Query 041336
Match_columns 397
No_of_seqs 311 out of 1383
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 06:05:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041336.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041336hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2628 Farnesyl cysteine-carb 99.9 1.2E-24 2.7E-29 201.6 15.2 197 139-397 5-201 (201)
2 COG2020 STE14 Putative protein 99.9 1.1E-23 2.5E-28 193.7 17.8 116 280-396 67-185 (187)
3 PF04191 PEMT: Phospholipid me 99.8 1.7E-19 3.8E-24 148.9 10.8 96 286-381 6-106 (106)
4 PF01222 ERG4_ERG24: Ergostero 99.6 1.7E-15 3.7E-20 155.9 12.3 84 313-397 347-432 (432)
5 PF04140 ICMT: Isoprenylcystei 99.6 2.7E-15 5.8E-20 125.0 11.0 86 289-375 4-94 (94)
6 COG3752 Steroid 5-alpha reduct 99.6 3.5E-14 7.6E-19 136.8 17.1 107 287-396 154-266 (272)
7 PF06966 DUF1295: Protein of u 99.6 5.2E-14 1.1E-18 133.9 17.0 107 281-388 119-235 (235)
8 KOG1435 Sterol reductase/lamin 99.5 4.9E-14 1.1E-18 143.8 8.0 84 313-397 343-428 (428)
9 COG1755 Uncharacterized protei 99.2 3.6E-10 7.8E-15 103.4 13.0 99 279-377 67-169 (172)
10 KOG4650 Predicted steroid redu 98.9 3.7E-09 8E-14 102.6 10.1 108 286-396 180-296 (311)
11 PLN02392 probable steroid redu 98.8 2.8E-07 6.1E-12 90.1 18.5 107 285-397 154-260 (260)
12 PF07298 NnrU: NnrU protein; 98.3 3.6E-06 7.7E-11 78.8 10.0 68 322-394 96-163 (191)
13 PF02544 Steroid_dh: 3-oxo-5-a 98.2 9.1E-06 2E-10 72.8 10.2 103 289-397 48-150 (150)
14 KOG1638 Steroid reductase [Lip 97.6 0.0039 8.5E-08 60.9 16.7 173 205-397 79-257 (257)
15 PLN02560 enoyl-CoA reductase 97.4 0.00051 1.1E-08 68.8 8.8 105 288-395 199-306 (308)
16 PLN03164 3-oxo-5-alpha-steroid 97.3 0.0015 3.2E-08 66.1 10.1 105 288-397 216-323 (323)
17 COG4094 Predicted membrane pro 95.9 0.012 2.5E-07 56.3 5.1 78 315-395 96-173 (219)
18 KOG4142 Phospholipid methyltra 93.8 0.45 9.7E-06 44.7 9.2 72 303-377 125-196 (208)
19 PLN02797 phosphatidyl-N-dimeth 91.8 0.36 7.9E-06 44.6 5.6 59 287-348 70-135 (164)
20 KOG1640 Predicted steroid redu 90.9 1.4 3.1E-05 44.5 9.2 78 314-397 227-304 (304)
21 KOG1639 Steroid reductase requ 76.9 3.4 7.3E-05 41.3 4.3 73 318-396 224-297 (297)
22 PF12576 DUF3754: Protein of u 69.0 13 0.00029 33.3 6.0 78 86-172 29-112 (141)
23 PF13260 DUF4051: Protein of u 36.0 47 0.001 25.6 3.1 22 152-173 3-24 (54)
24 KOG2302 T-type voltage-gated C 31.9 2.6E+02 0.0057 33.7 9.4 49 284-332 1260-1317(1956)
25 PF11084 DUF2621: Protein of u 30.5 67 0.0015 29.4 3.8 29 146-174 5-33 (141)
26 PHA01929 putative scaffolding 29.3 46 0.00099 33.7 2.8 24 366-389 153-176 (306)
27 COG2814 AraJ Arabinose efflux 29.0 7.1E+02 0.015 26.3 11.7 85 139-232 97-189 (394)
28 PF12270 Cyt_c_ox_IV: Cytochro 28.8 4.6E+02 0.0099 24.0 11.8 24 174-197 1-24 (137)
29 PF14147 Spore_YhaL: Sporulati 24.9 3.1E+02 0.0068 21.3 6.0 19 359-377 15-33 (52)
30 PRK07419 1,4-dihydroxy-2-napht 21.1 8.6E+02 0.019 24.5 15.6 23 318-342 135-157 (304)
31 TIGR02908 CoxD_Bacillus cytoch 20.1 73 0.0016 28.2 2.0 40 165-205 70-109 (110)
No 1
>KOG2628 consensus Farnesyl cysteine-carboxyl methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.2e-24 Score=201.59 Aligned_cols=197 Identities=28% Similarity=0.431 Sum_probs=144.8
Q ss_pred echhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhhccchhHHHHHHHHHHHHHHHHHHhcCccccCCcchhhHHHHHHHH
Q 041336 139 LNPFFWMYFSWTWLFWPWYVAIALGVYGLYCFRKQSLGEASIFEQLAIVTSLFTWLTLVPPAVFNGYLEGWPFVFFFVYH 218 (397)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~i~~~~~~~lll~~pAGtl~y~~aW~yl~~~~~~ 218 (397)
++|+.||||||.++||+|+-+.-. +++++..+..+.+++=-++.-.||.+.+.+-++
T Consensus 5 ~~~~~~~~f~~~~lfls~Fh~se~-----------------------~~ta~~~~~tls~~sfll~~~~~y~la~~~s~l 61 (201)
T KOG2628|consen 5 FSPTEWMSFSWYFLFLSLFHISEY-----------------------LVTALHNPSTLSLDSFLLNHSKGYWLAFLLSWL 61 (201)
T ss_pred eCcchHHHHHHHHHHHHHHHHHHH-----------------------HHHhhcCccccchHHHHHhcchhHHHHHHHHHH
Confidence 899999999999999999976654 566667777777777778888898888877666
Q ss_pred HHHhhhhhhhhhhccccccccCCCCCCCCCCchHHHHHHHHHHHHHHHHhhhcccccccCcchhhHHHHHHHHHHHHHHH
Q 041336 219 YFFFFNVSVRKRLYGDYYAREHDPRWDINTPTWCRILFTIGVMAGHWLVAFEGPELHRIPGGLNNVGMWILIVLTLLMQY 298 (397)
Q Consensus 219 ~~~~~~~~l~~r~~g~~~~r~hD~~~~~~~~~wdkvLl~~ai~lg~~l~a~~~p~l~~l~~~ws~lg~~lLIlaGlll~~ 298 (397)
.++..+ . ++|+++.+...|.+. +++++....++..-..+++. +|..+.
T Consensus 62 ef~~e~---------~-----~fP~lk~~~~l~~~~----------------~~gl~~~~~Ge~~r~~amit-ag~~f~- 109 (201)
T KOG2628|consen 62 EFLLEI---------L-----LFPSLKQNSWLWSRI----------------GLGLLMLILGEALRKIAMIT-AGTSFT- 109 (201)
T ss_pred HHHHHH---------H-----hCcchheeeeeeeec----------------cCceeeeehHHHHHHHHHHH-HHHHHH-
Confidence 663332 1 456654444555322 12232222233322222222 222111
Q ss_pred HHHHHhhhccccccCCCeeeeccccccccChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhh
Q 041336 299 NSTLYLAKYSEKVVVPTAVVQFGPYRWVRHPIYASTMLLFVTYCIALRAPLSLLFLVAVCLVYYEQKAKLEEALMVETFG 378 (397)
Q Consensus 299 ~~~l~l~r~~~~v~~~~~LVTtGpYr~VRHPmYlG~iLl~lG~aL~lgS~~aLll~~v~~~i~~~~rI~~EEr~L~~~FG 378 (397)
.+.+. +.+++++||++|||+|+|||.|.|.+++.+|.++++.++.+++..+.++.-++..||+.||+.|.+-||
T Consensus 110 ---H~va~---~k~~~h~lv~~GvY~y~RHPsY~g~flw~~gtq~~L~npis~v~f~~V~w~ff~~Ri~~EE~~Li~fFg 183 (201)
T KOG2628|consen 110 ---HYVAT---KKVSDHKLVTSGVYAYVRHPSYVGFFLWAAGTQTMLCNPISLVAFLLVVWRFFADRIKEEEKYLISFFG 183 (201)
T ss_pred ---HHHhh---ccccCceeEeccchhheeCchHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhh
Confidence 11111 335689999999999999999999999999999999999999887777788889999999999999999
Q ss_pred HHHHHHHHhcCCCceeccC
Q 041336 379 ERYLEYASKVRHKFIPFVY 397 (397)
Q Consensus 379 eeY~eY~krVpyRLIP~Iw 397 (397)
++|.||++||+ .-||++.
T Consensus 184 ~~Y~eY~kkV~-sGiPfi~ 201 (201)
T KOG2628|consen 184 SSYVEYAKKVP-SGIPFIK 201 (201)
T ss_pred HHHHHHHHhCC-cCCCCCC
Confidence 99999999999 5699873
No 2
>COG2020 STE14 Putative protein-S-isoprenylcysteine methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=1.1e-23 Score=193.71 Aligned_cols=116 Identities=26% Similarity=0.380 Sum_probs=97.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHhhhccc---cccCCCeeeeccccccccChHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 041336 280 GLNNVGMWILIVLTLLMQYNSTLYLAKYSE---KVVVPTAVVQFGPYRWVRHPIYASTMLLFVTYCIALRAPLSLLFLVA 356 (397)
Q Consensus 280 ~ws~lg~~lLIlaGlll~~~~~l~l~r~~~---~v~~~~~LVTtGpYr~VRHPmYlG~iLl~lG~aL~lgS~~aLll~~v 356 (397)
.|....+.++..+|..+..++....++... +.++++++||+|||+++|||+|+|.+++.+|.++.++|+++++...+
T Consensus 67 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LVttG~Y~~VRHP~Y~~~~l~~~g~~~~~~~~~~l~~~~~ 146 (187)
T COG2020 67 SWIVGLGLLLVGLGLALRLWAMRTLGRSWTVSVKARKGHELVTTGPYSIVRHPIYLGLLLFALGTGLLLGSLWALLIFVV 146 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccCCCCCCeeEecCCcceecCcHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344455566677788888887776666532 23468999999999999999999999999999999999999988777
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCCceecc
Q 041336 357 VCLVYYEQKAKLEEALMVETFGERYLEYASKVRHKFIPFV 396 (397)
Q Consensus 357 ~~~i~~~~rI~~EEr~L~~~FGeeY~eY~krVpyRLIP~I 396 (397)
+...++..++..|||.|+++||++|+|||+||| |++|.+
T Consensus 147 ~~~~~~~~~i~~EEr~L~~~fg~~Y~~Y~~rV~-r~iP~~ 185 (187)
T COG2020 147 LVALLFLFRIREEERYLRAEFGDEYREYRKRVP-RLIPPL 185 (187)
T ss_pred HHHHHHHHHhhHHHHHHHHHhhHHHHHHHHhCC-ccCCCC
Confidence 666666789999999999999999999999999 788875
No 3
>PF04191 PEMT: Phospholipid methyltransferase ; InterPro: IPR007318 The Saccharomyces cerevisiae (Baker's yeast) phospholipid methyltransferase (2.1.1.16 from EC) has a broad substrate specificity of unsaturated phospholipids [].; GO: 0008170 N-methyltransferase activity, 0006644 phospholipid metabolic process
Probab=99.81 E-value=1.7e-19 Score=148.93 Aligned_cols=96 Identities=30% Similarity=0.556 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc---ccc--cCCCeeeeccccccccChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 041336 286 MWILIVLTLLMQYNSTLYLAKYS---EKV--VVPTAVVQFGPYRWVRHPIYASTMLLFVTYCIALRAPLSLLFLVAVCLV 360 (397)
Q Consensus 286 ~~lLIlaGlll~~~~~l~l~r~~---~~v--~~~~~LVTtGpYr~VRHPmYlG~iLl~lG~aL~lgS~~aLll~~v~~~i 360 (397)
+.+++++|+.+..++...+++.. .+. ++++++||+||||++|||||+|.++.++|.++..++++.++..++....
T Consensus 6 G~~l~~~g~~l~~~~~~~l~~~~~~~~~~~~~~~~~Lvt~G~Y~~vRhPmY~g~~l~~~G~~l~~~s~~~l~~~~~~~~~ 85 (106)
T PF04191_consen 6 GLLLILAGIALAIWAFKALGRFGTYYGDFFGREPQRLVTTGPYRYVRHPMYLGFLLILLGIALMLGSWLGLLLAVLAFLL 85 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCeecCCcccccCCcccccCCccCcCChHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 44566778888887766555432 222 4577899999999999999999999999999999999987766555555
Q ss_pred HHHHhHHHHHHHHHHHhhHHH
Q 041336 361 YYEQKAKLEEALMVETFGERY 381 (397)
Q Consensus 361 ~~~~rI~~EEr~L~~~FGeeY 381 (397)
++...+..||+.|+++|||+|
T Consensus 86 ~~~~~~~~EE~~L~~~fG~~Y 106 (106)
T PF04191_consen 86 YYIFIIRFEERFLERRFGEEY 106 (106)
T ss_pred HHHHHHHhHHHHHHHHhCcCC
Confidence 566667799999999999998
No 4
>PF01222 ERG4_ERG24: Ergosterol biosynthesis ERG4/ERG24 family; InterPro: IPR001171 The two fungal enzymes, C-14 sterol reductase (gene ERG24 in budding yeast and erg3 in Neurospora crassa) and C-24(28) sterol reductase (gene ERG4 in budding yeast and sts1 in fission yeast), are involved in ergosterol biosynthesis. They act by reducing double bonds in precursors of ergosterol []. These proteins are highly hydrophobic and seem to contain seven or eight transmembrane regions. Chicken lamin B receptor that is thought to anchor the lamina to the inner nuclear membrane belongs to this family.; GO: 0016020 membrane
Probab=99.63 E-value=1.7e-15 Score=155.92 Aligned_cols=84 Identities=20% Similarity=0.442 Sum_probs=72.9
Q ss_pred CCCeeeeccccccccChHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCC
Q 041336 313 VPTAVVQFGPYRWVRHPIYASTMLLFVTYCIALR--APLSLLFLVAVCLVYYEQKAKLEEALMVETFGERYLEYASKVRH 390 (397)
Q Consensus 313 ~~~~LVTtGpYr~VRHPmYlG~iLl~lG~aL~lg--S~~aLll~~v~~~i~~~~rI~~EEr~L~~~FGeeY~eY~krVpy 390 (397)
++++|.++|.|+++|||+|+|++++.+++++..| +.+..... +++++++.+|..++|+++++|||++|+|||++|||
T Consensus 347 ~G~~LL~SGwWg~~Rh~NY~gdil~a~aw~l~~gf~~~~pyfy~-~~~~~lL~hR~~RD~~rC~~KYG~~W~~Yc~~Vpy 425 (432)
T PF01222_consen 347 RGSKLLVSGWWGIARHPNYLGDILMALAWCLPCGFSSILPYFYP-IFFTILLIHRARRDEERCRKKYGKDWDEYCKRVPY 425 (432)
T ss_pred CCCeEEEcChhHhhcccchHHHHHHHHHHHHHHhcCccHHHHHH-HHHHHHHhhhHHHHHHHHHHhhCHHHHHHHHhCCE
Confidence 4678999999999999999999999999998765 44444433 34456788999999999999999999999999999
Q ss_pred CceeccC
Q 041336 391 KFIPFVY 397 (397)
Q Consensus 391 RLIP~Iw 397 (397)
|+||+||
T Consensus 426 ~~iP~iy 432 (432)
T PF01222_consen 426 RIIPGIY 432 (432)
T ss_pred EEeCCcC
Confidence 9999997
No 5
>PF04140 ICMT: Isoprenylcysteine carboxyl methyltransferase (ICMT) family ; InterPro: IPR007269 The isoprenylcysteine o-methyltransferase (2.1.1.100 from EC) carries out carboyxl methylation of cleaved eukaryotic proteins that terminate in a CaaX motif. In Saccharomyces cerevisiae (Baker's yeast) this methylation is carried out by Ste14p, an integral endoplasmic reticulum membrane protein. Ste14p is the founding member of the isoprenylcysteine carboxyl methyltransferase (ICMT) family, whose members share significant sequence homology [].; GO: 0004671 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity, 0006481 C-terminal protein methylation, 0016021 integral to membrane; PDB: 4A2N_B.
Probab=99.63 E-value=2.7e-15 Score=124.98 Aligned_cols=86 Identities=26% Similarity=0.416 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHHhhhcccc---ccCCCeeeeccccccccChHHHHHHHHHHHHHHHhhhH-H-HHHHHHHHHHHHHH
Q 041336 289 LIVLTLLMQYNSTLYLAKYSEK---VVVPTAVVQFGPYRWVRHPIYASTMLLFVTYCIALRAP-L-SLLFLVAVCLVYYE 363 (397)
Q Consensus 289 LIlaGlll~~~~~l~l~r~~~~---v~~~~~LVTtGpYr~VRHPmYlG~iLl~lG~aL~lgS~-~-aLll~~v~~~i~~~ 363 (397)
+.++|..++.++...+|++++. ..+++++||+||||++|||+|+|.++..+|....+.+. . +++..++. ...+.
T Consensus 4 ~~i~g~~lr~~a~~~LG~~ft~~v~~~~~h~lVt~GpY~~vRHP~Y~g~~~~~~~~~~ll~~~~~~~~~~~~~~-~~~l~ 82 (94)
T PF04140_consen 4 LFIAGQLLRYWAIRTLGRYFTHRVIIQPGHKLVTSGPYRYVRHPSYLGNIIWELGGQLLLFNAWLTALILFALV-AWLLF 82 (94)
T ss_dssp -HHHHHHHHHHHHHHHGGG--SS--EETT-----SSTTTTBSSHHHHH-HHHHHHHHHHHHT-HHHHHHHHHHH-HHHHH
T ss_pred hHHHHHHHHHHHHHHccccCcEEEEecCCCEEecccccccccCchHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHH
Confidence 4577899999999999998753 35789999999999999999999877777665555554 3 33333332 33345
Q ss_pred HhHHHHHHHHHH
Q 041336 364 QKAKLEEALMVE 375 (397)
Q Consensus 364 ~rI~~EEr~L~~ 375 (397)
.|++.||+.|.+
T Consensus 83 ~RI~~EE~~L~~ 94 (94)
T PF04140_consen 83 VRIREEERALIE 94 (94)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 899999999975
No 6
>COG3752 Steroid 5-alpha reductase family enzyme [General function prediction only]
Probab=99.60 E-value=3.5e-14 Score=136.84 Aligned_cols=107 Identities=18% Similarity=0.327 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccCCCeeeeccccccccChHHHHHHHHHHHHHHHhhhHHHHHH---HHHHH--HHH
Q 041336 287 WILIVLTLLMQYNSTLYLAKYSEKVVVPTAVVQFGPYRWVRHPIYASTMLLFVTYCIALRAPLSLLF---LVAVC--LVY 361 (397)
Q Consensus 287 ~lLIlaGlll~~~~~l~l~r~~~~v~~~~~LVTtGpYr~VRHPmYlG~iLl~lG~aL~lgS~~aLll---~~v~~--~i~ 361 (397)
..+.+.|+.+..-+..++..+..+|++..+++++|.+|++|||+|+|+.+.++|+.+..-+.+...- .++.+ ++.
T Consensus 154 ~~iwivg~~fE~lgD~QL~~Fk~~P~nkgkll~~GLWr~tRHPNYFgE~l~Wwg~~Lia~~~~~~~W~~~sPllmt~LL~ 233 (272)
T COG3752 154 LAIWIVGIVFEALGDAQLWVFKKDPRNKGKLLDTGLWRWTRHPNYFGEALVWWGFYLIAISEWLLLWAVASPLLMTWLLV 233 (272)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhChhhccccccccceecccCcchHHHHHHHHHHHHHHHhhhhHhhhcccHHHHHHHHH
Confidence 3445557777766777888888888899999999999999999999999999999887655433321 22221 122
Q ss_pred HHHhHH-HHHHHHHHHhhHHHHHHHHhcCCCceecc
Q 041336 362 YEQKAK-LEEALMVETFGERYLEYASKVRHKFIPFV 396 (397)
Q Consensus 362 ~~~rI~-~EEr~L~~~FGeeY~eY~krVpyRLIP~I 396 (397)
....+. .||+++++| ++|+||++||+ +|+|++
T Consensus 234 ~vSGvp~l~ekm~k~r--~~fr~Yq~rt~-~F~P~~ 266 (272)
T COG3752 234 HVSGVPPLEEKMLKSR--PGFREYQRRTN-AFFPRP 266 (272)
T ss_pred HhcCCChHHHHHhccc--HhHHHHHHHhc-ccCCCC
Confidence 344555 999999999 89999999999 899985
No 7
>PF06966 DUF1295: Protein of unknown function (DUF1295); InterPro: IPR010721 This family contains a number of bacterial and eukaryotic proteins of unknown function that are approximately 300 residues long.
Probab=99.59 E-value=5.2e-14 Score=133.86 Aligned_cols=107 Identities=16% Similarity=0.271 Sum_probs=81.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhccccccCCCeeeeccccccccChHHHHHHHHHHHHHHHhhhH------HHHHHH
Q 041336 281 LNNVGMWILIVLTLLMQYNSTLYLAKYSEKVVVPTAVVQFGPYRWVRHPIYASTMLLFVTYCIALRAP------LSLLFL 354 (397)
Q Consensus 281 ws~lg~~lLIlaGlll~~~~~l~l~r~~~~v~~~~~LVTtGpYr~VRHPmYlG~iLl~lG~aL~lgS~------~aLll~ 354 (397)
+....+..+.+.|+.+...+..++.++..++.++++++++|.|+++|||||+|++++++|+.++..+. ++++ .
T Consensus 119 ~~~~~g~~l~~~g~~~E~~AD~Q~~~fk~~~~n~g~~~~~GLw~~sRHPNYfGE~l~W~g~~~~a~~~~~~~~~~~~~-~ 197 (235)
T PF06966_consen 119 WLDILGIALFLIGFLLETVADQQKYRFKKDPANKGKFCTTGLWRYSRHPNYFGEILFWWGIYLAAISSGSGWLWWAII-G 197 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCccccCCeeeeeeCchHHHHHHHHHHHHHHHHhhhhhHHHHHHH-H
Confidence 33334456667788888888888887776677778899999999999999999999999999986543 2222 2
Q ss_pred HHHHH--HHHHHhHHHHHHHHHHHhh--HHHHHHHHhc
Q 041336 355 VAVCL--VYYEQKAKLEEALMVETFG--ERYLEYASKV 388 (397)
Q Consensus 355 ~v~~~--i~~~~rI~~EEr~L~~~FG--eeY~eY~krV 388 (397)
+++.. ..+...+...|+.+.++|| ++|+||+++|
T Consensus 198 pl~~~~~l~~~sgip~~E~~~~~kyg~~~~Y~~Y~~~t 235 (235)
T PF06966_consen 198 PLFMTLLLLFVSGIPLLEKRMAKKYGDRPAYQEYQRRT 235 (235)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHhcCCCHhHHHHHhcC
Confidence 22222 2223347889999999999 9999999987
No 8
>KOG1435 consensus Sterol reductase/lamin B receptor [Lipid transport and metabolism; Signal transduction mechanisms]
Probab=99.49 E-value=4.9e-14 Score=143.84 Aligned_cols=84 Identities=21% Similarity=0.467 Sum_probs=73.8
Q ss_pred CCCeeeeccccccccChHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCC
Q 041336 313 VPTAVVQFGPYRWVRHPIYASTMLLFVTYCIALR--APLSLLFLVAVCLVYYEQKAKLEEALMVETFGERYLEYASKVRH 390 (397)
Q Consensus 313 ~~~~LVTtGpYr~VRHPmYlG~iLl~lG~aL~lg--S~~aLll~~v~~~i~~~~rI~~EEr~L~~~FGeeY~eY~krVpy 390 (397)
++++|.++|.|+++|||+|+|++++.+++++..| ++++-.. ++++++.+.+|..++|.++++|||++|+|||++|||
T Consensus 343 ~Gs~LL~SGwWG~aRh~nY~gD~i~alawslp~gf~s~lpyfy-~iyf~~LLvhR~~RDe~rC~~KYG~~W~~Yc~~Vpy 421 (428)
T KOG1435|consen 343 TGSKLLVSGWWGVARHPNYLGDLIMALAWSLPCGFNSPLPYFY-PIYFTLLLVHRAARDEHRCRSKYGEDWEEYCRKVPY 421 (428)
T ss_pred cCCeEEeechhhhhcCcCcHHHHHHHHHHHHhccCCCCcchHH-HHHHHHHHHHHHhhhHHHHHHHHhhhHHHHHhhCCc
Confidence 4789999999999999999999999999998764 6666555 334456678999999999999999999999999999
Q ss_pred CceeccC
Q 041336 391 KFIPFVY 397 (397)
Q Consensus 391 RLIP~Iw 397 (397)
|++|+||
T Consensus 422 riiP~Vy 428 (428)
T KOG1435|consen 422 RILPYVY 428 (428)
T ss_pred ccCCCCC
Confidence 9999987
No 9
>COG1755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.18 E-value=3.6e-10 Score=103.45 Aligned_cols=99 Identities=14% Similarity=0.200 Sum_probs=81.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhhcccc---ccCCCeeeeccccccccChHHHH-HHHHHHHHHHHhhhHHHHHHH
Q 041336 279 GGLNNVGMWILIVLTLLMQYNSTLYLAKYSEK---VVVPTAVVQFGPYRWVRHPIYAS-TMLLFVTYCIALRAPLSLLFL 354 (397)
Q Consensus 279 ~~ws~lg~~lLIlaGlll~~~~~l~l~r~~~~---v~~~~~LVTtGpYr~VRHPmYlG-~iLl~lG~aL~lgS~~aLll~ 354 (397)
+.|.+..+.+++++...+++|+...+|+.... ..++++++++||||++|||+|+- .+.-.+|.++..+.+.+.+..
T Consensus 67 f~~~~~~gl~~~l~s~~ll~~vi~~LG~iWttki~ilP~h~~v~sglfk~~kHPNYflnIipEligl~Ll~~A~~Ta~l~ 146 (172)
T COG1755 67 FNWLSIIGLALLLFSQILLYWVIKSLGEIWTTKIMILPNHQIVRSGLFKTMKHPNYFLNIIPELIGLPLLCQAWYTALLF 146 (172)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHhhhheeeEEEeCCceeeccccchhccCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666677788999999999999998642 24789999999999999999999 778899999999998877665
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHh
Q 041336 355 VAVCLVYYEQKAKLEEALMVETF 377 (397)
Q Consensus 355 ~v~~~i~~~~rI~~EEr~L~~~F 377 (397)
.++....+..|++.||+.|.+-+
T Consensus 147 ~p~ya~~L~vRIr~EekaL~~~~ 169 (172)
T COG1755 147 SPIYALLLYVRIRQEEKALAELF 169 (172)
T ss_pred HHHHHHHHhhhhhHHHHHHHHhc
Confidence 55556667889999999998754
No 10
>KOG4650 consensus Predicted steroid reductase [General function prediction only]
Probab=98.95 E-value=3.7e-09 Score=102.61 Aligned_cols=108 Identities=19% Similarity=0.301 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcc---ccccC-CCeeeeccccccccChHHHHHHHHHHHHHHHhhh-----HHHHHHHHH
Q 041336 286 MWILIVLTLLMQYNSTLYLAKYS---EKVVV-PTAVVQFGPYRWVRHPIYASTMLLFVTYCIALRA-----PLSLLFLVA 356 (397)
Q Consensus 286 ~~lLIlaGlll~~~~~l~l~r~~---~~v~~-~~~LVTtGpYr~VRHPmYlG~iLl~lG~aL~lgS-----~~aLll~~v 356 (397)
++.+.+.|.++...+..+.-.+. ..+.+ +..-+++|.+||+|||+|+|+.++++|+-++... .|.++..++
T Consensus 180 ~~~m~~~gfvie~~ADqQ~~~f~~~~~~l~~~Gk~~~d~GlwrySRHPNylgEqL~Wwglyvfa~~~~egl~wtvi~~lv 259 (311)
T KOG4650|consen 180 GWTMWVFGFVIEALADQQKLSFKEARYDLENLGKGWCDVGLWRYSRHPNYLGEQLLWWGLYVFAAPVLEGLEWTVIAGLV 259 (311)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHhhhcCHHHcCCccccccceeeccCccHHHHHHHHHHHHHHHhhhhccchHHHHHHHH
Confidence 34555667777766543332222 12223 3338999999999999999999999998886432 356665555
Q ss_pred HHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCCceecc
Q 041336 357 VCLVYYEQKAKLEEALMVETFGERYLEYASKVRHKFIPFV 396 (397)
Q Consensus 357 ~~~i~~~~rI~~EEr~L~~~FGeeY~eY~krVpyRLIP~I 396 (397)
+...... ....-|+...+++ +.|+.|+++|. |+||+.
T Consensus 260 ~~~~l~~-~t~lie~~~v~~~-~aYR~Yqktts-~~ip~~ 296 (311)
T KOG4650|consen 260 FLTLLLL-FTSLIELLEVEKY-PAYRVYQKTTS-RFIPRL 296 (311)
T ss_pred HHHHHHH-HHhhhhhhhhhhh-HHHHHHHhccc-cccccc
Confidence 5444333 3444555555666 69999999999 899964
No 11
>PLN02392 probable steroid reductase DET2
Probab=98.83 E-value=2.8e-07 Score=90.14 Aligned_cols=107 Identities=19% Similarity=0.252 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccCCCeeeeccccccccChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 041336 285 GMWILIVLTLLMQYNSTLYLAKYSEKVVVPTAVVQFGPYRWVRHPIYASTMLLFVTYCIALRAPLSLLFLVAVCLVYYEQ 364 (397)
Q Consensus 285 g~~lLIlaGlll~~~~~l~l~r~~~~v~~~~~LVTtGpYr~VRHPmYlG~iLl~lG~aL~lgS~~aLll~~v~~~i~~~~ 364 (397)
.+.++.+.|......+...+.+-.. ..++.++=+.|.|++|.+|+|+|+++.++|++++..++.++++++ ........
T Consensus 154 iG~~lF~~g~~~N~~sh~~L~~LRk-~g~~Y~iP~GGlF~~VscPnYf~EileW~gfal~t~s~~~~~F~~-~~~~nl~~ 231 (260)
T PLN02392 154 GGLVVFLWGMRINVWSDRVLVGLKR-EGGGYKVPRGGWFELVSCPNYFGEIVEWLGWAVMTWSWAGFGFFL-YTCSNLVP 231 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-CCCeeECCCCCCcCeEcCCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 3445566677777776655544321 123457778899999999999999999999999988766655433 33444566
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHhcCCCceeccC
Q 041336 365 KAKLEEALMVETFGERYLEYASKVRHKFIPFVY 397 (397)
Q Consensus 365 rI~~EEr~L~~~FGeeY~eY~krVpyRLIP~Iw 397 (397)
|+..-.|..+++|||+|.+ -|+++||+||
T Consensus 232 rA~~~hkwY~~kFg~~ypk----~RkaiIPfi~ 260 (260)
T PLN02392 232 RACANHKWYLEKFGEDYPK----GRKAVIPFLY 260 (260)
T ss_pred HHHHHHHHHHHHccccccC----CCeEecCccC
Confidence 7777788899999977653 3458999986
No 12
>PF07298 NnrU: NnrU protein; InterPro: IPR009915 This family consists of several plant and bacterial NnrU proteins. NnrU is thought to be involved in the reduction of nitric oxide. The exact function of NnrU is unclear. It is thought however that NnrU and perhaps NnrT are required for expression of both nirK and nor [].
Probab=98.31 E-value=3.6e-06 Score=78.85 Aligned_cols=68 Identities=24% Similarity=0.350 Sum_probs=55.0
Q ss_pred ccccccChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCCcee
Q 041336 322 PYRWVRHPIYASTMLLFVTYCIALRAPLSLLFLVAVCLVYYEQKAKLEEALMVETFGERYLEYASKVRHKFIP 394 (397)
Q Consensus 322 pYr~VRHPmYlG~iLl~lG~aL~lgS~~aLll~~v~~~i~~~~rI~~EEr~L~~~FGeeY~eY~krVpyRLIP 394 (397)
+||++||||+.|..++..+-.+..|+.-++++...+ ..+-...+..|||+ ++ +|++|++|+++|+ ..|
T Consensus 96 i~r~~RHP~l~g~~lWA~aHLl~nGd~~~~lLFg~~-~~~al~~~~~~~rr-~~-~g~~~~~~~~~~s--~~~ 163 (191)
T PF07298_consen 96 IYRITRHPMLLGVLLWALAHLLANGDLASLLLFGGF-LAWALIGIILIDRR-RR-FGDAWRAYPRRTS--IWP 163 (191)
T ss_pred HHHHhcCchHHHHHHHHHHHhhhcCcHHHHHHHHHH-HHHHHHHHHHHHHh-hc-cccccccccCCCC--CCC
Confidence 999999999999999888888887777666655444 34455667889998 77 9999999999997 455
No 13
>PF02544 Steroid_dh: 3-oxo-5-alpha-steroid 4-dehydrogenase ; InterPro: IPR001104 Synonym(s): Steroid 5-alpha-reductase 3-oxo-5-alpha-steroid 4-dehydrogenases, 1.3.99.5 from EC catalyse the conversion of 3-oxo-5-alpha-steroid + acceptor to 3-oxo-delta(4)-steroid + reduced acceptor. The steroid 5-alpha-reductase enzyme is responsible for the formation of dihydrotestosterone, this hormone promotes the differentiation of male external genitalia and the prostate during foetal development []. In humans mutations in this enzyme can cause a form of male pseudohermaphorditism in which the external genitalia and prostate fail to develop normally. A related steroid reductase enzyme, DET2, is found in plants such as Arabidopsis. Mutations in this enzyme cause defects in light-regulated development []. This domain is present in both type 1 and type 2 forms.; GO: 0016627 oxidoreductase activity, acting on the CH-CH group of donors, 0006629 lipid metabolic process, 0005737 cytoplasm, 0016021 integral to membrane
Probab=98.23 E-value=9.1e-06 Score=72.76 Aligned_cols=103 Identities=20% Similarity=0.368 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHhhhccccccCCCeeeeccccccccChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHHH
Q 041336 289 LIVLTLLMQYNSTLYLAKYSEKVVVPTAVVQFGPYRWVRHPIYASTMLLFVTYCIALRAPLSLLFLVAVCLVYYEQKAKL 368 (397)
Q Consensus 289 LIlaGlll~~~~~l~l~r~~~~v~~~~~LVTtGpYr~VRHPmYlG~iLl~lG~aL~lgS~~aLll~~v~~~i~~~~rI~~ 368 (397)
+.+.|......+...+.+...+..++.++-+.|.|+++..|+|+++++.++|++++.+++.+...+. +.......++..
T Consensus 48 lf~~g~~~n~~~h~~L~~lr~~~~~~y~iP~gg~F~~vscP~Y~~Eil~w~~f~l~~~~~~~~~f~~-~~~~~l~~~A~~ 126 (150)
T PF02544_consen 48 LFLIGSIGNFYSHLILANLRKPGSKKYKIPKGGLFEYVSCPHYFFEILIWIGFALLTGSWPSYAFAL-FVVVNLSPRAVQ 126 (150)
T ss_pred HHHHHHHHHHHHHHHHHhcccccCCceeCCCCCCcceeeehhhHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHHHHHH
Confidence 3344555555554455433222234567888999999999999999999999999988765554433 233444556666
Q ss_pred HHHHHHHHhhHHHHHHHHhcCCCceeccC
Q 041336 369 EEALMVETFGERYLEYASKVRHKFIPFVY 397 (397)
Q Consensus 369 EEr~L~~~FGeeY~eY~krVpyRLIP~Iw 397 (397)
--+..+++| + ||-+ -|+++||+||
T Consensus 127 ~h~wY~~~F-~---~yp~-~R~~lIPfi~ 150 (150)
T PF02544_consen 127 THRWYKKKF-K---EYPK-NRKALIPFIF 150 (150)
T ss_pred HHHHHHHHC-c---cccC-CCeEecCccC
Confidence 666677776 4 4554 3568999997
No 14
>KOG1638 consensus Steroid reductase [Lipid transport and metabolism]
Probab=97.60 E-value=0.0039 Score=60.93 Aligned_cols=173 Identities=19% Similarity=0.266 Sum_probs=101.8
Q ss_pred CcchhhHHHHHHHHHHHhhhhhhhhhhccccccccCCCCCCCCCCchHHHHHHH------HHHHHHHHHhhhcccccccC
Q 041336 205 YLEGWPFVFFFVYHYFFFFNVSVRKRLYGDYYAREHDPRWDINTPTWCRILFTI------GVMAGHWLVAFEGPELHRIP 278 (397)
Q Consensus 205 y~~aW~yl~~~~~~~~~~~~~~l~~r~~g~~~~r~hD~~~~~~~~~wdkvLl~~------ai~lg~~l~a~~~p~l~~l~ 278 (397)
++.+=+....|+.||+ ....+ .|=+ .| +. ++.++.-+++++ +.+.+.|..... +..+-.-
T Consensus 79 ~~~~~~L~~~flvHYf--~R~li---ypf~--~~---~~---~~~p~~i~a~a~~F~~~NG~lqg~y~~~~~-~~~d~~~ 144 (257)
T KOG1638|consen 79 LPPGLLLLSAFLVHYF--HRALI---YPFL--IR---SS---NPSPAIIVALAIAFCTLNGTLQGLYLSHYQ-LYEDPWV 144 (257)
T ss_pred ccccHHHHHHHHHHHH--HHHHh---heee--ec---CC---CCccHHHHHHHHHHHHhhHHHHHHHHHhcc-cccCCCc
Confidence 5888888888999998 32222 2222 33 11 234443233322 222333433221 1111101
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHhhhccccccCCCeeeeccccccccChHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 041336 279 GGLNNVGMWILIVLTLLMQYNSTLYLAKYSEKVVVPTAVVQFGPYRWVRHPIYASTMLLFVTYCIALRAPLSLLFLVAVC 358 (397)
Q Consensus 279 ~~ws~lg~~lLIlaGlll~~~~~l~l~r~~~~v~~~~~LVTtGpYr~VRHPmYlG~iLl~lG~aL~lgS~~aLll~~v~~ 358 (397)
..+..+-+.++.+.|..+...+...+.+-..+-.++-++=+.|.|.++--|+|+|+++-++|.++...|+-++.++.. .
T Consensus 145 ~~~r~liG~~lfv~Gm~iN~~sD~iL~~LRk~~~~~YkIP~GglFeyVsCPNYfgEiieW~Gyal~~ws~p~~aFa~f-t 223 (257)
T KOG1638|consen 145 TDIRFLIGVVLFVTGMLINIYSDNILRTLRKPGGKGYKIPRGGLFEYVSCPNYFGEIIEWIGYALASWSLPALAFAFF-T 223 (257)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHhhcCCCCceecCCCceEEEeecchHHHHHHHHHHHHHHhhhHHHHHHHHH-H
Confidence 122333444556667777776654443322222234577889999999999999999999999999888766665432 3
Q ss_pred HHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCCceeccC
Q 041336 359 LVYYEQKAKLEEALMVETFGERYLEYASKVRHKFIPFVY 397 (397)
Q Consensus 359 ~i~~~~rI~~EEr~L~~~FGeeY~eY~krVpyRLIP~Iw 397 (397)
...+.-|+..--+.-.++| |||. + .|+.+||+||
T Consensus 224 ~~~l~pRA~ahH~WY~~kF-e~YP---k-~RkAlIPfvf 257 (257)
T KOG1638|consen 224 ICNLGPRAYAHHKWYLKKF-EDYP---K-NRKALIPFVF 257 (257)
T ss_pred HHHhhHHHHHHHHHHHHhh-ccCC---c-cceeeccccC
Confidence 3445667777777778787 5554 3 4558999987
No 15
>PLN02560 enoyl-CoA reductase
Probab=97.44 E-value=0.00051 Score=68.83 Aligned_cols=105 Identities=13% Similarity=0.154 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHhhhcccc-ccCCCeeeeccccccccChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhH
Q 041336 288 ILIVLTLLMQYNSTLYLAKYSEK-VVVPTAVVQFGPYRWVRHPIYASTMLLFVTYCIALRAPLSLLFLVAVCLVYYEQKA 366 (397)
Q Consensus 288 lLIlaGlll~~~~~l~l~r~~~~-v~~~~~LVTtGpYr~VRHPmYlG~iLl~lG~aL~lgS~~aLll~~v~~~i~~~~rI 366 (397)
++.+.|.+..+.+...+..-..+ -..+.++=..|.|.+|--|+|+++++.++|++++++++.++++++.. ......++
T Consensus 199 ~lf~~~~~~N~~~h~~L~~LR~~~g~~~y~IP~g~lF~~VscPnY~~Ei~~W~gf~~~t~~~~~~~F~~~~-~~~m~~wA 277 (308)
T PLN02560 199 GFGLVCQLANFYCHIILRNLRKPDGKGGYQIPRGFLFNYVTCANYTTEIYQWLGFNIATQTVAGYLFLAVA-AAIMTNWA 277 (308)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCeeCCCCCCcCeecCCcHHHHHHHHHHHHHHHccHHHHHHHHHH-HHHHHHHH
Confidence 34445555555554444432211 12245666778999999999999999999999999887776665443 33345567
Q ss_pred HHHHHHHHHHhhH--HHHHHHHhcCCCceec
Q 041336 367 KLEEALMVETFGE--RYLEYASKVRHKFIPF 395 (397)
Q Consensus 367 ~~EEr~L~~~FGe--eY~eY~krVpyRLIP~ 395 (397)
..-+|..+++||+ +.++|.+ ++..+|.
T Consensus 278 ~~kh~~Y~k~F~d~~~~~~yp~--~~~~~pp 306 (308)
T PLN02560 278 LAKHRRLKKLFDGKDGRPKYPR--RWVILPP 306 (308)
T ss_pred HHHHHHHHHhccCccccccCCC--ceEeCCC
Confidence 7777888889977 3455775 3455554
No 16
>PLN03164 3-oxo-5-alpha-steroid 4-dehydrogenase, C-terminal domain containing protein; Provisional
Probab=97.30 E-value=0.0015 Score=66.12 Aligned_cols=105 Identities=20% Similarity=0.316 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcc--ccccCCCeeeeccccccccChHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHH
Q 041336 288 ILIVLTLLMQYNSTLYLAKYS--EKVVVPTAVVQFGPYRWVRHPIYASTMLLFVTYCIALRA-PLSLLFLVAVCLVYYEQ 364 (397)
Q Consensus 288 lLIlaGlll~~~~~l~l~r~~--~~v~~~~~LVTtGpYr~VRHPmYlG~iLl~lG~aL~lgS-~~aLll~~v~~~i~~~~ 364 (397)
++.+.|-...+.+...+++-. .+..++.++=..|.|++|--|+|+++++.++|++++.++ .........++...+..
T Consensus 216 ~lFlig~~~n~~~H~iLa~LR~~k~~~~~Y~IP~GglF~~VSCPHYf~EIliw~gfal~t~~~~~~~~l~~~~v~~nL~~ 295 (323)
T PLN03164 216 AIFLWGWIHQYRCHAILGSLREHKKQADEYVIPYGDWFEMVSCPHYLAEIVIYAGLLIASGGTDLTIWLLFGFVVANLTF 295 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHcCcCCCCCceEECCCCCCcCeEcCCcHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHH
Confidence 344455555555555554432 111234567788999999999999999999999999763 22222222222333445
Q ss_pred hHHHHHHHHHHHhhHHHHHHHHhcCCCceeccC
Q 041336 365 KAKLEEALMVETFGERYLEYASKVRHKFIPFVY 397 (397)
Q Consensus 365 rI~~EEr~L~~~FGeeY~eY~krVpyRLIP~Iw 397 (397)
++..-.+..+++| +| |-+ -|+.+||+||
T Consensus 296 ~A~~tHkWY~kkF-~d---YPk-~RkAIIPfI~ 323 (323)
T PLN03164 296 AAAETHRWYLQKF-EN---YPR-NRYAIIPFVY 323 (323)
T ss_pred HHHHHHHHHHHhc-cc---ccc-CceEecCccC
Confidence 6666667777777 34 554 3468999986
No 17
>COG4094 Predicted membrane protein [Function unknown]
Probab=95.93 E-value=0.012 Score=56.33 Aligned_cols=78 Identities=15% Similarity=0.194 Sum_probs=60.4
Q ss_pred CeeeeccccccccChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCCcee
Q 041336 315 TAVVQFGPYRWVRHPIYASTMLLFVTYCIALRAPLSLLFLVAVCLVYYEQKAKLEEALMVETFGERYLEYASKVRHKFIP 394 (397)
Q Consensus 315 ~~LVTtGpYr~VRHPmYlG~iLl~lG~aL~lgS~~aLll~~v~~~i~~~~rI~~EEr~L~~~FGeeY~eY~krVpyRLIP 394 (397)
+.+-.+|+=|.+|||+.+|..++.+|-.+..|..-+++....+. ..-...+..-||+.++++||++..=+++++ -+|
T Consensus 96 ~~~~~g~Ii~itRHP~l~g~~iWalaHll~nGd~~Svllfggf~-l~~~~~~~~~~rR~r~r~g~a~~~~~~~ts--~~p 172 (219)
T COG4094 96 QHLYEGRIIRITRHPQLLGVVIWALAHLLANGDTFSVLLFGGFL-LWAVVGVWSGDRRARKRYGEAFVAPVQVTS--RIP 172 (219)
T ss_pred ccccCCceEEEecCchhHHHHHHHHHHhhccCceeeHHHHHHHH-HHHHHHhhhhhhhhhcccCcceeeeecccc--ccc
Confidence 44566788899999999999999999999988776666544432 233445667788899999999999888887 355
Q ss_pred c
Q 041336 395 F 395 (397)
Q Consensus 395 ~ 395 (397)
+
T Consensus 173 f 173 (219)
T COG4094 173 F 173 (219)
T ss_pred h
Confidence 4
No 18
>KOG4142 consensus Phospholipid methyltransferase [Lipid transport and metabolism]
Probab=93.82 E-value=0.45 Score=44.74 Aligned_cols=72 Identities=25% Similarity=0.382 Sum_probs=53.5
Q ss_pred HhhhccccccCCCeeeeccccccccChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Q 041336 303 YLAKYSEKVVVPTAVVQFGPYRWVRHPIYASTMLLFVTYCIALRAPLSLLFLVAVCLVYYEQKAKLEEALMVETF 377 (397)
Q Consensus 303 ~l~r~~~~v~~~~~LVTtGpYr~VRHPmYlG~iLl~lG~aL~lgS~~aLll~~v~~~i~~~~rI~~EEr~L~~~F 377 (397)
++|.+++-. .+.+ ||.=|+-..-||||-|..+.++|++++-+.+-++++.+.+ ...+....+.||..-.+-|
T Consensus 125 yLGDYFGiL-~~eR-VtgFPFNv~dNPMY~GSTl~fLg~Al~~gkpaGLllt~~V-~f~Y~iAL~~EEPFTA~IY 196 (208)
T KOG4142|consen 125 YLGDYFGIL-KEER-VTGFPFNVLDNPMYWGSTLNFLGWALMHGKPAGLLLTVLV-AFTYIIALLYEEPFTAEIY 196 (208)
T ss_pred hhhhhhhhh-hhhh-cccccccccCCcccccchHHHHHHHHHcCCcchhHHHHHH-HHHHHHHHHhcCchHHHHH
Confidence 455554322 1233 6888999999999999999999999999999888776543 4455666788988766554
No 19
>PLN02797 phosphatidyl-N-dimethylethanolamine N-methyltransferase
Probab=91.82 E-value=0.36 Score=44.64 Aligned_cols=59 Identities=17% Similarity=0.292 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHhhh-------ccccccCCCeeeeccccccccChHHHHHHHHHHHHHHHhhhH
Q 041336 287 WILIVLTLLMQYNSTLYLAK-------YSEKVVVPTAVVQFGPYRWVRHPIYASTMLLFVTYCIALRAP 348 (397)
Q Consensus 287 ~lLIlaGlll~~~~~l~l~r-------~~~~v~~~~~LVTtGpYr~VRHPmYlG~iLl~lG~aL~lgS~ 348 (397)
+.++..|..+.+.....+|- +++... ..||.=||.+.+||||.|.++.++|.++.....
T Consensus 70 ~~L~aiGq~Lv~ss~~~LG~tGTYlGdyFGilm---~~VT~FPFnv~~nPmY~GStl~fLg~al~~p~~ 135 (164)
T PLN02797 70 WPLFAFGQFLNFRVYQLLGEAGTYYGVRFGKNI---PWVTEFPFGVIRDPQYVGSILSLLACLSWVPFQ 135 (164)
T ss_pred HHHHHHhhHHHHHHHHHhCCceeeehhhhcccc---cccccCCCCCCCCcchhhHHHHHHHHHHHhhHH
Confidence 34556677777766554443 333222 368999999999999999999999999987443
No 20
>KOG1640 consensus Predicted steroid reductase [Lipid transport and metabolism]
Probab=90.90 E-value=1.4 Score=44.46 Aligned_cols=78 Identities=19% Similarity=0.333 Sum_probs=49.2
Q ss_pred CCeeeeccccccccChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCCce
Q 041336 314 PTAVVQFGPYRWVRHPIYASTMLLFVTYCIALRAPLSLLFLVAVCLVYYEQKAKLEEALMVETFGERYLEYASKVRHKFI 393 (397)
Q Consensus 314 ~~~LVTtGpYr~VRHPmYlG~iLl~lG~aL~lgS~~aLll~~v~~~i~~~~rI~~EEr~L~~~FGeeY~eY~krVpyRLI 393 (397)
...+-+.|.++++--|.|++++.+..|++....++.-++ .+.++..-....+..--+.-.++| ++|-+ -|+.+|
T Consensus 227 ~~~ip~g~~F~~Vs~Ph~L~Ei~iY~~ia~~~~~~~iwL-v~~~V~~N~t~aA~~Th~wY~~kF----~~yp~-~R~Aii 300 (304)
T KOG1640|consen 227 AYLIPKGGWFKLVSCPHYLAEIIIYVGIALGAPDLTIWL-VFGWVAANLTYAALETHRWYLKKF----ENYPK-NRHAII 300 (304)
T ss_pred heecCCCCEeeecCChHHHHHHHHHHHHHhcCCchHHHH-HHHHHHHHHHHHHHHHHHHHHHhh----ccCcc-cccccc
Confidence 456788999999999999999999999776655432221 112222222223333334556555 44544 456899
Q ss_pred eccC
Q 041336 394 PFVY 397 (397)
Q Consensus 394 P~Iw 397 (397)
|+++
T Consensus 301 Pfl~ 304 (304)
T KOG1640|consen 301 PFLY 304 (304)
T ss_pred cccC
Confidence 9986
No 21
>KOG1639 consensus Steroid reductase required for elongation of the very long chain fatty acids [Lipid transport and metabolism]
Probab=76.87 E-value=3.4 Score=41.29 Aligned_cols=73 Identities=21% Similarity=0.321 Sum_probs=49.4
Q ss_pred eecc-ccccccChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCCceecc
Q 041336 318 VQFG-PYRWVRHPIYASTMLLFVTYCIALRAPLSLLFLVAVCLVYYEQKAKLEEALMVETFGERYLEYASKVRHKFIPFV 396 (397)
Q Consensus 318 VTtG-pYr~VRHPmYlG~iLl~lG~aL~lgS~~aLll~~v~~~i~~~~rI~~EEr~L~~~FGeeY~eY~krVpyRLIP~I 396 (397)
+-+| .+-++--|+|+-++..++|+.+++.++-+.++..+...-|... +....+...+ |+.+|-++-. -++|++
T Consensus 224 ~~~g~lFnlvscpNYt~Ev~sWi~F~i~tq~l~a~lFl~vg~aqMtiW-A~~Kh~~ylK----eFp~Ypr~r~-~iiPFv 297 (297)
T KOG1639|consen 224 LPDGFLFNLVSCPNYTYEVGSWIGFAIMTQCLAAYLFLTVGAAQMTIW-AKGKHRRYLK----EFPDYPRRRK-IIIPFV 297 (297)
T ss_pred cCCccEEEEEecCCcceehHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHhHhh----hcccCCcccc-ccCCCC
Confidence 3455 7889999999999999999999999876666655444444433 3334444444 4566765543 577764
No 22
>PF12576 DUF3754: Protein of unknown function (DUF3754); InterPro: IPR022227 This domain family is found in bacteria, archaea and eukaryotes, and is typically between 135 and 166 amino acids in length. There is a single completely conserved residue P that may be functionally important.
Probab=69.00 E-value=13 Score=33.25 Aligned_cols=78 Identities=19% Similarity=0.326 Sum_probs=48.8
Q ss_pred CCCCCccccccccccchhhHHhhh----hcccccchhhhhh--HHHHHHHhhhhhhheeechhHHHHHHHHHHHHHHHHH
Q 041336 86 PDSSQKTLLEPFKNLSVDKIKTAV----LKLTPFDIIKWSS--ILSIAIAATKWTVNLVLNPFFWMYFSWTWLFWPWYVA 159 (397)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (397)
+..+.+=.+|-|||+..++++..+ .+++|+|-++.-. +.+..+.+.| ++.....++--++ ++...
T Consensus 29 ~~~~~~i~lK~FkdIP~aDLE~llP~~kv~~~~~D~~~l~~~~vvg~v~~~~~----~~~~~~~~~~~~~-----~~~~~ 99 (141)
T PF12576_consen 29 KFKPGPIYLKSFKDIPMADLEMLLPEKKVRMRPFDRVKLGVSAVVGGVAVFVK----LVGMSLLLLSDIF-----LILIL 99 (141)
T ss_pred cCCCCCeEEEEeCCCCccchhHhCCCCcCCcCHHHHHHHHHHHHHHHHHHHHH----HhhhHHHHHHHHH-----HHHHH
Confidence 334477789999999999997644 7899999988744 4444333333 2222222222222 55556
Q ss_pred HHHHhhhhHHHHh
Q 041336 160 IALGVYGLYCFRK 172 (397)
Q Consensus 160 ~~~~~~~~~~~~~ 172 (397)
+++++-|.||++.
T Consensus 100 ~~l~~~~~~~~r~ 112 (141)
T PF12576_consen 100 SLLSALGGYAFRQ 112 (141)
T ss_pred HHHHHHHHHHHHH
Confidence 6666667788875
No 23
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=36.01 E-value=47 Score=25.59 Aligned_cols=22 Identities=41% Similarity=0.916 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhhhhHHHHhh
Q 041336 152 LFWPWYVAIALGVYGLYCFRKQ 173 (397)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~ 173 (397)
+-|=|.+-|+|-+.|-||-.|.
T Consensus 3 iawywivli~lv~~gy~~hmkr 24 (54)
T PF13260_consen 3 IAWYWIVLIVLVVVGYFCHMKR 24 (54)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888888885443
No 24
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=31.87 E-value=2.6e+02 Score=33.73 Aligned_cols=49 Identities=27% Similarity=0.517 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHH---HHHhhhccc--ccc----CCCeeeeccccccccChHHH
Q 041336 284 VGMWILIVLTLLMQYNS---TLYLAKYSE--KVV----VPTAVVQFGPYRWVRHPIYA 332 (397)
Q Consensus 284 lg~~lLIlaGlll~~~~---~l~l~r~~~--~v~----~~~~LVTtGpYr~VRHPmYl 332 (397)
+|-.+++....++.+.. .+..|++.. .++ .+..=+..-+||||||=.-+
T Consensus 1260 IgnIvliccaffiiFgilgvqLFkgkfy~c~g~dtrnitnKSdc~aa~yRwvrhkyNf 1317 (1956)
T KOG2302|consen 1260 IGNIVLICCAFFIIFGILGVQLFKGKFYHCLGVDTRNITNKSDCMAAPYRWVRHKYNF 1317 (1956)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccceeccccccccccchhhhcccchhhhhhhccc
Confidence 33344444455554443 245566642 111 12223455899999997544
No 25
>PF11084 DUF2621: Protein of unknown function (DUF2621); InterPro: IPR020203 This entry represents a group of uncharacterised proteins.
Probab=30.51 E-value=67 Score=29.38 Aligned_cols=29 Identities=31% Similarity=0.693 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHhhc
Q 041336 146 YFSWTWLFWPWYVAIALGVYGLYCFRKQS 174 (397)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (397)
.|.|--+||........+++|.+.|||-.
T Consensus 5 wFm~fI~~W~~vli~l~~IGGfFMFRKFL 33 (141)
T PF11084_consen 5 WFMWFILFWVVVLIGLMAIGGFFMFRKFL 33 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 46788999999999999999999999944
No 26
>PHA01929 putative scaffolding protein
Probab=29.28 E-value=46 Score=33.69 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhcC
Q 041336 366 AKLEEALMVETFGERYLEYASKVR 389 (397)
Q Consensus 366 I~~EEr~L~~~FGeeY~eY~krVp 389 (397)
...+|++|+|++|++|.+|..++-
T Consensus 153 rfIDe~yL~E~LGe~~A~~~i~vA 176 (306)
T PHA01929 153 RFIDTHYLKEVLGEAQAQHVINVA 176 (306)
T ss_pred hhhHHHHHHHHHhHHHHHHHHHHH
Confidence 356899999999999999988764
No 27
>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]
Probab=29.05 E-value=7.1e+02 Score=26.34 Aligned_cols=85 Identities=24% Similarity=0.214 Sum_probs=52.5
Q ss_pred echhHHHHHHH-------HHHHHHHHHHHHHHhhhhHHHHhhccchhHHHHHHHHHHHHHHHHHHhcCcccc-CCcchhh
Q 041336 139 LNPFFWMYFSW-------TWLFWPWYVAIALGVYGLYCFRKQSLGEASIFEQLAIVTSLFTWLTLVPPAVFN-GYLEGWP 210 (397)
Q Consensus 139 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~i~~~~~~~lll~~pAGtl-~y~~aW~ 210 (397)
+.|.|||..== ..+||+--.++...+-. .|++++|-..+ .++.-...++..|-||. |=.=||.
T Consensus 97 lAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvp-----p~~~~~Aiaiv----~~G~tlA~v~GvPLGt~ig~~~GWR 167 (394)
T COG2814 97 LAPSFAVLLLARALAGLAHGVFWSIAAALAARLVP-----PGKRGRALALV----FTGLTLATVLGVPLGTFLGQLFGWR 167 (394)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----ccchhhHHHHH----HHHHHHHHHHhccHHHHHHHHhhHH
Confidence 56778887533 35677765555544433 55566654433 34444456677888887 6667898
Q ss_pred HHHHHHHHHHHhhhhhhhhhhc
Q 041336 211 FVFFFVYHYFFFFNVSVRKRLY 232 (397)
Q Consensus 211 yl~~~~~~~~~~~~~~l~~r~~ 232 (397)
..+..+...-...-.++....|
T Consensus 168 ~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 168 ATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 8877655554334457777788
No 28
>PF12270 Cyt_c_ox_IV: Cytochrome c oxidase subunit IV; InterPro: IPR021050 This family of proteins is found in bacteria. Proteins in this family are approximately 140 amino acids in length. This family is the fourth subunit of the cytochrome c oxidase complex. This subunit does not have a catalytic capacity but instead, is required for assembly and/or stability of the complex []. ; GO: 0004129 cytochrome-c oxidase activity, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=28.83 E-value=4.6e+02 Score=24.03 Aligned_cols=24 Identities=21% Similarity=0.088 Sum_probs=17.2
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHh
Q 041336 174 SLGEASIFEQLAIVTSLFTWLTLV 197 (397)
Q Consensus 174 ~~~~~~~~~q~~i~~~~~~~lll~ 197 (397)
||.|+|++.-+.+...+++.+=-+
T Consensus 1 Mk~ea~lF~~l~~Ff~~~~~vY~~ 24 (137)
T PF12270_consen 1 MKVEAKLFYGLAVFFLVVAVVYGF 24 (137)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888777777776666555
No 29
>PF14147 Spore_YhaL: Sporulation protein YhaL
Probab=24.90 E-value=3.1e+02 Score=21.34 Aligned_cols=19 Identities=26% Similarity=0.247 Sum_probs=13.2
Q ss_pred HHHHHHhHHHHHHHHHHHh
Q 041336 359 LVYYEQKAKLEEALMVETF 377 (397)
Q Consensus 359 ~i~~~~rI~~EEr~L~~~F 377 (397)
-.+...+...||+.+.++|
T Consensus 15 S~ym~v~t~~eE~~~dq~~ 33 (52)
T PF14147_consen 15 SGYMAVKTAKEEREIDQEF 33 (52)
T ss_pred HHHHHHHHHHHHHHhHHHH
Confidence 3445667888888887665
No 30
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=21.14 E-value=8.6e+02 Score=24.54 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=17.6
Q ss_pred eeccccccccChHHHHHHHHHHHHH
Q 041336 318 VQFGPYRWVRHPIYASTMLLFVTYC 342 (397)
Q Consensus 318 VTtGpYr~VRHPmYlG~iLl~lG~a 342 (397)
-|.||+++.+||. |++..+++++
T Consensus 135 YT~gP~~l~y~gL--GE~~v~l~~G 157 (304)
T PRK07419 135 YQGPPFRLGYQGL--GEPLCFLAFG 157 (304)
T ss_pred ccCCCcccCCCCc--hHHHHHHHHH
Confidence 4679999999994 8877665543
No 31
>TIGR02908 CoxD_Bacillus cytochrome c oxidase, subunit IVB. This model represents a small clade of cytochrome oxidase subunit IV's found in the Bacilli.
Probab=20.10 E-value=73 Score=28.16 Aligned_cols=40 Identities=15% Similarity=0.174 Sum_probs=30.0
Q ss_pred hhhHHHHhhccchhHHHHHHHHHHHHHHHHHHhcCccccCC
Q 041336 165 YGLYCFRKQSLGEASIFEQLAIVTSLFTWLTLVPPAVFNGY 205 (397)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~q~~i~~~~~~~lll~~pAGtl~y 205 (397)
-=|+||. ||.+..+...++.++.++|.+++.+..+-++-|
T Consensus 70 VqL~yFL-Hm~~k~~~~~~~~if~gi~va~~tv~a~~~~iw 109 (110)
T TIGR02908 70 FQLYYFM-HMKDKGHEVPAQFIYGGVFVTMLVVLAFTTITW 109 (110)
T ss_pred HHHHHhe-eeCCCccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467775 787888889999999999988888755544444
Done!