BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041339
(203 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 138 bits (348), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 78/168 (46%), Positives = 100/168 (59%), Gaps = 6/168 (3%)
Query: 39 LQVGFYRGKCGIADVEMIVAGVVTARFIRDPTVVAALIRLQFHDCFVNGCDASILIDAT- 97
LQ+GFY C A E +V V A F + + LIR+ FHDCFV GCDAS+L+D+T
Sbjct: 2 LQIGFYNTSCPTA--ESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTA 59
Query: 98 --NSEKTAIPN-LTIRGYDIIDEAKAAVEGFCPGVVSCADLIAIAARDAVFLGGGGRYEV 154
+EK AIPN ++RG+++I AK+AVE CP VSCAD++A AARD+ L G Y+V
Sbjct: 60 NNTAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQV 119
Query: 155 QTGRRDGLVSLAQXXXXXXXXXXXXXXQTMAVFANKGLNLTDMVLLMG 202
+GRRDG VSLA Q + FANK L +MV L G
Sbjct: 120 PSGRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSG 167
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 132 bits (333), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/133 (51%), Positives = 89/133 (66%), Gaps = 2/133 (1%)
Query: 71 VVAALIRLQFHDCFVNGCDASILIDATNSEKTAIPNL-TIRGYDIIDEAKAAVEGFCPGV 129
+ A+LIRL FHDCFVNGCDAS+L+D +SEK AIPN+ + RG+++ID KAAVE CPGV
Sbjct: 32 MAASLIRLHFHDCFVNGCDASLLLDGADSEKLAIPNINSARGFEVIDTIKAAVENACPGV 91
Query: 130 VSCADLIAIAARDAVFLGGGGRYEVQTGRRDGLVSLAQXXXXXXXXXXXXXXQTMAVFAN 189
VSCAD++ +AARD+V L GG + V GR+DGLV+ Q +A F
Sbjct: 92 VSCADILTLAARDSVVLSGGPGWRVALGRKDGLVA-NQNSANNLPSPFEPLDAIIAKFVA 150
Query: 190 KGLNLTDMVLLMG 202
LN+TD+V L G
Sbjct: 151 VNLNITDVVALSG 163
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 73/168 (43%), Positives = 97/168 (57%), Gaps = 6/168 (3%)
Query: 39 LQVGFYRGKCGIADVEMIVAGVVTARFIRDPTVVAALIRLQFHDCFVNGCDASILIDATN 98
L FYR C ++ IV GV+ DP + A+L+RL FHDCFV GCD S+L++ T+
Sbjct: 2 LTPTFYRETC--PNLFPIVFGVIFDASFTDPRIGASLMRLHFHDCFVQGCDGSVLLNNTD 59
Query: 99 ---SEKTAIPNL-TIRGYDIIDEAKAAVEGFCPGVVSCADLIAIAARDAVFLGGGGRYEV 154
SE+ A+PN+ +IRG D++++ K AVE CP VSCAD++AIAA A LGGG + V
Sbjct: 60 TIESEQDALPNINSIRGLDVVNDIKTAVENSCPDTVSCADILAIAAEIASVLGGGPGWPV 119
Query: 155 QTGRRDGLVSLAQXXXXXXXXXXXXXXQTMAVFANKGLNLTDMVLLMG 202
GRRD L + Q A FA +GLN D+V L G
Sbjct: 120 PLGRRDSLTANRTLANQNLPAPFFNLTQLKASFAVQGLNTLDLVTLSG 167
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/168 (39%), Positives = 95/168 (56%), Gaps = 6/168 (3%)
Query: 39 LQVGFYRGKCGIADVEMIVAGVVTARFIRDPTVVAALIRLQFHDCFVNGCDASILIDATN 98
L FY KC + + V + ++ + A+L+RL FHDCFV GCDAS+L+D T+
Sbjct: 2 LSSNFYATKC--PNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTS 59
Query: 99 S---EKTAIPNL-TIRGYDIIDEAKAAVEGFCPGVVSCADLIAIAARDAVFLGGGGRYEV 154
+ EKTA PN +IRG+++ID K+ VE CPGVVSCAD++A+AARD+V GG + V
Sbjct: 60 NFTGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNV 119
Query: 155 QTGRRDGLVSLAQXXXXXXXXXXXXXXQTMAVFANKGLNLTDMVLLMG 202
GRRD + ++ F+NKG ++V L G
Sbjct: 120 LLGRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSG 167
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 90/169 (53%), Gaps = 7/169 (4%)
Query: 39 LQVGFYRGKCGIADVEMIVAGVVTARFIRDPTVVAALIRLQFHDCFVNGCDASILIDATN 98
L FY C +V IV + DP + A+++RL FHDCFVNGCDASIL+D T
Sbjct: 3 LTPTFYDNSC--PNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTT 60
Query: 99 S---EKTAIPNL-TIRGYDIIDEAKAAVEGFCPGVVSCADLIAIAARDAVFLGGGGRYEV 154
S EK A N + RG+ +ID KAAVE CP VSCADL+ IAA+ +V L GG + V
Sbjct: 61 SFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 155 QTGRRDGLVSLAQXXXXXXXXXXXXXXQTMAVFANKGLNL-TDMVLLMG 202
GRRD L + Q F N GLN +D+V L G
Sbjct: 121 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSG 169
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 90/169 (53%), Gaps = 7/169 (4%)
Query: 39 LQVGFYRGKCGIADVEMIVAGVVTARFIRDPTVVAALIRLQFHDCFVNGCDASILIDATN 98
L FY C +V IV + DP + A+++RL FHDCFVNGCDASIL+D T
Sbjct: 3 LTPTFYDNSC--PNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTT 60
Query: 99 S---EKTAIPNL-TIRGYDIIDEAKAAVEGFCPGVVSCADLIAIAARDAVFLGGGGRYEV 154
S EK A N + RG+ +ID KAAVE CP VSCADL+ IAA+ +V L GG + V
Sbjct: 61 SFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 155 QTGRRDGLVSLAQXXXXXXXXXXXXXXQTMAVFANKGLNL-TDMVLLMG 202
GRRD L + Q F N GLN +D+V L G
Sbjct: 121 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSG 169
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 90/169 (53%), Gaps = 7/169 (4%)
Query: 39 LQVGFYRGKCGIADVEMIVAGVVTARFIRDPTVVAALIRLQFHDCFVNGCDASILIDATN 98
L FY C +V IV + DP + A+++RL FHDCFVNGCDASIL+D T
Sbjct: 3 LTPTFYDNSC--PNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTT 60
Query: 99 S---EKTAIPNL-TIRGYDIIDEAKAAVEGFCPGVVSCADLIAIAARDAVFLGGGGRYEV 154
S EK A N + RG+ +ID KAAVE CP VSCADL+ IAA+ +V L GG + V
Sbjct: 61 SFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 155 QTGRRDGLVSLAQXXXXXXXXXXXXXXQTMAVFANKGLNL-TDMVLLMG 202
GRRD L + Q F N GLN +D+V L G
Sbjct: 121 PLGRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSG 169
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 90/169 (53%), Gaps = 7/169 (4%)
Query: 39 LQVGFYRGKCGIADVEMIVAGVVTARFIRDPTVVAALIRLQFHDCFVNGCDASILIDATN 98
L FY C +V IV + DP + A+++RL FHDCFVNGCDASIL+D T
Sbjct: 2 LTPTFYDNSC--PNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTT 59
Query: 99 S---EKTAIPNL-TIRGYDIIDEAKAAVEGFCPGVVSCADLIAIAARDAVFLGGGGRYEV 154
S EK A N + RG+ +ID KAAVE CP VSCADL+ IAA+ +V L GG + V
Sbjct: 60 SFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 155 QTGRRDGLVSLAQXXXXXXXXXXXXXXQTMAVFANKGLNL-TDMVLLMG 202
GRRD L + Q F N GLN +D+V L G
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYG 168
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 90/169 (53%), Gaps = 7/169 (4%)
Query: 39 LQVGFYRGKCGIADVEMIVAGVVTARFIRDPTVVAALIRLQFHDCFVNGCDASILIDATN 98
L FY C +V IV + DP + A+++RL FHDCFVNGCDASIL+D T
Sbjct: 2 LTPTFYDNSC--PNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTT 59
Query: 99 S---EKTAIPNL-TIRGYDIIDEAKAAVEGFCPGVVSCADLIAIAARDAVFLGGGGRYEV 154
S EK A N + RG+ +ID KAAVE CP VSCADL+ IAA+ +V L GG + V
Sbjct: 60 SFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 155 QTGRRDGLVSLAQXXXXXXXXXXXXXXQTMAVFANKGLNL-TDMVLLMG 202
GRRD L + Q F N GLN +D+V L G
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSG 168
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 124 bits (310), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 90/169 (53%), Gaps = 7/169 (4%)
Query: 39 LQVGFYRGKCGIADVEMIVAGVVTARFIRDPTVVAALIRLQFHDCFVNGCDASILIDATN 98
L FY C +V IV + DP + A+++RL FHDCFVNGCDASIL+D T
Sbjct: 3 LTPTFYDNSC--PNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTT 60
Query: 99 S---EKTAIPNL-TIRGYDIIDEAKAAVEGFCPGVVSCADLIAIAARDAVFLGGGGRYEV 154
S EK A N + RG+ +ID KAAVE CP VSCADL+ IAA+ +V L GG + V
Sbjct: 61 SFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 155 QTGRRDGLVSLAQXXXXXXXXXXXXXXQTMAVFANKGLNL-TDMVLLMG 202
GRRD L + Q F N GLN +D+V L G
Sbjct: 121 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSG 169
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 124 bits (310), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 69/168 (41%), Positives = 91/168 (54%), Gaps = 6/168 (3%)
Query: 39 LQVGFYRGKCGIADVEMIVAGVVTARFIRDPTVVAALIRLQFHDCFVNGCDASILIDAT- 97
L FY G C + IV + D + A+LIRL FHDCFVNGCDASIL+D T
Sbjct: 3 LNATFYSGTC--PNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDDTG 60
Query: 98 --NSEKTAIPNL-TIRGYDIIDEAKAAVEGFCPGVVSCADLIAIAARDAVFLGGGGRYEV 154
SEK A PN+ + RG++++D K A+E CPGVVSC+D++A+A+ +V L GG + V
Sbjct: 61 SIQSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSWTV 120
Query: 155 QTGRRDGLVSLAQXXXXXXXXXXXXXXQTMAVFANKGLNLTDMVLLMG 202
GRRD L + F+ GLN D+V L G
Sbjct: 121 LLGRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSG 168
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 124 bits (310), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 90/169 (53%), Gaps = 7/169 (4%)
Query: 39 LQVGFYRGKCGIADVEMIVAGVVTARFIRDPTVVAALIRLQFHDCFVNGCDASILIDATN 98
L FY C +V IV + DP + A+++RL FHDCFVNGCDASIL+D T
Sbjct: 2 LTPTFYDNSC--PNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTT 59
Query: 99 S---EKTAIPNL-TIRGYDIIDEAKAAVEGFCPGVVSCADLIAIAARDAVFLGGGGRYEV 154
S EK A N + RG+ +ID KAAVE CP VSCADL+ IAA+ +V L GG + V
Sbjct: 60 SFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 155 QTGRRDGLVSLAQXXXXXXXXXXXXXXQTMAVFANKGLNL-TDMVLLMG 202
GRRD L + Q F N GLN +D+V L G
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSG 168
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 124 bits (310), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 90/169 (53%), Gaps = 7/169 (4%)
Query: 39 LQVGFYRGKCGIADVEMIVAGVVTARFIRDPTVVAALIRLQFHDCFVNGCDASILIDATN 98
L FY C +V IV + DP + A+++RL FHDCFVNGCDASIL+D T
Sbjct: 2 LTPTFYDNSC--PNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTT 59
Query: 99 S---EKTAIPNL-TIRGYDIIDEAKAAVEGFCPGVVSCADLIAIAARDAVFLGGGGRYEV 154
S EK A N + RG+ +ID KAAVE CP VSCADL+ IAA+ +V L GG + V
Sbjct: 60 SFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 155 QTGRRDGLVSLAQXXXXXXXXXXXXXXQTMAVFANKGLNL-TDMVLLMG 202
GRRD L + Q F N GLN +D+V L G
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSG 168
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 124 bits (310), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 90/169 (53%), Gaps = 7/169 (4%)
Query: 39 LQVGFYRGKCGIADVEMIVAGVVTARFIRDPTVVAALIRLQFHDCFVNGCDASILIDATN 98
L FY C +V IV + DP + A+++RL FHDCFVNGCDASIL+D T
Sbjct: 2 LTPTFYDNSC--PNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTT 59
Query: 99 S---EKTAIPNL-TIRGYDIIDEAKAAVEGFCPGVVSCADLIAIAARDAVFLGGGGRYEV 154
S EK A N + RG+ +ID KAAVE CP VSCADL+ IAA+ +V L GG + V
Sbjct: 60 SFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 155 QTGRRDGLVSLAQXXXXXXXXXXXXXXQTMAVFANKGLNL-TDMVLLMG 202
GRRD L + Q F N GLN +D+V L G
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSG 168
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 124 bits (310), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 69/170 (40%), Positives = 94/170 (55%), Gaps = 6/170 (3%)
Query: 37 GALQVGFYRGKCGIADVEMIVAGVVTARFIRDPTVVAALIRLQFHDCFVNGCDASILIDA 96
G+L FY G C + +V +V F D + A+LIRL FHDCFV GCDASIL+D
Sbjct: 2 GSLNATFYAGTC--PNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDN 59
Query: 97 TNS---EKTAIPNL-TIRGYDIIDEAKAAVEGFCPGVVSCADLIAIAARDAVFLGGGGRY 152
+ S EK A PN + RG++++D K A+E CPGVVSC D++A+A++ +V L GG +
Sbjct: 60 SGSIISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSW 119
Query: 153 EVQTGRRDGLVSLAQXXXXXXXXXXXXXXQTMAVFANKGLNLTDMVLLMG 202
V GRRD L + + F+ GLN D+V L G
Sbjct: 120 TVDLGRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSG 169
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 123 bits (309), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 73/169 (43%), Positives = 90/169 (53%), Gaps = 7/169 (4%)
Query: 39 LQVGFYRGKCGIADVEMIVAGVVTARFIRDPTVVAALIRLQFHDCFVNGCDASILIDATN 98
L FY C +V IV + DP + A+++RL FHDCFVNGCDASIL+D T
Sbjct: 3 LTPTFYDNSC--PNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTT 60
Query: 99 S---EKTAIPNL-TIRGYDIIDEAKAAVEGFCPGVVSCADLIAIAARDAVFLGGGGRYEV 154
S EK A N + RG+ +ID KAAVE CP VSCADL+ IAA+ +V L GG + V
Sbjct: 61 SFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 155 QTGRRDGLVSLAQXXXXXXXXXXXXXXQTMAVFANKGLNL-TDMVLLMG 202
GRRD L + Q F N GLN +D+V L G
Sbjct: 121 PLGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSG 169
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 120 bits (301), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 72/169 (42%), Positives = 89/169 (52%), Gaps = 7/169 (4%)
Query: 39 LQVGFYRGKCGIADVEMIVAGVVTARFIRDPTVVAALIRLQFHDCFVNGCDASILIDATN 98
L FY C +V IV + DP + A+++RL F DCFVNGCDASIL+D T
Sbjct: 3 LTPTFYDNSC--PNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDNTT 60
Query: 99 S---EKTAIPNL-TIRGYDIIDEAKAAVEGFCPGVVSCADLIAIAARDAVFLGGGGRYEV 154
S EK A N + RG+ +ID KAAVE CP VSCADL+ IAA+ +V L GG + V
Sbjct: 61 SFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 120
Query: 155 QTGRRDGLVSLAQXXXXXXXXXXXXXXQTMAVFANKGLNL-TDMVLLMG 202
GRRD L + Q F N GLN +D+V L G
Sbjct: 121 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSG 169
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 118 bits (295), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 71/169 (42%), Positives = 88/169 (52%), Gaps = 7/169 (4%)
Query: 39 LQVGFYRGKCGIADVEMIVAGVVTARFIRDPTVVAALIRLQFHDCFVNGCDASILIDATN 98
L FY C +V IV + DP + A+++ L F DCFVNGCDASIL+D T
Sbjct: 2 LTPTFYDNSC--PNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTT 59
Query: 99 S---EKTAIPNL-TIRGYDIIDEAKAAVEGFCPGVVSCADLIAIAARDAVFLGGGGRYEV 154
S EK A N + RG+ +ID KAAVE CP VSCADL+ IAA+ +V L GG + V
Sbjct: 60 SFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRV 119
Query: 155 QTGRRDGLVSLAQXXXXXXXXXXXXXXQTMAVFANKGLNL-TDMVLLMG 202
GRRD L + Q F N GLN +D+V L G
Sbjct: 120 PLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSG 168
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 77/128 (60%), Gaps = 8/128 (6%)
Query: 39 LQVGFYRGKCGIADVEMIVAGVVTARFIRDPTVVAALIRLQFHDCFVNGCDASILIDATN 98
L FY C A E IV V +D + A L+RL FHDCFV GCDAS+L+D +
Sbjct: 9 LSFDFYWQTCPRA--ESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSA 66
Query: 99 S---EKTAIPNLTIR--GYDIIDEAKAAVEGFCPG-VVSCADLIAIAARDAVFLGGGGRY 152
+ E+ A PNLT+R + +++ + +E C G VVSC+D++A+AARD+V + GG Y
Sbjct: 67 TGPGEQQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGGPDY 126
Query: 153 EVQTGRRD 160
V GRRD
Sbjct: 127 RVPLGRRD 134
>pdb|2Q2B|A Chain A, Crystal Structure Of The C-Terminal Domain Of Mouse
Acyl-Coa Thioesterase 7
pdb|2Q2B|B Chain B, Crystal Structure Of The C-Terminal Domain Of Mouse
Acyl-Coa Thioesterase 7
Length = 179
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 25 QCLLANIAGLSHGALQVGFYRGKCGIADVEMIVAGVVTARFIRDPTVVAALIRLQFHDCF 84
Q L ++ G S L GF G + ++ VAG+V AR + V A++ + FHD
Sbjct: 26 QSSLIHLVGPSDCTLH-GFVHGGVTMKLMDE-VAGIVAARHCKTNIVTASVDAINFHDKI 83
Query: 85 VNGC 88
GC
Sbjct: 84 RKGC 87
>pdb|2QQ2|A Chain A, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|B Chain B, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|C Chain C, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|D Chain D, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|E Chain E, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|F Chain F, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|G Chain G, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|H Chain H, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|I Chain I, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|J Chain J, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|K Chain K, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
pdb|2QQ2|L Chain L, Crystal Structure Of C-Terminal Domain Of Human Acyl-Coa
Thioesterase 7
Length = 193
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 25 QCLLANIAGLSHGALQVGFYRGKCGIADVEMIVAGVVTARFIRDPTVVAALIRLQFHDCF 84
Q L ++ G S L GF G + ++ VAG+V AR + V A++ + FHD
Sbjct: 42 QSSLIHLVGPSDCTLH-GFVHGGVTMKLMDE-VAGIVAARHCKTNIVTASVDAINFHDKI 99
Query: 85 VNGC 88
GC
Sbjct: 100 RKGC 103
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.140 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,830,298
Number of Sequences: 62578
Number of extensions: 161942
Number of successful extensions: 390
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 346
Number of HSP's gapped (non-prelim): 24
length of query: 203
length of database: 14,973,337
effective HSP length: 94
effective length of query: 109
effective length of database: 9,091,005
effective search space: 990919545
effective search space used: 990919545
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)