Query 041336
Match_columns 397
No_of_seqs 311 out of 1383
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 09:59:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041336.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041336hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a2n_B Isoprenylcysteine carbo 99.9 4.5E-24 1.5E-28 196.1 17.8 115 281-396 76-193 (194)
2 3r5y_A Putative uncharacterize 21.0 46 0.0016 29.1 2.2 21 373-395 121-141 (147)
3 1vk5_A Expressed protein; stru 19.4 34 0.0012 30.2 1.0 22 366-389 32-53 (157)
4 2jo8_A Serine/threonine-protei 19.3 35 0.0012 25.3 0.9 20 95-114 5-24 (51)
5 3r5z_A Putative uncharacterize 15.2 64 0.0022 28.1 1.8 21 373-395 119-139 (145)
6 1p58_D Envelope protein M; fla 14.9 1.6E+02 0.0053 23.2 3.8 19 325-344 36-54 (75)
7 3r5l_A Deazaflavin-dependent n 12.7 23 0.00078 30.0 -1.8 21 373-395 97-117 (122)
8 1tv8_A MOAA, molybdenum cofact 9.8 1.9E+02 0.0063 27.0 3.3 40 73-112 23-62 (340)
9 3b5o_A CADD-like protein of un 8.9 1.8E+02 0.0063 27.6 2.9 40 90-134 26-65 (244)
10 3j27_B Matrix protein, small e 8.2 1.9E+02 0.0065 22.7 2.2 15 326-341 37-51 (75)
No 1
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=99.92 E-value=4.5e-24 Score=196.09 Aligned_cols=115 Identities=26% Similarity=0.385 Sum_probs=95.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhccc---cccCCCeeeeccccccccChHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 041336 281 LNNVGMWILIVLTLLMQYNSTLYLAKYSE---KVVVPTAVVQFGPYRWVRHPIYASTMLLFVTYCIALRAPLSLLFLVAV 357 (397)
Q Consensus 281 ws~lg~~lLIlaGlll~~~~~l~l~r~~~---~v~~~~~LVTtGpYr~VRHPmYlG~iLl~lG~aL~lgS~~aLll~~v~ 357 (397)
|....+.++.++|+.++.++..++++.+. +++++++++|+|+|+++|||||+|++++++|+++.++++++++..++.
T Consensus 76 ~~~~~G~~l~l~G~~l~~~a~~~Lg~~f~~~~~~~~~~~Lvt~G~y~~vRHP~Y~G~~l~~~g~~l~~~s~~~~~~~~~~ 155 (194)
T 4a2n_B 76 SIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILSNWVVLIFGIVA 155 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHGGGCCSSCCEETTCCCCCSSTTTTBSSHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCeeeecCcchhccCccHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 44445566777899999998888877643 345789999999999999999999999999999999998887643333
Q ss_pred HHHHHHHhHHHHHHHHHHHhhHHHHHHHHhcCCCceecc
Q 041336 358 CLVYYEQKAKLEEALMVETFGERYLEYASKVRHKFIPFV 396 (397)
Q Consensus 358 ~~i~~~~rI~~EEr~L~~~FGeeY~eY~krVpyRLIP~I 396 (397)
...++..++..||+.|+++||++|++||+||| |++|+|
T Consensus 156 ~~~~~~~ri~~EE~~L~~~fG~~Y~~Y~~rv~-r~iP~i 193 (194)
T 4a2n_B 156 WAILYFIRVPKEEELLIEEFGDEYIEYMGKTG-RLFPKV 193 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHCB-SSSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHhCC-eeCcee
Confidence 33445689999999999999999999999999 999987
No 2
>3r5y_A Putative uncharacterized protein; PA-824, nitroimidazoles, split barrel-like fold, DUF385, DEA dependent nitroreductase, unknown function; HET: F42; 1.80A {Nocardia farcinica}
Probab=20.98 E-value=46 Score=29.13 Aligned_cols=21 Identities=33% Similarity=0.760 Sum_probs=16.8
Q ss_pred HHHHhhHHHHHHHHhcCCCceec
Q 041336 373 MVETFGERYLEYASKVRHKFIPF 395 (397)
Q Consensus 373 L~~~FGeeY~eY~krVpyRLIP~ 395 (397)
+.+.+ ++|.+|++++. |-||-
T Consensus 121 ~~~~~-P~y~~Yq~~t~-R~IPv 141 (147)
T 3r5y_A 121 AVRAY-PTYQEYQDNTR-RLIPV 141 (147)
T ss_dssp HHHHC-THHHHHHHTCS-SCCCE
T ss_pred HHHHC-CCHHHHHhhcC-CcCcE
Confidence 44566 67999999998 78885
No 3
>1vk5_A Expressed protein; structural genomics, unknown function, protein structur initiative, center for eukaryotic structural genomics, CESG; HET: CPS; 1.60A {Arabidopsis thaliana} SCOP: a.220.1.1 PDB: 2q3t_A* 3gan_A*
Probab=19.37 E-value=34 Score=30.22 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHhcC
Q 041336 366 AKLEEALMVETFGERYLEYASKVR 389 (397)
Q Consensus 366 I~~EEr~L~~~FGeeY~eY~krVp 389 (397)
+..|+..+++ .+-|++|+++.|
T Consensus 32 ~~~e~~liRr--AEmYQ~YMK~iP 53 (157)
T 1vk5_A 32 VADEGSLLRR--AEMYQDYMKQVP 53 (157)
T ss_dssp ----CTTHHH--HHHHHHHHHTSC
T ss_pred cCcchhhhhH--HHHHHHHHHhCC
Confidence 3445555555 488999999998
No 4
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens}
Probab=19.30 E-value=35 Score=25.29 Aligned_cols=20 Identities=30% Similarity=0.569 Sum_probs=16.0
Q ss_pred ccccccchhhHHhhhhcccc
Q 041336 95 EPFKNLSVDKIKTAVLKLTP 114 (397)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~ 114 (397)
+.+||+|++++...+..|.|
T Consensus 5 ~fLk~ls~eEL~~rl~~Ld~ 24 (51)
T 2jo8_A 5 EFLKSWTVEDLQKRLLALDP 24 (51)
T ss_dssp GGGGGSCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHccH
Confidence 78899999999887755544
No 5
>3r5z_A Putative uncharacterized protein; split barrel-like fold, DUF385, deazaflavin-dependent reduct F420-dependent reductase, FDR; HET: F42; 1.50A {Nocardia farcinica}
Probab=15.16 E-value=64 Score=28.12 Aligned_cols=21 Identities=38% Similarity=0.665 Sum_probs=16.6
Q ss_pred HHHHhhHHHHHHHHhcCCCceec
Q 041336 373 MVETFGERYLEYASKVRHKFIPF 395 (397)
Q Consensus 373 L~~~FGeeY~eY~krVpyRLIP~ 395 (397)
+.+.+ ++|.+|++++. |-||-
T Consensus 119 ~~~~~-p~y~~Yq~~t~-R~iPv 139 (145)
T 3r5z_A 119 AVEVW-PDYAEYQTKTT-REIPV 139 (145)
T ss_dssp HHHHC-THHHHHGGGCS-SCCCE
T ss_pred HHHHC-cCHHHHHHhcC-CcCce
Confidence 44556 68999999998 78884
No 6
>1p58_D Envelope protein M; flavivirus, flaviviridae, glycoprotein E from borne encephalitis virus, membrane protein M, cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico} SCOP: i.17.1.1
Probab=14.91 E-value=1.6e+02 Score=23.19 Aligned_cols=19 Identities=26% Similarity=0.534 Sum_probs=14.2
Q ss_pred cccChHHHHHHHHHHHHHHH
Q 041336 325 WVRHPIYASTMLLFVTYCIA 344 (397)
Q Consensus 325 ~VRHPmYlG~iLl~lG~aL~ 344 (397)
..|||.|+-... .+|+.+-
T Consensus 36 ilrNp~~al~a~-~~~w~lG 54 (75)
T 1p58_D 36 ILRHPGFTIMAA-ILAYTIG 54 (75)
T ss_pred HHHChHHHHHHH-HHHHHHc
Confidence 369999998877 6777443
No 7
>3r5l_A Deazaflavin-dependent nitroreductase; PA-824, split barrel-like fold, DUF385, deazaflavin-dependen nitroreductase, nitroimidazoles; HET: MES; 1.55A {Mycobacterium tuberculosis} PDB: 3r5p_A 3r5w_A* 3r5r_A*
Probab=12.65 E-value=23 Score=30.01 Aligned_cols=21 Identities=29% Similarity=0.602 Sum_probs=16.8
Q ss_pred HHHHhhHHHHHHHHhcCCCceec
Q 041336 373 MVETFGERYLEYASKVRHKFIPF 395 (397)
Q Consensus 373 L~~~FGeeY~eY~krVpyRLIP~ 395 (397)
+.++| ++|.+|++++. |-||-
T Consensus 97 ~~~~~-p~y~~yq~~t~-R~ipv 117 (122)
T 3r5l_A 97 LVTMY-PSYQDYQSWTD-RTIPI 117 (122)
T ss_dssp HHHHC-TTCCCTTGGGC-TTSCE
T ss_pred HHHHC-cCHHHHHhhcC-CcccE
Confidence 45667 67999999998 78884
No 8
>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*
Probab=9.85 E-value=1.9e+02 Score=27.02 Aligned_cols=40 Identities=10% Similarity=0.087 Sum_probs=25.9
Q ss_pred ccCcccccCCCCCCCCCCccccccccccchhhHHhhhhcc
Q 041336 73 LSPVKCSLSDSASPDSSQKTLLEPFKNLSVDKIKTAVLKL 112 (397)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (397)
-|+-+|.|+..........++.+.-+.+|.|++++.+-++
T Consensus 23 ~CNl~C~yC~~~~~~~~~~~~~~~~~~ls~e~i~~~i~~~ 62 (340)
T 1tv8_A 23 RCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVY 62 (340)
T ss_dssp CCSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHH
T ss_pred CcCCcCCCCCcCcccCCCcccCCccCCCCHHHHHHHHHHH
Confidence 4778899997754322123344556778999998766443
No 9
>3b5o_A CADD-like protein of unknown function; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2, oxidoreductase; HET: MSE; 1.35A {Nostoc punctiforme} PDB: 3b5p_A*
Probab=8.92 E-value=1.8e+02 Score=27.57 Aligned_cols=40 Identities=8% Similarity=0.093 Sum_probs=31.6
Q ss_pred CccccccccccchhhHHhhhhcccccchhhhhhHHHHHHHhhhhh
Q 041336 90 QKTLLEPFKNLSVDKIKTAVLKLTPFDIIKWSSILSIAIAATKWT 134 (397)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (397)
+|||+..++..|++.+|.-+.|.. .++-+||.+++-+-..
T Consensus 26 ~hP~l~~~~~a~~~ql~~f~~Q~s-----~F~ryL~~l~~~~~~~ 65 (244)
T 3b5o_A 26 ENPVVQMLSQASFAQIAYVMQQYS-----IFPKELVGFTELARRK 65 (244)
T ss_dssp TCTTGGGTTTCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHhccHHHHHHHHHHHH-----HHHHHHHHHHhhcccc
Confidence 799999999999999999888877 5577777776644333
No 10
>3j27_B Matrix protein, small envelope protein M; flavivirus, fusion protein, protein complex, membrane, chape virus; HET: NAG; 3.60A {Dengue virus 2} PDB: 3j2p_B* 1p58_D
Probab=8.24 E-value=1.9e+02 Score=22.67 Aligned_cols=15 Identities=27% Similarity=0.667 Sum_probs=12.1
Q ss_pred ccChHHHHHHHHHHHH
Q 041336 326 VRHPIYASTMLLFVTY 341 (397)
Q Consensus 326 VRHPmYlG~iLl~lG~ 341 (397)
.|||.|+-.+.+ +|+
T Consensus 37 lrNp~~al~~~~-~~w 51 (75)
T 3j27_B 37 LRHPGFTIMAAI-LAY 51 (75)
T ss_dssp HHCCTHHHHHHH-HHH
T ss_pred HHChHHHHHHHH-HHH
Confidence 699999987776 666
Done!