Query 041338
Match_columns 269
No_of_seqs 208 out of 1387
Neff 6.6
Searched_HMMs 13730
Date Mon Mar 25 10:01:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041338.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041338hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2r6gf1 e.70.1.1 (F:13-260) Ma 17.0 2.3E+02 0.017 22.3 8.2 54 164-221 4-57 (248)
2 d2e74g1 f.23.26.1 (G:9-35) Pet 8.6 1.5E+02 0.011 15.2 3.0 18 242-259 3-20 (27)
3 d1ddga1 b.43.4.1 (A:226-446) S 5.0 1.3E+02 0.0092 22.9 1.6 23 13-35 155-177 (221)
4 d1ja1a1 b.43.4.1 (A:240-518) N 3.9 1.7E+02 0.012 23.3 1.6 23 13-35 209-231 (279)
5 d1f20a1 b.43.4.1 (A:963-1232) 3.6 1.8E+02 0.013 22.8 1.6 23 13-35 205-227 (270)
6 d1uptb_ a.193.1.1 (B:) Golgi a 2.5 2.6E+02 0.019 17.1 1.0 20 203-222 11-30 (58)
7 d1pv7a_ f.38.1.2 (A:) Lactose 2.2 1.1E+03 0.079 16.8 5.8 19 212-230 284-302 (417)
8 d1wz3a1 d.15.1.7 (A:10-93) Aut 2.0 3.2E+02 0.023 17.9 0.9 20 12-31 12-31 (84)
9 d2axtl1 f.23.31.1 (L:1-37) Pho 1.9 6.8E+02 0.049 13.5 2.9 16 242-257 19-34 (37)
10 d2pila_ d.24.1.1 (A:) Pilin Gc 1.8 6.4E+02 0.046 16.1 2.5 10 222-231 8-17 (158)
No 1
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=17.01 E-value=2.3e+02 Score=22.26 Aligned_cols=54 Identities=15% Similarity=0.065 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhhhhHHHHHHHHHHhhCCCCCHHHHHH
Q 041338 164 VILPLAVAHTLGNLLTNISLVTVNVSFTHTIKAMEPFFTVLFAALFLGEKPTIWLASS 221 (269)
Q Consensus 164 ~ll~lgll~~~~~~l~n~AL~~vsvs~~~iikal~Pvftvils~l~lgEr~t~~~~lg 221 (269)
+++.+|++.++..++....+..-+-.++.+ .-+.++++.++++.+|.-+++|+-
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a~~----~~~~~~~~~~vy~s~r~~p~kyi~ 57 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFAIT----TLILSSAGLYIFANRKAYAWRYVY 57 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHHHH----HHHHHHHHHHHHSSSCCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHHH----HHHHHHheEEEEEccCccceehhh
Confidence 456778877777666666666666555433 345567777888888888888854
No 2
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=8.62 E-value=1.5e+02 Score=15.18 Aligned_cols=18 Identities=11% Similarity=0.047 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041338 242 TGFCSAMASNVTNQSRNV 259 (269)
Q Consensus 242 ~G~~~alls~~~~al~~V 259 (269)
.|.+.+-++.++|+.|.-
T Consensus 3 lgli~~tl~glf~aayqq 20 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 577777788888887753
No 3
>d1ddga1 b.43.4.1 (A:226-446) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]}
Probab=5.01 E-value=1.3e+02 Score=22.95 Aligned_cols=23 Identities=22% Similarity=0.135 Sum_probs=18.6
Q ss_pred ccccccccccccCCCCCCccccc
Q 041338 13 TPILKRRFCLILSSSSLEPADLA 35 (269)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~ 35 (269)
+|.++||.....|++..+|-+.+
T Consensus 155 lp~l~PR~YSIsSSp~~~p~~i~ 177 (221)
T d1ddga1 155 LRPLTPRLYSIASSQAEVENEVH 177 (221)
T ss_dssp SCBCCCEEEEBCCCTTTSCSEEE
T ss_pred hhccCceeeeeccccccCCCeee
Confidence 78899999888888877776554
No 4
>d1ja1a1 b.43.4.1 (A:240-518) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.89 E-value=1.7e+02 Score=23.27 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=19.2
Q ss_pred ccccccccccccCCCCCCccccc
Q 041338 13 TPILKRRFCLILSSSSLEPADLA 35 (269)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~ 35 (269)
+|.++||.....|+++.+|-+.+
T Consensus 209 lp~L~PR~YSISSSp~~~p~~v~ 231 (279)
T d1ja1a1 209 LPRLQARYYAIASSSKVHPNSVH 231 (279)
T ss_dssp SCBCCCEEEECCSCTTTCTTEEE
T ss_pred CccCCCceeeEecCcccCCCEEE
Confidence 78899999988888888887665
No 5
>d1f20a1 b.43.4.1 (A:963-1232) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=3.64 E-value=1.8e+02 Score=22.82 Aligned_cols=23 Identities=26% Similarity=0.465 Sum_probs=18.8
Q ss_pred ccccccccccccCCCCCCccccc
Q 041338 13 TPILKRRFCLILSSSSLEPADLA 35 (269)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~ 35 (269)
+|.++||.....|++..+|-+.+
T Consensus 205 lp~L~PR~YSIsSSp~~~p~~v~ 227 (270)
T d1f20a1 205 LSLLQPRYYSISSSPDMYPDEVH 227 (270)
T ss_dssp SCBCCCEEEECCSCTTTSTTEEE
T ss_pred ccccccceeEEecCccCCCCEEE
Confidence 78899999888888887777655
No 6
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.51 E-value=2.6e+02 Score=17.09 Aligned_cols=20 Identities=25% Similarity=0.203 Sum_probs=14.2
Q ss_pred HHHHHHhhCCCCCHHHHHHH
Q 041338 203 VLFAALFLGEKPTIWLASSL 222 (269)
Q Consensus 203 vils~l~lgEr~t~~~~lgl 222 (269)
+++.++..+|..+..++++.
T Consensus 11 vLfeYMmG~E~~tlaKVi~a 30 (58)
T d1uptb_ 11 VLFEYMMGRETKTMAKVITT 30 (58)
T ss_dssp HHHHHHTTSSHHHHHHHHHH
T ss_pred HHHHHHcCcchhHHHHHHHH
Confidence 56777777788777776654
No 7
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=2.19 E-value=1.1e+03 Score=16.82 Aligned_cols=19 Identities=16% Similarity=-0.141 Sum_probs=9.3
Q ss_pred CCCCHHHHHHHHHHHHhhh
Q 041338 212 EKPTIWLASSLVPIVGGVA 230 (269)
Q Consensus 212 Er~t~~~~lgl~lii~GV~ 230 (269)
+|..++..+.+...+.++.
T Consensus 284 ~r~~~~~~~~~~~~~~~~~ 302 (417)
T d1pv7a_ 284 NRIGGKNALLLAGTIMSVR 302 (417)
T ss_dssp HHHCHHHHHHHHHHHHHHH
T ss_pred cccccccchhhhHHHHHHh
Confidence 5555555544444444443
No 8
>d1wz3a1 d.15.1.7 (A:10-93) Autophagy-related protein 12b (APG12b) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=1.96 E-value=3.2e+02 Score=17.90 Aligned_cols=20 Identities=25% Similarity=0.338 Sum_probs=13.9
Q ss_pred CccccccccccccCCCCCCc
Q 041338 12 STPILKRRFCLILSSSSLEP 31 (269)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~ 31 (269)
+.|.+||+.+....+-++.-
T Consensus 12 ~aPilk~~~~kv~~~~~f~~ 31 (84)
T d1wz3a1 12 GAPILKQSKFKVSGSDKFAN 31 (84)
T ss_dssp TCCCCSCCEEEEETTSBTHH
T ss_pred CCcccccceEEECCCCchHH
Confidence 68899999887655444443
No 9
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=1.89 E-value=6.8e+02 Score=13.48 Aligned_cols=16 Identities=13% Similarity=0.032 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 041338 242 TGFCSAMASNVTNQSR 257 (269)
Q Consensus 242 ~G~~~alls~~~~al~ 257 (269)
+|.++++.-++.++.|
T Consensus 19 ~GlLlifvl~vLFssY 34 (37)
T d2axtl1 19 LGLLLILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666665555555544
No 10
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=1.78 E-value=6.4e+02 Score=16.12 Aligned_cols=10 Identities=20% Similarity=0.331 Sum_probs=4.7
Q ss_pred HHHHHHhhhh
Q 041338 222 LVPIVGGVAL 231 (269)
Q Consensus 222 l~lii~GV~l 231 (269)
++++++|++.
T Consensus 8 VViaIIgILa 17 (158)
T d2pila_ 8 IVIAIVGILA 17 (158)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4444455443
Done!