Query 041335
Match_columns 594
No_of_seqs 498 out of 3982
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 09:58:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041335.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041335hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.8 2E-19 6.7E-24 199.6 7.7 147 1-153 298-473 (549)
2 3sfz_A APAF-1, apoptotic pepti 99.6 2.5E-16 8.6E-21 190.2 9.9 148 1-151 291-452 (1249)
3 4fcg_A Uncharacterized protein 99.6 4.7E-15 1.6E-19 153.5 12.6 155 182-338 118-296 (328)
4 4fcg_A Uncharacterized protein 99.6 3.2E-14 1.1E-18 147.2 15.5 174 182-363 95-291 (328)
5 1z6t_A APAF-1, apoptotic prote 99.5 4.9E-15 1.7E-19 165.6 9.1 176 1-179 291-499 (591)
6 1vt4_I APAF-1 related killer D 99.4 9E-14 3.1E-18 159.1 7.4 123 1-144 303-436 (1221)
7 3rgz_A Protein brassinosteroid 99.3 3.9E-12 1.3E-16 146.5 10.8 114 257-370 633-759 (768)
8 2xwt_C Thyrotropin receptor; s 99.3 1.3E-11 4.3E-16 121.3 12.5 148 186-337 50-222 (239)
9 3rgz_A Protein brassinosteroid 99.3 9.3E-12 3.2E-16 143.4 12.0 112 183-294 434-555 (768)
10 1ogq_A PGIP-2, polygalacturona 99.3 4E-12 1.4E-16 130.4 7.9 146 185-330 95-255 (313)
11 3g06_A SSPH2 (leucine-rich rep 99.3 7.4E-11 2.5E-15 132.1 17.5 30 299-329 222-251 (622)
12 1ogq_A PGIP-2, polygalacturona 99.2 4.6E-12 1.6E-16 130.0 5.3 156 182-337 116-286 (313)
13 4ezg_A Putative uncharacterize 99.2 4.3E-11 1.5E-15 114.0 11.2 140 188-330 41-192 (197)
14 3g06_A SSPH2 (leucine-rich rep 99.2 1.4E-10 4.8E-15 129.9 15.6 130 191-328 81-210 (622)
15 3cvr_A Invasion plasmid antige 99.2 1.2E-10 4.2E-15 128.9 14.8 139 191-338 80-225 (571)
16 3zyi_A Leucine-rich repeat-con 99.2 9.6E-11 3.3E-15 126.3 13.6 148 186-336 118-282 (452)
17 4eco_A Uncharacterized protein 99.2 3.1E-11 1.1E-15 136.0 9.0 152 183-337 198-394 (636)
18 3rfs_A Internalin B, repeat mo 99.2 1.7E-10 5.6E-15 115.8 12.7 143 183-330 55-216 (272)
19 3zyj_A Leucine-rich repeat-con 99.1 1.7E-10 5.9E-15 123.8 13.2 147 186-336 107-271 (440)
20 3zyi_A Leucine-rich repeat-con 99.1 1.7E-10 5.7E-15 124.4 12.8 144 184-330 92-253 (452)
21 4ecn_A Leucine-rich repeat pro 99.1 6.3E-11 2.2E-15 137.3 9.9 150 183-336 440-635 (876)
22 3zyj_A Leucine-rich repeat-con 99.1 2.2E-10 7.4E-15 123.1 12.9 143 184-330 81-242 (440)
23 2o6q_A Variable lymphocyte rec 99.1 4.1E-10 1.4E-14 112.7 14.0 141 191-336 37-197 (270)
24 4eco_A Uncharacterized protein 99.1 4.5E-11 1.6E-15 134.7 7.6 130 205-337 197-370 (636)
25 2o6q_A Variable lymphocyte rec 99.1 6.4E-10 2.2E-14 111.3 15.2 141 186-330 56-216 (270)
26 3cvr_A Invasion plasmid antige 99.1 2.4E-10 8.1E-15 126.6 12.9 137 192-337 60-197 (571)
27 1xeu_A Internalin C; cellular 99.1 1.1E-10 3.8E-15 116.6 9.3 139 186-330 36-183 (263)
28 2xwt_C Thyrotropin receptor; s 99.1 2.2E-10 7.6E-15 112.3 11.3 145 192-338 32-198 (239)
29 1ozn_A Reticulon 4 receptor; N 99.1 2.9E-10 1E-14 114.5 12.5 150 185-336 50-217 (285)
30 1h6t_A Internalin B; cell adhe 99.1 2E-10 6.9E-15 116.5 10.4 140 185-330 62-211 (291)
31 1jl5_A Outer protein YOPM; leu 99.1 3.9E-10 1.3E-14 121.8 12.8 138 191-336 131-273 (454)
32 2z81_A CD282 antigen, TOLL-lik 99.1 2.5E-10 8.7E-15 125.7 11.6 148 183-336 325-489 (549)
33 3rfs_A Internalin B, repeat mo 99.1 4.5E-10 1.5E-14 112.6 11.6 145 186-336 36-197 (272)
34 1jl5_A Outer protein YOPM; leu 99.1 4.4E-10 1.5E-14 121.4 12.3 138 186-329 148-307 (454)
35 2id5_A Lingo-1, leucine rich r 99.1 6.9E-10 2.4E-14 120.2 13.8 150 185-336 50-217 (477)
36 2z66_A Variable lymphocyte rec 99.1 3E-10 1E-14 115.5 10.3 149 184-334 71-238 (306)
37 1p9a_G Platelet glycoprotein I 99.1 6.4E-10 2.2E-14 112.7 12.5 143 191-338 31-190 (290)
38 3bz5_A Internalin-J, INLJ; leu 99.1 5.5E-10 1.9E-14 120.7 12.5 150 186-340 165-328 (457)
39 1m9s_A Internalin B; cell inva 99.1 2.3E-10 8E-15 127.8 9.7 146 181-332 55-210 (605)
40 2z80_A TOLL-like receptor 2, v 99.0 4.5E-10 1.5E-14 116.8 10.7 122 186-309 95-233 (353)
41 2id5_A Lingo-1, leucine rich r 99.0 8.9E-10 3.1E-14 119.3 13.4 151 184-336 73-240 (477)
42 2ft3_A Biglycan; proteoglycan, 99.0 1.2E-09 4.2E-14 112.5 13.8 79 186-266 73-157 (332)
43 1xku_A Decorin; proteoglycan, 99.0 8.1E-10 2.8E-14 113.7 12.2 140 186-329 71-226 (330)
44 1h6u_A Internalin H; cell adhe 99.0 2.9E-10 9.9E-15 116.3 8.6 139 185-329 57-205 (308)
45 1h6u_A Internalin H; cell adhe 99.0 6.7E-10 2.3E-14 113.5 11.3 139 186-330 36-184 (308)
46 2o6s_A Variable lymphocyte rec 99.0 1.3E-09 4.3E-14 104.5 12.1 140 191-337 28-183 (208)
47 1ozn_A Reticulon 4 receptor; N 99.0 8.7E-10 3E-14 111.0 11.5 143 184-330 73-236 (285)
48 4ay9_X Follicle-stimulating ho 99.0 2.1E-09 7.2E-14 111.8 14.6 149 187-338 50-220 (350)
49 2z66_A Variable lymphocyte rec 99.0 2.4E-10 8.2E-15 116.3 7.1 142 187-330 48-210 (306)
50 2z80_A TOLL-like receptor 2, v 99.0 3.4E-10 1.2E-14 117.7 8.3 142 186-330 71-233 (353)
51 2z62_A TOLL-like receptor 4, v 99.0 1.4E-09 4.9E-14 108.9 12.4 148 186-337 47-217 (276)
52 3vq2_A TLR4, TOLL-like recepto 99.0 6.5E-10 2.2E-14 124.0 10.3 154 184-338 369-539 (606)
53 4ecn_A Leucine-rich repeat pro 99.0 7.4E-10 2.5E-14 128.4 10.8 150 183-336 481-661 (876)
54 2o6s_A Variable lymphocyte rec 99.0 2.2E-09 7.4E-14 102.9 12.4 137 186-330 47-196 (208)
55 2z7x_B TOLL-like receptor 1, v 99.0 8.5E-10 2.9E-14 120.7 10.7 143 192-337 303-461 (520)
56 3m19_A Variable lymphocyte rec 99.0 3E-09 1E-13 105.1 13.4 136 191-330 35-190 (251)
57 1m9s_A Internalin B; cell inva 99.0 6.2E-10 2.1E-14 124.3 9.4 173 156-335 8-190 (605)
58 1wwl_A Monocyte differentiatio 99.0 2.6E-10 9E-15 116.6 5.8 147 189-337 93-270 (312)
59 1xku_A Decorin; proteoglycan, 99.0 3.5E-09 1.2E-13 108.9 14.1 148 184-337 93-257 (330)
60 3oja_A Leucine-rich immune mol 99.0 4E-10 1.4E-14 122.8 7.3 104 185-291 52-158 (487)
61 1wwl_A Monocyte differentiatio 99.0 1.2E-09 4E-14 111.8 10.3 150 183-336 111-290 (312)
62 3vq2_A TLR4, TOLL-like recepto 99.0 3E-10 1E-14 126.7 6.3 147 186-333 345-511 (606)
63 1p9a_G Platelet glycoprotein I 99.0 2.2E-09 7.5E-14 108.8 12.0 141 184-329 48-205 (290)
64 3bz5_A Internalin-J, INLJ; leu 99.0 3.8E-09 1.3E-13 114.1 14.2 148 187-338 123-305 (457)
65 3o6n_A APL1; leucine-rich repe 99.0 3.2E-09 1.1E-13 111.9 13.2 80 186-266 88-175 (390)
66 2ft3_A Biglycan; proteoglycan, 99.0 3.4E-09 1.2E-13 109.1 13.2 148 184-337 95-258 (332)
67 4fmz_A Internalin; leucine ric 99.0 2.3E-09 8E-14 110.8 11.8 141 185-329 60-209 (347)
68 3t6q_A CD180 antigen; protein- 99.0 3.5E-09 1.2E-13 118.1 13.8 145 186-331 273-437 (606)
69 2z81_A CD282 antigen, TOLL-lik 99.0 1.9E-09 6.6E-14 118.6 11.4 143 186-333 356-511 (549)
70 4b8c_D Glucose-repressible alc 98.9 6.3E-10 2.2E-14 127.1 7.5 141 183-329 216-369 (727)
71 4ezg_A Putative uncharacterize 98.9 1.6E-09 5.6E-14 103.0 9.1 122 186-309 61-192 (197)
72 4glp_A Monocyte differentiatio 98.9 6.7E-10 2.3E-14 113.4 6.8 144 188-335 114-287 (310)
73 3e6j_A Variable lymphocyte rec 98.9 4.2E-09 1.4E-13 102.8 12.1 98 191-291 40-149 (229)
74 3m19_A Variable lymphocyte rec 98.9 4.6E-09 1.6E-13 103.8 12.3 125 185-312 53-193 (251)
75 4ay9_X Follicle-stimulating ho 98.9 2.9E-09 9.8E-14 110.8 11.3 149 186-337 74-241 (350)
76 3v47_A TOLL-like receptor 5B a 98.9 1.6E-09 5.6E-14 116.3 9.7 83 186-268 74-166 (455)
77 2z62_A TOLL-like receptor 4, v 98.9 1.9E-09 6.5E-14 108.0 9.5 142 185-329 70-234 (276)
78 4fmz_A Internalin; leucine ric 98.9 2.2E-09 7.4E-14 111.0 10.1 141 186-331 172-323 (347)
79 3v47_A TOLL-like receptor 5B a 98.9 1.8E-09 6.1E-14 115.9 9.4 139 192-330 31-191 (455)
80 3o53_A Protein LRIM1, AGAP0063 98.9 7.5E-10 2.6E-14 113.5 6.1 59 185-246 52-110 (317)
81 3a79_B TLR6, VLRB.59, TOLL-lik 98.9 3.3E-09 1.1E-13 117.5 11.6 141 192-336 332-489 (562)
82 2v9t_B SLIT homolog 2 protein 98.9 6.4E-09 2.2E-13 100.8 11.7 99 191-291 32-142 (220)
83 3j0a_A TOLL-like receptor 5; m 98.9 1.1E-08 3.9E-13 118.8 15.9 106 186-291 43-162 (844)
84 3oja_B Anopheles plasmodium-re 98.9 4.1E-09 1.4E-13 117.7 11.6 102 188-291 72-185 (597)
85 2ell_A Acidic leucine-rich nuc 98.9 3.4E-09 1.2E-13 97.9 8.7 100 190-291 23-134 (168)
86 2z63_A TOLL-like receptor 4, v 98.9 1.5E-09 5.2E-14 119.8 7.2 147 188-336 344-510 (570)
87 3o6n_A APL1; leucine-rich repe 98.9 5.4E-09 1.8E-13 110.1 11.1 140 187-330 65-216 (390)
88 3oja_B Anopheles plasmodium-re 98.9 4.3E-09 1.5E-13 117.5 10.8 141 185-330 93-243 (597)
89 2v9t_B SLIT homolog 2 protein 98.9 9.2E-09 3.2E-13 99.7 11.8 132 193-329 13-162 (220)
90 3t6q_A CD180 antigen; protein- 98.9 4.9E-09 1.7E-13 116.9 10.9 150 182-331 292-461 (606)
91 4g8a_A TOLL-like receptor 4; l 98.9 4.1E-09 1.4E-13 117.5 9.8 121 190-314 50-188 (635)
92 1h6t_A Internalin B; cell adhe 98.9 5.5E-09 1.9E-13 105.8 9.6 171 153-329 8-188 (291)
93 3oja_A Leucine-rich immune mol 98.8 2.8E-09 9.6E-14 116.1 7.7 139 189-330 32-180 (487)
94 2ast_B S-phase kinase-associat 98.8 4.5E-10 1.5E-14 115.6 1.3 147 185-331 87-259 (336)
95 3o53_A Protein LRIM1, AGAP0063 98.8 1.8E-09 6E-14 110.7 5.7 140 188-330 31-180 (317)
96 3j0a_A TOLL-like receptor 5; m 98.8 2.2E-08 7.6E-13 116.3 14.9 141 190-330 23-185 (844)
97 3e6j_A Variable lymphocyte rec 98.8 2.2E-08 7.6E-13 97.6 12.5 131 192-329 20-169 (229)
98 2z7x_B TOLL-like receptor 1, v 98.8 1E-08 3.5E-13 112.1 11.2 143 192-337 248-438 (520)
99 3a79_B TLR6, VLRB.59, TOLL-lik 98.8 1.8E-08 6E-13 111.6 12.8 103 185-289 70-181 (562)
100 1xeu_A Internalin C; cellular 98.8 9.6E-09 3.3E-13 102.5 9.5 121 185-310 57-184 (263)
101 1o6v_A Internalin A; bacterial 98.8 2.3E-08 7.7E-13 108.1 12.4 140 185-329 193-341 (466)
102 4glp_A Monocyte differentiatio 98.8 1.2E-08 3.9E-13 104.2 9.6 147 190-338 90-269 (310)
103 1ziw_A TOLL-like receptor 3; i 98.8 1.5E-08 5.1E-13 114.6 11.2 79 187-266 69-155 (680)
104 2xot_A Amphoterin-induced prot 98.8 2.3E-08 7.8E-13 104.4 11.2 121 192-315 40-179 (361)
105 2z63_A TOLL-like receptor 4, v 98.8 5.3E-09 1.8E-13 115.5 6.5 141 188-331 322-482 (570)
106 2v70_A SLIT-2, SLIT homolog 2 98.8 1.8E-08 6.2E-13 97.6 9.6 54 192-246 33-92 (220)
107 1o6v_A Internalin A; bacterial 98.8 1.9E-08 6.6E-13 108.6 10.8 143 186-333 216-367 (466)
108 1ziw_A TOLL-like receptor 3; i 98.7 2.4E-08 8.3E-13 112.9 11.5 123 186-310 44-183 (680)
109 2je0_A Acidic leucine-rich nuc 98.7 8.5E-09 2.9E-13 93.1 6.2 99 190-290 16-126 (149)
110 4b8c_D Glucose-repressible alc 98.7 1.1E-09 3.9E-14 125.0 0.4 121 183-308 239-369 (727)
111 2xot_A Amphoterin-induced prot 98.7 5E-08 1.7E-12 101.8 10.7 104 186-291 58-177 (361)
112 1a9n_A U2A', U2A'; complex (nu 98.7 2.6E-08 8.9E-13 92.8 7.5 102 186-290 14-126 (176)
113 2ast_B S-phase kinase-associat 98.7 2.3E-09 7.8E-14 110.3 0.2 143 191-333 70-236 (336)
114 2v70_A SLIT-2, SLIT homolog 2 98.7 5.1E-08 1.7E-12 94.4 9.6 106 186-292 52-168 (220)
115 1w8a_A SLIT protein; signaling 98.7 1.2E-07 4E-12 89.7 11.8 101 192-294 30-143 (192)
116 2ell_A Acidic leucine-rich nuc 98.6 5.1E-08 1.7E-12 89.9 8.3 106 182-290 40-160 (168)
117 1dce_A Protein (RAB geranylger 98.6 3.4E-08 1.2E-12 109.5 7.9 95 192-291 442-547 (567)
118 2wfh_A SLIT homolog 2 protein 98.6 1.2E-07 4.2E-12 89.8 10.1 98 191-291 31-140 (193)
119 1w8a_A SLIT protein; signaling 98.6 1.3E-07 4.5E-12 89.4 10.2 115 193-310 10-138 (192)
120 2o6r_A Variable lymphocyte rec 98.6 2.8E-07 9.6E-12 85.6 11.1 101 191-294 28-141 (177)
121 2wfh_A SLIT homolog 2 protein 98.5 4.2E-07 1.4E-11 86.1 10.9 94 193-291 12-116 (193)
122 4g8a_A TOLL-like receptor 4; l 98.5 3.4E-07 1.1E-11 101.9 10.9 144 186-330 392-553 (635)
123 2o6r_A Variable lymphocyte rec 98.5 6.8E-07 2.3E-11 83.0 10.9 115 192-311 8-137 (177)
124 2ca6_A RAN GTPase-activating p 98.5 1.4E-08 4.9E-13 106.7 -1.3 38 188-225 91-133 (386)
125 2je0_A Acidic leucine-rich nuc 98.4 1.1E-07 3.8E-12 85.6 4.6 101 183-286 34-149 (149)
126 1dce_A Protein (RAB geranylger 98.4 2.7E-07 9.4E-12 102.2 8.0 96 186-284 458-567 (567)
127 2r9u_A Variable lymphocyte rec 98.4 1.3E-06 4.5E-11 81.2 10.2 95 193-292 14-120 (174)
128 1ds9_A Outer arm dynein; leuci 98.4 5.3E-09 1.8E-13 99.5 -6.7 100 186-290 43-153 (198)
129 1a9n_A U2A', U2A'; complex (nu 98.3 4E-07 1.4E-11 84.6 6.0 101 185-289 35-152 (176)
130 1ds9_A Outer arm dynein; leuci 98.3 1.8E-08 6.1E-13 95.8 -3.6 121 192-315 24-157 (198)
131 2ca6_A RAN GTPase-activating p 98.3 8.2E-08 2.8E-12 100.9 1.0 60 187-246 56-133 (386)
132 3g39_A Variable lymphocyte rec 98.3 3.1E-06 1.1E-10 78.2 10.8 97 192-293 10-118 (170)
133 3goz_A Leucine-rich repeat-con 98.2 2.1E-07 7.1E-12 97.0 0.7 40 186-225 45-91 (362)
134 2r9u_A Variable lymphocyte rec 98.2 3.4E-06 1.2E-10 78.3 8.6 82 183-268 27-117 (174)
135 3g39_A Variable lymphocyte rec 98.2 4.8E-06 1.6E-10 76.9 8.6 77 191-269 30-115 (170)
136 3goz_A Leucine-rich repeat-con 98.1 5.6E-07 1.9E-11 93.7 1.4 138 191-330 80-264 (362)
137 1z7x_W Ribonuclease inhibitor; 98.1 2.8E-07 9.7E-12 98.7 -1.6 104 187-291 24-156 (461)
138 2ifg_A High affinity nerve gro 98.1 8.5E-06 2.9E-10 84.0 9.3 94 195-291 12-117 (347)
139 2ifg_A High affinity nerve gro 98.0 8E-06 2.7E-10 84.2 8.1 83 183-268 24-115 (347)
140 1z7x_W Ribonuclease inhibitor; 98.0 2.8E-07 9.7E-12 98.8 -4.1 146 184-330 220-409 (461)
141 2p1m_B Transport inhibitor res 97.9 8.8E-07 3E-11 98.1 -2.5 57 190-246 104-167 (594)
142 3sb4_A Hypothetical leucine ri 97.9 1.8E-05 6.2E-10 81.0 7.4 32 213-246 100-135 (329)
143 2p1m_B Transport inhibitor res 97.8 2.3E-06 7.9E-11 94.7 -0.7 140 187-326 62-242 (594)
144 3ogk_B Coronatine-insensitive 97.6 1.9E-05 6.6E-10 87.2 2.9 12 277-288 293-304 (592)
145 3ogk_B Coronatine-insensitive 97.5 2E-05 6.9E-10 87.1 1.7 59 187-246 239-304 (592)
146 3sb4_A Hypothetical leucine ri 97.4 0.00026 8.9E-09 72.3 8.0 41 190-232 100-141 (329)
147 3e4g_A ATP synthase subunit S, 97.3 0.0002 7E-09 66.3 5.6 58 191-248 61-127 (176)
148 2ra8_A Uncharacterized protein 97.2 0.00011 3.7E-09 76.5 3.1 122 186-308 134-289 (362)
149 3e4g_A ATP synthase subunit S, 97.2 0.00023 7.9E-09 65.9 4.4 57 276-333 84-153 (176)
150 3un9_A NLR family member X1; l 97.2 9.8E-06 3.4E-10 84.8 -6.1 137 191-330 72-250 (372)
151 4fdw_A Leucine rich hypothetic 97.1 0.0038 1.3E-07 65.7 13.3 70 192-265 158-235 (401)
152 2ra8_A Uncharacterized protein 96.8 0.00089 3.1E-08 69.5 5.2 102 187-291 168-293 (362)
153 3un9_A NLR family member X1; l 96.7 7.8E-05 2.7E-09 77.9 -3.9 116 191-309 101-250 (372)
154 3rw6_A Nuclear RNA export fact 96.1 0.0032 1.1E-07 62.3 4.0 14 212-225 168-181 (267)
155 1io0_A Tropomodulin; LRR prote 95.8 0.0012 4E-08 61.6 -0.9 60 186-246 31-104 (185)
156 4fdw_A Leucine rich hypothetic 95.6 0.036 1.2E-06 58.1 9.8 88 192-286 136-235 (401)
157 1io0_A Tropomodulin; LRR prote 92.1 0.019 6.6E-07 53.2 -1.0 40 186-225 60-104 (185)
158 3rw6_A Nuclear RNA export fact 91.6 0.15 5E-06 50.3 4.7 12 235-246 170-181 (267)
159 3rfe_A Platelet glycoprotein I 91.6 0.21 7.3E-06 43.3 5.2 14 277-290 55-68 (130)
160 3rfe_A Platelet glycoprotein I 87.9 0.74 2.5E-05 39.8 5.7 48 218-267 12-66 (130)
161 2qen_A Walker-type ATPase; unk 87.7 1.7 5.7E-05 43.5 9.2 111 21-142 226-346 (350)
162 2fna_A Conserved hypothetical 86.2 2.2 7.6E-05 42.7 9.1 107 24-143 233-355 (357)
163 4h09_A Hypothetical leucine ri 82.3 4.8 0.00016 40.9 9.7 132 186-333 212-359 (379)
164 4fs7_A Uncharacterized protein 81.5 1.7 5.7E-05 44.8 5.9 37 186-223 157-194 (394)
165 4h09_A Hypothetical leucine ri 80.1 16 0.00054 36.9 12.8 115 210-338 213-341 (379)
166 4fs7_A Uncharacterized protein 79.8 5.2 0.00018 41.0 9.0 149 189-363 228-391 (394)
167 4gt6_A Cell surface protein; l 73.0 11 0.00038 38.5 9.2 10 327-336 375-384 (394)
168 1pgv_A TMD-1, tropomodulin TMD 66.2 1.3 4.3E-05 41.4 0.1 55 191-246 41-109 (197)
169 1w5s_A Origin recognition comp 56.0 14 0.0005 37.5 6.1 98 21-127 240-372 (412)
170 4gt6_A Cell surface protein; l 55.5 12 0.0004 38.3 5.3 96 186-287 260-367 (394)
171 1pgv_A TMD-1, tropomodulin TMD 55.4 2.1 7.2E-05 39.9 -0.5 36 211-246 38-81 (197)
172 2v1u_A Cell division control p 40.7 1.1E+02 0.0039 30.1 10.0 123 23-177 228-382 (387)
173 2qby_B CDC6 homolog 3, cell di 37.1 1.5E+02 0.005 29.4 10.1 112 3-127 204-340 (384)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.77 E-value=2e-19 Score=199.56 Aligned_cols=147 Identities=12% Similarity=0.142 Sum_probs=115.4
Q ss_pred CHhHHhhhhcCCCCCChhHHHHHHHHHHHhCCChHHHHHHHccCC-CHHHHHHHHHH-hhhhcCCChhhHHHHHHHhhcC
Q 041335 1 AFEHFCNFAFKENHCPEDFKRDSRRVVKYADGNPLVLKVLGSSLK-RKSHWGNVLDD-LNRICESDIHNIYDILKISFNE 78 (594)
Q Consensus 1 a~~LF~~~AF~~~~~~~~~~~l~~~iv~~c~GlPLAlkvlgs~L~-~~~~W~~~l~~-l~~~~~~~i~~~~~~L~~Syd~ 78 (594)
||+||+++||+... ++++++++++|+++|+|+||||+++|+.|+ ...+|...+.. ++..+...+ ..+|++||++
T Consensus 298 a~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~w~~~~~l~~~l~~~~~~~i---~~~l~~Sy~~ 373 (549)
T 2a5y_B 298 CYDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGV---ECITPYSYKS 373 (549)
T ss_dssp HHHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSSTT---CCCSSSSSSS
T ss_pred HHHHHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccchHHHHHHhHHHhhcccHHHH---HHHHhccccc
Confidence 68999999998643 478999999999999999999999999999 42233333332 222244555 8899999999
Q ss_pred CCHhHHhHhh-----------hhccccCCCChhHHHHHhhhh----------------hhhhhhHHhhcCCceecccCCC
Q 041335 79 LTPRVKSIFL-----------DIACFFEGEDKDFLARILDDS----------------ESDGLDVLIDKSLISISEKWAD 131 (594)
Q Consensus 79 L~~~~K~~Fl-----------~~a~Fp~~~~~~~v~~~l~~~----------------~~~~i~~Lv~~sli~~~~~~~~ 131 (594)
||.++|.||+ |||+||++++++ +++|.+. +..++++|+++||++.......
T Consensus 374 L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~~~~~~~ 451 (549)
T 2a5y_B 374 LAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPV 451 (549)
T ss_dssp HHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSEEECSSS
T ss_pred ccHHHHHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeEecCCCc
Confidence 9999999999 999999999887 4444332 1238999999999998754334
Q ss_pred CeEEecHHHHHHHHHHHhhccc
Q 041335 132 KLLQMHDILQEMGREIVRQESE 153 (594)
Q Consensus 132 ~~~~mHdLl~~~~~~i~~~e~~ 153 (594)
.+++|||++|++|++++.+++.
T Consensus 452 ~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 452 LTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp CEEECCHHHHHHHHTTSCTHHH
T ss_pred eEEEeChHHHHHHHHHHHHHHH
Confidence 5799999999999999877653
No 2
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.63 E-value=2.5e-16 Score=190.16 Aligned_cols=148 Identities=20% Similarity=0.313 Sum_probs=123.7
Q ss_pred CHhHHhhhhcCCCCCChhHHHHHHHHHHHhCCChHHHHHHHccCC-CHHHHHHHHHHhhhhcCCC--------hhhHHHH
Q 041335 1 AFEHFCNFAFKENHCPEDFKRDSRRVVKYADGNPLVLKVLGSSLK-RKSHWGNVLDDLNRICESD--------IHNIYDI 71 (594)
Q Consensus 1 a~~LF~~~AF~~~~~~~~~~~l~~~iv~~c~GlPLAlkvlgs~L~-~~~~W~~~l~~l~~~~~~~--------i~~~~~~ 71 (594)
|++||++.|+. +.+++.+++++|+++|+|+||||+++|+.|+ ...+|+.+++++....... .+.+..+
T Consensus 291 a~~l~~~~~~~---~~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 367 (1249)
T 3sfz_A 291 GLEILSLFVNM---KKEDLPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEA 367 (1249)
T ss_dssp HHHHHHHHHTS---CSTTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSSSCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHH
T ss_pred HHHHHHHhhCC---ChhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcChhHHHHHHHHHhhhhhhhcccccccchHHHHHH
Confidence 68999999954 3456678899999999999999999999999 6678999999997655332 2457999
Q ss_pred HHHhhcCCCHhHHhHhhhhccccCCCC--hhHHHHHhhh---hhhhhhhHHhhcCCceecccCCCCeEEecHHHHHHHHH
Q 041335 72 LKISFNELTPRVKSIFLDIACFFEGED--KDFLARILDD---SESDGLDVLIDKSLISISEKWADKLLQMHDILQEMGRE 146 (594)
Q Consensus 72 L~~Syd~L~~~~K~~Fl~~a~Fp~~~~--~~~v~~~l~~---~~~~~i~~Lv~~sli~~~~~~~~~~~~mHdLl~~~~~~ 146 (594)
|.+||+.|++++|.||+|||+||+++. .+.+..+|.. .++.++++|+++||++.........++||||+|+++++
T Consensus 368 l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~ 447 (1249)
T 3sfz_A 368 MSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTE 447 (1249)
T ss_dssp HHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHh
Confidence 999999999999999999999999974 5678888875 67889999999999998752212249999999999998
Q ss_pred HHhhc
Q 041335 147 IVRQE 151 (594)
Q Consensus 147 i~~~e 151 (594)
...++
T Consensus 448 ~~~~~ 452 (1249)
T 3sfz_A 448 KNRSQ 452 (1249)
T ss_dssp HTGGG
T ss_pred hhhHH
Confidence 86554
No 3
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.59 E-value=4.7e-15 Score=153.52 Aligned_cols=155 Identities=32% Similarity=0.422 Sum_probs=111.8
Q ss_pred eecccCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc-c-----------cccccEEEeecCCCCc
Q 041335 182 EILQEIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE-L-----------PLCLKSLDLMDCKILQ 249 (594)
Q Consensus 182 ~~l~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i-----------~~~L~~L~L~~c~~l~ 249 (594)
.+++.++.+++|++|++++|.++.+|..++++++|++|+|++|..++.+|. + .++|+.|++++|. +.
T Consensus 118 ~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~ 196 (328)
T 4fcg_A 118 ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG-IR 196 (328)
T ss_dssp CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CC
T ss_pred chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC-cC
Confidence 355667777778888888777777777777777888888877777777776 3 3577778887765 55
Q ss_pred ccCCCCC---CccEEEeeCCCCCCcCCCC---CCCccEEeeecCCCCCCchhhhc---ccccccccccccccccCcc---
Q 041335 250 SLPALPL---CLESLALTGCNMLRSIPEL---PLCLKYLNLEDCNMLRSLPELSL---CLQSLNARNCNRLRSLPEI--- 317 (594)
Q Consensus 250 ~lp~~~~---~L~~L~Ls~c~~l~~lp~~---~~~L~~L~Ls~c~~~~~L~~l~~---~L~~L~L~~c~~L~~lp~l--- 317 (594)
.+|..+. +|++|+|++|. +..+|.. +++|+.|+|++|++.+.+|.... +|+.|+|++|+.++.+|..
T Consensus 197 ~lp~~l~~l~~L~~L~L~~N~-l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~ 275 (328)
T 4fcg_A 197 SLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR 275 (328)
T ss_dssp CCCGGGGGCTTCCEEEEESSC-CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGG
T ss_pred cchHhhcCCCCCCEEEccCCC-CCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhc
Confidence 7776655 77888887754 3356543 36788888888887777665332 6788888888888877764
Q ss_pred cccccccccccccccCCCCcc
Q 041335 318 PSCLQELDASVLEKLSKPSLD 338 (594)
Q Consensus 318 ~~sL~~L~~~~c~~L~~~~~~ 338 (594)
.++|+.|++++|..++.+|..
T Consensus 276 l~~L~~L~L~~n~~~~~iP~~ 296 (328)
T 4fcg_A 276 LTQLEKLDLRGCVNLSRLPSL 296 (328)
T ss_dssp CTTCCEEECTTCTTCCCCCGG
T ss_pred CCCCCEEeCCCCCchhhccHH
Confidence 566778888888888777765
No 4
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.56 E-value=3.2e-14 Score=147.23 Aligned_cols=174 Identities=26% Similarity=0.391 Sum_probs=141.4
Q ss_pred eecccCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc-cc--ccccEEEeecCCCCcccCCCC---
Q 041335 182 EILQEIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE-LP--LCLKSLDLMDCKILQSLPALP--- 255 (594)
Q Consensus 182 ~~l~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i~--~~L~~L~L~~c~~l~~lp~~~--- 255 (594)
.+++.+..+++|++|++++|.++.+|..++.+++|++|+|++|. +..+|. +. ++|+.|++++|..++.+|..+
T Consensus 95 ~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~ 173 (328)
T 4fcg_A 95 QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLAST 173 (328)
T ss_dssp SCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE
T ss_pred hcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEECCCCCCccccChhHhhc
Confidence 36677888999999999999999999999999999999999876 668887 54 699999999999999999875
Q ss_pred --------C-CccEEEeeCCCCCCcCCCC---CCCccEEeeecCCCCCCchhhh--cccccccccccccccccCcc---c
Q 041335 256 --------L-CLESLALTGCNMLRSIPEL---PLCLKYLNLEDCNMLRSLPELS--LCLQSLNARNCNRLRSLPEI---P 318 (594)
Q Consensus 256 --------~-~L~~L~Ls~c~~l~~lp~~---~~~L~~L~Ls~c~~~~~L~~l~--~~L~~L~L~~c~~L~~lp~l---~ 318 (594)
. +|++|+|++| .+..+|.. +++|+.|+|++|.+.+-.+.+. .+|+.|+|++|+..+.+|.. +
T Consensus 174 ~~~~~~~~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l 252 (328)
T 4fcg_A 174 DASGEHQGLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR 252 (328)
T ss_dssp C-CCCEEESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCC
T ss_pred cchhhhccCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCC
Confidence 2 8999999997 45588864 4789999999999886333322 28999999999999999975 6
Q ss_pred ccccccccccccccCCCCcccccccCCCCCCCCceeeccCccccc
Q 041335 319 SCLQELDASVLEKLSKPSLDLIQWAPGCLESQPIYFGFTKCLKLN 363 (594)
Q Consensus 319 ~sL~~L~~~~c~~L~~~~~~~~~~~~~~~~~~~~~l~~~nC~~L~ 363 (594)
++|+.|++++|..++.++.....+. .+. .+.+.+|..+.
T Consensus 253 ~~L~~L~L~~n~~~~~~p~~~~~l~-----~L~-~L~L~~n~~~~ 291 (328)
T 4fcg_A 253 APLKRLILKDCSNLLTLPLDIHRLT-----QLE-KLDLRGCVNLS 291 (328)
T ss_dssp CCCCEEECTTCTTCCBCCTTGGGCT-----TCC-EEECTTCTTCC
T ss_pred CCCCEEECCCCCchhhcchhhhcCC-----CCC-EEeCCCCCchh
Confidence 7899999999999988886522211 111 56677766554
No 5
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.55 E-value=4.9e-15 Score=165.56 Aligned_cols=176 Identities=18% Similarity=0.226 Sum_probs=134.0
Q ss_pred CHhHHhhhhcCCCCCChhHHHHHHHHHHHhCCChHHHHHHHccCC-CHHHHHHHHHHhhhhcCCC--------hhhHHHH
Q 041335 1 AFEHFCNFAFKENHCPEDFKRDSRRVVKYADGNPLVLKVLGSSLK-RKSHWGNVLDDLNRICESD--------IHNIYDI 71 (594)
Q Consensus 1 a~~LF~~~AF~~~~~~~~~~~l~~~iv~~c~GlPLAlkvlgs~L~-~~~~W~~~l~~l~~~~~~~--------i~~~~~~ 71 (594)
|++||...++. +...+.+.+++|+++|+|+||||+++|+.|+ ...+|+.+++.+....... ...+..+
T Consensus 291 a~~L~~~~~~~---~~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~ 367 (591)
T 1z6t_A 291 GLEILSLFVNM---KKADLPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEA 367 (591)
T ss_dssp HHHHHHHHHTS---CGGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHSTTCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHH
T ss_pred HHHHHHHHhCC---CcccccHHHHHHHHHhCCCcHHHHHHHHHHhcCchhHHHHHHHHHHhHHHHhhhccccchHHHHHH
Confidence 57899999975 2334467889999999999999999999999 6668999999987654321 1357999
Q ss_pred HHHhhcCCCHhHHhHhhhhccccCCCCh--hHHHHHhhh---hhhhhhhHHhhcCCceecccCCCCeEEecHHHHHHHHH
Q 041335 72 LKISFNELTPRVKSIFLDIACFFEGEDK--DFLARILDD---SESDGLDVLIDKSLISISEKWADKLLQMHDILQEMGRE 146 (594)
Q Consensus 72 L~~Syd~L~~~~K~~Fl~~a~Fp~~~~~--~~v~~~l~~---~~~~~i~~Lv~~sli~~~~~~~~~~~~mHdLl~~~~~~ 146 (594)
+..||+.|+++.|.||+++|+||.|+++ +.+..+|.. .+...+..|+++||++........+++||+++++++++
T Consensus 368 l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~ 447 (591)
T 1z6t_A 368 MSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTE 447 (591)
T ss_dssp HHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHh
Confidence 9999999999999999999999998754 567777765 56778999999999997643223479999999998876
Q ss_pred HHh------------hcc-------ccCCCCceecCCchhHHHHHhccCccc
Q 041335 147 IVR------------QES-------EKQPGKRSRLWDPKEIRRVLKQKRNCA 179 (594)
Q Consensus 147 i~~------------~e~-------~~~~~~~~~l~~~~~i~~vl~~~~~~~ 179 (594)
... ... ...++.+..+|..+.++|++..+....
T Consensus 448 ~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~a~~~~~ 499 (591)
T 1z6t_A 448 KNCSQLQDLHKKIITQFQRYHQPHTLSPDQEDCMYWYNFLAYHMASAKMHKE 499 (591)
T ss_dssp HTGGGHHHHHHHHHHHHTTTCCGGGCCTTSTTHHHHHHHHHHHHHHTTCHHH
T ss_pred hhhhHHHHHHHHHHHHHHhhcCCCCCCCCCCCEEeehhhHHHHHHhcCCHHH
Confidence 621 111 112234445566677888877665443
No 6
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.43 E-value=9e-14 Score=159.14 Aligned_cols=123 Identities=19% Similarity=0.255 Sum_probs=100.0
Q ss_pred CHhHHhhhhcCCCCCChhHHHHHHHHHHHhCCChHHHHHHHccCC----CHHHHHHHHHHhhhhcCCChhhHHHHHHHhh
Q 041335 1 AFEHFCNFAFKENHCPEDFKRDSRRVVKYADGNPLVLKVLGSSLK----RKSHWGNVLDDLNRICESDIHNIYDILKISF 76 (594)
Q Consensus 1 a~~LF~~~AF~~~~~~~~~~~l~~~iv~~c~GlPLAlkvlgs~L~----~~~~W~~~l~~l~~~~~~~i~~~~~~L~~Sy 76 (594)
||+||+++ |+.. ..++..+| |+|+||||+++|+.|+ +.++|+.+ .. ..+..+|++||
T Consensus 303 A~eLF~~~-~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~-------~~---~~I~aaLelSY 363 (1221)
T 1vt4_I 303 VKSLLLKY-LDCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV-------NC---DKLTTIIESSL 363 (1221)
T ss_dssp HHHHHHHH-HCCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC-------SC---HHHHHHHHHHH
T ss_pred HHHHHHHH-cCCC-----HHHHHHHH---hCCCHHHHHHHHHHHhCCCCCHHHHhcC-------Ch---hHHHHHHHHHH
Confidence 68999998 4433 23444454 9999999999999998 46788764 12 45699999999
Q ss_pred cCCCHhH-HhHhhhhccccCCCCh--hHHHHHhhh----hhhhhhhHHhhcCCceecccCCCCeEEecHHHHHHH
Q 041335 77 NELTPRV-KSIFLDIACFFEGEDK--DFLARILDD----SESDGLDVLIDKSLISISEKWADKLLQMHDILQEMG 144 (594)
Q Consensus 77 d~L~~~~-K~~Fl~~a~Fp~~~~~--~~v~~~l~~----~~~~~i~~Lv~~sli~~~~~~~~~~~~mHdLl~~~~ 144 (594)
+.|++++ |.||++||+||+++++ +.+..+|.+ .+..++++|+++||++... ..++++||||+++++
T Consensus 364 d~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~--~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP--KESTISIPSIYLELK 436 (1221)
T ss_dssp HHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCS--SSSEEBCCCHHHHHH
T ss_pred HhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeC--CCCEEEehHHHHHHh
Confidence 9999999 9999999999999865 568888876 4778999999999999852 256899999998865
No 7
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.30 E-value=3.9e-12 Score=146.53 Aligned_cols=114 Identities=18% Similarity=0.141 Sum_probs=65.5
Q ss_pred CccEEEeeCCCCCCcCCCC---CCCccEEeeecCCCCCCchhhhc---ccccccccccccccccCcc---cccccccccc
Q 041335 257 CLESLALTGCNMLRSIPEL---PLCLKYLNLEDCNMLRSLPELSL---CLQSLNARNCNRLRSLPEI---PSCLQELDAS 327 (594)
Q Consensus 257 ~L~~L~Ls~c~~l~~lp~~---~~~L~~L~Ls~c~~~~~L~~l~~---~L~~L~L~~c~~L~~lp~l---~~sL~~L~~~ 327 (594)
+|+.|+|++|...+.+|.. +++|+.|+|++|.+.+.+|.... +|+.|+|++|+..+.+|.. +++|++|+++
T Consensus 633 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls 712 (768)
T 3rgz_A 633 SMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS 712 (768)
T ss_dssp CCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred cccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence 4566777776666666654 36677777777777777775433 6788888887777777765 4567888888
Q ss_pred cccccCCCCcccc--cccCCCCCCCCc-e-eeccCccccchhhhhhH
Q 041335 328 VLEKLSKPSLDLI--QWAPGCLESQPI-Y-FGFTKCLKLNGKANNKI 370 (594)
Q Consensus 328 ~c~~L~~~~~~~~--~~~~~~~~~~~~-~-l~~~nC~~L~~~~~~~i 370 (594)
+|...+.+|.... .+....+...+. | .-+..|..-..++|.+|
T Consensus 713 ~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~ 759 (768)
T 3rgz_A 713 NNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHH 759 (768)
T ss_dssp SSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC-------
T ss_pred CCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCCCccCCCCCC
Confidence 8877777765421 111111212211 1 11336776666666554
No 8
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.30 E-value=1.3e-11 Score=121.32 Aligned_cols=148 Identities=18% Similarity=0.207 Sum_probs=109.3
Q ss_pred cCcCCCCccEEEEeCCC-CCccCc-cccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCCCC---
Q 041335 186 EIACLSSLTGLHLSGNN-FESLPA-SIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPALPL--- 256 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~-l~~lP~-~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~~~--- 256 (594)
.+..+++|++|++++|. ++.+|+ .|+++++|++|+|++|..++.+|. +. ++|+.|++++|. +..+|. +.
T Consensus 50 ~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~-l~~lp~-~~~l~ 127 (239)
T 2xwt_C 50 AFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTG-LKMFPD-LTKVY 127 (239)
T ss_dssp TTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEEC-CCSCCC-CTTCC
T ss_pred HccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCC-Cccccc-ccccc
Confidence 57788889999999886 888775 688888999999987455777775 32 588999998876 566776 33
Q ss_pred Ccc---EEEeeCCCCCCcCCCC----CCCcc-EEeeecCCCCCCchhhh---cccccccccccccccccCcc----c-cc
Q 041335 257 CLE---SLALTGCNMLRSIPEL----PLCLK-YLNLEDCNMLRSLPELS---LCLQSLNARNCNRLRSLPEI----P-SC 320 (594)
Q Consensus 257 ~L~---~L~Ls~c~~l~~lp~~----~~~L~-~L~Ls~c~~~~~L~~l~---~~L~~L~L~~c~~L~~lp~l----~-~s 320 (594)
+|+ +|++++|..++.+|.. +++|+ .|++++|.+. .+|... .+|+.|+|++|+.++.+|.. . ++
T Consensus 128 ~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~ 206 (239)
T 2xwt_C 128 STDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG 206 (239)
T ss_dssp BCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBC
T ss_pred ccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccC
Confidence 666 8899987677777753 46788 8999888776 454321 27888999987667777643 4 67
Q ss_pred ccccccccccccCCCCc
Q 041335 321 LQELDASVLEKLSKPSL 337 (594)
Q Consensus 321 L~~L~~~~c~~L~~~~~ 337 (594)
|+.|+++++ .++.++.
T Consensus 207 L~~L~l~~N-~l~~l~~ 222 (239)
T 2xwt_C 207 PSLLDVSQT-SVTALPS 222 (239)
T ss_dssp CSEEECTTC-CCCCCCC
T ss_pred CcEEECCCC-ccccCCh
Confidence 888888875 3555543
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.28 E-value=9.3e-12 Score=143.37 Aligned_cols=112 Identities=23% Similarity=0.301 Sum_probs=69.6
Q ss_pred ecccCcCCCCccEEEEeCCCCC-ccCccccCCCCCcEEEccCCCCCccCCc-cc--ccccEEEeecCCCCcccCCCCC--
Q 041335 183 ILQEIACLSSLTGLHLSGNNFE-SLPASIKQLSQLSSLDLKDCKMLQSLPE-LP--LCLKSLDLMDCKILQSLPALPL-- 256 (594)
Q Consensus 183 ~l~~l~~L~~L~~L~l~~~~l~-~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i~--~~L~~L~L~~c~~l~~lp~~~~-- 256 (594)
.+..+..+++|++|++++|.++ .+|..++.+++|++|+|++|...+.+|. +. ++|+.|++++|...+.+|..++
T Consensus 434 ~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l 513 (768)
T 3rgz_A 434 IPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred ccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcC
Confidence 4456666777777777777766 5666677777777777776665555555 33 4666666666665556666554
Q ss_pred -CccEEEeeCCCCCCcCCCC---CCCccEEeeecCCCCCCch
Q 041335 257 -CLESLALTGCNMLRSIPEL---PLCLKYLNLEDCNMLRSLP 294 (594)
Q Consensus 257 -~L~~L~Ls~c~~l~~lp~~---~~~L~~L~Ls~c~~~~~L~ 294 (594)
+|++|+|++|...+.+|.. +++|+.|+|++|++.+.+|
T Consensus 514 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence 5666666666555555543 2556666666665554443
No 10
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.28 E-value=4e-12 Score=130.45 Aligned_cols=146 Identities=19% Similarity=0.219 Sum_probs=60.7
Q ss_pred ccCcCCCCccEEEEeCCCCC-ccCccccCCCCCcEEEccCCCCCccCCc-cc--ccccEEEeecCCCCcccCCCCC----
Q 041335 185 QEIACLSSLTGLHLSGNNFE-SLPASIKQLSQLSSLDLKDCKMLQSLPE-LP--LCLKSLDLMDCKILQSLPALPL---- 256 (594)
Q Consensus 185 ~~l~~L~~L~~L~l~~~~l~-~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i~--~~L~~L~L~~c~~l~~lp~~~~---- 256 (594)
+.+..+++|++|++++|.++ .+|..|+.+++|++|+|++|.....+|. +. ++|+.|++++|...+.+|..+.
T Consensus 95 ~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~ 174 (313)
T 1ogq_A 95 PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174 (313)
T ss_dssp GGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCT
T ss_pred hhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhh
Confidence 34444444444444444444 3444444444444444444432223333 22 3444444444443334443332
Q ss_pred CccEEEeeCCCCCCcCCCCC--CCccEEeeecCCCCCCchhhhc---ccccccccccccccccCcc--cccccccccccc
Q 041335 257 CLESLALTGCNMLRSIPELP--LCLKYLNLEDCNMLRSLPELSL---CLQSLNARNCNRLRSLPEI--PSCLQELDASVL 329 (594)
Q Consensus 257 ~L~~L~Ls~c~~l~~lp~~~--~~L~~L~Ls~c~~~~~L~~l~~---~L~~L~L~~c~~L~~lp~l--~~sL~~L~~~~c 329 (594)
+|++|+|++|...+.+|..+ .+|+.|+|++|.+.+.+|.... +|+.|+|++|.....+|.. +++|++|++++|
T Consensus 175 ~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N 254 (313)
T 1ogq_A 175 LFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNN 254 (313)
T ss_dssp TCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSS
T ss_pred cCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCC
Confidence 34444444443333333322 1144444444444433332111 4455555554333333332 344555555554
Q ss_pred c
Q 041335 330 E 330 (594)
Q Consensus 330 ~ 330 (594)
.
T Consensus 255 ~ 255 (313)
T 1ogq_A 255 R 255 (313)
T ss_dssp C
T ss_pred c
Confidence 4
No 11
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.26 E-value=7.4e-11 Score=132.15 Aligned_cols=30 Identities=43% Similarity=0.440 Sum_probs=15.9
Q ss_pred ccccccccccccccccCcccccccccccccc
Q 041335 299 CLQSLNARNCNRLRSLPEIPSCLQELDASVL 329 (594)
Q Consensus 299 ~L~~L~L~~c~~L~~lp~l~~sL~~L~~~~c 329 (594)
+|+.|+|++| .++.+|..+++|+.|++++|
T Consensus 222 ~L~~L~Ls~N-~L~~lp~~l~~L~~L~Ls~N 251 (622)
T 3g06_A 222 GLKELIVSGN-RLTSLPVLPSELKELMVSGN 251 (622)
T ss_dssp TCCEEECCSS-CCSCCCCCCTTCCEEECCSS
T ss_pred CCCEEEccCC-ccCcCCCCCCcCcEEECCCC
Confidence 4555555553 44455555555555555554
No 12
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.23 E-value=4.6e-12 Score=130.02 Aligned_cols=156 Identities=19% Similarity=0.243 Sum_probs=126.2
Q ss_pred eecccCcCCCCccEEEEeCCCCC-ccCccccCCCCCcEEEccCCCCCccCCc-cc---ccccEEEeecCCCCcccCCCCC
Q 041335 182 EILQEIACLSSLTGLHLSGNNFE-SLPASIKQLSQLSSLDLKDCKMLQSLPE-LP---LCLKSLDLMDCKILQSLPALPL 256 (594)
Q Consensus 182 ~~l~~l~~L~~L~~L~l~~~~l~-~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i~---~~L~~L~L~~c~~l~~lp~~~~ 256 (594)
.+++.+..+++|++|++++|.++ .+|..++.+++|++|+|++|.....+|. +. ++|+.|++++|...+.+|..+.
T Consensus 116 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~ 195 (313)
T 1ogq_A 116 AIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195 (313)
T ss_dssp ECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG
T ss_pred cCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh
Confidence 35668899999999999999998 7899999999999999999875557887 44 3899999999986668888777
Q ss_pred --CccEEEeeCCCCCCcCCCC---CCCccEEeeecCCCCCCchhhhc--ccccccccccccccccCcc---ccccccccc
Q 041335 257 --CLESLALTGCNMLRSIPEL---PLCLKYLNLEDCNMLRSLPELSL--CLQSLNARNCNRLRSLPEI---PSCLQELDA 326 (594)
Q Consensus 257 --~L~~L~Ls~c~~l~~lp~~---~~~L~~L~Ls~c~~~~~L~~l~~--~L~~L~L~~c~~L~~lp~l---~~sL~~L~~ 326 (594)
.|++|+|++|...+.+|.. +++|+.|+|++|.+.+.++.... +|+.|+|++|...+.+|.. .++|+.|++
T Consensus 196 ~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 275 (313)
T 1ogq_A 196 NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275 (313)
T ss_dssp GCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEEC
T ss_pred CCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEEC
Confidence 7999999998665555543 57899999999999877766332 8999999998776678875 567889999
Q ss_pred ccccccCCCCc
Q 041335 327 SVLEKLSKPSL 337 (594)
Q Consensus 327 ~~c~~L~~~~~ 337 (594)
++|..-+.+|.
T Consensus 276 s~N~l~~~ip~ 286 (313)
T 1ogq_A 276 SFNNLCGEIPQ 286 (313)
T ss_dssp CSSEEEEECCC
T ss_pred cCCcccccCCC
Confidence 98876555553
No 13
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.22 E-value=4.3e-11 Score=114.01 Aligned_cols=140 Identities=19% Similarity=0.138 Sum_probs=106.7
Q ss_pred cCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCccc--ccccEEEeecCCCCcccCCCCC---CccEEE
Q 041335 188 ACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPELP--LCLKSLDLMDCKILQSLPALPL---CLESLA 262 (594)
Q Consensus 188 ~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~i~--~~L~~L~L~~c~~l~~lp~~~~---~L~~L~ 262 (594)
..+++|++|++++|.++.+| .+..+++|++|++++| .+..++.+. ++|+.|++++|......|..+. +|++|+
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 55778999999999999998 7999999999999998 577776644 7999999999886555676665 899999
Q ss_pred eeCCCCCCcCCC---CCCCccEEeeecCCCCCCchhhhc--ccccccccccccccccCcc--ccccccccccccc
Q 041335 263 LTGCNMLRSIPE---LPLCLKYLNLEDCNMLRSLPELSL--CLQSLNARNCNRLRSLPEI--PSCLQELDASVLE 330 (594)
Q Consensus 263 Ls~c~~l~~lp~---~~~~L~~L~Ls~c~~~~~L~~l~~--~L~~L~L~~c~~L~~lp~l--~~sL~~L~~~~c~ 330 (594)
+++|......|. .+++|+.|+|++|...+.++.+.. +|+.|++++|. ++.++.+ +++|+.|+++++.
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG-VHDYRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC-CCCCTTGGGCSSCCEEEECBC-
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC-CcChHHhccCCCCCEEEeeCcc
Confidence 999765544443 457899999999986666665432 78888998864 5556543 5667777776653
No 14
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.19 E-value=1.4e-10 Score=129.89 Aligned_cols=130 Identities=36% Similarity=0.446 Sum_probs=54.3
Q ss_pred CCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCcccccccEEEeecCCCCcccCCCCCCccEEEeeCCCCCC
Q 041335 191 SSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPELPLCLKSLDLMDCKILQSLPALPLCLESLALTGCNMLR 270 (594)
Q Consensus 191 ~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~i~~~L~~L~L~~c~~l~~lp~~~~~L~~L~Ls~c~~l~ 270 (594)
++|++|++++|.++.+|. .+++|++|+|++|. +..+|...++|+.|++++|. +..+|..+.+|++|+|++| .+.
T Consensus 81 ~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~-l~~l~~~l~~L~~L~L~~N~-l~~lp~~l~~L~~L~Ls~N-~l~ 154 (622)
T 3g06_A 81 PELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP-LTHLPALPSGLCKLWIFGNQ-LTSLPVLPPGLQELSVSDN-QLA 154 (622)
T ss_dssp TTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC-CCCCCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS-CCS
T ss_pred CCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc-CCCCCCCCCCcCEEECCCCC-CCcCCCCCCCCCEEECcCC-cCC
Confidence 344444444444444443 34444444444432 33444433344444444433 3334443334444444443 233
Q ss_pred cCCCCCCCccEEeeecCCCCCCchhhhcccccccccccccccccCccccccccccccc
Q 041335 271 SIPELPLCLKYLNLEDCNMLRSLPELSLCLQSLNARNCNRLRSLPEIPSCLQELDASV 328 (594)
Q Consensus 271 ~lp~~~~~L~~L~Ls~c~~~~~L~~l~~~L~~L~L~~c~~L~~lp~l~~sL~~L~~~~ 328 (594)
.+|..+++|+.|++++|.+.+ +|....+|+.|++++| .++.+|..+++|+.|++++
T Consensus 155 ~l~~~~~~L~~L~L~~N~l~~-l~~~~~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~ 210 (622)
T 3g06_A 155 SLPALPSELCKLWAYNNQLTS-LPMLPSGLQELSVSDN-QLASLPTLPSELYKLWAYN 210 (622)
T ss_dssp CCCCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCS
T ss_pred CcCCccCCCCEEECCCCCCCC-CcccCCCCcEEECCCC-CCCCCCCccchhhEEECcC
Confidence 344444444444444433332 2222224444444442 2334444444444444443
No 15
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.19 E-value=1.2e-10 Score=128.92 Aligned_cols=139 Identities=32% Similarity=0.475 Sum_probs=112.3
Q ss_pred CCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCcccccccEEEeecCCCCcccCCCCCCccEEEeeCCCCCC
Q 041335 191 SSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPELPLCLKSLDLMDCKILQSLPALPLCLESLALTGCNMLR 270 (594)
Q Consensus 191 ~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~i~~~L~~L~L~~c~~l~~lp~~~~~L~~L~Ls~c~~l~ 270 (594)
++|++|++++|.++.+| +.+++|++|+|++|. +..+|.++.+|+.|++++|. +..+|....+|+.|+|++|. +.
T Consensus 80 ~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~l~~~L~~L~Ls~N~-l~~lp~~l~~L~~L~Ls~N~-l~ 153 (571)
T 3cvr_A 80 PQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPELPASLKHLDVDNNQ-LTMLPELPALLEYINADNNQ-LT 153 (571)
T ss_dssp TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC-CS
T ss_pred CCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcchhhcCCCEEECCCCc-CCCCCCcCccccEEeCCCCc-cC
Confidence 68999999999999999 568999999999875 77788866799999999987 66688843499999999965 66
Q ss_pred cCCCCCCCccEEeeecCCCCCCchhhhcccccccccccccccccCcccccc-------cccccccccccCCCCcc
Q 041335 271 SIPELPLCLKYLNLEDCNMLRSLPELSLCLQSLNARNCNRLRSLPEIPSCL-------QELDASVLEKLSKPSLD 338 (594)
Q Consensus 271 ~lp~~~~~L~~L~Ls~c~~~~~L~~l~~~L~~L~L~~c~~L~~lp~l~~sL-------~~L~~~~c~~L~~~~~~ 338 (594)
.+|..+++|+.|+|++|.+.+ +|.+..+|+.|+|++| .++.+|.++.+| +.|++++| .++.+|..
T Consensus 154 ~lp~~l~~L~~L~Ls~N~L~~-lp~l~~~L~~L~Ls~N-~L~~lp~~~~~L~~~~~~L~~L~Ls~N-~l~~lp~~ 225 (571)
T 3cvr_A 154 MLPELPTSLEVLSVRNNQLTF-LPELPESLEALDVSTN-LLESLPAVPVRNHHSEETEIFFRCREN-RITHIPEN 225 (571)
T ss_dssp CCCCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSS-CCSSCCCCC--------CCEEEECCSS-CCCCCCGG
T ss_pred cCCCcCCCcCEEECCCCCCCC-cchhhCCCCEEECcCC-CCCchhhHHHhhhcccccceEEecCCC-cceecCHH
Confidence 699888999999999998876 6654458999999995 677888866678 99999887 46666654
No 16
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.19 E-value=9.6e-11 Score=126.29 Aligned_cols=148 Identities=25% Similarity=0.288 Sum_probs=77.2
Q ss_pred cCcCCCCccEEEEeCCCCCccCcc-ccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCCCC----
Q 041335 186 EIACLSSLTGLHLSGNNFESLPAS-IKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPALPL---- 256 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~~lP~~-~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~~~---- 256 (594)
.|..+++|++|++++|.++.+|.. |+.+++|++|+|++|. +..+|. +. ++|+.|++++|..++.+|....
T Consensus 118 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~ 196 (452)
T 3zyi_A 118 AFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196 (452)
T ss_dssp TTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCT
T ss_pred hccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCC
Confidence 445555555555555555555433 5555555555555543 444443 22 4555556655555555554322
Q ss_pred CccEEEeeCCCCCCcCCCC--CCCccEEeeecCCCCCCchhhhc---ccccccccccccccccCcc---ccccccccccc
Q 041335 257 CLESLALTGCNMLRSIPEL--PLCLKYLNLEDCNMLRSLPELSL---CLQSLNARNCNRLRSLPEI---PSCLQELDASV 328 (594)
Q Consensus 257 ~L~~L~Ls~c~~l~~lp~~--~~~L~~L~Ls~c~~~~~L~~l~~---~L~~L~L~~c~~L~~lp~l---~~sL~~L~~~~ 328 (594)
+|++|+|++| .+..+|.. +++|+.|+|++|.+.+..|.... +|+.|+|++|......|.. .++|+.|++++
T Consensus 197 ~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 275 (452)
T 3zyi_A 197 NLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH 275 (452)
T ss_dssp TCCEEECTTS-CCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCCEEECCCC-cccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCC
Confidence 5666666554 33444432 35566666666666553332211 6677777765432222322 45677777776
Q ss_pred ccccCCCC
Q 041335 329 LEKLSKPS 336 (594)
Q Consensus 329 c~~L~~~~ 336 (594)
+ .++.++
T Consensus 276 N-~l~~~~ 282 (452)
T 3zyi_A 276 N-NLSSLP 282 (452)
T ss_dssp S-CCSCCC
T ss_pred C-cCCccC
Confidence 6 444444
No 17
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.17 E-value=3.1e-11 Score=136.04 Aligned_cols=152 Identities=17% Similarity=0.203 Sum_probs=123.0
Q ss_pred ecccCcCCCCccEEEEeCCCCCc------------------cCcccc--CCCCCcEEEccCCCCCccCCc-cc--ccccE
Q 041335 183 ILQEIACLSSLTGLHLSGNNFES------------------LPASIK--QLSQLSSLDLKDCKMLQSLPE-LP--LCLKS 239 (594)
Q Consensus 183 ~l~~l~~L~~L~~L~l~~~~l~~------------------lP~~~~--~l~~L~~L~Ls~c~~l~~lP~-i~--~~L~~ 239 (594)
+|+.++.+++|++|++++|.++. +|..++ ++++|++|+|++|...+.+|. +. ++|+.
T Consensus 198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 277 (636)
T 4eco_A 198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL 277 (636)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence 78899999999999999999998 999999 999999999999998889998 55 69999
Q ss_pred EEeecCC-CCc-ccCCCC---------CCccEEEeeCCCCCCcCCC-----CCCCccEEeeecCCCCCCchhhh--cccc
Q 041335 240 LDLMDCK-ILQ-SLPALP---------LCLESLALTGCNMLRSIPE-----LPLCLKYLNLEDCNMLRSLPELS--LCLQ 301 (594)
Q Consensus 240 L~L~~c~-~l~-~lp~~~---------~~L~~L~Ls~c~~l~~lp~-----~~~~L~~L~Ls~c~~~~~L~~l~--~~L~ 301 (594)
|++++|. ... .+|..+ .+|++|+|++|... .+|. .+++|+.|+|++|.+.+.+|.+. .+|+
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~ 356 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLA 356 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEES
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCC
Confidence 9999998 444 688654 37999999997654 8887 35789999999999988887322 1788
Q ss_pred cccccccccccccCcc---ccc-ccccccccccccCCCCc
Q 041335 302 SLNARNCNRLRSLPEI---PSC-LQELDASVLEKLSKPSL 337 (594)
Q Consensus 302 ~L~L~~c~~L~~lp~l---~~s-L~~L~~~~c~~L~~~~~ 337 (594)
.|+|++|. ++.+|.. .++ |+.|++++|. ++.+|.
T Consensus 357 ~L~L~~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~ 394 (636)
T 4eco_A 357 SLNLAYNQ-ITEIPANFCGFTEQVENLSFAHNK-LKYIPN 394 (636)
T ss_dssp EEECCSSE-EEECCTTSEEECTTCCEEECCSSC-CSSCCS
T ss_pred EEECCCCc-cccccHhhhhhcccCcEEEccCCc-Ccccch
Confidence 88888864 4577764 445 8888888775 445553
No 18
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.16 E-value=1.7e-10 Score=115.76 Aligned_cols=143 Identities=29% Similarity=0.324 Sum_probs=98.3
Q ss_pred ecccCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCC-CC-
Q 041335 183 ILQEIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPAL-PL- 256 (594)
Q Consensus 183 ~l~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~-~~- 256 (594)
.++++..+++|++|++++|.++.++ .++.+++|++|+|++|. +..+|. +. ++|+.|++++|. +..+|.. +.
T Consensus 55 ~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~ 131 (272)
T 3rfs_A 55 SVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQ-LQSLPDGVFDK 131 (272)
T ss_dssp CCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTT
T ss_pred cccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCCc-CCccCHHHhcc
Confidence 3446777888888888888888764 77888888888888775 566655 33 688888888877 4555543 33
Q ss_pred --CccEEEeeCCCCCCcCCC----CCCCccEEeeecCCCCCCchhhh---cccccccccccccccccCc-c---cccccc
Q 041335 257 --CLESLALTGCNMLRSIPE----LPLCLKYLNLEDCNMLRSLPELS---LCLQSLNARNCNRLRSLPE-I---PSCLQE 323 (594)
Q Consensus 257 --~L~~L~Ls~c~~l~~lp~----~~~~L~~L~Ls~c~~~~~L~~l~---~~L~~L~L~~c~~L~~lp~-l---~~sL~~ 323 (594)
+|++|+|++| .+..+|. .+++|+.|+|++|.+.+..+... .+|+.|+|++|+ ++.+|. . .++|+.
T Consensus 132 l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~ 209 (272)
T 3rfs_A 132 LTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQY 209 (272)
T ss_dssp CTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCE
T ss_pred CCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc-CCccCHHHHhCCcCCCE
Confidence 7888888886 4455553 24778888888888775443321 278888888864 444443 2 456777
Q ss_pred ccccccc
Q 041335 324 LDASVLE 330 (594)
Q Consensus 324 L~~~~c~ 330 (594)
|++++++
T Consensus 210 L~l~~N~ 216 (272)
T 3rfs_A 210 IWLHDNP 216 (272)
T ss_dssp EECCSSC
T ss_pred EEccCCC
Confidence 7776653
No 19
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.15 E-value=1.7e-10 Score=123.84 Aligned_cols=147 Identities=26% Similarity=0.344 Sum_probs=77.1
Q ss_pred cCcCCCCccEEEEeCCCCCccCc-cccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCCCC----
Q 041335 186 EIACLSSLTGLHLSGNNFESLPA-SIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPALPL---- 256 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~~lP~-~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~~~---- 256 (594)
.|..+++|++|++++|.++.+|. .|..+++|++|+|++|. +..+|. +. ++|+.|++++|..+..+|....
T Consensus 107 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~ 185 (440)
T 3zyj_A 107 AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185 (440)
T ss_dssp GGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS
T ss_pred hccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc
Confidence 45555555555555555555544 35555556666665543 444443 22 4566666666555555554322
Q ss_pred CccEEEeeCCCCCCcCCCC--CCCccEEeeecCCCCCCchhhh---cccccccccccccccccCc-c---cccccccccc
Q 041335 257 CLESLALTGCNMLRSIPEL--PLCLKYLNLEDCNMLRSLPELS---LCLQSLNARNCNRLRSLPE-I---PSCLQELDAS 327 (594)
Q Consensus 257 ~L~~L~Ls~c~~l~~lp~~--~~~L~~L~Ls~c~~~~~L~~l~---~~L~~L~L~~c~~L~~lp~-l---~~sL~~L~~~ 327 (594)
+|++|+|++| .+..+|.. +++|+.|+|++|.+.+..+... .+|+.|+|++|. ++.++. . +++|+.|+++
T Consensus 186 ~L~~L~L~~n-~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~ 263 (440)
T 3zyj_A 186 NLRYLNLAMC-NLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLA 263 (440)
T ss_dssp SCCEEECTTS-CCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECT
T ss_pred ccCeecCCCC-cCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECC
Confidence 5666666654 34455532 3556666666665554322211 156666666643 333332 1 4567777776
Q ss_pred cccccCCCC
Q 041335 328 VLEKLSKPS 336 (594)
Q Consensus 328 ~c~~L~~~~ 336 (594)
++ .++.++
T Consensus 264 ~N-~l~~~~ 271 (440)
T 3zyj_A 264 HN-NLTLLP 271 (440)
T ss_dssp TS-CCCCCC
T ss_pred CC-CCCccC
Confidence 65 344444
No 20
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.14 E-value=1.7e-10 Score=124.38 Aligned_cols=144 Identities=27% Similarity=0.342 Sum_probs=112.5
Q ss_pred cccCcCCCCccEEEEeCCCCCccC-ccccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCCCC--
Q 041335 184 LQEIACLSSLTGLHLSGNNFESLP-ASIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPALPL-- 256 (594)
Q Consensus 184 l~~l~~L~~L~~L~l~~~~l~~lP-~~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~~~-- 256 (594)
++.|..+++|++|++++|.++.++ ..|.++++|++|+|++|. +..+|. +. ++|+.|+|++|. +..+|....
T Consensus 92 ~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~ 169 (452)
T 3zyi_A 92 ADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWLRNNP-IESIPSYAFNR 169 (452)
T ss_dssp TTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEECCSCC-CCEECTTTTTT
T ss_pred HHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEECCCCC-cceeCHhHHhc
Confidence 457888999999999999998775 678999999999999876 777776 33 689999999987 667776432
Q ss_pred --CccEEEeeCCCCCCcCCCC----CCCccEEeeecCCCCCCchhhhc--ccccccccccccccccCcc---cccccccc
Q 041335 257 --CLESLALTGCNMLRSIPEL----PLCLKYLNLEDCNMLRSLPELSL--CLQSLNARNCNRLRSLPEI---PSCLQELD 325 (594)
Q Consensus 257 --~L~~L~Ls~c~~l~~lp~~----~~~L~~L~Ls~c~~~~~L~~l~~--~L~~L~L~~c~~L~~lp~l---~~sL~~L~ 325 (594)
+|++|+|++|+.++.+|.. +++|+.|+|++|++.+ +|.+.. +|+.|+|++|......|.. .++|+.|+
T Consensus 170 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 248 (452)
T 3zyi_A 170 VPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLW 248 (452)
T ss_dssp CTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEE
T ss_pred CCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cccccccccccEEECcCCcCcccCcccccCccCCCEEE
Confidence 8999999999999988863 5789999999998775 343322 8999999996544433443 56788888
Q ss_pred ccccc
Q 041335 326 ASVLE 330 (594)
Q Consensus 326 ~~~c~ 330 (594)
+++|.
T Consensus 249 L~~n~ 253 (452)
T 3zyi_A 249 VMNSQ 253 (452)
T ss_dssp CTTSC
T ss_pred eCCCc
Confidence 87764
No 21
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.14 E-value=6.3e-11 Score=137.32 Aligned_cols=150 Identities=20% Similarity=0.223 Sum_probs=115.9
Q ss_pred ecccCcCCCCccEEEEeCCCCCc------------------cCcccc--CCCCCcEEEccCCCCCccCCc-cc--ccccE
Q 041335 183 ILQEIACLSSLTGLHLSGNNFES------------------LPASIK--QLSQLSSLDLKDCKMLQSLPE-LP--LCLKS 239 (594)
Q Consensus 183 ~l~~l~~L~~L~~L~l~~~~l~~------------------lP~~~~--~l~~L~~L~Ls~c~~l~~lP~-i~--~~L~~ 239 (594)
+|..++.|++|++|++++|.++. +|..++ ++++|++|+|++|...+.+|. +. ++|+.
T Consensus 440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~ 519 (876)
T 4ecn_A 440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS 519 (876)
T ss_dssp ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence 78889999999999999999998 999988 999999999999988888887 54 68999
Q ss_pred EEeecCC-CCc-ccCCCCC----------CccEEEeeCCCCCCcCCC-----CCCCccEEeeecCCCCCCchhhh--ccc
Q 041335 240 LDLMDCK-ILQ-SLPALPL----------CLESLALTGCNMLRSIPE-----LPLCLKYLNLEDCNMLRSLPELS--LCL 300 (594)
Q Consensus 240 L~L~~c~-~l~-~lp~~~~----------~L~~L~Ls~c~~l~~lp~-----~~~~L~~L~Ls~c~~~~~L~~l~--~~L 300 (594)
|+|++|. .-. .+|..++ +|++|+|++|... .+|. .+++|+.|+|++|.+. .+|.+. .+|
T Consensus 520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L 597 (876)
T 4ecn_A 520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKL 597 (876)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEE
T ss_pred EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcc
Confidence 9999987 333 4665433 6889999986654 8887 3578888899888877 676332 178
Q ss_pred ccccccccccccccCcc---ccc-ccccccccccccCCCC
Q 041335 301 QSLNARNCNRLRSLPEI---PSC-LQELDASVLEKLSKPS 336 (594)
Q Consensus 301 ~~L~L~~c~~L~~lp~l---~~s-L~~L~~~~c~~L~~~~ 336 (594)
+.|+|++|. +..+|.. .++ |+.|++++|. ++.+|
T Consensus 598 ~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp 635 (876)
T 4ecn_A 598 TDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNK-LKYIP 635 (876)
T ss_dssp SEEECCSSC-CSCCCTTSCEECTTCCEEECCSSC-CCSCC
T ss_pred eEEECcCCc-cccchHHHhhccccCCEEECcCCC-CCcCc
Confidence 888888855 4477754 345 7888887775 44555
No 22
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.13 E-value=2.2e-10 Score=123.05 Aligned_cols=143 Identities=29% Similarity=0.390 Sum_probs=111.2
Q ss_pred cccCcCCCCccEEEEeCCCCCccC-ccccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCCC-C-
Q 041335 184 LQEIACLSSLTGLHLSGNNFESLP-ASIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPALP-L- 256 (594)
Q Consensus 184 l~~l~~L~~L~~L~l~~~~l~~lP-~~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~~-~- 256 (594)
+..|..+++|++|++++|.++.++ ..|.++++|++|+|++|. +..+|. +. ++|+.|+|++|. +..+|... .
T Consensus 81 ~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~ 158 (440)
T 3zyj_A 81 VNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNR 158 (440)
T ss_dssp TTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTT
T ss_pred HHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhh
Confidence 357888999999999999999775 578999999999999875 777775 43 689999999987 66666533 2
Q ss_pred --CccEEEeeCCCCCCcCCCC----CCCccEEeeecCCCCCCchhhhc--cccccccccccccccc-Ccc---ccccccc
Q 041335 257 --CLESLALTGCNMLRSIPEL----PLCLKYLNLEDCNMLRSLPELSL--CLQSLNARNCNRLRSL-PEI---PSCLQEL 324 (594)
Q Consensus 257 --~L~~L~Ls~c~~l~~lp~~----~~~L~~L~Ls~c~~~~~L~~l~~--~L~~L~L~~c~~L~~l-p~l---~~sL~~L 324 (594)
+|++|+|++|+.++.+|.. +++|+.|+|++|.+. .+|.+.. +|+.|+|++|. ++.+ |.. .++|+.|
T Consensus 159 l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 236 (440)
T 3zyj_A 159 IPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKL 236 (440)
T ss_dssp CTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCCCTTCSSCCEEECTTSC-CCEECTTTTTTCTTCCEE
T ss_pred CcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccccCCCcccCEEECCCCc-cCccChhhhccCccCCEE
Confidence 8999999999999888863 578999999999776 4454322 89999999974 4554 433 5678888
Q ss_pred cccccc
Q 041335 325 DASVLE 330 (594)
Q Consensus 325 ~~~~c~ 330 (594)
+++++.
T Consensus 237 ~L~~n~ 242 (440)
T 3zyj_A 237 WMIQSQ 242 (440)
T ss_dssp ECTTCC
T ss_pred ECCCCc
Confidence 887764
No 23
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.13 E-value=4.1e-10 Score=112.65 Aligned_cols=141 Identities=30% Similarity=0.366 Sum_probs=87.6
Q ss_pred CCccEEEEeCCCCCccCc-cccCCCCCcEEEccCCCCCccCCc-c-c--ccccEEEeecCCCCcccCCCC-C---CccEE
Q 041335 191 SSLTGLHLSGNNFESLPA-SIKQLSQLSSLDLKDCKMLQSLPE-L-P--LCLKSLDLMDCKILQSLPALP-L---CLESL 261 (594)
Q Consensus 191 ~~L~~L~l~~~~l~~lP~-~~~~l~~L~~L~Ls~c~~l~~lP~-i-~--~~L~~L~L~~c~~l~~lp~~~-~---~L~~L 261 (594)
++|+.|++++|.++.+|. .|+.+++|++|+|++|. +..+|. + . ++|+.|++++|. +..+|... . +|++|
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAEL 114 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEE
Confidence 367777777777777664 57777777777777654 556665 2 2 577777777766 55555433 2 67777
Q ss_pred EeeCCCCCCcCCC----CCCCccEEeeecCCCCCCchhhh---cccccccccccccccccCcc----ccccccccccccc
Q 041335 262 ALTGCNMLRSIPE----LPLCLKYLNLEDCNMLRSLPELS---LCLQSLNARNCNRLRSLPEI----PSCLQELDASVLE 330 (594)
Q Consensus 262 ~Ls~c~~l~~lp~----~~~~L~~L~Ls~c~~~~~L~~l~---~~L~~L~L~~c~~L~~lp~l----~~sL~~L~~~~c~ 330 (594)
+|++|. +..+|. .+++|+.|+|++|.+.+-.+... .+|+.|+|++| .++.+|.. .++|+.|++++|
T Consensus 115 ~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N- 191 (270)
T 2o6q_A 115 RLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNN- 191 (270)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS-
T ss_pred ECCCCc-cCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCC-
Confidence 777754 333432 24677777777776654322211 26777777775 34555542 466777777776
Q ss_pred ccCCCC
Q 041335 331 KLSKPS 336 (594)
Q Consensus 331 ~L~~~~ 336 (594)
.++.++
T Consensus 192 ~l~~~~ 197 (270)
T 2o6q_A 192 QLKRVP 197 (270)
T ss_dssp CCSCCC
T ss_pred cCCcCC
Confidence 344444
No 24
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.13 E-value=4.5e-11 Score=134.66 Aligned_cols=130 Identities=13% Similarity=0.168 Sum_probs=106.7
Q ss_pred ccCccccCCCCCcEEEccCCCCCcc------------------CCc-cc----ccccEEEeecCCCCcccCCCCC---Cc
Q 041335 205 SLPASIKQLSQLSSLDLKDCKMLQS------------------LPE-LP----LCLKSLDLMDCKILQSLPALPL---CL 258 (594)
Q Consensus 205 ~lP~~~~~l~~L~~L~Ls~c~~l~~------------------lP~-i~----~~L~~L~L~~c~~l~~lp~~~~---~L 258 (594)
.+|..++++++|++|+|++|. +.. +|. +. ++|+.|++++|...+.+|..++ +|
T Consensus 197 ~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L 275 (636)
T 4eco_A 197 FVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275 (636)
T ss_dssp EECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSC
T ss_pred cCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCC
Confidence 478899999999999999987 555 888 55 5999999999999999998887 99
Q ss_pred cEEEeeCCCCCC--cCCCCC---------CCccEEeeecCCCCCCchh--hhc---ccccccccccccccccCcc--ccc
Q 041335 259 ESLALTGCNMLR--SIPELP---------LCLKYLNLEDCNMLRSLPE--LSL---CLQSLNARNCNRLRSLPEI--PSC 320 (594)
Q Consensus 259 ~~L~Ls~c~~l~--~lp~~~---------~~L~~L~Ls~c~~~~~L~~--l~~---~L~~L~L~~c~~L~~lp~l--~~s 320 (594)
++|+|++|..+. .+|..+ ++|+.|+|++|.+. .+|. ... +|+.|++++|...+.+|.+ +++
T Consensus 276 ~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~ 354 (636)
T 4eco_A 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIK 354 (636)
T ss_dssp CEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEE
T ss_pred CEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCC
Confidence 999999988444 588543 79999999999998 7776 322 7999999997766689854 678
Q ss_pred ccccccccccccCCCCc
Q 041335 321 LQELDASVLEKLSKPSL 337 (594)
Q Consensus 321 L~~L~~~~c~~L~~~~~ 337 (594)
|+.|++++|. ++.++.
T Consensus 355 L~~L~L~~N~-l~~lp~ 370 (636)
T 4eco_A 355 LASLNLAYNQ-ITEIPA 370 (636)
T ss_dssp ESEEECCSSE-EEECCT
T ss_pred CCEEECCCCc-cccccH
Confidence 9999998875 335543
No 25
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.12 E-value=6.4e-10 Score=111.26 Aligned_cols=141 Identities=31% Similarity=0.316 Sum_probs=108.8
Q ss_pred cCcCCCCccEEEEeCCCCCccCcc-ccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCC-CC---
Q 041335 186 EIACLSSLTGLHLSGNNFESLPAS-IKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPAL-PL--- 256 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~~lP~~-~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~-~~--- 256 (594)
.+..+++|++|++++|.++.+|.. |..+++|++|+|++|. +..+|. +. ++|+.|++++|. +..+|.. +.
T Consensus 56 ~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~ 133 (270)
T 2o6q_A 56 AFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLT 133 (270)
T ss_dssp SSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred HhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCc-cCeeCHHHhCcCc
Confidence 688899999999999999999875 5889999999999876 777775 33 699999999987 5555543 33
Q ss_pred CccEEEeeCCCCCCcCCCC----CCCccEEeeecCCCCCCchhhh---cccccccccccccccccCcc----cccccccc
Q 041335 257 CLESLALTGCNMLRSIPEL----PLCLKYLNLEDCNMLRSLPELS---LCLQSLNARNCNRLRSLPEI----PSCLQELD 325 (594)
Q Consensus 257 ~L~~L~Ls~c~~l~~lp~~----~~~L~~L~Ls~c~~~~~L~~l~---~~L~~L~L~~c~~L~~lp~l----~~sL~~L~ 325 (594)
+|++|+|++| .+..+|.. +++|+.|+|++|.+.+-.+... .+|+.|+|++| .++.+|.. .++|+.|+
T Consensus 134 ~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~ 211 (270)
T 2o6q_A 134 KLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQ 211 (270)
T ss_dssp TCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEE
T ss_pred CCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEE
Confidence 8999999996 45666643 4889999999998876433211 28999999996 56677653 45677777
Q ss_pred ccccc
Q 041335 326 ASVLE 330 (594)
Q Consensus 326 ~~~c~ 330 (594)
+++++
T Consensus 212 l~~N~ 216 (270)
T 2o6q_A 212 LQENP 216 (270)
T ss_dssp CCSSC
T ss_pred ecCCC
Confidence 76653
No 26
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.12 E-value=2.4e-10 Score=126.61 Aligned_cols=137 Identities=36% Similarity=0.575 Sum_probs=116.6
Q ss_pred CccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCcccccccEEEeecCCCCcccCCCCC-CccEEEeeCCCCCC
Q 041335 192 SLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPELPLCLKSLDLMDCKILQSLPALPL-CLESLALTGCNMLR 270 (594)
Q Consensus 192 ~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~i~~~L~~L~L~~c~~l~~lp~~~~-~L~~L~Ls~c~~l~ 270 (594)
+|++|++++|.++.+|..+ +++|++|+|++|. ++.+|.+.++|+.|++++|. +..+|. +. +|++|+|++|. +.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~-l~~ip~~l~~L~~L~Ls~N~-l~~ip~-l~~~L~~L~Ls~N~-l~ 133 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNA-LISLPELPASLEYLDACDNR-LSTLPE-LPASLKHLDVDNNQ-LT 133 (571)
T ss_dssp TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSC-CSCCCCCCTTCCEEECCSSC-CSCCCC-CCTTCCEEECCSSC-CS
T ss_pred CccEEEeCCCCCCccCHhH--cCCCCEEECcCCC-CcccccccCCCCEEEccCCC-CCCcch-hhcCCCEEECCCCc-CC
Confidence 8999999999999999877 4899999999875 77899766899999999986 666998 66 99999999964 56
Q ss_pred cCCCCCCCccEEeeecCCCCCCchhhhcccccccccccccccccCcccccccccccccccccCCCCc
Q 041335 271 SIPELPLCLKYLNLEDCNMLRSLPELSLCLQSLNARNCNRLRSLPEIPSCLQELDASVLEKLSKPSL 337 (594)
Q Consensus 271 ~lp~~~~~L~~L~Ls~c~~~~~L~~l~~~L~~L~L~~c~~L~~lp~l~~sL~~L~~~~c~~L~~~~~ 337 (594)
.+|..+++|+.|+|++|.+.+ +|....+|+.|+|++| .++.+|.+.++|+.|++++| .++.+|.
T Consensus 134 ~lp~~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N-~L~~lp~l~~~L~~L~Ls~N-~L~~lp~ 197 (571)
T 3cvr_A 134 MLPELPALLEYINADNNQLTM-LPELPTSLEVLSVRNN-QLTFLPELPESLEALDVSTN-LLESLPA 197 (571)
T ss_dssp CCCCCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS-CCSSCCC
T ss_pred CCCCcCccccEEeCCCCccCc-CCCcCCCcCEEECCCC-CCCCcchhhCCCCEEECcCC-CCCchhh
Confidence 688888999999999999876 6664458999999996 56778887789999999987 4666654
No 27
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.12 E-value=1.1e-10 Score=116.63 Aligned_cols=139 Identities=19% Similarity=0.268 Sum_probs=106.6
Q ss_pred cCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCccc--ccccEEEeecCCCCcccCCCCC-CccEEE
Q 041335 186 EIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPELP--LCLKSLDLMDCKILQSLPALPL-CLESLA 262 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~i~--~~L~~L~L~~c~~l~~lp~~~~-~L~~L~ 262 (594)
.+..+++|++|++++|.++.+| .++.+++|++|+|++|. +..+|.+. ++|+.|++++|. +..+|.... +|++|+
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L~L~~N~-l~~l~~~~~~~L~~L~ 112 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSPLKDLTKLEELSVNRNR-LKNLNGIPSACLSRLF 112 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSSC-CSCCTTCCCSSCCEEE
T ss_pred chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChhhccCCCCCEEECCCCc-cCCcCccccCcccEEE
Confidence 5677889999999999999998 78899999999999875 77777643 689999999986 666776554 899999
Q ss_pred eeCCCCCCcCCC--CCCCccEEeeecCCCCCCchhhh--cccccccccccccccccCcc--ccccccccccccc
Q 041335 263 LTGCNMLRSIPE--LPLCLKYLNLEDCNMLRSLPELS--LCLQSLNARNCNRLRSLPEI--PSCLQELDASVLE 330 (594)
Q Consensus 263 Ls~c~~l~~lp~--~~~~L~~L~Ls~c~~~~~L~~l~--~~L~~L~L~~c~~L~~lp~l--~~sL~~L~~~~c~ 330 (594)
|++| .+..+|. .+++|+.|+|++|.+.+ ++.+. .+|+.|+|++| .++.++.+ .++|+.|++++++
T Consensus 113 L~~N-~l~~~~~l~~l~~L~~L~Ls~N~i~~-~~~l~~l~~L~~L~L~~N-~i~~~~~l~~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 113 LDNN-ELRDTDSLIHLKNLEILSIRNNKLKS-IVMLGFLSKLEVLDLHGN-EITNTGGLTRLKKVNWIDLTGQK 183 (263)
T ss_dssp CCSS-CCSBSGGGTTCTTCCEEECTTSCCCB-CGGGGGCTTCCEEECTTS-CCCBCTTSTTCCCCCEEEEEEEE
T ss_pred ccCC-ccCCChhhcCcccccEEECCCCcCCC-ChHHccCCCCCEEECCCC-cCcchHHhccCCCCCEEeCCCCc
Confidence 9996 4555663 35789999999998765 34322 27889999885 44555443 5678888887765
No 28
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.12 E-value=2.2e-10 Score=112.31 Aligned_cols=145 Identities=17% Similarity=0.194 Sum_probs=113.2
Q ss_pred CccEEEEeCCCCCccCc-cccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCCCC----CccEEE
Q 041335 192 SLTGLHLSGNNFESLPA-SIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPALPL----CLESLA 262 (594)
Q Consensus 192 ~L~~L~l~~~~l~~lP~-~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~~~----~L~~L~ 262 (594)
+|++|++++|.++.+|+ .|+.+++|++|++++|..++.+|. +. ++|+.|++++|..+..+|.... +|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 89999999999999887 799999999999999876888876 43 6999999999556888886432 899999
Q ss_pred eeCCCCCCcCCC--CCCCcc---EEeeecCCCCCCchhh-h---cccc-cccccccccccccCcc---cccccccccccc
Q 041335 263 LTGCNMLRSIPE--LPLCLK---YLNLEDCNMLRSLPEL-S---LCLQ-SLNARNCNRLRSLPEI---PSCLQELDASVL 329 (594)
Q Consensus 263 Ls~c~~l~~lp~--~~~~L~---~L~Ls~c~~~~~L~~l-~---~~L~-~L~L~~c~~L~~lp~l---~~sL~~L~~~~c 329 (594)
+++|. +..+|. .+++|+ .|++++|...+.++.. . .+|+ .|++++| .++.+|.. .++|+.|++++|
T Consensus 112 l~~n~-l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n 189 (239)
T 2xwt_C 112 IFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKN 189 (239)
T ss_dssp EEEEC-CCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTC
T ss_pred CCCCC-CccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCC
Confidence 99965 556885 346677 9999999333334431 1 2788 9999985 46688764 368999999999
Q ss_pred cccCCCCcc
Q 041335 330 EKLSKPSLD 338 (594)
Q Consensus 330 ~~L~~~~~~ 338 (594)
..++.++..
T Consensus 190 ~~l~~i~~~ 198 (239)
T 2xwt_C 190 KYLTVIDKD 198 (239)
T ss_dssp TTCCEECTT
T ss_pred CCcccCCHH
Confidence 777766543
No 29
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.12 E-value=2.9e-10 Score=114.50 Aligned_cols=150 Identities=23% Similarity=0.198 Sum_probs=104.1
Q ss_pred ccCcCCCCccEEEEeCCCCCcc-CccccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCCCC---
Q 041335 185 QEIACLSSLTGLHLSGNNFESL-PASIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPALPL--- 256 (594)
Q Consensus 185 ~~l~~L~~L~~L~l~~~~l~~l-P~~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~~~--- 256 (594)
..+..+++|++|++++|.++.+ |..|+.+++|++|+|++|..++.++. +. ++|+.|++++|......|..+.
T Consensus 50 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 129 (285)
T 1ozn_A 50 ASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA 129 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred HHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCc
Confidence 3577888899999988888876 67788888999999988876777743 43 6888999988874443344444
Q ss_pred CccEEEeeCCCCCCcCCC----CCCCccEEeeecCCCCCCchh-h--hcccccccccccccccccCcc---ccccccccc
Q 041335 257 CLESLALTGCNMLRSIPE----LPLCLKYLNLEDCNMLRSLPE-L--SLCLQSLNARNCNRLRSLPEI---PSCLQELDA 326 (594)
Q Consensus 257 ~L~~L~Ls~c~~l~~lp~----~~~~L~~L~Ls~c~~~~~L~~-l--~~~L~~L~L~~c~~L~~lp~l---~~sL~~L~~ 326 (594)
+|++|+|++|. +..+|. .+++|+.|+|++|.+.+-.+. + ..+|+.|+|++|......|.. .++|+.|++
T Consensus 130 ~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 208 (285)
T 1ozn_A 130 ALQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208 (285)
T ss_dssp TCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeC
Confidence 88889998864 444553 247888999988877642222 1 127888888886544333543 467888888
Q ss_pred ccccccCCCC
Q 041335 327 SVLEKLSKPS 336 (594)
Q Consensus 327 ~~c~~L~~~~ 336 (594)
+++. ++.++
T Consensus 209 ~~n~-l~~~~ 217 (285)
T 1ozn_A 209 FANN-LSALP 217 (285)
T ss_dssp CSSC-CSCCC
T ss_pred CCCc-CCcCC
Confidence 8773 34333
No 30
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.10 E-value=2e-10 Score=116.50 Aligned_cols=140 Identities=29% Similarity=0.330 Sum_probs=82.0
Q ss_pred ccCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCccc--ccccEEEeecCCCCcccCCCCC--CccE
Q 041335 185 QEIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPELP--LCLKSLDLMDCKILQSLPALPL--CLES 260 (594)
Q Consensus 185 ~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~i~--~~L~~L~L~~c~~l~~lp~~~~--~L~~ 260 (594)
+++..+++|++|++++|.++.+|. ++.+++|++|+|++|. +..+|.+. ++|+.|++++|. +..++.... +|++
T Consensus 62 ~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~-i~~~~~l~~l~~L~~ 138 (291)
T 1h6t_A 62 QGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHNG-ISDINGLVHLPQLES 138 (291)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTTSC-CCCCGGGGGCTTCCE
T ss_pred hhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChhhccCCCCCEEECCCCc-CCCChhhcCCCCCCE
Confidence 356666677777777777776665 6677777777777654 55555533 567777777665 444432211 6777
Q ss_pred EEeeCCCCCCcCCC--CCCCccEEeeecCCCCCCchhhh--cccccccccccccccccCcc--ccccccccccccc
Q 041335 261 LALTGCNMLRSIPE--LPLCLKYLNLEDCNMLRSLPELS--LCLQSLNARNCNRLRSLPEI--PSCLQELDASVLE 330 (594)
Q Consensus 261 L~Ls~c~~l~~lp~--~~~~L~~L~Ls~c~~~~~L~~l~--~~L~~L~L~~c~~L~~lp~l--~~sL~~L~~~~c~ 330 (594)
|++++|. +..++. .+++|+.|+|++|.+.+..+ +. .+|+.|+|++| .++.+|.+ .++|+.|++++++
T Consensus 139 L~l~~n~-l~~~~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N-~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 139 LYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp EECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEEEEEEE
T ss_pred EEccCCc-CCcchhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCC-cCCCChhhccCCCCCEEECcCCc
Confidence 7777653 333432 24667777777776655333 21 16666777664 44555543 4556666666553
No 31
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.09 E-value=3.9e-10 Score=121.78 Aligned_cols=138 Identities=29% Similarity=0.462 Sum_probs=107.7
Q ss_pred CCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCcccccccEEEeecCCCCcccCCCCC---CccEEEeeCCC
Q 041335 191 SSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPELPLCLKSLDLMDCKILQSLPALPL---CLESLALTGCN 267 (594)
Q Consensus 191 ~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~i~~~L~~L~L~~c~~l~~lp~~~~---~L~~L~Ls~c~ 267 (594)
++|++|++++|.++.+| .++++++|++|++++|. +..+|....+|+.|++++|. +..+|. +. +|++|++++|.
T Consensus 131 ~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~-l~~lp~~~~~L~~L~L~~n~-l~~l~~-~~~l~~L~~L~l~~N~ 206 (454)
T 1jl5_A 131 PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNS-LKKLPDLPPSLEFIAAGNNQ-LEELPE-LQNLPFLTAIYADNNS 206 (454)
T ss_dssp TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC-CSSCCC-CTTCTTCCEEECCSSC
T ss_pred CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCc-CcccCCCcccccEEECcCCc-CCcCcc-ccCCCCCCEEECCCCc
Confidence 48999999999999988 59999999999999875 77788866789999999986 566774 44 88999998864
Q ss_pred CCCcCCCCCCCccEEeeecCCCCCCchhhhc--ccccccccccccccccCcccccccccccccccccCCCC
Q 041335 268 MLRSIPELPLCLKYLNLEDCNMLRSLPELSL--CLQSLNARNCNRLRSLPEIPSCLQELDASVLEKLSKPS 336 (594)
Q Consensus 268 ~l~~lp~~~~~L~~L~Ls~c~~~~~L~~l~~--~L~~L~L~~c~~L~~lp~l~~sL~~L~~~~c~~L~~~~ 336 (594)
+..+|..+++|+.|++++|.+. .+|.+.. +|+.|++++| .++.+|..+++|+.|++++|. ++.++
T Consensus 207 -l~~l~~~~~~L~~L~l~~n~l~-~lp~~~~l~~L~~L~l~~N-~l~~l~~~~~~L~~L~l~~N~-l~~l~ 273 (454)
T 1jl5_A 207 -LKKLPDLPLSLESIVAGNNILE-ELPELQNLPFLTTIYADNN-LLKTLPDLPPSLEALNVRDNY-LTDLP 273 (454)
T ss_dssp -CSSCCCCCTTCCEEECCSSCCS-SCCCCTTCTTCCEEECCSS-CCSSCCSCCTTCCEEECCSSC-CSCCC
T ss_pred -CCcCCCCcCcccEEECcCCcCC-cccccCCCCCCCEEECCCC-cCCcccccccccCEEECCCCc-ccccC
Confidence 5568888888999999988776 5664322 7888888884 566788878888888888774 44444
No 32
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.09 E-value=2.5e-10 Score=125.66 Aligned_cols=148 Identities=24% Similarity=0.250 Sum_probs=114.5
Q ss_pred ecccC-cCCCCccEEEEeCCCCCc-cC---ccccCCCCCcEEEccCCCCCccCCc----cc--ccccEEEeecCCCCccc
Q 041335 183 ILQEI-ACLSSLTGLHLSGNNFES-LP---ASIKQLSQLSSLDLKDCKMLQSLPE----LP--LCLKSLDLMDCKILQSL 251 (594)
Q Consensus 183 ~l~~l-~~L~~L~~L~l~~~~l~~-lP---~~~~~l~~L~~L~Ls~c~~l~~lP~----i~--~~L~~L~L~~c~~l~~l 251 (594)
++..+ ..+++|++|++++|.++. +| ..++.+++|++|+|++|. +..+|. +. ++|+.|++++|. +..+
T Consensus 325 ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l 402 (549)
T 2z81_A 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRNT-FHPM 402 (549)
T ss_dssp CCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTCC-CCCC
T ss_pred CCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCCC-CccC
Confidence 34444 468999999999999884 33 347889999999999875 666652 32 689999999986 6789
Q ss_pred CCCCC---CccEEEeeCCCCCCcCCCC-CCCccEEeeecCCCCCCchhhhcccccccccccccccccCcc--cccccccc
Q 041335 252 PALPL---CLESLALTGCNMLRSIPEL-PLCLKYLNLEDCNMLRSLPELSLCLQSLNARNCNRLRSLPEI--PSCLQELD 325 (594)
Q Consensus 252 p~~~~---~L~~L~Ls~c~~l~~lp~~-~~~L~~L~Ls~c~~~~~L~~l~~~L~~L~L~~c~~L~~lp~l--~~sL~~L~ 325 (594)
|..+. +|++|++++|. +..+|.. +++|+.|+|++|.+.+.+..+. +|+.|+|++| +++.+|.. +++|+.|+
T Consensus 403 p~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~-~L~~L~Ls~N-~l~~ip~~~~l~~L~~L~ 479 (549)
T 2z81_A 403 PDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNNNLDSFSLFLP-RLQELYISRN-KLKTLPDASLFPVLLVMK 479 (549)
T ss_dssp CSCCCCCTTCCEEECTTSC-CSCCCTTSCTTCSEEECCSSCCSCCCCCCT-TCCEEECCSS-CCSSCCCGGGCTTCCEEE
T ss_pred ChhhcccccccEEECCCCC-cccccchhcCCceEEECCCCChhhhcccCC-hhcEEECCCC-ccCcCCCcccCccCCEEe
Confidence 98766 89999999965 6667754 4689999999998887543332 8999999996 56788875 77899999
Q ss_pred cccccccCCCC
Q 041335 326 ASVLEKLSKPS 336 (594)
Q Consensus 326 ~~~c~~L~~~~ 336 (594)
+++|. ++.++
T Consensus 480 Ls~N~-l~~~~ 489 (549)
T 2z81_A 480 ISRNQ-LKSVP 489 (549)
T ss_dssp CCSSC-CCCCC
T ss_pred cCCCc-cCCcC
Confidence 99874 45444
No 33
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.08 E-value=4.5e-10 Score=112.58 Aligned_cols=145 Identities=26% Similarity=0.282 Sum_probs=112.1
Q ss_pred cCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCccc--ccccEEEeecCCCCcccCCCC-C---Ccc
Q 041335 186 EIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPELP--LCLKSLDLMDCKILQSLPALP-L---CLE 259 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~i~--~~L~~L~L~~c~~l~~lp~~~-~---~L~ 259 (594)
.+..+++|+.|+++++.++.++ .++.+++|++|+|++|. +..++.+. ++|+.|++++|. +..+|... . +|+
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNK-LHDISALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLK 112 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSC-CCCCGGGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCC
T ss_pred ccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCC-CCCchhhcCCCCCCEEECCCCc-cCccChhHhcCCcCCC
Confidence 4566889999999999999886 58899999999999876 66677644 699999999987 55666543 3 899
Q ss_pred EEEeeCCCCCCcCCC----CCCCccEEeeecCCCCCCchhhh---cccccccccccccccccCcc----ccccccccccc
Q 041335 260 SLALTGCNMLRSIPE----LPLCLKYLNLEDCNMLRSLPELS---LCLQSLNARNCNRLRSLPEI----PSCLQELDASV 328 (594)
Q Consensus 260 ~L~Ls~c~~l~~lp~----~~~~L~~L~Ls~c~~~~~L~~l~---~~L~~L~L~~c~~L~~lp~l----~~sL~~L~~~~ 328 (594)
+|+|++|.. ..+|. .+++|+.|+|++|.+.+-.+... .+|+.|++++|+ ++.+|.. +++|+.|++++
T Consensus 113 ~L~L~~n~l-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 113 ELVLVENQL-QSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGVFDKLTQLKDLRLYQ 190 (272)
T ss_dssp EEECTTSCC-CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred EEECCCCcC-CccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC-cCccCHHHhcCCccCCEEECCC
Confidence 999999764 45553 24789999999998876444321 289999999974 5666652 57899999998
Q ss_pred ccccCCCC
Q 041335 329 LEKLSKPS 336 (594)
Q Consensus 329 c~~L~~~~ 336 (594)
|. ++.++
T Consensus 191 N~-l~~~~ 197 (272)
T 3rfs_A 191 NQ-LKSVP 197 (272)
T ss_dssp SC-CSCCC
T ss_pred Cc-CCccC
Confidence 85 44444
No 34
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.08 E-value=4.4e-10 Score=121.41 Aligned_cols=138 Identities=30% Similarity=0.453 Sum_probs=64.4
Q ss_pred cCcCCCCccEEEEeCCCCCccCcc-------------------ccCCCCCcEEEccCCCCCccCCcccccccEEEeecCC
Q 041335 186 EIACLSSLTGLHLSGNNFESLPAS-------------------IKQLSQLSSLDLKDCKMLQSLPELPLCLKSLDLMDCK 246 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~~lP~~-------------------~~~l~~L~~L~Ls~c~~l~~lP~i~~~L~~L~L~~c~ 246 (594)
.++.+++|++|++++|.++.+|.. ++.+++|++|++++|. +..+|.+.++|+.|++++|.
T Consensus 148 ~~~~l~~L~~L~l~~N~l~~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~-l~~l~~~~~~L~~L~l~~n~ 226 (454)
T 1jl5_A 148 ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAGNNI 226 (454)
T ss_dssp CCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSSC
T ss_pred ccCCCCCCCEEECCCCcCcccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCc-CCcCCCCcCcccEEECcCCc
Confidence 455555666666666555555533 4444444444444433 33344433445555555543
Q ss_pred CCcccCCCCC---CccEEEeeCCCCCCcCCCCCCCccEEeeecCCCCCCchhhhcccccccccccccccccCcccccccc
Q 041335 247 ILQSLPALPL---CLESLALTGCNMLRSIPELPLCLKYLNLEDCNMLRSLPELSLCLQSLNARNCNRLRSLPEIPSCLQE 323 (594)
Q Consensus 247 ~l~~lp~~~~---~L~~L~Ls~c~~l~~lp~~~~~L~~L~Ls~c~~~~~L~~l~~~L~~L~L~~c~~L~~lp~l~~sL~~ 323 (594)
+..+|. +. +|++|++++| .+..+|..+++|+.|++++|.+.+ +|....+|+.|++++| .++.+|..+++|+.
T Consensus 227 -l~~lp~-~~~l~~L~~L~l~~N-~l~~l~~~~~~L~~L~l~~N~l~~-l~~~~~~L~~L~ls~N-~l~~l~~~~~~L~~ 301 (454)
T 1jl5_A 227 -LEELPE-LQNLPFLTTIYADNN-LLKTLPDLPPSLEALNVRDNYLTD-LPELPQSLTFLDVSEN-IFSGLSELPPNLYY 301 (454)
T ss_dssp -CSSCCC-CTTCTTCCEEECCSS-CCSSCCSCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSS-CCSEESCCCTTCCE
T ss_pred -CCcccc-cCCCCCCCEEECCCC-cCCcccccccccCEEECCCCcccc-cCcccCcCCEEECcCC-ccCcccCcCCcCCE
Confidence 334443 22 4555555553 233444444555555555554443 3322234555555543 23444444444444
Q ss_pred cccccc
Q 041335 324 LDASVL 329 (594)
Q Consensus 324 L~~~~c 329 (594)
|++++|
T Consensus 302 L~l~~N 307 (454)
T 1jl5_A 302 LNASSN 307 (454)
T ss_dssp EECCSS
T ss_pred EECcCC
Confidence 444443
No 35
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.07 E-value=6.9e-10 Score=120.19 Aligned_cols=150 Identities=25% Similarity=0.299 Sum_probs=83.3
Q ss_pred ccCcCCCCccEEEEeCCCCCcc-CccccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCCCC---
Q 041335 185 QEIACLSSLTGLHLSGNNFESL-PASIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPALPL--- 256 (594)
Q Consensus 185 ~~l~~L~~L~~L~l~~~~l~~l-P~~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~~~--- 256 (594)
+.|..+++|++|++++|.++.+ |..|+++++|++|+|++|. +..+|. +. ++|+.|+|++|......|..+.
T Consensus 50 ~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~ 128 (477)
T 2id5_A 50 DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY 128 (477)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEECCCCccccCChhHccccc
Confidence 4566677777777777777655 5567777777777777654 556654 22 5677777777664443344433
Q ss_pred CccEEEeeCCCCCCcCCC---CCCCccEEeeecCCCCCCchhhh---cccccccccccccccccCcc----ccccccccc
Q 041335 257 CLESLALTGCNMLRSIPE---LPLCLKYLNLEDCNMLRSLPELS---LCLQSLNARNCNRLRSLPEI----PSCLQELDA 326 (594)
Q Consensus 257 ~L~~L~Ls~c~~l~~lp~---~~~~L~~L~Ls~c~~~~~L~~l~---~~L~~L~L~~c~~L~~lp~l----~~sL~~L~~ 326 (594)
+|++|+|++|......|. .+++|+.|+|++|.+.+-.+... .+|+.|+|++|. +..++.. .++|+.|++
T Consensus 129 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l 207 (477)
T 2id5_A 129 NLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEI 207 (477)
T ss_dssp TCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC-CCEECTTCSCSCTTCCEEEE
T ss_pred cCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc-CcEeChhhcccCcccceeeC
Confidence 677777776543322222 23566777777666554222111 155556665543 2223221 345555555
Q ss_pred ccccccCCCC
Q 041335 327 SVLEKLSKPS 336 (594)
Q Consensus 327 ~~c~~L~~~~ 336 (594)
++|..++.++
T Consensus 208 ~~~~~~~~~~ 217 (477)
T 2id5_A 208 SHWPYLDTMT 217 (477)
T ss_dssp ECCTTCCEEC
T ss_pred CCCccccccC
Confidence 5555444443
No 36
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.07 E-value=3e-10 Score=115.52 Aligned_cols=149 Identities=26% Similarity=0.308 Sum_probs=107.4
Q ss_pred cccCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc---cc--ccccEEEeecCCCCcccCCCCC--
Q 041335 184 LQEIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE---LP--LCLKSLDLMDCKILQSLPALPL-- 256 (594)
Q Consensus 184 l~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~---i~--~~L~~L~L~~c~~l~~lp~~~~-- 256 (594)
+..+..+++|++|++++|.++.+|..+..+++|++|++++|. +..++. +. ++|+.|++++|......|..+.
T Consensus 71 ~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 149 (306)
T 2z66_A 71 SQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 149 (306)
T ss_dssp EHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTC
T ss_pred ccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEECCCCcCCccchhhcccC
Confidence 345566889999999999988888888899999999999865 555543 32 6899999998875555555444
Q ss_pred -CccEEEeeCCCCCC-cCCCC---CCCccEEeeecCCCCCCchhhh---cccccccccccccccccCcc----ccccccc
Q 041335 257 -CLESLALTGCNMLR-SIPEL---PLCLKYLNLEDCNMLRSLPELS---LCLQSLNARNCNRLRSLPEI----PSCLQEL 324 (594)
Q Consensus 257 -~L~~L~Ls~c~~l~-~lp~~---~~~L~~L~Ls~c~~~~~L~~l~---~~L~~L~L~~c~~L~~lp~l----~~sL~~L 324 (594)
+|++|+|++|...+ .+|.. +++|+.|+|++|.+.+..+... .+|+.|+|++|. ++.++.. .++|+.|
T Consensus 150 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 228 (306)
T 2z66_A 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVL 228 (306)
T ss_dssp TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEE
T ss_pred cCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEe
Confidence 88999998876544 35543 4788999999988776444322 278888998854 5555542 4778889
Q ss_pred ccccccccCC
Q 041335 325 DASVLEKLSK 334 (594)
Q Consensus 325 ~~~~c~~L~~ 334 (594)
++++|.....
T Consensus 229 ~L~~N~l~~~ 238 (306)
T 2z66_A 229 DYSLNHIMTS 238 (306)
T ss_dssp ECTTSCCCBC
T ss_pred ECCCCCCccc
Confidence 9988854443
No 37
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.07 E-value=6.4e-10 Score=112.73 Aligned_cols=143 Identities=29% Similarity=0.240 Sum_probs=90.4
Q ss_pred CCccEEEEeCCCCCcc-CccccCCCCCcEEEccCCCCCccCCc--ccccccEEEeecCCCCcccCCCCC---CccEEEee
Q 041335 191 SSLTGLHLSGNNFESL-PASIKQLSQLSSLDLKDCKMLQSLPE--LPLCLKSLDLMDCKILQSLPALPL---CLESLALT 264 (594)
Q Consensus 191 ~~L~~L~l~~~~l~~l-P~~~~~l~~L~~L~Ls~c~~l~~lP~--i~~~L~~L~L~~c~~l~~lp~~~~---~L~~L~Ls 264 (594)
++|++|++++|.++.+ |..|..+++|++|+|++|. +..+|. -.++|+.|++++|. +..+|..+. +|++|+|+
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~ 108 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVS 108 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECC
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCCCCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECC
Confidence 4677777777777765 4567777777777777654 555554 22577777777765 566776554 77777777
Q ss_pred CCCCCCcCCC----CCCCccEEeeecCCCCCCchhhh---cccccccccccccccccCcc----cccccccccccccccC
Q 041335 265 GCNMLRSIPE----LPLCLKYLNLEDCNMLRSLPELS---LCLQSLNARNCNRLRSLPEI----PSCLQELDASVLEKLS 333 (594)
Q Consensus 265 ~c~~l~~lp~----~~~~L~~L~Ls~c~~~~~L~~l~---~~L~~L~L~~c~~L~~lp~l----~~sL~~L~~~~c~~L~ 333 (594)
+| .++.+|. .+++|+.|+|++|.+.+-.+... .+|+.|+|++| .++.+|.. +++|+.|+++++. ++
T Consensus 109 ~N-~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~-l~ 185 (290)
T 1p9a_G 109 FN-RLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENS-LY 185 (290)
T ss_dssp SS-CCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSC-CC
T ss_pred CC-cCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCc-CC
Confidence 74 3444542 23677777777777664333221 16777777774 45666652 4667777776653 44
Q ss_pred CCCcc
Q 041335 334 KPSLD 338 (594)
Q Consensus 334 ~~~~~ 338 (594)
.++..
T Consensus 186 ~ip~~ 190 (290)
T 1p9a_G 186 TIPKG 190 (290)
T ss_dssp CCCTT
T ss_pred ccChh
Confidence 55543
No 38
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.07 E-value=5.5e-10 Score=120.72 Aligned_cols=150 Identities=21% Similarity=0.159 Sum_probs=104.4
Q ss_pred cCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc-ccccccEEEeecCCCCcccCCCCC-CccEEEe
Q 041335 186 EIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE-LPLCLKSLDLMDCKILQSLPALPL-CLESLAL 263 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i~~~L~~L~L~~c~~l~~lp~~~~-~L~~L~L 263 (594)
.+..+++|++|++++|.++.+| ++.+++|+.|++++|. +..++- -.++|+.|++++|. +..+|-.-. +|++|++
T Consensus 165 ~~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~-l~~~~l~~l~~L~~L~Ls~N~-l~~ip~~~l~~L~~L~l 240 (457)
T 3bz5_A 165 DVTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNN-ITKLDLNQNIQLTFLDCSSNK-LTEIDVTPLTQLTYFDC 240 (457)
T ss_dssp CCTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSC-CSCCCCTTCTTCSEEECCSSC-CSCCCCTTCTTCSEEEC
T ss_pred ccccCCcCCEEECCCCccceec--cccCCCCCEEECcCCc-CCeeccccCCCCCEEECcCCc-ccccCccccCCCCEEEe
Confidence 3666778888888888888876 7788888888888765 555542 22688888888876 555762211 8888888
Q ss_pred eCCCCCCcCC-CCCCC----------ccEEeeecCCCCCCchhhh-cccccccccccccccccCcccccccccccccccc
Q 041335 264 TGCNMLRSIP-ELPLC----------LKYLNLEDCNMLRSLPELS-LCLQSLNARNCNRLRSLPEIPSCLQELDASVLEK 331 (594)
Q Consensus 264 s~c~~l~~lp-~~~~~----------L~~L~Ls~c~~~~~L~~l~-~~L~~L~L~~c~~L~~lp~l~~sL~~L~~~~c~~ 331 (594)
++|.. ..+| ..+++ |+.|++++|.+.+.+|... .+|+.|+|++|+.++.+|....+|+.|++++|++
T Consensus 241 ~~N~l-~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~ 319 (457)
T 3bz5_A 241 SVNPL-TELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPK 319 (457)
T ss_dssp CSSCC-SCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTT
T ss_pred eCCcC-CCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhccc
Confidence 88644 3344 33343 4555666666666665322 2788888998888888887777888888888888
Q ss_pred cCCCCcccc
Q 041335 332 LSKPSLDLI 340 (594)
Q Consensus 332 L~~~~~~~~ 340 (594)
|+.+.....
T Consensus 320 L~~L~L~~N 328 (457)
T 3bz5_A 320 LVYLYLNNT 328 (457)
T ss_dssp CCEEECTTC
T ss_pred CCEEECCCC
Confidence 887765533
No 39
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.06 E-value=2.3e-10 Score=127.79 Aligned_cols=146 Identities=29% Similarity=0.331 Sum_probs=112.4
Q ss_pred eeecccCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCccc--ccccEEEeecCCCCcccCCCCC--
Q 041335 181 MEILQEIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPELP--LCLKSLDLMDCKILQSLPALPL-- 256 (594)
Q Consensus 181 i~~l~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~i~--~~L~~L~L~~c~~l~~lp~~~~-- 256 (594)
+..++.+..|++|+.|++++|.++.+|+ +..+++|+.|+|++|. +..+|.+. ++|+.|+|++|. +..+|....
T Consensus 55 i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~ 131 (605)
T 1m9s_A 55 IKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSLSLEHNG-ISDINGLVHLP 131 (605)
T ss_dssp CCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCTTSTTCTTCCEEECTTSC-CCCCGGGGGCT
T ss_pred CCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCChhhccCCCCCEEEecCCC-CCCCccccCCC
Confidence 3334578889999999999999998887 8999999999999875 77777754 689999999987 555654322
Q ss_pred CccEEEeeCCCCCCcCCC--CCCCccEEeeecCCCCCCchhhh--cccccccccccccccccCcc--ccccccccccccc
Q 041335 257 CLESLALTGCNMLRSIPE--LPLCLKYLNLEDCNMLRSLPELS--LCLQSLNARNCNRLRSLPEI--PSCLQELDASVLE 330 (594)
Q Consensus 257 ~L~~L~Ls~c~~l~~lp~--~~~~L~~L~Ls~c~~~~~L~~l~--~~L~~L~L~~c~~L~~lp~l--~~sL~~L~~~~c~ 330 (594)
+|+.|+|++|. +..++. .+++|+.|+|++|.+.+..| +. .+|+.|+|++| .+..+|.+ +++|+.|++++|+
T Consensus 132 ~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 132 QLESLYLGNNK-ITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp TCSEEECCSSC-CCCCGGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCSEE
T ss_pred ccCEEECCCCc-cCCchhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCC-CCCCChHHccCCCCCEEEccCCc
Confidence 89999999964 444542 35789999999998887555 22 28999999986 56667765 6789999998876
Q ss_pred cc
Q 041335 331 KL 332 (594)
Q Consensus 331 ~L 332 (594)
..
T Consensus 209 l~ 210 (605)
T 1m9s_A 209 CL 210 (605)
T ss_dssp EE
T ss_pred Cc
Confidence 43
No 40
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.05 E-value=4.5e-10 Score=116.80 Aligned_cols=122 Identities=24% Similarity=0.265 Sum_probs=61.8
Q ss_pred cCcCCCCccEEEEeCCCCCccCcc-ccCCCCCcEEEccCCCCCccCCc---cc--ccccEEEeecCCCCcccCC-CCC--
Q 041335 186 EIACLSSLTGLHLSGNNFESLPAS-IKQLSQLSSLDLKDCKMLQSLPE---LP--LCLKSLDLMDCKILQSLPA-LPL-- 256 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~~lP~~-~~~l~~L~~L~Ls~c~~l~~lP~---i~--~~L~~L~L~~c~~l~~lp~-~~~-- 256 (594)
.+..+++|++|++++|.++.+|.. |+.+++|++|+|++|. +..+|. +. ++|+.|++++|..+..++. .+.
T Consensus 95 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 173 (353)
T 2z80_A 95 SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 173 (353)
T ss_dssp TTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred hcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCC
Confidence 355555666666666666555544 5556666666666543 444443 21 4566666666544444432 222
Q ss_pred -CccEEEeeCCCCCCcCCCC---CCCccEEeeecCCCCCCchhh----hcccccccccccc
Q 041335 257 -CLESLALTGCNMLRSIPEL---PLCLKYLNLEDCNMLRSLPEL----SLCLQSLNARNCN 309 (594)
Q Consensus 257 -~L~~L~Ls~c~~l~~lp~~---~~~L~~L~Ls~c~~~~~L~~l----~~~L~~L~L~~c~ 309 (594)
+|++|++++|...+..|.. +++|+.|++++|.+. .++.. ..+|+.|++++|.
T Consensus 174 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 174 TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCB
T ss_pred CCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCc
Confidence 5566666655433333332 244556666655542 23321 1156666666643
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.05 E-value=8.9e-10 Score=119.28 Aligned_cols=151 Identities=25% Similarity=0.235 Sum_probs=109.8
Q ss_pred cccCcCCCCccEEEEeCCCCCccCcc-ccCCCCCcEEEccCCCCCccCCc-cc--ccccEEEeecCCCCcccCCCCC---
Q 041335 184 LQEIACLSSLTGLHLSGNNFESLPAS-IKQLSQLSSLDLKDCKMLQSLPE-LP--LCLKSLDLMDCKILQSLPALPL--- 256 (594)
Q Consensus 184 l~~l~~L~~L~~L~l~~~~l~~lP~~-~~~l~~L~~L~Ls~c~~l~~lP~-i~--~~L~~L~L~~c~~l~~lp~~~~--- 256 (594)
+..|..+++|++|++++|.++.+|.. |+++++|++|+|++|......|. +. ++|+.|++++|......|..+.
T Consensus 73 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 152 (477)
T 2id5_A 73 PGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLN 152 (477)
T ss_dssp TTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCT
T ss_pred hhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCC
Confidence 56788999999999999999998864 78999999999998874433344 43 6899999999874444444444
Q ss_pred CccEEEeeCCCCCCcCCC----CCCCccEEeeecCCCCCCchhhh---cccccccccccccccccCcc---ccccccccc
Q 041335 257 CLESLALTGCNMLRSIPE----LPLCLKYLNLEDCNMLRSLPELS---LCLQSLNARNCNRLRSLPEI---PSCLQELDA 326 (594)
Q Consensus 257 ~L~~L~Ls~c~~l~~lp~----~~~~L~~L~Ls~c~~~~~L~~l~---~~L~~L~L~~c~~L~~lp~l---~~sL~~L~~ 326 (594)
+|++|+|++| .+..+|. .+++|+.|+|++|.+.+..+... .+|+.|++++|+.++.+|.. ..+|+.|++
T Consensus 153 ~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 231 (477)
T 2id5_A 153 SLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSI 231 (477)
T ss_dssp TCCEEEEESC-CCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEE
T ss_pred CCCEEECCCC-cCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEEC
Confidence 8999999996 4555653 35788889998887765322111 16888888888887777764 346778888
Q ss_pred ccccccCCCC
Q 041335 327 SVLEKLSKPS 336 (594)
Q Consensus 327 ~~c~~L~~~~ 336 (594)
++|. ++.++
T Consensus 232 ~~n~-l~~~~ 240 (477)
T 2id5_A 232 THCN-LTAVP 240 (477)
T ss_dssp ESSC-CCSCC
T ss_pred cCCc-ccccC
Confidence 7763 44444
No 42
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.05 E-value=1.2e-09 Score=112.46 Aligned_cols=79 Identities=22% Similarity=0.364 Sum_probs=36.4
Q ss_pred cCcCCCCccEEEEeCCCCCcc-CccccCCCCCcEEEccCCCCCccCCc-ccccccEEEeecCCCCcccCCC-CC---Ccc
Q 041335 186 EIACLSSLTGLHLSGNNFESL-PASIKQLSQLSSLDLKDCKMLQSLPE-LPLCLKSLDLMDCKILQSLPAL-PL---CLE 259 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~~l-P~~~~~l~~L~~L~Ls~c~~l~~lP~-i~~~L~~L~L~~c~~l~~lp~~-~~---~L~ 259 (594)
.+..+++|++|++++|.++.+ |..|+++++|++|+|++|. +..+|. +.++|+.|++++|. +..+|.. +. +|+
T Consensus 73 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~ 150 (332)
T 2ft3_A 73 DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPNLPSSLVELRIHDNR-IRKVPKGVFSGLRNMN 150 (332)
T ss_dssp TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSSCCTTCCEEECCSSC-CCCCCSGGGSSCSSCC
T ss_pred HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCccccccCCEEECCCCc-cCccCHhHhCCCccCC
Confidence 344455555555555555443 3445555555555555433 444444 33455555555443 3333332 11 455
Q ss_pred EEEeeCC
Q 041335 260 SLALTGC 266 (594)
Q Consensus 260 ~L~Ls~c 266 (594)
+|++++|
T Consensus 151 ~L~l~~n 157 (332)
T 2ft3_A 151 CIEMGGN 157 (332)
T ss_dssp EEECCSC
T ss_pred EEECCCC
Confidence 5555543
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.04 E-value=8.1e-10 Score=113.70 Aligned_cols=140 Identities=21% Similarity=0.279 Sum_probs=72.2
Q ss_pred cCcCCCCccEEEEeCCCCCcc-CccccCCCCCcEEEccCCCCCccCCc-ccccccEEEeecCCCCcccCCC-CC---Ccc
Q 041335 186 EIACLSSLTGLHLSGNNFESL-PASIKQLSQLSSLDLKDCKMLQSLPE-LPLCLKSLDLMDCKILQSLPAL-PL---CLE 259 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~~l-P~~~~~l~~L~~L~Ls~c~~l~~lP~-i~~~L~~L~L~~c~~l~~lp~~-~~---~L~ 259 (594)
.+..+++|++|++++|.++.+ |..|+.+++|++|+|++|. ++.+|. +.++|+.|++++|. +..++.. +. +|+
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~ 148 (330)
T 1xku_A 71 DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMPKTLQELRVHENE-ITKVRKSVFNGLNQMI 148 (330)
T ss_dssp TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCCTTCCEEECCSSC-CCBBCHHHHTTCTTCC
T ss_pred hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhcccccEEECCCCc-ccccCHhHhcCCcccc
Confidence 456666666666666666655 5566666666666666554 556665 44566666666654 3333321 11 566
Q ss_pred EEEeeCCCCCC--cCCC---CCCCccEEeeecCCCCCCchh-hhccccccccccccccccc-Ccc---cccccccccccc
Q 041335 260 SLALTGCNMLR--SIPE---LPLCLKYLNLEDCNMLRSLPE-LSLCLQSLNARNCNRLRSL-PEI---PSCLQELDASVL 329 (594)
Q Consensus 260 ~L~Ls~c~~l~--~lp~---~~~~L~~L~Ls~c~~~~~L~~-l~~~L~~L~L~~c~~L~~l-p~l---~~sL~~L~~~~c 329 (594)
+|++++|.... ..+. .+++|+.|++++|.+.+ +|. ...+|+.|++++|. ++.+ |.. .++|+.|++++|
T Consensus 149 ~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n 226 (330)
T 1xku_A 149 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLPPSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFN 226 (330)
T ss_dssp EEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCCTTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSS
T ss_pred EEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCccccccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCC
Confidence 66666543321 2222 13455666666555443 221 11255556665543 2222 221 344555555554
No 44
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.04 E-value=2.9e-10 Score=116.27 Aligned_cols=139 Identities=22% Similarity=0.363 Sum_probs=80.3
Q ss_pred ccCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCccc--ccccEEEeecCCCCcccCCCCC--CccE
Q 041335 185 QEIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPELP--LCLKSLDLMDCKILQSLPALPL--CLES 260 (594)
Q Consensus 185 ~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~i~--~~L~~L~L~~c~~l~~lp~~~~--~L~~ 260 (594)
+++..+++|++|++++|.++.+|. +..+++|++|+|++|. +..+|.+. ++|+.|++++|. +..+|.... +|++
T Consensus 57 ~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~ 133 (308)
T 1h6u_A 57 EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDLTSTQ-ITDVTPLAGLSNLQV 133 (308)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEECTTSC-CCCCGGGTTCTTCCE
T ss_pred hhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEECCCCC-CCCchhhcCCCCCCE
Confidence 356666677777777777766665 6677777777777654 55555533 467777777665 444443111 6677
Q ss_pred EEeeCCCCCCcCCC--CCCCccEEeeecCCCCCCchhhh--cccccccccccccccccCcc--cccccccccccc
Q 041335 261 LALTGCNMLRSIPE--LPLCLKYLNLEDCNMLRSLPELS--LCLQSLNARNCNRLRSLPEI--PSCLQELDASVL 329 (594)
Q Consensus 261 L~Ls~c~~l~~lp~--~~~~L~~L~Ls~c~~~~~L~~l~--~~L~~L~L~~c~~L~~lp~l--~~sL~~L~~~~c 329 (594)
|++++|. +..++. .+++|+.|+|++|.+.+ ++.+. .+|+.|++++| .++.+|.+ +++|+.|++++|
T Consensus 134 L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N 205 (308)
T 1h6u_A 134 LYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSD-LTPLANLSKLTTLKADDN-KISDISPLASLPNLIEVHLKNN 205 (308)
T ss_dssp EECCSSC-CCCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECTTS
T ss_pred EECCCCc-cCcCccccCCCCccEEEccCCcCCC-ChhhcCCCCCCEEECCCC-ccCcChhhcCCCCCCEEEccCC
Confidence 7776653 333432 23567777777666554 22221 15666666664 34444433 455666666555
No 45
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.04 E-value=6.7e-10 Score=113.53 Aligned_cols=139 Identities=24% Similarity=0.305 Sum_probs=101.4
Q ss_pred cCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCccc--ccccEEEeecCCCCcccCCCCC--CccEE
Q 041335 186 EIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPELP--LCLKSLDLMDCKILQSLPALPL--CLESL 261 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~i~--~~L~~L~L~~c~~l~~lp~~~~--~L~~L 261 (594)
....+++|++|+++++.++.+| .+..+++|++|+|++|. +..+|.+. ++|+.|++++|. +..+|.... +|++|
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L 112 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ-ITDLAPLKNLTKITELELSGNP-LKNVSAIAGLQSIKTL 112 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGGGTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEE
T ss_pred cHHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCc-CCCChhHccCCCCCEEEccCCc-CCCchhhcCCCCCCEE
Confidence 3455778899999999888887 68888999999998774 66676643 689999999887 666653222 88999
Q ss_pred EeeCCCCCCcCCC--CCCCccEEeeecCCCCCCchhhh--cccccccccccccccccCcc--ccccccccccccc
Q 041335 262 ALTGCNMLRSIPE--LPLCLKYLNLEDCNMLRSLPELS--LCLQSLNARNCNRLRSLPEI--PSCLQELDASVLE 330 (594)
Q Consensus 262 ~Ls~c~~l~~lp~--~~~~L~~L~Ls~c~~~~~L~~l~--~~L~~L~L~~c~~L~~lp~l--~~sL~~L~~~~c~ 330 (594)
+|++|. +..+|. .+++|+.|++++|.+.+..+ +. .+|+.|+|++| .++.+|.+ +++|+.|++++|.
T Consensus 113 ~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 113 DLTSTQ-ITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNA-QVSDLTPLANLSKLTTLKADDNK 184 (308)
T ss_dssp ECTTSC-CCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC
T ss_pred ECCCCC-CCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCC-cCCCChhhcCCCCCCEEECCCCc
Confidence 998865 455553 35788999999887765332 22 27888888886 45666654 5778888888764
No 46
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.03 E-value=1.3e-09 Score=104.51 Aligned_cols=140 Identities=28% Similarity=0.248 Sum_probs=82.3
Q ss_pred CCccEEEEeCCCCCccCcc-ccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCCC-C---CccEE
Q 041335 191 SSLTGLHLSGNNFESLPAS-IKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPALP-L---CLESL 261 (594)
Q Consensus 191 ~~L~~L~l~~~~l~~lP~~-~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~~-~---~L~~L 261 (594)
++|++|++++|.++.+|.. |+.+++|++|+|++|. +..+|. +. ++|+.|++++|. +..+|... . +|++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCEE
Confidence 3677777777777766543 5677777777777654 555554 22 567777777765 44555432 2 67777
Q ss_pred EeeCCCCCCcCCCC----CCCccEEeeecCCCCCCchhhh---cccccccccccccccccCcccccccccccccccccCC
Q 041335 262 ALTGCNMLRSIPEL----PLCLKYLNLEDCNMLRSLPELS---LCLQSLNARNCNRLRSLPEIPSCLQELDASVLEKLSK 334 (594)
Q Consensus 262 ~Ls~c~~l~~lp~~----~~~L~~L~Ls~c~~~~~L~~l~---~~L~~L~L~~c~~L~~lp~l~~sL~~L~~~~c~~L~~ 334 (594)
+|++|. +..+|.. +++|+.|+|++|.+.+-.+... .+|+.|+|++|+.... +++|+.|+++.+..-..
T Consensus 106 ~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~----~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 106 ALNTNQ-LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT----CPGIRYLSEWINKHSGV 180 (208)
T ss_dssp ECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCC----TTTTHHHHHHHHHCTTT
T ss_pred EcCCCc-CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecC----CCCHHHHHHHHHhCCce
Confidence 777653 4444432 3567777777776654333211 1667777777654433 33566666666555545
Q ss_pred CCc
Q 041335 335 PSL 337 (594)
Q Consensus 335 ~~~ 337 (594)
+|.
T Consensus 181 ip~ 183 (208)
T 2o6s_A 181 VRN 183 (208)
T ss_dssp BBC
T ss_pred eec
Confidence 543
No 47
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.03 E-value=8.7e-10 Score=110.99 Aligned_cols=143 Identities=31% Similarity=0.338 Sum_probs=110.0
Q ss_pred cccCcCCCCccEEEEeCCC-CCcc-CccccCCCCCcEEEccCCCCCccC-Cc-cc--ccccEEEeecCCCCcccCCC-CC
Q 041335 184 LQEIACLSSLTGLHLSGNN-FESL-PASIKQLSQLSSLDLKDCKMLQSL-PE-LP--LCLKSLDLMDCKILQSLPAL-PL 256 (594)
Q Consensus 184 l~~l~~L~~L~~L~l~~~~-l~~l-P~~~~~l~~L~~L~Ls~c~~l~~l-P~-i~--~~L~~L~L~~c~~l~~lp~~-~~ 256 (594)
+..+..+++|++|++++|. ++.+ |..+..+++|++|+|++|. +..+ |. +. ++|+.|++++|. +..+|.. +.
T Consensus 73 ~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~ 150 (285)
T 1ozn_A 73 AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGPGLFRGLAALQYLYLQDNA-LQALPDDTFR 150 (285)
T ss_dssp TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTT
T ss_pred HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECHhHhhCCcCCCEEECCCCc-ccccCHhHhc
Confidence 5578899999999999997 8887 6789999999999999887 5555 44 43 699999999987 5566654 43
Q ss_pred ---CccEEEeeCCCCCCcCCCC----CCCccEEeeecCCCCCCchhhh---cccccccccccccccccCcc----ccccc
Q 041335 257 ---CLESLALTGCNMLRSIPEL----PLCLKYLNLEDCNMLRSLPELS---LCLQSLNARNCNRLRSLPEI----PSCLQ 322 (594)
Q Consensus 257 ---~L~~L~Ls~c~~l~~lp~~----~~~L~~L~Ls~c~~~~~L~~l~---~~L~~L~L~~c~~L~~lp~l----~~sL~ 322 (594)
+|++|+|++| .++.+|.. +++|+.|+|++|.+.+..|... .+|+.|+|++| .++.+|.. .++|+
T Consensus 151 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~ 228 (285)
T 1ozn_A 151 DLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQ 228 (285)
T ss_dssp TCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCC
T ss_pred cCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccC
Confidence 8999999996 55666642 4789999999999877544332 28999999996 45556532 45677
Q ss_pred cccccccc
Q 041335 323 ELDASVLE 330 (594)
Q Consensus 323 ~L~~~~c~ 330 (594)
.|++++++
T Consensus 229 ~L~l~~N~ 236 (285)
T 1ozn_A 229 YLRLNDNP 236 (285)
T ss_dssp EEECCSSC
T ss_pred EEeccCCC
Confidence 77776653
No 48
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.03 E-value=2.1e-09 Score=111.79 Aligned_cols=149 Identities=17% Similarity=0.182 Sum_probs=83.6
Q ss_pred CcCCCCccEEEEeCCCCC-ccCc-cccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCCCC----
Q 041335 187 IACLSSLTGLHLSGNNFE-SLPA-SIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPALPL---- 256 (594)
Q Consensus 187 l~~L~~L~~L~l~~~~l~-~lP~-~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~~~---- 256 (594)
|..|++|++|++++|.+. .+|. .|.++++|..+.+.++..+..+|. +. ++|+.|++++|. +..+|....
T Consensus 50 f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~ 128 (350)
T 4ay9_X 50 FSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSL 128 (350)
T ss_dssp STTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBS
T ss_pred HcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccc-cccCCchhhcccc
Confidence 444444444444444432 2332 234444444332222333444432 22 466666666655 444444322
Q ss_pred CccEEEeeCCCCCCcCCCC-----CCCccEEeeecCCCCCCchhhh---cccccccccccccccccCcc----ccccccc
Q 041335 257 CLESLALTGCNMLRSIPEL-----PLCLKYLNLEDCNMLRSLPELS---LCLQSLNARNCNRLRSLPEI----PSCLQEL 324 (594)
Q Consensus 257 ~L~~L~Ls~c~~l~~lp~~-----~~~L~~L~Ls~c~~~~~L~~l~---~~L~~L~L~~c~~L~~lp~l----~~sL~~L 324 (594)
.+..|++.++..+..+|.. ...|+.|+|++|.+.. ++... .+|+.|++.+++.++.+|.. .++|+.|
T Consensus 129 ~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~L 207 (350)
T 4ay9_X 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 207 (350)
T ss_dssp SCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEE
T ss_pred hhhhhhhccccccccccccchhhcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchh
Confidence 5566666666666666643 2457778888877653 33221 26888888888888888863 5778888
Q ss_pred ccccccccCCCCcc
Q 041335 325 DASVLEKLSKPSLD 338 (594)
Q Consensus 325 ~~~~c~~L~~~~~~ 338 (594)
+++++ .++++|..
T Consensus 208 dLs~N-~l~~lp~~ 220 (350)
T 4ay9_X 208 DISRT-RIHSLPSY 220 (350)
T ss_dssp ECTTS-CCCCCCSS
T ss_pred hcCCC-CcCccChh
Confidence 88876 46666643
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.02 E-value=2.4e-10 Score=116.31 Aligned_cols=142 Identities=23% Similarity=0.221 Sum_probs=76.6
Q ss_pred CcCCCCccEEEEeCCCCCcc---CccccCCCCCcEEEccCCCCCccCCc-cc--ccccEEEeecCCCCcccCC--CCC--
Q 041335 187 IACLSSLTGLHLSGNNFESL---PASIKQLSQLSSLDLKDCKMLQSLPE-LP--LCLKSLDLMDCKILQSLPA--LPL-- 256 (594)
Q Consensus 187 l~~L~~L~~L~l~~~~l~~l---P~~~~~l~~L~~L~Ls~c~~l~~lP~-i~--~~L~~L~L~~c~~l~~lp~--~~~-- 256 (594)
+..+++|++|++++|.++.+ |..+..+++|++|+|++|. +..+|. +. ++|+.|++++|. +..++. .+.
T Consensus 48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l 125 (306)
T 2z66_A 48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSL 125 (306)
T ss_dssp TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTC
T ss_pred hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCEEECCCCc-ccccccchhhhhc
Confidence 45666666666666666544 4555566666666666654 445554 32 466666666655 344432 222
Q ss_pred -CccEEEeeCCCCCCcCCCC---CCCccEEeeecCCCCC-Cchhhh---cccccccccccccccccCcc---cccccccc
Q 041335 257 -CLESLALTGCNMLRSIPEL---PLCLKYLNLEDCNMLR-SLPELS---LCLQSLNARNCNRLRSLPEI---PSCLQELD 325 (594)
Q Consensus 257 -~L~~L~Ls~c~~l~~lp~~---~~~L~~L~Ls~c~~~~-~L~~l~---~~L~~L~L~~c~~L~~lp~l---~~sL~~L~ 325 (594)
+|++|++++|......|.. +++|+.|+|++|.+.+ .+|... .+|+.|+|++|......|.. .++|+.|+
T Consensus 126 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 205 (306)
T 2z66_A 126 RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205 (306)
T ss_dssp TTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEE
Confidence 6666666665443333332 3566666666666554 222211 15666666665332222332 34566666
Q ss_pred ccccc
Q 041335 326 ASVLE 330 (594)
Q Consensus 326 ~~~c~ 330 (594)
+++|.
T Consensus 206 L~~N~ 210 (306)
T 2z66_A 206 MSHNN 210 (306)
T ss_dssp CTTSC
T ss_pred CCCCc
Confidence 66553
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.02 E-value=3.4e-10 Score=117.74 Aligned_cols=142 Identities=20% Similarity=0.212 Sum_probs=111.8
Q ss_pred cCcCCCCccEEEEeCCCCCccC-ccccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCC--CCC--
Q 041335 186 EIACLSSLTGLHLSGNNFESLP-ASIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPA--LPL-- 256 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~~lP-~~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~--~~~-- 256 (594)
.+..+++|++|++++|.++.++ ..|+++++|++|+|++|. +..+|. +. ++|+.|++++|. +..+|. .+.
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l 148 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNP-YKTLGETSLFSHL 148 (353)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEECTTCC-CSSSCSSCSCTTC
T ss_pred HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEEECCCCC-CcccCchhhhccC
Confidence 6888999999999999999774 569999999999999875 677776 43 689999999986 667776 333
Q ss_pred -CccEEEeeCCCCCCcCCC----CCCCccEEeeecCCCCCCchhhhc---ccccccccccccccccCcc----ccccccc
Q 041335 257 -CLESLALTGCNMLRSIPE----LPLCLKYLNLEDCNMLRSLPELSL---CLQSLNARNCNRLRSLPEI----PSCLQEL 324 (594)
Q Consensus 257 -~L~~L~Ls~c~~l~~lp~----~~~~L~~L~Ls~c~~~~~L~~l~~---~L~~L~L~~c~~L~~lp~l----~~sL~~L 324 (594)
+|++|++++|..++.++. .+++|+.|++++|.+.+..|.... +|+.|++++|. ++.+|.. +++|+.|
T Consensus 149 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L 227 (353)
T 2z80_A 149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECL 227 (353)
T ss_dssp TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEE
T ss_pred CCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc-cccchhhhhhhcccccEE
Confidence 899999999877777753 247899999999988765443222 78999999865 5677653 6789999
Q ss_pred cccccc
Q 041335 325 DASVLE 330 (594)
Q Consensus 325 ~~~~c~ 330 (594)
++++|.
T Consensus 228 ~L~~n~ 233 (353)
T 2z80_A 228 ELRDTD 233 (353)
T ss_dssp EEESCB
T ss_pred ECCCCc
Confidence 998875
No 51
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.02 E-value=1.4e-09 Score=108.85 Aligned_cols=148 Identities=21% Similarity=0.175 Sum_probs=103.2
Q ss_pred cCcCCCCccEEEEeCCCCCccCc-cccCCCCCcEEEccCCCCCccCC-c-cc--ccccEEEeecCCCCcccCC-CCC---
Q 041335 186 EIACLSSLTGLHLSGNNFESLPA-SIKQLSQLSSLDLKDCKMLQSLP-E-LP--LCLKSLDLMDCKILQSLPA-LPL--- 256 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~~lP~-~~~~l~~L~~L~Ls~c~~l~~lP-~-i~--~~L~~L~L~~c~~l~~lp~-~~~--- 256 (594)
.+..+++|++|++++|.++.+|. .|..+++|++|+|++|. +..++ . +. ++|+.|++++|. +..++. .+.
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~ 124 (276)
T 2z62_A 47 SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLK 124 (276)
T ss_dssp TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCT
T ss_pred HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEECCCCC-ccccCchhcccCC
Confidence 67788899999999998887765 68889999999999876 55554 3 43 689999998877 444444 343
Q ss_pred CccEEEeeCCCCCC-cCCCC---CCCccEEeeecCCCCCCchhhhc---ccc----cccccccccccccCcc---ccccc
Q 041335 257 CLESLALTGCNMLR-SIPEL---PLCLKYLNLEDCNMLRSLPELSL---CLQ----SLNARNCNRLRSLPEI---PSCLQ 322 (594)
Q Consensus 257 ~L~~L~Ls~c~~l~-~lp~~---~~~L~~L~Ls~c~~~~~L~~l~~---~L~----~L~L~~c~~L~~lp~l---~~sL~ 322 (594)
+|++|++++|.... .+|.. +++|+.|+|++|.+.+..+.... +|+ .|++++| .++.+|.. ..+|+
T Consensus 125 ~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~ 203 (276)
T 2z62_A 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLK 203 (276)
T ss_dssp TCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS-CCCEECTTSSCSCCEE
T ss_pred CCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC-cccccCccccCCCccc
Confidence 88999999865433 35644 47899999999887763322111 444 6778875 45555543 34789
Q ss_pred ccccccccccCCCCc
Q 041335 323 ELDASVLEKLSKPSL 337 (594)
Q Consensus 323 ~L~~~~c~~L~~~~~ 337 (594)
.|++++|. ++.++.
T Consensus 204 ~L~L~~n~-l~~~~~ 217 (276)
T 2z62_A 204 ELALDTNQ-LKSVPD 217 (276)
T ss_dssp EEECCSSC-CSCCCT
T ss_pred EEECCCCc-eeecCH
Confidence 99998875 565554
No 52
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.00 E-value=6.5e-10 Score=123.99 Aligned_cols=154 Identities=21% Similarity=0.169 Sum_probs=117.9
Q ss_pred cccCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCC-c-cc--ccccEEEeecCCCCcccCCCCC---
Q 041335 184 LQEIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLP-E-LP--LCLKSLDLMDCKILQSLPALPL--- 256 (594)
Q Consensus 184 l~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP-~-i~--~~L~~L~L~~c~~l~~lp~~~~--- 256 (594)
+..+..+++|++|++++|.++.+|..+..+++|++|++++|......| . +. ++|+.|++++|......|..+.
T Consensus 369 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 448 (606)
T 3vq2_A 369 SYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448 (606)
T ss_dssp CHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCT
T ss_pred hhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCC
Confidence 557788899999999999999999999999999999999887444444 2 33 6899999999986666777665
Q ss_pred CccEEEeeCCCCCCc-CCCC---CCCccEEeeecCCCCCCchhhh---cccccccccccccccccCcc---ccccccccc
Q 041335 257 CLESLALTGCNMLRS-IPEL---PLCLKYLNLEDCNMLRSLPELS---LCLQSLNARNCNRLRSLPEI---PSCLQELDA 326 (594)
Q Consensus 257 ~L~~L~Ls~c~~l~~-lp~~---~~~L~~L~Ls~c~~~~~L~~l~---~~L~~L~L~~c~~L~~lp~l---~~sL~~L~~ 326 (594)
+|++|++++|...+. +|.. +++|+.|+|++|.+.+..|... .+|+.|+|++|+..+..|.. +++|+.|++
T Consensus 449 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l 528 (606)
T 3vq2_A 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528 (606)
T ss_dssp TCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEEC
Confidence 899999999866553 5654 4789999999998877555422 27999999997655544654 567889999
Q ss_pred ccccccCCCCcc
Q 041335 327 SVLEKLSKPSLD 338 (594)
Q Consensus 327 ~~c~~L~~~~~~ 338 (594)
++|. ++.+|..
T Consensus 529 ~~N~-l~~~p~~ 539 (606)
T 3vq2_A 529 SFNR-IETSKGI 539 (606)
T ss_dssp TTSC-CCCEESC
T ss_pred CCCc-CcccCHh
Confidence 8885 5566543
No 53
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.00 E-value=7.4e-10 Score=128.39 Aligned_cols=150 Identities=19% Similarity=0.167 Sum_probs=119.2
Q ss_pred ecccCc--CCCCccEEEEeCCCCC-ccCccccCCCCCcEEEccCCCCCc--cCCc-cc---------ccccEEEeecCCC
Q 041335 183 ILQEIA--CLSSLTGLHLSGNNFE-SLPASIKQLSQLSSLDLKDCKMLQ--SLPE-LP---------LCLKSLDLMDCKI 247 (594)
Q Consensus 183 ~l~~l~--~L~~L~~L~l~~~~l~-~lP~~~~~l~~L~~L~Ls~c~~l~--~lP~-i~---------~~L~~L~L~~c~~ 247 (594)
+|+.++ .+++|++|++++|.+. .+|..|+++++|++|+|++|..+. .+|. +. ++|+.|+|++|.
T Consensus 481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~- 559 (876)
T 4ecn_A 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN- 559 (876)
T ss_dssp TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-
T ss_pred CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-
Confidence 567777 9999999999999855 889999999999999999987454 5776 43 389999999988
Q ss_pred CcccCC--CCC---CccEEEeeCCCCCCcCCC--CCCCccEEeeecCCCCCCchhhhc---c-cccccccccccccccCc
Q 041335 248 LQSLPA--LPL---CLESLALTGCNMLRSIPE--LPLCLKYLNLEDCNMLRSLPELSL---C-LQSLNARNCNRLRSLPE 316 (594)
Q Consensus 248 l~~lp~--~~~---~L~~L~Ls~c~~l~~lp~--~~~~L~~L~Ls~c~~~~~L~~l~~---~-L~~L~L~~c~~L~~lp~ 316 (594)
+..+|. .+. +|+.|+|++|... .+|. .+++|+.|+|++|.+. .+|.... + |+.|+|++|+ ++.+|.
T Consensus 560 L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~ 636 (876)
T 4ecn_A 560 LEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNK-LKYIPN 636 (876)
T ss_dssp CCBCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSC-CCSCCS
T ss_pred CCccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCC-CCcCch
Confidence 459998 665 8999999997644 8883 2478999999999988 6764322 5 9999999976 668887
Q ss_pred cc-----ccccccccccccccCCCC
Q 041335 317 IP-----SCLQELDASVLEKLSKPS 336 (594)
Q Consensus 317 l~-----~sL~~L~~~~c~~L~~~~ 336 (594)
.. ++|+.|++++|.....++
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred hhhccccCCCCEEECcCCcCCCccc
Confidence 52 238999999887554443
No 54
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.00 E-value=2.2e-09 Score=102.86 Aligned_cols=137 Identities=31% Similarity=0.368 Sum_probs=109.3
Q ss_pred cCcCCCCccEEEEeCCCCCccCcc-ccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCCC-C---
Q 041335 186 EIACLSSLTGLHLSGNNFESLPAS-IKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPALP-L--- 256 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~~lP~~-~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~~-~--- 256 (594)
.+..+++|++|++++|.++.+|.. |..+++|++|+|++|. +..+|. +. ++|+.|++++|. +..+|... .
T Consensus 47 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~ 124 (208)
T 2o6s_A 47 VFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELALNTNQ-LQSLPDGVFDKLT 124 (208)
T ss_dssp TTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCT
T ss_pred hhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCEEEcCCCc-CcccCHhHhccCC
Confidence 478899999999999999988765 6899999999999875 667776 33 699999999987 66676643 3
Q ss_pred CccEEEeeCCCCCCcCCCC----CCCccEEeeecCCCCCCchhhhcccccccccccccccccCccccccccccccccc
Q 041335 257 CLESLALTGCNMLRSIPEL----PLCLKYLNLEDCNMLRSLPELSLCLQSLNARNCNRLRSLPEIPSCLQELDASVLE 330 (594)
Q Consensus 257 ~L~~L~Ls~c~~l~~lp~~----~~~L~~L~Ls~c~~~~~L~~l~~~L~~L~L~~c~~L~~lp~l~~sL~~L~~~~c~ 330 (594)
+|++|+|++|. +..+|.. +++|+.|+|++|.+.+..+ +|+.|++..+...+.+|.....+.. +...|.
T Consensus 125 ~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~----~l~~L~~~~n~~~g~ip~~~~~l~~-~~~~C~ 196 (208)
T 2o6s_A 125 QLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNPWDCTCP----GIRYLSEWINKHSGVVRNSAGSVAP-DSAKCS 196 (208)
T ss_dssp TCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSCCBCCCTT----TTHHHHHHHHHCTTTBBCTTSSBCT-TCSBBT
T ss_pred cCCEEECCCCc-cceeCHHHhccCCCccEEEecCCCeecCCC----CHHHHHHHHHhCCceeeccCccccC-Cccccc
Confidence 89999999964 5566643 4789999999999888777 6889999998888889886655543 344454
No 55
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.00 E-value=8.5e-10 Score=120.73 Aligned_cols=143 Identities=15% Similarity=0.201 Sum_probs=77.5
Q ss_pred CccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc-cc--ccccEEEeecCCCCc--ccCCCCC---CccEEEe
Q 041335 192 SLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE-LP--LCLKSLDLMDCKILQ--SLPALPL---CLESLAL 263 (594)
Q Consensus 192 ~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i~--~~L~~L~L~~c~~l~--~lp~~~~---~L~~L~L 263 (594)
+|+.|++++|.+..++. +..+++|++|++++|.....+|. +. ++|+.|++++|.... .+|..+. +|++|+|
T Consensus 303 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L 381 (520)
T 2z7x_B 303 NIKNFTVSGTRMVHMLC-PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381 (520)
T ss_dssp CCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred ceeEEEcCCCccccccc-hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence 46666666666554431 24566666666666653333444 32 466666666665322 3333222 6666666
Q ss_pred eCCCCCCcCCCC----CCCccEEeeecCCCCCCchhhh-cccccccccccccccccCcc---cccccccccccccccCCC
Q 041335 264 TGCNMLRSIPEL----PLCLKYLNLEDCNMLRSLPELS-LCLQSLNARNCNRLRSLPEI---PSCLQELDASVLEKLSKP 335 (594)
Q Consensus 264 s~c~~l~~lp~~----~~~L~~L~Ls~c~~~~~L~~l~-~~L~~L~L~~c~~L~~lp~l---~~sL~~L~~~~c~~L~~~ 335 (594)
++|...+.+|.. +++|+.|+|++|.+.+.++... .+|+.|+|++| .++.+|.. .++|+.|++++| .++.+
T Consensus 382 s~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l 459 (520)
T 2z7x_B 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSV 459 (520)
T ss_dssp CSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCC
T ss_pred CCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCcc
Confidence 665544435532 3566666666666655444332 25666666664 34466653 455666666665 34444
Q ss_pred Cc
Q 041335 336 SL 337 (594)
Q Consensus 336 ~~ 337 (594)
+.
T Consensus 460 ~~ 461 (520)
T 2z7x_B 460 PD 461 (520)
T ss_dssp CT
T ss_pred CH
Confidence 43
No 56
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.99 E-value=3e-09 Score=105.11 Aligned_cols=136 Identities=26% Similarity=0.284 Sum_probs=94.1
Q ss_pred CCccEEEEeCCCCCccCc-cccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCCC-C---CccEE
Q 041335 191 SSLTGLHLSGNNFESLPA-SIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPALP-L---CLESL 261 (594)
Q Consensus 191 ~~L~~L~l~~~~l~~lP~-~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~~-~---~L~~L 261 (594)
++|+.|++++|.++.++. .|+++++|++|+|++|. +..++. +. ++|+.|++++|. +..+|... . +|++|
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCEE
Confidence 478899999998887654 68888999999999875 555554 33 688999998877 55565443 2 88899
Q ss_pred EeeCCCCCCcCCCC----CCCccEEeeecCCCCCCchhhh---cccccccccccccccccCc-c---ccccccccccccc
Q 041335 262 ALTGCNMLRSIPEL----PLCLKYLNLEDCNMLRSLPELS---LCLQSLNARNCNRLRSLPE-I---PSCLQELDASVLE 330 (594)
Q Consensus 262 ~Ls~c~~l~~lp~~----~~~L~~L~Ls~c~~~~~L~~l~---~~L~~L~L~~c~~L~~lp~-l---~~sL~~L~~~~c~ 330 (594)
+|++| .+..+|.. +++|+.|+|++|.+.+-.+... .+|+.|+|++| .++.+|. . .++|+.|++++++
T Consensus 113 ~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 113 YLGGN-QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp ECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred EcCCC-cCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence 99886 45566642 4788888998887765433211 27888888885 4455553 2 4556666666653
No 57
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.99 E-value=6.2e-10 Score=124.34 Aligned_cols=173 Identities=20% Similarity=0.182 Sum_probs=124.7
Q ss_pred CCCceecCCchhHHHHHhccCccceeeecccCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCccc-
Q 041335 156 PGKRSRLWDPKEIRRVLKQKRNCAVMEILQEIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPELP- 234 (594)
Q Consensus 156 ~~~~~~l~~~~~i~~vl~~~~~~~~i~~l~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~i~- 234 (594)
|.....++....+..++..+.+...+.-...+..|++|+.|++++|.++.+| .++.+++|+.|+|++|. +..+|.+.
T Consensus 8 p~~i~~ifpd~~l~~l~~l~l~~~~i~~~~~~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~l~~ 85 (605)
T 1m9s_A 8 STPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKPLTN 85 (605)
T ss_dssp CEEHHHHCCSHHHHHHHHHHTTCSCTTSEECHHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGGGGG
T ss_pred CCCHHHHCCcHHHHHHHHHhccCCCcccccchhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-CCCChhhcc
Confidence 4444445544555555554444333332234667889999999999999997 68999999999999876 67777643
Q ss_pred -ccccEEEeecCCCCcccCCCCC--CccEEEeeCCCCCCcCCC--CCCCccEEeeecCCCCCCchhhh--cccccccccc
Q 041335 235 -LCLKSLDLMDCKILQSLPALPL--CLESLALTGCNMLRSIPE--LPLCLKYLNLEDCNMLRSLPELS--LCLQSLNARN 307 (594)
Q Consensus 235 -~~L~~L~L~~c~~l~~lp~~~~--~L~~L~Ls~c~~l~~lp~--~~~~L~~L~Ls~c~~~~~L~~l~--~~L~~L~L~~ 307 (594)
++|+.|+|++|. +..+|.... +|+.|+|++|. +..+|. .+++|+.|+|++|.+.+. +.+. .+|+.|+|++
T Consensus 86 l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~ 162 (605)
T 1m9s_A 86 LKNLGWLFLDENK-IKDLSSLKDLKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLED 162 (605)
T ss_dssp CTTCCEEECCSSC-CCCCTTSTTCTTCCEEECTTSC-CCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCS
T ss_pred CCCCCEEECcCCC-CCCChhhccCCCCCEEEecCCC-CCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcC
Confidence 699999999986 666764322 89999999975 455653 358999999999988763 4332 2899999999
Q ss_pred cccccccCcc--cccccccccccccccCCC
Q 041335 308 CNRLRSLPEI--PSCLQELDASVLEKLSKP 335 (594)
Q Consensus 308 c~~L~~lp~l--~~sL~~L~~~~c~~L~~~ 335 (594)
|. +..++.+ +++|+.|++++|. ++.+
T Consensus 163 N~-l~~~~~l~~l~~L~~L~Ls~N~-i~~l 190 (605)
T 1m9s_A 163 NQ-ISDIVPLAGLTKLQNLYLSKNH-ISDL 190 (605)
T ss_dssp SC-CCCCGGGTTCTTCCEEECCSSC-CCBC
T ss_pred Cc-CCCchhhccCCCCCEEECcCCC-CCCC
Confidence 75 4555444 6789999998873 4444
No 58
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.99 E-value=2.6e-10 Score=116.64 Aligned_cols=147 Identities=20% Similarity=0.172 Sum_probs=91.5
Q ss_pred CCCCccEEEEeCCCCC-ccCccc--cCCCCCcEEEccCCCCCccCCc-cc-------ccccEEEeecCCCCcccCCCCC-
Q 041335 189 CLSSLTGLHLSGNNFE-SLPASI--KQLSQLSSLDLKDCKMLQSLPE-LP-------LCLKSLDLMDCKILQSLPALPL- 256 (594)
Q Consensus 189 ~L~~L~~L~l~~~~l~-~lP~~~--~~l~~L~~L~Ls~c~~l~~lP~-i~-------~~L~~L~L~~c~~l~~lp~~~~- 256 (594)
.+++|++|++++|.++ .+|..+ +.+++|++|+|++|. +..+|. +. ++|+.|++++|......|..+.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 5778888888888877 567765 778888888888765 444454 22 5788888887764333334444
Q ss_pred --CccEEEeeCCCCCCcC--C-----CCCCCccEEeeecCCCCC--Cchhhh----cccccccccccccccccC--cc--
Q 041335 257 --CLESLALTGCNMLRSI--P-----ELPLCLKYLNLEDCNMLR--SLPELS----LCLQSLNARNCNRLRSLP--EI-- 317 (594)
Q Consensus 257 --~L~~L~Ls~c~~l~~l--p-----~~~~~L~~L~Ls~c~~~~--~L~~l~----~~L~~L~L~~c~~L~~lp--~l-- 317 (594)
+|++|+|++|...+.+ | ..+++|+.|+|++|.+.+ .++... .+|+.|+|++|..-...| ..
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence 7788888877654431 1 345677888888777663 222111 267777777754333332 11
Q ss_pred cccccccccccccccCCCCc
Q 041335 318 PSCLQELDASVLEKLSKPSL 337 (594)
Q Consensus 318 ~~sL~~L~~~~c~~L~~~~~ 337 (594)
+++|+.|++++|. ++.+|.
T Consensus 252 l~~L~~L~Ls~N~-l~~ip~ 270 (312)
T 1wwl_A 252 PSQLNSLNLSFTG-LKQVPK 270 (312)
T ss_dssp CTTCCEEECTTSC-CSSCCS
T ss_pred cCCCCEEECCCCc-cChhhh
Confidence 4677777777764 345543
No 59
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=98.98 E-value=3.5e-09 Score=108.88 Aligned_cols=148 Identities=19% Similarity=0.190 Sum_probs=105.8
Q ss_pred cccCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCc--ccCCCCC-
Q 041335 184 LQEIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQ--SLPALPL- 256 (594)
Q Consensus 184 l~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~--~lp~~~~- 256 (594)
+..+..+++|++|++++|.++.+|..+. ++|++|++++|. +..++. +. ++|+.|++++|.... ..|..+.
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 169 (330)
T 1xku_A 93 PGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169 (330)
T ss_dssp TTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGG
T ss_pred HHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccC
Confidence 5678899999999999999999988765 789999999875 556654 33 689999999887432 3344433
Q ss_pred --CccEEEeeCCCCCCcCCCC-CCCccEEeeecCCCCCCchhhh---cccccccccccccccccCc-c---ccccccccc
Q 041335 257 --CLESLALTGCNMLRSIPEL-PLCLKYLNLEDCNMLRSLPELS---LCLQSLNARNCNRLRSLPE-I---PSCLQELDA 326 (594)
Q Consensus 257 --~L~~L~Ls~c~~l~~lp~~-~~~L~~L~Ls~c~~~~~L~~l~---~~L~~L~L~~c~~L~~lp~-l---~~sL~~L~~ 326 (594)
+|++|++++|. +..+|.. +++|+.|++++|.+.+..+... .+|+.|+|++|. ++.++. . .++|+.|++
T Consensus 170 l~~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L 247 (330)
T 1xku_A 170 MKKLSYIRIADTN-ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHL 247 (330)
T ss_dssp CTTCCEEECCSSC-CCSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEEC
T ss_pred CCCcCEEECCCCc-cccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEEC
Confidence 88999998854 5567754 4788999999888766433322 178888888864 444443 2 567888888
Q ss_pred ccccccCCCCc
Q 041335 327 SVLEKLSKPSL 337 (594)
Q Consensus 327 ~~c~~L~~~~~ 337 (594)
++| .++.++.
T Consensus 248 ~~N-~l~~lp~ 257 (330)
T 1xku_A 248 NNN-KLVKVPG 257 (330)
T ss_dssp CSS-CCSSCCT
T ss_pred CCC-cCccCCh
Confidence 887 3555554
No 60
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.98 E-value=4e-10 Score=122.81 Aligned_cols=104 Identities=19% Similarity=0.146 Sum_probs=50.0
Q ss_pred ccCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCcccccccEEEeecCCCCcccCCCCCCccEEEee
Q 041335 185 QEIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPELPLCLKSLDLMDCKILQSLPALPLCLESLALT 264 (594)
Q Consensus 185 ~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~i~~~L~~L~L~~c~~l~~lp~~~~~L~~L~Ls 264 (594)
+.+..+++|++|++++|.++.+++ ++.+++|++|+|++|. +..+|.. ++|+.|++++|......+..+.+|++|+|+
T Consensus 52 ~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~~-~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~ 128 (487)
T 3oja_A 52 ADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLVG-PSIETLHAANNNISRVSCSRGQGKKNIYLA 128 (487)
T ss_dssp GGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEEC-TTCCEEECCSSCCCCEEECCCSSCEEEECC
T ss_pred HHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCCC-CCcCEEECcCCcCCCCCccccCCCCEEECC
Confidence 355666666666666666665443 6666666666666553 4333321 345555555544222222222245555555
Q ss_pred CCCCCCcCCCC---CCCccEEeeecCCCCC
Q 041335 265 GCNMLRSIPEL---PLCLKYLNLEDCNMLR 291 (594)
Q Consensus 265 ~c~~l~~lp~~---~~~L~~L~Ls~c~~~~ 291 (594)
+|...+..|.. +++|+.|+|++|.+.+
T Consensus 129 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (487)
T 3oja_A 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (487)
T ss_dssp SSCCCSGGGBCGGGGSSEEEEECTTSCCCE
T ss_pred CCCCCCCCchhhcCCCCCCEEECCCCCCCC
Confidence 44333322221 2444555555554444
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.98 E-value=1.2e-09 Score=111.83 Aligned_cols=150 Identities=23% Similarity=0.239 Sum_probs=114.6
Q ss_pred ecccC--cCCCCccEEEEeCCCCCccCccccCC-----CCCcEEEccCCCCCccCC-c-cc--ccccEEEeecCCCCcc-
Q 041335 183 ILQEI--ACLSSLTGLHLSGNNFESLPASIKQL-----SQLSSLDLKDCKMLQSLP-E-LP--LCLKSLDLMDCKILQS- 250 (594)
Q Consensus 183 ~l~~l--~~L~~L~~L~l~~~~l~~lP~~~~~l-----~~L~~L~Ls~c~~l~~lP-~-i~--~~L~~L~L~~c~~l~~- 250 (594)
.+..+ ..+++|++|++++|.++.+|..++.+ ++|++|+|++|. +..+| . +. ++|+.|++++|...+.
T Consensus 111 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 189 (312)
T 1wwl_A 111 APPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDLSDNPELGER 189 (312)
T ss_dssp CCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEECCSCTTCHHH
T ss_pred hHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEECCCCCcCcch
Confidence 34454 88999999999999999889888877 999999999887 56665 4 54 6999999999986554
Q ss_pred -cCCC-----CCCccEEEeeCCCCCCcCCC-------CCCCccEEeeecCCCCCCch--hhh--cccccccccccccccc
Q 041335 251 -LPAL-----PLCLESLALTGCNMLRSIPE-------LPLCLKYLNLEDCNMLRSLP--ELS--LCLQSLNARNCNRLRS 313 (594)
Q Consensus 251 -lp~~-----~~~L~~L~Ls~c~~l~~lp~-------~~~~L~~L~Ls~c~~~~~L~--~l~--~~L~~L~L~~c~~L~~ 313 (594)
+|.. +.+|++|+|++|. +..+|. .+++|+.|+|++|.+.+..| ... .+|+.|+|++|. ++.
T Consensus 190 ~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ 267 (312)
T 1wwl_A 190 GLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQ 267 (312)
T ss_dssp HHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSS
T ss_pred HHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cCh
Confidence 2322 2399999999975 443332 34799999999999988553 221 389999999964 668
Q ss_pred cCcc-cccccccccccccccCCCC
Q 041335 314 LPEI-PSCLQELDASVLEKLSKPS 336 (594)
Q Consensus 314 lp~l-~~sL~~L~~~~c~~L~~~~ 336 (594)
+|.. +++|+.|+++++. ++.++
T Consensus 268 ip~~~~~~L~~L~Ls~N~-l~~~p 290 (312)
T 1wwl_A 268 VPKGLPAKLSVLDLSYNR-LDRNP 290 (312)
T ss_dssp CCSSCCSEEEEEECCSSC-CCSCC
T ss_pred hhhhccCCceEEECCCCC-CCCCh
Confidence 8875 4689999999874 45443
No 62
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=98.98 E-value=3e-10 Score=126.69 Aligned_cols=147 Identities=20% Similarity=0.110 Sum_probs=111.8
Q ss_pred cCcCCCCccEEEEeCCCCCcc---CccccCCCCCcEEEccCCCCCccCCc-cc--ccccEEEeecCCCCcccC-CCCC--
Q 041335 186 EIACLSSLTGLHLSGNNFESL---PASIKQLSQLSSLDLKDCKMLQSLPE-LP--LCLKSLDLMDCKILQSLP-ALPL-- 256 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~~l---P~~~~~l~~L~~L~Ls~c~~l~~lP~-i~--~~L~~L~L~~c~~l~~lp-~~~~-- 256 (594)
.+..+++|++|++++|.++.+ |..+..+++|++|++++|. +..+|. +. ++|+.|++++|......| ..+.
T Consensus 345 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 423 (606)
T 3vq2_A 345 KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423 (606)
T ss_dssp CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTC
T ss_pred hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeECCCCccCCccChhhhhcc
Confidence 566888999999999988865 7888999999999999876 666776 44 689999999988555545 2333
Q ss_pred -CccEEEeeCCCCCCcCCCC---CCCccEEeeecCCCCCC-chhhh---cccccccccccccccccCcc---cccccccc
Q 041335 257 -CLESLALTGCNMLRSIPEL---PLCLKYLNLEDCNMLRS-LPELS---LCLQSLNARNCNRLRSLPEI---PSCLQELD 325 (594)
Q Consensus 257 -~L~~L~Ls~c~~l~~lp~~---~~~L~~L~Ls~c~~~~~-L~~l~---~~L~~L~L~~c~~L~~lp~l---~~sL~~L~ 325 (594)
+|++|++++|...+..|.. +++|+.|++++|.+.+. +|... .+|+.|+|++|...+..|.. .++|+.|+
T Consensus 424 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 503 (606)
T 3vq2_A 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503 (606)
T ss_dssp TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred ccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEE
Confidence 8999999998876666654 47899999999988763 44322 28999999998655544543 57889999
Q ss_pred cccccccC
Q 041335 326 ASVLEKLS 333 (594)
Q Consensus 326 ~~~c~~L~ 333 (594)
+++|....
T Consensus 504 Ls~N~l~~ 511 (606)
T 3vq2_A 504 MSHNNLLF 511 (606)
T ss_dssp CCSSCCSC
T ss_pred CCCCcCCC
Confidence 98885433
No 63
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.98 E-value=2.2e-09 Score=108.78 Aligned_cols=141 Identities=28% Similarity=0.259 Sum_probs=104.0
Q ss_pred cccCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc-cc--ccccEEEeecCCCCcccCCC-CC---
Q 041335 184 LQEIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE-LP--LCLKSLDLMDCKILQSLPAL-PL--- 256 (594)
Q Consensus 184 l~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i~--~~L~~L~L~~c~~l~~lp~~-~~--- 256 (594)
+..+..+++|++|++++|.++.+|.. +.+++|++|+|++|. +..+|. +. ++|+.|++++|. +..+|.. +.
T Consensus 48 ~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~l~ 124 (290)
T 1p9a_G 48 LATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLG 124 (290)
T ss_dssp GGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTTTTCT
T ss_pred HHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCc-CcccCHHHHcCCC
Confidence 45788899999999999999988765 789999999999865 778887 43 689999999987 5666643 33
Q ss_pred CccEEEeeCCCCCCcCCC----CCCCccEEeeecCCCCCCchhhh---cccccccccccccccccCcc---ccccccccc
Q 041335 257 CLESLALTGCNMLRSIPE----LPLCLKYLNLEDCNMLRSLPELS---LCLQSLNARNCNRLRSLPEI---PSCLQELDA 326 (594)
Q Consensus 257 ~L~~L~Ls~c~~l~~lp~----~~~~L~~L~Ls~c~~~~~L~~l~---~~L~~L~L~~c~~L~~lp~l---~~sL~~L~~ 326 (594)
+|++|+|++| .+..+|. .+++|+.|+|++|.+.+-.+... .+|+.|+|++| .++.+|.. ..+|+.|++
T Consensus 125 ~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L 202 (290)
T 1p9a_G 125 ELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFL 202 (290)
T ss_dssp TCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEEC
T ss_pred CCCEEECCCC-CCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEe
Confidence 8999999986 4556664 24789999999988774322221 27889999884 56778765 334555655
Q ss_pred ccc
Q 041335 327 SVL 329 (594)
Q Consensus 327 ~~c 329 (594)
+++
T Consensus 203 ~~N 205 (290)
T 1p9a_G 203 HGN 205 (290)
T ss_dssp CSC
T ss_pred CCC
Confidence 554
No 64
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=98.97 E-value=3.8e-09 Score=114.14 Aligned_cols=148 Identities=19% Similarity=0.121 Sum_probs=78.2
Q ss_pred CcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc-ccccccEEEeecCCCCcccCCC-----------
Q 041335 187 IACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE-LPLCLKSLDLMDCKILQSLPAL----------- 254 (594)
Q Consensus 187 l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i~~~L~~L~L~~c~~l~~lp~~----------- 254 (594)
+..+++|++|++++|.++.+| ++.+++|++|++++|..++.++- -.++|+.|++++|. +..+|-.
T Consensus 123 ~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~-l~~l~l~~l~~L~~L~l~ 199 (457)
T 3bz5_A 123 VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNK-ITELDVSQNKLLNRLNCD 199 (457)
T ss_dssp CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSC-CCCCCCTTCTTCCEEECC
T ss_pred CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCc-cceeccccCCCCCEEECc
Confidence 455556666666666555553 45555555555555544444422 11355555555543 3333311
Q ss_pred --------CC---CccEEEeeCCCCCCcCC-CCCCCccEEeeecCCCCCCc----hhhh---c---cccccccccccccc
Q 041335 255 --------PL---CLESLALTGCNMLRSIP-ELPLCLKYLNLEDCNMLRSL----PELS---L---CLQSLNARNCNRLR 312 (594)
Q Consensus 255 --------~~---~L~~L~Ls~c~~l~~lp-~~~~~L~~L~Ls~c~~~~~L----~~l~---~---~L~~L~L~~c~~L~ 312 (594)
+. +|++|++++|. +..+| ..+++|+.|++++|.+.+.. +.+. . +|+.|++++|+.++
T Consensus 200 ~N~l~~~~l~~l~~L~~L~Ls~N~-l~~ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~ 278 (457)
T 3bz5_A 200 TNNITKLDLNQNIQLTFLDCSSNK-LTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLI 278 (457)
T ss_dssp SSCCSCCCCTTCTTCSEEECCSSC-CSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCC
T ss_pred CCcCCeeccccCCCCCEEECcCCc-ccccCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCC
Confidence 11 44555555532 23344 12356666666666655421 1111 0 46667777777666
Q ss_pred ccCcc-cccccccccccccccCCCCcc
Q 041335 313 SLPEI-PSCLQELDASVLEKLSKPSLD 338 (594)
Q Consensus 313 ~lp~l-~~sL~~L~~~~c~~L~~~~~~ 338 (594)
.+|.. .++|+.|++++|..++.++..
T Consensus 279 ~~~~~~l~~L~~L~Ls~n~~l~~l~~~ 305 (457)
T 3bz5_A 279 YFQAEGCRKIKELDVTHNTQLYLLDCQ 305 (457)
T ss_dssp EEECTTCTTCCCCCCTTCTTCCEEECT
T ss_pred cccccccccCCEEECCCCcccceeccC
Confidence 66643 577888888888777666543
No 65
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.97 E-value=3.2e-09 Score=111.85 Aligned_cols=80 Identities=21% Similarity=0.264 Sum_probs=42.8
Q ss_pred cCcCCCCccEEEEeCCCCCccCc-cccCCCCCcEEEccCCCCCccCCc-c-c--ccccEEEeecCCCCcccCCCCC---C
Q 041335 186 EIACLSSLTGLHLSGNNFESLPA-SIKQLSQLSSLDLKDCKMLQSLPE-L-P--LCLKSLDLMDCKILQSLPALPL---C 257 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~~lP~-~~~~l~~L~~L~Ls~c~~l~~lP~-i-~--~~L~~L~L~~c~~l~~lp~~~~---~ 257 (594)
.+..+++|++|++++|.++.+|+ .|+.+++|++|+|++|. +..+|. + . ++|+.|++++|......|..+. +
T Consensus 88 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 166 (390)
T 3o6n_A 88 AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTS 166 (390)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTT
T ss_pred hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCC
Confidence 45556666666666666665533 35666666666666543 455554 2 2 4566666666553222222232 5
Q ss_pred ccEEEeeCC
Q 041335 258 LESLALTGC 266 (594)
Q Consensus 258 L~~L~Ls~c 266 (594)
|++|++++|
T Consensus 167 L~~L~l~~n 175 (390)
T 3o6n_A 167 LQNLQLSSN 175 (390)
T ss_dssp CCEEECCSS
T ss_pred CCEEECCCC
Confidence 666666654
No 66
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=98.96 E-value=3.4e-09 Score=109.13 Aligned_cols=148 Identities=21% Similarity=0.253 Sum_probs=107.2
Q ss_pred cccCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCC--cccCCCCC-
Q 041335 184 LQEIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKIL--QSLPALPL- 256 (594)
Q Consensus 184 l~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l--~~lp~~~~- 256 (594)
+..+..+++|++|++++|.++.+|..+. ++|++|++++|. +..+|. +. ++|+.|++++|... ...|..+.
T Consensus 95 ~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~ 171 (332)
T 2ft3_A 95 EKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171 (332)
T ss_dssp GGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCS
T ss_pred HhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCCEEECCCCccccCCCCcccccC
Confidence 5678899999999999999999998775 899999999875 667765 43 68999999998742 23444444
Q ss_pred -CccEEEeeCCCCCCcCCCC-CCCccEEeeecCCCCCCchhhh---cccccccccccccccccCc-c---cccccccccc
Q 041335 257 -CLESLALTGCNMLRSIPEL-PLCLKYLNLEDCNMLRSLPELS---LCLQSLNARNCNRLRSLPE-I---PSCLQELDAS 327 (594)
Q Consensus 257 -~L~~L~Ls~c~~l~~lp~~-~~~L~~L~Ls~c~~~~~L~~l~---~~L~~L~L~~c~~L~~lp~-l---~~sL~~L~~~ 327 (594)
+|++|++++|. +..+|.. +++|+.|+|++|.+.+..+... .+|+.|+|++|. ++.++. . +++|+.|+++
T Consensus 172 l~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~ 249 (332)
T 2ft3_A 172 LKLNYLRISEAK-LTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLD 249 (332)
T ss_dssp CCCSCCBCCSSB-CSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECC
T ss_pred CccCEEECcCCC-CCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECC
Confidence 78889998854 5567754 3688899998888776443211 178888888854 444543 2 5678888888
Q ss_pred cccccCCCCc
Q 041335 328 VLEKLSKPSL 337 (594)
Q Consensus 328 ~c~~L~~~~~ 337 (594)
+| .++.++.
T Consensus 250 ~N-~l~~lp~ 258 (332)
T 2ft3_A 250 NN-KLSRVPA 258 (332)
T ss_dssp SS-CCCBCCT
T ss_pred CC-cCeecCh
Confidence 77 3445554
No 67
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.96 E-value=2.3e-09 Score=110.79 Aligned_cols=141 Identities=22% Similarity=0.287 Sum_probs=98.6
Q ss_pred ccCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCccc--ccccEEEeecCCCCcccCCCCC--CccE
Q 041335 185 QEIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPELP--LCLKSLDLMDCKILQSLPALPL--CLES 260 (594)
Q Consensus 185 ~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~i~--~~L~~L~L~~c~~l~~lp~~~~--~L~~ 260 (594)
+++..+++|++|++++|.++.+|. +..+++|++|++++|. +..+|.+. ++|+.|++++|. +..+|.... +|++
T Consensus 60 ~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~-i~~~~~~~~l~~L~~L~l~~n~-i~~~~~~~~l~~L~~ 136 (347)
T 4fmz_A 60 QGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNK-ITDISALQNLTNLRELYLNEDN-ISDISPLANLTKMYS 136 (347)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGGGTTCTTCSEEECTTSC-CCCCGGGTTCTTCCE
T ss_pred hhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCc-ccCchHHcCCCcCCEEECcCCc-ccCchhhccCCceeE
Confidence 457778888888888888888876 8888888888888774 66677643 688888888876 555555222 7888
Q ss_pred EEeeCCCCCCcCCC--CCCCccEEeeecCCCCCCchhh-hcccccccccccccccccCcc--cccccccccccc
Q 041335 261 LALTGCNMLRSIPE--LPLCLKYLNLEDCNMLRSLPEL-SLCLQSLNARNCNRLRSLPEI--PSCLQELDASVL 329 (594)
Q Consensus 261 L~Ls~c~~l~~lp~--~~~~L~~L~Ls~c~~~~~L~~l-~~~L~~L~L~~c~~L~~lp~l--~~sL~~L~~~~c 329 (594)
|++++|..+..++. .+++|+.|++++|.+.+..+.. ..+|+.|++++|. ++.++.. +++|+.|++++|
T Consensus 137 L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n 209 (347)
T 4fmz_A 137 LNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQ-IEDISPLASLTSLHYFTAYVN 209 (347)
T ss_dssp EECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSC-CCCCGGGGGCTTCCEEECCSS
T ss_pred EECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCc-ccccccccCCCccceeecccC
Confidence 88888877776664 3477888888888766533211 1167788887753 4555543 456666666665
No 68
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.96 E-value=3.5e-09 Score=118.11 Aligned_cols=145 Identities=22% Similarity=0.127 Sum_probs=104.7
Q ss_pred cCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccC-Cc-cc--ccccEEEeecCCCCcccCCC-CC---C
Q 041335 186 EIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSL-PE-LP--LCLKSLDLMDCKILQSLPAL-PL---C 257 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~l-P~-i~--~~L~~L~L~~c~~l~~lp~~-~~---~ 257 (594)
.+..+++|++|++++|.++.+|..++.+++|++|++++|. +..+ |. +. ++|+.|++++|.....+|.. +. +
T Consensus 273 ~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~ 351 (606)
T 3t6q_A 273 TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351 (606)
T ss_dssp TTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCC-CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTT
T ss_pred HhccccCCCEEeccCCccCCCChhhcccccCCEEECccCC-cCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCc
Confidence 4778889999999999999999999999999999999876 4444 43 33 68999999998866677665 33 8
Q ss_pred ccEEEeeCCCCCCcC--CC---CCCCccEEeeecCCCCCCchhhh---cccccccccccccccccCcc----cccccccc
Q 041335 258 LESLALTGCNMLRSI--PE---LPLCLKYLNLEDCNMLRSLPELS---LCLQSLNARNCNRLRSLPEI----PSCLQELD 325 (594)
Q Consensus 258 L~~L~Ls~c~~l~~l--p~---~~~~L~~L~Ls~c~~~~~L~~l~---~~L~~L~L~~c~~L~~lp~l----~~sL~~L~ 325 (594)
|++|++++|...+.. |. .+++|+.|++++|.+.+..+... .+|+.|++++|......|.. +++|+.|+
T Consensus 352 L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 352 LRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp CCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred CCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 889999887554332 32 34778888888887765444322 26888888887655444432 56788888
Q ss_pred cccccc
Q 041335 326 ASVLEK 331 (594)
Q Consensus 326 ~~~c~~ 331 (594)
+++|..
T Consensus 432 l~~n~l 437 (606)
T 3t6q_A 432 LSHSLL 437 (606)
T ss_dssp CTTCCC
T ss_pred CCCCcc
Confidence 877754
No 69
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.95 E-value=1.9e-09 Score=118.58 Aligned_cols=143 Identities=22% Similarity=0.262 Sum_probs=117.2
Q ss_pred cCcCCCCccEEEEeCCCCCccC---ccccCCCCCcEEEccCCCCCccCCc-cc--ccccEEEeecCCCCcccCCCCC-Cc
Q 041335 186 EIACLSSLTGLHLSGNNFESLP---ASIKQLSQLSSLDLKDCKMLQSLPE-LP--LCLKSLDLMDCKILQSLPALPL-CL 258 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~~lP---~~~~~l~~L~~L~Ls~c~~l~~lP~-i~--~~L~~L~L~~c~~l~~lp~~~~-~L 258 (594)
.++.+++|++|++++|.++.+| ..++.+++|++|+|++|. +..+|. +. ++|+.|++++|. +..+|..+. +|
T Consensus 356 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~L~Ls~N~-l~~l~~~~~~~L 433 (549)
T 2z81_A 356 CKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTG-IRVVKTCIPQTL 433 (549)
T ss_dssp CTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCCTTCCEEECTTSC-CSCCCTTSCTTC
T ss_pred hhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC-CccCChhhcccccccEEECCCCC-cccccchhcCCc
Confidence 4778999999999999999886 358999999999999985 778887 43 699999999987 777887776 99
Q ss_pred cEEEeeCCCCCCcCCCCCCCccEEeeecCCCCCCchhhh--cccccccccccccccccCc-c---ccccccccccccccc
Q 041335 259 ESLALTGCNMLRSIPELPLCLKYLNLEDCNMLRSLPELS--LCLQSLNARNCNRLRSLPE-I---PSCLQELDASVLEKL 332 (594)
Q Consensus 259 ~~L~Ls~c~~l~~lp~~~~~L~~L~Ls~c~~~~~L~~l~--~~L~~L~L~~c~~L~~lp~-l---~~sL~~L~~~~c~~L 332 (594)
++|+|++| .+..++..+++|+.|+|++|.+. .+|... .+|+.|+|++|+ ++.+|. . .++|+.|++++|+-.
T Consensus 434 ~~L~Ls~N-~l~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 434 EVLDVSNN-NLDSFSLFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp SEEECCSS-CCSCCCCCCTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCSSC-CCCCCTTGGGGCTTCCEEECCSSCBC
T ss_pred eEEECCCC-ChhhhcccCChhcEEECCCCccC-cCCCcccCccCCEEecCCCc-cCCcCHHHHhcCcccCEEEecCCCcc
Confidence 99999997 56667778899999999999887 676532 289999999975 455543 2 578899999988754
Q ss_pred C
Q 041335 333 S 333 (594)
Q Consensus 333 ~ 333 (594)
.
T Consensus 511 ~ 511 (549)
T 2z81_A 511 C 511 (549)
T ss_dssp C
T ss_pred C
Confidence 3
No 70
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.95 E-value=6.3e-10 Score=127.11 Aligned_cols=141 Identities=21% Similarity=0.163 Sum_probs=105.3
Q ss_pred ecccCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc-cc--ccccEEEeecCCCCcccCCCCC---
Q 041335 183 ILQEIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE-LP--LCLKSLDLMDCKILQSLPALPL--- 256 (594)
Q Consensus 183 ~l~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i~--~~L~~L~L~~c~~l~~lp~~~~--- 256 (594)
.++.+..++.|+.|++++|.+..+|..+..+++|++|+|++|. +..+|. +. ++|+.|+|++|. +..+|..++
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~ 293 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCF 293 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGT
T ss_pred ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCC
Confidence 3456888999999999999999999999999999999999876 678998 65 699999999988 669999887
Q ss_pred CccEEEeeCCCCCCcCCCCC---CCccEEeeecCCCCCCchhhhc----ccccccccccccccccCcccccccccccccc
Q 041335 257 CLESLALTGCNMLRSIPELP---LCLKYLNLEDCNMLRSLPELSL----CLQSLNARNCNRLRSLPEIPSCLQELDASVL 329 (594)
Q Consensus 257 ~L~~L~Ls~c~~l~~lp~~~---~~L~~L~Ls~c~~~~~L~~l~~----~L~~L~L~~c~~L~~lp~l~~sL~~L~~~~c 329 (594)
+|++|+|++| .++.+|..+ ++|+.|+|++|.+.+.+|.... .+..|+|+++.....+ |..|+.|+++++
T Consensus 294 ~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~---p~~l~~l~l~~n 369 (727)
T 4b8c_D 294 QLKYFYFFDN-MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPL---PHERRFIEINTD 369 (727)
T ss_dssp TCSEEECCSS-CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCC---CCC---------
T ss_pred CCCEEECCCC-CCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcC---ccccceeEeecc
Confidence 8999999996 567899754 7899999999999998776542 2334678886665544 446667777655
No 71
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.94 E-value=1.6e-09 Score=102.96 Aligned_cols=122 Identities=18% Similarity=0.108 Sum_probs=96.3
Q ss_pred cCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc-cc--ccccEEEeecCCCCcccCCCCC---Ccc
Q 041335 186 EIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE-LP--LCLKSLDLMDCKILQSLPALPL---CLE 259 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i~--~~L~~L~L~~c~~l~~lp~~~~---~L~ 259 (594)
++..+++|++|++++|.++.++ .++.+++|++|++++|..-...|. +. ++|+.|++++|......|..+. +|+
T Consensus 61 ~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~ 139 (197)
T 4ezg_A 61 GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139 (197)
T ss_dssp TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCC
T ss_pred HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCC
Confidence 7888999999999999887765 789999999999999874443455 54 6999999999986555565554 899
Q ss_pred EEEeeCCCCCCcCCC--CCCCccEEeeecCCCCCCchhhh--cccccccccccc
Q 041335 260 SLALTGCNMLRSIPE--LPLCLKYLNLEDCNMLRSLPELS--LCLQSLNARNCN 309 (594)
Q Consensus 260 ~L~Ls~c~~l~~lp~--~~~~L~~L~Ls~c~~~~~L~~l~--~~L~~L~L~~c~ 309 (594)
+|+|++|..++.+|. .+++|+.|++++|.+.+ ++.+. .+|+.|++++++
T Consensus 140 ~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~-~~~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 140 SIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD-YRGIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCC-CTTGGGCSSCCEEEECBC-
T ss_pred EEEccCCCCccccHhhcCCCCCCEEECCCCCCcC-hHHhccCCCCCEEEeeCcc
Confidence 999999887888874 35889999999998876 33222 278999998854
No 72
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.94 E-value=6.7e-10 Score=113.45 Aligned_cols=144 Identities=23% Similarity=0.218 Sum_probs=96.0
Q ss_pred cCCCCccEEEEeCCCCCcc-C----ccccCCCCCcEEEccCCCCCccCC-c-cc--ccccEEEeecCCCCcc--cCCC--
Q 041335 188 ACLSSLTGLHLSGNNFESL-P----ASIKQLSQLSSLDLKDCKMLQSLP-E-LP--LCLKSLDLMDCKILQS--LPAL-- 254 (594)
Q Consensus 188 ~~L~~L~~L~l~~~~l~~l-P----~~~~~l~~L~~L~Ls~c~~l~~lP-~-i~--~~L~~L~L~~c~~l~~--lp~~-- 254 (594)
..+++|++|++++|.++.. | ..+..+++|++|+|++|. +..+| . +. ++|+.|++++|...+. ++..
T Consensus 114 ~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 192 (310)
T 4glp_A 114 ATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALC 192 (310)
T ss_dssp CCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSC
T ss_pred ccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHh
Confidence 6778888888888887742 2 334568888888888776 44444 3 33 5888888888874431 2211
Q ss_pred ---CCCccEEEeeCCCCCCcCCC-------CCCCccEEeeecCCCCCCchh----hh--cccccccccccccccccCcc-
Q 041335 255 ---PLCLESLALTGCNMLRSIPE-------LPLCLKYLNLEDCNMLRSLPE----LS--LCLQSLNARNCNRLRSLPEI- 317 (594)
Q Consensus 255 ---~~~L~~L~Ls~c~~l~~lp~-------~~~~L~~L~Ls~c~~~~~L~~----l~--~~L~~L~L~~c~~L~~lp~l- 317 (594)
+.+|++|+|++|. ++.+|. .+++|+.|+|++|.+.+..|. +. .+|+.|+|++| .++.+|..
T Consensus 193 ~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~ 270 (310)
T 4glp_A 193 PHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGL 270 (310)
T ss_dssp TTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCC
T ss_pred hhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhh
Confidence 2278888888864 444443 237888888888888776442 11 27888888875 45577764
Q ss_pred cccccccccccccccCCC
Q 041335 318 PSCLQELDASVLEKLSKP 335 (594)
Q Consensus 318 ~~sL~~L~~~~c~~L~~~ 335 (594)
+++|+.|++++|. ++.+
T Consensus 271 ~~~L~~L~Ls~N~-l~~~ 287 (310)
T 4glp_A 271 PAKLRVLDLSSNR-LNRA 287 (310)
T ss_dssp CSCCSCEECCSCC-CCSC
T ss_pred cCCCCEEECCCCc-CCCC
Confidence 6788888887764 4443
No 73
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.94 E-value=4.2e-09 Score=102.77 Aligned_cols=98 Identities=27% Similarity=0.292 Sum_probs=71.7
Q ss_pred CCccEEEEeCCCCCcc-CccccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCCC-C---CccEE
Q 041335 191 SSLTGLHLSGNNFESL-PASIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPALP-L---CLESL 261 (594)
Q Consensus 191 ~~L~~L~l~~~~l~~l-P~~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~~-~---~L~~L 261 (594)
++|++|++++|.++.+ |..|..+++|++|+|++|. +..+|. +. ++|+.|+|++|. +..+|... . +|++|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCc-CCccChhHhCcchhhCeE
Confidence 5888999999888876 5678888899999998766 677775 33 588888888875 56666543 2 78888
Q ss_pred EeeCCCCCCcCCCC---CCCccEEeeecCCCCC
Q 041335 262 ALTGCNMLRSIPEL---PLCLKYLNLEDCNMLR 291 (594)
Q Consensus 262 ~Ls~c~~l~~lp~~---~~~L~~L~Ls~c~~~~ 291 (594)
+|++| .+..+|.. +++|+.|+|++|.+.+
T Consensus 118 ~Ls~N-~l~~lp~~~~~l~~L~~L~L~~N~l~~ 149 (229)
T 3e6j_A 118 FMCCN-KLTELPRGIERLTHLTHLALDQNQLKS 149 (229)
T ss_dssp ECCSS-CCCSCCTTGGGCTTCSEEECCSSCCCC
T ss_pred eccCC-cccccCcccccCCCCCEEECCCCcCCc
Confidence 88875 45577754 3667777777776553
No 74
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.94 E-value=4.6e-09 Score=103.76 Aligned_cols=125 Identities=28% Similarity=0.249 Sum_probs=99.0
Q ss_pred ccCcCCCCccEEEEeCCCCCccCc-cccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCCC-C--
Q 041335 185 QEIACLSSLTGLHLSGNNFESLPA-SIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPALP-L-- 256 (594)
Q Consensus 185 ~~l~~L~~L~~L~l~~~~l~~lP~-~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~~-~-- 256 (594)
..+..+++|++|++++|.++.+++ .|..+++|++|+|++|. +..+|. +. ++|+.|+|++|. +..+|... .
T Consensus 53 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l 130 (251)
T 3m19_A 53 ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVFDRL 130 (251)
T ss_dssp TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTC
T ss_pred hHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCCc-CCCcChhHhccC
Confidence 368889999999999999997765 58999999999999876 667765 33 699999999986 66777654 2
Q ss_pred -CccEEEeeCCCCCCcCCC----CCCCccEEeeecCCCCCCchhhh---ccccccccccccccc
Q 041335 257 -CLESLALTGCNMLRSIPE----LPLCLKYLNLEDCNMLRSLPELS---LCLQSLNARNCNRLR 312 (594)
Q Consensus 257 -~L~~L~Ls~c~~l~~lp~----~~~~L~~L~Ls~c~~~~~L~~l~---~~L~~L~L~~c~~L~ 312 (594)
+|++|+|++| .+..+|. .+++|+.|+|++|.+.+-.+... .+|+.|+|++|+.-.
T Consensus 131 ~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 131 TKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred CcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 8999999996 5666665 24789999999998886444222 279999999976543
No 75
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.93 E-value=2.9e-09 Score=110.78 Aligned_cols=149 Identities=24% Similarity=0.224 Sum_probs=103.2
Q ss_pred cCcCCCCccE-EEEeCCCCCccC-ccccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCCCC---
Q 041335 186 EIACLSSLTG-LHLSGNNFESLP-ASIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPALPL--- 256 (594)
Q Consensus 186 ~l~~L~~L~~-L~l~~~~l~~lP-~~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~~~--- 256 (594)
.|..+++|+. +.+.+|+++.+| ..|..+++|++|++++|. +..+|. +. .++..|++.++..+..+|....
T Consensus 74 ~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~ 152 (350)
T 4ay9_X 74 VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGL 152 (350)
T ss_dssp SBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEEC-CSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTS
T ss_pred HhhcchhhhhhhcccCCcccccCchhhhhccccccccccccc-cccCCchhhcccchhhhhhhccccccccccccchhhc
Confidence 4567776554 556667788774 567888888888888764 666665 22 3677788877777777776532
Q ss_pred --CccEEEeeCCCCCCcCCCCC---CCccEEeeecCCCCCCchhhh----cccccccccccccccccCcc-ccccccccc
Q 041335 257 --CLESLALTGCNMLRSIPELP---LCLKYLNLEDCNMLRSLPELS----LCLQSLNARNCNRLRSLPEI-PSCLQELDA 326 (594)
Q Consensus 257 --~L~~L~Ls~c~~l~~lp~~~---~~L~~L~Ls~c~~~~~L~~l~----~~L~~L~L~~c~~L~~lp~l-~~sL~~L~~ 326 (594)
.|+.|+|++ +.++.+|... .+|+.|++++++.++.+|.-. .+|+.|+|++| .++++|.. +.+|+.|.+
T Consensus 153 ~~~l~~L~L~~-N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~ 230 (350)
T 4ay9_X 153 SFESVILWLNK-NGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRA 230 (350)
T ss_dssp BSSCEEEECCS-SCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEEC
T ss_pred chhhhhhcccc-ccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhh
Confidence 577788877 4456676543 567888888777777776522 27888888874 57777764 677888888
Q ss_pred ccccccCCCCc
Q 041335 327 SVLEKLSKPSL 337 (594)
Q Consensus 327 ~~c~~L~~~~~ 337 (594)
.+|..|+.+|.
T Consensus 231 l~~~~l~~lP~ 241 (350)
T 4ay9_X 231 RSTYNLKKLPT 241 (350)
T ss_dssp TTCTTCCCCCC
T ss_pred ccCCCcCcCCC
Confidence 88887777774
No 76
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.93 E-value=1.6e-09 Score=116.26 Aligned_cols=83 Identities=30% Similarity=0.319 Sum_probs=40.4
Q ss_pred cCcCCCCccEEEEeCCCCCcc-CccccCCCCCcEEEccCCCCCccCCc---cc--ccccEEEeecCCCCcccCCC-CC--
Q 041335 186 EIACLSSLTGLHLSGNNFESL-PASIKQLSQLSSLDLKDCKMLQSLPE---LP--LCLKSLDLMDCKILQSLPAL-PL-- 256 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~~l-P~~~~~l~~L~~L~Ls~c~~l~~lP~---i~--~~L~~L~L~~c~~l~~lp~~-~~-- 256 (594)
.+..+++|++|++++|.++.+ |..|+++++|++|+|++|.....+|. +. ++|+.|++++|......|.. +.
T Consensus 74 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l 153 (455)
T 3v47_A 74 TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNM 153 (455)
T ss_dssp TTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGC
T ss_pred cccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCC
Confidence 355555555555555555543 44555555555555555542222221 22 35555555555533333433 21
Q ss_pred -CccEEEeeCCCC
Q 041335 257 -CLESLALTGCNM 268 (594)
Q Consensus 257 -~L~~L~Ls~c~~ 268 (594)
+|++|+|++|..
T Consensus 154 ~~L~~L~L~~n~l 166 (455)
T 3v47_A 154 RRFHVLDLTFNKV 166 (455)
T ss_dssp TTCCEEECTTCCB
T ss_pred CcccEEeCCCCcc
Confidence 555555555443
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.93 E-value=1.9e-09 Score=107.96 Aligned_cols=142 Identities=27% Similarity=0.269 Sum_probs=106.5
Q ss_pred ccCcCCCCccEEEEeCCCCCccC-ccccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCc-ccCCCCC--
Q 041335 185 QEIACLSSLTGLHLSGNNFESLP-ASIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQ-SLPALPL-- 256 (594)
Q Consensus 185 ~~l~~L~~L~~L~l~~~~l~~lP-~~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~-~lp~~~~-- 256 (594)
..+..+++|++|++++|.++.+| ..|.++++|++|++++|. +..++. +. ++|+.|++++|.... .+|..+.
T Consensus 70 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l 148 (276)
T 2z62_A 70 GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148 (276)
T ss_dssp TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC
T ss_pred HHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCC-ccccCchhcccCCCCCEEECcCCccceecCchhhccC
Confidence 36888999999999999999776 679999999999999876 666655 43 699999999987433 3677666
Q ss_pred -CccEEEeeCCCCCCcCC-CCC---CCcc----EEeeecCCCCCCchhhh--cccccccccccccccccCcc----cccc
Q 041335 257 -CLESLALTGCNMLRSIP-ELP---LCLK----YLNLEDCNMLRSLPELS--LCLQSLNARNCNRLRSLPEI----PSCL 321 (594)
Q Consensus 257 -~L~~L~Ls~c~~l~~lp-~~~---~~L~----~L~Ls~c~~~~~L~~l~--~~L~~L~L~~c~~L~~lp~l----~~sL 321 (594)
+|++|+|++|. +..++ ..+ .+|+ .|++++|.+.+-.+... .+|+.|+|++|. ++.+|.. .++|
T Consensus 149 ~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L 226 (276)
T 2z62_A 149 TNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSL 226 (276)
T ss_dssp TTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSC-CSCCCTTTTTTCCSC
T ss_pred CCCCEEECCCCC-CCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCc-eeecCHhHhcccccc
Confidence 89999999975 44454 332 4455 89999998875333222 179999999965 6777653 4567
Q ss_pred cccccccc
Q 041335 322 QELDASVL 329 (594)
Q Consensus 322 ~~L~~~~c 329 (594)
+.|+++++
T Consensus 227 ~~L~l~~N 234 (276)
T 2z62_A 227 QKIWLHTN 234 (276)
T ss_dssp CEEECCSS
T ss_pred cEEEccCC
Confidence 77777665
No 78
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.93 E-value=2.2e-09 Score=111.03 Aligned_cols=141 Identities=23% Similarity=0.182 Sum_probs=106.3
Q ss_pred cCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCccc--ccccEEEeecCCCCcccCCCCC--CccEE
Q 041335 186 EIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPELP--LCLKSLDLMDCKILQSLPALPL--CLESL 261 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~i~--~~L~~L~L~~c~~l~~lp~~~~--~L~~L 261 (594)
.+..+++|++|++++|.++.++. +..+++|+.|++++|. +..++.+. ++|+.|++++|. +..+|.... +|++|
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L 248 (347)
T 4fmz_A 172 PIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQ-ITDITPVANMTRLNSLKIGNNK-ITDLSPLANLSQLTWL 248 (347)
T ss_dssp GGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEE
T ss_pred hhccCCCCCEEEccCCccccccc-ccCCCccceeecccCC-CCCCchhhcCCcCCEEEccCCc-cCCCcchhcCCCCCEE
Confidence 47788999999999999998876 8899999999999875 55665533 689999999987 555554222 89999
Q ss_pred EeeCCCCCCcCCC--CCCCccEEeeecCCCCCCchhhh--cccccccccccccccccCcc---cccccccccccccc
Q 041335 262 ALTGCNMLRSIPE--LPLCLKYLNLEDCNMLRSLPELS--LCLQSLNARNCNRLRSLPEI---PSCLQELDASVLEK 331 (594)
Q Consensus 262 ~Ls~c~~l~~lp~--~~~~L~~L~Ls~c~~~~~L~~l~--~~L~~L~L~~c~~L~~lp~l---~~sL~~L~~~~c~~ 331 (594)
++++| .+..++. .+++|+.|++++|.+.+ ++.+. .+|+.|++++|+.....|.. .++|+.|++++|..
T Consensus 249 ~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l 323 (347)
T 4fmz_A 249 EIGTN-QISDINAVKDLTKLKMLNVGSNQISD-ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323 (347)
T ss_dssp ECCSS-CCCCCGGGTTCTTCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC
T ss_pred ECCCC-ccCCChhHhcCCCcCEEEccCCccCC-ChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc
Confidence 99997 4455552 45789999999997765 34332 27999999998654444442 57899999999873
No 79
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.92 E-value=1.8e-09 Score=115.93 Aligned_cols=139 Identities=22% Similarity=0.138 Sum_probs=76.1
Q ss_pred CccEEEEeCCCCCcc-CccccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCCCC---CccEEEe
Q 041335 192 SLTGLHLSGNNFESL-PASIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPALPL---CLESLAL 263 (594)
Q Consensus 192 ~L~~L~l~~~~l~~l-P~~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~~~---~L~~L~L 263 (594)
+|++|++++|.++.+ |..|+++++|++|+|++|.....+|. +. ++|++|++++|......|..+. +|++|+|
T Consensus 31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 110 (455)
T 3v47_A 31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL 110 (455)
T ss_dssp TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEEC
T ss_pred ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeC
Confidence 666667766666655 55666666677777666654444433 33 4666666666664444455444 6666666
Q ss_pred eCCCCCCcCCC-----CCCCccEEeeecCCCCCCchhh-h---cccccccccccccccccCccc-----ccccccccccc
Q 041335 264 TGCNMLRSIPE-----LPLCLKYLNLEDCNMLRSLPEL-S---LCLQSLNARNCNRLRSLPEIP-----SCLQELDASVL 329 (594)
Q Consensus 264 s~c~~l~~lp~-----~~~~L~~L~Ls~c~~~~~L~~l-~---~~L~~L~L~~c~~L~~lp~l~-----~sL~~L~~~~c 329 (594)
++|...+.+|. .+++|+.|+|++|.+.+..|.. . .+|+.|++++|......|... .+|+.|+++++
T Consensus 111 ~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n 190 (455)
T 3v47_A 111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI 190 (455)
T ss_dssp TTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTC
T ss_pred CCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccC
Confidence 66554333322 2356666666666666544431 1 156666666654333333321 34455555544
Q ss_pred c
Q 041335 330 E 330 (594)
Q Consensus 330 ~ 330 (594)
.
T Consensus 191 ~ 191 (455)
T 3v47_A 191 T 191 (455)
T ss_dssp B
T ss_pred c
Confidence 3
No 80
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.92 E-value=7.5e-10 Score=113.52 Aligned_cols=59 Identities=25% Similarity=0.291 Sum_probs=35.1
Q ss_pred ccCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCcccccccEEEeecCC
Q 041335 185 QEIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPELPLCLKSLDLMDCK 246 (594)
Q Consensus 185 ~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~i~~~L~~L~L~~c~ 246 (594)
+.+..+++|++|++++|.++.+++ ++.+++|++|+|++|. +..+|.. ++|+.|++++|.
T Consensus 52 ~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~~~-~~L~~L~l~~n~ 110 (317)
T 3o53_A 52 ADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLVG-PSIETLHAANNN 110 (317)
T ss_dssp HHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEEEC-TTCCEEECCSSC
T ss_pred HHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-cccccCC-CCcCEEECCCCc
Confidence 356667777777777777765554 6677777777777654 4443321 345555555444
No 81
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.92 E-value=3.3e-09 Score=117.48 Aligned_cols=141 Identities=19% Similarity=0.177 Sum_probs=69.9
Q ss_pred CccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc-cc--ccccEEEeecCCCCcccC---CCCC---CccEEE
Q 041335 192 SLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE-LP--LCLKSLDLMDCKILQSLP---ALPL---CLESLA 262 (594)
Q Consensus 192 ~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i~--~~L~~L~L~~c~~l~~lp---~~~~---~L~~L~ 262 (594)
+|++|++++|.+..++. .+.+++|++|++++|.....+|. +. ++|+.|++++|. +..+| ..+. +|++|+
T Consensus 332 ~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~ 409 (562)
T 3a79_B 332 NIKMLSISDTPFIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLD 409 (562)
T ss_dssp CCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEE
T ss_pred cceEEEccCCCcccccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEE
Confidence 45666666665543321 14555666666665543333443 32 456666666554 33222 2222 566666
Q ss_pred eeCCCCCCcCCCC----CCCccEEeeecCCCCCCchhhh-cccccccccccccccccCcc---cccccccccccccccCC
Q 041335 263 LTGCNMLRSIPEL----PLCLKYLNLEDCNMLRSLPELS-LCLQSLNARNCNRLRSLPEI---PSCLQELDASVLEKLSK 334 (594)
Q Consensus 263 Ls~c~~l~~lp~~----~~~L~~L~Ls~c~~~~~L~~l~-~~L~~L~L~~c~~L~~lp~l---~~sL~~L~~~~c~~L~~ 334 (594)
|++|...+.+|.. +++|+.|+|++|.+.+.++... .+|+.|+|++| .++.+|.. .++|+.|+++++. ++.
T Consensus 410 l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~ 487 (562)
T 3a79_B 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ-LKS 487 (562)
T ss_dssp CTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC-CCC
T ss_pred CCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC-CCC
Confidence 6655443334432 3556666666666555444322 25666666654 44555543 3455666665543 334
Q ss_pred CC
Q 041335 335 PS 336 (594)
Q Consensus 335 ~~ 336 (594)
++
T Consensus 488 l~ 489 (562)
T 3a79_B 488 VP 489 (562)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 82
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.90 E-value=6.4e-09 Score=100.82 Aligned_cols=99 Identities=23% Similarity=0.354 Sum_probs=65.5
Q ss_pred CCccEEEEeCCCCCccCc-cccCCCCCcEEEccCCCCCccC-Cc-cc--ccccEEEeecCCCCcccCCCCC----CccEE
Q 041335 191 SSLTGLHLSGNNFESLPA-SIKQLSQLSSLDLKDCKMLQSL-PE-LP--LCLKSLDLMDCKILQSLPALPL----CLESL 261 (594)
Q Consensus 191 ~~L~~L~l~~~~l~~lP~-~~~~l~~L~~L~Ls~c~~l~~l-P~-i~--~~L~~L~L~~c~~l~~lp~~~~----~L~~L 261 (594)
++|+.|++++|.++.+|. .|..+++|++|+|++|. +..+ |. +. ++|+.|+|++|. +..+|..+. +|++|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLL 109 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCCCCCCEE
Confidence 478888888888887765 67788888888888765 4444 44 43 578888888765 566666542 77777
Q ss_pred EeeCCCCCCcCCCC---CCCccEEeeecCCCCC
Q 041335 262 ALTGCNMLRSIPEL---PLCLKYLNLEDCNMLR 291 (594)
Q Consensus 262 ~Ls~c~~l~~lp~~---~~~L~~L~Ls~c~~~~ 291 (594)
+|++|......|.. +++|+.|+|++|.+.+
T Consensus 110 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 142 (220)
T 2v9t_B 110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT 142 (220)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred ECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE
Confidence 77775433332332 3567777777776554
No 83
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.90 E-value=1.1e-08 Score=118.80 Aligned_cols=106 Identities=19% Similarity=0.207 Sum_probs=46.1
Q ss_pred cCcCCCCccEEEEeCCC-CCcc-CccccCCCCCcEEEccCCCCCccCCc-cc--ccccEEEeecCCCCcccCCC--CC--
Q 041335 186 EIACLSSLTGLHLSGNN-FESL-PASIKQLSQLSSLDLKDCKMLQSLPE-LP--LCLKSLDLMDCKILQSLPAL--PL-- 256 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~-l~~l-P~~~~~l~~L~~L~Ls~c~~l~~lP~-i~--~~L~~L~L~~c~~l~~lp~~--~~-- 256 (594)
.|..+++|++|++++|. +..+ |..|+++++|++|+|++|......|. +. ++|+.|+|++|.....+|.. +.
T Consensus 43 ~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122 (844)
T ss_dssp SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSC
T ss_pred HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCcccccc
Confidence 44455555555555552 2233 34455555555555554442222233 22 34555555554433333332 22
Q ss_pred -CccEEEeeCCCCCCcCC----CCCCCccEEeeecCCCCC
Q 041335 257 -CLESLALTGCNMLRSIP----ELPLCLKYLNLEDCNMLR 291 (594)
Q Consensus 257 -~L~~L~Ls~c~~l~~lp----~~~~~L~~L~Ls~c~~~~ 291 (594)
+|++|+|++|...+..| ..+++|+.|+|++|.+.+
T Consensus 123 ~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp SSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 45555555543322222 113445555555554443
No 84
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.90 E-value=4.1e-09 Score=117.66 Aligned_cols=102 Identities=20% Similarity=0.215 Sum_probs=47.7
Q ss_pred cCCCCccEEEEeCCCCCccCc-cccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCCC-C---Cc
Q 041335 188 ACLSSLTGLHLSGNNFESLPA-SIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPALP-L---CL 258 (594)
Q Consensus 188 ~~L~~L~~L~l~~~~l~~lP~-~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~~-~---~L 258 (594)
..+++|++|++++|.++.+|+ .|+.+++|++|+|++|. +..+|. +. ++|+.|+|++|. +..+|..+ . +|
T Consensus 72 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L 149 (597)
T 3oja_B 72 DSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKL 149 (597)
T ss_dssp HHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTC
T ss_pred ccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCC
Confidence 445555555555555554432 45555555555555543 333332 22 355555555543 34444432 1 45
Q ss_pred cEEEeeCCCCCCcCCCC---CCCccEEeeecCCCCC
Q 041335 259 ESLALTGCNMLRSIPEL---PLCLKYLNLEDCNMLR 291 (594)
Q Consensus 259 ~~L~Ls~c~~l~~lp~~---~~~L~~L~Ls~c~~~~ 291 (594)
++|+|++|...+..|.. +++|+.|+|++|.+.+
T Consensus 150 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 150 TTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp CEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred CEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 55555554333222221 2445555555554443
No 85
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.89 E-value=3.4e-09 Score=97.86 Aligned_cols=100 Identities=29% Similarity=0.405 Sum_probs=72.1
Q ss_pred CCCccEEEEeCCCCC--ccCccccCCCCCcEEEccCCCCCccCCccc--ccccEEEeecCCCCcccCCCCC---CccEEE
Q 041335 190 LSSLTGLHLSGNNFE--SLPASIKQLSQLSSLDLKDCKMLQSLPELP--LCLKSLDLMDCKILQSLPALPL---CLESLA 262 (594)
Q Consensus 190 L~~L~~L~l~~~~l~--~lP~~~~~l~~L~~L~Ls~c~~l~~lP~i~--~~L~~L~L~~c~~l~~lp~~~~---~L~~L~ 262 (594)
.++|+.|++++|.++ .+|..+..+++|++|+|++|. +..++.+. ++|+.|++++|.....+|..+. +|++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 468999999999998 899888999999999999876 66664443 5888888888774444555433 778888
Q ss_pred eeCCCCCCcCC--C---CCCCccEEeeecCCCCC
Q 041335 263 LTGCNMLRSIP--E---LPLCLKYLNLEDCNMLR 291 (594)
Q Consensus 263 Ls~c~~l~~lp--~---~~~~L~~L~Ls~c~~~~ 291 (594)
|++| .+..+| . .+++|+.|++++|.+.+
T Consensus 102 Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~ 134 (168)
T 2ell_A 102 LSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTN 134 (168)
T ss_dssp CBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGT
T ss_pred ccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcc
Confidence 8776 445544 1 23567777777766554
No 86
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.88 E-value=1.5e-09 Score=119.81 Aligned_cols=147 Identities=22% Similarity=0.178 Sum_probs=99.9
Q ss_pred cCCCCccEEEEeCCCCCcc---CccccCCCCCcEEEccCCCCCccCCc-cc--ccccEEEeecCCCCcccCC-CCC---C
Q 041335 188 ACLSSLTGLHLSGNNFESL---PASIKQLSQLSSLDLKDCKMLQSLPE-LP--LCLKSLDLMDCKILQSLPA-LPL---C 257 (594)
Q Consensus 188 ~~L~~L~~L~l~~~~l~~l---P~~~~~l~~L~~L~Ls~c~~l~~lP~-i~--~~L~~L~L~~c~~l~~lp~-~~~---~ 257 (594)
..+++|++|++++|.++.+ |..+..+++|++|++++|. +..+|. +. ++|+.|++++|......|. .+. +
T Consensus 344 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~ 422 (570)
T 2z63_A 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRN 422 (570)
T ss_dssp CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTT
T ss_pred ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCc-cccccccccccCCCCEEEccCCccccccchhhhhcCCC
Confidence 5677888888888888755 5677888888888888775 555554 33 5888888888774443342 222 7
Q ss_pred ccEEEeeCCCCCCcCCCC---CCCccEEeeecCCCC-CCchhhh---cccccccccccccccccCcc---cccccccccc
Q 041335 258 LESLALTGCNMLRSIPEL---PLCLKYLNLEDCNML-RSLPELS---LCLQSLNARNCNRLRSLPEI---PSCLQELDAS 327 (594)
Q Consensus 258 L~~L~Ls~c~~l~~lp~~---~~~L~~L~Ls~c~~~-~~L~~l~---~~L~~L~L~~c~~L~~lp~l---~~sL~~L~~~ 327 (594)
|++|++++|......|.. +++|+.|+|++|.+. +.+|... .+|+.|+|++|......|.. +++|+.|+++
T Consensus 423 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 502 (570)
T 2z63_A 423 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA 502 (570)
T ss_dssp CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCC
Confidence 888888887665555543 467888888888776 3454322 17888888887554444543 5678888888
Q ss_pred cccccCCCC
Q 041335 328 VLEKLSKPS 336 (594)
Q Consensus 328 ~c~~L~~~~ 336 (594)
+|. ++.++
T Consensus 503 ~n~-l~~~~ 510 (570)
T 2z63_A 503 SNQ-LKSVP 510 (570)
T ss_dssp SSC-CSCCC
T ss_pred CCc-CCCCC
Confidence 773 44443
No 87
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.88 E-value=5.4e-09 Score=110.09 Aligned_cols=140 Identities=23% Similarity=0.228 Sum_probs=93.7
Q ss_pred CcCCCCccEEEEeCCCCCccCc-cccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCCC-C---C
Q 041335 187 IACLSSLTGLHLSGNNFESLPA-SIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPALP-L---C 257 (594)
Q Consensus 187 l~~L~~L~~L~l~~~~l~~lP~-~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~~-~---~ 257 (594)
+..+++|++|++++|.++.+|. .|+.+++|++|+|++|. +..+|. +. ++|+.|++++|. +..+|..+ . +
T Consensus 65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~ 142 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPK 142 (390)
T ss_dssp HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTT
T ss_pred hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCC
Confidence 5678888888888888887764 78888888888888776 555543 33 588888888876 66777664 2 7
Q ss_pred ccEEEeeCCCCCCcCCC---CCCCccEEeeecCCCCCCchhhhcccccccccccccccccCccccccccccccccc
Q 041335 258 LESLALTGCNMLRSIPE---LPLCLKYLNLEDCNMLRSLPELSLCLQSLNARNCNRLRSLPEIPSCLQELDASVLE 330 (594)
Q Consensus 258 L~~L~Ls~c~~l~~lp~---~~~~L~~L~Ls~c~~~~~L~~l~~~L~~L~L~~c~~L~~lp~l~~sL~~L~~~~c~ 330 (594)
|++|+|++|......|. .+++|+.|++++|.+.+.-.....+|+.|++++| .++.++ .+.+|+.|+++++.
T Consensus 143 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~L~~L~l~~n~ 216 (390)
T 3o6n_A 143 LTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYN-LLSTLA-IPIAVEELDASHNS 216 (390)
T ss_dssp CCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSS-CCSEEE-CCSSCSEEECCSSC
T ss_pred CcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccc-cccccC-CCCcceEEECCCCe
Confidence 88888888654433333 2477888888888776521122226666777664 334332 24456666666553
No 88
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.88 E-value=4.3e-09 Score=117.54 Aligned_cols=141 Identities=18% Similarity=0.175 Sum_probs=99.1
Q ss_pred ccCcCCCCccEEEEeCCCCCccCc-cccCCCCCcEEEccCCCCCccCCc-c-c--ccccEEEeecCCCCcccCCCCC---
Q 041335 185 QEIACLSSLTGLHLSGNNFESLPA-SIKQLSQLSSLDLKDCKMLQSLPE-L-P--LCLKSLDLMDCKILQSLPALPL--- 256 (594)
Q Consensus 185 ~~l~~L~~L~~L~l~~~~l~~lP~-~~~~l~~L~~L~Ls~c~~l~~lP~-i-~--~~L~~L~L~~c~~l~~lp~~~~--- 256 (594)
..|..+++|++|++++|.++.+|+ .|+++++|++|+|++|. +..+|. + . ++|+.|+|++|......|..+.
T Consensus 93 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 171 (597)
T 3oja_B 93 YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT 171 (597)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCT
T ss_pred HHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCC
Confidence 367888888888888888887765 46888888888888775 667776 3 3 5888888888875444444454
Q ss_pred CccEEEeeCCCCCCcCC-CCCCCccEEeeecCCCCCCchhhhcccccccccccccccccCc-cccccccccccccc
Q 041335 257 CLESLALTGCNMLRSIP-ELPLCLKYLNLEDCNMLRSLPELSLCLQSLNARNCNRLRSLPE-IPSCLQELDASVLE 330 (594)
Q Consensus 257 ~L~~L~Ls~c~~l~~lp-~~~~~L~~L~Ls~c~~~~~L~~l~~~L~~L~L~~c~~L~~lp~-l~~sL~~L~~~~c~ 330 (594)
+|++|+|++|.. ..++ ..+++|+.|++++|.+.+ ++... +|+.|++++|. +..+|. .+++|+.|++++|.
T Consensus 172 ~L~~L~L~~N~l-~~~~~~~l~~L~~L~l~~n~l~~-l~~~~-~L~~L~ls~n~-l~~~~~~~~~~L~~L~L~~n~ 243 (597)
T 3oja_B 172 SLQNLQLSSNRL-THVDLSLIPSLFHANVSYNLLST-LAIPI-AVEELDASHNS-INVVRGPVNVELTILKLQHNN 243 (597)
T ss_dssp TCCEEECTTSCC-SBCCGGGCTTCSEEECCSSCCSE-EECCT-TCSEEECCSSC-CCEEECSCCSCCCEEECCSSC
T ss_pred cCcEEECcCCCC-CCcChhhhhhhhhhhcccCcccc-ccCCc-hhheeeccCCc-ccccccccCCCCCEEECCCCC
Confidence 788888888653 3344 456788888888886654 22111 68888888854 444443 46778888887764
No 89
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.88 E-value=9.2e-09 Score=99.70 Aligned_cols=132 Identities=17% Similarity=0.256 Sum_probs=98.8
Q ss_pred ccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCCCC---CccEEEeeC
Q 041335 193 LTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPALPL---CLESLALTG 265 (594)
Q Consensus 193 L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~~~---~L~~L~Ls~ 265 (594)
-+.++.+++.++.+|..+. ++|+.|+|++|. +..+|. +. ++|+.|+|++|......|..+. +|++|+|++
T Consensus 13 ~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~-i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNLP--ETITEIRLEQNT-IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp TTEEECTTSCCSSCCSSCC--TTCCEEECCSSC-CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CCEEEcCCCCcCcCCCccC--cCCCEEECCCCc-CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 4678899999999998775 789999999875 777765 43 6999999999885444466665 899999999
Q ss_pred CCCCCcCCCC----CCCccEEeeecCCCCCCchhhh---cccccccccccccccccCcc----cccccccccccc
Q 041335 266 CNMLRSIPEL----PLCLKYLNLEDCNMLRSLPELS---LCLQSLNARNCNRLRSLPEI----PSCLQELDASVL 329 (594)
Q Consensus 266 c~~l~~lp~~----~~~L~~L~Ls~c~~~~~L~~l~---~~L~~L~L~~c~~L~~lp~l----~~sL~~L~~~~c 329 (594)
| .+..+|.. +++|+.|+|++|.+.+..+... .+|+.|+|++| .++.+|.. .++|+.|+++++
T Consensus 90 N-~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 90 N-KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp S-CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred C-cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCC
Confidence 5 56677753 4789999999999887544322 27899999985 45665542 455666666554
No 90
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=98.87 E-value=4.9e-09 Score=116.86 Aligned_cols=150 Identities=26% Similarity=0.167 Sum_probs=114.8
Q ss_pred eecccCcCCCCccEEEEeCCCCCcc-CccccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCccc--CCC
Q 041335 182 EILQEIACLSSLTGLHLSGNNFESL-PASIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSL--PAL 254 (594)
Q Consensus 182 ~~l~~l~~L~~L~~L~l~~~~l~~l-P~~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~l--p~~ 254 (594)
++|+++..+++|++|++++|.++.+ |..++.+++|++|++++|.....+|. +. ++|+.|++++|...... |..
T Consensus 292 ~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 371 (606)
T 3t6q_A 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371 (606)
T ss_dssp CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTT
T ss_pred CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchh
Confidence 3667889999999999999999977 56899999999999999986667765 33 68999999998754433 544
Q ss_pred CC---CccEEEeeCCCCCCcCCCC---CCCccEEeeecCCCCCCchhh----hcccccccccccccccccCcc---cccc
Q 041335 255 PL---CLESLALTGCNMLRSIPEL---PLCLKYLNLEDCNMLRSLPEL----SLCLQSLNARNCNRLRSLPEI---PSCL 321 (594)
Q Consensus 255 ~~---~L~~L~Ls~c~~l~~lp~~---~~~L~~L~Ls~c~~~~~L~~l----~~~L~~L~L~~c~~L~~lp~l---~~sL 321 (594)
+. +|++|++++|......|.. +++|+.|++++|.+.+..+.. ..+|+.|++++|......|.. +++|
T Consensus 372 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 451 (606)
T 3t6q_A 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPAL 451 (606)
T ss_dssp TTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTC
T ss_pred cccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCC
Confidence 44 8999999997655544543 478999999999887654321 127899999997665555543 6788
Q ss_pred cccccccccc
Q 041335 322 QELDASVLEK 331 (594)
Q Consensus 322 ~~L~~~~c~~ 331 (594)
++|++++|..
T Consensus 452 ~~L~L~~n~l 461 (606)
T 3t6q_A 452 QHLNLQGNHF 461 (606)
T ss_dssp CEEECTTCBC
T ss_pred CEEECCCCCC
Confidence 8899888864
No 91
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.86 E-value=4.1e-09 Score=117.45 Aligned_cols=121 Identities=28% Similarity=0.337 Sum_probs=91.9
Q ss_pred CC-CccEEEEeCCCCCccCc-cccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCCC-C---Ccc
Q 041335 190 LS-SLTGLHLSGNNFESLPA-SIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPALP-L---CLE 259 (594)
Q Consensus 190 L~-~L~~L~l~~~~l~~lP~-~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~~-~---~L~ 259 (594)
+| ++++|++++|.|+.+|+ .|+++++|++|+|++|. +..+|. +. ++|++|+|++|+ +..+|... . +|+
T Consensus 50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~ 127 (635)
T 4g8a_A 50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQ 127 (635)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCC
T ss_pred CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCC
Confidence 45 89999999999998874 68999999999999875 777765 44 689999999986 77787653 3 899
Q ss_pred EEEeeCCCCCCcCCCC----CCCccEEeeecCCCCC-Cchhhhc---cccccccccccccccc
Q 041335 260 SLALTGCNMLRSIPEL----PLCLKYLNLEDCNMLR-SLPELSL---CLQSLNARNCNRLRSL 314 (594)
Q Consensus 260 ~L~Ls~c~~l~~lp~~----~~~L~~L~Ls~c~~~~-~L~~l~~---~L~~L~L~~c~~L~~l 314 (594)
+|+|++| .+..+|.. +++|+.|+|++|.+.+ .+|.... +|+.|++++|+ ++.+
T Consensus 128 ~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~ 188 (635)
T 4g8a_A 128 KLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK-IQSI 188 (635)
T ss_dssp EEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC-CCEE
T ss_pred EEECCCC-cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc-cccc
Confidence 9999986 45566642 4789999999998765 3444322 78888998864 4444
No 92
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.85 E-value=5.5e-09 Score=105.85 Aligned_cols=171 Identities=20% Similarity=0.186 Sum_probs=124.0
Q ss_pred ccCCCCceecCCchhHHHHHhccCccceeeecccCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc
Q 041335 153 EKQPGKRSRLWDPKEIRRVLKQKRNCAVMEILQEIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE 232 (594)
Q Consensus 153 ~~~~~~~~~l~~~~~i~~vl~~~~~~~~i~~l~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~ 232 (594)
...|.....++.......++....+...+.-...+..+++|++|++++|.++.+| .++.+++|++|+|++|. +..++.
T Consensus 8 ~~~p~~i~~~f~d~~l~~~~~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~-l~~~~~ 85 (291)
T 1h6t_A 8 ITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP 85 (291)
T ss_dssp CSSCEEHHHHCCSHHHHHHHHHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG
T ss_pred cCCCCCHhhhCCCHHHHHHHHHHhcCCCcccccchhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCc-cCCCcc
Confidence 3445455555555555555555444444332234567889999999999999997 48999999999999876 677766
Q ss_pred cc--ccccEEEeecCCCCcccCCCCC--CccEEEeeCCCCCCcCCC--CCCCccEEeeecCCCCCCchhhh--ccccccc
Q 041335 233 LP--LCLKSLDLMDCKILQSLPALPL--CLESLALTGCNMLRSIPE--LPLCLKYLNLEDCNMLRSLPELS--LCLQSLN 304 (594)
Q Consensus 233 i~--~~L~~L~L~~c~~l~~lp~~~~--~L~~L~Ls~c~~l~~lp~--~~~~L~~L~Ls~c~~~~~L~~l~--~~L~~L~ 304 (594)
+. ++|+.|++++|. +..+|.... +|++|+|++|. +..++. .+++|+.|++++|.+.+- +.+. .+|+.|+
T Consensus 86 l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~-i~~~~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~ 162 (291)
T 1h6t_A 86 LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLEHNG-ISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLS 162 (291)
T ss_dssp GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEE
T ss_pred cccCCCCCEEECCCCc-CCCChhhccCCCCCEEECCCCc-CCCChhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEE
Confidence 43 699999999987 666665322 89999999974 555653 358899999999988763 4332 2899999
Q ss_pred ccccccccccCcc--cccccccccccc
Q 041335 305 ARNCNRLRSLPEI--PSCLQELDASVL 329 (594)
Q Consensus 305 L~~c~~L~~lp~l--~~sL~~L~~~~c 329 (594)
+++| .++.++.+ +++|+.|++++|
T Consensus 163 L~~N-~l~~~~~l~~l~~L~~L~L~~N 188 (291)
T 1h6t_A 163 LEDN-QISDIVPLAGLTKLQNLYLSKN 188 (291)
T ss_dssp CCSS-CCCCCGGGTTCTTCCEEECCSS
T ss_pred ccCC-ccccchhhcCCCccCEEECCCC
Confidence 9996 45666544 567888888877
No 93
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=98.85 E-value=2.8e-09 Score=116.10 Aligned_cols=139 Identities=19% Similarity=0.122 Sum_probs=110.5
Q ss_pred CCCCccEEEEeCCCCCccC-ccccCCCCCcEEEccCCCCCccCCccc--ccccEEEeecCCCCcccCCCCCCccEEEeeC
Q 041335 189 CLSSLTGLHLSGNNFESLP-ASIKQLSQLSSLDLKDCKMLQSLPELP--LCLKSLDLMDCKILQSLPALPLCLESLALTG 265 (594)
Q Consensus 189 ~L~~L~~L~l~~~~l~~lP-~~~~~l~~L~~L~Ls~c~~l~~lP~i~--~~L~~L~L~~c~~l~~lp~~~~~L~~L~Ls~ 265 (594)
.+++|++|++++|.++.+| ..|+.+++|++|+|++|. +..++.+. ++|+.|+|++|. +..+|.. .+|++|++++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~l~~~-~~L~~L~L~~ 108 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNY-VQELLVG-PSIETLHAAN 108 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEECTTCTTCCEEECCSSE-EEEEEEC-TTCCEEECCS
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcccccCCCCCEEEecCCc-CCCCCCC-CCcCEEECcC
Confidence 4558999999999999875 689999999999999887 54444443 699999999986 6666643 5899999999
Q ss_pred CCCCCcCCCCCCCccEEeeecCCCCCCchhhh---cccccccccccccccccCcc----ccccccccccccc
Q 041335 266 CNMLRSIPELPLCLKYLNLEDCNMLRSLPELS---LCLQSLNARNCNRLRSLPEI----PSCLQELDASVLE 330 (594)
Q Consensus 266 c~~l~~lp~~~~~L~~L~Ls~c~~~~~L~~l~---~~L~~L~L~~c~~L~~lp~l----~~sL~~L~~~~c~ 330 (594)
|......+..+++|+.|+|++|.+.+..|... .+|+.|+|++|......|.. +++|+.|++++|.
T Consensus 109 N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~ 180 (487)
T 3oja_A 109 NNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (487)
T ss_dssp SCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred CcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence 87666656677999999999999988655322 28999999997655544442 4789999998875
No 94
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.85 E-value=4.5e-10 Score=115.62 Aligned_cols=147 Identities=24% Similarity=0.256 Sum_probs=108.5
Q ss_pred ccCcCCCCccEEEEeCCCCCc--cCccccCCCCCcEEEccCCCCCccCCc-cc--ccccEEEeecCCCCc--ccCCCCC-
Q 041335 185 QEIACLSSLTGLHLSGNNFES--LPASIKQLSQLSSLDLKDCKMLQSLPE-LP--LCLKSLDLMDCKILQ--SLPALPL- 256 (594)
Q Consensus 185 ~~l~~L~~L~~L~l~~~~l~~--lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i~--~~L~~L~L~~c~~l~--~lp~~~~- 256 (594)
..+..+++|++|++++|.++. +|..++.+++|++|+|++|......|. +. ++|+.|++++|..+. .+|..+.
T Consensus 87 ~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~ 166 (336)
T 2ast_B 87 AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 166 (336)
T ss_dssp CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH
T ss_pred hhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhc
Confidence 346678899999999999873 788899999999999999864334554 43 699999999996555 3555333
Q ss_pred --CccEEEeeCCCCCCc--CCC---CCC-CccEEeeecC--CCC-CCchhhh---cccccccccccccccc-cC-cc--c
Q 041335 257 --CLESLALTGCNMLRS--IPE---LPL-CLKYLNLEDC--NML-RSLPELS---LCLQSLNARNCNRLRS-LP-EI--P 318 (594)
Q Consensus 257 --~L~~L~Ls~c~~l~~--lp~---~~~-~L~~L~Ls~c--~~~-~~L~~l~---~~L~~L~L~~c~~L~~-lp-~l--~ 318 (594)
+|++|+|++|..+.. ++. .++ +|+.|+|++| .+. +.++... .+|+.|+|++|..++. .+ .+ .
T Consensus 167 ~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l 246 (336)
T 2ast_B 167 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL 246 (336)
T ss_dssp CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC
T ss_pred CCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCC
Confidence 899999999855553 343 246 9999999999 444 3444432 2899999999986542 22 22 5
Q ss_pred ccccccccccccc
Q 041335 319 SCLQELDASVLEK 331 (594)
Q Consensus 319 ~sL~~L~~~~c~~ 331 (594)
++|+.|++++|..
T Consensus 247 ~~L~~L~l~~~~~ 259 (336)
T 2ast_B 247 NYLQHLSLSRCYD 259 (336)
T ss_dssp TTCCEEECTTCTT
T ss_pred CCCCEeeCCCCCC
Confidence 7899999999973
No 95
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=98.84 E-value=1.8e-09 Score=110.72 Aligned_cols=140 Identities=19% Similarity=0.121 Sum_probs=101.9
Q ss_pred cCCCCccEEEEeCCCCCccC-ccccCCCCCcEEEccCCCCCccCCccc--ccccEEEeecCCCCcccCCCCCCccEEEee
Q 041335 188 ACLSSLTGLHLSGNNFESLP-ASIKQLSQLSSLDLKDCKMLQSLPELP--LCLKSLDLMDCKILQSLPALPLCLESLALT 264 (594)
Q Consensus 188 ~~L~~L~~L~l~~~~l~~lP-~~~~~l~~L~~L~Ls~c~~l~~lP~i~--~~L~~L~L~~c~~l~~lp~~~~~L~~L~Ls 264 (594)
..+++|++|++++|.++.++ ..|+.+++|++|+|++|. +..++.+. ++|+.|++++|. +..+|.. .+|++|+++
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~-~~L~~L~l~ 107 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDLNNNY-VQELLVG-PSIETLHAA 107 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEEEETTCTTCCEEECCSSE-EEEEEEC-TTCCEEECC
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcchhhhhcCCCCEEECcCCc-cccccCC-CCcCEEECC
Confidence 45679999999999999876 579999999999999876 55454443 699999999987 6666633 488999998
Q ss_pred CCCCCCcCCCCCCCccEEeeecCCCCCCchhhh---cccccccccccccccccCcc----ccccccccccccc
Q 041335 265 GCNMLRSIPELPLCLKYLNLEDCNMLRSLPELS---LCLQSLNARNCNRLRSLPEI----PSCLQELDASVLE 330 (594)
Q Consensus 265 ~c~~l~~lp~~~~~L~~L~Ls~c~~~~~L~~l~---~~L~~L~L~~c~~L~~lp~l----~~sL~~L~~~~c~ 330 (594)
+|...+..+..+++|+.|++++|.+.+..+... .+|+.|+|++|......|.. +++|++|++++|.
T Consensus 108 ~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~ 180 (317)
T 3o53_A 108 NNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF 180 (317)
T ss_dssp SSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred CCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc
Confidence 876554444566788888888888776433211 26888888886443322221 3678888887764
No 96
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=98.83 E-value=2.2e-08 Score=116.34 Aligned_cols=141 Identities=21% Similarity=0.126 Sum_probs=97.9
Q ss_pred CCCccEEEEeCCCCCcc-CccccCCCCCcEEEccCCCCCccCC-c-cc--ccccEEEeecCCCCcccCCCCC---CccEE
Q 041335 190 LSSLTGLHLSGNNFESL-PASIKQLSQLSSLDLKDCKMLQSLP-E-LP--LCLKSLDLMDCKILQSLPALPL---CLESL 261 (594)
Q Consensus 190 L~~L~~L~l~~~~l~~l-P~~~~~l~~L~~L~Ls~c~~l~~lP-~-i~--~~L~~L~L~~c~~l~~lp~~~~---~L~~L 261 (594)
.++|++|++++|.++.+ |..|+++++|++|+|++|.....++ . +. ++|+.|+|++|......|..+. +|++|
T Consensus 23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 34889999999888865 6788889999999999887677774 3 44 5889999988875555576666 88899
Q ss_pred EeeCCCCCCcCCC-----CCCCccEEeeecCCCCCCch-hhh---cccccccccccccccccCccc-----ccccccccc
Q 041335 262 ALTGCNMLRSIPE-----LPLCLKYLNLEDCNMLRSLP-ELS---LCLQSLNARNCNRLRSLPEIP-----SCLQELDAS 327 (594)
Q Consensus 262 ~Ls~c~~l~~lp~-----~~~~L~~L~Ls~c~~~~~L~-~l~---~~L~~L~L~~c~~L~~lp~l~-----~sL~~L~~~ 327 (594)
+|++|...+.+|. .+++|+.|+|++|.+.+..+ ... .+|+.|+|++|..-...|... ++|+.|+++
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~ 182 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEEC
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECC
Confidence 9988766655554 24788999999888876432 111 278888888765433333321 445555555
Q ss_pred ccc
Q 041335 328 VLE 330 (594)
Q Consensus 328 ~c~ 330 (594)
+|.
T Consensus 183 ~n~ 185 (844)
T 3j0a_A 183 ANS 185 (844)
T ss_dssp CSB
T ss_pred CCc
Confidence 554
No 97
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.82 E-value=2.2e-08 Score=97.57 Aligned_cols=131 Identities=27% Similarity=0.230 Sum_probs=97.6
Q ss_pred CccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccC-Cc-cc--ccccEEEeecCCCCcccCCCC-C---CccEEEe
Q 041335 192 SLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSL-PE-LP--LCLKSLDLMDCKILQSLPALP-L---CLESLAL 263 (594)
Q Consensus 192 ~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~l-P~-i~--~~L~~L~L~~c~~l~~lp~~~-~---~L~~L~L 263 (594)
..+.++.+++.++.+|..+. ++|++|+|++|. +..+ |. +. ++|+.|+|++|. +..+|... . +|++|+|
T Consensus 20 s~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~L 95 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGIP--TNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDL 95 (229)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred eCCEeEccCCCcCccCCCCC--CCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEEC
Confidence 45678888999999998764 899999999877 5555 44 43 699999999987 67787654 2 8999999
Q ss_pred eCCCCCCcCCC----CCCCccEEeeecCCCCCCchhhh---cccccccccccccccccCcc----cccccccccccc
Q 041335 264 TGCNMLRSIPE----LPLCLKYLNLEDCNMLRSLPELS---LCLQSLNARNCNRLRSLPEI----PSCLQELDASVL 329 (594)
Q Consensus 264 s~c~~l~~lp~----~~~~L~~L~Ls~c~~~~~L~~l~---~~L~~L~L~~c~~L~~lp~l----~~sL~~L~~~~c 329 (594)
++| .+..+|. .+++|+.|+|++|.+. .+|... .+|+.|+|++| .++.+|.. .++|+.|++.++
T Consensus 96 s~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 169 (229)
T 3e6j_A 96 GTN-QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGN 169 (229)
T ss_dssp CSS-CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCC-cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCC
Confidence 996 5566664 3578999999999877 455322 27888999885 56666642 455666666554
No 98
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.82 E-value=1e-08 Score=112.08 Aligned_cols=143 Identities=16% Similarity=0.087 Sum_probs=78.6
Q ss_pred CccEEEEeCCCCC-ccCccc-----cCCCCCcEEEccCCCCCccCCc-----------------------------cccc
Q 041335 192 SLTGLHLSGNNFE-SLPASI-----KQLSQLSSLDLKDCKMLQSLPE-----------------------------LPLC 236 (594)
Q Consensus 192 ~L~~L~l~~~~l~-~lP~~~-----~~l~~L~~L~Ls~c~~l~~lP~-----------------------------i~~~ 236 (594)
+|++|++++|.++ .+|..+ +.+++|+.+++++|.. .+|. -.++
T Consensus 248 ~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~ 325 (520)
T 2z7x_B 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISP 325 (520)
T ss_dssp SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCC
T ss_pred cccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCc
Confidence 5666666666555 566655 5566665555555442 4441 2245
Q ss_pred ccEEEeecCCCCcccCCCCC---CccEEEeeCCCCCC--cCC---CCCCCccEEeeecCCCCCCchhhh----ccccccc
Q 041335 237 LKSLDLMDCKILQSLPALPL---CLESLALTGCNMLR--SIP---ELPLCLKYLNLEDCNMLRSLPELS----LCLQSLN 304 (594)
Q Consensus 237 L~~L~L~~c~~l~~lp~~~~---~L~~L~Ls~c~~l~--~lp---~~~~~L~~L~Ls~c~~~~~L~~l~----~~L~~L~ 304 (594)
|+.|++++|.....+|..+. +|++|+|++|...+ .+| ..+++|+.|+|++|.+.+.+|... .+|+.|+
T Consensus 326 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~ 405 (520)
T 2z7x_B 326 FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405 (520)
T ss_dssp CCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEE
T ss_pred ccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEE
Confidence 66666666654444555444 56666666654332 222 234566666666666665455321 1566667
Q ss_pred ccccccccccCcc-cccccccccccccccCCCCc
Q 041335 305 ARNCNRLRSLPEI-PSCLQELDASVLEKLSKPSL 337 (594)
Q Consensus 305 L~~c~~L~~lp~l-~~sL~~L~~~~c~~L~~~~~ 337 (594)
+++|...+.+|.. +++|+.|++++| .++.++.
T Consensus 406 Ls~N~l~~~~~~~l~~~L~~L~Ls~N-~l~~ip~ 438 (520)
T 2z7x_B 406 MSSNILTDTIFRCLPPRIKVLDLHSN-KIKSIPK 438 (520)
T ss_dssp CCSSCCCGGGGGSCCTTCCEEECCSS-CCCCCCG
T ss_pred CcCCCCCcchhhhhcccCCEEECCCC-cccccch
Confidence 7666554555544 356777777666 3444443
No 99
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=98.81 E-value=1.8e-08 Score=111.56 Aligned_cols=103 Identities=24% Similarity=0.142 Sum_probs=61.3
Q ss_pred ccCcCCCCccEEEEeCCCCCcc-CccccCCCCCcEEEccCCCCCccCCc-ccccccEEEeecCCCCccc--CCCCC---C
Q 041335 185 QEIACLSSLTGLHLSGNNFESL-PASIKQLSQLSSLDLKDCKMLQSLPE-LPLCLKSLDLMDCKILQSL--PALPL---C 257 (594)
Q Consensus 185 ~~l~~L~~L~~L~l~~~~l~~l-P~~~~~l~~L~~L~Ls~c~~l~~lP~-i~~~L~~L~L~~c~~l~~l--p~~~~---~ 257 (594)
..+..+++|++|++++|.++.+ |..|+++++|++|+|++|. +..+|. -.++|+.|++++|. +..+ |..+. +
T Consensus 70 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~ 147 (562)
T 3a79_B 70 PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR-LQNISCCPMASLRHLDLSFND-FDVLPVCKEFGNLTK 147 (562)
T ss_dssp GGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC-CCEECSCCCTTCSEEECCSSC-CSBCCCCGGGGGCTT
T ss_pred hhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc-CCccCccccccCCEEECCCCC-ccccCchHhhcccCc
Confidence 3566677777777777777765 4557777777777777654 556665 33567777777766 3333 34444 6
Q ss_pred ccEEEeeCCCCCCcCCCCCCCc--cEEeeecCCC
Q 041335 258 LESLALTGCNMLRSIPELPLCL--KYLNLEDCNM 289 (594)
Q Consensus 258 L~~L~Ls~c~~l~~lp~~~~~L--~~L~Ls~c~~ 289 (594)
|++|+|++|.....-...+++| +.|++++|.+
T Consensus 148 L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 148 LTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSC
T ss_pred ccEEecCCCccccCchhhhhhceeeEEEeecccc
Confidence 7777777654322111222344 6666666655
No 100
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.81 E-value=9.6e-09 Score=102.45 Aligned_cols=121 Identities=24% Similarity=0.324 Sum_probs=97.9
Q ss_pred ccCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc-ccccccEEEeecCCCCcccCCCCC--CccEE
Q 041335 185 QEIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE-LPLCLKSLDLMDCKILQSLPALPL--CLESL 261 (594)
Q Consensus 185 ~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i~~~L~~L~L~~c~~l~~lp~~~~--~L~~L 261 (594)
+++..+++|++|++++|.++.+|. ++.+++|++|+|++|. +..+|. ..++|+.|++++|. +..+|.... +|+.|
T Consensus 57 ~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~~~~L~~L~L~~N~-l~~~~~l~~l~~L~~L 133 (263)
T 1xeu_A 57 AGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR-LKNLNGIPSACLSRLFLDNNE-LRDTDSLIHLKNLEIL 133 (263)
T ss_dssp TTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC-CSCCTTCCCSSCCEEECCSSC-CSBSGGGTTCTTCCEE
T ss_pred hHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc-cCCcCccccCcccEEEccCCc-cCCChhhcCcccccEE
Confidence 478889999999999999999988 9999999999999875 777887 33899999999986 666664222 89999
Q ss_pred EeeCCCCCCcCCC--CCCCccEEeeecCCCCCCchhhh--ccccccccccccc
Q 041335 262 ALTGCNMLRSIPE--LPLCLKYLNLEDCNMLRSLPELS--LCLQSLNARNCNR 310 (594)
Q Consensus 262 ~Ls~c~~l~~lp~--~~~~L~~L~Ls~c~~~~~L~~l~--~~L~~L~L~~c~~ 310 (594)
+|++|. ++.+|. .+++|+.|+|++|.+.+. +.+. .+|+.|++++|+.
T Consensus 134 ~Ls~N~-i~~~~~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~ 184 (263)
T 1xeu_A 134 SIRNNK-LKSIVMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKC 184 (263)
T ss_dssp ECTTSC-CCBCGGGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEE
T ss_pred ECCCCc-CCCChHHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcc
Confidence 999964 666663 358999999999988764 3222 1799999999654
No 101
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.79 E-value=2.3e-08 Score=108.07 Aligned_cols=140 Identities=23% Similarity=0.224 Sum_probs=92.1
Q ss_pred ccCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCccc--ccccEEEeecCCCCcccCCCCC--CccE
Q 041335 185 QEIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPELP--LCLKSLDLMDCKILQSLPALPL--CLES 260 (594)
Q Consensus 185 ~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~i~--~~L~~L~L~~c~~l~~lp~~~~--~L~~ 260 (594)
+.+..+++|++|++++|.++.+++ ++.+++|++|++++|. +..++.+. ++|+.|++++|.. ..++.... +|++
T Consensus 193 ~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l-~~~~~~~~l~~L~~ 269 (466)
T 1o6v_A 193 SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQI-SNLAPLSGLTKLTE 269 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCC-CCCGGGTTCTTCSE
T ss_pred hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCC-cccchhhhcCCCCCEEECCCCcc-ccchhhhcCCCCCE
Confidence 357778888899998888887765 7778888888888765 66666543 5888888888763 33433211 7888
Q ss_pred EEeeCCCCCCcCC--CCCCCccEEeeecCCCCCCchhh-hcccccccccccccccccCcc--cccccccccccc
Q 041335 261 LALTGCNMLRSIP--ELPLCLKYLNLEDCNMLRSLPEL-SLCLQSLNARNCNRLRSLPEI--PSCLQELDASVL 329 (594)
Q Consensus 261 L~Ls~c~~l~~lp--~~~~~L~~L~Ls~c~~~~~L~~l-~~~L~~L~L~~c~~L~~lp~l--~~sL~~L~~~~c 329 (594)
|++++|.. ..+| ..+++|+.|+|++|.+.+..+.. ..+|+.|+|++|+. ..++.. +++|+.|++++|
T Consensus 270 L~l~~n~l-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~l~~n 341 (466)
T 1o6v_A 270 LKLGANQI-SNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI-SDISPVSSLTKLQRLFFYNN 341 (466)
T ss_dssp EECCSSCC-CCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCC-SCCGGGGGCTTCCEEECCSS
T ss_pred EECCCCcc-CccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcC-CCchhhccCccCCEeECCCC
Confidence 88887643 3343 23467788888877766533211 11677777777643 333322 566777777766
No 102
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.79 E-value=1.2e-08 Score=104.20 Aligned_cols=147 Identities=21% Similarity=0.151 Sum_probs=108.5
Q ss_pred CCCccEEEEeCCCCC-ccCccc--cCCCCCcEEEccCCCCCccCCc---c----cccccEEEeecCCCCcccCCCCC---
Q 041335 190 LSSLTGLHLSGNNFE-SLPASI--KQLSQLSSLDLKDCKMLQSLPE---L----PLCLKSLDLMDCKILQSLPALPL--- 256 (594)
Q Consensus 190 L~~L~~L~l~~~~l~-~lP~~~--~~l~~L~~L~Ls~c~~l~~lP~---i----~~~L~~L~L~~c~~l~~lp~~~~--- 256 (594)
+++|++|++++|.+. ..|..+ +.+++|++|+|++|......|. . .++|+.|++++|......|..+.
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 467999999999988 567777 8999999999999875554442 1 36999999999985444445544
Q ss_pred CccEEEeeCCCCCCc-------CCCCCCCccEEeeecCCCCCCchh----h---hcccccccccccccccccCcc-----
Q 041335 257 CLESLALTGCNMLRS-------IPELPLCLKYLNLEDCNMLRSLPE----L---SLCLQSLNARNCNRLRSLPEI----- 317 (594)
Q Consensus 257 ~L~~L~Ls~c~~l~~-------lp~~~~~L~~L~Ls~c~~~~~L~~----l---~~~L~~L~L~~c~~L~~lp~l----- 317 (594)
+|++|+|++|...+. .+..+++|+.|+|++|.+.. ++. + ..+|+.|+|++|..-...|..
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 899999999875431 22356899999999998853 333 1 138999999997654444543
Q ss_pred -cccccccccccccccCCCCcc
Q 041335 318 -PSCLQELDASVLEKLSKPSLD 338 (594)
Q Consensus 318 -~~sL~~L~~~~c~~L~~~~~~ 338 (594)
+++|++|++++|. ++.++..
T Consensus 249 ~~~~L~~L~Ls~N~-l~~lp~~ 269 (310)
T 4glp_A 249 WSSALNSLNLSFAG-LEQVPKG 269 (310)
T ss_dssp CCTTCCCEECCSSC-CCSCCSC
T ss_pred CcCcCCEEECCCCC-CCchhhh
Confidence 3689999998874 5566543
No 103
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.78 E-value=1.5e-08 Score=114.62 Aligned_cols=79 Identities=22% Similarity=0.245 Sum_probs=38.0
Q ss_pred CcCCCCccEEEEeCCCCCccCc-cccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCCCC---Cc
Q 041335 187 IACLSSLTGLHLSGNNFESLPA-SIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPALPL---CL 258 (594)
Q Consensus 187 l~~L~~L~~L~l~~~~l~~lP~-~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~~~---~L 258 (594)
+..+++|++|++++|.++.+|. .|+++++|++|+|++|. +..+|. +. ++|++|++++|......|..+. +|
T Consensus 69 ~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 147 (680)
T 1ziw_A 69 CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENL 147 (680)
T ss_dssp HHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTC
T ss_pred HhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc-cCccChhHccccCCCCEEECCCCcccccCchhhcccccC
Confidence 4445555555555555555544 35555555555555543 333332 22 3555555555543333333332 45
Q ss_pred cEEEeeCC
Q 041335 259 ESLALTGC 266 (594)
Q Consensus 259 ~~L~Ls~c 266 (594)
++|++++|
T Consensus 148 ~~L~L~~n 155 (680)
T 1ziw_A 148 QELLLSNN 155 (680)
T ss_dssp CEEECCSS
T ss_pred CEEEccCC
Confidence 55555554
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.77 E-value=2.3e-08 Score=104.40 Aligned_cols=121 Identities=28% Similarity=0.254 Sum_probs=84.2
Q ss_pred CccEEEEeCCCCCccCcc-cc-CCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCCC-C---CccEE
Q 041335 192 SLTGLHLSGNNFESLPAS-IK-QLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPALP-L---CLESL 261 (594)
Q Consensus 192 ~L~~L~l~~~~l~~lP~~-~~-~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~~-~---~L~~L 261 (594)
.+++|++++|.++.+|.. +. .+++|++|+|++|. +..+|. +. ++|+.|+|++|. +..+|... . +|++|
T Consensus 40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEE
T ss_pred CCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEE
Confidence 688899999998887654 55 88999999998765 666664 43 688999999877 66666543 2 88899
Q ss_pred EeeCCCCCCcCCC---CCCCccEEeeecCCCCCCchhh------hcccccccccccccccccC
Q 041335 262 ALTGCNMLRSIPE---LPLCLKYLNLEDCNMLRSLPEL------SLCLQSLNARNCNRLRSLP 315 (594)
Q Consensus 262 ~Ls~c~~l~~lp~---~~~~L~~L~Ls~c~~~~~L~~l------~~~L~~L~L~~c~~L~~lp 315 (594)
+|++|......|. .+++|+.|+|++|.+.+--+.. ..+|+.|+|++| .++.+|
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~ 179 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLP 179 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS-CCCCCC
T ss_pred ECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC-CCCccC
Confidence 9988654333333 3478888888888776522221 126777888774 456665
No 105
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.76 E-value=5.3e-09 Score=115.48 Aligned_cols=141 Identities=23% Similarity=0.162 Sum_probs=90.3
Q ss_pred cCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccC---Cc-c--cccccEEEeecCCCCcccCCCCC---Cc
Q 041335 188 ACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSL---PE-L--PLCLKSLDLMDCKILQSLPALPL---CL 258 (594)
Q Consensus 188 ~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~l---P~-i--~~~L~~L~L~~c~~l~~lp~~~~---~L 258 (594)
..+++|++|++++|.+...... ..+++|++|++++|. +..+ |. + .++|+.|++++|. +..+|..+. +|
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L 398 (570)
T 2z63_A 322 LKLKSLKRLTFTSNKGGNAFSE-VDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQL 398 (570)
T ss_dssp CBCSSCCEEEEESCBSCCBCCC-CBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTC
T ss_pred ccccccCEEeCcCCcccccccc-ccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCc-cccccccccccCCC
Confidence 3567788888888876644333 677888888888765 4433 22 2 2578888888876 444554333 78
Q ss_pred cEEEeeCCCCCCcCC----CCCCCccEEeeecCCCCCCchhhh---cccccccccccccc-cccCcc---cccccccccc
Q 041335 259 ESLALTGCNMLRSIP----ELPLCLKYLNLEDCNMLRSLPELS---LCLQSLNARNCNRL-RSLPEI---PSCLQELDAS 327 (594)
Q Consensus 259 ~~L~Ls~c~~l~~lp----~~~~~L~~L~Ls~c~~~~~L~~l~---~~L~~L~L~~c~~L-~~lp~l---~~sL~~L~~~ 327 (594)
++|++++|...+..| ..+++|+.|++++|.+.+.++... .+|+.|+|++|... +.+|.. +++|+.|+++
T Consensus 399 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~ 478 (570)
T 2z63_A 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478 (570)
T ss_dssp CEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred CEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECC
Confidence 888888765444333 234678888888887766554332 16788888887654 356653 5677778887
Q ss_pred cccc
Q 041335 328 VLEK 331 (594)
Q Consensus 328 ~c~~ 331 (594)
+|..
T Consensus 479 ~n~l 482 (570)
T 2z63_A 479 QCQL 482 (570)
T ss_dssp TSCC
T ss_pred CCcc
Confidence 7753
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.76 E-value=1.8e-08 Score=97.60 Aligned_cols=54 Identities=24% Similarity=0.381 Sum_probs=24.8
Q ss_pred CccEEEEeCCCCCccCc--cccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCC
Q 041335 192 SLTGLHLSGNNFESLPA--SIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCK 246 (594)
Q Consensus 192 ~L~~L~l~~~~l~~lP~--~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~ 246 (594)
.+++|++++|.++.+++ .|+.+++|++|+|++|. +..++. +. ++|+.|+|++|.
T Consensus 33 ~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 33 YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc-CCEECHHHhCCCCCCCEEECCCCc
Confidence 34455555555554422 24555555555555443 333332 22 345555555544
No 107
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=98.76 E-value=1.9e-08 Score=108.61 Aligned_cols=143 Identities=24% Similarity=0.300 Sum_probs=109.1
Q ss_pred cCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCccc--ccccEEEeecCCCCcccCCCCC--CccEE
Q 041335 186 EIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPELP--LCLKSLDLMDCKILQSLPALPL--CLESL 261 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~i~--~~L~~L~L~~c~~l~~lp~~~~--~L~~L 261 (594)
.++.+++|+.|++++|.++.++ .+..+++|++|++++|. +..++.+. ++|+.|++++|. +..+|.... +|+.|
T Consensus 216 ~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L 292 (466)
T 1o6v_A 216 PLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQ-ISNLAPLSGLTKLTELKLGANQ-ISNISPLAGLTALTNL 292 (466)
T ss_dssp GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC-CCCCGGGTTCTTCSEEECCSSC-CCCCGGGTTCTTCSEE
T ss_pred cccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCc-cccchhhhcCCCCCEEECCCCc-cCccccccCCCccCeE
Confidence 3677889999999999999885 68899999999999876 55565533 689999999987 455554222 89999
Q ss_pred EeeCCCCCCcCC--CCCCCccEEeeecCCCCCCchhhh-cccccccccccccccccCcc--cccccccccccccccC
Q 041335 262 ALTGCNMLRSIP--ELPLCLKYLNLEDCNMLRSLPELS-LCLQSLNARNCNRLRSLPEI--PSCLQELDASVLEKLS 333 (594)
Q Consensus 262 ~Ls~c~~l~~lp--~~~~~L~~L~Ls~c~~~~~L~~l~-~~L~~L~L~~c~~L~~lp~l--~~sL~~L~~~~c~~L~ 333 (594)
++++|. +..++ ..+++|+.|+|++|.+.+..+... .+|+.|++++| .++.++.+ +++|+.|++++|....
T Consensus 293 ~L~~n~-l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~ 367 (466)
T 1o6v_A 293 ELNENQ-LEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQISD 367 (466)
T ss_dssp ECCSSC-CSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCB
T ss_pred EcCCCc-ccCchhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCCccCc
Confidence 999975 44454 345889999999999887655211 28999999997 55666654 6789999999886433
No 108
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=98.75 E-value=2.4e-08 Score=112.89 Aligned_cols=123 Identities=22% Similarity=0.220 Sum_probs=92.4
Q ss_pred cCcCCCCccEEEEeCCCCCcc-CccccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccC-CCCC---
Q 041335 186 EIACLSSLTGLHLSGNNFESL-PASIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLP-ALPL--- 256 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~~l-P~~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp-~~~~--- 256 (594)
.+..+++|++|++++|.++.+ |..|+++++|++|+|++|. +..+|. +. ++|++|++++|. +..+| ..+.
T Consensus 44 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~ 121 (680)
T 1ziw_A 44 NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVKQK 121 (680)
T ss_dssp GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTTCT
T ss_pred HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc-cCccChhhhccCCCCCEEECCCCc-cCccChhHccccC
Confidence 578888999999999988866 5678889999999999875 777775 44 689999999887 45555 4444
Q ss_pred CccEEEeeCCCCCCcCCCC---CCCccEEeeecCCCCCCchhhh-----ccccccccccccc
Q 041335 257 CLESLALTGCNMLRSIPEL---PLCLKYLNLEDCNMLRSLPELS-----LCLQSLNARNCNR 310 (594)
Q Consensus 257 ~L~~L~Ls~c~~l~~lp~~---~~~L~~L~Ls~c~~~~~L~~l~-----~~L~~L~L~~c~~ 310 (594)
+|++|+|++|...+..|.. +++|+.|++++|.+.+..+... .+|+.|++++|..
T Consensus 122 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l 183 (680)
T 1ziw_A 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI 183 (680)
T ss_dssp TCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred CCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence 8999999987665555543 4789999999988876544321 2788899988743
No 109
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.75 E-value=8.5e-09 Score=93.13 Aligned_cols=99 Identities=27% Similarity=0.370 Sum_probs=64.9
Q ss_pred CCCccEEEEeCCCCC--ccCccccCCCCCcEEEccCCCCCccCCccc--ccccEEEeecCCCCcccCCCCC---CccEEE
Q 041335 190 LSSLTGLHLSGNNFE--SLPASIKQLSQLSSLDLKDCKMLQSLPELP--LCLKSLDLMDCKILQSLPALPL---CLESLA 262 (594)
Q Consensus 190 L~~L~~L~l~~~~l~--~lP~~~~~l~~L~~L~Ls~c~~l~~lP~i~--~~L~~L~L~~c~~l~~lp~~~~---~L~~L~ 262 (594)
.++|+.|++++|.++ .+|..++.+++|++|++++|. +..++.+. ++|+.|++++|.....+|..+. +|++|+
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 468999999999998 889888999999999999875 55554443 5777777777764333554332 566666
Q ss_pred eeCCCCCCcCC--C---CCCCccEEeeecCCCC
Q 041335 263 LTGCNMLRSIP--E---LPLCLKYLNLEDCNML 290 (594)
Q Consensus 263 Ls~c~~l~~lp--~---~~~~L~~L~Ls~c~~~ 290 (594)
+++|. +..+| . .+++|+.|++++|.+.
T Consensus 95 ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~l~ 126 (149)
T 2je0_A 95 LSGNK-IKDLSTIEPLKKLENLKSLDLFNCEVT 126 (149)
T ss_dssp CTTSC-CCSHHHHGGGGGCTTCCEEECTTCGGG
T ss_pred CCCCc-CCChHHHHHHhhCCCCCEEeCcCCccc
Confidence 66643 33332 1 2345555555555443
No 110
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.74 E-value=1.1e-09 Score=124.96 Aligned_cols=121 Identities=30% Similarity=0.306 Sum_probs=95.9
Q ss_pred ecccCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc-cc--ccccEEEeecCCCCcccCCCCC---
Q 041335 183 ILQEIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE-LP--LCLKSLDLMDCKILQSLPALPL--- 256 (594)
Q Consensus 183 ~l~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i~--~~L~~L~L~~c~~l~~lp~~~~--- 256 (594)
++..+..+++|++|+|++|.++.+|..|++|++|++|+|++|. +..+|. +. ++|+.|+|++|. +..+|..++
T Consensus 239 l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~-l~~lp~~~~~l~ 316 (727)
T 4b8c_D 239 ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDNM-VTTLPWEFGNLC 316 (727)
T ss_dssp CCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSSC-CCCCCSSTTSCT
T ss_pred CChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCCC-CCccChhhhcCC
Confidence 5667788999999999999999999999999999999999887 778988 65 699999999986 789999877
Q ss_pred CccEEEeeCCCCCCcCCCCCCC----ccEEeeecCCCCCCchhhhccccccccccc
Q 041335 257 CLESLALTGCNMLRSIPELPLC----LKYLNLEDCNMLRSLPELSLCLQSLNARNC 308 (594)
Q Consensus 257 ~L~~L~Ls~c~~l~~lp~~~~~----L~~L~Ls~c~~~~~L~~l~~~L~~L~L~~c 308 (594)
+|++|+|++|...+.+|..+.. +..|+|++|.+.+.+|. .|+.|+++++
T Consensus 317 ~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~---~l~~l~l~~n 369 (727)
T 4b8c_D 317 NLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH---ERRFIEINTD 369 (727)
T ss_dssp TCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---C---------
T ss_pred CccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc---ccceeEeecc
Confidence 8999999998877777765422 23478999999998886 5778888776
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.68 E-value=5e-08 Score=101.82 Aligned_cols=104 Identities=23% Similarity=0.236 Sum_probs=84.8
Q ss_pred cCc-CCCCccEEEEeCCCCCccCc-cccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCCCC---
Q 041335 186 EIA-CLSSLTGLHLSGNNFESLPA-SIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPALPL--- 256 (594)
Q Consensus 186 ~l~-~L~~L~~L~l~~~~l~~lP~-~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~~~--- 256 (594)
.+. .+++|++|++++|.++.+|+ .|..+++|++|+|++|. +..+|. +. ++|+.|+|++|......|..+.
T Consensus 58 ~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~ 136 (361)
T 2xot_A 58 WTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMA 136 (361)
T ss_dssp SSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred hhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcc
Confidence 455 89999999999999998874 69999999999999876 777765 43 6999999999884444455554
Q ss_pred CccEEEeeCCCCCCcCCCC-------CCCccEEeeecCCCCC
Q 041335 257 CLESLALTGCNMLRSIPEL-------PLCLKYLNLEDCNMLR 291 (594)
Q Consensus 257 ~L~~L~Ls~c~~l~~lp~~-------~~~L~~L~Ls~c~~~~ 291 (594)
+|++|+|++| .+..+|.. +++|+.|+|++|.+.+
T Consensus 137 ~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 137 QLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp TCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred cCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 8999999995 56667743 5889999999998775
No 112
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.68 E-value=2.6e-08 Score=92.76 Aligned_cols=102 Identities=20% Similarity=0.209 Sum_probs=71.4
Q ss_pred cCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCccc--ccccEEEeecCCCCcccCCCC-C---Ccc
Q 041335 186 EIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPELP--LCLKSLDLMDCKILQSLPALP-L---CLE 259 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~i~--~~L~~L~L~~c~~l~~lp~~~-~---~L~ 259 (594)
.+..+++|+.|++++|.++.+|......++|++|+|++|. +..++.+. ++|+.|++++|. +..+|..+ . +|+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLT 91 (176)
T ss_dssp EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCC
T ss_pred hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCC-CCcccccccCCCCCEEECCCCc-ccccCcchhhcCCCCC
Confidence 3456778999999999999886533334499999999875 66665544 588888888876 56677654 2 788
Q ss_pred EEEeeCCCCCCcCCC-----CCCCccEEeeecCCCC
Q 041335 260 SLALTGCNMLRSIPE-----LPLCLKYLNLEDCNML 290 (594)
Q Consensus 260 ~L~Ls~c~~l~~lp~-----~~~~L~~L~Ls~c~~~ 290 (594)
+|+|++|. ++.+|. .+++|+.|++++|.+.
T Consensus 92 ~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 92 ELILTNNS-LVELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp EEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred EEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCCC
Confidence 88888753 455664 2356777777766554
No 113
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.68 E-value=2.3e-09 Score=110.28 Aligned_cols=143 Identities=20% Similarity=0.201 Sum_probs=109.2
Q ss_pred CCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCcc-CCc-cc--ccccEEEeecCCCCcccCCCCC---CccEEEe
Q 041335 191 SSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQS-LPE-LP--LCLKSLDLMDCKILQSLPALPL---CLESLAL 263 (594)
Q Consensus 191 ~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~-lP~-i~--~~L~~L~L~~c~~l~~lp~~~~---~L~~L~L 263 (594)
+++++|++++|.+...+..+..+++|++|+|++|..... +|. +. ++|+.|++++|......|..+. +|++|+|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 689999999999998877788999999999999873323 565 33 6999999999975545555444 8999999
Q ss_pred eCCCCCCc--CCC---CCCCccEEeeecC-CCCCC-chhhh---c-ccccccccccc-cc--cccCcc---ccccccccc
Q 041335 264 TGCNMLRS--IPE---LPLCLKYLNLEDC-NMLRS-LPELS---L-CLQSLNARNCN-RL--RSLPEI---PSCLQELDA 326 (594)
Q Consensus 264 s~c~~l~~--lp~---~~~~L~~L~Ls~c-~~~~~-L~~l~---~-~L~~L~L~~c~-~L--~~lp~l---~~sL~~L~~ 326 (594)
++|..++. +|. .+++|+.|+|++| .+.+. ++... . +|+.|+|++|. .+ ..+|.. .++|+.|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 99976663 554 3589999999999 76652 44322 2 79999999986 34 334443 678999999
Q ss_pred ccccccC
Q 041335 327 SVLEKLS 333 (594)
Q Consensus 327 ~~c~~L~ 333 (594)
++|..++
T Consensus 230 ~~~~~l~ 236 (336)
T 2ast_B 230 SDSVMLK 236 (336)
T ss_dssp TTCTTCC
T ss_pred CCCCcCC
Confidence 9997654
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.67 E-value=5.1e-08 Score=94.43 Aligned_cols=106 Identities=18% Similarity=0.168 Sum_probs=84.5
Q ss_pred cCcCCCCccEEEEeCCCCCccCc-cccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCCCC---C
Q 041335 186 EIACLSSLTGLHLSGNNFESLPA-SIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPALPL---C 257 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~~lP~-~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~~~---~ 257 (594)
.+..+++|++|++++|.++.+|. .|+.+++|++|+|++|. +..+|. +. ++|+.|+|++|......|..+. +
T Consensus 52 ~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 130 (220)
T 2v70_A 52 IFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSS 130 (220)
T ss_dssp CGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTT
T ss_pred hhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc-cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCcc
Confidence 47889999999999999998876 79999999999999876 666665 44 6999999999885444455554 8
Q ss_pred ccEEEeeCCCCCCcCCCC---CCCccEEeeecCCCCCC
Q 041335 258 LESLALTGCNMLRSIPEL---PLCLKYLNLEDCNMLRS 292 (594)
Q Consensus 258 L~~L~Ls~c~~l~~lp~~---~~~L~~L~Ls~c~~~~~ 292 (594)
|++|+|++|...+..|.. +++|+.|+|++|++...
T Consensus 131 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 131 VRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 999999996544443544 47899999999987764
No 115
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.67 E-value=1.2e-07 Score=89.72 Aligned_cols=101 Identities=23% Similarity=0.296 Sum_probs=78.1
Q ss_pred CccEEEEeCCCCCccCcc--ccCCCCCcEEEccCCCCCccC-Cc-cc--ccccEEEeecCCCCcccCCC-CC---CccEE
Q 041335 192 SLTGLHLSGNNFESLPAS--IKQLSQLSSLDLKDCKMLQSL-PE-LP--LCLKSLDLMDCKILQSLPAL-PL---CLESL 261 (594)
Q Consensus 192 ~L~~L~l~~~~l~~lP~~--~~~l~~L~~L~Ls~c~~l~~l-P~-i~--~~L~~L~L~~c~~l~~lp~~-~~---~L~~L 261 (594)
+|++|++++|.++.+|.. |+.+++|++|+|++|. +..+ |. +. ++|+.|+|++|. +..++.. +. +|++|
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L 107 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTL 107 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEE
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCCCEE
Confidence 899999999999988764 8899999999999876 5555 55 44 689999999987 4555443 43 89999
Q ss_pred EeeCCCCCCcCCCC---CCCccEEeeecCCCCCCch
Q 041335 262 ALTGCNMLRSIPEL---PLCLKYLNLEDCNMLRSLP 294 (594)
Q Consensus 262 ~Ls~c~~l~~lp~~---~~~L~~L~Ls~c~~~~~L~ 294 (594)
+|++|...+..|.. +++|+.|+|++|.+.+..+
T Consensus 108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp ECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred ECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 99997655555644 4689999999998887544
No 116
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.65 E-value=5.1e-08 Score=89.85 Aligned_cols=106 Identities=25% Similarity=0.321 Sum_probs=83.7
Q ss_pred eecccCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc-c--cccccEEEeecCCCCcccC--CCCC
Q 041335 182 EILQEIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE-L--PLCLKSLDLMDCKILQSLP--ALPL 256 (594)
Q Consensus 182 ~~l~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i--~~~L~~L~L~~c~~l~~lp--~~~~ 256 (594)
.++..+..+++|++|++++|.++.+ ..++.+++|++|+|++|.....+|. + .++|+.|++++|. +..+| ..+.
T Consensus 40 ~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~ 117 (168)
T 2ell_A 40 KIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK-LKDISTLEPLK 117 (168)
T ss_dssp BCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSS-CCSSGGGGGGS
T ss_pred hHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCc-cCcchhHHHHh
Confidence 3555678899999999999999988 8899999999999999874444676 3 3799999999986 66665 3444
Q ss_pred ---CccEEEeeCCCCCCcCCC-------CCCCccEEeeecCCCC
Q 041335 257 ---CLESLALTGCNMLRSIPE-------LPLCLKYLNLEDCNML 290 (594)
Q Consensus 257 ---~L~~L~Ls~c~~l~~lp~-------~~~~L~~L~Ls~c~~~ 290 (594)
+|++|++++|. +..+|. .+++|+.|++++|...
T Consensus 118 ~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 118 KLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp SCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred cCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 89999999974 455554 3578888888887654
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.63 E-value=3.4e-08 Score=109.47 Aligned_cols=95 Identities=27% Similarity=0.356 Sum_probs=52.9
Q ss_pred CccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc-cc--ccccEEEeecCCCCcccCCCCC---CccEEEeeC
Q 041335 192 SLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE-LP--LCLKSLDLMDCKILQSLPALPL---CLESLALTG 265 (594)
Q Consensus 192 ~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i~--~~L~~L~L~~c~~l~~lp~~~~---~L~~L~Ls~ 265 (594)
.|++|++++|.++.+|. |+.+++|+.|+|++|. +..+|. +. ++|+.|+|++|. +..+| .++ +|++|+|++
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC-CCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCC-CCCCc-ccCCCCCCcEEECCC
Confidence 46666666666666665 6666666666666654 556665 33 466666666654 44455 333 566666655
Q ss_pred CCCCCcC--CCC---CCCccEEeeecCCCCC
Q 041335 266 CNMLRSI--PEL---PLCLKYLNLEDCNMLR 291 (594)
Q Consensus 266 c~~l~~l--p~~---~~~L~~L~Ls~c~~~~ 291 (594)
|. +..+ |.. +++|+.|+|++|++.+
T Consensus 518 N~-l~~~~~p~~l~~l~~L~~L~L~~N~l~~ 547 (567)
T 1dce_A 518 NR-LQQSAAIQPLVSCPRLVLLNLQGNSLCQ 547 (567)
T ss_dssp SC-CCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred CC-CCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence 43 2333 432 2455555555554443
No 118
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.61 E-value=1.2e-07 Score=89.77 Aligned_cols=98 Identities=24% Similarity=0.355 Sum_probs=75.2
Q ss_pred CCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCC-CCC---CccEEE
Q 041335 191 SSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPA-LPL---CLESLA 262 (594)
Q Consensus 191 ~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~-~~~---~L~~L~ 262 (594)
++|++|++++|.++.+|..|..+++|++|+|++|. +..++. +. ++|+.|+|++|. +..+|. .+. +|++|+
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~ 108 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLS 108 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEE
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEE
Confidence 48999999999999999899999999999999876 666664 44 689999999887 555554 343 888999
Q ss_pred eeCCCCCCcCCCC----CCCccEEeeecCCCCC
Q 041335 263 LTGCNMLRSIPEL----PLCLKYLNLEDCNMLR 291 (594)
Q Consensus 263 Ls~c~~l~~lp~~----~~~L~~L~Ls~c~~~~ 291 (594)
|++| .+..+|.. +++|+.|+|++|++..
T Consensus 109 L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 109 LHGN-DISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CCSS-CCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred CCCC-CCCeeChhhhhcCccccEEEeCCCCeec
Confidence 9885 45566642 4678888888887653
No 119
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.61 E-value=1.3e-07 Score=89.37 Aligned_cols=115 Identities=22% Similarity=0.200 Sum_probs=82.1
Q ss_pred ccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc---cc--ccccEEEeecCCCCcccCCCCC---CccEEEee
Q 041335 193 LTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE---LP--LCLKSLDLMDCKILQSLPALPL---CLESLALT 264 (594)
Q Consensus 193 L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~---i~--~~L~~L~L~~c~~l~~lp~~~~---~L~~L~Ls 264 (594)
-++++++++.++.+|..+.. +|++|+|++|. +..+|. +. ++|+.|+|++|......|..+. +|++|+|+
T Consensus 10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 86 (192)
T 1w8a_A 10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDNE-LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCCSSCCSCCCT--TCSEEECCSCC-CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEcCCCCcCcCccCCCC--CCCEEECCCCc-CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence 47899999999999987754 89999999875 666654 33 6899999999875444466555 89999999
Q ss_pred CCCCCCcCCCC---CCCccEEeeecCCCCCCchhhhc---cccccccccccc
Q 041335 265 GCNMLRSIPEL---PLCLKYLNLEDCNMLRSLPELSL---CLQSLNARNCNR 310 (594)
Q Consensus 265 ~c~~l~~lp~~---~~~L~~L~Ls~c~~~~~L~~l~~---~L~~L~L~~c~~ 310 (594)
+|...+..|.. +++|+.|+|++|.+.+..|.... +|+.|+|++|+.
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 96544333332 47888999998888765443221 566666666543
No 120
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.57 E-value=2.8e-07 Score=85.64 Aligned_cols=101 Identities=38% Similarity=0.431 Sum_probs=73.0
Q ss_pred CCccEEEEeCCCCCccCcc-ccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCCC-C---CccEE
Q 041335 191 SSLTGLHLSGNNFESLPAS-IKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPALP-L---CLESL 261 (594)
Q Consensus 191 ~~L~~L~l~~~~l~~lP~~-~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~~-~---~L~~L 261 (594)
++|++|++++|.++.+|.. |+.+++|++|+|++|. +..+|. +. ++|+.|++++|. +..+|... . +|++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCEE
Confidence 5788888888888877654 6788888888888764 666665 33 588888888876 55566543 2 78888
Q ss_pred EeeCCCCCCcCCCC----CCCccEEeeecCCCCCCch
Q 041335 262 ALTGCNMLRSIPEL----PLCLKYLNLEDCNMLRSLP 294 (594)
Q Consensus 262 ~Ls~c~~l~~lp~~----~~~L~~L~Ls~c~~~~~L~ 294 (594)
+|++| .+..+|.. +++|+.|+|++|++.+..+
T Consensus 106 ~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 106 ALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp ECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred ECcCC-cceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 88886 45566643 3678888888887776555
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.52 E-value=4.2e-07 Score=86.07 Aligned_cols=94 Identities=24% Similarity=0.311 Sum_probs=67.8
Q ss_pred ccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc-cc--ccccEEEeecCCCCcccCCC-CC---CccEEEeeC
Q 041335 193 LTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE-LP--LCLKSLDLMDCKILQSLPAL-PL---CLESLALTG 265 (594)
Q Consensus 193 L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i~--~~L~~L~L~~c~~l~~lp~~-~~---~L~~L~Ls~ 265 (594)
-++++++++.++.+|..+. ++|++|+|++|. +..+|. +. ++|+.|+|++|. +..++.. +. +|++|+|++
T Consensus 12 ~~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~-i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQ-FTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCCEEECCSSC-CCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEcCCCCCCcCCCCCC--CCCCEEECCCCc-CchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCC
Confidence 3678888999999997764 689999999765 778876 44 689999999877 5555543 33 788888888
Q ss_pred CCCCCcCCC-C---CCCccEEeeecCCCCC
Q 041335 266 CNMLRSIPE-L---PLCLKYLNLEDCNMLR 291 (594)
Q Consensus 266 c~~l~~lp~-~---~~~L~~L~Ls~c~~~~ 291 (594)
|. +..+|. . +++|+.|+|++|.+..
T Consensus 88 N~-l~~i~~~~f~~l~~L~~L~L~~N~l~~ 116 (193)
T 2wfh_A 88 NR-LRCIPPRTFDGLKSLRLLSLHGNDISV 116 (193)
T ss_dssp SC-CCBCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred Cc-cCEeCHHHhCCCCCCCEEECCCCCCCe
Confidence 54 444543 2 3677777777776653
No 122
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.48 E-value=3.4e-07 Score=101.90 Aligned_cols=144 Identities=25% Similarity=0.264 Sum_probs=80.5
Q ss_pred cCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCCCC---Cc
Q 041335 186 EIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPALPL---CL 258 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~~~---~L 258 (594)
.+..+.+|++|++..+....++..+..+++|+.++++++......+. +. .+|+.++++.|......|..+. +|
T Consensus 392 ~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L 471 (635)
T 4g8a_A 392 SDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL 471 (635)
T ss_dssp HHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC
T ss_pred chhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccccchhh
Confidence 44456677777777776666666677777777777776554443333 11 4666666666553333333222 66
Q ss_pred cEEEeeCCCCCCc-CCCC---CCCccEEeeecCCCCCCchhhhc---ccccccccccccccccCcc----cccccccccc
Q 041335 259 ESLALTGCNMLRS-IPEL---PLCLKYLNLEDCNMLRSLPELSL---CLQSLNARNCNRLRSLPEI----PSCLQELDAS 327 (594)
Q Consensus 259 ~~L~Ls~c~~l~~-lp~~---~~~L~~L~Ls~c~~~~~L~~l~~---~L~~L~L~~c~~L~~lp~l----~~sL~~L~~~ 327 (594)
+.|+|++|..... .|.. +++|+.|+|++|.+.+-.|.... +|+.|+|++| +++.+|.. +++|+.|+++
T Consensus 472 ~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls 550 (635)
T 4g8a_A 472 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYS 550 (635)
T ss_dssp CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGTTCTTCCEEECT
T ss_pred hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHhCCCCCCEEECC
Confidence 6666666654443 2322 35666666666666553332211 5666666664 44555432 3556666666
Q ss_pred ccc
Q 041335 328 VLE 330 (594)
Q Consensus 328 ~c~ 330 (594)
++.
T Consensus 551 ~N~ 553 (635)
T 4g8a_A 551 LNH 553 (635)
T ss_dssp TSC
T ss_pred CCc
Confidence 654
No 123
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.47 E-value=6.8e-07 Score=82.98 Aligned_cols=115 Identities=29% Similarity=0.272 Sum_probs=81.8
Q ss_pred CccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCCC-C---CccEEEe
Q 041335 192 SLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPALP-L---CLESLAL 263 (594)
Q Consensus 192 ~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~~-~---~L~~L~L 263 (594)
..+.++++++.++.+|..+ .++|+.|++++|. +..+|. +. ++|+.|++++|. +..+|... . +|++|+|
T Consensus 8 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l 83 (177)
T 2o6r_A 8 SGTEIRCNSKGLTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYL 83 (177)
T ss_dssp ETTEEECCSSCCSSCCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEecCCCCccCCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEEC
Confidence 4678899999999999765 4799999999876 667765 33 689999999986 66676643 3 8999999
Q ss_pred eCCCCCCcCCCC----CCCccEEeeecCCCCCCchhhh---cccccccccccccc
Q 041335 264 TGCNMLRSIPEL----PLCLKYLNLEDCNMLRSLPELS---LCLQSLNARNCNRL 311 (594)
Q Consensus 264 s~c~~l~~lp~~----~~~L~~L~Ls~c~~~~~L~~l~---~~L~~L~L~~c~~L 311 (594)
++|. +..+|.. +++|+.|+|++|.+.+-.+... .+|+.|+|++|+..
T Consensus 84 ~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 84 HENK-LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CSSC-CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCC-ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 9864 4555542 4788888888887764322211 15666666665443
No 124
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.45 E-value=1.4e-08 Score=106.74 Aligned_cols=38 Identities=24% Similarity=0.244 Sum_probs=18.0
Q ss_pred cCCCCccEEEEeCCCCCc-----cCccccCCCCCcEEEccCCC
Q 041335 188 ACLSSLTGLHLSGNNFES-----LPASIKQLSQLSSLDLKDCK 225 (594)
Q Consensus 188 ~~L~~L~~L~l~~~~l~~-----lP~~~~~l~~L~~L~Ls~c~ 225 (594)
..+++|++|++++|.+.. +|..+..+++|++|+|++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 344445555555554443 34444444555555555443
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.44 E-value=1.1e-07 Score=85.64 Aligned_cols=101 Identities=24% Similarity=0.269 Sum_probs=80.0
Q ss_pred ecccCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc-c--cccccEEEeecCCCCcccC--CCCC-
Q 041335 183 ILQEIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE-L--PLCLKSLDLMDCKILQSLP--ALPL- 256 (594)
Q Consensus 183 ~l~~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i--~~~L~~L~L~~c~~l~~lp--~~~~- 256 (594)
++..+..+++|++|++++|.++.+ ..++.+++|++|+|++|.....+|. + .++|+.|++++|. +..+| ..+.
T Consensus 34 ~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~ 111 (149)
T 2je0_A 34 LEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKK 111 (149)
T ss_dssp CCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSC-CCSHHHHGGGGG
T ss_pred HHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCc-CCChHHHHHHhh
Confidence 556778899999999999999988 7899999999999999874444777 3 3799999999987 55554 4444
Q ss_pred --CccEEEeeCCCCCCcCCC----C---CCCccEEeeec
Q 041335 257 --CLESLALTGCNMLRSIPE----L---PLCLKYLNLED 286 (594)
Q Consensus 257 --~L~~L~Ls~c~~l~~lp~----~---~~~L~~L~Ls~ 286 (594)
+|++|++++| .+..+|. . +++|+.|++++
T Consensus 112 l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 112 LENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCCC
Confidence 8999999997 4556665 1 47788887763
No 126
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.42 E-value=2.7e-07 Score=102.18 Aligned_cols=96 Identities=24% Similarity=0.238 Sum_probs=79.6
Q ss_pred cCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCccc--ccccEEEeecCCCCccc--CCCCC---Cc
Q 041335 186 EIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPELP--LCLKSLDLMDCKILQSL--PALPL---CL 258 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~i~--~~L~~L~L~~c~~l~~l--p~~~~---~L 258 (594)
.++.+++|++|++++|.++.+|..|+.+++|++|+|++|. ++.+|.+. ++|+.|+|++|. +..+ |..++ +|
T Consensus 458 ~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L 535 (567)
T 1dce_A 458 HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVDGVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRL 535 (567)
T ss_dssp CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTC
T ss_pred CccccccCcEeecCcccccccchhhhcCCCCCEEECCCCC-CCCCcccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCC
Confidence 4888999999999999999999999999999999999876 77788754 799999999987 5555 77776 89
Q ss_pred cEEEeeCCCCCCcCCCC-------CCCccEEee
Q 041335 259 ESLALTGCNMLRSIPEL-------PLCLKYLNL 284 (594)
Q Consensus 259 ~~L~Ls~c~~l~~lp~~-------~~~L~~L~L 284 (594)
+.|+|++|. +..+|.. +++|+.|++
T Consensus 536 ~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 536 VLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence 999999965 4444432 467777754
No 127
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.37 E-value=1.3e-06 Score=81.19 Aligned_cols=95 Identities=23% Similarity=0.210 Sum_probs=68.5
Q ss_pred ccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCC-c-cc--ccccEEEeecCCCCcccCCCC-C---CccEEEee
Q 041335 193 LTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLP-E-LP--LCLKSLDLMDCKILQSLPALP-L---CLESLALT 264 (594)
Q Consensus 193 L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP-~-i~--~~L~~L~L~~c~~l~~lp~~~-~---~L~~L~Ls 264 (594)
-+.++++++.++.+|..+. ++|++|+|++|. +..++ . +. ++|+.|+|++|. +..+|..+ . +|++|+|+
T Consensus 14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SSEEECCSSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECC
Confidence 4678888888888887764 788888888765 55553 3 43 578888888875 66677654 2 78888888
Q ss_pred CCCCCCcCCCC----CCCccEEeeecCCCCCC
Q 041335 265 GCNMLRSIPEL----PLCLKYLNLEDCNMLRS 292 (594)
Q Consensus 265 ~c~~l~~lp~~----~~~L~~L~Ls~c~~~~~ 292 (594)
+| .+..+|.. +++|+.|+|++|++...
T Consensus 90 ~N-~l~~l~~~~~~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 90 DN-HLKSIPRGAFDNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp SS-CCCCCCTTTTTTCTTCSEEECCSSCBCTT
T ss_pred CC-ccceeCHHHhccccCCCEEEeCCCCcccc
Confidence 85 45566653 47788888888877653
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.36 E-value=5.3e-09 Score=99.46 Aligned_cols=100 Identities=21% Similarity=0.191 Sum_probs=55.4
Q ss_pred cCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc-cc--ccccEEEeecCCCCcccCCCCC---Ccc
Q 041335 186 EIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE-LP--LCLKSLDLMDCKILQSLPALPL---CLE 259 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i~--~~L~~L~L~~c~~l~~lp~~~~---~L~ 259 (594)
.+..+++|++|++++|.++.+| .++.+++|++|++++|. +..+|. +. ++|+.|++++|. +..+|. +. +|+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~-l~~l~~-~~~l~~L~ 118 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ-IASLSG-IEKLVNLR 118 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE-CCCHHH-HHHHHHSS
T ss_pred HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc-CCcCCc-cccCCCCC
Confidence 4555666666666666666666 66666666666666653 555665 22 466666666654 444442 22 566
Q ss_pred EEEeeCCCCCCcCCC-----CCCCccEEeeecCCCC
Q 041335 260 SLALTGCNMLRSIPE-----LPLCLKYLNLEDCNML 290 (594)
Q Consensus 260 ~L~Ls~c~~l~~lp~-----~~~~L~~L~Ls~c~~~ 290 (594)
+|+|++|. +..+|. .+++|+.|++++|.+.
T Consensus 119 ~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 119 VLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp EEEESEEE-CCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred EEECCCCc-CCchhHHHHHhcCCCCCEEEecCCccc
Confidence 66666542 332221 2345555555555443
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.35 E-value=4e-07 Score=84.57 Aligned_cols=101 Identities=16% Similarity=0.217 Sum_probs=81.0
Q ss_pred ccCcCCC-CccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc-c-c--ccccEEEeecCCCCcccCC--CCC-
Q 041335 185 QEIACLS-SLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE-L-P--LCLKSLDLMDCKILQSLPA--LPL- 256 (594)
Q Consensus 185 ~~l~~L~-~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i-~--~~L~~L~L~~c~~l~~lp~--~~~- 256 (594)
+.+..+. +|++|++++|.++.+ ..++.+++|++|+|++|. +..+|. + . ++|+.|++++|. +..+|. .+.
T Consensus 35 ~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~l~~ 111 (176)
T 1a9n_A 35 ENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPDLTELILTNNS-LVELGDLDPLAS 111 (176)
T ss_dssp CCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGG
T ss_pred HHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCc-ccccCcchhhcCCCCCEEECCCCc-CCcchhhHhhhc
Confidence 3455555 999999999999988 689999999999999876 777775 3 3 799999999987 677876 444
Q ss_pred --CccEEEeeCCCCCCcCCCC-------CCCccEEeeecCCC
Q 041335 257 --CLESLALTGCNMLRSIPEL-------PLCLKYLNLEDCNM 289 (594)
Q Consensus 257 --~L~~L~Ls~c~~l~~lp~~-------~~~L~~L~Ls~c~~ 289 (594)
+|++|++++|. +..+|.. +++|+.|++++|..
T Consensus 112 l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 112 LKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 89999999965 4566753 47788888887754
No 130
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.34 E-value=1.8e-08 Score=95.77 Aligned_cols=121 Identities=17% Similarity=0.203 Sum_probs=89.8
Q ss_pred CccEEEEeCC--CCCccCccccCCCCCcEEEccCCCCCccCCccc--ccccEEEeecCCCCcccCCCCC---CccEEEee
Q 041335 192 SLTGLHLSGN--NFESLPASIKQLSQLSSLDLKDCKMLQSLPELP--LCLKSLDLMDCKILQSLPALPL---CLESLALT 264 (594)
Q Consensus 192 ~L~~L~l~~~--~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~i~--~~L~~L~L~~c~~l~~lp~~~~---~L~~L~Ls 264 (594)
.|+.+.+++. .++.+|..++.+++|++|+|++|. +..+|.+. ++|+.|++++|. +..+|..+. +|++|+|+
T Consensus 24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~-l~~l~~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~ 101 (198)
T 1ds9_A 24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKISSLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWIS 101 (198)
T ss_dssp TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEE-ESCCCCHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEE
T ss_pred chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCC-CccccccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECc
Confidence 5667777665 577888899999999999999875 77788644 799999999987 667887655 89999999
Q ss_pred CCCCCCcCCC--CCCCccEEeeecCCCCCC--chhhh--cccccccccccccccccC
Q 041335 265 GCNMLRSIPE--LPLCLKYLNLEDCNMLRS--LPELS--LCLQSLNARNCNRLRSLP 315 (594)
Q Consensus 265 ~c~~l~~lp~--~~~~L~~L~Ls~c~~~~~--L~~l~--~~L~~L~L~~c~~L~~lp 315 (594)
+| .+..+|. .+++|+.|+|++|.+.+- ++.+. .+|+.|++++|+.....|
T Consensus 102 ~N-~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 157 (198)
T 1ds9_A 102 YN-QIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYK 157 (198)
T ss_dssp EE-ECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHH
T ss_pred CC-cCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccc
Confidence 96 4555663 236899999999987651 11221 178888888876544433
No 131
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.33 E-value=8.2e-08 Score=100.87 Aligned_cols=60 Identities=22% Similarity=0.204 Sum_probs=29.5
Q ss_pred CcCCCCccEEEEeCCCCC----ccCccc-------cCCCCCcEEEccCCCCCc----cCCc-cc--ccccEEEeecCC
Q 041335 187 IACLSSLTGLHLSGNNFE----SLPASI-------KQLSQLSSLDLKDCKMLQ----SLPE-LP--LCLKSLDLMDCK 246 (594)
Q Consensus 187 l~~L~~L~~L~l~~~~l~----~lP~~~-------~~l~~L~~L~Ls~c~~l~----~lP~-i~--~~L~~L~L~~c~ 246 (594)
+..+++|++|++++|.+. .+|..+ ..+++|++|+|++|..-. .+|. +. ++|+.|+|++|.
T Consensus 56 l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~ 133 (386)
T 2ca6_A 56 IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133 (386)
T ss_dssp TTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred HHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence 445556666666655433 223222 455666666666554222 1333 22 456666666655
No 132
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.30 E-value=3.1e-06 Score=78.20 Aligned_cols=97 Identities=30% Similarity=0.310 Sum_probs=70.6
Q ss_pred CccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccC-Cc-cc--ccccEEEeecCCCCcccCCCCC----CccEEEe
Q 041335 192 SLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSL-PE-LP--LCLKSLDLMDCKILQSLPALPL----CLESLAL 263 (594)
Q Consensus 192 ~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~l-P~-i~--~~L~~L~L~~c~~l~~lp~~~~----~L~~L~L 263 (594)
..+.|+++++.++.+|..+. ++|++|+|++|. +..+ |. +. ++|+.|+|++|. +..+|.... +|++|+|
T Consensus 10 ~~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 10 SGTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp ETTEEECTTSCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEEeCCCCcCccCccCC--CCCcEEEcCCCc-CCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEEC
Confidence 45788888888888887763 788888888765 5555 33 43 588888888876 666776542 7888888
Q ss_pred eCCCCCCcCCCC----CCCccEEeeecCCCCCCc
Q 041335 264 TGCNMLRSIPEL----PLCLKYLNLEDCNMLRSL 293 (594)
Q Consensus 264 s~c~~l~~lp~~----~~~L~~L~Ls~c~~~~~L 293 (594)
++| .+..+|.. +++|+.|+|++|.+...-
T Consensus 86 ~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c 118 (170)
T 3g39_A 86 NDN-QLKSIPRGAFDNLKSLTHIWLLNNPWDCAC 118 (170)
T ss_dssp CSS-CCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred CCC-ccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence 885 45566642 478899999998876543
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.21 E-value=2.1e-07 Score=97.02 Aligned_cols=40 Identities=30% Similarity=0.385 Sum_probs=20.0
Q ss_pred cCcCCC-CccEEEEeCCCCCcc-CccccCC-----CCCcEEEccCCC
Q 041335 186 EIACLS-SLTGLHLSGNNFESL-PASIKQL-----SQLSSLDLKDCK 225 (594)
Q Consensus 186 ~l~~L~-~L~~L~l~~~~l~~l-P~~~~~l-----~~L~~L~Ls~c~ 225 (594)
.+..++ +|++|++++|.++.. +..+..+ ++|++|+|++|.
T Consensus 45 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~ 91 (362)
T 3goz_A 45 AFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF 91 (362)
T ss_dssp HHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC
T ss_pred HHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc
Confidence 344455 555555555555533 2333332 555566665554
No 134
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.20 E-value=3.4e-06 Score=78.35 Aligned_cols=82 Identities=27% Similarity=0.345 Sum_probs=67.4
Q ss_pred ecccCcCCCCccEEEEeCCCCCcc-CccccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCC-CC
Q 041335 183 ILQEIACLSSLTGLHLSGNNFESL-PASIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPAL-PL 256 (594)
Q Consensus 183 ~l~~l~~L~~L~~L~l~~~~l~~l-P~~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~-~~ 256 (594)
+|..+. ++|++|++++|.++.+ |..|+.+++|++|+|++|. +..+|. +. ++|+.|+|++|. +..+|.. +.
T Consensus 27 iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~ 102 (174)
T 2r9u_A 27 VPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGAFD 102 (174)
T ss_dssp CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTT
T ss_pred cCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCc-cceeCHHHhc
Confidence 444443 6999999999999988 5679999999999999875 888887 33 699999999987 6778875 43
Q ss_pred ---CccEEEeeCCCC
Q 041335 257 ---CLESLALTGCNM 268 (594)
Q Consensus 257 ---~L~~L~Ls~c~~ 268 (594)
+|++|+|++|..
T Consensus 103 ~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 103 NLKSLTHIYLYNNPW 117 (174)
T ss_dssp TCTTCSEEECCSSCB
T ss_pred cccCCCEEEeCCCCc
Confidence 899999999753
No 135
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.15 E-value=4.8e-06 Score=76.94 Aligned_cols=77 Identities=30% Similarity=0.354 Sum_probs=64.9
Q ss_pred CCccEEEEeCCCCCcc-CccccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCC-CC---CccEE
Q 041335 191 SSLTGLHLSGNNFESL-PASIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPAL-PL---CLESL 261 (594)
Q Consensus 191 ~~L~~L~l~~~~l~~l-P~~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~-~~---~L~~L 261 (594)
++|++|++++|.++.+ |..|+.+++|++|+|++|. +..+|. +. ++|+.|+|++|. +..+|.. +. +|++|
T Consensus 30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L 107 (170)
T 3g39_A 30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQ-LKSIPRGAFDNLKSLTHI 107 (170)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCCc-cCEeCHHHhcCCCCCCEE
Confidence 6899999999999988 5679999999999999876 778876 33 699999999987 6777765 43 89999
Q ss_pred EeeCCCCC
Q 041335 262 ALTGCNML 269 (594)
Q Consensus 262 ~Ls~c~~l 269 (594)
+|++|...
T Consensus 108 ~L~~N~~~ 115 (170)
T 3g39_A 108 WLLNNPWD 115 (170)
T ss_dssp ECCSSCBC
T ss_pred EeCCCCCC
Confidence 99997543
No 136
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.11 E-value=5.6e-07 Score=93.73 Aligned_cols=138 Identities=22% Similarity=0.184 Sum_probs=89.3
Q ss_pred CCccEEEEeCCCCCccCcc-----ccCC-CCCcEEEccCCCCCccCCc--c-------cccccEEEeecCCCCc----cc
Q 041335 191 SSLTGLHLSGNNFESLPAS-----IKQL-SQLSSLDLKDCKMLQSLPE--L-------PLCLKSLDLMDCKILQ----SL 251 (594)
Q Consensus 191 ~~L~~L~l~~~~l~~lP~~-----~~~l-~~L~~L~Ls~c~~l~~lP~--i-------~~~L~~L~L~~c~~l~----~l 251 (594)
++|++|++++|.++..+.. +..+ ++|++|+|++|. ++..+. + +++|+.|+|++|.... .+
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l 158 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL 158 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence 7889999999988755432 4555 789999999876 555543 2 2488999998886432 22
Q ss_pred CCC---C-CCccEEEeeCCCCCCcCCC--------CCCCccEEeeecCCCCC----Cchhh----hcccccccccccccc
Q 041335 252 PAL---P-LCLESLALTGCNMLRSIPE--------LPLCLKYLNLEDCNMLR----SLPEL----SLCLQSLNARNCNRL 311 (594)
Q Consensus 252 p~~---~-~~L~~L~Ls~c~~l~~lp~--------~~~~L~~L~Ls~c~~~~----~L~~l----~~~L~~L~L~~c~~L 311 (594)
+.. . .+|++|+|++|......+. .+++|+.|+|++|.+.+ .++.. ..+|+.|+|++| .+
T Consensus 159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l 237 (362)
T 3goz_A 159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CL 237 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CC
T ss_pred HHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC-CC
Confidence 221 1 2788999988753322221 12588999999888765 13321 126888888886 34
Q ss_pred cccCc--------cccccccccccccc
Q 041335 312 RSLPE--------IPSCLQELDASVLE 330 (594)
Q Consensus 312 ~~lp~--------l~~sL~~L~~~~c~ 330 (594)
+..+. ..++|+.|++++|.
T Consensus 238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 238 HGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp CCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred CcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 44332 24668888888775
No 137
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.08 E-value=2.8e-07 Score=98.73 Aligned_cols=104 Identities=17% Similarity=0.256 Sum_probs=52.6
Q ss_pred CcCCCCccEEEEeCCCCC-----ccCccccCCCCCcEEEccCCCCCcc-CCc-cc---c----cccEEEeecCCCCc---
Q 041335 187 IACLSSLTGLHLSGNNFE-----SLPASIKQLSQLSSLDLKDCKMLQS-LPE-LP---L----CLKSLDLMDCKILQ--- 249 (594)
Q Consensus 187 l~~L~~L~~L~l~~~~l~-----~lP~~~~~l~~L~~L~Ls~c~~l~~-lP~-i~---~----~L~~L~L~~c~~l~--- 249 (594)
+..+++|++|++++|.++ .+|..+..+++|++|+|++|. +.. .+. +. . +|+.|++++|....
T Consensus 24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~ 102 (461)
T 1z7x_W 24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC 102 (461)
T ss_dssp HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHH
Confidence 344556666666666665 345556666666666666654 322 111 11 1 46666666665321
Q ss_pred -ccCCCCC---CccEEEeeCCCCCCc----C----CCCCCCccEEeeecCCCCC
Q 041335 250 -SLPALPL---CLESLALTGCNMLRS----I----PELPLCLKYLNLEDCNMLR 291 (594)
Q Consensus 250 -~lp~~~~---~L~~L~Ls~c~~l~~----l----p~~~~~L~~L~Ls~c~~~~ 291 (594)
.+|..+. +|++|+|++|..... + ....++|+.|+|++|.+.+
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 156 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSA 156 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCH
Confidence 2343333 566666666542111 0 1112346666666665544
No 138
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.07 E-value=8.5e-06 Score=83.99 Aligned_cols=94 Identities=23% Similarity=0.223 Sum_probs=55.1
Q ss_pred EEEEeCC-CCCccCccccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCC-CC---CccEEEeeC
Q 041335 195 GLHLSGN-NFESLPASIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPAL-PL---CLESLALTG 265 (594)
Q Consensus 195 ~L~l~~~-~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~-~~---~L~~L~Ls~ 265 (594)
.++.+++ .++.+|. +..+++|++|+|+++..+..+|. +. ++|+.|+|++|. +..+|.. +. +|++|+|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCS
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCC
Confidence 3455555 5666666 66666666666665334555553 33 466666666664 4444433 22 677777776
Q ss_pred CCCCCcCCCCC---CCccEEeeecCCCCC
Q 041335 266 CNMLRSIPELP---LCLKYLNLEDCNMLR 291 (594)
Q Consensus 266 c~~l~~lp~~~---~~L~~L~Ls~c~~~~ 291 (594)
| .+..+|... .+|+.|+|.+|++..
T Consensus 90 N-~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 N-ALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp S-CCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred C-ccceeCHHHcccCCceEEEeeCCCccC
Confidence 3 445555432 237888888777654
No 139
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.02 E-value=8e-06 Score=84.17 Aligned_cols=83 Identities=22% Similarity=0.323 Sum_probs=70.1
Q ss_pred ecccCcCCCCccEEEEeC-CCCCccC-ccccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCCCC
Q 041335 183 ILQEIACLSSLTGLHLSG-NNFESLP-ASIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPALPL 256 (594)
Q Consensus 183 ~l~~l~~L~~L~~L~l~~-~~l~~lP-~~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~~~ 256 (594)
+|. +..+++|++|+|++ |.++.+| ..|+.|++|++|+|++|. +..+|. +. ++|+.|+|++|. +..+|..+.
T Consensus 24 ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~ 100 (347)
T 2ifg_A 24 LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTV 100 (347)
T ss_dssp TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTT
T ss_pred cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCc-cceeCHHHc
Confidence 666 88899999999997 9999887 579999999999999886 766665 44 699999999987 778887665
Q ss_pred ---CccEEEeeCCCC
Q 041335 257 ---CLESLALTGCNM 268 (594)
Q Consensus 257 ---~L~~L~Ls~c~~ 268 (594)
.|+.|+|.+|..
T Consensus 101 ~~~~L~~l~l~~N~~ 115 (347)
T 2ifg_A 101 QGLSLQELVLSGNPL 115 (347)
T ss_dssp CSCCCCEEECCSSCC
T ss_pred ccCCceEEEeeCCCc
Confidence 699999998653
No 140
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=97.98 E-value=2.8e-07 Score=98.77 Aligned_cols=146 Identities=25% Similarity=0.290 Sum_probs=98.8
Q ss_pred cccCcCCCCccEEEEeCCCCCcc------CccccCCCCCcEEEccCCCCCcc-----CCc-cc--ccccEEEeecCCCCc
Q 041335 184 LQEIACLSSLTGLHLSGNNFESL------PASIKQLSQLSSLDLKDCKMLQS-----LPE-LP--LCLKSLDLMDCKILQ 249 (594)
Q Consensus 184 l~~l~~L~~L~~L~l~~~~l~~l------P~~~~~l~~L~~L~Ls~c~~l~~-----lP~-i~--~~L~~L~L~~c~~l~ 249 (594)
+..+..+++|++|++++|.+... +..+..+++|++|+|++|. ++. +|. +. ++|+.|++++|..-.
T Consensus 220 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~ 298 (461)
T 1z7x_W 220 CGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGD 298 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHH
T ss_pred HHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCch
Confidence 34566788999999999987743 3334468899999999884 555 454 32 689999999986322
Q ss_pred c----cCCC----CCCccEEEeeCCCCCCc----CCCC---CCCccEEeeecCCCCCCc-hhh-------hccccccccc
Q 041335 250 S----LPAL----PLCLESLALTGCNMLRS----IPEL---PLCLKYLNLEDCNMLRSL-PEL-------SLCLQSLNAR 306 (594)
Q Consensus 250 ~----lp~~----~~~L~~L~Ls~c~~l~~----lp~~---~~~L~~L~Ls~c~~~~~L-~~l-------~~~L~~L~L~ 306 (594)
. +... ..+|++|+|++|..... +|.. .++|+.|+|++|.+.+.- ..+ ..+|+.|+|+
T Consensus 299 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~ 378 (461)
T 1z7x_W 299 EGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLA 378 (461)
T ss_dssp HHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECC
Confidence 1 2211 12799999999864332 2322 378999999999776521 111 1279999999
Q ss_pred cccccc----ccCcc---ccccccccccccc
Q 041335 307 NCNRLR----SLPEI---PSCLQELDASVLE 330 (594)
Q Consensus 307 ~c~~L~----~lp~l---~~sL~~L~~~~c~ 330 (594)
+|..-. .+|.. .++|++|++++|.
T Consensus 379 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 379 DCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp TSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred CCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 975332 55654 5778999998874
No 141
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.88 E-value=8.8e-07 Score=98.08 Aligned_cols=57 Identities=21% Similarity=0.271 Sum_probs=25.8
Q ss_pred CCCccEEEEeCCCCCc-cCcccc-CCCCCcEEEccCCCCCcc--CCcc---cccccEEEeecCC
Q 041335 190 LSSLTGLHLSGNNFES-LPASIK-QLSQLSSLDLKDCKMLQS--LPEL---PLCLKSLDLMDCK 246 (594)
Q Consensus 190 L~~L~~L~l~~~~l~~-lP~~~~-~l~~L~~L~Ls~c~~l~~--lP~i---~~~L~~L~L~~c~ 246 (594)
+++|++|++++|.++. .+..+. .+++|++|+|++|..+.. ++.+ .++|+.|++++|.
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~ 167 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD 167 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc
Confidence 4455555555555441 122222 345555555555543332 2221 1455555555554
No 142
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.87 E-value=1.8e-05 Score=81.03 Aligned_cols=32 Identities=13% Similarity=0.161 Sum_probs=19.1
Q ss_pred CCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCC
Q 041335 213 LSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCK 246 (594)
Q Consensus 213 l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~ 246 (594)
+++|+.|+|.+ .++.++. +. ++|+.|++.++.
T Consensus 100 ~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n~ 135 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKKT 135 (329)
T ss_dssp CTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCSS
T ss_pred cCCCcEEECCc--cccchhHHHhhcCcccceEEcCCCC
Confidence 67777777764 4666665 32 467777776654
No 143
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=97.80 E-value=2.3e-06 Score=94.69 Aligned_cols=140 Identities=24% Similarity=0.324 Sum_probs=94.7
Q ss_pred CcCCCCccEEEEeCCC-CCc---cCcc------------ccCCCCCcEEEccCCCCCccCCc-c---cccccEEEeecCC
Q 041335 187 IACLSSLTGLHLSGNN-FES---LPAS------------IKQLSQLSSLDLKDCKMLQSLPE-L---PLCLKSLDLMDCK 246 (594)
Q Consensus 187 l~~L~~L~~L~l~~~~-l~~---lP~~------------~~~l~~L~~L~Ls~c~~l~~lP~-i---~~~L~~L~L~~c~ 246 (594)
+..+++|+.|++++++ +.. .|.. ...+++|++|+|++|......+. + .++|+.|++++|.
T Consensus 62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~ 141 (594)
T 2p1m_B 62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE 141 (594)
T ss_dssp HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence 3456789999999986 221 2221 24688999999999863322232 3 2699999999996
Q ss_pred CCcc--cCCCC---CCccEEEeeCCCC-------CCcCCCCCCCccEEeeecCC--CC-CCchhh---hccccccccccc
Q 041335 247 ILQS--LPALP---LCLESLALTGCNM-------LRSIPELPLCLKYLNLEDCN--ML-RSLPEL---SLCLQSLNARNC 308 (594)
Q Consensus 247 ~l~~--lp~~~---~~L~~L~Ls~c~~-------l~~lp~~~~~L~~L~Ls~c~--~~-~~L~~l---~~~L~~L~L~~c 308 (594)
.+.. ++... .+|++|+|++|.. +..++...++|+.|+|++|. +. ..++.+ ..+|+.|+|++|
T Consensus 142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 5544 33332 2899999999862 33445566899999999997 21 122222 138999999999
Q ss_pred ccccccCcc---ccccccccc
Q 041335 309 NRLRSLPEI---PSCLQELDA 326 (594)
Q Consensus 309 ~~L~~lp~l---~~sL~~L~~ 326 (594)
..++.+|.. .++|+.|++
T Consensus 222 ~~~~~l~~~~~~~~~L~~L~l 242 (594)
T 2p1m_B 222 VPLEKLATLLQRAPQLEELGT 242 (594)
T ss_dssp SCHHHHHHHHHHCTTCSEEEC
T ss_pred CcHHHHHHHHhcCCcceEccc
Confidence 777666654 466777754
No 144
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.60 E-value=1.9e-05 Score=87.23 Aligned_cols=12 Identities=17% Similarity=0.055 Sum_probs=6.3
Q ss_pred CCccEEeeecCC
Q 041335 277 LCLKYLNLEDCN 288 (594)
Q Consensus 277 ~~L~~L~Ls~c~ 288 (594)
++|++|+|++|.
T Consensus 293 ~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 293 AQIRKLDLLYAL 304 (592)
T ss_dssp GGCCEEEETTCC
T ss_pred CCCcEEecCCCc
Confidence 345555555555
No 145
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=97.53 E-value=2e-05 Score=87.09 Aligned_cols=59 Identities=15% Similarity=0.121 Sum_probs=25.8
Q ss_pred CcCCCCccEEEEeCCCCC----ccCccccCCCCCcEEEccCCCCCccCCc-c--cccccEEEeecCC
Q 041335 187 IACLSSLTGLHLSGNNFE----SLPASIKQLSQLSSLDLKDCKMLQSLPE-L--PLCLKSLDLMDCK 246 (594)
Q Consensus 187 l~~L~~L~~L~l~~~~l~----~lP~~~~~l~~L~~L~Ls~c~~l~~lP~-i--~~~L~~L~L~~c~ 246 (594)
+..+++|+.|+++.+... ..+..+..+++|+.|+++++ ....+|. + .++|+.|++++|.
T Consensus 239 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 239 FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYM-GPNEMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTC-CTTTGGGGGGGGGGCCEEEETTCC
T ss_pred HhhhhHHHhhcccccccccchHHHHHHhhccccccccCcccc-chhHHHHHHhhcCCCcEEecCCCc
Confidence 444555666666543211 22334444455555555442 1233333 1 1345555555544
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.40 E-value=0.00026 Score=72.32 Aligned_cols=41 Identities=15% Similarity=0.189 Sum_probs=27.9
Q ss_pred CCCccEEEEeCCCCCccCc-cccCCCCCcEEEccCCCCCccCCc
Q 041335 190 LSSLTGLHLSGNNFESLPA-SIKQLSQLSSLDLKDCKMLQSLPE 232 (594)
Q Consensus 190 L~~L~~L~l~~~~l~~lP~-~~~~l~~L~~L~Ls~c~~l~~lP~ 232 (594)
+++|+.|++.. .++.++. .|.++++|+.|++++|. +..++.
T Consensus 100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~ 141 (329)
T 3sb4_A 100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKT-APNLLP 141 (329)
T ss_dssp CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSS-CCEECT
T ss_pred cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCC-ccccch
Confidence 77888888877 7777754 47788888888887654 334443
No 147
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.33 E-value=0.0002 Score=66.26 Aligned_cols=58 Identities=10% Similarity=0.266 Sum_probs=39.7
Q ss_pred CCccEEEEeCCCCCcc-CccccCCCCCcEEEccCCCCCccCCc--cc------ccccEEEeecCCCC
Q 041335 191 SSLTGLHLSGNNFESL-PASIKQLSQLSSLDLKDCKMLQSLPE--LP------LCLKSLDLMDCKIL 248 (594)
Q Consensus 191 ~~L~~L~l~~~~l~~l-P~~~~~l~~L~~L~Ls~c~~l~~lP~--i~------~~L~~L~L~~c~~l 248 (594)
.+|+.|++++|.++.. -..+..+++|+.|+|++|..++.--- +. ++|+.|+|++|..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~I 127 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNV 127 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcC
Confidence 3799999999987732 24567899999999999987654211 21 25666666666544
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.25 E-value=0.00011 Score=76.50 Aligned_cols=122 Identities=20% Similarity=0.237 Sum_probs=68.4
Q ss_pred cCcCCCCccEEEEeCCCCC----------ccCccccCCCCCcEEEccCCCCCccCCcc-cccccEEEeecCCCCccc---
Q 041335 186 EIACLSSLTGLHLSGNNFE----------SLPASIKQLSQLSSLDLKDCKMLQSLPEL-PLCLKSLDLMDCKILQSL--- 251 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~----------~lP~~~~~l~~L~~L~Ls~c~~l~~lP~i-~~~L~~L~L~~c~~l~~l--- 251 (594)
.+..+++|+.|.+...... .++..+..+++|+.|+|++|..+ .+|.+ .++|+.|+|..|..-...
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~~~~~~L~~L~L~~~~l~~~~l~~ 212 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGKKPRPNLKSLEIISGGLPDSVVED 212 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCSCBCTTCSEEEEECSBCCHHHHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eeccccCCCCcEEEEecCCCChHHHHH
Confidence 3455678888887654321 24444567788888888877433 34443 368888888876532111
Q ss_pred -C-CCCCCccEEEeeCCCC-------CCc----CC-CCCCCccEEeeecCCCCCCchhh------hccccccccccc
Q 041335 252 -P-ALPLCLESLALTGCNM-------LRS----IP-ELPLCLKYLNLEDCNMLRSLPEL------SLCLQSLNARNC 308 (594)
Q Consensus 252 -p-~~~~~L~~L~Ls~c~~-------l~~----lp-~~~~~L~~L~Ls~c~~~~~L~~l------~~~L~~L~L~~c 308 (594)
- ....+|++|+|+.+.. +.. +. ..+++|+.|+|++|.+....... ..+|+.|+|+.|
T Consensus 213 l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n 289 (362)
T 2ra8_A 213 ILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289 (362)
T ss_dssp HHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS
T ss_pred HHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC
Confidence 0 0122688888763211 111 11 13578888888888765422110 116777777653
No 149
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.21 E-value=0.00023 Score=65.91 Aligned_cols=57 Identities=19% Similarity=0.261 Sum_probs=27.2
Q ss_pred CCCccEEeeecCCCCC--Cchhhh------cccccccccccccccc-----cCcccccccccccccccccC
Q 041335 276 PLCLKYLNLEDCNMLR--SLPELS------LCLQSLNARNCNRLRS-----LPEIPSCLQELDASVLEKLS 333 (594)
Q Consensus 276 ~~~L~~L~Ls~c~~~~--~L~~l~------~~L~~L~L~~c~~L~~-----lp~l~~sL~~L~~~~c~~L~ 333 (594)
+++|+.|+|++|...+ .+..+. .+|+.|+|++|.+++. +.. .++|+.|++++|+.++
T Consensus 84 ~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~-~~~L~~L~L~~c~~It 153 (176)
T 3e4g_A 84 LQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH-FRNLKYLFLSDLPGVK 153 (176)
T ss_dssp CSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG-CTTCCEEEEESCTTCC
T ss_pred CCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc-CCCCCEEECCCCCCCC
Confidence 3556666666665332 122211 1466666666665544 111 2445555555554443
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.16 E-value=9.8e-06 Score=84.84 Aligned_cols=137 Identities=22% Similarity=0.209 Sum_probs=75.2
Q ss_pred CCccEEEEeCCCCCcc-----Ccccc-CCCCCcEEEccCCCCCccC--Cccc---ccccEEEeecCCCCcc----cCC--
Q 041335 191 SSLTGLHLSGNNFESL-----PASIK-QLSQLSSLDLKDCKMLQSL--PELP---LCLKSLDLMDCKILQS----LPA-- 253 (594)
Q Consensus 191 ~~L~~L~l~~~~l~~l-----P~~~~-~l~~L~~L~Ls~c~~l~~l--P~i~---~~L~~L~L~~c~~l~~----lp~-- 253 (594)
++|++|++++|.++.. ...+. ..++|+.|+|++|. +... ..+. .+|+.|+|++|..-.. +..
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4677888888877632 12222 23678888888765 3221 1122 4677888887753221 111
Q ss_pred --CCCCccEEEeeCCCCCCc-----CC---CCCCCccEEeeecCCCCCC----chhh---hcccccccccccccccc---
Q 041335 254 --LPLCLESLALTGCNMLRS-----IP---ELPLCLKYLNLEDCNMLRS----LPEL---SLCLQSLNARNCNRLRS--- 313 (594)
Q Consensus 254 --~~~~L~~L~Ls~c~~l~~-----lp---~~~~~L~~L~Ls~c~~~~~----L~~l---~~~L~~L~L~~c~~L~~--- 313 (594)
...+|++|+|++|. ++. ++ ...++|++|+|++|.+.+. +... ..+|+.|+|++|. ++.
T Consensus 151 ~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~~g~ 228 (372)
T 3un9_A 151 LHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNG-AGDTAA 228 (372)
T ss_dssp HSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSC-CCHHHH
T ss_pred HhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCC-CCHHHH
Confidence 11267888888764 322 22 1235688888888776531 1110 1167788887764 332
Q ss_pred --cCcc---ccccccccccccc
Q 041335 314 --LPEI---PSCLQELDASVLE 330 (594)
Q Consensus 314 --lp~l---~~sL~~L~~~~c~ 330 (594)
++.. .++|++|++++|.
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSS
T ss_pred HHHHHHHHhCCCCCEEeccCCC
Confidence 2221 3567778877764
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.11 E-value=0.0038 Score=65.71 Aligned_cols=70 Identities=14% Similarity=0.231 Sum_probs=34.7
Q ss_pred CccEEEEeCCCCCccC-ccccCCCCCcEEEccCCCCCccCCc--cc-ccccEEEeecCCCCcccCCCCC----CccEEEe
Q 041335 192 SLTGLHLSGNNFESLP-ASIKQLSQLSSLDLKDCKMLQSLPE--LP-LCLKSLDLMDCKILQSLPALPL----CLESLAL 263 (594)
Q Consensus 192 ~L~~L~l~~~~l~~lP-~~~~~l~~L~~L~Ls~c~~l~~lP~--i~-~~L~~L~L~~c~~l~~lp~~~~----~L~~L~L 263 (594)
+|+.+.+.. .++.++ ..|.++++|+.++|++| .+..+|. +. .+|+.+.+.. .+..++.... +|+.+.|
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEEC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEec
Confidence 455555553 444443 34556666666666543 3555554 21 4555555542 2444444333 4555555
Q ss_pred eC
Q 041335 264 TG 265 (594)
Q Consensus 264 s~ 265 (594)
..
T Consensus 234 ~~ 235 (401)
T 4fdw_A 234 PE 235 (401)
T ss_dssp CT
T ss_pred CC
Confidence 43
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.81 E-value=0.00089 Score=69.55 Aligned_cols=102 Identities=15% Similarity=0.133 Sum_probs=65.8
Q ss_pred CcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCC--cc----cccccEEEeecCCC-------CcccCC
Q 041335 187 IACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLP--EL----PLCLKSLDLMDCKI-------LQSLPA 253 (594)
Q Consensus 187 l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP--~i----~~~L~~L~L~~c~~-------l~~lp~ 253 (594)
+..+|+|+.|.++++.-..+|. +. +++|++|+|..|. +..-. .+ .++|+.|+|+.+.+ +..+..
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 4567899999999884235554 43 8999999998765 32111 12 26899999864211 111111
Q ss_pred -----CCCCccEEEeeCCCCCCcCC------CCCCCccEEeeecCCCCC
Q 041335 254 -----LPLCLESLALTGCNMLRSIP------ELPLCLKYLNLEDCNMLR 291 (594)
Q Consensus 254 -----~~~~L~~L~Ls~c~~l~~lp------~~~~~L~~L~Ls~c~~~~ 291 (594)
...+|++|+|.+|......+ ..+++|+.|+|+.|.+.+
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 12289999999876532211 245789999999887654
No 153
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=96.71 E-value=7.8e-05 Score=77.93 Aligned_cols=116 Identities=17% Similarity=0.139 Sum_probs=72.8
Q ss_pred CCccEEEEeCCCCCc--cCccccCCCCCcEEEccCCCCCccCCc--c-------cccccEEEeecCCCCcc-----cCCC
Q 041335 191 SSLTGLHLSGNNFES--LPASIKQLSQLSSLDLKDCKMLQSLPE--L-------PLCLKSLDLMDCKILQS-----LPAL 254 (594)
Q Consensus 191 ~~L~~L~l~~~~l~~--lP~~~~~l~~L~~L~Ls~c~~l~~lP~--i-------~~~L~~L~L~~c~~l~~-----lp~~ 254 (594)
++|++|++++|.+.. +..-...+++|+.|+|++|. ++.... + .++|+.|+|++|. +.. ++..
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~ 178 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEG 178 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHHHHhcCCccceeeCCCCC-CChHHHHHHHHH
Confidence 578888998888763 22222345678889998875 433221 2 1578889998886 332 2221
Q ss_pred ---CCCccEEEeeCCCCCCc-----CC---CCCCCccEEeeecCCCCC----Cchhh---hcccccccccccc
Q 041335 255 ---PLCLESLALTGCNMLRS-----IP---ELPLCLKYLNLEDCNMLR----SLPEL---SLCLQSLNARNCN 309 (594)
Q Consensus 255 ---~~~L~~L~Ls~c~~l~~-----lp---~~~~~L~~L~Ls~c~~~~----~L~~l---~~~L~~L~L~~c~ 309 (594)
..+|++|+|++|. ++. ++ ...++|+.|+|++|.+.. .+... ..+|+.|+|++|+
T Consensus 179 L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 179 LAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 1278899998875 332 11 123679999999988764 12211 1278889998864
No 154
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.12 E-value=0.0032 Score=62.34 Aligned_cols=14 Identities=29% Similarity=0.551 Sum_probs=7.6
Q ss_pred CCCCCcEEEccCCC
Q 041335 212 QLSQLSSLDLKDCK 225 (594)
Q Consensus 212 ~l~~L~~L~Ls~c~ 225 (594)
++++|+.|+|++|.
T Consensus 168 ~l~~L~~L~Ls~N~ 181 (267)
T 3rw6_A 168 NIPELLSLNLSNNR 181 (267)
T ss_dssp HCTTCCEEECTTSC
T ss_pred hCCCCCEEECCCCC
Confidence 45555555555543
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=95.78 E-value=0.0012 Score=61.64 Aligned_cols=60 Identities=17% Similarity=0.148 Sum_probs=42.5
Q ss_pred cCcCCCCccEEEEeCC-CCC-----ccCccccCCCCCcEEEccCCCCCccC-----Cc-cc--ccccEEEeecCC
Q 041335 186 EIACLSSLTGLHLSGN-NFE-----SLPASIKQLSQLSSLDLKDCKMLQSL-----PE-LP--LCLKSLDLMDCK 246 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~-~l~-----~lP~~~~~l~~L~~L~Ls~c~~l~~l-----P~-i~--~~L~~L~L~~c~ 246 (594)
.+...+.|+.|++++| .+. .+...+...++|++|+|++|. +..- .. +. ++|+.|+|++|.
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 4556778999999998 876 345566778899999999876 4321 11 11 478888888776
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=95.62 E-value=0.036 Score=58.14 Aligned_cols=88 Identities=23% Similarity=0.322 Sum_probs=43.0
Q ss_pred CccEEEEeCCCCCccCc-cccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCCCC---CccEEEe
Q 041335 192 SLTGLHLSGNNFESLPA-SIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPALPL---CLESLAL 263 (594)
Q Consensus 192 ~L~~L~l~~~~l~~lP~-~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~~~---~L~~L~L 263 (594)
+|+.+.+..+ ++.++. .|.+ .+|+.+.|.. .+..++. +. .+|+.+++.++. +..+|.... +|+.+.|
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~l 210 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLL 210 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT--TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEEC
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC--CccEehHHHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEe
Confidence 4555555443 444432 3444 3466666653 3555544 22 456666665533 555555443 5566655
Q ss_pred eCCCCCCcCCCC----CCCccEEeeec
Q 041335 264 TGCNMLRSIPEL----PLCLKYLNLED 286 (594)
Q Consensus 264 s~c~~l~~lp~~----~~~L~~L~Ls~ 286 (594)
.. .++.++.. .++|+.++|..
T Consensus 211 p~--~l~~I~~~aF~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 211 PV--TLKEIGSQAFLKTSQLKTIEIPE 235 (401)
T ss_dssp CT--TCCEECTTTTTTCTTCCCEECCT
T ss_pred CC--chheehhhHhhCCCCCCEEecCC
Confidence 42 24444432 23455555543
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=92.10 E-value=0.019 Score=53.19 Aligned_cols=40 Identities=15% Similarity=0.211 Sum_probs=32.0
Q ss_pred cCcCCCCccEEEEeCCCCCc-----cCccccCCCCCcEEEccCCC
Q 041335 186 EIACLSSLTGLHLSGNNFES-----LPASIKQLSQLSSLDLKDCK 225 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~~-----lP~~~~~l~~L~~L~Ls~c~ 225 (594)
.+...++|++|++++|.+.. +...+...++|++|+|++|.
T Consensus 60 ~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~ 104 (185)
T 1io0_A 60 ALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF 104 (185)
T ss_dssp HHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred HHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence 45566789999999999873 45556677899999999876
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=91.64 E-value=0.15 Score=50.33 Aligned_cols=12 Identities=33% Similarity=0.299 Sum_probs=6.8
Q ss_pred ccccEEEeecCC
Q 041335 235 LCLKSLDLMDCK 246 (594)
Q Consensus 235 ~~L~~L~L~~c~ 246 (594)
++|+.|+|++|.
T Consensus 170 ~~L~~L~Ls~N~ 181 (267)
T 3rw6_A 170 PELLSLNLSNNR 181 (267)
T ss_dssp TTCCEEECTTSC
T ss_pred CCCCEEECCCCC
Confidence 355666666554
No 159
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=91.55 E-value=0.21 Score=43.30 Aligned_cols=14 Identities=14% Similarity=0.003 Sum_probs=8.0
Q ss_pred CCccEEeeecCCCC
Q 041335 277 LCLKYLNLEDCNML 290 (594)
Q Consensus 277 ~~L~~L~Ls~c~~~ 290 (594)
++|+.|+|++|.+.
T Consensus 55 ~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 55 PALRTAHLGANPWR 68 (130)
T ss_dssp TTCCEEECCSSCCB
T ss_pred cccCEEEecCCCee
Confidence 45566666666543
No 160
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=87.88 E-value=0.74 Score=39.79 Aligned_cols=48 Identities=29% Similarity=0.339 Sum_probs=30.6
Q ss_pred EEEccCCCCCc--cCCc-ccccccEEEeecCCCCcccCCCCC----CccEEEeeCCC
Q 041335 218 SLDLKDCKMLQ--SLPE-LPLCLKSLDLMDCKILQSLPALPL----CLESLALTGCN 267 (594)
Q Consensus 218 ~L~Ls~c~~l~--~lP~-i~~~L~~L~L~~c~~l~~lp~~~~----~L~~L~Ls~c~ 267 (594)
.++.++ ..++ .+|. ++.+|+.|+|++|. +..+|.... +|+.|+|++|.
T Consensus 12 ~v~Cs~-~~L~~~~vP~~lp~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGR-RGLTWASLPTAFPVDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCS-SCCCTTTSCSCCCTTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCC-CCCccccCCCCCCcCCCEEECCCCc-CCccChhhhhhccccCEEEecCCC
Confidence 455554 3355 7776 66777777777765 666666543 67777777654
No 161
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=87.75 E-value=1.7 Score=43.51 Aligned_cols=111 Identities=16% Similarity=0.160 Sum_probs=64.8
Q ss_pred HHHHHHHHHhCCChHHHHHHHccCC-CHHHHHHHHHHhhhhcCCChhhHHHHHHHhhcCCCHhHHhHhhhhccccCCCCh
Q 041335 21 RDSRRVVKYADGNPLVLKVLGSSLK-RKSHWGNVLDDLNRICESDIHNIYDILKISFNELTPRVKSIFLDIACFFEGEDK 99 (594)
Q Consensus 21 ~l~~~iv~~c~GlPLAlkvlgs~L~-~~~~W~~~l~~l~~~~~~~i~~~~~~L~~Syd~L~~~~K~~Fl~~a~Fp~~~~~ 99 (594)
+...+|++.++|.|+++..++..+. ....| ..+..+.......+. .++-.+.++ ++..+.++..+|+ .....
T Consensus 226 ~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~l~~l~~~--~~~~~~~l~~la~--g~~~~ 298 (350)
T 2qen_A 226 NEIEEAVELLDGIPGWLVVFGVEYLRNGDFG-RAMKRTLEVAKGLIM--GELEELRRR--SPRYVDILRAIAL--GYNRW 298 (350)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHH--HHHHHHHHH--CHHHHHHHHHHHT--TCCSH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhccccHh-HHHHHHHHHHHHHHH--HHHHHHHhC--ChhHHHHHHHHHh--CCCCH
Confidence 4667899999999999999987543 11111 111111111000010 111112222 7888999999998 22344
Q ss_pred hHHHHHhh----h----hhhhhhhHHhhcCCceecccCCCCeEEec-HHHHH
Q 041335 100 DFLARILD----D----SESDGLDVLIDKSLISISEKWADKLLQMH-DILQE 142 (594)
Q Consensus 100 ~~v~~~l~----~----~~~~~i~~Lv~~sli~~~~~~~~~~~~mH-dLl~~ 142 (594)
..+...+. + ....+++.|++.++|... ++.++++ .++++
T Consensus 299 ~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~----~~~y~~~~p~~~~ 346 (350)
T 2qen_A 299 SLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEE----DNTYKIADPVVAT 346 (350)
T ss_dssp HHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE----TTEEEESSHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEec----CCEEEEecHHHHH
Confidence 55655541 1 455778999999999876 5677764 45554
No 162
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=86.18 E-value=2.2 Score=42.65 Aligned_cols=107 Identities=15% Similarity=0.041 Sum_probs=65.8
Q ss_pred HHHHHHhCCChHHHHHHHccCC---CHHHHHHHHHHhhhhcCCChhhHHHHHH-Hhhc--CCCHhHHhHhhhhccccCCC
Q 041335 24 RRVVKYADGNPLVLKVLGSSLK---RKSHWGNVLDDLNRICESDIHNIYDILK-ISFN--ELTPRVKSIFLDIACFFEGE 97 (594)
Q Consensus 24 ~~iv~~c~GlPLAlkvlgs~L~---~~~~W~~~l~~l~~~~~~~i~~~~~~L~-~Syd--~L~~~~K~~Fl~~a~Fp~~~ 97 (594)
.+|++.++|.|+++..++..+. +..+|-. .+-.... ..+...+. +.++ .|++..|..+..+|+- .
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~~~l~~~~~~~~~l~~~~~~~l~~la~g--~- 303 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFIYLDNKNLDFAIN---QTLEYAK---KLILKEFENFLHGREIARKRYLNIMRTLSKC--G- 303 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHH---HHHHHHH---HHHHHHHHHHHTTCGGGHHHHHHHHHHHTTC--B-
T ss_pred HHHHHHhCCCHHHHHHHHHHHccccchHHHHH---HHHHHHH---HHHHHHHHHHhhccccccHHHHHHHHHHHcC--C-
Confidence 6899999999999999987764 3333321 1111000 00111121 2221 6788999999999982 2
Q ss_pred ChhHHHHHh----h-----hhhhhhhhHHhhcCCceecccCCCCeEEe-cHHHHHH
Q 041335 98 DKDFLARIL----D-----DSESDGLDVLIDKSLISISEKWADKLLQM-HDILQEM 143 (594)
Q Consensus 98 ~~~~v~~~l----~-----~~~~~~i~~Lv~~sli~~~~~~~~~~~~m-HdLl~~~ 143 (594)
..+.+...+ . .....+++.|+++++|... ++.+++ |.++++.
T Consensus 304 ~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~~gli~~~----~~~y~f~~~~~~~~ 355 (357)
T 2fna_A 304 KWSDVKRALELEEGIEISDSEIYNYLTQLTKHSWIIKE----GEKYCPSEPLISLA 355 (357)
T ss_dssp CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHTTSEEES----SSCEEESSHHHHHH
T ss_pred CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEec----CCEEEecCHHHHHh
Confidence 555555322 1 1445678999999999876 466774 6677653
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=82.34 E-value=4.8 Score=40.90 Aligned_cols=132 Identities=14% Similarity=0.278 Sum_probs=77.9
Q ss_pred cCcCCCCccEEEEeCCCCCcc-CccccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCCCC----
Q 041335 186 EIACLSSLTGLHLSGNNFESL-PASIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPALPL---- 256 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~~l-P~~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~~~---- 256 (594)
.+....+|+.+.+..+ ++.+ ...|.++..|+.+.+.. .+..++. +. .+|+.+.+.. .+..++....
T Consensus 212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~ 286 (379)
T 4h09_A 212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCS 286 (379)
T ss_dssp TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCT
T ss_pred ccccccccceeeeccc-eeEEccccccCCccceEEEcCC--CccEeCccccceeehhccccccc--cceecccccccccc
Confidence 4455667777777544 4444 34567788888888874 3666665 22 4788887754 3666666544
Q ss_pred CccEEEeeCCCCCCcCCCC----CCCccEEeeecCCCCCCchhhhcccccccccccccccccCcccccccccc---cccc
Q 041335 257 CLESLALTGCNMLRSIPEL----PLCLKYLNLEDCNMLRSLPELSLCLQSLNARNCNRLRSLPEIPSCLQELD---ASVL 329 (594)
Q Consensus 257 ~L~~L~Ls~c~~l~~lp~~----~~~L~~L~Ls~c~~~~~L~~l~~~L~~L~L~~c~~L~~lp~l~~sL~~L~---~~~c 329 (594)
+|+.+.+.+ +.++.+++. ..+|+.+.|..+ +..+. .--..+|..|+++ .+|.+++.+. ..+|
T Consensus 287 ~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~-------~~aF~~C~~L~~i-~ip~~v~~I~~~aF~~c 355 (379)
T 4h09_A 287 NLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPTA--LKTIQ-------VYAFKNCKALSTI-SYPKSITLIESGAFEGS 355 (379)
T ss_dssp TCCEEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEEC-------TTTTTTCTTCCCC-CCCTTCCEECTTTTTTS
T ss_pred ccccccccc-cccceehhhhhcCCCCCCEEEcCcc--ccEEH-------HHHhhCCCCCCEE-EECCccCEEchhHhhCC
Confidence 788888875 456666643 367888877532 12222 2234567777664 1244444443 4577
Q ss_pred cccC
Q 041335 330 EKLS 333 (594)
Q Consensus 330 ~~L~ 333 (594)
..++
T Consensus 356 ~~~~ 359 (379)
T 4h09_A 356 SITK 359 (379)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 5443
No 164
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=81.48 E-value=1.7 Score=44.84 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=22.7
Q ss_pred cCcCCCCccEEEEeCCCCCccC-ccccCCCCCcEEEccC
Q 041335 186 EIACLSSLTGLHLSGNNFESLP-ASIKQLSQLSSLDLKD 223 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~~lP-~~~~~l~~L~~L~Ls~ 223 (594)
.|..+++|+.+.+..+ ++.++ ..|.++.+|+.+.+..
T Consensus 157 aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~ 194 (394)
T 4fs7_A 157 AFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPR 194 (394)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCT
T ss_pred hhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCC
Confidence 4666677777777543 33343 3466677777777653
No 165
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=80.06 E-value=16 Score=36.89 Aligned_cols=115 Identities=17% Similarity=0.234 Sum_probs=59.5
Q ss_pred ccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCCCC----CccEEEeeCCCCCCcCCCC----CC
Q 041335 210 IKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPALPL----CLESLALTGCNMLRSIPEL----PL 277 (594)
Q Consensus 210 ~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~~~----~L~~L~Ls~c~~l~~lp~~----~~ 277 (594)
+....+|+.+.+.. .+..++. +. ..|+.+.+..+ +..+..... +|+.+.+.. .+..++.. ..
T Consensus 213 f~~~~~l~~i~~~~--~~~~i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~ 286 (379)
T 4h09_A 213 FSYGKNLKKITITS--GVTTLGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCS 286 (379)
T ss_dssp TTTCSSCSEEECCT--TCCEECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCT
T ss_pred cccccccceeeecc--ceeEEccccccCCccceEEEcCCC--ccEeCccccceeehhccccccc--cceecccccccccc
Confidence 34455566665542 2444443 11 46666666542 455544433 677777753 35555543 36
Q ss_pred CccEEeeecCCCCCCchhhhccccccccccccccccc--CcccccccccccccccccCCCCcc
Q 041335 278 CLKYLNLEDCNMLRSLPELSLCLQSLNARNCNRLRSL--PEIPSCLQELDASVLEKLSKPSLD 338 (594)
Q Consensus 278 ~L~~L~Ls~c~~~~~L~~l~~~L~~L~L~~c~~L~~l--p~l~~sL~~L~~~~c~~L~~~~~~ 338 (594)
+|+.+.+.++.+. .++. =-..+|..|+++ |.....+..--..+|.+|+++..+
T Consensus 287 ~L~~i~l~~~~i~-~I~~-------~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 287 NLTKVVMDNSAIE-TLEP-------RVFMDCVKLSSVTLPTALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TCCEEEECCTTCC-EECT-------TTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCCCCCC
T ss_pred ccccccccccccc-eehh-------hhhcCCCCCCEEEcCccccEEHHHHhhCCCCCCEEEEC
Confidence 7888877655332 1221 123455555543 322222333335688888887654
No 166
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=79.77 E-value=5.2 Score=41.02 Aligned_cols=149 Identities=15% Similarity=0.177 Sum_probs=78.8
Q ss_pred CCCCccEEEEeCCCCCcc-CccccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCCCC----Ccc
Q 041335 189 CLSSLTGLHLSGNNFESL-PASIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPALPL----CLE 259 (594)
Q Consensus 189 ~L~~L~~L~l~~~~l~~l-P~~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~~~----~L~ 259 (594)
...+|+.+.+... ++.+ ...|..+..|+.+.+..+ ...++. +. ..|+.+.+... .++.... +|+
T Consensus 228 ~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~~~~----~i~~~~F~~~~~L~ 300 (394)
T 4fs7_A 228 SKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIYGSV----IVPEKTFYGCSSLT 300 (394)
T ss_dssp TTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEECSS----EECTTTTTTCTTCC
T ss_pred ccCCCceEEECCC-ceecccccccccccceeEEcCCC--cceeeccccccccccceeccCce----eecccccccccccc
Confidence 3457777777543 3333 245677888888888743 344443 21 45666655442 2333322 788
Q ss_pred EEEeeCCCCCCcCCCC----CCCccEEeeecCCCCCCchhhhccccccccccccccccc--CcccccccccccccccccC
Q 041335 260 SLALTGCNMLRSIPEL----PLCLKYLNLEDCNMLRSLPELSLCLQSLNARNCNRLRSL--PEIPSCLQELDASVLEKLS 333 (594)
Q Consensus 260 ~L~Ls~c~~l~~lp~~----~~~L~~L~Ls~c~~~~~L~~l~~~L~~L~L~~c~~L~~l--p~l~~sL~~L~~~~c~~L~ 333 (594)
.+.+.. .++.+++. ..+|+.++|..+ ...+.. --..+|..|+.+ |.....+..=-..+|.+|+
T Consensus 301 ~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~-------~aF~~c~~L~~i~lp~~l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 301 EVKLLD--SVKFIGEEAFESCTSLVSIDLPYL--VEEIGK-------RSFRGCTSLSNINFPLSLRKIGANAFQGCINLK 369 (394)
T ss_dssp EEEECT--TCCEECTTTTTTCTTCCEECCCTT--CCEECT-------TTTTTCTTCCEECCCTTCCEECTTTBTTCTTCC
T ss_pred cccccc--ccceechhhhcCCCCCCEEEeCCc--ccEEhH-------HhccCCCCCCEEEECccccEehHHHhhCCCCCC
Confidence 887764 35566543 356777777532 222221 123455555543 2222222222456788888
Q ss_pred CCCcccccccCCCCCCCCceeeccCccccc
Q 041335 334 KPSLDLIQWAPGCLESQPIYFGFTKCLKLN 363 (594)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~l~~~nC~~L~ 363 (594)
++..+.. + ... ...|.+|.+|.
T Consensus 370 ~i~lp~~-~-----~~~--~~~F~~c~~L~ 391 (394)
T 4fs7_A 370 KVELPKR-L-----EQY--RYDFEDTTKFK 391 (394)
T ss_dssp EEEEEGG-G-----GGG--GGGBCTTCEEE
T ss_pred EEEECCC-C-----EEh--hheecCCCCCc
Confidence 7754421 0 111 23588898875
No 167
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=72.98 E-value=11 Score=38.52 Aligned_cols=10 Identities=20% Similarity=0.016 Sum_probs=3.0
Q ss_pred ccccccCCCC
Q 041335 327 SVLEKLSKPS 336 (594)
Q Consensus 327 ~~c~~L~~~~ 336 (594)
..|..|+.+.
T Consensus 375 ~~~~~L~~i~ 384 (394)
T 4gt6_A 375 STDSGLQNLP 384 (394)
T ss_dssp BCCCCC----
T ss_pred hccCCCCEEE
Confidence 3455555544
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=66.21 E-value=1.3 Score=41.42 Aligned_cols=55 Identities=13% Similarity=0.181 Sum_probs=33.0
Q ss_pred CCccEEEEeCC-CCC-----ccCccccCCCCCcEEEccCCCCCccCCc--cc------ccccEEEeecCC
Q 041335 191 SSLTGLHLSGN-NFE-----SLPASIKQLSQLSSLDLKDCKMLQSLPE--LP------LCLKSLDLMDCK 246 (594)
Q Consensus 191 ~~L~~L~l~~~-~l~-----~lP~~~~~l~~L~~L~Ls~c~~l~~lP~--i~------~~L~~L~L~~c~ 246 (594)
+.|+.|+|+++ .+. .+-..+..-+.|+.|+|++|. ++.--. +. +.|+.|+|++|.
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~N~ 109 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNF 109 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCCCc
Confidence 46888888875 554 233445556778888888765 332211 11 466777776655
No 169
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=56.05 E-value=14 Score=37.53 Aligned_cols=98 Identities=13% Similarity=-0.013 Sum_probs=55.6
Q ss_pred HHHHHHHHHhC------CChHHHHHHHccCC-----------CHHHHHHHHHHhhhhcCCChhhHHHHHHHhhcCCCHhH
Q 041335 21 RDSRRVVKYAD------GNPLVLKVLGSSLK-----------RKSHWGNVLDDLNRICESDIHNIYDILKISFNELTPRV 83 (594)
Q Consensus 21 ~l~~~iv~~c~------GlPLAlkvlgs~L~-----------~~~~W~~~l~~l~~~~~~~i~~~~~~L~~Syd~L~~~~ 83 (594)
+....|+++++ |.|..+..+..... +.+.+..++..... ...+.-.++.||..+
T Consensus 240 ~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~~---------~~~~~~~l~~l~~~~ 310 (412)
T 1w5s_A 240 RHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEA---------ASIQTHELEALSIHE 310 (412)
T ss_dssp HHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC---------------CCSSSSSCHHH
T ss_pred HHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc---------cchHHHHHHcCCHHH
Confidence 45677888888 99976555442210 22333333322110 133455678999999
Q ss_pred HhHhhhhccccC-C---CChhHHHH----Hh-hh---------hhhhhhhHHhhcCCceecc
Q 041335 84 KSIFLDIACFFE-G---EDKDFLAR----IL-DD---------SESDGLDVLIDKSLISISE 127 (594)
Q Consensus 84 K~~Fl~~a~Fp~-~---~~~~~v~~----~l-~~---------~~~~~i~~Lv~~sli~~~~ 127 (594)
|.++..+|.++. + .....+.. +. .. ....+++.|++.++|....
T Consensus 311 ~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 311 LIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp HHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEeec
Confidence 999999998652 2 12322221 21 11 2345688999999998753
No 170
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=55.50 E-value=12 Score=38.29 Aligned_cols=96 Identities=17% Similarity=0.291 Sum_probs=68.7
Q ss_pred cCcCCCCccEEEEeCCCCCccCccccCCCCCcEEEccCCCCCccCCc--cc--ccccEEEeecCCCCcccCCCCC----C
Q 041335 186 EIACLSSLTGLHLSGNNFESLPASIKQLSQLSSLDLKDCKMLQSLPE--LP--LCLKSLDLMDCKILQSLPALPL----C 257 (594)
Q Consensus 186 ~l~~L~~L~~L~l~~~~l~~lP~~~~~l~~L~~L~Ls~c~~l~~lP~--i~--~~L~~L~L~~c~~l~~lp~~~~----~ 257 (594)
.|..+..|+.+.+...-.+--...|.++++|+.+.+. ..+..++. +. .+|+.++|.. .+..+..... +
T Consensus 260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~--~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS--SRITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC--TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTT
T ss_pred eeeecccccEEecccccceecCcccccccccccccCC--CcccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCC
Confidence 4677788998888654333224567889999999996 45778877 33 5899998865 3677766544 7
Q ss_pred ccEEEeeCCCCCCcCCC----CCCCccEEeeecC
Q 041335 258 LESLALTGCNMLRSIPE----LPLCLKYLNLEDC 287 (594)
Q Consensus 258 L~~L~Ls~c~~l~~lp~----~~~~L~~L~Ls~c 287 (594)
|+.+.|.. .++.++. ...+|+.+++.++
T Consensus 336 L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 336 LERIAIPS--SVTKIPESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp CCEEEECT--TCCBCCGGGGTTCTTCCEEEESSC
T ss_pred CCEEEECc--ccCEEhHhHhhCCCCCCEEEECCc
Confidence 99999864 4667764 3478999988765
No 171
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=55.36 E-value=2.1 Score=39.87 Aligned_cols=36 Identities=11% Similarity=0.188 Sum_probs=18.6
Q ss_pred cCCCCCcEEEccCCCCCccCCc--cc------ccccEEEeecCC
Q 041335 211 KQLSQLSSLDLKDCKMLQSLPE--LP------LCLKSLDLMDCK 246 (594)
Q Consensus 211 ~~l~~L~~L~Ls~c~~l~~lP~--i~------~~L~~L~L~~c~ 246 (594)
.+-+.|+.|+|+++..+..-.. +. +.|+.|+|++|.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ 81 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA 81 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC
Confidence 3456677777776433432111 11 356666666654
No 172
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=40.67 E-value=1.1e+02 Score=30.11 Aligned_cols=123 Identities=14% Similarity=0.066 Sum_probs=68.2
Q ss_pred HHHHHHHhC---CCh-HHHHHHHccC---------C-CHHHHHHHHHHhhhhcCCChhhHHHHHHHhhcCCCHhHHhHhh
Q 041335 23 SRRVVKYAD---GNP-LVLKVLGSSL---------K-RKSHWGNVLDDLNRICESDIHNIYDILKISFNELTPRVKSIFL 88 (594)
Q Consensus 23 ~~~iv~~c~---GlP-LAlkvlgs~L---------~-~~~~W~~~l~~l~~~~~~~i~~~~~~L~~Syd~L~~~~K~~Fl 88 (594)
.+.++++++ |.| .|+.++.... . +.+.++.++.... ...+.-++.+|+..+|..++
T Consensus 228 ~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~----------~~~~~~~~~~l~~~~~~~l~ 297 (387)
T 2v1u_A 228 VPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIE----------RDRVSEVVRTLPLHAKLVLL 297 (387)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHH----------HHHHHHHHHSSCHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh----------hchHHHHHHcCCHHHHHHHH
Confidence 455667776 998 3333332221 1 4556666655432 23455678899999999988
Q ss_pred hhccccCCCC---hhHHHHHhhh-------------hhhhhhhHHhhcCCceecccC--CCCeEEecHHHHHHHHHHHhh
Q 041335 89 DIACFFEGED---KDFLARILDD-------------SESDGLDVLIDKSLISISEKW--ADKLLQMHDILQEMGREIVRQ 150 (594)
Q Consensus 89 ~~a~Fp~~~~---~~~v~~~l~~-------------~~~~~i~~Lv~~sli~~~~~~--~~~~~~mHdLl~~~~~~i~~~ 150 (594)
.++...+|.+ ...+.+.... .....++.|...+++...... ..++.
T Consensus 298 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~~~g~~g~~---------------- 361 (387)
T 2v1u_A 298 SIMMLEDGGRPASTGEIYERYKELTSTLGLEHVTLRRVSGIISELDMLGIVKSRVVSRGRYGKT---------------- 361 (387)
T ss_dssp HHHHHSSSSCCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEEEEECGGGCEE----------------
T ss_pred HHHHHhcCCCCCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCeEEEeecCCCCCce----------------
Confidence 8886655543 2222221111 333456667777777764210 01111
Q ss_pred ccccCCCCceecCCchhHHHHHhccCc
Q 041335 151 ESEKQPGKRSRLWDPKEIRRVLKQKRN 177 (594)
Q Consensus 151 e~~~~~~~~~~l~~~~~i~~vl~~~~~ 177 (594)
...+..|.++++..++..+..
T Consensus 362 ------~~~~l~~~~~~i~~~l~~~~~ 382 (387)
T 2v1u_A 362 ------REVSLDADRLAVENALSEDPF 382 (387)
T ss_dssp ------EEEEECSCHHHHHHHHHHSTT
T ss_pred ------eEEEecCCHHHHHHHHhccHh
Confidence 134456777888887776544
No 173
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=37.09 E-value=1.5e+02 Score=29.45 Aligned_cols=112 Identities=12% Similarity=0.080 Sum_probs=63.3
Q ss_pred hHHhhh---hcCCCCCChhHHHHHHHHHHHhC---CChH-HHHHHHccC-------C-CHHHHHHHHHHhhhhcCCChhh
Q 041335 3 EHFCNF---AFKENHCPEDFKRDSRRVVKYAD---GNPL-VLKVLGSSL-------K-RKSHWGNVLDDLNRICESDIHN 67 (594)
Q Consensus 3 ~LF~~~---AF~~~~~~~~~~~l~~~iv~~c~---GlPL-Alkvlgs~L-------~-~~~~W~~~l~~l~~~~~~~i~~ 67 (594)
+++.+. +|.....+++ ..+.++++++ |.|. |+.++-... . +.+.++.+++...
T Consensus 204 ~il~~~~~~~~~~~~~~~~---~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~--------- 271 (384)
T 2qby_B 204 FILSKYAEYGLIKGTYDDE---ILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDYE--------- 271 (384)
T ss_dssp HHHHHHHHHTSCTTSCCSH---HHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHH---------
T ss_pred HHHHHHHHhhcccCCcCHH---HHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh---------
Confidence 455554 4443333333 3445666666 8877 444443322 1 6777777776542
Q ss_pred HHHHHHHhhcCCCHhHHhHhhhhccccCCCCh-hHHHHHhhh---------hhhhhhhHHhhcCCceecc
Q 041335 68 IYDILKISFNELTPRVKSIFLDIACFFEGEDK-DFLARILDD---------SESDGLDVLIDKSLISISE 127 (594)
Q Consensus 68 ~~~~L~~Syd~L~~~~K~~Fl~~a~Fp~~~~~-~~v~~~l~~---------~~~~~i~~Lv~~sli~~~~ 127 (594)
...+.-++++|+..+|..+.-++....+-+. +....+... .....+..|.+++++....
T Consensus 272 -~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~~ 340 (384)
T 2qby_B 272 -QERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRFSDIISELDMFGIVKIRI 340 (384)
T ss_dssp -HHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred -cchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCEEEEe
Confidence 2446667889999999888877762221111 122222221 3345677899999998753
Done!