Query 041336
Match_columns 397
No_of_seqs 311 out of 1383
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 10:00:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041336.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041336hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tv8a_ c.1.28.3 (A:) Molybden 13.2 52 0.0038 27.7 2.9 44 74-117 22-65 (327)
2 d2h8aa1 f.56.1.1 (A:9-147) Mic 12.0 58 0.0043 25.5 2.7 25 140-164 1-25 (139)
3 d2dmda3 g.37.1.1 (A:62-90) Zin 8.2 26 0.0019 21.3 -0.7 16 75-90 3-18 (29)
4 d2fg1a1 c.50.1.2 (A:2-155) Hyp 6.4 1.2E+02 0.009 23.0 2.4 15 372-386 37-51 (154)
5 d1nu9c1 a.8.6.1 (C:1-145) Stap 6.3 2.2E+02 0.016 23.0 3.9 24 363-386 63-86 (145)
6 d1x5wa2 g.37.1.1 (A:36-64) Zin 5.6 80 0.0059 19.2 0.6 10 75-84 2-11 (29)
7 d1fs1a1 a.158.1.1 (A:109-149) 4.8 1.8E+02 0.013 17.7 2.0 25 97-121 1-25 (41)
8 d1t4wa_ b.2.5.2 (A:) Transcrip 4.4 56 0.004 27.3 -1.1 14 24-37 45-58 (196)
9 d1uc8a1 c.30.1.6 (A:1-88) Lysi 4.2 1.2E+02 0.0087 21.9 0.8 14 364-377 7-20 (88)
10 d1rmda1 g.37.1.1 (A:87-116) V( 4.1 79 0.0058 19.4 -0.2 17 23-39 11-27 (30)
No 1
>d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]}
Probab=13.17 E-value=52 Score=27.66 Aligned_cols=44 Identities=9% Similarity=0.136 Sum_probs=29.6
Q ss_pred cCcccccCCCCCCCCCCccccccccccchhhHHhhhhcccccch
Q 041336 74 SPVKCSLSDSASPDSSQKTLLEPFKNLSVDKIKTAVLKLTPFDI 117 (397)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (397)
|.-+|+|+......+....+...-+.+|+|++|..+-++....+
T Consensus 22 CNlrC~~C~~~~~~~~~~~~~~~~~~ls~e~~~~li~~~~~~g~ 65 (327)
T d1tv8a_ 22 CNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGV 65 (327)
T ss_dssp CSCCCTTTSCTTTSSTTCCCCCGGGSCCHHHHHHHHHHHHHTTC
T ss_pred cCCcCcCCCCccccCCCCccCCccccCCHHHHHHHHHHHHHcCC
Confidence 77789999765444434455555566899999988766655443
No 2
>d2h8aa1 f.56.1.1 (A:9-147) Microsomal glutathione S-transferase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=11.95 E-value=58 Score=25.54 Aligned_cols=25 Identities=8% Similarity=0.153 Sum_probs=21.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHh
Q 041336 140 NPFFWMYFSWTWLFWPWYVAIALGV 164 (397)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (397)
||.|..|+-|+.+..-++.++++-.
T Consensus 1 n~~f~~ya~~~~iL~lkm~~m~~lt 25 (139)
T d2h8aa1 1 NEVLMAFTSYATIILAKMMFLSSAT 25 (139)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHGGGS
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999998888776543
No 3
>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.23 E-value=26 Score=21.33 Aligned_cols=16 Identities=50% Similarity=0.748 Sum_probs=12.4
Q ss_pred CcccccCCCCCCCCCC
Q 041336 75 PVKCSLSDSASPDSSQ 90 (397)
Q Consensus 75 ~~~~~~~~~~~~~~~~ 90 (397)
|-||.+++-+|-+|+|
T Consensus 3 pfkcqlcsy~srnssq 18 (29)
T d2dmda3 3 PFKCQICPYASRNSSQ 18 (29)
T ss_dssp CEECSSSSCEESSHHH
T ss_pred cceeeecccccCCchh
Confidence 6788888888887753
No 4
>d2fg1a1 c.50.1.2 (A:2-155) Hypothetical protein BT1257 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=6.40 E-value=1.2e+02 Score=23.00 Aligned_cols=15 Identities=7% Similarity=0.078 Sum_probs=9.7
Q ss_pred HHHHHhhHHHHHHHH
Q 041336 372 LMVETFGERYLEYAS 386 (397)
Q Consensus 372 ~L~~~FGeeY~eY~k 386 (397)
.++++||+.|++|++
T Consensus 37 ai~~~~p~~~~~~~~ 51 (154)
T d2fg1a1 37 ALSKKWKMPEEAYRQ 51 (154)
T ss_dssp HHHHHCSHHHHHHHH
T ss_pred HHHHHcCcHHHHHHH
Confidence 466778866666554
No 5
>d1nu9c1 a.8.6.1 (C:1-145) Staphylocoagulase {Staphylococcus aureus [TaxId: 1280]}
Probab=6.33 E-value=2.2e+02 Score=23.03 Aligned_cols=24 Identities=21% Similarity=0.263 Sum_probs=18.1
Q ss_pred HHhHHHHHHHHHHHhhHHHHHHHH
Q 041336 363 EQKAKLEEALMVETFGERYLEYAS 386 (397)
Q Consensus 363 ~~rI~~EEr~L~~~FGeeY~eY~k 386 (397)
..|+..||..|.++=-++|+.|++
T Consensus 63 mtrvlgeDqYLlekK~~~ye~yk~ 86 (145)
T d1nu9c1 63 MTRILGEDQYLLERKKVQYEEYKK 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Confidence 457888999988765577887765
No 6
>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.58 E-value=80 Score=19.17 Aligned_cols=10 Identities=30% Similarity=0.693 Sum_probs=7.1
Q ss_pred CcccccCCCC
Q 041336 75 PVKCSLSDSA 84 (397)
Q Consensus 75 ~~~~~~~~~~ 84 (397)
|-|||+++-.
T Consensus 2 PFkC~~CsFD 11 (29)
T d1x5wa2 2 PFKCNYCSFD 11 (29)
T ss_dssp SEECSSSSCE
T ss_pred Ccccceeccc
Confidence 6688888643
No 7
>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.80 E-value=1.8e+02 Score=17.70 Aligned_cols=25 Identities=16% Similarity=0.130 Sum_probs=18.6
Q ss_pred ccccchhhHHhhhhcccccchhhhh
Q 041336 97 FKNLSVDKIKTAVLKLTPFDIIKWS 121 (397)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (397)
|.+|+-|=+-.++..|+|.|+++.+
T Consensus 1 f~~LP~eil~~If~~L~~~dl~~~~ 25 (41)
T d1fs1a1 1 WDSLPDELLLGIFSCLCLPELLKVS 25 (41)
T ss_dssp CCSSCHHHHHHHHTTSCGGGHHHHH
T ss_pred CCcCCHHHHHHHHHcCCHHHHHHHH
Confidence 3566667677788999999977644
No 8
>d1t4wa_ b.2.5.2 (A:) Transcription factor CEP-1 {Caenorhabditis elegans [TaxId: 6239]}
Probab=4.40 E-value=56 Score=27.25 Aligned_cols=14 Identities=50% Similarity=0.674 Sum_probs=11.0
Q ss_pred CCcccccchhhhhh
Q 041336 24 PKISFRHFNKRLQL 37 (397)
Q Consensus 24 ~~~~~~~~~~~~~~ 37 (397)
-|+|=|||||++-.
T Consensus 45 w~~~~~hfn~~l~l 58 (196)
T d1t4wa_ 45 WKLDKRHFNSNLSL 58 (196)
T ss_dssp EECCTTTTTCCCEE
T ss_pred EeecccccccceeE
Confidence 46888999998743
No 9
>d1uc8a1 c.30.1.6 (A:1-88) Lysine biosynthesis enzyme LysX, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=4.20 E-value=1.2e+02 Score=21.88 Aligned_cols=14 Identities=14% Similarity=0.375 Sum_probs=11.3
Q ss_pred HhHHHHHHHHHHHh
Q 041336 364 QKAKLEEALMVETF 377 (397)
Q Consensus 364 ~rI~~EEr~L~~~F 377 (397)
.+++.|||.|.+.+
T Consensus 7 ~~~R~eEk~L~~a~ 20 (88)
T d1uc8a1 7 DRIRPDERMLFERA 20 (88)
T ss_dssp SSCCHHHHHHHHHH
T ss_pred ccccHHHHHHHHHH
Confidence 35678999999876
No 10
>d1rmda1 g.37.1.1 (A:87-116) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=4.13 E-value=79 Score=19.43 Aligned_cols=17 Identities=12% Similarity=0.430 Sum_probs=14.3
Q ss_pred CCCcccccchhhhhhhc
Q 041336 23 SPKISFRHFNKRLQLQN 39 (397)
Q Consensus 23 ~~~~~~~~~~~~~~~~~ 39 (397)
+..+|+.-+|.|+-+|-
T Consensus 11 ~eEvsleKYnhHvSsHK 27 (30)
T d1rmda1 11 NEEVSLEKYNHHVSSHK 27 (30)
T ss_dssp CCEEEHHHHHHHHHTSC
T ss_pred cchhchhhhcchhhccc
Confidence 46789999999998883
Done!