Query 041340
Match_columns 236
No_of_seqs 200 out of 766
Neff 6.2
Searched_HMMs 13730
Date Mon Mar 25 10:04:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041340.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041340hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fftb2 f.17.2.1 (B:27-117) Cy 47.1 12 0.00084 25.3 4.3 20 39-62 53-72 (91)
2 d2axte1 f.23.38.1 (E:3-84) Cyt 13.0 64 0.0046 21.2 2.6 28 45-72 6-33 (82)
3 d1ppji_ d.184.1.3 (I:) Ubiquin 6.7 48 0.0035 19.7 -0.0 17 4-20 7-23 (47)
4 d1ppjg_ f.23.13.1 (G:) Ubiquin 6.6 1.7E+02 0.012 18.8 2.8 15 165-179 48-62 (75)
5 d2fyui1 d.184.1.3 (I:1-57) Ubi 6.5 55 0.004 20.2 0.2 16 3-18 37-52 (57)
6 d1yzma1 a.2.19.1 (A:456-501) F 6.0 79 0.0057 18.7 0.7 18 13-31 2-19 (46)
7 d2bw0a1 b.46.1.1 (A:204-307) 1 5.5 96 0.007 20.0 1.0 18 3-21 2-19 (104)
8 d1wb9a4 d.75.2.1 (A:2-116) DNA 5.2 1.1E+02 0.0079 20.9 1.2 16 12-27 9-24 (115)
9 d1f0la2 d.166.1.1 (A:1-187) Di 4.8 98 0.0071 22.3 0.7 18 4-21 103-120 (187)
10 d3dtub2 f.17.2.1 (B:30-129) Ba 4.8 3.9E+02 0.028 17.0 4.0 17 89-105 38-54 (100)
No 1
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=47.14 E-value=12 Score=25.31 Aligned_cols=20 Identities=25% Similarity=0.665 Sum_probs=16.8
Q ss_pred CCCCCCcchhhhhcCCccchhhHh
Q 041340 39 GPRFFESDFWEFLTLTVWWAIPVI 62 (236)
Q Consensus 39 ~~rlF~~~~lE~~t~t~~~~~p~~ 62 (236)
+++.-+|..+|.. |+++|++
T Consensus 53 ~~~~~~n~~lEi~----WtiIP~i 72 (91)
T d1fftb2 53 SPNWSHSNKVEAV----VWTVPIL 72 (91)
T ss_dssp CCCCCCCSHHHHH----TTHHHHH
T ss_pred CCcccCCceehhh----HHHHHHH
Confidence 5678899999986 8888887
No 2
>d2axte1 f.23.38.1 (E:3-84) Cytochrome b559 subunit alpha, PsbE {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=13.02 E-value=64 Score=21.25 Aligned_cols=28 Identities=21% Similarity=0.369 Sum_probs=21.9
Q ss_pred cchhhhhcCCccchhhHhHHHHHHHHHH
Q 041340 45 SDFWEFLTLTVWWAIPVIWLPVVCWCIS 72 (236)
Q Consensus 45 ~~~lE~~t~t~~~~~p~~w~p~~~~~~~ 72 (236)
-+|.|.+|..++|++=.+=+|......|
T Consensus 6 RpF~dIitsiRYWvIHsiTIPslFiaGw 33 (82)
T d2axte1 6 RPFSDIITSVRYWVIHSITIPALFIAGW 33 (82)
T ss_dssp SCHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHhhhheeeEEEEEeecccHHHHhhh
Confidence 3688889999999998887776555444
No 3
>d1ppji_ d.184.1.3 (I:) Ubiquinol-cytochrome c reductase 8 kDa protein {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.65 E-value=48 Score=19.68 Aligned_cols=17 Identities=12% Similarity=0.229 Sum_probs=8.5
Q ss_pred cccccccCCChhHHhhh
Q 041340 4 AQEFTVDLNKPLVFQVG 20 (236)
Q Consensus 4 ~~~~~~d~~kpl~~qv~ 20 (236)
.++..+|..||++.|=.
T Consensus 7 ~e~~vld~krpfLcrES 23 (47)
T d1ppji_ 7 SESPVLDLKLSVLCRES 23 (47)
T ss_dssp SCCCCC-----CCSHHH
T ss_pred CCCceEecccceeehhh
Confidence 45678899999998853
No 4
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.58 E-value=1.7e+02 Score=18.78 Aligned_cols=15 Identities=13% Similarity=0.042 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHh
Q 041340 165 LFGGGLLGYVMYDVT 179 (236)
Q Consensus 165 ~~~g~l~gyl~Yd~~ 179 (236)
+...++++|++|++.
T Consensus 48 v~PPfi~~Y~iy~W~ 62 (75)
T d1ppjg_ 48 VAPPFVAFYLVYTWG 62 (75)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred EcCHHHHHHHHHHHH
Confidence 345578899999874
No 5
>d2fyui1 d.184.1.3 (I:1-57) Ubiquinol-cytochrome c reductase 8 kDa protein {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.54 E-value=55 Score=20.16 Aligned_cols=16 Identities=13% Similarity=0.374 Sum_probs=11.7
Q ss_pred ccccccccCCChhHHh
Q 041340 3 VAQEFTVDLNKPLVFQ 18 (236)
Q Consensus 3 ~~~~~~~d~~kpl~~q 18 (236)
..++..+|..||.+.+
T Consensus 37 ~~e~~vlD~KrpfLcR 52 (57)
T d2fyui1 37 TSESPVLDLKRSVLCR 52 (57)
T ss_dssp CCCCCCSSSCCCCSCS
T ss_pred CCCCceeccCCceeeh
Confidence 3456678999998764
No 6
>d1yzma1 a.2.19.1 (A:456-501) FYVE finger-containing Rab5 effector protein rabenosyn-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.99 E-value=79 Score=18.65 Aligned_cols=18 Identities=17% Similarity=0.372 Sum_probs=12.1
Q ss_pred ChhHHhhhhcchhHHhHhh
Q 041340 13 KPLVFQVGHLGEAYQEWVH 31 (236)
Q Consensus 13 kpl~~qv~~~~~~y~~~v~ 31 (236)
.||+.|+.+++. |..+-.
T Consensus 2 nPllqQi~~ik~-yI~QAk 19 (46)
T d1yzma1 2 SPLLQQIHNITS-FIRQAK 19 (46)
T ss_dssp HHHHHHHHHHHH-HHHHHH
T ss_pred ChHHHHHHHHHH-HHHHHH
Confidence 489999988753 444433
No 7
>d2bw0a1 b.46.1.1 (A:204-307) 10-formyltetrahydrofolate dehydrogenase domain 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.48 E-value=96 Score=20.02 Aligned_cols=18 Identities=6% Similarity=0.226 Sum_probs=12.5
Q ss_pred ccccccccCCChhHHhhhh
Q 041340 3 VAQEFTVDLNKPLVFQVGH 21 (236)
Q Consensus 3 ~~~~~~~d~~kpl~~qv~~ 21 (236)
-+++..|||++| -.||-+
T Consensus 2 KKed~~IdW~~~-a~~I~~ 19 (104)
T d2bw0a1 2 KKETAKINWDQP-AEAIHN 19 (104)
T ss_dssp CGGGGBCCCSSC-HHHHHH
T ss_pred CccccEEcCCCC-HHHHHH
Confidence 467789999998 444533
No 8
>d1wb9a4 d.75.2.1 (A:2-116) DNA repair protein MutS, domain I {Escherichia coli [TaxId: 562]}
Probab=5.18 E-value=1.1e+02 Score=20.94 Aligned_cols=16 Identities=19% Similarity=0.185 Sum_probs=12.7
Q ss_pred CChhHHhhhhcchhHH
Q 041340 12 NKPLVFQVGHLGEAYQ 27 (236)
Q Consensus 12 ~kpl~~qv~~~~~~y~ 27 (236)
--||..|-..+++.|-
T Consensus 9 ~TP~~~Qy~eiK~~~p 24 (115)
T d1wb9a4 9 HTPMMQQYLRLKAQHP 24 (115)
T ss_dssp SCHHHHHHHHHHHHST
T ss_pred CCHHHHHHHHHHHHCC
Confidence 3799999988887763
No 9
>d1f0la2 d.166.1.1 (A:1-187) Diphtheria toxin, N-terminal domain {Corynebacterium diphtheriae [TaxId: 1717]}
Probab=4.84 E-value=98 Score=22.27 Aligned_cols=18 Identities=39% Similarity=0.654 Sum_probs=14.6
Q ss_pred cccccccCCChhHHhhhh
Q 041340 4 AQEFTVDLNKPLVFQVGH 21 (236)
Q Consensus 4 ~~~~~~d~~kpl~~qv~~ 21 (236)
+++-.+.++.||+-|||.
T Consensus 103 kkelglslteplmeqvgt 120 (187)
T d1f0la2 103 KKELGLSLTEPLMEQVGT 120 (187)
T ss_dssp HHHTTCCTTSCHHHHHTS
T ss_pred HHHhccccchHHHHHhhH
Confidence 356678899999999974
No 10
>d3dtub2 f.17.2.1 (B:30-129) Bacterial aa3 type cytochrome c oxidase subunit II {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.78 E-value=3.9e+02 Score=17.05 Aligned_cols=17 Identities=41% Similarity=0.655 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHhh
Q 041340 89 LFGIFVWTLLEYTLHRF 105 (236)
Q Consensus 89 ~~g~l~w~~~EY~~HR~ 105 (236)
++++++.-.+-|.+-|+
T Consensus 38 ~I~~~V~~~l~~~~~~~ 54 (100)
T d3dtub2 38 AITIFVTLLILYAVWRF 54 (100)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 33444444445555554
Done!