BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041336
(397 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4A2N|B Chain B, Crystal Structure Of Ma-Icmt
Length = 194
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 41/76 (53%)
Query: 317 VVQFGPYRWVRHPIYASTMLLFVTYCIALRAPLSLLFLVAVCLVYYEQKAKLEEALMVET 376
+V+ G Y+ +RHP+YA L +T I L + L+F + + Y + EE L++E
Sbjct: 115 LVKEGIYKNIRHPMYAHLWLWVITQGIILSNWVVLIFGIVAWAILYFIRVPKEEELLIEE 174
Query: 377 FGERYLEYASKVRHKF 392
FG+ Y+EY K F
Sbjct: 175 FGDEYIEYMGKTGRLF 190
>pdb|3LF7|A Chain A, Crystal Structure Of Fructosyltransferase (Wild-Type) From
A Japonicus
pdb|3LFI|A Chain A, Crystal Structure Of Fructosyltransferase (Wild-Type) From
A Japonicus In Complex With Glucose
pdb|3LFI|B Chain B, Crystal Structure Of Fructosyltransferase (Wild-Type) From
A Japonicus In Complex With Glucose
Length = 634
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 148 SWTWLFWPWYVAIALGVYGLYCFR---KQSLGEASIFE 182
WT PWYVA++ GV+G+ + +Q+ G AS F+
Sbjct: 204 GWTEKNAPWYVAVSGGVHGVGPAQFLYRQNGGNASEFQ 241
>pdb|3LDK|A Chain A, Crystal Structure Of A. Japonicus Cb05
pdb|3LDR|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
Japonicus In Complex With 1-Kestose
pdb|3LEM|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
Ja Complex With Nystose
pdb|3LIG|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
Ja
pdb|3LIH|A Chain A, Crystal Structure Of Fructosyltransferase (D191a) From A.
Japonicus In Complex With Raffinose
Length = 634
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 148 SWTWLFWPWYVAIALGVYGLYCFR---KQSLGEASIFE 182
WT PWYVA++ GV+G+ + +Q+ G AS F+
Sbjct: 204 GWTEKNAPWYVAVSGGVHGVGPAQFLYRQNGGNASEFQ 241
>pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains.
pdb|2J0K|B Chain B, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains
Length = 656
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 269 FEGPELHRIPGGLNNVGMWILIVLTLLMQYNSTLYLAKYSEKVV--------VPTAVVQF 320
F+ P + ++ G + +WI++ L L + S L + K+S + + TA+
Sbjct: 448 FDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYL 507
Query: 321 GPYRWVRHPIYASTMLLFVTYCIAL 345
R+V I A +L+ T C+ L
Sbjct: 508 ESKRFVHRDIAARNVLVSATDCVKL 532
>pdb|2JKK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
pdb|2JKO|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 8/85 (9%)
Query: 269 FEGPELHRIPGGLNNVGMWILIVLTLLMQYNSTLYLAKYSEKVV--------VPTAVVQF 320
F+ P + ++ G + +WI++ L L + S L + K+S + + TA+
Sbjct: 68 FDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKFSLDLASLILYAYQLSTALAYL 127
Query: 321 GPYRWVRHPIYASTMLLFVTYCIAL 345
R+V I A +L+ T C+ L
Sbjct: 128 ESKRFVHRDIAARNVLVSATDCVKL 152
>pdb|3BZ3|A Chain A, Crystal Structure Analysis Of Focal Adhesion Kinase With A
Methanesulfonamide Diaminopyrimidine Inhibitor
Length = 276
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 269 FEGPELHRIPGGLNNVGMWILIVLTLLMQYNSTLYLAKYSEKVV--------VPTAVVQF 320
F+ P + ++ G + +WI++ L L + S L + KYS + + TA+
Sbjct: 65 FDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYL 124
Query: 321 GPYRWVRHPIYASTMLLFVTYCIAL 345
R+V I A +L+ C+ L
Sbjct: 125 ESKRFVHRDIAARNVLVSSNDCVKL 149
>pdb|2JKM|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 269 FEGPELHRIPGGLNNVGMWILIVLTLLMQYNSTLYLAKYSEKVV--------VPTAVVQF 320
F+ P + ++ G + +WI++ L L + S L + KYS + + TA+
Sbjct: 68 FDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYL 127
Query: 321 GPYRWVRHPIYASTMLLFVTYCIAL 345
R+V I A +L+ C+ L
Sbjct: 128 ESKRFVHRDIAARNVLVSSNDCVKL 152
>pdb|2J0M|B Chain B, Crystal Structure A Two-Chain Complex Between The Ferm And
Kinase Domains Of Focal Adhesion Kinase.
pdb|2JKQ|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 269 FEGPELHRIPGGLNNVGMWILIVLTLLMQYNSTLYLAKYSEKVV--------VPTAVVQF 320
F+ P + ++ G + +WI++ L L + S L + KYS + + TA+
Sbjct: 68 FDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYL 127
Query: 321 GPYRWVRHPIYASTMLLFVTYCIAL 345
R+V I A +L+ C+ L
Sbjct: 128 ESKRFVHRDIAARNVLVSSNDCVKL 152
>pdb|2ETM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain
Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative
pdb|2ETM|B Chain B, Crystal Structure Of Focal Adhesion Kinase Domain
Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative
pdb|2IJM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain With 2
Molecules In The Asymmetric Unit Complexed With Adp And
Atp
pdb|2IJM|B Chain B, Crystal Structure Of Focal Adhesion Kinase Domain With 2
Molecules In The Asymmetric Unit Complexed With Adp And
Atp
Length = 281
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 269 FEGPELHRIPGGLNNVGMWILIVLTLLMQYNSTLYLAKYSEKVV--------VPTAVVQF 320
F+ P + ++ G + +WI++ L L + S L + KYS + + TA+
Sbjct: 70 FDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYL 129
Query: 321 GPYRWVRHPIYASTMLLFVTYCIAL 345
R+V I A +L+ C+ L
Sbjct: 130 ESKRFVHRDIAARNVLVSSNDCVKL 154
>pdb|3PXK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Pyrrolo[2,3- D]thiazole
pdb|3PXK|B Chain B, Focal Adhesion Kinase Catalytic Domain In Complex With
Pyrrolo[2,3- D]thiazole
Length = 282
Score = 28.9 bits (63), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 269 FEGPELHRIPGGLNNVGMWILIVLTLLMQYNSTLYLAKYSEKVV--------VPTAVVQF 320
F+ P + ++ G + +WI++ L L + S L + KYS + + TA+
Sbjct: 71 FDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYL 130
Query: 321 GPYRWVRHPIYASTMLLFVTYCIAL 345
R+V I A +L+ C+ L
Sbjct: 131 ESKRFVHRDIAARNVLVSSNDCVKL 155
>pdb|1MP8|A Chain A, Crystal Structure Of Focal Adhesion Kinase (Fak)
pdb|4I4F|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With An Allosteric Binding Pyrazolobenzothiazine
Compound
Length = 281
Score = 28.9 bits (63), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 269 FEGPELHRIPGGLNNVGMWILIVLTLLMQYNSTLYLAKYSEKVV--------VPTAVVQF 320
F+ P + ++ G + +WI++ L L + S L + KYS + + TA+
Sbjct: 73 FDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYL 132
Query: 321 GPYRWVRHPIYASTMLLFVTYCIAL 345
R+V I A +L+ C+ L
Sbjct: 133 ESKRFVHRDIAARNVLVSSNDCVKL 157
>pdb|4EBW|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With Novel Allosteric Inhibitor
pdb|4EBV|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With Novel Allosteric Inhibitor
Length = 304
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 8/85 (9%)
Query: 269 FEGPELHRIPGGLNNVGMWILIVLTLLMQYNSTLYLAKYSEKVV--------VPTAVVQF 320
F+ P + ++ G + +WI++ L L + S L + KYS + + TA+
Sbjct: 96 FDHPHIVKLIGVITENPVWIIMELCTLGELRSFLQVRKYSLDLASLILYAYQLSTALAYL 155
Query: 321 GPYRWVRHPIYASTMLLFVTYCIAL 345
R+V I A +L+ C+ L
Sbjct: 156 ESKRFVHRDIAARNVLVSSNDCVKL 180
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.140 0.458
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,901,483
Number of Sequences: 62578
Number of extensions: 404879
Number of successful extensions: 707
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 706
Number of HSP's gapped (non-prelim): 14
length of query: 397
length of database: 14,973,337
effective HSP length: 101
effective length of query: 296
effective length of database: 8,652,959
effective search space: 2561275864
effective search space used: 2561275864
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)