Query 041340
Match_columns 236
No_of_seqs 200 out of 766
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 06:08:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041340.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041340hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02434 fatty acid hydroxylas 100.0 3E-82 6.6E-87 554.3 20.9 235 2-236 1-237 (237)
2 KOG0539 Sphingolipid fatty aci 100.0 8.6E-80 1.9E-84 522.9 14.1 232 2-234 1-238 (240)
3 COG3000 ERG3 Sterol desaturase 99.9 3.5E-21 7.5E-26 172.4 12.6 145 82-235 93-243 (271)
4 PF04116 FA_hydroxylase: Fatty 99.5 2.1E-14 4.6E-19 110.6 6.7 111 88-205 1-114 (114)
5 PLN02869 fatty aldehyde decarb 99.4 6.5E-13 1.4E-17 129.2 10.3 136 85-231 128-278 (620)
6 KOG0872 Sterol C5 desaturase [ 99.0 1E-09 2.2E-14 97.8 6.7 187 29-232 69-266 (312)
7 PLN02601 beta-carotene hydroxy 98.9 9.8E-09 2.1E-13 91.4 10.3 121 85-214 137-269 (303)
8 KOG0873 C-4 sterol methyl oxid 98.7 8E-08 1.7E-12 86.4 8.4 131 83-229 119-260 (283)
9 KOG0874 Sphingolipid hydroxyla 98.3 1.8E-07 4E-12 81.4 1.0 135 83-229 121-266 (287)
10 PF10520 Kua-UEV1_localn: Kua- 97.4 0.00021 4.5E-09 60.8 5.0 52 173-224 95-154 (178)
11 KOG3011 Ubiquitin-conjugating 96.3 0.017 3.8E-07 51.5 7.7 136 83-222 108-259 (293)
12 PRK07424 bifunctional sterol d 95.4 0.029 6.3E-07 53.4 5.9 33 196-228 143-175 (406)
13 COG5274 CYB5 Cytochrome b invo 92.6 0.015 3.3E-07 48.8 -2.1 47 17-75 110-157 (164)
14 cd03512 Alkane-hydroxylase Alk 89.6 5.6 0.00012 36.6 11.5 27 85-112 74-100 (314)
15 PLN02601 beta-carotene hydroxy 86.2 2.6 5.7E-05 38.3 6.8 79 61-141 186-275 (303)
16 PLN02220 delta-9 acyl-lipid de 83.2 38 0.00082 31.2 13.3 17 198-214 244-260 (299)
17 PLN02434 fatty acid hydroxylas 76.3 8.8 0.00019 34.2 6.5 44 82-129 164-208 (237)
18 PF10520 Kua-UEV1_localn: Kua- 74.7 15 0.00032 31.4 7.2 46 87-133 86-141 (178)
19 cd03509 DesA_FADS-like Fatty a 65.1 31 0.00067 31.3 7.6 43 164-206 30-87 (288)
20 PF10710 DUF2512: Protein of u 61.4 37 0.0008 27.6 6.7 23 84-107 88-110 (136)
21 COG3000 ERG3 Sterol desaturase 58.5 46 0.001 29.7 7.5 44 164-210 94-137 (271)
22 cd03514 CrtR_beta-carotene-hyd 57.3 50 0.0011 28.3 7.2 40 167-206 30-85 (207)
23 cd03511 Rhizopine-oxygenase-li 50.6 55 0.0012 29.1 6.6 41 165-206 49-105 (285)
24 cd03508 Delta4-sphingolipid-FA 44.9 1E+02 0.0023 28.0 7.6 11 196-206 97-107 (289)
25 PLN02579 sphingolipid delta-4 44.3 83 0.0018 29.2 6.9 40 167-206 80-136 (323)
26 cd03507 Delta12-FADS-like The 38.9 69 0.0015 27.7 5.2 11 196-206 84-94 (222)
27 cd03510 Rhizobitoxine-FADS-lik 37.9 1.2E+02 0.0025 25.3 6.3 11 196-206 73-83 (175)
28 PRK07424 bifunctional sterol d 37.4 45 0.00098 31.8 4.1 36 170-212 17-53 (406)
29 KOG1600 Fatty acid desaturase 33.7 62 0.0014 30.1 4.2 62 159-221 208-293 (321)
30 PRK11056 hypothetical protein; 32.9 1.6E+02 0.0036 23.6 5.9 46 52-97 32-81 (120)
31 PF07226 DUF1422: Protein of u 32.2 1.7E+02 0.0038 23.3 5.9 46 52-97 32-81 (117)
32 KOG4232 Delta 6-fatty acid des 29.2 1.6E+02 0.0036 28.5 6.4 42 178-219 160-224 (430)
33 COG5349 Uncharacterized protei 27.6 64 0.0014 26.0 2.8 30 47-76 77-106 (126)
34 PF00487 FA_desaturase: Fatty 27.2 93 0.002 25.6 4.0 33 174-206 19-67 (257)
35 cd03513 CrtW_beta-carotene-ket 25.7 2.2E+02 0.0048 24.9 6.2 11 196-206 85-95 (225)
36 COG3239 DesA Fatty acid desatu 24.7 2.4E+02 0.0053 26.1 6.6 49 81-130 61-127 (343)
37 PLN02598 omega-6 fatty acid de 24.4 1.7E+02 0.0037 28.2 5.6 12 195-206 175-186 (421)
38 PF05661 DUF808: Protein of un 24.2 1.1E+02 0.0024 28.1 4.1 33 147-181 73-105 (295)
39 PLN03199 delta6-acyl-lipid des 23.5 2.5E+02 0.0055 27.4 6.7 12 195-206 212-223 (485)
40 COG3239 DesA Fatty acid desatu 23.4 1.8E+02 0.0039 27.0 5.5 35 172-206 75-125 (343)
41 cd01060 Membrane-FADS-like The 23.1 1.8E+02 0.0039 21.5 4.6 12 195-206 51-62 (122)
42 PF14880 COX14: Cytochrome oxi 21.7 1.3E+02 0.0028 20.7 3.2 21 162-182 23-43 (59)
43 cd03505 Delta9-FADS-like The D 20.3 5.3E+02 0.012 21.8 8.7 18 198-215 137-154 (178)
44 PRK14748 kdpF potassium-transp 20.0 1.3E+02 0.0028 18.1 2.4 14 167-180 12-25 (29)
No 1
>PLN02434 fatty acid hydroxylase
Probab=100.00 E-value=3e-82 Score=554.29 Aligned_cols=235 Identities=80% Similarity=1.445 Sum_probs=224.9
Q ss_pred cccccccccCCChhHHhhhhcchhHHhHhhcCCCCCCCCCCCCcchhhhhcCCccchhhHhHHHHHHHHHHHHhhcCCch
Q 041340 2 VVAQEFTVDLNKPLVFQVGHLGEAYQEWVHQPIVSKEGPRFFESDFWEFLTLTVWWAIPVIWLPVVCWCISMSIRMGQTL 81 (236)
Q Consensus 2 ~~~~~~~~d~~kpl~~qv~~~~~~y~~~v~~p~~~~~~~rlF~~~~lE~~t~t~~~~~p~~w~p~~~~~~~~~~~~~~~~ 81 (236)
|+++|++||+||||++|||++||+|+||||||+++++++|||+||++|.||||+||++|++|+|+++++++.|++.+.+.
T Consensus 1 ~~~~~~~~d~~kpl~~Qv~~~~~~Y~~~vh~p~~~~~~~rlF~~~~lE~lsrt~w~vvp~iw~pvv~~~~~~~~~~~~~~ 80 (237)
T PLN02434 1 MVAQKFTVDLNKPLVFQVGHLGEDYEEWVHQPIVSKEGPRFFESDVLEFLTRTVWWAVPLIWLPVVCWCLVKSVRMGLPL 80 (237)
T ss_pred CcchhhcccccchhHHHHHHHhHHHHHHhcCCccCCCCCCCCCcHHHHHhcCCchhhhHHHHHHHHHHHHHHHHhcCCcH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999877777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhcccCCc--chhhhhhcccCCCCCCCCCCccccchHHHHHHHHHHHHHHHHhhcc
Q 041340 82 PHVALMVLFGIFVWTLLEYTLHRFLFHIKTKE--GNTIHYLLHGCHHKHPMDGLRLVFPPAATAVLLLPFWKVLSLVSTP 159 (236)
Q Consensus 82 ~~~~~~~~~g~l~w~~~EY~~HR~lfH~~~~~--~~~~h~~~Hg~HH~~P~D~~rlvfpP~~~~~i~~~~~~l~~~l~~~ 159 (236)
...++.+++|+++|+|+||++|||+||.+++. ++++||++||+||++|+|..|++|||..++++++++|.++.+++++
T Consensus 81 ~~~~~~~~~G~~~wtl~EY~lHRflfH~~p~~~~~~~~hfllHg~HH~~P~D~~rLv~PP~~~~~l~~~~~~l~~~~~~~ 160 (237)
T PLN02434 81 SAVVLMVAFGVFIWTLLEYILHRFLFHIKTKSYWGNTAHYLLHGCHHKHPMDGLRLVFPPAATAILCVPFWNLIALFATP 160 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHhhcCCCCCCCeecCcHHHHHHHHHHHHHHHHHcch
Confidence 77888899999999999999999999999876 7899999999999999999999999999888999999999989888
Q ss_pred chhhHHHHHHHHHHHHHHHhhhHhhcCCCCCChhhhhhHHHhcccCCCCCCCcccchhhhhhhcCCCCCCccccccC
Q 041340 160 TTTPALFGGGLLGYVMYDVTHYYLHHGQPSSEVPKNLKKYHLNHHFRIQNKGFGITSSLWDRVFGTLPQTKAAEKSK 236 (236)
Q Consensus 160 ~~a~~~~~g~l~gyl~Yd~~Hy~~H~~~~~~~~~~~l~~~H~~HH~~~~~~nfGvt~~lWD~lFGT~~~~~~~~~~~ 236 (236)
+.+.++++|+++||++||++||++|+.+|++++.|++|++|+.||++|+++||||||++||++|||++++++.++|.
T Consensus 161 ~~a~~~~~G~l~gYl~Yd~~Hy~lH~~~p~~~~~r~lkr~H~~HHfk~~~~~fGVTs~~wD~vFGT~~~~~~~~~s~ 237 (237)
T PLN02434 161 ATAPALFGGGLLGYVMYDCTHYFLHHGQPSTDVLRNLKKYHLNHHFRDQDKGFGITSSLWDRVFGTLPPSKAAKKKR 237 (237)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHcCCCCCCCCCcCchHHHHhcCCCCCcchhhccC
Confidence 88999999999999999999999999998889999999999999999999999999999999999999999999884
No 2
>KOG0539 consensus Sphingolipid fatty acid hydroxylase [Lipid transport and metabolism]
Probab=100.00 E-value=8.6e-80 Score=522.88 Aligned_cols=232 Identities=60% Similarity=1.103 Sum_probs=213.2
Q ss_pred cccccccccCCChhHHhhhhcchhHHhHhhcCCCCCCCCCCCCcchhhhhcCCccchhhHhHHHHHHHH-HHHHhhcCCc
Q 041340 2 VVAQEFTVDLNKPLVFQVGHLGEAYQEWVHQPIVSKEGPRFFESDFWEFLTLTVWWAIPVIWLPVVCWC-ISMSIRMGQT 80 (236)
Q Consensus 2 ~~~~~~~~d~~kpl~~qv~~~~~~y~~~v~~p~~~~~~~rlF~~~~lE~~t~t~~~~~p~~w~p~~~~~-~~~~~~~~~~ 80 (236)
+.+++++|||+|||++|||++||+|+||||||+++ |++|+|+||++|.||||.||+||++|+|++++. ...+...+.+
T Consensus 1 ~~~~~~~vDl~kpll~Qvg~lg~~Y~ewVHqP~~~-~g~r~f~sdflE~lTkT~Ww~VP~iWlPvVvy~~~~~t~~~~~s 79 (240)
T KOG0539|consen 1 MVAKNHTVDLKKPLLFQVGHLGEDYDEWVHQPVDR-GGLRLFDSDFLEPLTKTVWWVVPLIWLPVVVYGFLSFTTSYNDS 79 (240)
T ss_pred CcccccceeccccchhhhccchHHHHHHhcCcccc-CCCccccchHHHHhhcchhheehhhhhhhhhheeeeecccccch
Confidence 46899999999999999999999999999999999 799999999999999999999999999999993 2222223344
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhcccCCc----chhhhhhcccCCCCCCCCCCccccchHHHHHHHHHHHHHHHHh
Q 041340 81 LPHVALMVLFGIFVWTLLEYTLHRFLFHIKTKE----GNTIHYLLHGCHHKHPMDGLRLVFPPAATAVLLLPFWKVLSLV 156 (236)
Q Consensus 81 ~~~~~~~~~~g~l~w~~~EY~~HR~lfH~~~~~----~~~~h~~~Hg~HH~~P~D~~rlvfpP~~~~~i~~~~~~l~~~l 156 (236)
.+.+.+.|++|+++||++||.+|||+||.++.. .+++||.+||+||+.|+|.+||||||...+++++++|.++.++
T Consensus 80 ~~~~~~~f~~Gvf~WTl~EY~lHRflFH~k~~~~s~~~~t~Hfl~HGcHHk~P~D~~RLVfPP~~~~il~~pfy~~~~~v 159 (240)
T KOG0539|consen 80 VPVFSGLFVIGVFTWTLIEYTLHRFLFHIKPNPDSYWLITLHFLIHGCHHKLPMDGYRLVFPPTPFAILAAPFYLILSLV 159 (240)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHheEEEecCCCCchHHHHHHHHHhcccccCCCCCceEecCCchHHHHHHHHHHHHHHh
Confidence 556788999999999999999999999999543 7899999999999999999999999999999999999999999
Q ss_pred hccchhhHHHHHHHHHHHHHHHhhhHhhcCCCCC-ChhhhhhHHHhcccCCCCCCCcccchhhhhhhcCCCCCCccccc
Q 041340 157 STPTTTPALFGGGLLGYVMYDVTHYYLHHGQPSS-EVPKNLKKYHLNHHFRIQNKGFGITSSLWDRVFGTLPQTKAAEK 234 (236)
Q Consensus 157 ~~~~~a~~~~~g~l~gyl~Yd~~Hy~~H~~~~~~-~~~~~l~~~H~~HH~~~~~~nfGvt~~lWD~lFGT~~~~~~~~~ 234 (236)
++.+.|.++++|+++||++||++||++|+++|++ ++++.+|++|..|||++++++|||||++||++|||+...++..|
T Consensus 160 l~~~~~~a~faG~l~GYV~YDmtHYyLHhg~p~~~~~~~~lK~yHl~HHfk~q~~GfGItS~lWD~VFgTl~~~~~~~k 238 (240)
T KOG0539|consen 160 LPHPVAPAGFAGGLLGYVCYDMTHYYLHHGSPPKRPYLKHLKKYHLNHHFKHQDLGFGITSSLWDYVFGTLGPLKPLYK 238 (240)
T ss_pred cCcchhhhhhccchhhhhhhhhhhhhhhcCCCCCchHHHHHHHHHhhhhhhccccCccccHHHHHHHhccCCCCccccc
Confidence 9999999999999999999999999999999975 89999999999999999999999999999999999998775444
No 3
>COG3000 ERG3 Sterol desaturase [Lipid metabolism]
Probab=99.86 E-value=3.5e-21 Score=172.43 Aligned_cols=145 Identities=24% Similarity=0.264 Sum_probs=107.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcchhhhhhcccCCCCCCCCCCc--cccchHHHHHHHHHHHHHHHHhhcc
Q 041340 82 PHVALMVLFGIFVWTLLEYTLHRFLFHIKTKEGNTIHYLLHGCHHKHPMDGLR--LVFPPAATAVLLLPFWKVLSLVSTP 159 (236)
Q Consensus 82 ~~~~~~~~~g~l~w~~~EY~~HR~lfH~~~~~~~~~h~~~Hg~HH~~P~D~~r--lvfpP~~~~~i~~~~~~l~~~l~~~ 159 (236)
...+..+++++++-|+..|+.|| ++|..+ ++|.+|++||+.+.+... +.+.|++.++.+........++ +
T Consensus 93 ~~~~l~~~~~~~~~D~~~Y~~HR-~~H~~~-----~~w~~H~~HH~~~~~~~~t~~~~hp~e~ll~~~~~~~~~~l~-~- 164 (271)
T COG3000 93 LPFALQLLLAFLFLDLGYYWAHR-LLHRVP-----LLWAFHKVHHSSEVPDPLTALRFHPLEILLLAFLGLLPLLLL-G- 164 (271)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhhH-----HHHHHHHhhcCcccCCchhhhhcChHHHHHHHHHHHHHHHHh-c-
Confidence 34467788999999999999999 579654 578999999999876643 5577888754443333333222 3
Q ss_pred chhhHHHHHHHHHHHHHHHhhhHhhcCCCCCChh---hhhhHHHhcccCCC-CCCCcccchhhhhhhcCCCCCCcccccc
Q 041340 160 TTTPALFGGGLLGYVMYDVTHYYLHHGQPSSEVP---KNLKKYHLNHHFRI-QNKGFGITSSLWDRVFGTLPQTKAAEKS 235 (236)
Q Consensus 160 ~~a~~~~~g~l~gyl~Yd~~Hy~~H~~~~~~~~~---~~l~~~H~~HH~~~-~~~nfGvt~~lWD~lFGT~~~~~~~~~~ 235 (236)
.-..++...+.+.++.+..+|...+.+ .+.+++ ...+++|+.||.++ .|+|||.++++|||+|||+.++++++..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~H~~~~~~-~~~~~~~~v~~~p~~H~lHH~~~~~~~Nyg~~~~~WDrlFGT~~~~~~~~~~ 243 (271)
T COG3000 165 LSPVAVALLFIFLLFWAVLIHSNLDLP-LPLGWLRYVFNTPRHHRLHHSKDPYDKNYGVTLTFWDRLFGTYHPPDEREPD 243 (271)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCcccc-CCcccceeeecCchHHHHhccCCCCCCcchhhhHHHHHHcccCCCCcccCcc
Confidence 223445556677778888899888775 333444 47899999999999 6899999999999999999888766443
No 4
>PF04116 FA_hydroxylase: Fatty acid hydroxylase superfamily; InterPro: IPR006694 This superfamily includes fatty acid and carotene hydroxylases and sterol desaturases. Beta-carotene hydroxylase is involved in zeaxanthin synthesis by hydroxylating beta-carotene, but the enzyme may be involved in other pathways []. This family includes C-5 sterol desaturase and C-4 sterol methyl oxidase. Members of this family are involved in cholesterol biosynthesis and biosynthesis a plant cuticular wax. These enzymes contain two copies of a HXHH motif. Members of this family are integral membrane proteins.; GO: 0005506 iron ion binding, 0016491 oxidoreductase activity, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process
Probab=99.52 E-value=2.1e-14 Score=110.57 Aligned_cols=111 Identities=26% Similarity=0.324 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhcccCCcchhhhhhcccCCCCCC--CCCCccccchHHHHHHHHHHHHHHHHhhccchhhHH
Q 041340 88 VLFGIFVWTLLEYTLHRFLFHIKTKEGNTIHYLLHGCHHKHP--MDGLRLVFPPAATAVLLLPFWKVLSLVSTPTTTPAL 165 (236)
Q Consensus 88 ~~~g~l~w~~~EY~~HR~lfH~~~~~~~~~h~~~Hg~HH~~P--~D~~rlvfpP~~~~~i~~~~~~l~~~l~~~~~a~~~ 165 (236)
|+++++++|+.||++|| ++|..+. .|.+|+.||+.. .......+.|++.++.+.+...+.. ++....+..+
T Consensus 1 f~~~~l~~d~~~Y~~HR-l~H~~~~-----l~~~H~~HH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 73 (114)
T PF04116_consen 1 FLLGFLLWDFWEYWMHR-LLHKIPF-----LWRIHKVHHSPKNPTPLSAFRFHPLEALLLALLPLLLPL-LLLPFHALAF 73 (114)
T ss_pred CeeeHHHHHHHHHHHHH-HHhcCch-----HHHHHHHHhCCcccCchHHHHcChHHHHHHHHHHHHHHH-HHHhHhHHHH
Confidence 36789999999999999 8995554 478899999762 1112345777776544433332222 2233456777
Q ss_pred HHHHHHHHHHHHHhhhHhhcC-CCCCChhhhhhHHHhcccC
Q 041340 166 FGGGLLGYVMYDVTHYYLHHG-QPSSEVPKNLKKYHLNHHF 205 (236)
Q Consensus 166 ~~g~l~gyl~Yd~~Hy~~H~~-~~~~~~~~~l~~~H~~HH~ 205 (236)
+++++++++.|++.|...+.. .++.++++..+++|..||+
T Consensus 74 ~~~~~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~H~~HH~ 114 (114)
T PF04116_consen 74 LLGIALFYLWYIFIHSGYHHRFPPRLRYLFVTPRHHDLHHS 114 (114)
T ss_pred HHHHHHHHHHHHHhhcCccCCCCCcchhHhcCHHHHHhhCc
Confidence 888999999999999998544 4445888999999999995
No 5
>PLN02869 fatty aldehyde decarbonylase
Probab=99.42 E-value=6.5e-13 Score=129.23 Aligned_cols=136 Identities=22% Similarity=0.317 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCcchhhhhhcccCCCCCCC-CCCccccchHH-HHHHHHHHHHHHH-Hhhccch
Q 041340 85 ALMVLFGIFVWTLLEYTLHRFLFHIKTKEGNTIHYLLHGCHHKHPM-DGLRLVFPPAA-TAVLLLPFWKVLS-LVSTPTT 161 (236)
Q Consensus 85 ~~~~~~g~l~w~~~EY~~HR~lfH~~~~~~~~~h~~~Hg~HH~~P~-D~~rlvfpP~~-~~~i~~~~~~l~~-~l~~~~~ 161 (236)
+..+++=++..|+..|+.||. +|..+ +.+.+|.+||++.. +.....++|+. .++..+.+...+. .++....
T Consensus 128 l~~~Llhv~~~Df~fYW~HRl-lH~~~-----LYwr~HkvHHss~~~~P~Ts~~HP~~E~L~y~ll~~IPLllli~~g~~ 201 (620)
T PLN02869 128 LITILLHMGPVEFLYYWLHRA-LHHHY-----LYSRYHSHHHSSIVTEPITSVIHPFAEHIAYFLLFAIPLLTTIFTGTA 201 (620)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-hhhHH-----HHHHHHhhccCCCCCCchhhhcCcHHHHHHHHHHHHHHHHHHhhcccc
Confidence 444455566689999999994 69642 35678999999842 33344466653 2222222211111 1111111
Q ss_pred hhHHHHHHHHHHHHHHH-hhhHhhcC-C--C--------CCChhhhhhHHHhcccCCCCCCCcccchhhhhhhcCCCCCC
Q 041340 162 TPALFGGGLLGYVMYDV-THYYLHHG-Q--P--------SSEVPKNLKKYHLNHHFRIQNKGFGITSSLWDRVFGTLPQT 229 (236)
Q Consensus 162 a~~~~~g~l~gyl~Yd~-~Hy~~H~~-~--~--------~~~~~~~l~~~H~~HH~~~~~~nfGvt~~lWD~lFGT~~~~ 229 (236)
....+.+|+.|.. .....|.+ + | +.+++....++|..||.+ .++|||..+++||++|||+.++
T Consensus 202 ----hi~t~~~yli~~~f~~~~gHSN~El~P~~~~~~~ppLkyll~TPsfHdlHHs~-fd~NYGlfF~~WDrLFGT~d~~ 276 (620)
T PLN02869 202 ----SIAAFFGYISYIDFMNNMGHCNFELIPKWLFSIFPPLKYLMYTPSYHSLHHTQ-FRTNYSLFMPIYDYIYGTMDKS 276 (620)
T ss_pred ----hHHHHHHHHHHHHHHhcccccCccccccchhccCCcchheecCchHHhHHhcc-CCcCcccchHHHHhccCCCCCC
Confidence 1122345555443 23344544 1 1 112334457899999987 5899999999999999999764
Q ss_pred cc
Q 041340 230 KA 231 (236)
Q Consensus 230 ~~ 231 (236)
.+
T Consensus 277 s~ 278 (620)
T PLN02869 277 SD 278 (620)
T ss_pred ch
Confidence 43
No 6
>KOG0872 consensus Sterol C5 desaturase [Lipid transport and metabolism]
Probab=98.97 E-value=1e-09 Score=97.79 Aligned_cols=187 Identities=18% Similarity=0.194 Sum_probs=104.8
Q ss_pred HhhcCCCCCCCCCCCCcchhhhhcCCccchhhHhHHHHHHHHHHHHhhc-----CCchhHHHHHHHHHHHHHHHHHHHHH
Q 041340 29 WVHQPIVSKEGPRFFESDFWEFLTLTVWWAIPVIWLPVVCWCISMSIRM-----GQTLPHVALMVLFGIFVWTLLEYTLH 103 (236)
Q Consensus 29 ~v~~p~~~~~~~rlF~~~~lE~~t~t~~~~~p~~w~p~~~~~~~~~~~~-----~~~~~~~~~~~~~g~l~w~~~EY~~H 103 (236)
-+|-|. .+.+.|.--++..-++...+|.....+=.=.+...+|.-+.. ..++...+...++-+++-|+.-||.|
T Consensus 69 ~~~~~~-~~~~~r~~~~ei~~av~A~pw~sll~~~~~~m~i~gyskl~d~i~~~~~gw~~~~~~i~~flfF~Df~iYw~H 147 (312)
T KOG0872|consen 69 FVHPPF-LKNPTRQMLMEIKTAVQALPWMSLLTVPWFLMEIRGYSKLYDNIGILEYGWFLLFVSIFLFLFFTDFGIYWAH 147 (312)
T ss_pred hccccc-ccCcHHHHHHHHHHHHHhcchHHHHhHHHHHHHHhhhHHhhhccCcccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455554 334445323333334556666654332111222223322221 23444555665566788899999999
Q ss_pred hhhhcccCCcchhhhhhcccCCCCCCCCC--CccccchHHHHHHHHHHHHHHHHhhccch----hhHHHHHHHHHHHHHH
Q 041340 104 RFLFHIKTKEGNTIHYLLHGCHHKHPMDG--LRLVFPPAATAVLLLPFWKVLSLVSTPTT----TPALFGGGLLGYVMYD 177 (236)
Q Consensus 104 R~lfH~~~~~~~~~h~~~Hg~HH~~P~D~--~rlvfpP~~~~~i~~~~~~l~~~l~~~~~----a~~~~~g~l~gyl~Yd 177 (236)
|.+ |... +-+.+|..||+...-+ ..+.|.|+-.++-+++ +.+..+++|-.- +...+.++ .-.
T Consensus 148 R~l-H~~~-----vy~~LH~~HH~~~~~tpfAslafhpidg~lqaip-~~I~~Fi~Plh~~t~L~l~~f~~i-----wt~ 215 (312)
T KOG0872|consen 148 REL-HHRG-----VYKRLHKPHHIWNICTPFASLAFHPIDGFLQAIP-YHIYPFIFPLHKVTYLSLFTFVNI-----WTI 215 (312)
T ss_pred HHH-hhhH-----HHhhhcchhhhhhccCchhhhhcCcchhHhhhch-hHheeeeecchHHHHHHHHHHHHh-----Hhe
Confidence 976 7653 3467899999984322 2366777765544433 222333333111 11111111 111
Q ss_pred HhhhHhhcCCCCCChhhhhhHHHhcccCCCCCCCcccchhhhhhhcCCCCCCccc
Q 041340 178 VTHYYLHHGQPSSEVPKNLKKYHLNHHFRIQNKGFGITSSLWDRVFGTLPQTKAA 232 (236)
Q Consensus 178 ~~Hy~~H~~~~~~~~~~~l~~~H~~HH~~~~~~nfGvt~~lWD~lFGT~~~~~~~ 232 (236)
.+|...|-. ..+.-.-..+|..||-. -++|||--+.+|||+|||+..|...
T Consensus 216 ~IHd~~~~~---l~~~ingaahHtvHH~~-f~~NYG~~tilwDrmfgSfr~p~~~ 266 (312)
T KOG0872|consen 216 SIHDGIYGS---LNPPINGAAHHTVHHTY-FDYNYGQYTILWDRMFGSFRAPDHE 266 (312)
T ss_pred eeecccccc---ccCccccccccceeeee-EecCCCcEEEeHHhccCcccCcccc
Confidence 345444443 13333457899999987 6899999999999999999887654
No 7
>PLN02601 beta-carotene hydroxylase
Probab=98.90 E-value=9.8e-09 Score=91.42 Aligned_cols=121 Identities=17% Similarity=0.123 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCCcchhhhhhcccCCCCCCCCCCccccchHHHHHHHHHHHHHHHH-hh--cc--
Q 041340 85 ALMVLFGIFVWTLLEYTLHRFLFHIKTKEGNTIHYLLHGCHHKHPMDGLRLVFPPAATAVLLLPFWKVLSL-VS--TP-- 159 (236)
Q Consensus 85 ~~~~~~g~l~w~~~EY~~HR~lfH~~~~~~~~~h~~~Hg~HH~~P~D~~rlvfpP~~~~~i~~~~~~l~~~-l~--~~-- 159 (236)
++.++.+++.+.++.|+.||+++|.. .|.+|..||+.- +.. +=-+-+.+++.++|...++.+ .. +.
T Consensus 137 ~al~lgtfvgMEf~Aw~aHKYvMHG~-------LW~lH~sHH~Pr-~g~-FE~NDlFaVifAvpAIaL~~~G~~~~g~~p 207 (303)
T PLN02601 137 FALSVGAAVGMEFWARWAHRALWHDS-------LWNMHESHHKPR-EGA-FELNDVFAIVNAVPAIGLLYYGFFNKGLVP 207 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-------chhhhhhcCCCC-CCC-cccccchhhhhHHHHHHHHHHhhccccccH
Confidence 34557788889999999999999974 367899999653 221 000111111112222111111 11 11
Q ss_pred chhhHHHHHHHHHHHHHHHhhhHh-hcC-----CCCCChhhhhhHHHhcccCC-CCCCCccc
Q 041340 160 TTTPALFGGGLLGYVMYDVTHYYL-HHG-----QPSSEVPKNLKKYHLNHHFR-IQNKGFGI 214 (236)
Q Consensus 160 ~~a~~~~~g~l~gyl~Yd~~Hy~~-H~~-----~~~~~~~~~l~~~H~~HH~~-~~~~nfGv 214 (236)
.....+.+|+.+..++|-++|..+ |.. .++.+|+|++.+.|..||.. +...+||.
T Consensus 208 ~~~fgiGlGITlYGiaYffVHDgLVHqRfp~~~~a~~~Y~rrl~~AHklHHa~Ke~Gv~FGf 269 (303)
T PLN02601 208 GLCFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIANVPYLRKVAAAHQLHHTDKFKGVPYGL 269 (303)
T ss_pred HHHHHHHHhHHHHHHHHHHHhhhhhccccccCCCCCCHHHHHHHHHHHhhccCCcCCccceE
Confidence 123334667777777899999874 663 24458999999999999983 44577874
No 8
>KOG0873 consensus C-4 sterol methyl oxidase [Lipid transport and metabolism]
Probab=98.67 E-value=8e-08 Score=86.35 Aligned_cols=131 Identities=19% Similarity=0.164 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccCCcchhhhhhcccCCCCC--CCCCCccccchHHHHHHHHHHHHHHHHhhccc
Q 041340 83 HVALMVLFGIFVWTLLEYTLHRFLFHIKTKEGNTIHYLLHGCHHKH--PMDGLRLVFPPAATAVLLLPFWKVLSLVSTPT 160 (236)
Q Consensus 83 ~~~~~~~~g~l~w~~~EY~~HR~lfH~~~~~~~~~h~~~Hg~HH~~--P~D~~rlvfpP~~~~~i~~~~~~l~~~l~~~~ 160 (236)
..+..+++.+++-|+.-|+.|| ++| .+. ..+ ..|.+||.. |..-.....+|++.++.+++....-.++.+
T Consensus 119 ~~l~~l~i~~liEd~~fY~~HR-L~H-~~~-~Yk---~iHKvHHe~taPf~~sa~YaHp~E~~~lg~~~~~~p~~~~~-- 190 (283)
T KOG0873|consen 119 EMLAQLVVFFLIEDIGFYWSHR-LFH-HKW-LYK---YIHKVHHEYTAPFGLSAEYAHPLEHLFLGLGTVMGPALLCG-- 190 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-Hhc-chH-HHH---HHHhhhhcccCchhHhhhhcCHHHHHHcCChhhhhhHHhhh--
Confidence 4556777888899999999999 578 333 222 369999998 333233456788866544332211111111
Q ss_pred hhhHHHHHHHHHHH--HHHHhhhHhhc-C-CCCCChhhhhh-----HHHhcccCCCCCCCcccchhhhhhhcCCCCCC
Q 041340 161 TTPALFGGGLLGYV--MYDVTHYYLHH-G-QPSSEVPKNLK-----KYHLNHHFRIQNKGFGITSSLWDRVFGTLPQT 229 (236)
Q Consensus 161 ~a~~~~~g~l~gyl--~Yd~~Hy~~H~-~-~~~~~~~~~l~-----~~H~~HH~~~~~~nfGvt~~lWD~lFGT~~~~ 229 (236)
-.+..++ ..-..+...+| + ..|..--|-++ ++|..||.+- ..||.-++..||+++||.+..
T Consensus 191 -------H~~t~wiw~~l~i~~t~~~HsGY~fPwsl~~~~pfy~ga~~HD~HH~~f-~~n~~~~f~~~D~i~GTd~~~ 260 (283)
T KOG0873|consen 191 -------HVITLWIWIALRILETVESHSGYDFPWSLSKLIPFYGGAEHHDYHHLVF-IGNFASVFGYLDRIHGTDSTY 260 (283)
T ss_pred -------HHHHHHHHHHHHHHHHhhccCCCCCCccccccCcccCCCcccchhhhhc-cccccchhHHHHHHhccCccH
Confidence 0111111 12233444444 3 33332333333 8999999986 789999999999999999753
No 9
>KOG0874 consensus Sphingolipid hydroxylase [Lipid transport and metabolism]
Probab=98.30 E-value=1.8e-07 Score=81.42 Aligned_cols=135 Identities=24% Similarity=0.281 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccCCcchhhhh-hcccCCCCC--CCCCCccccchHHHHHHH---HHHHHHHHHh
Q 041340 83 HVALMVLFGIFVWTLLEYTLHRFLFHIKTKEGNTIHY-LLHGCHHKH--PMDGLRLVFPPAATAVLL---LPFWKVLSLV 156 (236)
Q Consensus 83 ~~~~~~~~g~l~w~~~EY~~HR~lfH~~~~~~~~~h~-~~Hg~HH~~--P~D~~rlvfpP~~~~~i~---~~~~~l~~~l 156 (236)
.....+++|+++-|-.+|.+||+ +|.... .| .+|.+||+. |..-..|.=+|++.+++- ..+-.++.-+
T Consensus 121 v~A~q~f~aflviDtWQYF~HRy-mH~NK~-----LYk~iHs~HHrL~VPYayGALyNhP~EGllLDT~G~gla~l~sgl 194 (287)
T KOG0874|consen 121 VLARQFFAAFLVIDTWQYFLHRY-MHMNKF-----LYKHIHSQHHRLIVPYAYGALYNHPVEGLLLDTIGGGLAFLLSGL 194 (287)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHH-HHHHHH-----HHHHHHhhceeEecchhhhhhhcCcchhhhhhhhchHHHHHHcCC
Confidence 34567889999999999999997 596543 33 369999986 532222444577654321 1111111111
Q ss_pred hccchhhHHH--HHHHHHHHHHHHhhhHhhcC-CCCCChhhhhhHHHhcccCC-CCCCCcccch-hhhhhhcCCCCCC
Q 041340 157 STPTTTPALF--GGGLLGYVMYDVTHYYLHHG-QPSSEVPKNLKKYHLNHHFR-IQNKGFGITS-SLWDRVFGTLPQT 229 (236)
Q Consensus 157 ~~~~~a~~~~--~g~l~gyl~Yd~~Hy~~H~~-~~~~~~~~~l~~~H~~HH~~-~~~~nfGvt~-~lWD~lFGT~~~~ 229 (236)
.+..+.+++ +++= .. --|+-.=.+ +|-.-++..-.++|..||.. ...+||.--+ .+||+++||+.+.
T Consensus 195 -spr~aiifFtfaTiK---TV--DDHCGy~lP~dpfqm~F~NNa~YHDiHHQ~yG~k~NFsQPFFtfWD~ilgTYmp~ 266 (287)
T KOG0874|consen 195 -SPRTAIIFFTFATIK---TV--DDHCGYWLPGDPFQMFFPNNAAYHDIHHQLYGTKYNFSQPFFTFWDRILGTYMPY 266 (287)
T ss_pred -CccceEEEEEeeeee---ee--ccccccccCCCceeEeccCCchhhhhhhhhhccccccCCcHHHHHHHHHhhcCCc
Confidence 122222221 1000 00 001111111 22223456667999999977 4567776543 6999999999763
No 10
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1. UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
Probab=97.43 E-value=0.00021 Score=60.81 Aligned_cols=52 Identities=17% Similarity=0.213 Sum_probs=40.4
Q ss_pred HHHHHHhhhHhhcCCCCCChhhhh--------hHHHhcccCCCCCCCcccchhhhhhhcC
Q 041340 173 YVMYDVTHYYLHHGQPSSEVPKNL--------KKYHLNHHFRIQNKGFGITSSLWDRVFG 224 (236)
Q Consensus 173 yl~Yd~~Hy~~H~~~~~~~~~~~l--------~~~H~~HH~~~~~~nfGvt~~lWD~lFG 224 (236)
-.+-+.+|...|..+.++++.+.+ |++|..||-...|.||++++-+|+.+..
T Consensus 95 v~~tnq~HkWsH~~~~~P~~V~~LQ~~gillsr~~H~~HH~aPh~~~YCI~tGw~N~~Ld 154 (178)
T PF10520_consen 95 VAFTNQFHKWSHTYKSLPPWVRFLQDAGILLSRKHHRIHHVAPHDTNYCITTGWLNPPLD 154 (178)
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHCCcccCchhhhccccCcccCCeEeecccchHHHH
Confidence 334557899999954344555554 6899999999889999999999998764
No 11
>KOG3011 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.017 Score=51.49 Aligned_cols=136 Identities=18% Similarity=0.086 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcccCC-c--chhhhhhcccCCCCCCCCCCcccc---chHHHHHHHHHHHH-HHHH
Q 041340 83 HVALMVLFGIFVWTLLEYTLHRFLFHIKTK-E--GNTIHYLLHGCHHKHPMDGLRLVF---PPAATAVLLLPFWK-VLSL 155 (236)
Q Consensus 83 ~~~~~~~~g~l~w~~~EY~~HR~lfH~~~~-~--~~~~h~~~Hg~HH~~P~D~~rlvf---pP~~~~~i~~~~~~-l~~~ 155 (236)
...++.++|+++.||..=++|-.. =.... . ...-+|..-+.||++|..-.|--| +|+.. .+.-+.. ..-+
T Consensus 108 ~~~La~~aG~i~AD~~SGl~HWaa-D~~Gsv~tP~vG~~f~rfreHH~dP~tITr~~f~~~~~ll~--~a~~f~v~~~d~ 184 (293)
T KOG3011|consen 108 EPALAAYAGYITADLGSGVYHWAA-DNYGSVSTPWVGRQFERFQEHHKDPWTITRRQFANNLHLLA--RAYTFIVLPLDL 184 (293)
T ss_pred HHHHHHHHHHHHHhhhcceeEeec-cccCccccchhHHHHHHHHhccCCcceeeHHHHhhhhHHHH--HhheeEecCHHH
Confidence 344556799999999987666532 11111 0 112234556899999965444222 12111 1111111 1111
Q ss_pred hhccchhhHHHHHHHHHHHHHHHhhhHhhcC-CCCCCh---hhh-----hhHHHhcccCCCCCCCcccchhhhhhh
Q 041340 156 VSTPTTTPALFGGGLLGYVMYDVTHYYLHHG-QPSSEV---PKN-----LKKYHLNHHFRIQNKGFGITSSLWDRV 222 (236)
Q Consensus 156 l~~~~~a~~~~~g~l~gyl~Yd~~Hy~~H~~-~~~~~~---~~~-----l~~~H~~HH~~~~~~nfGvt~~lWD~l 222 (236)
+.....--.++..+.+..++-..+|-..|.. +.| +| ++. -|++|+.||-.-++.||+|++-+|.++
T Consensus 185 ~~q~~~~h~fV~~~~i~v~~tnQiHkWsHTy~gLP-~wVv~LQd~hlilpRkhH~iHH~aPh~~yyCI~tGw~N~~ 259 (293)
T KOG3011|consen 185 AFQDPVFHGFVFLFAICVLFTNQIHKWSHTYSGLP-PWVVLLQDMHLILPRKHHRIHHVAPHNTYYCIVSGWWNWV 259 (293)
T ss_pred HhhcccHHHHHHHHHHHHHHHHHHHHHHhhhccCc-hHHHHHhhcceecccccccccccCccccceEEeechhhch
Confidence 2222111222222233333445778888875 332 33 222 278999999999999999999999875
No 12
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=95.45 E-value=0.029 Score=53.43 Aligned_cols=33 Identities=36% Similarity=0.489 Sum_probs=29.9
Q ss_pred hhHHHhcccCCCCCCCcccchhhhhhhcCCCCC
Q 041340 196 LKKYHLNHHFRIQNKGFGITSSLWDRVFGTLPQ 228 (236)
Q Consensus 196 l~~~H~~HH~~~~~~nfGvt~~lWD~lFGT~~~ 228 (236)
-+.+|..||+.+++.-|+-+.++-|+..||...
T Consensus 143 ~~~~h~rh~~~~~~~~~~~~~~~~d~~~~ta~s 175 (406)
T PRK07424 143 NRPYHWRHHFDNQNAYYCGTFTLVDKLMGTALS 175 (406)
T ss_pred cCceeEEEEeccccceeeeeEEEeehhcCcccC
Confidence 359999999999999999999999999999753
No 13
>COG5274 CYB5 Cytochrome b involved in lipid metabolism [Energy production and conversion / Lipid metabolism]
Probab=92.58 E-value=0.015 Score=48.79 Aligned_cols=47 Identities=34% Similarity=0.721 Sum_probs=39.8
Q ss_pred Hhhhhc-chhHHhHhhcCCCCCCCCCCCCcchhhhhcCCccchhhHhHHHHHHHHHHHHh
Q 041340 17 FQVGHL-GEAYQEWVHQPIVSKEGPRFFESDFWEFLTLTVWWAIPVIWLPVVCWCISMSI 75 (236)
Q Consensus 17 ~qv~~~-~~~y~~~v~~p~~~~~~~rlF~~~~lE~~t~t~~~~~p~~w~p~~~~~~~~~~ 75 (236)
.|+++| ++.|..+||+| ++++.+| +|+||.++..|+|++++-+..+.
T Consensus 110 ~~~~~llk~~yv~~v~r~---~~~l~~~---------~t~~~p~k~s~~~~Vv~~~~~~~ 157 (164)
T COG5274 110 HQIGNLLKDVYVDQVHRP---EEELPLF---------KTAWYPLKVSWVPVVVYRGLAAC 157 (164)
T ss_pred hhHHhhhhceeeecccCc---ccccccc---------cccccccccceeeEEEeeeeeee
Confidence 788888 69999999999 5678888 99999999999999887665443
No 14
>cd03512 Alkane-hydroxylase Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases. The alk genes in Pseudomonas oleovorans encode conversion of alkanes to acyl CoA. The alkane omega-hydroxylase (AlkB) system is responsible for the initial oxidation of inactivated alkanes. It is a three-component system comprising a soluble NADH-rubredoxin reductase (AlkT), a soluble rubredoxin (AlkG), and the integral membrane oxygenase (AlkB). AlkB utilizes the oxygen rebound mechanism to hydroxylate alkanes. This mechanism involves homolytic cleavage of the C-H bond by an electrophilic metal-oxo intermediate to generate a substrate-based radical. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. The active
Probab=89.63 E-value=5.6 Score=36.57 Aligned_cols=27 Identities=22% Similarity=0.404 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcccCC
Q 041340 85 ALMVLFGIFVWTLLEYTLHRFLFHIKTK 112 (236)
Q Consensus 85 ~~~~~~g~l~w~~~EY~~HR~lfH~~~~ 112 (236)
...+.+|++...+.-=..|. +.|+.++
T Consensus 74 ~~~~~~G~~~g~i~~~~aHe-l~Hr~~~ 100 (314)
T cd03512 74 GLILSLGLLSGVIGINTAHE-LIHRRSR 100 (314)
T ss_pred HHHHHHHHHHHHhhHHHHHh-ccCCCCh
Confidence 34455666665554557787 4586655
No 15
>PLN02601 beta-carotene hydroxylase
Probab=86.17 E-value=2.6 Score=38.31 Aligned_cols=79 Identities=16% Similarity=0.120 Sum_probs=50.8
Q ss_pred HhHHHHHHHHHHHHhh-cCCchhHHHHHHHHHHHHHHHHHHHHHhhhhcccCCc--------chhhhhhcccCCCCCCCC
Q 041340 61 VIWLPVVCWCISMSIR-MGQTLPHVALMVLFGIFVWTLLEYTLHRFLFHIKTKE--------GNTIHYLLHGCHHKHPMD 131 (236)
Q Consensus 61 ~~w~p~~~~~~~~~~~-~~~~~~~~~~~~~~g~l~w~~~EY~~HR~lfH~~~~~--------~~~~h~~~Hg~HH~~P~D 131 (236)
++...+++.+++.|.. .+..... ....-+|+.++-++..+.|-.+.|.+-+. +++ ...-|.+||+...+
T Consensus 186 VifAvpAIaL~~~G~~~~g~~p~~-~fgiGlGITlYGiaYffVHDgLVHqRfp~~~~a~~~Y~rr-l~~AHklHHa~Ke~ 263 (303)
T PLN02601 186 IVNAVPAIGLLYYGFFNKGLVPGL-CFGAGLGITVFGMAYMFVHDGLVHKRFPVGPIANVPYLRK-VAAAHQLHHTDKFK 263 (303)
T ss_pred hhhHHHHHHHHHHhhccccccHHH-HHHHHHhHHHHHHHHHHHhhhhhccccccCCCCCCHHHHH-HHHHHHhhccCCcC
Confidence 4555667777777764 3333222 23457999999999999999999987432 333 35679999995433
Q ss_pred C--CccccchHH
Q 041340 132 G--LRLVFPPAA 141 (236)
Q Consensus 132 ~--~rlvfpP~~ 141 (236)
. ..+++.|..
T Consensus 264 Gv~FGfll~P~e 275 (303)
T PLN02601 264 GVPYGLFLGPKE 275 (303)
T ss_pred CccceEEeccHH
Confidence 3 224444443
No 16
>PLN02220 delta-9 acyl-lipid desaturase
Probab=83.17 E-value=38 Score=31.18 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=12.8
Q ss_pred HHHhcccCCCCCCCccc
Q 041340 198 KYHLNHHFRIQNKGFGI 214 (236)
Q Consensus 198 ~~H~~HH~~~~~~nfGv 214 (236)
..|..||.-..+..+|+
T Consensus 244 gwHNnHHafP~sar~G~ 260 (299)
T PLN02220 244 SWHNNHHAFESSARQGL 260 (299)
T ss_pred cccccccCCccchhhCC
Confidence 49999998766666663
No 17
>PLN02434 fatty acid hydroxylase
Probab=76.33 E-value=8.8 Score=34.19 Aligned_cols=44 Identities=20% Similarity=0.123 Sum_probs=31.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhcccCCc-chhhhhhcccCCCCCC
Q 041340 82 PHVALMVLFGIFVWTLLEYTLHRFLFHIKTKE-GNTIHYLLHGCHHKHP 129 (236)
Q Consensus 82 ~~~~~~~~~g~l~w~~~EY~~HR~lfH~~~~~-~~~~h~~~Hg~HH~~P 129 (236)
..+.+..++|.++++.+-|.+|.. ++.. ..+-..+.|..||...
T Consensus 164 ~~~~~G~l~gYl~Yd~~Hy~lH~~----~p~~~~~r~lkr~H~~HHfk~ 208 (237)
T PLN02434 164 PALFGGGLLGYVMYDCTHYFLHHG----QPSTDVLRNLKKYHLNHHFRD 208 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc----CcchHHHHHHHHHHHHHcCCC
Confidence 344556688999999999999973 3332 3334567899999764
No 18
>PF10520 Kua-UEV1_localn: Kua-ubiquitin conjugating enzyme hybrid localisation domain; InterPro: IPR019547 This entry represents part of the transcript of the fusion of two genes, the UEV1. UEV1 is an enzymatically inactive variant of the E2 ubiquitin-conjugating enzymes that regulate non-canonical elongation of ubiquitin chains, and Kua, an otherwise unknown gene. UEV1A is a nuclear protein, whereas both Kua and Kua-UEV localise to cytoplasmic structures, indicating that the addition of a Kua domain to UEV confers new biological properties. UEV1-Kua carries the B domain with its characteristic double histidine motif, and it is probably this domain which determines the cytoplasmic localisation. It is postulated that this hybrid transcript could preferentially direct the variant polyubiquitination of substrates closely associated with the cytoplasmic face of the endoplasmic reticulum, possibly, although not necessarily, in conjunction with membrane-bound ubiquitin-conjugating enzymes [].
Probab=74.70 E-value=15 Score=31.41 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcccCCc------chhhhhh----cccCCCCCCCCCC
Q 041340 87 MVLFGIFVWTLLEYTLHRFLFHIKTKE------GNTIHYL----LHGCHHKHPMDGL 133 (236)
Q Consensus 87 ~~~~g~l~w~~~EY~~HR~lfH~~~~~------~~~~h~~----~Hg~HH~~P~D~~ 133 (236)
.|+..+.++-.+-=-+|++. |..... .++.+-. -|+.||..|.|..
T Consensus 86 ~f~~~~~~~v~~tnq~HkWs-H~~~~~P~~V~~LQ~~gillsr~~H~~HH~aPh~~~ 141 (178)
T PF10520_consen 86 CFLFSFAFFVAFTNQFHKWS-HTYKSLPPWVRFLQDAGILLSRKHHRIHHVAPHDTN 141 (178)
T ss_pred HHHHHHHHHHHHHHHHHHHH-cCCCCCCHHHHHHHHCCcccCchhhhccccCcccCC
Confidence 34444444444444568865 873221 2232322 3999999998874
No 19
>cd03509 DesA_FADS-like Fatty acid desaturase protein family subgroup, a delta-12 acyl-lipid desaturase-like, DesA-like, yet uncharacterized subgroup of membrane fatty acid desaturase proteins found in alpha-, beta-, and gamma-proteobacteria. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of these sequences also reveals three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=65.06 E-value=31 Score=31.31 Aligned_cols=43 Identities=23% Similarity=0.149 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHhhhHhhcCCCCCChh---------------hhhhHHHhcccCC
Q 041340 164 ALFGGGLLGYVMYDVTHYYLHHGQPSSEVP---------------KNLKKYHLNHHFR 206 (236)
Q Consensus 164 ~~~~g~l~gyl~Yd~~Hy~~H~~~~~~~~~---------------~~l~~~H~~HH~~ 206 (236)
..+++++++...+...|-+.|..-.+++++ ...+..|..||..
T Consensus 30 ~~~~~~~~~~~~~~l~Hd~~Hg~~~~~~~~N~~~g~~~~~l~~p~~~wr~~H~~HH~~ 87 (288)
T cd03509 30 ATLLLIPLAALHSSLQHELLHGHPTRSRWVNEALGYPPLALWYPYTRYRDTHLAHHRD 87 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCcccChHHHHHHHHHHHHHhcCHHHHHHHHHHHcCC
Confidence 344445555566778899988863332222 2346789999964
No 20
>PF10710 DUF2512: Protein of unknown function (DUF2512); InterPro: IPR019649 Proteins in this entry are predicted to be integral membrane proteins, and many of them are annotated as being YndM protein. They are all found in Firmicutes. The true function is not known.
Probab=61.36 E-value=37 Score=27.63 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhh
Q 041340 84 VALMVLFGIFVWTLLEYTLHRFLF 107 (236)
Q Consensus 84 ~~~~~~~g~l~w~~~EY~~HR~lf 107 (236)
..+.++.++ +-...||..|||+.
T Consensus 88 ~~~allsA~-~i~v~E~fFH~yl~ 110 (136)
T PF10710_consen 88 AWAALLSAV-LIGVGEYFFHRYLL 110 (136)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHH
Confidence 344444444 45789999999974
No 21
>COG3000 ERG3 Sterol desaturase [Lipid metabolism]
Probab=58.55 E-value=46 Score=29.75 Aligned_cols=44 Identities=20% Similarity=0.187 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHhhhHhhcCCCCCChhhhhhHHHhcccCCCCCC
Q 041340 164 ALFGGGLLGYVMYDVTHYYLHHGQPSSEVPKNLKKYHLNHHFRIQNK 210 (236)
Q Consensus 164 ~~~~g~l~gyl~Yd~~Hy~~H~~~~~~~~~~~l~~~H~~HH~~~~~~ 210 (236)
.+....+++.++.|...|..|.-.- ..+.+++.|..||......
T Consensus 94 ~~~l~~~~~~~~~D~~~Y~~HR~~H---~~~~~w~~H~~HH~~~~~~ 137 (271)
T COG3000 94 PFALQLLLAFLFLDLGYYWAHRLLH---RVPLLWAFHKVHHSSEVPD 137 (271)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHhhcCcccCC
Confidence 3345555666666666665555311 1235668999999885333
No 22
>cd03514 CrtR_beta-carotene-hydroxylase Beta-carotene hydroxylase (CrtR), the carotenoid zeaxanthin biosynthetic enzyme catalyzes the addition of hydroxyl groups to the beta-ionone rings of beta-carotene to form zeaxanthin and is found in bacteria and red algae. Carotenoids are important natural pigments; zeaxanthin and lutein are the only dietary carotenoids that accumulate in the macular region of the retina and lens. It is proposed that these carotenoids protect ocular tissues against photooxidative damage. CrtR does not show overall amino acid sequence similarity to the beta-carotene hydroxylases similar to CrtZ, an astaxanthin biosynthetic beta-carotene hydroxylase. However, CrtR does show sequence similarity to the green alga, Haematococcus pluvialis, beta-carotene ketolase (CrtW), which converts beta-carotene to canthaxanthin. Sequences of the CrtR_beta-carotene-hydroxylase domain family, as well as, the CrtW_beta-carotene-ketolase domain family appear to be structurally related
Probab=57.28 E-value=50 Score=28.30 Aligned_cols=40 Identities=18% Similarity=0.131 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhhhHhhcCCCCCChh----------------hhhhHHHhcccCC
Q 041340 167 GGGLLGYVMYDVTHYYLHHGQPSSEVP----------------KNLKKYHLNHHFR 206 (236)
Q Consensus 167 ~g~l~gyl~Yd~~Hy~~H~~~~~~~~~----------------~~l~~~H~~HH~~ 206 (236)
.++++.+.++-..|-+.|..-.++++. ...|+.|..||..
T Consensus 30 ~~~~~~~~~~~~~Hda~H~~~~~~~~~N~~~g~~~~~~~~~~~~~w~~~H~~HH~~ 85 (207)
T cd03514 30 LNTLSLHLAGTVIHDASHKAASRNRWINELIGHVSAFFLGFPFPVFRRVHMQHHAH 85 (207)
T ss_pred HHHHHHHHHHHHHHHcccccccCCccHHHHHHHHHHHHHhCCHHHHHHHHHHHhcC
Confidence 334445566667788888752222222 2357899999977
No 23
>cd03511 Rhizopine-oxygenase-like This CD includes the putative hydrocarbon oxygenase, MocD, a bacterial rhizopine (3-O-methyl-scyllo-inosamine, 3-O-MSI) oxygenase, and other related proteins. It has been proposed that MocD, MocE (Rieske-like ferredoxin), and MocF (ferredoxin reductase) under the regulation of MocR, act in concert to form a ferredoxin oxygenase system that demethylates 3-O-MSI to form scyllo-inosamine. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA d
Probab=50.55 E-value=55 Score=29.12 Aligned_cols=41 Identities=20% Similarity=0.174 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHhhhHhhcCCCCCChh----------------hhhhHHHhcccCC
Q 041340 165 LFGGGLLGYVMYDVTHYYLHHGQPSSEVP----------------KNLKKYHLNHHFR 206 (236)
Q Consensus 165 ~~~g~l~gyl~Yd~~Hy~~H~~~~~~~~~----------------~~l~~~H~~HH~~ 206 (236)
++.|...+ .++...|-+.|..-.++++. ...+..|..||..
T Consensus 49 ~~~g~~~~-~~~~~~He~~H~~~~~~~~~N~~~g~l~~~~~~~~~~~~~~~H~~HH~~ 105 (285)
T cd03511 49 LVYGVLYA-ALFARWHECVHGTAFATRWLNDAVGQIAGLMILLPPDFFRWSHARHHRY 105 (285)
T ss_pred HHHHHHHH-HHHHHHHHhhcccccCCchHHHHHHHHHHHHhcCChHHHHHHHHHHhcC
Confidence 34444444 45677898888863222222 1236789999976
No 24
>cd03508 Delta4-sphingolipid-FADS-like The Delta4-sphingolipid Fatty Acid Desaturase (Delta4-sphingolipid-FADS)-like CD includes the integral-membrane enzymes, dihydroceramide Delta-4 desaturase, involved in the synthesis of sphingosine; and the human membrane fatty acid (lipid) desaturase (MLD), reported to modulate biosynthesis of the epidermal growth factor receptor; and other related proteins. These proteins are found in various eukaryotes including vertebrates, higher plants, and fungi. Studies show that MLD is localized to the endoplasmic reticulum. As with other members of this superfamily, this domain family has extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXXHH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for
Probab=44.90 E-value=1e+02 Score=27.96 Aligned_cols=11 Identities=64% Similarity=1.032 Sum_probs=9.3
Q ss_pred hhHHHhcccCC
Q 041340 196 LKKYHLNHHFR 206 (236)
Q Consensus 196 l~~~H~~HH~~ 206 (236)
.|.+|..||..
T Consensus 97 ~r~~H~~HH~~ 107 (289)
T cd03508 97 FKKYHLEHHRY 107 (289)
T ss_pred HHHHHHHhccC
Confidence 47799999987
No 25
>PLN02579 sphingolipid delta-4 desaturase
Probab=44.27 E-value=83 Score=29.18 Aligned_cols=40 Identities=28% Similarity=0.387 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhhhHhhcCCCCC-----------------ChhhhhhHHHhcccCC
Q 041340 167 GGGLLGYVMYDVTHYYLHHGQPSS-----------------EVPKNLKKYHLNHHFR 206 (236)
Q Consensus 167 ~g~l~gyl~Yd~~Hy~~H~~~~~~-----------------~~~~~l~~~H~~HH~~ 206 (236)
.|+.+...++...|-+.|..-.++ +.....+++|..||..
T Consensus 80 ~~g~~~~~lf~~~HD~~Hg~~f~~~~~N~~lg~~~~l~~g~~~~~~~~~~H~~HH~~ 136 (323)
T PLN02579 80 FGGFLNHNLFLAIHELSHNLAFKTPVYNRWLGIFANLPIGIPMSVTFQKYHLEHHRF 136 (323)
T ss_pred HHHHHHHHHHHHHHHhhHhhhcCCHHHHHHHHHHHHHhhcCCHhHHHHHHHHHHccC
Confidence 344444444666788888741111 1112357899999977
No 26
>cd03507 Delta12-FADS-like The Delta12 Fatty Acid Desaturase (Delta12-FADS)-like CD includes the integral-membrane enzymes, delta-12 acyl-lipid desaturases, oleate 12-hydroxylases, omega3 and omega6 fatty acid desaturases, and other related proteins, found in a wide range of organisms including higher plants, green algae, diatoms, nematodes, fungi, and bacteria. The expression of these proteins appears to be temperature dependent: decreases in temperature result in increased levels of fatty acid desaturation within membrane lipids subsequently altering cell membrane fluidity. An important enzyme for the production of polyunsaturates in plants is the oleate delta-12 desaturase (Arabidopsis FAD2) of the endoplasmic reticulum. This enzyme accepts l-acyl-2-oleoyl-sn-glycero-3-phosphocholine as substrate and requires NADH:cytochrome b oxidoreductase, cytochrome b, and oxygen for activity. FAD2 converts oleate(18:1) to linoleate (18:2) and is closely related to oleate 12-hydroxylase which cat
Probab=38.88 E-value=69 Score=27.67 Aligned_cols=11 Identities=27% Similarity=0.353 Sum_probs=9.1
Q ss_pred hhHHHhcccCC
Q 041340 196 LKKYHLNHHFR 206 (236)
Q Consensus 196 l~~~H~~HH~~ 206 (236)
.|+.|..||..
T Consensus 84 w~~~H~~HH~~ 94 (222)
T cd03507 84 WRISHNRHHAH 94 (222)
T ss_pred HHHHHHHHHhc
Confidence 47889999977
No 27
>cd03510 Rhizobitoxine-FADS-like This CD includes the dihydrorhizobitoxine fatty acid desaturase (RtxC) characterized in Bradyrhizobium japonicum USDA110, and other related proteins. Dihydrorhizobitoxine desaturase is reported to be involved in the final step of rhizobitoxine biosynthesis. This domain family appears to be structurally related to the membrane fatty acid desaturases and the alkane hydroxylases. They all share in common extensive hydrophobic regions that would be capable of spanning the membrane bilayer at least twice. Comparison of sequences also reveals the existence of three regions of conserved histidine cluster motifs that contain eight histidine residues: HXXXH, HXX(X)HH, and HXXHH. These histidine residues are reported to be catalytically essential and proposed to be the ligands for the iron atoms contained within homologs, stearoyl CoA desaturase and alkane hydroxylase.
Probab=37.93 E-value=1.2e+02 Score=25.32 Aligned_cols=11 Identities=36% Similarity=0.718 Sum_probs=9.1
Q ss_pred hhHHHhcccCC
Q 041340 196 LKKYHLNHHFR 206 (236)
Q Consensus 196 l~~~H~~HH~~ 206 (236)
.++.|..||..
T Consensus 73 ~r~~H~~HH~~ 83 (175)
T cd03510 73 YRRSHLKHHRH 83 (175)
T ss_pred HHHHHHHHhCc
Confidence 46899999976
No 28
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=37.38 E-value=45 Score=31.82 Aligned_cols=36 Identities=22% Similarity=0.154 Sum_probs=26.5
Q ss_pred HHHHHHHHHhhhHhhcCCCCCChhhhhhHHHhcccCC-CCCCCc
Q 041340 170 LLGYVMYDVTHYYLHHGQPSSEVPKNLKKYHLNHHFR-IQNKGF 212 (236)
Q Consensus 170 l~gyl~Yd~~Hy~~H~~~~~~~~~~~l~~~H~~HH~~-~~~~nf 212 (236)
+..=+.-|..|+.+|+.+ .+.|.|..||.. +.|-++
T Consensus 17 ~~~~~~~d~~h~~~h~~~-------~l~~~h~~hh~~~~~~~~~ 53 (406)
T PRK07424 17 LWVEIVRDSYHALAHQWN-------PLYRLHNWHHRVFRPDLSV 53 (406)
T ss_pred HHHHHHHHHHHHHHhhch-------HHHHHHHhHHhhcCCcCCc
Confidence 333456778899999975 788999999966 555555
No 29
>KOG1600 consensus Fatty acid desaturase [Lipid transport and metabolism]
Probab=33.72 E-value=62 Score=30.13 Aligned_cols=62 Identities=19% Similarity=0.140 Sum_probs=33.6
Q ss_pred cchhhHHHHHHHHHHHH-HH---HhhhHhhcC--C-------CCCChhhhh----hHHHhcccCCCC-------CCCccc
Q 041340 159 PTTTPALFGGGLLGYVM-YD---VTHYYLHHG--Q-------PSSEVPKNL----KKYHLNHHFRIQ-------NKGFGI 214 (236)
Q Consensus 159 ~~~a~~~~~g~l~gyl~-Yd---~~Hy~~H~~--~-------~~~~~~~~l----~~~H~~HH~~~~-------~~nfGv 214 (236)
.+.+.++++| ++++++ +- +++..+|.. + +++.++-.+ -..|..||.-.. .+-+++
T Consensus 208 ~~~~~~~~~~-~~r~~~~lh~TwlVNSaaH~~G~rp~d~~~~s~nn~~~s~~t~GEgwHNyHH~Fp~dyr~ge~~y~~d~ 286 (321)
T KOG1600|consen 208 EGMGLAFYVG-LFRYCIVLHATWLVNSAAHIWGSRPYDTNDTSRNNWWVSILTFGEGWHNYHHAFPWDYRHGEEWYQLDI 286 (321)
T ss_pred ecchhhhhHH-HHHHHHHHhhHHhhhhHHHHeecccCCCCCCcccceEEEEEEeccccccccccCchhhHhhhHHhhhCc
Confidence 3455667777 555544 44 345556663 2 222221111 258999996532 255677
Q ss_pred chhhhhh
Q 041340 215 TSSLWDR 221 (236)
Q Consensus 215 t~~lWD~ 221 (236)
|..+-|-
T Consensus 287 T~~~I~~ 293 (321)
T KOG1600|consen 287 TWYLIDF 293 (321)
T ss_pred chHHHHH
Confidence 7777664
No 30
>PRK11056 hypothetical protein; Provisional
Probab=32.93 E-value=1.6e+02 Score=23.55 Aligned_cols=46 Identities=15% Similarity=0.344 Sum_probs=30.0
Q ss_pred cCCccchhhHhHHHHHHHHHHHHhhc----CCchhHHHHHHHHHHHHHHH
Q 041340 52 TLTVWWAIPVIWLPVVCWCISMSIRM----GQTLPHVALMVLFGIFVWTL 97 (236)
Q Consensus 52 t~t~~~~~p~~w~p~~~~~~~~~~~~----~~~~~~~~~~~~~g~l~w~~ 97 (236)
|-+++.+.|++=+-.++|+++.-... .......+++|++|++.++-
T Consensus 32 s~VpFSiFPlIaLvLavycLyQ~Yl~~~m~eg~P~~a~acFflG~f~ySA 81 (120)
T PRK11056 32 SIVPFSIFPLIALVLAVYCLHQRYLNRPMPEGLPGLAAACFFLGVFLYSA 81 (120)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 45678888888777778887765521 11223456788888887654
No 31
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=32.16 E-value=1.7e+02 Score=23.32 Aligned_cols=46 Identities=15% Similarity=0.261 Sum_probs=30.0
Q ss_pred cCCccchhhHhHHHHHHHHHHHHhhc----CCchhHHHHHHHHHHHHHHH
Q 041340 52 TLTVWWAIPVIWLPVVCWCISMSIRM----GQTLPHVALMVLFGIFVWTL 97 (236)
Q Consensus 52 t~t~~~~~p~~w~p~~~~~~~~~~~~----~~~~~~~~~~~~~g~l~w~~ 97 (236)
|-.++.+.|++=+-+++++++.-... +......+++|++|++.++-
T Consensus 32 s~VpFSiFPlIaLvLavy~LyQ~Yl~~~m~eg~P~~a~acFflG~f~ySA 81 (117)
T PF07226_consen 32 SEVPFSIFPLIALVLAVYCLYQRYLNHPMPEGTPKLALACFFLGLFGYSA 81 (117)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 45678888888777788887766521 11223456788888887654
No 32
>KOG4232 consensus Delta 6-fatty acid desaturase/delta-8 sphingolipid desaturase [Lipid transport and metabolism]
Probab=29.21 E-value=1.6e+02 Score=28.50 Aligned_cols=42 Identities=21% Similarity=0.053 Sum_probs=25.3
Q ss_pred HhhhHhhcCCCCCChh-----------------hhhhHHHhcccCC------CCCCCcccchhhh
Q 041340 178 VTHYYLHHGQPSSEVP-----------------KNLKKYHLNHHFR------IQNKGFGITSSLW 219 (236)
Q Consensus 178 ~~Hy~~H~~~~~~~~~-----------------~~l~~~H~~HH~~------~~~~nfGvt~~lW 219 (236)
..|-+.|....+++.+ .+.+.+|..||.+ |+|.++-=.+..|
T Consensus 160 l~Hd~gH~~i~~~~~wN~~~~~fv~n~L~G~sa~WW~~~H~~HHa~pN~~~~DpDi~~~P~fl~g 224 (430)
T KOG4232|consen 160 LQHDYGHLSIFKNSKWNHLAQKFVGNHLKGFSAAWWKSHHNQHHAAPNSLDKDPDIDFEPAFLLG 224 (430)
T ss_pred HhcccccccccccccHHHHHHHHHhhhcccccHHHHHHHHhhhhccCccCCCCccccccchhhhC
Confidence 5677777754433222 3456799999987 5666664333333
No 33
>COG5349 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.57 E-value=64 Score=26.04 Aligned_cols=30 Identities=20% Similarity=0.409 Sum_probs=25.0
Q ss_pred hhhhhcCCccchhhHhHHHHHHHHHHHHhh
Q 041340 47 FWEFLTLTVWWAIPVIWLPVVCWCISMSIR 76 (236)
Q Consensus 47 ~lE~~t~t~~~~~p~~w~p~~~~~~~~~~~ 76 (236)
+.|.-..-+-|+..++|+|+.+.+....+|
T Consensus 77 ~~e~~~~~p~W~hl~vw~P~~~~~sL~~lr 106 (126)
T COG5349 77 WVEVTLNPPLWVHLLVWLPLTLALSLLLLR 106 (126)
T ss_pred hhhhccCCCchhhhHHHHHHHHHHHHHhhh
Confidence 577778888899999999998888777765
No 34
>PF00487 FA_desaturase: Fatty acid desaturase This entry is only a subset of the Pfam family.; InterPro: IPR005804 Fatty acid desaturases are enzymes that catalyse the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: Bacterial fatty acid desaturases. Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 1. ; GO: 0006629 lipid metabolic process
Probab=27.25 E-value=93 Score=25.55 Aligned_cols=33 Identities=18% Similarity=0.139 Sum_probs=19.0
Q ss_pred HHHHHhhhHhhcCCCCCChh----------------hhhhHHHhcccCC
Q 041340 174 VMYDVTHYYLHHGQPSSEVP----------------KNLKKYHLNHHFR 206 (236)
Q Consensus 174 l~Yd~~Hy~~H~~~~~~~~~----------------~~l~~~H~~HH~~ 206 (236)
.+....|.+.|..-.+++.+ ...+..|..||..
T Consensus 19 ~~~~~~H~~~H~~~~~~~~~n~~l~~~~~~~~~~~~~~wr~~H~~HH~~ 67 (257)
T PF00487_consen 19 RLFGLAHDAGHGAFFRSRWLNDLLGRLLGLPIGGPYSSWRISHNRHHHY 67 (257)
T ss_pred HHHHHHHHHhccCCcccChHHHHHHHHHHHHhcCCHhHhheeeeccccc
Confidence 34457788888842111111 1236788889865
No 35
>cd03513 CrtW_beta-carotene-ketolase Beta-carotene ketolase/oxygenase (CrtW, also known as CrtO), the carotenoid astaxanthin biosynthetic enzyme, initially catalyzes the addition of two keto groups to carbons C4 and C4' of beta-carotene. Carotenoids are important natural pigments produced by many microorganisms and plants. Astaxanthin is reported to be an antioxidant, an anti-cancer agent, and an immune system stimulant. A number of bacteria and green algae can convert beta-carotene into astaxanthin by using several ketocarotenoids as intermediates and CrtW and a beta-carotene hydroxylase (CrtZ). CrtW initially converts beta-carotene to canthaxanthin via echinenone, and CrtZ initially mediates the conversion of beta-carotene to zeaxanthin via beta-cryptoxanthin. After a few more intermediates are formed, CrtW and CrtZ act in combination to produce astaxanthin. Sequences of this domain family appear to be structurally related to membrane fatty acid desaturases and alkane hydroxylases. Th
Probab=25.65 E-value=2.2e+02 Score=24.92 Aligned_cols=11 Identities=36% Similarity=0.395 Sum_probs=9.3
Q ss_pred hhHHHhcccCC
Q 041340 196 LKKYHLNHHFR 206 (236)
Q Consensus 196 l~~~H~~HH~~ 206 (236)
.++.|..||..
T Consensus 85 ~~~~H~~HH~~ 95 (225)
T cd03513 85 LLRKHHLHHRH 95 (225)
T ss_pred HHHHHHHHcCC
Confidence 46899999987
No 36
>COG3239 DesA Fatty acid desaturase [Lipid metabolism]
Probab=24.66 E-value=2.4e+02 Score=26.14 Aligned_cols=49 Identities=20% Similarity=0.108 Sum_probs=27.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhcccCCc---c--------------hhhhhhc-ccCCCCCCC
Q 041340 81 LPHVALMVLFGIFVWTLLEYTLHRFLFHIKTKE---G--------------NTIHYLL-HGCHHKHPM 130 (236)
Q Consensus 81 ~~~~~~~~~~g~l~w~~~EY~~HR~lfH~~~~~---~--------------~~~h~~~-Hg~HH~~P~ 130 (236)
+...+++++.+-++.+...=+.|-. .|.-..+ . .--.|+. |-.||++.+
T Consensus 61 w~~~~l~~~~~~~~l~~~~~v~Hd~-~Hgs~~~~r~iNd~ig~l~~~~~~~p~~~wR~~H~~HH~~t~ 127 (343)
T COG3239 61 WWLLPLALLLAGLLLTGLFSVGHDC-GHGSFFKNRWINDLIGHLAAALLLAPPVFWRISHNQHHAHTN 127 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhc-cccchhhhhhHHHHHHHHHHHHHhcChhhhhhhHHHhhcccC
Confidence 3444455555555556666677774 5763221 0 0122444 988999965
No 37
>PLN02598 omega-6 fatty acid desaturase
Probab=24.36 E-value=1.7e+02 Score=28.24 Aligned_cols=12 Identities=25% Similarity=0.299 Sum_probs=9.3
Q ss_pred hhhHHHhcccCC
Q 041340 195 NLKKYHLNHHFR 206 (236)
Q Consensus 195 ~l~~~H~~HH~~ 206 (236)
..|..|..||..
T Consensus 175 ~wr~~H~~HH~~ 186 (421)
T PLN02598 175 PWRIKHNTHHAH 186 (421)
T ss_pred HHHHHHHHHccC
Confidence 346788999977
No 38
>PF05661 DUF808: Protein of unknown function (DUF808); InterPro: IPR008526 This family consists of several bacterial proteins of unknown function.
Probab=24.20 E-value=1.1e+02 Score=28.12 Aligned_cols=33 Identities=30% Similarity=0.431 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHHHHHhhh
Q 041340 147 LPFWKVLSLVSTPTTTPALFGGGLLGYVMYDVTHY 181 (236)
Q Consensus 147 ~~~~~l~~~l~~~~~a~~~~~g~l~gyl~Yd~~Hy 181 (236)
+|.-++++.+.|+........|+ .|+|||-..-
T Consensus 73 lP~ALllSafaPw~itplLmlGG--~yLcfEGaEK 105 (295)
T PF05661_consen 73 LPAALLLSAFAPWAITPLLMLGG--AYLCFEGAEK 105 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH--HHHHHhHHHH
Confidence 45555556565654445555665 5899996543
No 39
>PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional
Probab=23.47 E-value=2.5e+02 Score=27.35 Aligned_cols=12 Identities=33% Similarity=0.244 Sum_probs=9.4
Q ss_pred hhhHHHhcccCC
Q 041340 195 NLKKYHLNHHFR 206 (236)
Q Consensus 195 ~l~~~H~~HH~~ 206 (236)
+.+..|..||..
T Consensus 212 wW~~~Hn~HH~~ 223 (485)
T PLN03199 212 WWKNKHNGHHAV 223 (485)
T ss_pred HHHHHHhhhhcC
Confidence 346789999976
No 40
>COG3239 DesA Fatty acid desaturase [Lipid metabolism]
Probab=23.39 E-value=1.8e+02 Score=26.98 Aligned_cols=35 Identities=17% Similarity=0.040 Sum_probs=21.4
Q ss_pred HHHHHHHhhhHhhcCCCCCChhh----------------hhhHHHhcccCC
Q 041340 172 GYVMYDVTHYYLHHGQPSSEVPK----------------NLKKYHLNHHFR 206 (236)
Q Consensus 172 gyl~Yd~~Hy~~H~~~~~~~~~~----------------~l~~~H~~HH~~ 206 (236)
.-.+-...|-+.|-.-.++++++ ..|..|..||..
T Consensus 75 l~~~~~v~Hd~~Hgs~~~~r~iNd~ig~l~~~~~~~p~~~wR~~H~~HH~~ 125 (343)
T COG3239 75 LTGLFSVGHDCGHGSFFKNRWINDLIGHLAAALLLAPPVFWRISHNQHHAH 125 (343)
T ss_pred HHHHHhhhhhccccchhhhhhHHHHHHHHHHHHHhcChhhhhhhHHHhhcc
Confidence 33445577888887533333333 235669999976
No 41
>cd01060 Membrane-FADS-like The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane hydroxylases, beta carotene ketolases (CrtW-like), hydroxylases (CrtR-like), and other related proteins. They are present in all groups of organisms with the exception of archaea. Membrane FADSs are non-heme, iron-containing, oxygen-dependent enzymes involved in regioselective introduction of double bonds in fatty acyl aliphatic chains. They play an important role in the maintenance of the proper structure and functioning of biological membranes. Alkane hydroxylases are bacterial, integral-membrane di-iron enzymes that share a requirement for iron and oxygen for activity similar to that of membrane FADSs, and are involved in the initial oxidation of inactivated alkanes. Beta-carotene ketolase and beta-carotene hydroxylase are carotenoid biosynthetic enzymes for astaxanthin and zeaxanthin, respectively. This superfamily domain has extensive hydrophobic regions that would
Probab=23.15 E-value=1.8e+02 Score=21.53 Aligned_cols=12 Identities=25% Similarity=0.288 Sum_probs=9.1
Q ss_pred hhhHHHhcccCC
Q 041340 195 NLKKYHLNHHFR 206 (236)
Q Consensus 195 ~l~~~H~~HH~~ 206 (236)
..+..|..||..
T Consensus 51 ~~~~~H~~HH~~ 62 (122)
T cd01060 51 WWRRSHRRHHRY 62 (122)
T ss_pred HHHHHHHHHhcC
Confidence 346789999976
No 42
>PF14880 COX14: Cytochrome oxidase c assembly
Probab=21.73 E-value=1.3e+02 Score=20.74 Aligned_cols=21 Identities=33% Similarity=0.686 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHHHHHHhhhH
Q 041340 162 TPALFGGGLLGYVMYDVTHYY 182 (236)
Q Consensus 162 a~~~~~g~l~gyl~Yd~~Hy~ 182 (236)
+..+++|.+++|-.|+..++.
T Consensus 23 g~T~~~g~~~~~~~y~~~~~~ 43 (59)
T PF14880_consen 23 GFTVYGGGLTVYTVYSYFKYN 43 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 356788888999988876655
No 43
>cd03505 Delta9-FADS-like The Delta9 Fatty Acid Desaturase (Delta9-FADS)-like CD includes the delta-9 and delta-11 acyl CoA desaturases found in various eukaryotes including vertebrates, insects, higher plants, and fungi. The delta-9 acyl-lipid desaturases are found in a wide range of bacteria. These enzymes play essential roles in fatty acid metabolism and the regulation of cell membrane fluidity. Acyl-CoA desaturases are the enzymes involved in the CoA-bound desaturation of fatty acids. Mammalian stearoyl-CoA delta-9 desaturase is a key enzyme in the biosynthesis of monounsaturated fatty acids, and in yeast, the delta-9 acyl-CoA desaturase (OLE1) reaction accounts for all de nova unsaturated fatty acid production in Saccharomyces cerevisiae. These non-heme, iron-containing, ER membrane-bound enzymes are part of a three-component enzyme system involving cytochrome b5, cytochrome b5 reductase, and the delta-9 fatty acid desaturase. This complex catalyzes the NADH- and oxygen-dependent i
Probab=20.31 E-value=5.3e+02 Score=21.79 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=13.9
Q ss_pred HHHhcccCCCCCCCcccc
Q 041340 198 KYHLNHHFRIQNKGFGIT 215 (236)
Q Consensus 198 ~~H~~HH~~~~~~nfGvt 215 (236)
..|..||.--.+.+.|+.
T Consensus 137 g~HNnHHafP~~ar~g~~ 154 (178)
T cd03505 137 GWHNNHHAFPGDARNGLK 154 (178)
T ss_pred cccccccCCcchhhhCCc
Confidence 599999988677777743
No 44
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=20.04 E-value=1.3e+02 Score=18.14 Aligned_cols=14 Identities=36% Similarity=0.543 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHhh
Q 041340 167 GGGLLGYVMYDVTH 180 (236)
Q Consensus 167 ~g~l~gyl~Yd~~H 180 (236)
+-.++||+.|..++
T Consensus 12 v~lLlgYLvyALi~ 25 (29)
T PRK14748 12 VFLLLGYLVYALIN 25 (29)
T ss_pred HHHHHHHHHHHHhC
Confidence 34577888887654
Done!