Query 041338
Match_columns 269
No_of_seqs 208 out of 1387
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 10:01:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041338.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041338hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.5 2.1E-06 7.3E-11 66.9 12.5 67 169-235 37-104 (110)
2 2i68_A Protein EMRE; transmemb 98.4 9.5E-07 3.3E-11 71.8 8.4 68 167-234 34-103 (137)
3 2kv5_A FST, putative uncharact 4.7 3.4E+02 0.011 16.1 1.4 13 221-233 8-20 (33)
4 3aqp_A Probable secdf protein- 3.9 2.4E+03 0.083 20.6 9.8 15 178-192 609-623 (741)
5 4dve_A Biotin transporter BIOY 3.5 1.2E+03 0.04 19.0 4.4 72 160-234 15-87 (198)
6 3l1l_A Arginine/agmatine antip 3.0 2.2E+03 0.075 18.4 8.4 15 241-255 411-425 (445)
7 1xkm_A Distinctin chain A; por 2.9 7E+02 0.024 13.5 1.6 13 185-197 4-16 (26)
8 3b9w_A Ammonium transporter fa 2.6 2.7E+03 0.094 18.8 12.4 20 200-219 220-239 (407)
9 2hac_A T-cell surface glycopro 2.5 7.4E+02 0.025 14.6 1.4 17 199-215 13-29 (33)
10 2jp3_A FXYD domain-containing 2.0 1.1E+03 0.038 16.1 2.0 14 220-233 24-37 (67)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.49 E-value=2.1e-06 Score=66.94 Aligned_cols=67 Identities=15% Similarity=0.190 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHH-hhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhccc
Q 041338 169 AVAHTLGNLLTNISLVTVNVSFTHTI-KAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASLT 235 (269)
Q Consensus 169 gll~~~~~~l~n~AL~~vsvs~~~ii-kal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~~ 235 (269)
.+++.+...+...++++++++.+..+ .++.|+++++++++++||++++.+++|++++++|+++....
T Consensus 37 ~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 37 IICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 34466778899999999999999888 89999999999999999999999999999999999987653
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.39 E-value=9.5e-07 Score=71.82 Aligned_cols=68 Identities=15% Similarity=0.164 Sum_probs=50.2
Q ss_pred HHHHH-HHHHHHHHHHHHhhcCHHHHHHH-hhhhHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhhhhcc
Q 041338 167 PLAVA-HTLGNLLTNISLVTVNVSFTHTI-KAMEPFFTVLFAALFLGEKPTIWLASSLVPIVGGVALASL 234 (269)
Q Consensus 167 ~lgll-~~~~~~l~n~AL~~vsvs~~~ii-kal~Pvftvils~l~lgEr~t~~~~lgl~lii~GV~l~~~ 234 (269)
.++++ +.+..++.+.++++++++.+..+ .++.|+++++++++++||++++.+++|++++++||++...
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINL 103 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34444 56678899999999999999888 8999999999999999999999999999999999998754
No 3
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=4.75 E-value=3.4e+02 Score=16.11 Aligned_cols=13 Identities=31% Similarity=0.549 Sum_probs=9.4
Q ss_pred HHHHHHHhhhhhc
Q 041338 221 SLVPIVGGVALAS 233 (269)
Q Consensus 221 gl~lii~GV~l~~ 233 (269)
-++++++|+++..
T Consensus 8 IIaPivVGvvl~L 20 (33)
T 2kv5_A 8 VIAPIFVGLVLEM 20 (33)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4678888888753
No 4
>3aqp_A Probable secdf protein-export membrane protein; translocon, cell membrane, MEM protein transport, translocation, transmembrane, transport; 3.30A {Thermus thermophilus} PDB: 2rrn_A
Probab=3.90 E-value=2.4e+03 Score=20.56 Aligned_cols=15 Identities=20% Similarity=0.169 Sum_probs=6.0
Q ss_pred HHHHHHhhcCHHHHH
Q 041338 178 LTNISLVTVNVSFTH 192 (269)
Q Consensus 178 l~n~AL~~vsvs~~~ 192 (269)
+..+++-..+.....
T Consensus 609 ~g~l~l~g~~l~~~~ 623 (741)
T 3aqp_A 609 AGMYSLLGLEFSIPT 623 (741)
T ss_dssp HHHHHHHTCCCCHHH
T ss_pred HHHHHHHhcCccHHH
Confidence 333344444443333
No 5
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=3.46 E-value=1.2e+03 Score=19.02 Aligned_cols=72 Identities=14% Similarity=0.109 Sum_probs=29.0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCC-CHHHHHHHHHHHHhhhhhcc
Q 041338 160 SQFAVILPLAVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKP-TIWLASSLVPIVGGVALASL 234 (269)
Q Consensus 160 ~~~~~ll~lgll~~~~~~l~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~-t~~~~lgl~lii~GV~l~~~ 234 (269)
++.+.+...+++-++..++...+ .++.++.-+=-.++.+++++.+ .++|.|. .....+=+++..+|+=+...
T Consensus 15 ~k~r~l~~~alfaAliavla~i~--~Ipip~~pVPiTlQtl~V~LaG-~~LG~r~G~lsv~lYlllG~~GlPVFag 87 (198)
T 4dve_A 15 QKVKTLTYSAFMTAFIIILGFLP--GIPIGFIPVPIILQNMGIMMAG-GLLGPKYGTISVGAFLALALIGLPVLTG 87 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSC--CBCCSSSSCCBCSTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTCCCBTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--cCCCCCCCcCccHHHHHHHHHH-HHHChhHHHHHHHHHHHHHHHcCccccC
Confidence 34555555555544433333221 1222222111224444444444 4444333 23333334445555544443
No 6
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=2.98 E-value=2.2e+03 Score=18.37 Aligned_cols=15 Identities=13% Similarity=0.096 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHH
Q 041338 241 WTGFCSAMASNVTNQ 255 (269)
Q Consensus 241 ~~G~~~alls~~~~a 255 (269)
..|..+.+++...|.
T Consensus 411 ~~~~~~~~~g~~~y~ 425 (445)
T 3l1l_A 411 MWSFVTLMVITAMYA 425 (445)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 456555555554444
No 7
>1xkm_A Distinctin chain A; pore-forming peptide, heterodimer, structure, homodimer, disulfide, four-helix bundle, antibiotic; NMR {Synthetic} SCOP: j.4.1.6
Probab=2.94 E-value=7e+02 Score=13.49 Aligned_cols=13 Identities=38% Similarity=0.488 Sum_probs=8.4
Q ss_pred hcCHHHHHHHhhh
Q 041338 185 TVNVSFTHTIKAM 197 (269)
Q Consensus 185 ~vsvs~~~iikal 197 (269)
.++++++.+||.+
T Consensus 4 evppgftaliktl 16 (26)
T 1xkm_A 4 EVPPGFTALIKTL 16 (26)
T ss_dssp CSCHHHHHHHHHH
T ss_pred cCCCcHHHHHHHH
Confidence 3567777777654
No 8
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=2.63 E-value=2.7e+03 Score=18.80 Aligned_cols=20 Identities=30% Similarity=0.293 Sum_probs=11.1
Q ss_pred HHHHHHHHHhhCCCCCHHHH
Q 041338 200 FFTVLFAALFLGEKPTIWLA 219 (269)
Q Consensus 200 vftvils~l~lgEr~t~~~~ 219 (269)
+-.+++++++.++|++....
T Consensus 220 l~~~~~~~~~~~gK~~~~~~ 239 (407)
T 3b9w_A 220 LATYFLSALFHKGKASIVDM 239 (407)
T ss_dssp HHHHHHHHHHTTTCCCHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHH
Confidence 33344555545677776544
No 9
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=2.45 E-value=7.4e+02 Score=14.58 Aligned_cols=17 Identities=35% Similarity=0.499 Sum_probs=9.0
Q ss_pred HHHHHHHHHHhhCCCCC
Q 041338 199 PFFTVLFAALFLGEKPT 215 (269)
Q Consensus 199 Pvftvils~l~lgEr~t 215 (269)
-++.+++..++.+||+.
T Consensus 13 ~iYgii~T~Ly~R~K~~ 29 (33)
T 2hac_A 13 FIYGVILTALFLRVKFS 29 (33)
T ss_dssp HHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34455555555555554
No 10
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=2.02 E-value=1.1e+03 Score=16.08 Aligned_cols=14 Identities=29% Similarity=0.278 Sum_probs=7.3
Q ss_pred HHHHHHHHhhhhhc
Q 041338 220 SSLVPIVGGVALAS 233 (269)
Q Consensus 220 lgl~lii~GV~l~~ 233 (269)
++.++.++|++++.
T Consensus 24 fA~vLfi~GI~iil 37 (67)
T 2jp3_A 24 FGGLLCIAGIALAL 37 (67)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 34455556655543
Done!