Query 041340
Match_columns 236
No_of_seqs 200 out of 766
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 10:04:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041340.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041340hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pi7_A VPU protein, U ORF prot 20.3 97 0.0033 18.7 3.0 18 84-101 11-30 (36)
2 3arc_E Cytochrome B559 subunit 15.3 1.2E+02 0.004 21.6 2.8 31 45-75 7-37 (83)
3 2lfw_B NEPR anti sigma factor; 13.4 68 0.0023 21.8 1.1 29 17-51 26-55 (62)
4 2k3u_B C5AR(P7-28S) peptide, c 11.5 72 0.0025 17.5 0.6 12 4-15 10-21 (26)
5 2hly_A AGR_C_4178P, hypothetic 10.2 62 0.0021 27.0 0.1 34 2-48 92-125 (207)
6 2vgp_C Inner centromere protei 10.2 99 0.0034 19.4 1.0 12 219-230 24-35 (43)
7 2xq2_A Sodium/glucose cotransp 8.4 5.3E+02 0.018 24.1 5.9 13 86-98 458-470 (593)
8 2bbd_A Coat protein; archaea, 7.1 96 0.0033 26.4 0.0 11 194-204 340-350 (350)
9 1q3l_A Heterochromatin protein 6.4 1.1E+02 0.0036 20.9 -0.1 20 196-215 1-20 (69)
10 3sei_A Caskin-1; SAM domain, p 6.3 1.5E+02 0.005 23.0 0.7 13 192-204 137-149 (149)
No 1
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=20.27 E-value=97 Score=18.69 Aligned_cols=18 Identities=22% Similarity=0.715 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHH--HHHHH
Q 041340 84 VALMVLFGIFVWT--LLEYT 101 (236)
Q Consensus 84 ~~~~~~~g~l~w~--~~EY~ 101 (236)
+.+++++++++|+ +.||-
T Consensus 11 livalIiaIVVWtiv~ieYr 30 (36)
T 1pi7_A 11 LVVAIIIAIVVWSIVIIEGR 30 (36)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 4466788899999 45764
No 2
>3arc_E Cytochrome B559 subunit alpha; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_E* 3kzi_E* 3bz1_E* 1s5l_E* 1w5c_E* 2axt_E* 3bz2_E* 3prq_E* 3prr_E* 3a0b_E* 3a0h_E*
Probab=15.33 E-value=1.2e+02 Score=21.64 Aligned_cols=31 Identities=19% Similarity=0.367 Sum_probs=23.9
Q ss_pred cchhhhhcCCccchhhHhHHHHHHHHHHHHh
Q 041340 45 SDFWEFLTLTVWWAIPVIWLPVVCWCISMSI 75 (236)
Q Consensus 45 ~~~lE~~t~t~~~~~p~~w~p~~~~~~~~~~ 75 (236)
-+|.|.+|..++|++=.+=+|......|.-.
T Consensus 7 RpF~dIitsiRYWvIHsITIPslFiaGwLFV 37 (83)
T 3arc_E 7 RPFSDIITSVRYWVIHSITIPALFIAGWLFV 37 (83)
T ss_dssp CCHHHHTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHhheeeeEEEEeeccchHHHhhhhhh
Confidence 4788899999999999888887665555433
No 3
>2lfw_B NEPR anti sigma factor; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=13.39 E-value=68 Score=21.81 Aligned_cols=29 Identities=21% Similarity=0.396 Sum_probs=21.1
Q ss_pred Hhhh-hcchhHHhHhhcCCCCCCCCCCCCcchhhhh
Q 041340 17 FQVG-HLGEAYQEWVHQPIVSKEGPRFFESDFWEFL 51 (236)
Q Consensus 17 ~qv~-~~~~~y~~~v~~p~~~~~~~rlF~~~~lE~~ 51 (236)
.||| +|+..|++-|.+|+ +-|+.+ +||.|
T Consensus 26 ~~Ig~~LR~~Yd~vv~E~V----PDrFld--LL~qL 55 (62)
T 2lfw_B 26 RDMGAALRSAYQKTIEEQV----PDEMLD--LLNKL 55 (62)
T ss_dssp TTHHHHHHHHHHTTTSSCC----CCTTGG--GSTTT
T ss_pred HHHHHHHHHHHHHHhccCC----CHHHHH--HHHHH
Confidence 4674 68999999999998 445543 66654
No 4
>2k3u_B C5AR(P7-28S) peptide, chemotaxis inhibitory protein; chemotaxis inhibitory protein (chips), sulfated tyrosine; HET: TYS; NMR {Staphylococcus aureus subsp}
Probab=11.47 E-value=72 Score=17.48 Aligned_cols=12 Identities=42% Similarity=0.656 Sum_probs=9.2
Q ss_pred cccccccCCChh
Q 041340 4 AQEFTVDLNKPL 15 (236)
Q Consensus 4 ~~~~~~d~~kpl 15 (236)
.+|+.+|+|.|+
T Consensus 10 ddkdtldlntpv 21 (26)
T 2k3u_B 10 DDKDTLDLNTPV 21 (26)
T ss_dssp CSSSCCBTTCCC
T ss_pred CCccccccCCcc
Confidence 357889998885
No 5
>2hly_A AGR_C_4178P, hypothetical protein ATU2299; ATC2257, MCSG, structural genomics, PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens str} SCOP: d.3.1.19
Probab=10.20 E-value=62 Score=27.00 Aligned_cols=34 Identities=15% Similarity=0.211 Sum_probs=24.5
Q ss_pred cccccccccCCChhHHhhhhcchhHHhHhhcCCCCCCCCCCCCcchh
Q 041340 2 VVAQEFTVDLNKPLVFQVGHLGEAYQEWVHQPIVSKEGPRFFESDFW 48 (236)
Q Consensus 2 ~~~~~~~~d~~kpl~~qv~~~~~~y~~~v~~p~~~~~~~rlF~~~~l 48 (236)
++++...||+=.|+++| .+..-.-+.|||+.++=
T Consensus 92 Ve~Dg~~IDFMAP~f~e-------------~~~~~~ip~KMfQr~L~ 125 (207)
T 2hly_A 92 VEADGWAIDFMAPAFSE-------------GTDALAVPAKMFQRPLS 125 (207)
T ss_dssp EEETTEEEETTGGGTTT-------------TCGGGCCCCCBEEEEGG
T ss_pred EEECCEEeeeecccccc-------------CCCCCCCChHHhcchhh
Confidence 56788999999999999 22222236689997763
No 6
>2vgp_C Inner centromere protein A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD6; 1.7A {Xenopus laevis} PDB: 2bfy_C* 2bfx_C* 2vrx_C* 2vgo_C* 3ztx_C*
Probab=10.18 E-value=99 Score=19.37 Aligned_cols=12 Identities=42% Similarity=0.783 Sum_probs=8.9
Q ss_pred hhhhcCCCCCCc
Q 041340 219 WDRVFGTLPQTK 230 (236)
Q Consensus 219 WD~lFGT~~~~~ 230 (236)
-|.+||+..+++
T Consensus 24 ~d~iFG~I~pp~ 35 (43)
T 2vgp_C 24 VDRMYGTIDSPK 35 (43)
T ss_dssp HHHHTTTSCCCC
T ss_pred HHHHcCCCCCcC
Confidence 478899877654
No 7
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=8.39 E-value=5.3e+02 Score=24.06 Aligned_cols=13 Identities=23% Similarity=0.105 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHH
Q 041340 86 LMVLFGIFVWTLL 98 (236)
Q Consensus 86 ~~~~~g~l~w~~~ 98 (236)
...+.|++++-..
T Consensus 458 ~g~i~G~~~~~~~ 470 (593)
T 2xq2_A 458 IGVVASIPFALFL 470 (593)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3345555554444
No 8
>2bbd_A Coat protein; archaea, hyperthermophIle, evolution, crystal, viral; 2.04A {Sulfolobus turreted icosahedral virus}
Probab=7.10 E-value=96 Score=26.43 Aligned_cols=11 Identities=36% Similarity=0.812 Sum_probs=0.0
Q ss_pred hhhhHHHhccc
Q 041340 194 KNLKKYHLNHH 204 (236)
Q Consensus 194 ~~l~~~H~~HH 204 (236)
|++||+|..||
T Consensus 340 ~~ikrhhhhhh 350 (350)
T 2bbd_A 340 RRIKRHHHHHH 350 (350)
T ss_dssp -----------
T ss_pred hhhhhccccCC
Confidence 57788888777
No 9
>1q3l_A Heterochromatin protein 1; chromodomain, HP1, chromatin, methyllysine, monomethyllysine, structural protein; HET: MLZ; 1.64A {Drosophila melanogaster} SCOP: b.34.13.2 PDB: 1kne_A* 1kna_A*
Probab=6.40 E-value=1.1e+02 Score=20.92 Aligned_cols=20 Identities=25% Similarity=0.522 Sum_probs=2.5
Q ss_pred hhHHHhcccCCCCCCCcccc
Q 041340 196 LKKYHLNHHFRIQNKGFGIT 215 (236)
Q Consensus 196 l~~~H~~HH~~~~~~nfGvt 215 (236)
|+.+|..||....+.-|-|-
T Consensus 1 ~~~~~~~~~~~~~~~ey~VE 20 (69)
T 1q3l_A 1 MKKHHHHHHAEEEEEEYAVE 20 (69)
T ss_dssp ---------------CEEEE
T ss_pred CCccccccccccCCCcEEEE
Confidence 46788888877655556443
No 10
>3sei_A Caskin-1; SAM domain, protein-protein interaction, signaling protein; 2.40A {Homo sapiens} PDB: 3sen_A
Probab=6.35 E-value=1.5e+02 Score=22.97 Aligned_cols=13 Identities=31% Similarity=0.539 Sum_probs=8.8
Q ss_pred hhhhhhHHHhccc
Q 041340 192 VPKNLKKYHLNHH 204 (236)
Q Consensus 192 ~~~~l~~~H~~HH 204 (236)
-++.++|+|..||
T Consensus 137 ~l~~~~~~~~~~~ 149 (149)
T 3sei_A 137 KLAELRRHHHHHH 149 (149)
T ss_dssp HHHHHHHHTTCCC
T ss_pred HHHHHHHhhccCC
Confidence 3566778777766
Done!