57777777777777775
No 78
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.56 E-value=0.8 Score=45.92 Aligned_cols=91 Identities=25% Similarity=0.218 Sum_probs=62.3
Q ss_pred CCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCcc--cccccEEEeecCCCCcccCCC-----CCCccEEE
Q 041335 190 LSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPEL--PLCLKSLDLMDCKILQSLPAL-----PLCLESLA 262 (594)
Q Consensus 190 L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~i--~~~L~~L~L~~c~~l~~lp~~-----~~~L~~L~ 262 (594)
|.+.+.|+..||.+..+- -...|+.|+.|.||-|+ +..+..+ .++|+.|.|..|. +.++-+. ..+|+.|.
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNk-IssL~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNK-ISSLAPLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeeccc-cccchhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHh
Confidence 446677888888887662 34578999999999765 6666553 3688888888765 3333321 11788888
Q ss_pred eeCCCCCCcCCCC--------CCCccEEe
Q 041335 263 LTGCNMLRSIPEL--------PLCLKYLN 283 (594)
Q Consensus 263 Ls~c~~l~~lp~~--------~~~L~~L~ 283 (594)
|..|.-.+.-+.. +++|+.||
T Consensus 95 L~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 95 LDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hccCCcccccchhHHHHHHHHcccchhcc
Confidence 8887776665543 47788775
No 79
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=55.05 E-value=8.4 Score=23.72 Aligned_cols=15 Identities=33% Similarity=0.671 Sum_probs=10.1
Q ss_pred CCCcEEEccCCCCCc
Q 041335 214 SQLSSLDLKDCKMLQ 228 (594)
Q Consensus 214 ~~L~~L~Ls~c~~l~ 228 (594)
++|+.|+|++|..++
T Consensus 2 ~~L~~L~l~~C~~it 16 (26)
T smart00367 2 PNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCEeCCCCCCCcC
Confidence 567777777776554
No 80
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=46.15 E-value=27 Score=36.35 Aligned_cols=102 Identities=19% Similarity=0.193 Sum_probs=60.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHccCCCHHHHHHHHHHhhhhcCCChhhHHHHHHHhhcCCCHhHHhHhh-hhccccCCC-C
Q 041335 21 RDSRRVVKYADGNPLVLKVLGSSLKRKSHWGNVLDDLNRICESDIHNIYDILKISFNELTPRVKSIFL-DIACFFEGE-D 98 (594)
Q Consensus 21 ~l~~~iv~~c~GlPLAlkvlgs~L~~~~~W~~~l~~l~~~~~~~i~~~~~~L~~Syd~L~~~~K~~Fl-~~a~Fp~~~-~ 98 (594)
+....|+++|+|.|-.+..+... ...|..+- .-.......++...+.+...|.+|+..++..+. ....|..+. .
T Consensus 203 ~~~~~ia~~~~G~pR~a~~~l~~---~~~~a~~~-~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~ 278 (328)
T PRK00080 203 EGALEIARRSRGTPRIANRLLRR---VRDFAQVK-GDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVG 278 (328)
T ss_pred HHHHHHHHHcCCCchHHHHHHHH---HHHHHHHc-CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCcee
Confidence 45677888888888544433322 12222111 001111222344566677788999998888775 556666553 5
Q ss_pred hhHHHHHhhh---hhhhhhh-HHhhcCCceec
Q 041335 99 KDFLARILDD---SESDGLD-VLIDKSLISIS 126 (594)
Q Consensus 99 ~~~v~~~l~~---~~~~~i~-~Lv~~sli~~~ 126 (594)
.+.+...+.. .++.-+. .|++++||+..
T Consensus 279 ~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 279 LDTLAAALGEERDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred HHHHHHHHCCCcchHHHHhhHHHHHcCCcccC
Confidence 6777776655 4444566 89999999744
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.22 E-value=6.1 Score=37.97 Aligned_cols=14 Identities=29% Similarity=0.719 Sum_probs=7.8
Q ss_pred CccEEEeeCCCCCC
Q 041335 257 CLESLALTGCNMLR 270 (594)
Q Consensus 257 ~L~~L~Ls~c~~l~ 270 (594)
+++.|.+.+|..+.
T Consensus 126 ~i~~l~l~~ck~~d 139 (221)
T KOG3864|consen 126 SIKSLSLANCKYFD 139 (221)
T ss_pred hhhhheeccccchh
Confidence 35566666665543
No 82
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=39.20 E-value=66 Score=32.81 Aligned_cols=101 Identities=15% Similarity=0.112 Sum_probs=57.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHccCCCHHHHHHHHHH-hhhhcCCChhhHHHHHHHhhcCCCHhHHhHhh-hhccccCC-C
Q 041335 21 RDSRRVVKYADGNPLVLKVLGSSLKRKSHWGNVLDD-LNRICESDIHNIYDILKISFNELTPRVKSIFL-DIACFFEG-E 97 (594)
Q Consensus 21 ~l~~~iv~~c~GlPLAlkvlgs~L~~~~~W~~~l~~-l~~~~~~~i~~~~~~L~~Syd~L~~~~K~~Fl-~~a~Fp~~-~ 97 (594)
+....|++.|+|.|-.+..++.. .|..+... -.......++...+.+...|.+|+..++..+. .++.+..+ .
T Consensus 182 ~al~~ia~~~~G~pR~~~~ll~~-----~~~~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~ 256 (305)
T TIGR00635 182 EAALEIARRSRGTPRIANRLLRR-----VRDFAQVRGQKIINRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPV 256 (305)
T ss_pred HHHHHHHHHhCCCcchHHHHHHH-----HHHHHHHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcc
Confidence 44566777888888554444321 23222110 01111122233455567788999998887665 55666433 3
Q ss_pred ChhHHHHHhhh---hhhhhhh-HHhhcCCceec
Q 041335 98 DKDFLARILDD---SESDGLD-VLIDKSLISIS 126 (594)
Q Consensus 98 ~~~~v~~~l~~---~~~~~i~-~Lv~~sli~~~ 126 (594)
..+.+...+.. .+...+. .|++++||...
T Consensus 257 ~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 257 GLKTLAAALGEDADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred cHHHHHHHhCCCcchHHHhhhHHHHHcCCcccC
Confidence 55666666655 4555566 69999999744
No 83
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=37.54 E-value=78 Score=27.19 Aligned_cols=74 Identities=16% Similarity=0.335 Sum_probs=43.8
Q ss_pred cCcCCCCccEEEEeCCCCCccCc-cccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCCCC---C
Q 041335 186 EIACLSSLTGLHLSGNNFESLPA-SIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPALPL---C 257 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~~lP~-~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~~~---~ 257 (594)
.|..+++|+.+.+..+ ++.++. .|.++++|+.+.+.+ .+..++. +. ++|+.+++.. .+..++.... .
T Consensus 30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~f~~~~ 104 (129)
T PF13306_consen 30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNIDIPS--NITEIGSSSFSNCN 104 (129)
T ss_dssp TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEEETT--T-BEEHTTTTTT-T
T ss_pred hccccccccccccccc-ccccceeeeecccccccccccc--cccccccccccccccccccccCc--cccEEchhhhcCCC
Confidence 5677778999999875 777654 577888899999974 4666665 32 6888888864 2555655443 5
Q ss_pred ccEEEee
Q 041335 258 LESLALT 264 (594)
Q Consensus 258 L~~L~Ls 264 (594)
|+.+.+.
T Consensus 105 l~~i~~~ 111 (129)
T PF13306_consen 105 LKEINIP 111 (129)
T ss_dssp --EEE-T
T ss_pred ceEEEEC
Confidence 6665554
No 84
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=35.12 E-value=26 Score=20.89 Aligned_cols=12 Identities=33% Similarity=0.598 Sum_probs=6.4
Q ss_pred CCCcEEEccCCC
Q 041335 214 SQLSSLDLKDCK 225 (594)
Q Consensus 214 ~~L~~L~Ls~c~ 225 (594)
++|++|+|++|.
T Consensus 2 ~~L~~L~l~~n~ 13 (24)
T PF13516_consen 2 PNLETLDLSNNQ 13 (24)
T ss_dssp TT-SEEE-TSSB
T ss_pred CCCCEEEccCCc
Confidence 566777776654
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=33.93 E-value=26 Score=21.89 Aligned_cols=14 Identities=36% Similarity=0.522 Sum_probs=7.6
Q ss_pred CCccEEEEeCCCCC
Q 041335 191 SSLTGLHLSGNNFE 204 (594)
Q Consensus 191 ~~L~~L~l~~~~l~ 204 (594)
.+|+.|+++.|.|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555554
No 86
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.90 E-value=19 Score=34.74 Aligned_cols=15 Identities=33% Similarity=0.758 Sum_probs=9.2
Q ss_pred CccEEEeeCCCCCCc
Q 041335 257 CLESLALTGCNMLRS 271 (594)
Q Consensus 257 ~L~~L~Ls~c~~l~~ 271 (594)
+|+.|+|+||..+++
T Consensus 152 ~L~~L~lsgC~rIT~ 166 (221)
T KOG3864|consen 152 SLQDLDLSGCPRITD 166 (221)
T ss_pred chheeeccCCCeech
Confidence 666666666665553
No 87
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=30.54 E-value=28 Score=38.46 Aligned_cols=61 Identities=28% Similarity=0.323 Sum_probs=33.5
Q ss_pred CCCCCcEEEccCCCCCccCCc------ccccccEEEeecCCCCc----ccCCCCC-CccEEEeeCCCCCCcCC
Q 041335 212 QLSQLSSLDLKDCKMLQSLPE------LPLCLKSLDLMDCKILQ----SLPALPL-CLESLALTGCNMLRSIP 273 (594)
Q Consensus 212 ~l~~L~~L~Ls~c~~l~~lP~------i~~~L~~L~L~~c~~l~----~lp~~~~-~L~~L~Ls~c~~l~~lp 273 (594)
+.+.+..++|++|. +..+-. +.++|+.|+|++|.+.. +++..-+ -|++|.+.||+..+++-
T Consensus 216 n~p~i~sl~lsnNr-L~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~ 287 (585)
T KOG3763|consen 216 NFPEILSLSLSNNR-LYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFS 287 (585)
T ss_pred CCcceeeeecccch-hhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchh
Confidence 45556666666543 433332 33677777777763222 2222222 67777777776655443
No 88
>COG3899 Predicted ATPase [General function prediction only]
Probab=30.12 E-value=1.1e+02 Score=36.32 Aligned_cols=128 Identities=18% Similarity=0.316 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHccCC---------CHHHHHHHHHHhhhhcCCChhhHHHHHHHhhcCCCHhHHhHhhh
Q 041335 19 FKRDSRRVVKYADGNPLVLKVLGSSLK---------RKSHWGNVLDDLNRICESDIHNIYDILKISFNELTPRVKSIFLD 89 (594)
Q Consensus 19 ~~~l~~~iv~~c~GlPLAlkvlgs~L~---------~~~~W~~~l~~l~~~~~~~i~~~~~~L~~Syd~L~~~~K~~Fl~ 89 (594)
-.++...|+++.+|+|+-+.-+-..|+ +...|.--..++.... ..+.+.+.|..--+.||...|++.-.
T Consensus 239 ~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~--~~~~vv~~l~~rl~kL~~~t~~Vl~~ 316 (849)
T COG3899 239 PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILA--TTDAVVEFLAARLQKLPGTTREVLKA 316 (849)
T ss_pred cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCch--hhHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 467888999999999998877666665 2233443333222211 12223667888899999999999999
Q ss_pred hccccCCCChhHHHHHhhh----hhhhhhhHHhhcCCceecccC---CCC----eEEecHHHHHHHHHHH
Q 041335 90 IACFFEGEDKDFLARILDD----SESDGLDVLIDKSLISISEKW---ADK----LLQMHDILQEMGREIV 148 (594)
Q Consensus 90 ~a~Fp~~~~~~~v~~~l~~----~~~~~i~~Lv~~sli~~~~~~---~~~----~~~mHdLl~~~~~~i~ 148 (594)
.||+-..++.+.+..++.. .+..-.+.|.+..++..++.+ ... +---||++|+.+-...
T Consensus 317 AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i 386 (849)
T COG3899 317 AACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLI 386 (849)
T ss_pred HHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccC
Confidence 9999999999988888875 444455556655555433211 011 1146888887765543
No 89
>PF13730 HTH_36: Helix-turn-helix domain
Probab=25.42 E-value=1.2e+02 Score=21.97 Aligned_cols=46 Identities=26% Similarity=0.430 Sum_probs=30.6
Q ss_pred CCCHhHHhHhhhhccccCCC-----ChhHHHHHhhh---hhhhhhhHHhhcCCc
Q 041335 78 ELTPRVKSIFLDIACFFEGE-----DKDFLARILDD---SESDGLDVLIDKSLI 123 (594)
Q Consensus 78 ~L~~~~K~~Fl~~a~Fp~~~-----~~~~v~~~l~~---~~~~~i~~Lv~~sli 123 (594)
+|++.++.++.+++-+..+. ..+.+.+...- .....+++|+++++|
T Consensus 2 ~Ls~~~~~v~~~l~~~~~~~~~~~pS~~~la~~~g~s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 2 NLSPTAKLVYLYLASYANKNGGCFPSQETLAKDLGVSRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCC
Confidence 57778888888887776433 23444444332 566788999999875
No 90
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=24.29 E-value=50 Score=20.72 Aligned_cols=14 Identities=21% Similarity=0.283 Sum_probs=9.9
Q ss_pred CCccEEeeecCCCC
Q 041335 277 LCLKYLNLEDCNML 290 (594)
Q Consensus 277 ~~L~~L~Ls~c~~~ 290 (594)
++|+.|+|++|.+.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 46778888877664
Done!