Query 041339
Match_columns 203
No_of_seqs 161 out of 1385
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 06:07:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041339.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041339hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 1.1E-62 2.3E-67 439.5 14.6 166 35-203 21-186 (324)
2 cd00693 secretory_peroxidase H 100.0 4.9E-58 1.1E-62 406.6 13.7 163 38-203 1-166 (298)
3 PF00141 peroxidase: Peroxidas 100.0 7.7E-50 1.7E-54 342.6 5.5 144 57-203 1-146 (230)
4 PLN02608 L-ascorbate peroxidas 100.0 7.6E-43 1.6E-47 307.9 12.4 136 56-203 16-159 (289)
5 cd00691 ascorbate_peroxidase A 100.0 8.2E-43 1.8E-47 303.2 12.0 145 51-203 10-161 (253)
6 PLN02364 L-ascorbate peroxidas 100.0 9.6E-42 2.1E-46 296.0 12.5 149 41-203 3-162 (250)
7 cd00692 ligninase Ligninase an 100.0 4E-41 8.8E-46 301.4 12.7 142 53-203 16-173 (328)
8 PLN02879 L-ascorbate peroxidas 100.0 5.6E-39 1.2E-43 278.7 12.8 138 54-203 17-162 (251)
9 cd00314 plant_peroxidase_like 100.0 1.5E-38 3.2E-43 275.0 11.2 143 56-203 2-158 (255)
10 cd08201 plant_peroxidase_like_ 100.0 2.3E-38 5.1E-43 275.7 5.4 130 59-202 29-166 (264)
11 cd00649 catalase_peroxidase_1 99.9 5E-26 1.1E-30 208.2 9.7 157 37-203 27-241 (409)
12 TIGR00198 cat_per_HPI catalase 99.9 9.5E-26 2.1E-30 217.7 9.8 158 36-203 36-250 (716)
13 PRK15061 catalase/hydroperoxid 99.9 6.9E-23 1.5E-27 197.4 9.9 158 36-203 38-254 (726)
14 cd08200 catalase_peroxidase_2 99.9 9.8E-22 2.1E-26 173.7 10.5 142 59-203 17-190 (297)
15 PRK15061 catalase/hydroperoxid 99.8 2.9E-18 6.3E-23 165.6 10.9 141 59-203 442-615 (726)
16 TIGR00198 cat_per_HPI catalase 99.8 2.9E-18 6.3E-23 166.1 10.0 140 57-203 430-603 (716)
17 COG0376 KatG Catalase (peroxid 99.4 3.2E-13 7E-18 127.0 7.0 125 70-202 93-264 (730)
18 COG0376 KatG Catalase (peroxid 96.3 0.014 3.1E-07 56.2 7.3 137 59-203 452-619 (730)
19 KOG4065 Uncharacterized conser 67.3 15 0.00032 29.3 5.1 59 20-81 4-73 (144)
20 COG3763 Uncharacterized protei 39.4 1.4E+02 0.0029 21.6 5.8 28 56-83 24-51 (71)
21 KOG0427 Ubiquitin conjugating 36.8 24 0.00052 28.5 1.8 45 20-83 111-159 (161)
22 PF08782 c-SKI_SMAD_bind: c-SK 33.6 12 0.00027 28.4 -0.3 15 79-94 4-18 (96)
23 PF08252 Leader_CPA1: arg-2/CP 30.9 7.6 0.00017 22.1 -1.3 8 5-12 15-22 (24)
24 PF04225 OapA: Opacity-associa 29.3 28 0.0006 25.4 1.0 21 181-201 11-31 (85)
25 PF07994 NAD_binding_5: Myo-in 29.2 2.3E+02 0.0049 25.5 7.0 95 55-192 132-226 (295)
26 PF14919 MTBP_mid: MDM2-bindin 28.5 65 0.0014 29.7 3.4 60 109-198 272-331 (342)
27 PRK13859 type IV secretion sys 26.6 41 0.00088 22.9 1.3 31 135-165 9-42 (55)
28 PF03744 BioW: 6-carboxyhexano 24.7 1.4E+02 0.003 26.2 4.7 105 86-190 107-234 (239)
29 PLN02438 inositol-3-phosphate 20.2 8.3E+02 0.018 24.0 9.7 103 86-197 220-332 (510)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=1.1e-62 Score=439.48 Aligned_cols=166 Identities=53% Similarity=0.902 Sum_probs=160.7
Q ss_pred ccCCCCCCcccCCCCCchHHHHHHHHHHHHHhcCccchhhhHHhhhccccccCCCceeeccCCcccccCCCCCCcchhhH
Q 041339 35 SHGALQVGFYRGKCGIADVEMIVAGVVTARFIRDPTVVAALIRLQFHDCFVNGCDASILIDATNSEKTAIPNLTIRGYDI 114 (203)
Q Consensus 35 ~~~~l~~~fY~~sC~~P~~e~iVr~~v~~~~~~d~~~a~~lLRL~FHDcfv~GcDgSill~~~~~E~~~~~N~gL~g~~~ 114 (203)
.+++|+++||++|| |++|+||+++|++++.+|++++|++||||||||||+||||||||+++..|+++++|.+|+||++
T Consensus 21 ~~~~L~~~fY~~sC--P~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~~~Ek~a~~N~~l~Gf~~ 98 (324)
T PLN03030 21 QGQGTRVGFYSTTC--PQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGSNTEKTALPNLLLRGYDV 98 (324)
T ss_pred hhccCccchhhCcC--CCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCCcccccCCCCcCcchHHH
Confidence 45679999999999 9999999999999999999999999999999999999999999997668999999999999999
Q ss_pred HHHHHHHHHhhCCCCCcHHHHHHHhhhhhhhhcCCcceeeccCccCCCCCccccccCCCCCCCCCHHHHHHHHHHCCCCc
Q 041339 115 IDEAKAAVEGFCPGVVSCADLIAIAARDAVFLGGGGRYEVQTGRRDGLVSLAQSVSISIPGPSASIPQTMAVFANKGLNL 194 (203)
Q Consensus 115 i~~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~ 194 (203)
|+.||+++|+.||++|||||||++|+||+|+++|||.|+|++||||+++|.+..+. +||.|+.++++|++.|+++|||.
T Consensus 99 i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~-~LP~p~~~~~~l~~~F~~~Gl~~ 177 (324)
T PLN03030 99 IDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDAS-NLPGFTDSIDVQKQKFAAKGLNT 177 (324)
T ss_pred HHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCccccc-CCcCCCCCHHHHHHHHHHcCCCH
Confidence 99999999999999999999999999999999999999999999999999887774 89999999999999999999999
Q ss_pred cchhhccCC
Q 041339 195 TDMVLLMGI 203 (203)
Q Consensus 195 ~dlVaLsGA 203 (203)
+|||+||||
T Consensus 178 ~DlVaLsGA 186 (324)
T PLN03030 178 QDLVTLVGG 186 (324)
T ss_pred HHheeeeec
Confidence 999999997
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=4.9e-58 Score=406.62 Aligned_cols=163 Identities=58% Similarity=0.962 Sum_probs=157.8
Q ss_pred CCCCCcccCCCCCchHHHHHHHHHHHHHhcCccchhhhHHhhhccccccCCCceeeccCCc---ccccCCCCCCcchhhH
Q 041339 38 ALQVGFYRGKCGIADVEMIVAGVVTARFIRDPTVVAALIRLQFHDCFVNGCDASILIDATN---SEKTAIPNLTIRGYDI 114 (203)
Q Consensus 38 ~l~~~fY~~sC~~P~~e~iVr~~v~~~~~~d~~~a~~lLRL~FHDcfv~GcDgSill~~~~---~E~~~~~N~gL~g~~~ 114 (203)
||+++||++|| |++|+||+++|++.+.+|++++|++|||+||||||+||||||||+++. .|+++++|.||+||++
T Consensus 1 ~L~~~~Y~~sC--P~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~~~N~~l~g~~~ 78 (298)
T cd00693 1 QLSVGFYSKSC--PNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDAPPNLSLRGFDV 78 (298)
T ss_pred CCCcccccCCC--CChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCCCCCchhccCCCCCCcchhHH
Confidence 59999999999 999999999999999999999999999999999999999999999753 7999999999999999
Q ss_pred HHHHHHHHHhhCCCCCcHHHHHHHhhhhhhhhcCCcceeeccCccCCCCCccccccCCCCCCCCCHHHHHHHHHHCCCCc
Q 041339 115 IDEAKAAVEGFCPGVVSCADLIAIAARDAVFLGGGGRYEVQTGRRDGLVSLAQSVSISIPGPSASIPQTMAVFANKGLNL 194 (203)
Q Consensus 115 i~~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~ 194 (203)
|+.||+++|+.||++|||||||++|+|+||+++|||.|+|++||+|+.+|++..+ ++||.|+.+++++++.|+++||++
T Consensus 79 i~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~G~~~ 157 (298)
T cd00693 79 IDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDV-GNLPSPFFSVSQLISLFASKGLTV 157 (298)
T ss_pred HHHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccc-cCCCCcccCHHHHHHHHHHcCCCH
Confidence 9999999999999999999999999999999999999999999999998877766 789999999999999999999999
Q ss_pred cchhhccCC
Q 041339 195 TDMVLLMGI 203 (203)
Q Consensus 195 ~dlVaLsGA 203 (203)
+||||||||
T Consensus 158 ~d~VaL~Ga 166 (298)
T cd00693 158 TDLVALSGA 166 (298)
T ss_pred HHheeeccc
Confidence 999999997
No 3
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=7.7e-50 Score=342.60 Aligned_cols=144 Identities=54% Similarity=0.877 Sum_probs=134.5
Q ss_pred HHHHHHHHHhcCccchhhhHHhhhccccc-cCCCceeeccCCcccccCCCCCCcc-hhhHHHHHHHHHHhhCCCCCcHHH
Q 041339 57 VAGVVTARFIRDPTVVAALIRLQFHDCFV-NGCDASILIDATNSEKTAIPNLTIR-GYDIIDEAKAAVEGFCPGVVSCAD 134 (203)
Q Consensus 57 Vr~~v~~~~~~d~~~a~~lLRL~FHDcfv-~GcDgSill~~~~~E~~~~~N~gL~-g~~~i~~iK~~le~~cp~~VScAD 134 (203)
||+.|++.+.++++++|++|||+|||||+ +|||||||+.. .|+++++|.||+ ++++|+.||+++|++||++|||||
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~GcDgSil~~~--~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~VS~AD 78 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYGGCDGSILLFS--AEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVVSCAD 78 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHTSSSSGGGGST--TGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS-HHH
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccccccccceeccc--cccccccccCcceeeechhhHHhhhcccccCCCCHHH
Confidence 79999999999999999999999999999 99999999944 799999999998 999999999999999999999999
Q ss_pred HHHHhhhhhhhhcCCcceeeccCccCCCCCccccccCCCCCCCCCHHHHHHHHHHCCCCccchhhccCC
Q 041339 135 LIAIAARDAVFLGGGGRYEVQTGRRDGLVSLAQSVSISIPGPSASIPQTMAVFANKGLNLTDMVLLMGI 203 (203)
Q Consensus 135 ilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGA 203 (203)
||++|+|+||+.+|||.|+|++||+|+.++++.++ .+||.|+.++++|++.|+++|||++||||||||
T Consensus 79 iialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~-~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGa 146 (230)
T PF00141_consen 79 IIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGA-SNLPSPTDSVDQLLAFFARKGLSAEEMVALSGA 146 (230)
T ss_dssp HHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHH-HHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGG
T ss_pred HHHHHhhhccccccccccccccccccccccccccc-ccccccccccchhhhhhhccccchhhhcceecc
Confidence 99999999999999999999999999999999877 789999999999999999999999999999996
No 4
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=7.6e-43 Score=307.85 Aligned_cols=136 Identities=24% Similarity=0.287 Sum_probs=125.8
Q ss_pred HHHHHHHHHHhcCccchhhhHHhhhcccc-------ccCCCceeeccCCcccccCCCCCCc-chhhHHHHHHHHHHhhCC
Q 041339 56 IVAGVVTARFIRDPTVVAALIRLQFHDCF-------VNGCDASILIDATNSEKTAIPNLTI-RGYDIIDEAKAAVEGFCP 127 (203)
Q Consensus 56 iVr~~v~~~~~~d~~~a~~lLRL~FHDcf-------v~GcDgSill~~~~~E~~~~~N~gL-~g~~~i~~iK~~le~~cp 127 (203)
-++++++ .+.+|++++|.+|||+||||| ++||||||+++ .|+++++|.|| ++|++|+.||+++
T Consensus 16 ~~~~~~~-~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~---~E~~~~~N~gL~~g~~vid~iK~~~----- 86 (289)
T PLN02608 16 KARRDLR-ALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNE---EEYSHGANNGLKIAIDLCEPVKAKH----- 86 (289)
T ss_pred HHHHHHH-HHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecc---cccCCccccchHHHHHHHHHHHHHc-----
Confidence 4556664 467789999999999999999 89999999996 69999999999 5999999999987
Q ss_pred CCCcHHHHHHHhhhhhhhhcCCcceeeccCccCCCCCccccccCCCCCCCCCHHHHHHHHHHCCCCccchhhccCC
Q 041339 128 GVVSCADLIAIAARDAVFLGGGGRYEVQTGRRDGLVSLAQSVSISIPGPSASIPQTMAVFANKGLNLTDMVLLMGI 203 (203)
Q Consensus 128 ~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGA 203 (203)
++|||||||+||+|+||+++|||.|+|++||+|++++++ +++||+|+.+++++++.|+++|||++|||||+||
T Consensus 87 ~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~---~~~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsGA 159 (289)
T PLN02608 87 PKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPE---EGRLPDAKKGAKHLRDVFYRMGLSDKDIVALSGG 159 (289)
T ss_pred CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCc---cCCCcCCCCCHHHHHHHHHHcCCCHHHHhhhccc
Confidence 589999999999999999999999999999999999864 3689999999999999999999999999999997
No 5
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=8.2e-43 Score=303.17 Aligned_cols=145 Identities=22% Similarity=0.213 Sum_probs=131.2
Q ss_pred chHHHHHHHHHHHHHhcCccchhhhHHhhhccccccCCCceeeccCCc------ccccCCCCCCc-chhhHHHHHHHHHH
Q 041339 51 ADVEMIVAGVVTARFIRDPTVVAALIRLQFHDCFVNGCDASILIDATN------SEKTAIPNLTI-RGYDIIDEAKAAVE 123 (203)
Q Consensus 51 P~~e~iVr~~v~~~~~~d~~~a~~lLRL~FHDcfv~GcDgSill~~~~------~E~~~~~N~gL-~g~~~i~~iK~~le 123 (203)
-+.++||++.|++.+. +++++|++|||+|||||+ ||+|++++... .|+++++|.|| ++|++|+.||+++
T Consensus 10 ~~~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~~--~d~s~~~~G~d~s~~~~~E~~~~~N~~L~~~~~~i~~iK~~~- 85 (253)
T cd00691 10 AKDLEAARNDIAKLID-DKNCAPILVRLAWHDSGT--YDKETKTGGSNGTIRFDPELNHGANAGLDIARKLLEPIKKKY- 85 (253)
T ss_pred HHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhc--cccccCCCCCCccccchhhcCCccccchHHHHHHHHHHHHHc-
Confidence 3467899999999999 999999999999999984 55555543211 59999999999 8999999999886
Q ss_pred hhCCCCCcHHHHHHHhhhhhhhhcCCcceeeccCccCCCCCccccccCCCCCCCCCHHHHHHHHHHCCCCccchhhccCC
Q 041339 124 GFCPGVVSCADLIAIAARDAVFLGGGGRYEVQTGRRDGLVSLAQSVSISIPGPSASIPQTMAVFANKGLNLTDMVLLMGI 203 (203)
Q Consensus 124 ~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGA 203 (203)
++|||||||++|+|+||+.+|||.|+|++||+|+.++....++++||.|+.+++++++.|+++|||++||||||||
T Consensus 86 ----~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsGa 161 (253)
T cd00691 86 ----PDISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSGA 161 (253)
T ss_pred ----CCCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhccc
Confidence 4899999999999999999999999999999999999877777899999999999999999999999999999997
No 6
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=9.6e-42 Score=296.01 Aligned_cols=149 Identities=21% Similarity=0.287 Sum_probs=136.1
Q ss_pred CCcccC--CCCCchHHHHHHHHHHHHHhcCccchhhhHHhhhc-----ccccc--CCCceeeccCCcccccCCCCCCc-c
Q 041339 41 VGFYRG--KCGIADVEMIVAGVVTARFIRDPTVVAALIRLQFH-----DCFVN--GCDASILIDATNSEKTAIPNLTI-R 110 (203)
Q Consensus 41 ~~fY~~--sC~~P~~e~iVr~~v~~~~~~d~~~a~~lLRL~FH-----Dcfv~--GcDgSill~~~~~E~~~~~N~gL-~ 110 (203)
.+||.. -| |++++.+++.+++.+ .+++++|.+|||+|| ||+++ ||||||.++ .|+++++|.|| +
T Consensus 3 ~~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~~---~E~~~~~N~gl~~ 76 (250)
T PLN02364 3 KNYPTVSEDY--KKAVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFD---AEQAHGANSGIHI 76 (250)
T ss_pred CCCCCccHHH--HHHHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCcccccc---ccccCCCccCHHH
Confidence 356654 37 889999999999988 779999999999999 88876 999999765 69999999999 7
Q ss_pred hhhHHHHHHHHHHhhCCCCCcHHHHHHHhhhhhhhhcCCcceeeccCccCCCCCccccccCCCCCCCCCHHHHHHHHHH-
Q 041339 111 GYDIIDEAKAAVEGFCPGVVSCADLIAIAARDAVFLGGGGRYEVQTGRRDGLVSLAQSVSISIPGPSASIPQTMAVFAN- 189 (203)
Q Consensus 111 g~~~i~~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~a~~~LP~p~~~~~~l~~~F~~- 189 (203)
+|++|+.||+++ ++|||||||+||+|+||+++|||.|+|++||+|++++++. ++||.|+.++++|++.|++
T Consensus 77 ~~~~i~~ik~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~---~~lP~p~~~~~~l~~~F~~~ 148 (250)
T PLN02364 77 ALRLLDPIREQF-----PTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPPE---GRLPDATKGCDHLRDVFAKQ 148 (250)
T ss_pred HHHHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCccccccc---CCCCCCCcCHHHHHHHHHHh
Confidence 999999999998 6899999999999999999999999999999999998763 6899999999999999997
Q ss_pred CCCCccchhhccCC
Q 041339 190 KGLNLTDMVLLMGI 203 (203)
Q Consensus 190 ~Gl~~~dlVaLsGA 203 (203)
+|||++||||||||
T Consensus 149 ~Gl~~~d~VaLsGa 162 (250)
T PLN02364 149 MGLSDKDIVALSGA 162 (250)
T ss_pred cCCCHHHheeeecc
Confidence 59999999999997
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=4e-41 Score=301.44 Aligned_cols=142 Identities=25% Similarity=0.364 Sum_probs=131.8
Q ss_pred HHHHHHHHHHHHHhcCc---cchhhhHHhhhccccc------------cCCCceeeccCCcccccCCCCCCcchhhHHHH
Q 041339 53 VEMIVAGVVTARFIRDP---TVVAALIRLQFHDCFV------------NGCDASILIDATNSEKTAIPNLTIRGYDIIDE 117 (203)
Q Consensus 53 ~e~iVr~~v~~~~~~d~---~~a~~lLRL~FHDcfv------------~GcDgSill~~~~~E~~~~~N~gL~g~~~i~~ 117 (203)
+|..|++.+++.+.++. ..|+.+|||+|||||+ +|||||||++.+ .|+++++|.||+ ++|+.
T Consensus 16 ~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~-~E~~~~~N~gL~--~vvd~ 92 (328)
T cd00692 16 VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDD-IETAFHANIGLD--EIVEA 92 (328)
T ss_pred chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCc-ccccCCCCCCHH--HHHHH
Confidence 89999999999998554 5677799999999997 899999999854 699999999998 99999
Q ss_pred HHHHHHhhCCCCCcHHHHHHHhhhhhhh-hcCCcceeeccCccCCCCCccccccCCCCCCCCCHHHHHHHHHHCCCCccc
Q 041339 118 AKAAVEGFCPGVVSCADLIAIAARDAVF-LGGGGRYEVQTGRRDGLVSLAQSVSISIPGPSASIPQTMAVFANKGLNLTD 196 (203)
Q Consensus 118 iK~~le~~cp~~VScADilalAar~av~-~~GGP~~~v~~GR~D~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~d 196 (203)
+|..+|++| |||||||+||+|+||+ +.|||.|+|++||+|++++++. ++||.|+.++++|++.|+++|||.+|
T Consensus 93 lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~~---g~LP~p~~sv~~l~~~F~~~Gf~~~E 166 (328)
T cd00692 93 LRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAPD---GLVPEPFDSVDKILARFADAGFSPDE 166 (328)
T ss_pred HHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCcc---cCCCCCCCCHHHHHHHHHHcCCCHHH
Confidence 999999998 9999999999999999 5699999999999999998754 68999999999999999999999999
Q ss_pred hhhccCC
Q 041339 197 MVLLMGI 203 (203)
Q Consensus 197 lVaLsGA 203 (203)
|||||||
T Consensus 167 ~VaLsGA 173 (328)
T cd00692 167 LVALLAA 173 (328)
T ss_pred Hhhhccc
Confidence 9999997
No 8
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=5.6e-39 Score=278.73 Aligned_cols=138 Identities=22% Similarity=0.255 Sum_probs=126.3
Q ss_pred HHHHHHHHHHHHhcCccchhhhHHhhhccccc-------cCCCceeeccCCcccccCCCCCCcc-hhhHHHHHHHHHHhh
Q 041339 54 EMIVAGVVTARFIRDPTVVAALIRLQFHDCFV-------NGCDASILIDATNSEKTAIPNLTIR-GYDIIDEAKAAVEGF 125 (203)
Q Consensus 54 e~iVr~~v~~~~~~d~~~a~~lLRL~FHDcfv-------~GcDgSill~~~~~E~~~~~N~gL~-g~~~i~~iK~~le~~ 125 (203)
.+-+++.+.+.+ ++...+|.+|||.||||.+ +||||||++. .|+++++|.||+ ++++|+.||+++
T Consensus 17 ~~~~~~~~~~~~-~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~---~E~~~~~N~gL~~~~~~i~~iK~~~--- 89 (251)
T PLN02879 17 VQRCKRKLRGLI-AEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHP---QELAHDANNGLDIAVRLLDPIKELF--- 89 (251)
T ss_pred HHHHHHHHHHHH-hCCCchhHhHHHHHhhhccccCCCCCCCCCeeecCh---hhccCCCcCChHHHHHHHHHHHHHc---
Confidence 344577777766 4579999999999999974 8999999985 699999999998 999999999987
Q ss_pred CCCCCcHHHHHHHhhhhhhhhcCCcceeeccCccCCCCCccccccCCCCCCCCCHHHHHHHHHHCCCCccchhhccCC
Q 041339 126 CPGVVSCADLIAIAARDAVFLGGGGRYEVQTGRRDGLVSLAQSVSISIPGPSASIPQTMAVFANKGLNLTDMVLLMGI 203 (203)
Q Consensus 126 cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsGA 203 (203)
++|||||||+||+|+||+++|||.|+|++||+|+.++++ +++||.|+.++++|++.|+++|||++||||||||
T Consensus 90 --~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~---~~~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsGa 162 (251)
T PLN02879 90 --PILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPP---EGRLPQATKGVDHLRDVFGRMGLNDKDIVALSGG 162 (251)
T ss_pred --CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCc---ccCCCCCCCCHHHHHHHHHHcCCCHHHHeeeecc
Confidence 689999999999999999999999999999999998865 3689999999999999999999999999999997
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=1.5e-38 Score=275.02 Aligned_cols=143 Identities=27% Similarity=0.341 Sum_probs=131.9
Q ss_pred HHHHHHHHHHhcCccchhhhHHhhhcccccc--------CCCceeeccCCcccccCCCCCCc-chhhHHHHHHHHHHhhC
Q 041339 56 IVAGVVTARFIRDPTVVAALIRLQFHDCFVN--------GCDASILIDATNSEKTAIPNLTI-RGYDIIDEAKAAVEGFC 126 (203)
Q Consensus 56 iVr~~v~~~~~~d~~~a~~lLRL~FHDcfv~--------GcDgSill~~~~~E~~~~~N~gL-~g~~~i~~iK~~le~~c 126 (203)
.|++.|++.+.+++++++++|||+|||||+. ||||||+++ .|+++++|.|| +++++|+.||.++|.
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~---~e~~~~~N~~l~~~~~~l~~ik~~~~~-- 76 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFE---PELDRPENGGLDKALRALEPIKSAYDG-- 76 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEecc---ccccCcccccHHHHHHHHHHHHHHcCC--
Confidence 5788999999999999999999999999996 999999998 49999999996 899999999999998
Q ss_pred CCCCcHHHHHHHhhhhhhhhc--CCcceeeccCccCCCCCc--cccccCCCCCCCCCHHHHHHHHHHCCCCccchhhcc-
Q 041339 127 PGVVSCADLIAIAARDAVFLG--GGGRYEVQTGRRDGLVSL--AQSVSISIPGPSASIPQTMAVFANKGLNLTDMVLLM- 201 (203)
Q Consensus 127 p~~VScADilalAar~av~~~--GGP~~~v~~GR~D~~~s~--~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLs- 201 (203)
|++|||||||++|+++||+.+ |||.|++++||+|+..++ ...+.+++|.|+.+++++++.|.++||+++|||||+
T Consensus 77 ~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~~~p~~~~~~~~~~~~F~~~Gl~~~e~VAL~~ 156 (255)
T cd00314 77 GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEGLLPNETSSATELRDKFKRMGLSPSELVALSA 156 (255)
T ss_pred CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCCCCCCccchHHHHHHHHHHcCCCHHHHHhhcc
Confidence 899999999999999999999 999999999999999653 223346788889999999999999999999999999
Q ss_pred CC
Q 041339 202 GI 203 (203)
Q Consensus 202 GA 203 (203)
||
T Consensus 157 Ga 158 (255)
T cd00314 157 GA 158 (255)
T ss_pred CC
Confidence 76
No 10
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=2.3e-38 Score=275.67 Aligned_cols=130 Identities=25% Similarity=0.293 Sum_probs=113.2
Q ss_pred HHHHHHHhcCccchhhhHHhhhcccc-------ccCCCceeeccCCccccc-CCCCCCcchhhHHHHHHHHHHhhCCCCC
Q 041339 59 GVVTARFIRDPTVVAALIRLQFHDCF-------VNGCDASILIDATNSEKT-AIPNLTIRGYDIIDEAKAAVEGFCPGVV 130 (203)
Q Consensus 59 ~~v~~~~~~d~~~a~~lLRL~FHDcf-------v~GcDgSill~~~~~E~~-~~~N~gL~g~~~i~~iK~~le~~cp~~V 130 (203)
..-......++++++++|||+||||| ++||||||+++....|+. ...|.+|++|+.|+.+ +|
T Consensus 29 ~c~~~~~~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~~~En~G~~~n~~l~~~~~i~~~----------~V 98 (264)
T cd08201 29 PCTDCAPGPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYELDRPENIGSGFNTTLNFFVNFYSP----------RS 98 (264)
T ss_pred cccccCcCCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecCCChhhccCchhhccccceeeccC----------cc
Confidence 33344455789999999999999999 899999999985546776 4455677888876543 59
Q ss_pred cHHHHHHHhhhhhhhhcCCcceeeccCccCCCCCccccccCCCCCCCCCHHHHHHHHHHCCCCccchhhccC
Q 041339 131 SCADLIAIAARDAVFLGGGGRYEVQTGRRDGLVSLAQSVSISIPGPSASIPQTMAVFANKGLNLTDMVLLMG 202 (203)
Q Consensus 131 ScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLsG 202 (203)
|||||||||+|+||+.+|||.|+|++||+|++++++. .||.|+.++++|++.|+++||+++|||+|||
T Consensus 99 ScADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~~~----glP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsg 166 (264)
T cd08201 99 SMADLIAMGVVTSVASCGGPVVPFRAGRIDATEAGQA----GVPEPQTDLGTTTESFRRQGFSTSEMIALVA 166 (264)
T ss_pred CHHHHHHHHHHHHHHHcCCCeecccccCCCccccccc----cCCCCccCHHHHHHHHHHcCCChHHHheeec
Confidence 9999999999999999999999999999999988775 4999999999999999999999999999996
No 11
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=99.93 E-value=5e-26 Score=208.17 Aligned_cols=157 Identities=18% Similarity=0.172 Sum_probs=132.0
Q ss_pred CCCCCCc-ccCCCCCchH-HHHHHHHHHHHHhcC--------ccchhhhHHhhhccccc-------cCCC-ceeeccCCc
Q 041339 37 GALQVGF-YRGKCGIADV-EMIVAGVVTARFIRD--------PTVVAALIRLQFHDCFV-------NGCD-ASILIDATN 98 (203)
Q Consensus 37 ~~l~~~f-Y~~sC~~P~~-e~iVr~~v~~~~~~d--------~~~a~~lLRL~FHDcfv-------~GcD-gSill~~~~ 98 (203)
..+..+| |.+.+ -+. .+.|++.|++.+... ...+|-+|||+|||+.+ +|++ |+|.+.
T Consensus 27 ~p~~~~~~~~~~~--~~~d~~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~--- 101 (409)
T cd00649 27 NPMGEDFNYAEEF--KKLDLEALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFA--- 101 (409)
T ss_pred CCCCCCCCHHHHh--hhccHHHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCccccc---
Confidence 3455666 55555 332 268889999988764 37999999999999986 7996 899998
Q ss_pred ccccCCCCCCcc-hhhHHHHHHHHHHhhCCCCCcHHHHHHHhhhhhhhhcCCcceeeccCccCCCCCcc-----------
Q 041339 99 SEKTAIPNLTIR-GYDIIDEAKAAVEGFCPGVVSCADLIAIAARDAVFLGGGGRYEVQTGRRDGLVSLA----------- 166 (203)
Q Consensus 99 ~E~~~~~N~gL~-g~~~i~~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~----------- 166 (203)
.|++.+.|.||. +..+++.||+++ |..||+||+|+||+..||+.+|||.|++..||.|...+..
T Consensus 102 pe~~~~~N~gL~~a~~~L~pik~k~----~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~ 177 (409)
T cd00649 102 PLNSWPDNVNLDKARRLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWL 177 (409)
T ss_pred cccCcHhhhhHHHHHHHHHHHHHHc----CCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcc
Confidence 699999999995 788999999876 4579999999999999999999999999999999965432
Q ss_pred ---------------------------ccccCCCCCCCCCHHHHHHHHHHCCCCccchhhc-cCC
Q 041339 167 ---------------------------QSVSISIPGPSASIPQTMAVFANKGLNLTDMVLL-MGI 203 (203)
Q Consensus 167 ---------------------------~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaL-sGA 203 (203)
++. ..||.|..++++|++.|.+||||.+||||| +||
T Consensus 178 ~~~~~~~~~~l~~pl~a~~mgliyv~Pegp-~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGA 241 (409)
T cd00649 178 ADKRYSGDRDLENPLAAVQMGLIYVNPEGP-DGNPDPLAAAKDIRETFARMAMNDEETVALIAGG 241 (409)
T ss_pred cccccccchhhccchhhhhccccccCCCCC-CCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCC
Confidence 111 269999999999999999999999999999 596
No 12
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=99.92 E-value=9.5e-26 Score=217.74 Aligned_cols=158 Identities=18% Similarity=0.174 Sum_probs=131.1
Q ss_pred cCCCCCCc-ccCCCCCchH-HHHHHHHHHHHHhcC--------ccchhhhHHhhhccccc-------cCC-CceeeccCC
Q 041339 36 HGALQVGF-YRGKCGIADV-EMIVAGVVTARFIRD--------PTVVAALIRLQFHDCFV-------NGC-DASILIDAT 97 (203)
Q Consensus 36 ~~~l~~~f-Y~~sC~~P~~-e~iVr~~v~~~~~~d--------~~~a~~lLRL~FHDcfv-------~Gc-DgSill~~~ 97 (203)
...+..+| |.+.+ -+. .+.|++.+++.+... ...+|-+|||+||++.+ +|| .|+|.+.
T Consensus 36 ~~p~~~~f~y~~~~--~~ld~~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~-- 111 (716)
T TIGR00198 36 TNPMGEDFDYAEEF--QQLDLAAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFA-- 111 (716)
T ss_pred CCCCCCCccHHHHh--hhccHHHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceecc--
Confidence 34566667 77666 221 246889999988764 36999999999999987 788 5999998
Q ss_pred cccccCCCCCCcc-hhhHHHHHHHHHHhhCCCCCcHHHHHHHhhhhhhhhcCCcceeeccCccCCCCCc-----------
Q 041339 98 NSEKTAIPNLTIR-GYDIIDEAKAAVEGFCPGVVSCADLIAIAARDAVFLGGGGRYEVQTGRRDGLVSL----------- 165 (203)
Q Consensus 98 ~~E~~~~~N~gL~-g~~~i~~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~----------- 165 (203)
.|++.+.|.+|. .+.+++.||+ +||++|||||||+||+++||+.+|||.|++.+||+|+..+.
T Consensus 112 -P~~sw~~N~~Ldka~~lL~pIk~----kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~ 186 (716)
T TIGR00198 112 -PLNSWPDNVNLDKARRLLWPIKK----KYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEW 186 (716)
T ss_pred -cccCchhhhhHHHHHHHHHHHHH----HCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccch
Confidence 589999999984 7788888775 58999999999999999999999999999999999994321
Q ss_pred --------------------------cccccCCCCCCCCCHHHHHHHHHHCCCCccchhhcc-CC
Q 041339 166 --------------------------AQSVSISIPGPSASIPQTMAVFANKGLNLTDMVLLM-GI 203 (203)
Q Consensus 166 --------------------------~~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-GA 203 (203)
++.+ ..+|.|..++++|++.|.++|||.+|||||+ ||
T Consensus 187 l~~~~~~~~~l~~p~a~~~~Gliyvnpeg~-~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGa 250 (716)
T TIGR00198 187 LTSSREDRESLENPLAATEMGLIYVNPEGP-DGHPDPLCTAQDIRTTFARMGMNDEETVALIAGG 250 (716)
T ss_pred hhccccccccccccchhhhccccccCcccc-cCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCc
Confidence 1222 2699999999999999999999999999996 75
No 13
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.88 E-value=6.9e-23 Score=197.42 Aligned_cols=158 Identities=18% Similarity=0.180 Sum_probs=131.9
Q ss_pred cCCCCCCc-ccCCCCCchH-HHHHHHHHHHHHhcC--------ccchhhhHHhhhccccc-------cCCC-ceeeccCC
Q 041339 36 HGALQVGF-YRGKCGIADV-EMIVAGVVTARFIRD--------PTVVAALIRLQFHDCFV-------NGCD-ASILIDAT 97 (203)
Q Consensus 36 ~~~l~~~f-Y~~sC~~P~~-e~iVr~~v~~~~~~d--------~~~a~~lLRL~FHDcfv-------~GcD-gSill~~~ 97 (203)
+..+..+| |.+-+ -+. .+.|++.+++.+... ...+|-+|||+||++.+ +||+ |+|.+.
T Consensus 38 ~~p~~~~f~y~~~~--~~ld~~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~-- 113 (726)
T PRK15061 38 SNPMGEDFDYAEEF--KKLDLEALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFA-- 113 (726)
T ss_pred CCCCCCCCCHHHHh--chhhHHHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCc--
Confidence 34566677 77666 222 357889999888764 37999999999999996 7986 899998
Q ss_pred cccccCCCCCCcc-hhhHHHHHHHHHHhhCCCCCcHHHHHHHhhhhhhhhcCCcceeeccCccCCCCCcc----------
Q 041339 98 NSEKTAIPNLTIR-GYDIIDEAKAAVEGFCPGVVSCADLIAIAARDAVFLGGGGRYEVQTGRRDGLVSLA---------- 166 (203)
Q Consensus 98 ~~E~~~~~N~gL~-g~~~i~~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~---------- 166 (203)
.|.+.+.|.||. +..+++.||+++ |..||+||+|+||+..||+.+|||.|++..||.|...+..
T Consensus 114 -pe~~w~~N~gL~ka~~~L~pik~ky----~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~ 188 (726)
T PRK15061 114 -PLNSWPDNVNLDKARRLLWPIKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEW 188 (726)
T ss_pred -ccccchhhhhHHHHHHHHHHHHHHh----CCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccc
Confidence 689999999995 789999999887 4579999999999999999999999999999999865332
Q ss_pred -----------------------------ccccCCCCCCCCCHHHHHHHHHHCCCCccchhhcc-CC
Q 041339 167 -----------------------------QSVSISIPGPSASIPQTMAVFANKGLNLTDMVLLM-GI 203 (203)
Q Consensus 167 -----------------------------~~a~~~LP~p~~~~~~l~~~F~~~Gl~~~dlVaLs-GA 203 (203)
++. ..+|+|..++.+|++.|.+||||.+|||||+ ||
T Consensus 189 l~~~~r~~~~~~l~~pl~a~~mgliyvnpegp-~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGg 254 (726)
T PRK15061 189 LGGDERYSGERDLENPLAAVQMGLIYVNPEGP-NGNPDPLAAARDIRETFARMAMNDEETVALIAGG 254 (726)
T ss_pred cccccccccccccccchhhhhccceecCCCCC-CCCCCcccCHHHHHHHHHHcCCCHHHheeeccCC
Confidence 111 1389999999999999999999999999995 86
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=99.86 E-value=9.8e-22 Score=173.73 Aligned_cols=142 Identities=16% Similarity=0.178 Sum_probs=116.6
Q ss_pred HHHHHHHhcCccchhhhHHhhhccccc-------cCCCce-eeccCCcccccCCCCCC--cc-hhhHHHHHHHHHHh-hC
Q 041339 59 GVVTARFIRDPTVVAALIRLQFHDCFV-------NGCDAS-ILIDATNSEKTAIPNLT--IR-GYDIIDEAKAAVEG-FC 126 (203)
Q Consensus 59 ~~v~~~~~~d~~~a~~lLRL~FHDcfv-------~GcDgS-ill~~~~~E~~~~~N~g--L~-g~~~i~~iK~~le~-~c 126 (203)
+.+++.+....-.++.++||+||++.+ +|++|+ |.|. .|++.+.|.+ |. .+.+++.||+++.. .-
T Consensus 17 ~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~---pe~~w~~N~~~~L~~~~~~Le~ik~~~~~~~~ 93 (297)
T cd08200 17 AALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLA---PQKDWEVNEPEELAKVLAVLEGIQKEFNESQS 93 (297)
T ss_pred HHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCc---cccCcCccCcHHHHHHHHHHHHHHHHhccccc
Confidence 677788888888999999999999986 899999 8888 6999999998 84 78899999988732 11
Q ss_pred C-CCCcHHHHHHHhhhhhhhhcCC-----cceeeccCccCCCCCcccc--ccCCCCCCC------------CCHHHHHHH
Q 041339 127 P-GVVSCADLIAIAARDAVFLGGG-----GRYEVQTGRRDGLVSLAQS--VSISIPGPS------------ASIPQTMAV 186 (203)
Q Consensus 127 p-~~VScADilalAar~av~~~GG-----P~~~v~~GR~D~~~s~~~~--a~~~LP~p~------------~~~~~l~~~ 186 (203)
+ ..||+||+|+||+..||+.+|| |.+++.+||.|...+.... -...+|.+. ...+.|+..
T Consensus 94 ~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~Lrd~ 173 (297)
T cd08200 94 GGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEMLVDK 173 (297)
T ss_pred CCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHHHHHH
Confidence 2 2799999999999999999999 9999999999997653211 011344332 244789999
Q ss_pred HHHCCCCccchhhccCC
Q 041339 187 FANKGLNLTDMVLLMGI 203 (203)
Q Consensus 187 F~~~Gl~~~dlVaLsGA 203 (203)
|.++|||.+|||||+||
T Consensus 174 f~rlglsd~EmvaL~Gg 190 (297)
T cd08200 174 AQLLTLTAPEMTVLVGG 190 (297)
T ss_pred HHhCCCChHHHhheecc
Confidence 99999999999999996
No 15
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=99.76 E-value=2.9e-18 Score=165.64 Aligned_cols=141 Identities=18% Similarity=0.212 Sum_probs=116.7
Q ss_pred HHHHHHHhcCccchhhhHHhhhccccc-------cCCCce-eeccCCcccccCCCCC--Ccc-hhhHHHHHHHHHHhhC-
Q 041339 59 GVVTARFIRDPTVVAALIRLQFHDCFV-------NGCDAS-ILIDATNSEKTAIPNL--TIR-GYDIIDEAKAAVEGFC- 126 (203)
Q Consensus 59 ~~v~~~~~~d~~~a~~lLRL~FHDcfv-------~GcDgS-ill~~~~~E~~~~~N~--gL~-g~~~i~~iK~~le~~c- 126 (203)
..++..+....-..+.++|++||++.+ +|++|+ |.|. .|++.+.|. +|. .+.+++.||+++...-
T Consensus 442 ~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~---Pq~~w~~N~p~~L~~vl~~LE~Ik~~f~~~~~ 518 (726)
T PRK15061 442 AALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLA---PQKDWEVNEPAQLAKVLAVLEGIQAEFNAAQS 518 (726)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceecc---cccCccccCHHHHHHHHHHHHHHHHHHhhccC
Confidence 667777777778899999999999986 899999 9998 699999999 885 7899999999985432
Q ss_pred -CCCCcHHHHHHHhhhhhhhhc---CC--cceeeccCccCCCCCcccccc---CCCCCCC------------CCHHHHHH
Q 041339 127 -PGVVSCADLIAIAARDAVFLG---GG--GRYEVQTGRRDGLVSLAQSVS---ISIPGPS------------ASIPQTMA 185 (203)
Q Consensus 127 -p~~VScADilalAar~av~~~---GG--P~~~v~~GR~D~~~s~~~~a~---~~LP~p~------------~~~~~l~~ 185 (203)
...||+||+|+||+..||+.+ || |.+++..||.|.+.... ++. ..+|... ...+.|++
T Consensus 519 ~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~t-d~esf~~l~P~Adgfrny~~~~~~~~~e~~L~d 597 (726)
T PRK15061 519 GGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQT-DVESFAVLEPKADGFRNYLKKGYSVSPEELLVD 597 (726)
T ss_pred CCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCC-CcccccccCCCCccccccccccCCCCHHHHHHH
Confidence 236999999999999999988 58 99999999999976432 221 2456532 23478999
Q ss_pred HHHHCCCCccchhhccCC
Q 041339 186 VFANKGLNLTDMVLLMGI 203 (203)
Q Consensus 186 ~F~~~Gl~~~dlVaLsGA 203 (203)
.|..+|||.+|||||+|+
T Consensus 598 ~a~~lglt~~EmvaL~Gg 615 (726)
T PRK15061 598 KAQLLTLTAPEMTVLVGG 615 (726)
T ss_pred HHHhCCCChHHHhheecc
Confidence 999999999999999996
No 16
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=99.75 E-value=2.9e-18 Score=166.10 Aligned_cols=140 Identities=19% Similarity=0.237 Sum_probs=110.6
Q ss_pred HHHHHHH---HHhcCccchhhhHHhhhccccc-------cCCCce-eeccCCcccccCCCC--CCcc-hhhHHHHHHHHH
Q 041339 57 VAGVVTA---RFIRDPTVVAALIRLQFHDCFV-------NGCDAS-ILIDATNSEKTAIPN--LTIR-GYDIIDEAKAAV 122 (203)
Q Consensus 57 Vr~~v~~---~~~~d~~~a~~lLRL~FHDcfv-------~GcDgS-ill~~~~~E~~~~~N--~gL~-g~~~i~~iK~~l 122 (203)
|++.|.. .+....-.++.++||+||++.+ +|++|+ |.|. .|++.+.| .||. .+.+++.||+++
T Consensus 430 v~~di~~lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~---pe~~w~~N~p~gL~~vl~~Le~Ik~~f 506 (716)
T TIGR00198 430 SEGDIKELKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLE---PQKNWPVNEPTRLAKVLAVLEKIQAEF 506 (716)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecc---hhcCcccCCHHHHHHHHHHHHHHHHHc
Confidence 3555544 3555667889999999999986 899998 8888 69999999 6884 789999999887
Q ss_pred HhhCCCCCcHHHHHHHhhhhhhhhc---CCc--ceeeccCccCCCCCccccccCCCC-----C----------CCCCHHH
Q 041339 123 EGFCPGVVSCADLIAIAARDAVFLG---GGG--RYEVQTGRRDGLVSLAQSVSISIP-----G----------PSASIPQ 182 (203)
Q Consensus 123 e~~cp~~VScADilalAar~av~~~---GGP--~~~v~~GR~D~~~s~~~~a~~~LP-----~----------p~~~~~~ 182 (203)
.. ..||+||+|+||+..||+.+ ||| .+++.+||.|.+.... ++.+..| + .......
T Consensus 507 ~~---~~vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~t-d~~~~~~l~p~adgfRn~~~~~~~~~~~~~ 582 (716)
T TIGR00198 507 AK---GPVSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMT-DAESFTPLEPIADGFRNYLKRDYAVTPEEL 582 (716)
T ss_pred CC---CcccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCC-CccccccCCCCCcccchhccccccCCHHHH
Confidence 31 27999999999999999998 898 5788999999976532 2222222 1 1234567
Q ss_pred HHHHHHHCCCCccchhhccCC
Q 041339 183 TMAVFANKGLNLTDMVLLMGI 203 (203)
Q Consensus 183 l~~~F~~~Gl~~~dlVaLsGA 203 (203)
|++.|..+|||.+|||||+|+
T Consensus 583 l~d~a~~lglt~~EmvaL~Gg 603 (716)
T TIGR00198 583 LLDKAQLLTLTAPEMTVLIGG 603 (716)
T ss_pred HHHHHHhCCCChHHHHheecc
Confidence 899999999999999999996
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.41 E-value=3.2e-13 Score=126.96 Aligned_cols=125 Identities=19% Similarity=0.163 Sum_probs=108.1
Q ss_pred cchhhhHHhhhccccc--------cCCCceeeccCCcccccCCCCCCcc-hhhHHHHHHHHHHhhCCCCCcHHHHHHHhh
Q 041339 70 TVVAALIRLQFHDCFV--------NGCDASILIDATNSEKTAIPNLTIR-GYDIIDEAKAAVEGFCPGVVSCADLIAIAA 140 (203)
Q Consensus 70 ~~a~~lLRL~FHDcfv--------~GcDgSill~~~~~E~~~~~N~gL~-g~~~i~~iK~~le~~cp~~VScADilalAa 140 (203)
...|-+|||+||-+.+ ++-.|...+. .+.+.|.|.+|+ ++.++..||+++ +..+|.||++.|++
T Consensus 93 hYGplfIRmAWHsAGTYRi~DGRGGa~~G~qRFa---PlnSWPDN~nLDKarRLLWPIKkKY----G~kiSWaDL~iLaG 165 (730)
T COG0376 93 HYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFA---PLNSWPDNANLDKARRLLWPIKKKY----GRKISWADLIILAG 165 (730)
T ss_pred ccccceeeeeecccCceecccCCCCCCCCceecc---cccCCCcccchHHHHHHhhhHhHhh----cccccHhHhhhhhc
Confidence 4889999999999986 3356677765 466788899995 899999999887 56999999999999
Q ss_pred hhhhhhcCCcceeeccCccCCCCCcc--------------------------------------ccccCCCCCCCCCHHH
Q 041339 141 RDAVFLGGGGRYEVQTGRRDGLVSLA--------------------------------------QSVSISIPGPSASIPQ 182 (203)
Q Consensus 141 r~av~~~GGP~~~v~~GR~D~~~s~~--------------------------------------~~a~~~LP~p~~~~~~ 182 (203)
..|++.+|++.+.+..||.|--.+.. ++. +..|+|..+..+
T Consensus 166 nvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~PlaavqMGLIYVNPEGp-ng~PDpl~aA~d 244 (730)
T COG0376 166 NVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQMGLIYVNPEGP-NGNPDPLAAARD 244 (730)
T ss_pred hhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhheeeeEEeCCCCC-CCCCChhhhHHH
Confidence 99999999999999999999766554 333 358999999999
Q ss_pred HHHHHHHCCCCccchhhccC
Q 041339 183 TMAVFANKGLNLTDMVLLMG 202 (203)
Q Consensus 183 l~~~F~~~Gl~~~dlVaLsG 202 (203)
++..|+++++|.+|.|||++
T Consensus 245 IRetFaRMaMNDeETVALia 264 (730)
T COG0376 245 IRETFARMAMNDEETVALIA 264 (730)
T ss_pred HHHHHHHhcCCcHhhhhhhh
Confidence 99999999999999999985
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=96.25 E-value=0.014 Score=56.23 Aligned_cols=137 Identities=18% Similarity=0.214 Sum_probs=93.2
Q ss_pred HHHHHHHhcCccchhhhHHhhhccccc-------cCCCce-eeccCCcccccCCCCC--Cc-chhhHHHHHHHHHHhhCC
Q 041339 59 GVVTARFIRDPTVVAALIRLQFHDCFV-------NGCDAS-ILIDATNSEKTAIPNL--TI-RGYDIIDEAKAAVEGFCP 127 (203)
Q Consensus 59 ~~v~~~~~~d~~~a~~lLRL~FHDcfv-------~GcDgS-ill~~~~~E~~~~~N~--gL-~g~~~i~~iK~~le~~cp 127 (203)
..++..+...--....++-.+|-.+-+ +|.+|. |.|. ..++.+.|. -| +-+.+++.|.+.+.
T Consensus 452 ~~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLa---PqkdWevN~P~~l~kvl~~le~iq~~fn---- 524 (730)
T COG0376 452 AALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLA---PQKDWEVNQPAELAKVLAVLEKIQKEFN---- 524 (730)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeec---ccccCCCCCHHHHHHHHHHHHHHHHHhc----
Confidence 456667777667778888888887765 566654 5566 467777775 34 35778888887774
Q ss_pred CCCcHHHHHHHhhhhhhhh---cCCcc--eeeccCccCCCCCccccccCC--C-C------------CCCCCHHHHHHHH
Q 041339 128 GVVSCADLIAIAARDAVFL---GGGGR--YEVQTGRRDGLVSLAQSVSIS--I-P------------GPSASIPQTMAVF 187 (203)
Q Consensus 128 ~~VScADilalAar~av~~---~GGP~--~~v~~GR~D~~~s~~~~a~~~--L-P------------~p~~~~~~l~~~F 187 (203)
..||.||+|+|++..+|+. ..|-. +|+..||.|.+..-. ++... | | .....-.-|+++=
T Consensus 525 kkvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqt-Dv~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvDkA 603 (730)
T COG0376 525 KKVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQT-DVESFAVLEPIADGFRNYVKKDYVLTPEELLVDKA 603 (730)
T ss_pred CccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhc-chhhhhcccccchhhhhhccCCCcCCHHHHHHHHH
Confidence 4699999999999999985 35655 456789999865322 11110 1 1 1112233466676
Q ss_pred HHCCCCccchhhccCC
Q 041339 188 ANKGLNLTDMVLLMGI 203 (203)
Q Consensus 188 ~~~Gl~~~dlVaLsGA 203 (203)
+-.+|+.-||++|.|.
T Consensus 604 qlL~LtapemtVLiGG 619 (730)
T COG0376 604 QLLTLTAPEMTVLIGG 619 (730)
T ss_pred HHhccCCccceEEEcc
Confidence 7789999999999884
No 19
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=67.32 E-value=15 Score=29.30 Aligned_cols=59 Identities=8% Similarity=0.234 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhhhcc-----------cCCCCCCcccCCCCCchHHHHHHHHHHHHHhcCccchhhhHHhhhc
Q 041339 20 LLILRQCLLANIAGLS-----------HGALQVGFYRGKCGIADVEMIVAGVVTARFIRDPTVVAALIRLQFH 81 (203)
Q Consensus 20 ~~~~~~~~~~~~~~~~-----------~~~l~~~fY~~sC~~P~~e~iVr~~v~~~~~~d~~~a~~lLRL~FH 81 (203)
.+.++.|+++.+..+. +..-+++|-.+.- .-|.-|++.+...+.....+.|.-||+++-
T Consensus 4 ~~li~tc~lL~~f~aqga~feep~as~aqpgs~~~~~~~v---hDeeHIkeHLegki~~~a~mtpeqlqfHYF 73 (144)
T KOG4065|consen 4 FLLISTCFLLLVFEAQGAKFEEPAASFAQPGSMGLDKKEV---HDEEHIKEHLEGKIEKVAKMTPEQLQFHYF 73 (144)
T ss_pred hhHHHHHHHHHHHhcChhhhcCchhhhcCCcccccccccc---ccHHHHHHHHhcccchhhhCCHHHHhhhhh
Confidence 4566779888643322 2234667777665 345667788888888778899999888873
No 20
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.43 E-value=1.4e+02 Score=21.56 Aligned_cols=28 Identities=14% Similarity=0.337 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhcCccchhhhHHhhhccc
Q 041339 56 IVAGVVTARFIRDPTVVAALIRLQFHDC 83 (203)
Q Consensus 56 iVr~~v~~~~~~d~~~a~~lLRL~FHDc 83 (203)
|.|+.+.+.+++||.+-...||+-+--.
T Consensus 24 iark~~~k~lk~NPpine~~iR~M~~qm 51 (71)
T COG3763 24 IARKQMKKQLKDNPPINEEMIRMMMAQM 51 (71)
T ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHh
Confidence 8899999999999999999999987654
No 21
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=36.76 E-value=24 Score=28.52 Aligned_cols=45 Identities=20% Similarity=0.247 Sum_probs=26.7
Q ss_pred HHHHHHHHHHH-hhhccc---CCCCCCcccCCCCCchHHHHHHHHHHHHHhcCccchhhhHHhhhccc
Q 041339 20 LLILRQCLLAN-IAGLSH---GALQVGFYRGKCGIADVEMIVAGVVTARFIRDPTVVAALIRLQFHDC 83 (203)
Q Consensus 20 ~~~~~~~~~~~-~~~~~~---~~l~~~fY~~sC~~P~~e~iVr~~v~~~~~~d~~~a~~lLRL~FHDc 83 (203)
+.+-..|+..+ +.+++. .....++|-++| -+ .--|.=-|-+|||=
T Consensus 111 msv~SvClSIlSMLSSs~eKqrP~Dn~~Yvk~C--~~-----------------grsPk~TrWwfHDD 159 (161)
T KOG0427|consen 111 MSVQSVCLSILSMLSSSKEKQRPTDNDRYVKNC--KN-----------------GRSPKETRWWFHDD 159 (161)
T ss_pred hhhHHHHHHHHHHHccCccccCCCccchhhhhc--cC-----------------CCCcccceeeeccC
Confidence 34444566654 222222 346778999999 22 23455568999983
No 22
>PF08782 c-SKI_SMAD_bind: c-SKI Smad4 binding domain; InterPro: IPR014890 c-SKI is an oncoprotein that inhibits TGF-beta signalling through interaction with Smad proteins []. This protein binds to Smad4 [].; GO: 0005634 nucleus; PDB: 1MR1_C.
Probab=33.58 E-value=12 Score=28.35 Aligned_cols=15 Identities=40% Similarity=1.174 Sum_probs=10.0
Q ss_pred hhccccccCCCceeec
Q 041339 79 QFHDCFVNGCDASILI 94 (203)
Q Consensus 79 ~FHDcfv~GcDgSill 94 (203)
.+|+|| +||.|++..
T Consensus 4 V~HeC~-g~c~G~f~P 18 (96)
T PF08782_consen 4 VYHECF-GGCRGSFIP 18 (96)
T ss_dssp EEE-ST-T-EEEEE-G
T ss_pred eEEeec-CccceEech
Confidence 479998 899999984
No 23
>PF08252 Leader_CPA1: arg-2/CPA1 leader peptide ; InterPro: IPR013203 In this family there are leaders peptides involved in the regulation of the glutaminase subunit (small subunit) of arginine-specific carbamoyl phosphate synthetase. In Neurospora crassa it is a small upstream ORF of 24 codons above the arg-2 locus []. In yeast it is the leader peptide of the CPA1 gene. The 5' region of CPA1 mRNA contains a 25 codon upstream open reading frame. The leader peptide, the product of the upstream open reading frame, plays an essential, negative role in the specific repression of CPA1 by arginine [].; PDB: 2XL1_A.
Probab=30.92 E-value=7.6 Score=22.06 Aligned_cols=8 Identities=63% Similarity=1.323 Sum_probs=6.4
Q ss_pred ccccccch
Q 041339 5 VDHIWKTK 12 (203)
Q Consensus 5 ~~~~~~~~ 12 (203)
+|||||..
T Consensus 15 SDhiWk~~ 22 (24)
T PF08252_consen 15 SDHIWKAS 22 (24)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 69999864
No 24
>PF04225 OapA: Opacity-associated protein A LysM-like domain; InterPro: IPR007340 This entry includes the Haemophilus influenzae opacity-associated protein. This protein is required for efficient nasopharyngeal mucosal colonization, and its expression is associated with a distinctive transparent colony phenotype. OapA is thought to be a secreted protein, and its expression exhibits high-frequency phase variation [].; PDB: 2GU1_A.
Probab=29.30 E-value=28 Score=25.42 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=15.1
Q ss_pred HHHHHHHHHCCCCccchhhcc
Q 041339 181 PQTMAVFANKGLNLTDMVLLM 201 (203)
Q Consensus 181 ~~l~~~F~~~Gl~~~dlVaLs 201 (203)
+.|-..|.+.||+.+||-.|+
T Consensus 11 DtLs~iF~~~gls~~dl~~v~ 31 (85)
T PF04225_consen 11 DTLSTIFRRAGLSASDLYAVL 31 (85)
T ss_dssp --HHHHHHHTT--HHHHHHHH
T ss_pred CcHHHHHHHcCCCHHHHHHHH
Confidence 568899999999999998775
No 25
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=29.20 E-value=2.3e+02 Score=25.53 Aligned_cols=95 Identities=19% Similarity=0.217 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhcCccchhhhHHhhhccccccCCCceeeccCCcccccCCCCCCcchhhHHHHHHHHHHhhCCCCCcHHH
Q 041339 55 MIVAGVVTARFIRDPTVVAALIRLQFHDCFVNGCDASILIDATNSEKTAIPNLTIRGYDIIDEAKAAVEGFCPGVVSCAD 134 (203)
Q Consensus 55 ~iVr~~v~~~~~~d~~~a~~lLRL~FHDcfv~GcDgSill~~~~~E~~~~~N~gL~g~~~i~~iK~~le~~cp~~VScAD 134 (203)
+-+++.|++..++ .|+|--|++...+.|...+...++ .+.++.+.+.++..-+. ++.+-
T Consensus 132 e~~~~DI~~f~~~------------------~~~d~vVvvn~asTE~~~~~~~~~--~~t~~~l~~al~~~~~~-~~aS~ 190 (295)
T PF07994_consen 132 EQIREDIRDFKKE------------------NGLDRVVVVNVASTERYIPVIPGV--HDTLEALEKALDENDPE-ISASM 190 (295)
T ss_dssp HHHHHHHHHHHHH------------------TT-SCEEEEE-SSCC-S---CCCC--CSSHHHHHHHHHTT-TT-HHHHH
T ss_pred HHHHHHHHHHHHH------------------hCCCcEEEEECCCCCCCCCCCccc--cCCHHHHHHHhhcCCCc-CChHH
Confidence 3456777776655 589988888765555533222222 23455666677765555 89999
Q ss_pred HHHHhhhhhhhhcCCcceeeccCccCCCCCccccccCCCCCCCCCHHHHHHHHHHCCC
Q 041339 135 LIAIAARDAVFLGGGGRYEVQTGRRDGLVSLAQSVSISIPGPSASIPQTMAVFANKGL 192 (203)
Q Consensus 135 ilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~a~~~LP~p~~~~~~l~~~F~~~Gl 192 (203)
++|.|+-. .|-|++. ..|++..+...+.+.|+++|+
T Consensus 191 ~YA~AAl~----~g~~fvN------------------~tP~~~a~~P~l~ela~~~gv 226 (295)
T PF07994_consen 191 LYAYAALE----AGVPFVN------------------GTPSNIADDPALVELAEEKGV 226 (295)
T ss_dssp HHHHHHHH----TTEEEEE-------------------SSSTTTTSHHHHHHHHHHTE
T ss_pred HHHHHHHH----CCCCeEe------------------ccCccccCCHHHHHHHHHcCC
Confidence 99998864 3444332 367778888899999999885
No 26
>PF14919 MTBP_mid: MDM2-binding
Probab=28.51 E-value=65 Score=29.69 Aligned_cols=60 Identities=17% Similarity=0.266 Sum_probs=42.3
Q ss_pred cchhhHHHHHHHHHHhhCCCCCcHHHHHHHhhhhhhhhcCCcceeeccCccCCCCCccccccCCCCCCCCCHHHHHHHHH
Q 041339 109 IRGYDIIDEAKAAVEGFCPGVVSCADLIAIAARDAVFLGGGGRYEVQTGRRDGLVSLAQSVSISIPGPSASIPQTMAVFA 188 (203)
Q Consensus 109 L~g~~~i~~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~GR~D~~~s~~~~a~~~LP~p~~~~~~l~~~F~ 188 (203)
|+.++.++++|......- +| -+-.-.+|++|+...+.. -.++.+|+.+|.
T Consensus 272 LQNlEn~ek~kQK~R~~~---l~------------------~SseqLLG~Kdg~r~s~t---------LLDAkELLK~FT 321 (342)
T PF14919_consen 272 LQNLENFEKAKQKMRTGS---LP------------------RSSEQLLGHKDGQRDSVT---------LLDAKELLKYFT 321 (342)
T ss_pred HHHHHHHHHHHHHHhccc---CC------------------CCHHHhcCCCCCCCCCcc---------cccHHHHHhhcC
Confidence 557888899988774311 00 012456899999765543 457899999999
Q ss_pred HCCCCccchh
Q 041339 189 NKGLNLTDMV 198 (203)
Q Consensus 189 ~~Gl~~~dlV 198 (203)
.-||-.-||-
T Consensus 322 ~dGlPvgDLQ 331 (342)
T PF14919_consen 322 SDGLPVGDLQ 331 (342)
T ss_pred CCCcccCcCc
Confidence 9999888863
No 27
>PRK13859 type IV secretion system lipoprotein VirB7; Provisional
Probab=26.62 E-value=41 Score=22.87 Aligned_cols=31 Identities=23% Similarity=0.227 Sum_probs=22.4
Q ss_pred HHHHhhh---hhhhhcCCcceeeccCccCCCCCc
Q 041339 135 LIAIAAR---DAVFLGGGGRYEVQTGRRDGLVSL 165 (203)
Q Consensus 135 ilalAar---~av~~~GGP~~~v~~GR~D~~~s~ 165 (203)
+++||+- |-...+.||.+++-.||-...-|.
T Consensus 9 ~l~La~CqT~D~lAtckGpiFpLNVgrWqptpsD 42 (55)
T PRK13859 9 ALALAGCQTNDTLASCKGPIFPLNVGRWQPTPSD 42 (55)
T ss_pred HHHHHhccccCccccccCCccccccccccCChhh
Confidence 4556653 456678999999999997765444
No 28
>PF03744 BioW: 6-carboxyhexanoate--CoA ligase; InterPro: IPR005499 This family contains the enzyme 6-carboxyhexanoate--CoA ligase 6.2.1.14 from EC. This enzyme is involved in the first step of biotin synthesis, where it converts pimelate into pimeloyl-CoA []. The enzyme requires magnesium as a cofactor and forms a homodimer [].; GO: 0009102 biotin biosynthetic process
Probab=24.69 E-value=1.4e+02 Score=26.24 Aligned_cols=105 Identities=15% Similarity=0.144 Sum_probs=63.8
Q ss_pred cCCCceeeccCCcccc-cCCCCCCcc--hhhHHHH--HHHHHHhhCCCCCcHHHHHHHhhhhhhh------h--cCCcce
Q 041339 86 NGCDASILIDATNSEK-TAIPNLTIR--GYDIIDE--AKAAVEGFCPGVVSCADLIAIAARDAVF------L--GGGGRY 152 (203)
Q Consensus 86 ~GcDgSill~~~~~E~-~~~~N~gL~--g~~~i~~--iK~~le~~cp~~VScADilalAar~av~------~--~GGP~~ 152 (203)
.+.-|-+|++...+|+ +...++|+| -+|.-+. +|+.+.......--.-|-|+||+..+-. + +--|.|
T Consensus 107 ~~mRGA~Lld~~tGeRLe~d~~RGVRvs~mD~~~~~~~~~~l~~~~~~~~r~~EAL~LAsKV~~~PgiiaELC~SDDP~Y 186 (239)
T PF03744_consen 107 SNMRGAMLLDADTGERLEPDGERGVRVSRMDWEDRDRLKEKLLSNGLSKERFREALALASKVAAAPGIIAELCWSDDPDY 186 (239)
T ss_pred CCccceEEEeCCCCcCCCCCCCCCEEEEeecCCCcchhHHHHhhcCCCCchHHHHHHHHHHHhcCCcceEEEEecCCCCC
Confidence 5789999999765565 444677887 3555444 7788876666777889999999987643 2 345666
Q ss_pred ee-ccCccCC---CCCcccc----ccCC--CCCCCCCHHHHHHHHHHC
Q 041339 153 EV-QTGRRDG---LVSLAQS----VSIS--IPGPSASIPQTMAVFANK 190 (203)
Q Consensus 153 ~v-~~GR~D~---~~s~~~~----a~~~--LP~p~~~~~~l~~~F~~~ 190 (203)
.. |...++- +.+..-. .-++ +=.+..++++++++.+++
T Consensus 187 tTGYVA~~~~GY~RI~~mK~~G~~~GGRvffv~~~~d~~~~i~yLe~~ 234 (239)
T PF03744_consen 187 TTGYVASKKFGYHRITNMKEAGSPKGGRVFFVDGSIDIEELIDYLENQ 234 (239)
T ss_pred ceEEEEeCCcceEECccccccCCCCCCEEEEEeCCCCHHHHHHHHhcC
Confidence 53 3333331 1222111 0111 223345678888877654
No 29
>PLN02438 inositol-3-phosphate synthase
Probab=20.24 E-value=8.3e+02 Score=23.96 Aligned_cols=103 Identities=17% Similarity=0.120 Sum_probs=58.5
Q ss_pred cCCCceeeccCCcccccCCCCCCcchhhHHHHHHHHHHhhCCCCCcHHHHHHHhhhhhhhhcCCcceeecc--CccCCCC
Q 041339 86 NGCDASILIDATNSEKTAIPNLTIRGYDIIDEAKAAVEGFCPGVVSCADLIAIAARDAVFLGGGGRYEVQT--GRRDGLV 163 (203)
Q Consensus 86 ~GcDgSill~~~~~E~~~~~N~gL~g~~~i~~iK~~le~~cp~~VScADilalAar~av~~~GGP~~~v~~--GR~D~~~ 163 (203)
+|+|--|++...+.|+-.....++ .+..+.+.+.++..-+ .||.+-++|.|+-. .|-|++..-+ +.--+..
T Consensus 220 n~ld~vVVlwtAsTEr~~~~~~~~--~~t~~~l~~ai~~~~~-eispS~~YA~AAl~----eG~~fVNgsP~~t~vP~~~ 292 (510)
T PLN02438 220 NKVDKVVVLWTANTERYSNVVVGL--NDTMENLLASIEKDEA-EISPSTLYALACIL----EGVPFINGSPQNTFVPGVI 292 (510)
T ss_pred hCCCeEEEEECCCCCCCCcCCCcc--cCCHHHHHHHHhcCCC-cCChHHHHHHHHHH----cCCCeEecCCccccChhhH
Confidence 699999998865567533322232 2556666677776544 69999999998863 4445443322 2111111
Q ss_pred CccccccCCCCCC--------CCCHHHHHHHHHHCCCCccch
Q 041339 164 SLAQSVSISIPGP--------SASIPQTMAVFANKGLNLTDM 197 (203)
Q Consensus 164 s~~~~a~~~LP~p--------~~~~~~l~~~F~~~Gl~~~dl 197 (203)
.-+. ..++|-- +.-=+.|.++|..+|+.+...
T Consensus 293 elA~--~~gvpi~GDD~KSGqT~~ksvLa~~l~~RGlkv~s~ 332 (510)
T PLN02438 293 ELAV--KKNSLIGGDDFKSGQTKMKSVLVDFLVGAGIKPTSI 332 (510)
T ss_pred HHHH--HcCCCEecccccCCCchhHHHHHHHHHHcCCceeeE
Confidence 1111 1234432 222356788999999887654
Done!