Your job contains 1 sequence.
>041342
MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR
RITKLDQILLNGNNIAILVPGGSPDPE
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 041342
(87 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2156589 - symbol:SAD1 "SUPERSENSITIVE TO ABA A... 419 2.9e-39 1
ZFIN|ZDB-GENE-070822-23 - symbol:zgc:171959 "zgc:171959" ... 336 1.8e-30 1
UNIPROTKB|Q2HJH0 - symbol:LSM5 "U6 snRNA-associated Sm-li... 335 2.3e-30 1
UNIPROTKB|Q9Y4Y9 - symbol:LSM5 "U6 snRNA-associated Sm-li... 335 2.3e-30 1
MGI|MGI:1913623 - symbol:Lsm5 "LSM5 homolog, U6 small nuc... 335 2.3e-30 1
WB|WBGene00003079 - symbol:lsm-5 species:6239 "Caenorhabd... 327 1.6e-29 1
UNIPROTKB|O18694 - symbol:lsm-5 "Protein LSM-5" species:6... 327 1.6e-29 1
FB|FBgn0035675 - symbol:CG6610 species:7227 "Drosophila m... 304 4.5e-27 1
DICTYBASE|DDB_G0268716 - symbol:lsm5 "putative U6 small n... 287 2.9e-25 1
ASPGD|ASPL0000026389 - symbol:AN5679 species:162425 "Emer... 270 1.8e-23 1
UNIPROTKB|G4MRX5 - symbol:MGG_02462 "U6 snRNA-associated ... 265 6.1e-23 1
GENEDB_PFALCIPARUM|PF14_0411 - symbol:PF14_0411 "small nu... 264 7.8e-23 1
UNIPROTKB|Q8IL38 - symbol:PF14_0411 "Small nuclear ribonu... 264 7.8e-23 1
POMBASE|SPBC20F10.09 - symbol:lsm5 "U6 snRNP-associated p... 236 7.2e-20 1
SGD|S000000948 - symbol:LSM5 "Lsm (Like Sm) protein" spec... 182 3.8e-14 1
TAIR|locus:2118781 - symbol:AT4G30330 "AT4G30330" species... 115 4.8e-07 1
UNIPROTKB|G4MXF4 - symbol:MGG_10740 "Sm snRNP core protei... 113 7.8e-07 1
TAIR|locus:2053989 - symbol:AT2G18740 "AT2G18740" species... 112 1.0e-06 1
POMBASE|SPBC4B4.05 - symbol:smg1 "U4/U6 x U5 tri-snRNP co... 103 9.0e-06 1
UNIPROTKB|F1N150 - symbol:F1N150 "Uncharacterized protein... 101 1.5e-05 1
RGD|2318883 - symbol:LOC100362099 "small nuclear ribonucl... 100 1.9e-05 1
GENEDB_PFALCIPARUM|MAL13P1.253 - symbol:MAL13P1.253 "smal... 99 2.4e-05 1
UNIPROTKB|Q8IDJ7 - symbol:MAL13P1.253 "Small nuclear ribo... 99 2.4e-05 1
ZFIN|ZDB-GENE-040426-1112 - symbol:snrpe "small nuclear r... 99 2.4e-05 1
UNIPROTKB|P62303 - symbol:SNRPE "Small nuclear ribonucleo... 98 3.0e-05 1
UNIPROTKB|A4FUI2 - symbol:SNRPE "Small nuclear ribonucleo... 98 3.0e-05 1
UNIPROTKB|P62304 - symbol:SNRPE "Small nuclear ribonucleo... 98 3.0e-05 1
UNIPROTKB|A1XQR9 - symbol:SNRPE "Small nuclear ribonucleo... 98 3.0e-05 1
UNIPROTKB|I3LDW9 - symbol:SNRPE "Small nuclear ribonucleo... 98 3.0e-05 1
MGI|MGI:98346 - symbol:Snrpe "small nuclear ribonucleopro... 98 3.0e-05 1
POMBASE|SPBC11G11.06c - symbol:sme1 "Sm snRNP core protei... 98 3.0e-05 1
RGD|2321675 - symbol:Snrpe "small nuclear ribonucleoprote... 98 3.0e-05 1
FB|FBgn0262601 - symbol:SmB "Small ribonucleoprotein part... 100 3.5e-05 1
WB|WBGene00004920 - symbol:snr-7 species:6239 "Caenorhabd... 97 3.9e-05 1
POMBASE|SPCC285.12 - symbol:lsm7 "U6 snRNP-associated pro... 96 5.0e-05 1
RGD|2319339 - symbol:LOC100361838 "small nuclear ribonucl... 96 5.0e-05 1
FB|FBgn0261790 - symbol:SmE "Small ribonucleoprotein part... 95 6.3e-05 1
SGD|S000006434 - symbol:LSM3 "Lsm (Like Sm) protein" spec... 95 6.3e-05 1
ZFIN|ZDB-GENE-040912-105 - symbol:zgc:103688 "zgc:103688"... 95 6.3e-05 1
SGD|S000005091 - symbol:LSM7 "Lsm (Like Sm) protein" spec... 94 8.1e-05 1
TAIR|locus:2014922 - symbol:LSM3A "AT1G21190" species:370... 94 8.1e-05 1
WB|WBGene00004919 - symbol:snr-6 species:6239 "Caenorhabd... 94 8.1e-05 1
WB|WBGene00003077 - symbol:lsm-3 species:6239 "Caenorhabd... 94 8.1e-05 1
ASPGD|ASPL0000056132 - symbol:AN0767 species:162425 "Emer... 93 0.00010 1
ASPGD|ASPL0000001547 - symbol:AN10781 species:162425 "Eme... 93 0.00010 1
ASPGD|ASPL0000049189 - symbol:AN1495 species:162425 "Emer... 93 0.00010 1
ASPGD|ASPL0000007577 - symbol:AN6735 species:162425 "Emer... 93 0.00010 1
UNIPROTKB|F1P280 - symbol:LSM3 "Uncharacterized protein" ... 93 0.00010 1
UNIPROTKB|Q32PE9 - symbol:LSM3 "U6 snRNA-associated Sm-li... 93 0.00010 1
UNIPROTKB|P62310 - symbol:LSM3 "U6 snRNA-associated Sm-li... 93 0.00010 1
UNIPROTKB|F2Z5S4 - symbol:LSM3 "Uncharacterized protein" ... 93 0.00010 1
UNIPROTKB|G4NLE3 - symbol:MGG_02938 "Uncharacterized prot... 93 0.00010 1
MGI|MGI:1914928 - symbol:Lsm3 "LSM3 homolog, U6 small nuc... 93 0.00010 1
RGD|1305971 - symbol:Lsm3 "LSM3 homolog, U6 small nuclear... 93 0.00010 1
TAIR|locus:2036257 - symbol:LSM3B "AT1G76860" species:370... 93 0.00010 1
FB|FBgn0051184 - symbol:LSm3 species:7227 "Drosophila mel... 92 0.00013 1
UNIPROTKB|F1ME11 - symbol:LOC100296197 "Uncharacterized p... 92 0.00013 1
UNIPROTKB|J9P098 - symbol:LOC100855941 "Uncharacterized p... 92 0.00013 1
TAIR|locus:2087522 - symbol:LSM1B "SM-like 1B" species:37... 92 0.00013 1
DICTYBASE|DDB_G0288479 - symbol:lsm8 "putative U6 small n... 91 0.00017 1
DICTYBASE|DDB_G0277107 - symbol:lsm3 "putative U6 small n... 91 0.00017 1
GENEDB_PFALCIPARUM|PF08_0049 - symbol:PF08_0049 "ribonucl... 90 0.00021 1
UNIPROTKB|G4MSI0 - symbol:MGG_01450 "Sm snRNP core protei... 90 0.00021 1
SGD|S000003660 - symbol:LSM1 "Lsm (Like Sm) protein" spec... 91 0.00024 1
UNIPROTKB|E1BHK8 - symbol:SNRPE "Small nuclear ribonucleo... 89 0.00027 1
UNIPROTKB|Q3ZCE0 - symbol:NAA38 "N-alpha-acetyltransferas... 89 0.00027 1
UNIPROTKB|O95777 - symbol:NAA38 "N-alpha-acetyltransferas... 89 0.00027 1
UNIPROTKB|G4N3U5 - symbol:MGG_16841 "Uncharacterized prot... 89 0.00027 1
MGI|MGI:1923772 - symbol:Naa38 "N(alpha)-acetyltransferas... 89 0.00027 1
ASPGD|ASPL0000060673 - symbol:AN10007 species:162425 "Eme... 88 0.00035 1
DICTYBASE|DDB_G0282863 - symbol:snrpG "putative small nuc... 88 0.00035 1
POMBASE|SPAC2F3.17c - symbol:lsm6 "U6 snRNP-associated pr... 88 0.00035 1
UNIPROTKB|A6NHK2 - symbol:SNRPE "Small nuclear ribonucleo... 87 0.00045 1
WB|WBGene00003081 - symbol:lsm-7 species:6239 "Caenorhabd... 87 0.00045 1
UNIPROTKB|Q23543 - symbol:lsm-7 "Protein LSM-7" species:6... 87 0.00045 1
DICTYBASE|DDB_G0302414 - symbol:snrpE "small nuclear ribo... 86 0.00057 1
DICTYBASE|DDB_G0289499 - symbol:lsm7 "putative U6 small n... 86 0.00057 1
DICTYBASE|DDB_G0279837 - symbol:lsm1 "LSM (like-Sm) domai... 86 0.00057 1
UNIPROTKB|Q3ZBL0 - symbol:SNRPG "Small nuclear ribonucleo... 86 0.00057 1
UNIPROTKB|J9NSG1 - symbol:J9NSG1 "Uncharacterized protein... 86 0.00057 1
UNIPROTKB|P62308 - symbol:SNRPG "Small nuclear ribonucleo... 86 0.00057 1
UNIPROTKB|F2Z5V2 - symbol:LOC100525867 "Uncharacterized p... 86 0.00057 1
RGD|1584713 - symbol:Snrpg "small nuclear ribonucleoprote... 86 0.00057 1
WB|WBGene00003076 - symbol:lsm-1 species:6239 "Caenorhabd... 86 0.00057 1
SGD|S000004265 - symbol:SMD2 "Core Sm protein Sm D2" spec... 85 0.00072 1
SGD|S000005685 - symbol:SME1 "Core Sm protein Sm E" speci... 85 0.00072 1
TAIR|locus:2080777 - symbol:AT3G11500 "AT3G11500" species... 85 0.00072 1
CGD|CAL0004008 - symbol:orf19.7290 species:5476 "Candida ... 86 0.00085 1
DICTYBASE|DDB_G0285395 - symbol:snrpD2 "putative small nu... 84 0.00093 1
>TAIR|locus:2156589 [details] [associations]
symbol:SAD1 "SUPERSENSITIVE TO ABA AND DROUGHT 1"
species:3702 "Arabidopsis thaliana" [GO:0005634 "nucleus"
evidence=ISM;ISS] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009414 "response to water deprivation" evidence=IMP]
[GO:0009737 "response to abscisic acid stimulus" evidence=IMP]
INTERPRO:IPR001163 GO:GO:0009737 EMBL:CP002688 GO:GO:0009414
GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:AB012242
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 KO:K12624 OMA:CIGSRIW
UniGene:At.49146 UniGene:At.6838 HSSP:O29885 EMBL:AY034896
EMBL:BT025700 IPI:IPI00538376 RefSeq:NP_199698.1
ProteinModelPortal:Q9FKB0 SMR:Q9FKB0 STRING:Q9FKB0 PRIDE:Q9FKB0
EnsemblPlants:AT5G48870.1 GeneID:834945 KEGG:ath:AT5G48870
TAIR:At5g48870 InParanoid:Q9FKB0 PhylomeDB:Q9FKB0
ProtClustDB:CLSN2686781 Genevestigator:Q9FKB0 Uniprot:Q9FKB0
Length = 88
Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
Identities = 81/85 (95%), Positives = 84/85 (98%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
MA+NPSQLLPSELIDRCIGSKIWVIMKGDKELVG LKGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGR 60
Query: 61 RITKLDQILLNGNNIAILVPGGSPD 85
R+TKLDQILLNGNNIAILVPGGSP+
Sbjct: 61 RVTKLDQILLNGNNIAILVPGGSPE 85
>ZFIN|ZDB-GENE-070822-23 [details] [associations]
symbol:zgc:171959 "zgc:171959" species:7955 "Danio
rerio" [GO:0003674 "molecular_function" evidence=ND]
INTERPRO:IPR001163 ZFIN:ZDB-GENE-070822-23 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 GeneTree:ENSGT00390000001455 HOVERGEN:HBG107310
KO:K12624 OMA:CIGSRIW OrthoDB:EOG48D0WX HOGENOM:HOG000223547
EMBL:BX571950 EMBL:BC150414 IPI:IPI00609349 RefSeq:NP_001093908.1
UniGene:Dr.117231 STRING:A7E2L8 Ensembl:ENSDART00000105903
GeneID:563948 KEGG:dre:563948 NextBio:20885150 Uniprot:A7E2L8
Length = 91
Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 65/86 (75%), Positives = 75/86 (87%)
Query: 2 AHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRR 61
A NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRR
Sbjct: 6 ATNPSQLLPLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRR 65
Query: 62 ITKLDQILLNGNNIAILVPGGSPDPE 87
ITKLDQILLNGNNI +L+PGG PE
Sbjct: 66 ITKLDQILLNGNNITMLIPGGE-GPE 90
>UNIPROTKB|Q2HJH0 [details] [associations]
symbol:LSM5 "U6 snRNA-associated Sm-like protein LSm5"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
EMBL:BC105404 IPI:IPI00700036 RefSeq:NP_001040018.1
UniGene:Bt.43458 ProteinModelPortal:Q2HJH0 SMR:Q2HJH0 STRING:Q2HJH0
Ensembl:ENSBTAT00000003010 GeneID:615136 KEGG:bta:615136 CTD:23658
GeneTree:ENSGT00390000001455 HOVERGEN:HBG107310 InParanoid:Q2HJH0
KO:K12624 OMA:CIGSRIW OrthoDB:EOG48D0WX NextBio:20899463
Uniprot:Q2HJH0
Length = 91
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 65/84 (77%), Positives = 74/84 (88%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67
Query: 64 KLDQILLNGNNIAILVPGGSPDPE 87
KLDQILLNGNNI +LVPGG PE
Sbjct: 68 KLDQILLNGNNITMLVPGGE-GPE 90
>UNIPROTKB|Q9Y4Y9 [details] [associations]
symbol:LSM5 "U6 snRNA-associated Sm-like protein LSm5"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005634 "nucleus" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
EMBL:AJ238097 INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005634
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0043928 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 CTD:23658
HOVERGEN:HBG107310 KO:K12624 OMA:CIGSRIW OrthoDB:EOG48D0WX
EMBL:AF182291 EMBL:AC018641 EMBL:BC005938 EMBL:BF701546
IPI:IPI00220493 IPI:IPI00908769 RefSeq:NP_001124182.1
RefSeq:NP_001132971.1 RefSeq:NP_036454.1 UniGene:Hs.424908
ProteinModelPortal:Q9Y4Y9 SMR:Q9Y4Y9 DIP:DIP-31162N IntAct:Q9Y4Y9
STRING:Q9Y4Y9 PhosphoSite:Q9Y4Y9 DMDM:10720081 PaxDb:Q9Y4Y9
PRIDE:Q9Y4Y9 DNASU:23658 Ensembl:ENST00000409292
Ensembl:ENST00000409782 Ensembl:ENST00000409909
Ensembl:ENST00000409952 Ensembl:ENST00000410044
Ensembl:ENST00000450169 GeneID:23658 KEGG:hsa:23658 UCSC:uc003tct.2
GeneCards:GC07M032524 HGNC:HGNC:17162 HPA:HPA019054 MIM:607285
neXtProt:NX_Q9Y4Y9 PharmGKB:PA134881171 InParanoid:Q9Y4Y9
PhylomeDB:Q9Y4Y9 GenomeRNAi:23658 NextBio:46501 ArrayExpress:Q9Y4Y9
Bgee:Q9Y4Y9 CleanEx:HS_LSM5 Genevestigator:Q9Y4Y9
GermOnline:ENSG00000106355 Uniprot:Q9Y4Y9
Length = 91
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 65/84 (77%), Positives = 74/84 (88%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67
Query: 64 KLDQILLNGNNIAILVPGGSPDPE 87
KLDQILLNGNNI +LVPGG PE
Sbjct: 68 KLDQILLNGNNITMLVPGGE-GPE 90
>MGI|MGI:1913623 [details] [associations]
symbol:Lsm5 "LSM5 homolog, U6 small nuclear RNA associated
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006402 "mRNA catabolic process" evidence=ISO] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=ISO] MGI:MGI:1913623 INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 CTD:23658 GeneTree:ENSGT00390000001455
HOVERGEN:HBG107310 KO:K12624 OMA:CIGSRIW EMBL:AK009617
EMBL:AK011218 EMBL:BC048459 EMBL:BC061085 EMBL:BC132626
EMBL:BC132628 IPI:IPI00119813 RefSeq:NP_079796.1
RefSeq:XP_003946397.1 UniGene:Mm.25642 ProteinModelPortal:P62322
SMR:P62322 IntAct:P62322 PhosphoSite:P62322 PRIDE:P62322
Ensembl:ENSMUST00000170382 GeneID:100044729 GeneID:66373
KEGG:mmu:100044729 KEGG:mmu:66373 UCSC:uc009cbj.2 NextBio:458218
Bgee:P62322 Genevestigator:P62322 GermOnline:ENSMUSG00000054264
Uniprot:P62322
Length = 91
Score = 335 (123.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 65/84 (77%), Positives = 74/84 (88%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67
Query: 64 KLDQILLNGNNIAILVPGGSPDPE 87
KLDQILLNGNNI +LVPGG PE
Sbjct: 68 KLDQILLNGNNITMLVPGGE-GPE 90
>WB|WBGene00003079 [details] [associations]
symbol:lsm-5 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0006915 "apoptotic
process" evidence=IMP] INTERPRO:IPR001163 GO:GO:0009792
GO:GO:0006915 GO:GO:0000003 GO:GO:0042127 GO:GO:0040020
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:Z81071 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 HSSP:O26745 eggNOG:COG1958
GeneTree:ENSGT00390000001455 KO:K12624 OMA:CIGSRIW
HOGENOM:HOG000223547 PIR:T21508 RefSeq:NP_506870.1
ProteinModelPortal:O18694 SMR:O18694 IntAct:O18694 STRING:O18694
PaxDb:O18694 EnsemblMetazoa:F28F8.3.1 EnsemblMetazoa:F28F8.3.2
GeneID:180047 KEGG:cel:CELE_F28F8.3 UCSC:F28F8.3.1 CTD:180047
WormBase:F28F8.3 InParanoid:O18694 NextBio:907884 Uniprot:O18694
Length = 91
Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 64/84 (76%), Positives = 72/84 (85%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
NP+ LLP ELID+CIGSKIWVIMK DKE+VGTL GFD YVNMVLEDV EYE TA+G+R+T
Sbjct: 8 NPNTLLPLELIDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGKRMT 67
Query: 64 KLDQILLNGNNIAILVPGGSPDPE 87
KLD ILLNGN+I +LVPGG PE
Sbjct: 68 KLDTILLNGNHITMLVPGGE-GPE 90
>UNIPROTKB|O18694 [details] [associations]
symbol:lsm-5 "Protein LSM-5" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
INTERPRO:IPR001163 GO:GO:0009792 GO:GO:0006915 GO:GO:0000003
GO:GO:0042127 GO:GO:0040020 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:Z81071 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HSSP:O26745 eggNOG:COG1958 GeneTree:ENSGT00390000001455 KO:K12624
OMA:CIGSRIW HOGENOM:HOG000223547 PIR:T21508 RefSeq:NP_506870.1
ProteinModelPortal:O18694 SMR:O18694 IntAct:O18694 STRING:O18694
PaxDb:O18694 EnsemblMetazoa:F28F8.3.1 EnsemblMetazoa:F28F8.3.2
GeneID:180047 KEGG:cel:CELE_F28F8.3 UCSC:F28F8.3.1 CTD:180047
WormBase:F28F8.3 InParanoid:O18694 NextBio:907884 Uniprot:O18694
Length = 91
Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 64/84 (76%), Positives = 72/84 (85%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
NP+ LLP ELID+CIGSKIWVIMK DKE+VGTL GFD YVNMVLEDV EYE TA+G+R+T
Sbjct: 8 NPNTLLPLELIDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGKRMT 67
Query: 64 KLDQILLNGNNIAILVPGGSPDPE 87
KLD ILLNGN+I +LVPGG PE
Sbjct: 68 KLDTILLNGNHITMLVPGGE-GPE 90
>FB|FBgn0035675 [details] [associations]
symbol:CG6610 species:7227 "Drosophila melanogaster"
[GO:0005688 "U6 snRNP" evidence=NAS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=ISS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0005681 "spliceosomal
complex" evidence=ISS] INTERPRO:IPR001163 EMBL:AE014296
GO:GO:0005681 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HSSP:O26745 eggNOG:COG1958 GeneTree:ENSGT00390000001455 KO:K12624
OMA:CIGSRIW EMBL:AY113521 RefSeq:NP_648022.1 UniGene:Dm.14483
SMR:Q9VRT7 IntAct:Q9VRT7 MINT:MINT-768745 STRING:Q9VRT7
EnsemblMetazoa:FBtr0077048 EnsemblMetazoa:FBtr0332059
EnsemblMetazoa:FBtr0332060 GeneID:38693 KEGG:dme:Dmel_CG6610
UCSC:CG6610-RA FlyBase:FBgn0035675 InParanoid:Q9VRT7
OrthoDB:EOG43TXC6 GenomeRNAi:38693 NextBio:809911 Uniprot:Q9VRT7
Length = 91
Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
Identities = 58/79 (73%), Positives = 69/79 (87%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
N S L+P EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+L+DVTEYE T +GRRIT
Sbjct: 9 NISTLMPLELVDKCIGSRIHIIMKNDKEMVGTLLGFDDFVNMLLDDVTEYENTPDGRRIT 68
Query: 64 KLDQILLNGNNIAILVPGG 82
KLDQILLNGNNI +LVPGG
Sbjct: 69 KLDQILLNGNNITMLVPGG 87
>DICTYBASE|DDB_G0268716 [details] [associations]
symbol:lsm5 "putative U6 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] dictyBase:DDB_G0268716
INTERPRO:IPR001163 GenomeReviews:CM000150_GR GO:GO:0005730
EMBL:AAFI02000004 GO:GO:0003723 GO:GO:0006402 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0005732
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HSSP:Q5CXX3 KO:K12624 OMA:CIGSRIW RefSeq:XP_646895.1
ProteinModelPortal:Q55EX5 SMR:Q55EX5 STRING:Q55EX5
EnsemblProtists:DDB0233383 GeneID:8616580 KEGG:ddi:DDB_G0268716
ProtClustDB:CLSZ2431478 Uniprot:Q55EX5
Length = 97
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 53/77 (68%), Positives = 63/77 (81%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELI++CIGS+IW+ MK DKE VGTL GFD YVN+ L+DVTEYE T EG + KL
Sbjct: 14 SQLLPLELIEKCIGSRIWIAMKNDKEFVGTLLGFDAYVNIFLKDVTEYEYTPEGLKTVKL 73
Query: 66 DQILLNGNNIAILVPGG 82
D ILLNGN++ +LVPGG
Sbjct: 74 DNILLNGNHVCLLVPGG 90
>ASPGD|ASPL0000026389 [details] [associations]
symbol:AN5679 species:162425 "Emericella nidulans"
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005688 "U6 snRNP"
evidence=IEA] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=IEA] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] INTERPRO:IPR001163
GO:GO:0003676 EMBL:BN001305 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HOGENOM:HOG000223547 EnsemblFungi:CADANIAT00003386 Uniprot:C8VFR4
Length = 129
Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 53/77 (68%), Positives = 64/77 (83%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELID+C+GS+IW+IMK DKE GTL GFD YVNMVLEDVTE++ T G ++ KL
Sbjct: 49 SQLLPLELIDKCVGSRIWIIMKNDKEFSGTLLGFDDYVNMVLEDVTEFDYT--GAQV-KL 105
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGNNI +L+PGG
Sbjct: 106 PKILLNGNNICMLIPGG 122
>UNIPROTKB|G4MRX5 [details] [associations]
symbol:MGG_02462 "U6 snRNA-associated Sm-like protein LSm5"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163 EMBL:CM001231
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 KO:K12624 RefSeq:XP_003709256.1
ProteinModelPortal:G4MRX5 SMR:G4MRX5 EnsemblFungi:MGG_02462T0
GeneID:2681559 KEGG:mgr:MGG_02462 Uniprot:G4MRX5
Length = 82
Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 52/77 (67%), Positives = 63/77 (81%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
+QLLP ELID+C+GS+IWVIMKGDKE G L GFD YVNMVLEDVTE++ + G TK+
Sbjct: 3 TQLLPLELIDKCVGSRIWVIMKGDKEFSGLLVGFDDYVNMVLEDVTEFDYS--GNH-TKM 59
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGNNI +L+PGG
Sbjct: 60 SKILLNGNNICMLIPGG 76
>GENEDB_PFALCIPARUM|PF14_0411 [details] [associations]
symbol:PF14_0411 "small nuclear ribonuclear
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005732
"small nucleolar ribonucleoprotein complex" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0003676 EMBL:AE014187 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005732 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
KO:K12624 OMA:CIGSRIW ProtClustDB:CLSZ2431478 HOGENOM:HOG000223547
HSSP:Q8ZYG5 RefSeq:XP_001348585.1 ProteinModelPortal:Q8IL38
SMR:Q8IL38 EnsemblProtists:PF14_0411:mRNA GeneID:811993
KEGG:pfa:PF14_0411 EuPathDB:PlasmoDB:PF3D7_1443300 Uniprot:Q8IL38
Length = 101
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 48/76 (63%), Positives = 61/76 (80%)
Query: 9 LPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQI 68
LP L+D+CIGSKIW++MKGDKE+VG L GFD YVNMVLEDVTEY +++ K+ ++
Sbjct: 11 LPLALMDKCIGSKIWIMMKGDKEIVGKLVGFDEYVNMVLEDVTEYTYANNVKKVNKIKKL 70
Query: 69 LLNGNNIAILVPGGSP 84
LLNG NI I+VPGG+P
Sbjct: 71 LLNGLNITIMVPGGTP 86
>UNIPROTKB|Q8IL38 [details] [associations]
symbol:PF14_0411 "Small nuclear ribonucleoprotein,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0003674
"molecular_function" evidence=ND] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0003676
EMBL:AE014187 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005732
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 KO:K12624 OMA:CIGSRIW
ProtClustDB:CLSZ2431478 HOGENOM:HOG000223547 HSSP:Q8ZYG5
RefSeq:XP_001348585.1 ProteinModelPortal:Q8IL38 SMR:Q8IL38
EnsemblProtists:PF14_0411:mRNA GeneID:811993 KEGG:pfa:PF14_0411
EuPathDB:PlasmoDB:PF3D7_1443300 Uniprot:Q8IL38
Length = 101
Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
Identities = 48/76 (63%), Positives = 61/76 (80%)
Query: 9 LPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQI 68
LP L+D+CIGSKIW++MKGDKE+VG L GFD YVNMVLEDVTEY +++ K+ ++
Sbjct: 11 LPLALMDKCIGSKIWIMMKGDKEIVGKLVGFDEYVNMVLEDVTEYTYANNVKKVNKIKKL 70
Query: 69 LLNGNNIAILVPGGSP 84
LLNG NI I+VPGG+P
Sbjct: 71 LLNGLNITIMVPGGTP 86
>POMBASE|SPBC20F10.09 [details] [associations]
symbol:lsm5 "U6 snRNP-associated protein Lsm5
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0005688 "U6
snRNP" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006402 "mRNA catabolic process" evidence=ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISS] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISS] PomBase:SPBC20F10.09 INTERPRO:IPR001163
GO:GO:0005730 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0005681
GO:GO:0003723 GO:GO:0008033 GO:GO:0006402 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0006364 GO:GO:0046540 GO:GO:0045292
GO:GO:0005732 GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 KO:K12624 OMA:CIGSRIW PIR:T39880
RefSeq:NP_596373.1 PDB:3SWN PDB:4EMK PDBsum:3SWN PDBsum:4EMK
ProteinModelPortal:O42978 SMR:O42978 STRING:O42978
EnsemblFungi:SPBC20F10.09.1 GeneID:2540723 KEGG:spo:SPBC20F10.09
HOGENOM:HOG000223547 OrthoDB:EOG4FN7TK EvolutionaryTrace:O42978
NextBio:20801845 Uniprot:O42978
Length = 80
Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
Identities = 46/79 (58%), Positives = 61/79 (77%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT-KLD 66
+LP ELID+CIGS +WVIMK ++E GTL GFD YVN+VL+DVTEY+ T G +T K
Sbjct: 5 ILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYD-TVTG--VTEKHS 61
Query: 67 QILLNGNNIAILVPGGSPD 85
++LLNGN + +L+PGG P+
Sbjct: 62 EMLLNGNGMCMLIPGGKPE 80
>SGD|S000000948 [details] [associations]
symbol:LSM5 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IDA]
[GO:0005688 "U6 snRNP" evidence=IDA;TAS] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;IDA;IPI]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005732 "small
nucleolar ribonucleoprotein complex" evidence=IPI] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=TAS]
SGD:S000000948 INTERPRO:IPR001163 GO:GO:0005730 GO:GO:0003723
EMBL:BK006939 GO:GO:0008033 GO:GO:0000956 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:U18917 GO:GO:0006364
GO:GO:0046540 GO:GO:0005732 GO:GO:0005688 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
GeneTree:ENSGT00390000001455 KO:K12624 OMA:CIGSRIW
HOGENOM:HOG000223547 OrthoDB:EOG4FN7TK EMBL:AY557783 PIR:S50649
RefSeq:NP_011073.1 ProteinModelPortal:P40089 SMR:P40089
DIP:DIP-1417N IntAct:P40089 MINT:MINT-383516 STRING:P40089
PaxDb:P40089 EnsemblFungi:YER146W GeneID:856889 KEGG:sce:YER146W
CYGD:YER146w NextBio:983290 Genevestigator:P40089
GermOnline:YER146W Uniprot:P40089
Length = 93
Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 39/85 (45%), Positives = 57/85 (67%)
Query: 7 QLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR-RITKL 65
++LP E+ID+ I K+ ++++ ++E GTL GFD +VN++LED E+ I E R K+
Sbjct: 5 EILPLEVIDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEKV 64
Query: 66 DQ----ILLNGNNIAILVPGGSPDP 86
Q +LL+GNNIAILVPGG P
Sbjct: 65 MQHHGRMLLSGNNIAILVPGGKKTP 89
>TAIR|locus:2118781 [details] [associations]
symbol:AT4G30330 "AT4G30330" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005829 "cytosol"
evidence=RCA] [GO:0016925 "protein sumoylation" evidence=RCA]
InterPro:IPR027078 INTERPRO:IPR001163 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003676 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HSSP:O26745 eggNOG:COG1958 KO:K11097
PANTHER:PTHR11193 HOGENOM:HOG000223543 OMA:VQIWLYE EMBL:AY087756
EMBL:BT024534 EMBL:AK175112 EMBL:AK175313 EMBL:AK176788
IPI:IPI00542865 RefSeq:NP_567844.1 UniGene:At.31841
ProteinModelPortal:Q8LAK5 SMR:Q8LAK5 IntAct:Q8LAK5 STRING:Q8LAK5
PaxDb:Q8LAK5 PRIDE:Q8LAK5 EnsemblPlants:AT4G30330.1 GeneID:829156
KEGG:ath:AT4G30330 TAIR:At4g30330 InParanoid:Q8LAK5
PhylomeDB:Q8LAK5 ProtClustDB:CLSN2683057 Genevestigator:Q8LAK5
Uniprot:Q8LAK5
Length = 88
Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 28/77 (36%), Positives = 44/77 (57%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + SK IW+ + D + G + GFD Y+N+VL++ E I + R+ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKKKTRK--PL 70
Query: 66 DQILLNGNNIAILVPGG 82
+ILL G+NI +++ G
Sbjct: 71 GRILLKGDNITLMMNAG 87
>UNIPROTKB|G4MXF4 [details] [associations]
symbol:MGG_10740 "Sm snRNP core protein Smg1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] INTERPRO:IPR001163 EMBL:CM001232
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 KO:K11099 RefSeq:XP_003713291.1
ProteinModelPortal:G4MXF4 EnsemblFungi:MGG_10740T0 GeneID:2676245
KEGG:mgr:MGG_10740 Uniprot:G4MXF4
Length = 88
Score = 113 (44.8 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 20/69 (28%), Positives = 44/69 (63%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P + + + K++V + G +++VG ++G+DV++N+VLED E + +G K+ ++
Sbjct: 4 PQPELKKYLDKKVFVQLNGSRKVVGVVRGYDVFLNIVLEDAFEEK---DGGEKVKIGTVV 60
Query: 70 LNGNNIAIL 78
+ GN++ +L
Sbjct: 61 IRGNSVVML 69
>TAIR|locus:2053989 [details] [associations]
symbol:AT2G18740 "AT2G18740" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0005829
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003676 GO:GO:0030529
EMBL:AC005724 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 HSSP:O26745 KO:K11097
PANTHER:PTHR11193 HOGENOM:HOG000223543 OMA:PPINCIY
ProtClustDB:CLSN2683057 EMBL:AY086369 EMBL:BT005662 EMBL:AK118809
IPI:IPI00523358 PIR:A84568 RefSeq:NP_179464.1 UniGene:At.39949
ProteinModelPortal:Q9ZV45 SMR:Q9ZV45 IntAct:Q9ZV45 STRING:Q9ZV45
PRIDE:Q9ZV45 EnsemblPlants:AT2G18740.1 GeneID:816389
KEGG:ath:AT2G18740 TAIR:At2g18740 InParanoid:Q9ZV45
PhylomeDB:Q9ZV45 ArrayExpress:Q9ZV45 Genevestigator:Q9ZV45
Uniprot:Q9ZV45
Length = 88
Score = 112 (44.5 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 28/77 (36%), Positives = 43/77 (55%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + SK IW+ + D + G + GFD Y+N+VL++ E I R+ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKKNTRK--PL 70
Query: 66 DQILLNGNNIAILVPGG 82
+ILL G+NI +++ G
Sbjct: 71 GRILLKGDNITLMMNTG 87
>POMBASE|SPBC4B4.05 [details] [associations]
symbol:smg1 "U4/U6 x U5 tri-snRNP complex Sm snRNP core
protein Smg1" species:4896 "Schizosaccharomyces pombe" [GO:0000395
"mRNA 5'-splice site recognition" evidence=IC] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IC] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0045292 "mRNA cis splicing, via spliceosome" evidence=ISS]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=ISS]
PomBase:SPBC4B4.05 INTERPRO:IPR001163 GO:GO:0005829 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0005681 GO:GO:0003723
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 GO:GO:0005685
GO:GO:0000395 HOGENOM:HOG000223546 KO:K11099 OMA:DLFLNVV PIR:T40477
RefSeq:NP_596422.1 ProteinModelPortal:O74966 IntAct:O74966
STRING:O74966 EnsemblFungi:SPBC4B4.05.1 GeneID:2540855
KEGG:spo:SPBC4B4.05 OrthoDB:EOG4XWK7N NextBio:20801971
Uniprot:O74966
Length = 77
Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 16/65 (24%), Positives = 44/65 (67%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + +++V + G +++ G L+G+D+++N+VLED E ++ +G ++ K+ + + GN
Sbjct: 9 LKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKV--DGEKV-KIGSVAIRGN 65
Query: 74 NIAIL 78
++ ++
Sbjct: 66 SVIMI 70
>UNIPROTKB|F1N150 [details] [associations]
symbol:F1N150 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
InterPro:IPR027078 INTERPRO:IPR001163 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
PANTHER:PTHR11193 GeneTree:ENSGT00390000012818 EMBL:DAAA02057271
IPI:IPI00826986 Ensembl:ENSBTAT00000011044 OMA:IFRCLQN
Uniprot:F1N150
Length = 92
Score = 101 (40.6 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 24/76 (31%), Positives = 43/76 (56%)
Query: 7 QLLPSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRI 62
Q+ P LI RC+ ++ +W+ + + G GFD Y+N+VL+D + + R+
Sbjct: 14 QVQPINLIFRCLQNRSRIQVWLYEQVNMWTEGCTIGFDEYMNLVLDDAEDIHSKTKSRK- 72
Query: 63 TKLDQILLNGNNIAIL 78
+L +I+L G+NI +L
Sbjct: 73 -QLGRIMLKGDNITLL 87
>RGD|2318883 [details] [associations]
symbol:LOC100362099 "small nuclear ribonucleoprotein polypeptide
E-like" species:10116 "Rattus norvegicus" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] InterPro:IPR027078 RGD:2318883
INTERPRO:IPR001163 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 OrthoDB:EOG4DBTGC
PANTHER:PTHR11193 GeneTree:ENSGT00390000012818 OMA:PPINCIY
IPI:IPI00368169 RefSeq:XP_002728814.1 RefSeq:XP_003753347.1
Ensembl:ENSRNOT00000040164 GeneID:100362099 KEGG:rno:100362099
UCSC:RGD:2318883 Uniprot:D4A8M5
Length = 92
Score = 100 (40.3 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 19/58 (32%), Positives = 37/58 (63%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
++W+ + + ++ G + GFD Y+N+VL+D E + R+ +L +I+L G+NI +L
Sbjct: 32 QVWLYEQVNMQIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITLL 87
>GENEDB_PFALCIPARUM|MAL13P1.253 [details] [associations]
symbol:MAL13P1.253 "small nuclear
ribonucleoprotein, putative" species:5833 "Plasmodium falciparum"
[GO:0005732 "small nucleolar ribonucleoprotein complex"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0003676 GO:GO:0006396
InterPro:IPR010920 SUPFAM:SSF50182 EMBL:AL844509 GO:GO:0005732
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 KO:K11097
PANTHER:PTHR11193 HOGENOM:HOG000223543 OMA:VQIWLYE
RefSeq:XP_001350215.1 ProteinModelPortal:Q8IDJ7
EnsemblProtists:MAL13P1.253:mRNA GeneID:813814 KEGG:pfa:MAL13P1.253
EuPathDB:PlasmoDB:PF3D7_1350200 ProtClustDB:PTZ00138 Uniprot:Q8IDJ7
Length = 93
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILV 79
+IW+ K D + G + GFD Y+NMVL+ E + ++ +L +ILL G+ I +++
Sbjct: 30 QIWLYDKPDMRIEGIILGFDEYMNMVLDQTKEISVKKNTKK--ELGKILLKGDTITLIM 86
>UNIPROTKB|Q8IDJ7 [details] [associations]
symbol:MAL13P1.253 "Small nuclear ribonucleoprotein,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0005732
"small nucleolar ribonucleoprotein complex" evidence=ISS]
[GO:0006396 "RNA processing" evidence=ISS] InterPro:IPR027078
INTERPRO:IPR001163 GO:GO:0003676 GO:GO:0006396 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AL844509 GO:GO:0005732 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 KO:K11097 PANTHER:PTHR11193
HOGENOM:HOG000223543 OMA:VQIWLYE RefSeq:XP_001350215.1
ProteinModelPortal:Q8IDJ7 EnsemblProtists:MAL13P1.253:mRNA
GeneID:813814 KEGG:pfa:MAL13P1.253 EuPathDB:PlasmoDB:PF3D7_1350200
ProtClustDB:PTZ00138 Uniprot:Q8IDJ7
Length = 93
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILV 79
+IW+ K D + G + GFD Y+NMVL+ E + ++ +L +ILL G+ I +++
Sbjct: 30 QIWLYDKPDMRIEGIILGFDEYMNMVLDQTKEISVKKNTKK--ELGKILLKGDTITLIM 86
>ZFIN|ZDB-GENE-040426-1112 [details] [associations]
symbol:snrpe "small nuclear ribonucleoprotein
polypeptide E" species:7955 "Danio rerio" [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR027078
INTERPRO:IPR001163 ZFIN:ZDB-GENE-040426-1112 GO:GO:0005634
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0030529
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 KO:K11097 CTD:6635 HOVERGEN:HBG003229
OrthoDB:EOG4DBTGC PANTHER:PTHR11193 GeneTree:ENSGT00390000012818
HOGENOM:HOG000223543 OMA:VQIWLYE EMBL:BC049062 IPI:IPI00507764
RefSeq:NP_957298.1 UniGene:Dr.117027 ProteinModelPortal:Q7ZUG0
STRING:Q7ZUG0 PRIDE:Q7ZUG0 Ensembl:ENSDART00000050296 GeneID:393979
KEGG:dre:393979 InParanoid:Q7ZUG0 NextBio:20814949 Bgee:Q7ZUG0
Uniprot:Q7ZUG0
Length = 92
Score = 99 (39.9 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 23/73 (31%), Positives = 42/73 (57%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + + G + GFD Y+N+VL+D E + + R+ L
Sbjct: 17 PINLIFRYLQNRSRISVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKTKNRK--PL 74
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI +L
Sbjct: 75 GRIMLKGDNITLL 87
>UNIPROTKB|P62303 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9031 "Gallus gallus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005683 "U7 snRNP" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K11097 CTD:6635 HOVERGEN:HBG003229 OrthoDB:EOG4DBTGC
PANTHER:PTHR11193 GeneTree:ENSGT00390000012818 OMA:VQIWLYE
EMBL:X65702 EMBL:L19064 IPI:IPI00587414 RefSeq:NP_990581.1
UniGene:Gga.23395 ProteinModelPortal:P62303 SMR:P62303
MINT:MINT-124835 STRING:P62303 PRIDE:P62303
Ensembl:ENSGALT00000000190 GeneID:396180 KEGG:gga:396180
InParanoid:P62303 NextBio:20816234 Uniprot:P62303
Length = 92
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 19/58 (32%), Positives = 36/58 (62%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
++W+ + + + G + GFD Y+N+VL+D E + R+ +L +I+L G+NI +L
Sbjct: 32 QVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITLL 87
>UNIPROTKB|A4FUI2 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9913 "Bos taurus" [GO:0005683 "U7 snRNP" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0006397 GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 KO:K11097 EMBL:BC114915
IPI:IPI00845188 RefSeq:NP_001076928.1 UniGene:Bt.36560
ProteinModelPortal:A4FUI2 SMR:A4FUI2 STRING:A4FUI2 PRIDE:A4FUI2
GeneID:531493 KEGG:bta:531493 CTD:6635 HOVERGEN:HBG003229
InParanoid:A4FUI2 OrthoDB:EOG4DBTGC NextBio:20875471
PANTHER:PTHR11193 Uniprot:A4FUI2
Length = 92
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 19/58 (32%), Positives = 36/58 (62%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
++W+ + + + G + GFD Y+N+VL+D E + R+ +L +I+L G+NI +L
Sbjct: 32 QVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITLL 87
>UNIPROTKB|P62304 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=NAS]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0030532 "small
nuclear ribonucleoprotein complex" evidence=NAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IDA] [GO:0005683 "U7 snRNP" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;TAS]
[GO:0000387 "spliceosomal snRNP assembly" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=TAS] [GO:0006369 "termination of RNA polymerase II
transcription" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0008334 "histone mRNA metabolic process"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0034660 "ncRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR027078
INTERPRO:IPR001163 GO:GO:0005829 GO:GO:0005654 Reactome:REACT_1675
EMBL:CH471067 GO:GO:0003723 GO:GO:0000387 GO:GO:0034660
GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
Reactome:REACT_1788 GO:GO:0000245 GO:GO:0006369 Reactome:REACT_78
GO:GO:0005689 PDB:3S6N PDBsum:3S6N Pfam:PF01423 GO:GO:0008334
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K11097 PDB:2Y9A PDB:2Y9B PDB:2Y9C PDB:2Y9D PDB:3CW1 PDB:3PGW
PDBsum:2Y9A PDBsum:2Y9B PDBsum:2Y9C PDBsum:2Y9D PDBsum:3CW1
PDBsum:3PGW CTD:6635 HOVERGEN:HBG003229 OrthoDB:EOG4DBTGC
PANTHER:PTHR11193 OMA:VQIWLYE EMBL:M37716 EMBL:M15919 EMBL:X12466
EMBL:AK312130 EMBL:BC002639 EMBL:BC090951 EMBL:M21258 EMBL:M21253
IPI:IPI00029266 PIR:A32127 RefSeq:NP_003085.1 UniGene:Hs.334612
UniGene:Hs.654418 ProteinModelPortal:P62304 SMR:P62304
DIP:DIP-31220N IntAct:P62304 MINT:MINT-225773 STRING:P62304
PhosphoSite:P62304 DMDM:61237380 PaxDb:P62304 PRIDE:P62304
DNASU:6635 Ensembl:ENST00000414487 GeneID:6635 KEGG:hsa:6635
UCSC:uc001hai.3 GeneCards:GC01P203834 HGNC:HGNC:11161 MIM:128260
neXtProt:NX_P62304 PharmGKB:PA36002 InParanoid:P62304 ChiTaRS:SNRPE
EvolutionaryTrace:P62304 GenomeRNAi:6635 NextBio:25849
ArrayExpress:P62304 Bgee:P62304 CleanEx:HS_SNRPE
Genevestigator:P62304 GermOnline:ENSG00000182004 Uniprot:P62304
Length = 92
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 19/58 (32%), Positives = 36/58 (62%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
++W+ + + + G + GFD Y+N+VL+D E + R+ +L +I+L G+NI +L
Sbjct: 32 QVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITLL 87
>UNIPROTKB|A1XQR9 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9823 "Sus scrofa" [GO:0005683 "U7 snRNP" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0006397 GO:GO:0005681 GO:GO:0003723 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649
SMART:SM00651 KO:K11097 HOVERGEN:HBG003229 PANTHER:PTHR11193
EMBL:DQ629140 EMBL:DQ629141 RefSeq:NP_001090934.1 UniGene:Ssc.1070
UniGene:Ssc.75275 ProteinModelPortal:A1XQR9 GeneID:100038330
KEGG:ssc:100038330 Uniprot:A1XQR9
Length = 92
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 19/58 (32%), Positives = 36/58 (62%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
++W+ + + + G + GFD Y+N+VL+D E + R+ +L +I+L G+NI +L
Sbjct: 32 QVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITLL 87
>UNIPROTKB|I3LDW9 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9823 "Sus scrofa" [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0005689 "U12-type spliceosomal
complex" evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 PANTHER:PTHR11193
GeneTree:ENSGT00390000012818 OMA:VQIWLYE EMBL:FP312914
EMBL:FP565233 ProteinModelPortal:I3LDW9 SMR:I3LDW9 PRIDE:I3LDW9
Ensembl:ENSSSCT00000023057 Uniprot:I3LDW9
Length = 92
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 19/58 (32%), Positives = 36/58 (62%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
++W+ + + + G + GFD Y+N+VL+D E + R+ +L +I+L G+NI +L
Sbjct: 32 QVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITLL 87
>MGI|MGI:98346 [details] [associations]
symbol:Snrpe "small nuclear ribonucleoprotein E" species:10090
"Mus musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0005683 "U7 snRNP" evidence=ISO] [GO:0005689
"U12-type spliceosomal complex" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISO] InterPro:IPR027078
MGI:MGI:98346 INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005689 Pfam:PF01423 GO:GO:0005683 InterPro:IPR006649
SMART:SM00651 KO:K11097 CTD:6635 HOVERGEN:HBG003229
PANTHER:PTHR11193 GeneTree:ENSGT00390000012818 OMA:VQIWLYE
EMBL:X65703 EMBL:X65704 EMBL:AK019462 EMBL:BC008262 EMBL:BC051207
EMBL:BC055765 IPI:IPI00133955 PIR:I48778 RefSeq:NP_033253.1
UniGene:Mm.249110 ProteinModelPortal:P62305 SMR:P62305
PhosphoSite:P62305 PRIDE:P62305 Ensembl:ENSMUST00000166915
GeneID:20643 KEGG:mmu:20643 UCSC:uc007cql.2 NextBio:299051
Bgee:P62305 CleanEx:MM_SNRPE Genevestigator:P62305 Uniprot:P62305
Length = 92
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 19/58 (32%), Positives = 36/58 (62%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
++W+ + + + G + GFD Y+N+VL+D E + R+ +L +I+L G+NI +L
Sbjct: 32 QVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITLL 87
>POMBASE|SPBC11G11.06c [details] [associations]
symbol:sme1 "Sm snRNP core protein Sme1" species:4896
"Schizosaccharomyces pombe" [GO:0000395 "mRNA 5'-splice site
recognition" evidence=IC] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005685 "U1 snRNP" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0045292 "mRNA cis splicing,
via spliceosome" evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISO] InterPro:IPR027078 PomBase:SPBC11G11.06c
INTERPRO:IPR001163 GO:GO:0005829 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0003723 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0046540 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 GO:GO:0005685 GO:GO:0000395 KO:K11097
PANTHER:PTHR11193 HOGENOM:HOG000223543 OMA:VQIWLYE PIR:T39333
RefSeq:NP_595724.1 ProteinModelPortal:Q9USZ3 IntAct:Q9USZ3
STRING:Q9USZ3 EnsemblFungi:SPBC11G11.06c.1 GeneID:2539607
KEGG:spo:SPBC11G11.06c OrthoDB:EOG49GPSD NextBio:20800764
Uniprot:Q9USZ3
Length = 84
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 20/57 (35%), Positives = 37/57 (64%)
Query: 22 IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
IW+ + D L G ++GFD ++N+VL+D + + A+ + +L +ILL G+NI ++
Sbjct: 28 IWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQ--VDAKNNK-RELGRILLKGDNITLI 81
>RGD|2321675 [details] [associations]
symbol:Snrpe "small nuclear ribonucleoprotein polypeptide E"
species:10116 "Rattus norvegicus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IEA;ISO]
[GO:0005689 "U12-type spliceosomal complex" evidence=IEA;ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA;ISO]
InterPro:IPR027078 RGD:2321675 INTERPRO:IPR001163
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 KO:K11097 OrthoDB:EOG4DBTGC PANTHER:PTHR11193
GeneTree:ENSGT00390000012818 OMA:VQIWLYE IPI:IPI00198418
RefSeq:XP_001064438.1 RefSeq:XP_002727191.1
Ensembl:ENSRNOT00000042614 GeneID:685587 KEGG:rno:685587 CTD:685587
NextBio:730016 Uniprot:D3ZSP1
Length = 92
Score = 98 (39.6 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 19/58 (32%), Positives = 36/58 (62%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
++W+ + + + G + GFD Y+N+VL+D E + R+ +L +I+L G+NI +L
Sbjct: 32 QVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITLL 87
>FB|FBgn0262601 [details] [associations]
symbol:SmB "Small ribonucleoprotein particle protein SmB"
species:7227 "Drosophila melanogaster" [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS;NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0016070 "RNA metabolic process" evidence=NAS]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0045495
"pole plasm" evidence=IDA] [GO:0007281 "germ cell development"
evidence=IMP] [GO:0008406 "gonad development" evidence=IMP]
[GO:0015030 "Cajal body" evidence=IDA] INTERPRO:IPR001163
GO:GO:0008406 GO:GO:0007052 EMBL:AE014134 GO:GO:0003723
GO:GO:0007281 GO:GO:0015030 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0030532
GO:GO:0045495 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 KO:K11086 InterPro:IPR017131 PIRSF:PIRSF037187
GeneTree:ENSGT00670000098029 OMA:KNNKMIQ EMBL:L02919 EMBL:AY061171
PIR:JN0574 RefSeq:NP_001188780.1 RefSeq:NP_476921.1 UniGene:Dm.3699
ProteinModelPortal:Q05856 SMR:Q05856 DIP:DIP-18712N IntAct:Q05856
MINT:MINT-283074 STRING:Q05856 PaxDb:Q05856 PRIDE:Q05856
EnsemblMetazoa:FBtr0304118 GeneID:34426 KEGG:dme:Dmel_CG5352
CTD:34426 FlyBase:FBgn0262601 InParanoid:Q05856 OrthoDB:EOG4F7M2H
PhylomeDB:Q05856 GenomeRNAi:34426 NextBio:788434 Bgee:Q05856
GermOnline:CG5352 Uniprot:Q05856
Length = 199
Score = 100 (40.3 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 20/74 (27%), Positives = 42/74 (56%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY-EITAEGRRITKLDQ------ILLNGN 73
++ ++++ + +GT K FD ++N++L D E+ +I ++ ++ + ++ +LL G
Sbjct: 16 RVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPEREEKRVLGFVLLRGE 75
Query: 74 NIAILVPGGSPDPE 87
NI L G P PE
Sbjct: 76 NIVSLTVEGPPPPE 89
>WB|WBGene00004920 [details] [associations]
symbol:snr-7 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0040027
"negative regulation of vulval development" evidence=IMP]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0043186 "P
granule" evidence=IDA] INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0009792 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0006915 GO:GO:0002119 GO:GO:0016246 GO:GO:0008380
GO:GO:0006397 GO:GO:0040011 GO:GO:0000003 GO:GO:0003723
GO:GO:0040027 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0043186
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
EMBL:FO081276 HOGENOM:HOG000223546 KO:K11099
GeneTree:ENSGT00510000046985 EMBL:AF303264 RefSeq:NP_491032.1
UniGene:Cel.19416 ProteinModelPortal:Q9N4G9 SMR:Q9N4G9
IntAct:Q9N4G9 STRING:Q9N4G9 PaxDb:Q9N4G9 EnsemblMetazoa:Y71F9B.4.1
EnsemblMetazoa:Y71F9B.4.2 GeneID:171834 KEGG:cel:CELE_Y71F9B.4
UCSC:Y71F9B.4 CTD:171834 WormBase:Y71F9B.4 InParanoid:Q9N4G9
OMA:VVIMEPK NextBio:872901 Uniprot:Q9N4G9
Length = 77
Score = 97 (39.2 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 21/75 (28%), Positives = 45/75 (60%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
S+ P EL + + ++ + + G++ + G L+GFD ++NMV+++ EY+ +G + L
Sbjct: 2 SKTHPPEL-KKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQ--KDGGSVN-L 57
Query: 66 DQILLNGNNIAILVP 80
++ GN++ I+ P
Sbjct: 58 GMTVIRGNSVVIMEP 72
>POMBASE|SPCC285.12 [details] [associations]
symbol:lsm7 "U6 snRNP-associated protein Lsm7
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=NAS] [GO:0005688 "U6
snRNP" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006402 "mRNA catabolic process" evidence=ISS] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0030490 "maturation of
SSU-rRNA" evidence=ISO] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISO] PomBase:SPCC285.12 INTERPRO:IPR001163
GO:GO:0005829 EMBL:CU329672 GenomeReviews:CU329672_GR GO:GO:0005681
GO:GO:0003723 GO:GO:0008033 GO:GO:0006402 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0030490 GO:GO:0045292
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
PDB:3SWN PDB:4EMK PDBsum:3SWN PDBsum:4EMK eggNOG:NOG276686
KO:K12626 OMA:VLDNTVE InterPro:IPR017132 PIRSF:PIRSF037188
HOGENOM:HOG000223548 PIR:T41258 RefSeq:NP_588340.1
ProteinModelPortal:O74499 STRING:O74499 EnsemblFungi:SPCC285.12.1
GeneID:2538964 KEGG:spo:SPCC285.12 OrthoDB:EOG4BGD5N
EvolutionaryTrace:O74499 NextBio:20800139 Uniprot:O74499
Length = 113
Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT----KLDQIL 69
+ R +I G +++ G LKGFD +N+VL+DV E E ++T KL ++
Sbjct: 28 LSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVV 87
Query: 70 LNGNNIAILVP-GGS---PDP 86
+ G + ++ P GS P+P
Sbjct: 88 VRGTTLVLIAPMDGSEEIPNP 108
>RGD|2319339 [details] [associations]
symbol:LOC100361838 "small nuclear ribonucleoprotein E-like"
species:10116 "Rattus norvegicus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] InterPro:IPR027078 RGD:2319339 INTERPRO:IPR001163
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 OrthoDB:EOG4DBTGC PANTHER:PTHR11193 OMA:INIIFRY
IPI:IPI00363837 RefSeq:XP_001065908.1 Ensembl:ENSRNOT00000043934
GeneID:360844 KEGG:rno:360844 CTD:360844 NextBio:674328
Uniprot:D4AAS3
Length = 92
Score = 96 (38.9 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 19/58 (32%), Positives = 36/58 (62%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
++W+ + + + G + GFD Y+N+VL+D E + R+ +L +I+L G+NI +L
Sbjct: 32 QVWLYEQVNIRIKGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITLL 87
>FB|FBgn0261790 [details] [associations]
symbol:SmE "Small ribonucleoprotein particle protein SmE"
species:7227 "Drosophila melanogaster" [GO:0005634 "nucleus"
evidence=IDA] [GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=ISS;IDA] [GO:0005681 "spliceosomal complex" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IC;ISS]
[GO:0000245 "spliceosomal complex assembly" evidence=ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA]
InterPro:IPR027078 INTERPRO:IPR001163 EMBL:AE014134 GO:GO:0003723
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0030532 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 KO:K11097 PANTHER:PTHR11193
GeneTree:ENSGT00390000012818 OMA:VQIWLYE EMBL:BT003597
RefSeq:NP_609162.1 UniGene:Dm.33848 ProteinModelPortal:Q9VLV5
SMR:Q9VLV5 DIP:DIP-18284N IntAct:Q9VLV5 MINT:MINT-342402
STRING:Q9VLV5 PaxDb:Q9VLV5 PRIDE:Q9VLV5 EnsemblMetazoa:FBtr0079560
GeneID:34080 KEGG:dme:Dmel_CG18591 UCSC:CG18591-RA CTD:34080
FlyBase:FBgn0261790 InParanoid:Q9VLV5 OrthoDB:EOG4R7STC
PhylomeDB:Q9VLV5 GenomeRNAi:34080 NextBio:786757 Bgee:Q9VLV5
GermOnline:CG18591 Uniprot:Q9VLV5
Length = 94
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 22/64 (34%), Positives = 35/64 (54%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVP 80
++W+ + G + GFD Y+N+VL+D E + RR L +I+L G+NI L+
Sbjct: 31 QVWLYENISLRIEGHIVGFDEYMNLVLDDAEEVYVKTRQRR--NLGRIMLKGDNIT-LIQ 87
Query: 81 GGSP 84
SP
Sbjct: 88 NVSP 91
>SGD|S000006434 [details] [associations]
symbol:LSM3 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;TAS;IPI] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005688 "U6 snRNP"
evidence=IDA;TAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS;IPI] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=NAS;IDA] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=IPI] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=TAS] SGD:S000006434 INTERPRO:IPR001163 GO:GO:0005737
GO:GO:0005730 EMBL:BK006945 GO:GO:0003723 GO:GO:0008033
GO:GO:0000956 GO:GO:0000398 EMBL:U21094 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0006364 GO:GO:0046540 RefSeq:NP_013543.3
GeneID:851159 KEGG:sce:YLR438C-A KO:K12622 GO:GO:0005732
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:NOG236203 GeneTree:ENSGT00390000013951 HOGENOM:HOG000223550
OMA:MVFVRGD OrthoDB:EOG4JQ77D EMBL:Z30582 EMBL:X06790 PIR:S78568
RefSeq:NP_013545.3 PDB:3BW1 PDBsum:3BW1 ProteinModelPortal:P57743
SMR:P57743 DIP:DIP-2587N IntAct:P57743 MINT:MINT-422505
STRING:P57743 PaxDb:P57743 PeptideAtlas:P57743
EnsemblFungi:YLR438C-A GeneID:851161 KEGG:sce:YLR440C
CYGD:YLR438c-a EvolutionaryTrace:P57743 NextBio:967948
Genevestigator:P57743 GermOnline:YLR438C-A Uniprot:P57743
Length = 89
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 20/81 (24%), Positives = 43/81 (53%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE--YEITAE--GRRITKL 65
P +L+ + ++++ ++G + LVGTL+ FD + N+VL D E Y++ E +
Sbjct: 4 PLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRC 63
Query: 66 DQILLNGNNIAIL-VPGGSPD 85
+ + + G+ + ++ P D
Sbjct: 64 EMVFIRGDTVTLISTPSEDDD 84
>ZFIN|ZDB-GENE-040912-105 [details] [associations]
symbol:zgc:103688 "zgc:103688" species:7955 "Danio
rerio" [GO:0003674 "molecular_function" evidence=ND]
INTERPRO:IPR001163 ZFIN:ZDB-GENE-040912-105 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:COG1958 HOVERGEN:HBG000513 OrthoDB:EOG4BRWND
HOGENOM:HOG000223546 KO:K11099 EMBL:BC081512 IPI:IPI00482230
RefSeq:NP_001004660.2 RefSeq:NP_001161373.1 UniGene:Dr.83589
ProteinModelPortal:Q66I63 STRING:Q66I63 PRIDE:Q66I63 GeneID:447922
KEGG:dre:447922 InParanoid:Q66I63 NextBio:20832442
ArrayExpress:Q66I63 Bgee:Q66I63 Uniprot:Q66I63
Length = 76
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 21/73 (28%), Positives = 43/73 (58%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
S+ P EL + + K+ + + G + + G L+GFD ++N+V++D E A G ++ +
Sbjct: 2 SEAHPPEL-KKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVVDDTIEM---APGGQMNTI 57
Query: 66 DQILLNGNNIAIL 78
+++ GN+I +L
Sbjct: 58 GMVVIRGNSIIML 70
>SGD|S000005091 [details] [associations]
symbol:LSM7 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=IPI] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IMP;IPI]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=NAS;IDA]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0030490 "maturation of SSU-rRNA" evidence=IMP] [GO:0006364
"rRNA processing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;TAS;IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IMP] [GO:0005688 "U6 snRNP" evidence=IDA] SGD:S000005091
INTERPRO:IPR001163 GO:GO:0005737 GO:GO:0005730 EMBL:BK006947
GO:GO:0003723 GO:GO:0008033 EMBL:Z46843 GO:GO:0000956 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0030490
GO:GO:0005732 GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:NOG276686 KO:K12626 InterPro:IPR017132
PIRSF:PIRSF037188 HOGENOM:HOG000223548 OrthoDB:EOG4BGD5N
EMBL:Z71423 PIR:S55137 RefSeq:NP_014252.2 ProteinModelPortal:P53905
SMR:P53905 DIP:DIP-1419N IntAct:P53905 MINT:MINT-398907
STRING:P53905 PaxDb:P53905 PeptideAtlas:P53905 EnsemblFungi:YNL147W
GeneID:855575 KEGG:sce:YNL147W CYGD:YNL147w
GeneTree:ENSGT00510000047872 OMA:ENNTELI NextBio:979694
Genevestigator:P53905 GermOnline:YNL147W Uniprot:P53905
Length = 115
Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 23/64 (35%), Positives = 35/64 (54%)
Query: 20 SKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILV 79
SKI V + G K ++G LKG+D +N+VL+D EY + T+L I N + + V
Sbjct: 36 SKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTEL--ISKNARKLGLTV 93
Query: 80 PGGS 83
G+
Sbjct: 94 IRGT 97
>TAIR|locus:2014922 [details] [associations]
symbol:LSM3A "AT1G21190" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] INTERPRO:IPR001163 EMBL:CP002684
InterPro:IPR010920 SUPFAM:SSF50182 KO:K12622 EMBL:AC036104
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HOGENOM:HOG000223550
HSSP:Q8ZYG5 ProtClustDB:CLSN2679472 EMBL:AF334722 IPI:IPI00535788
PIR:B86345 RefSeq:NP_173542.1 UniGene:At.15544
ProteinModelPortal:Q9LMN4 SMR:Q9LMN4 STRING:Q9LMN4 PRIDE:Q9LMN4
EnsemblPlants:AT1G21190.1 GeneID:838714 KEGG:ath:AT1G21190
TAIR:At1g21190 InParanoid:Q9LMN4 OMA:IEERIYV PhylomeDB:Q9LMN4
ArrayExpress:Q9LMN4 Genevestigator:Q9LMN4 Uniprot:Q9LMN4
Length = 97
Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI I +I+V ++ D+EL G L FD ++NM+L DV E T E
Sbjct: 12 PLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIE 60
>WB|WBGene00004919 [details] [associations]
symbol:snr-6 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0032940
"secretion by cell" evidence=IMP] [GO:0018996 "molting cycle,
collagen and cuticulin-based cuticle" evidence=IMP] [GO:0040027
"negative regulation of vulval development" evidence=IMP]
[GO:0006997 "nucleus organization" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0043186 "P granule" evidence=IDA]
InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0009792
GO:GO:0040007 GO:GO:0006915 GO:GO:0002119 GO:GO:0032940
GO:GO:0008380 GO:GO:0018996 GO:GO:0006397 GO:GO:0040011
GO:GO:0003723 GO:GO:0007281 EMBL:Z98866 GO:GO:0040027
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0006997 GO:GO:0043186
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
KO:K11097 PANTHER:PTHR11193 PIR:T27041 RefSeq:NP_499620.1
UniGene:Cel.9740 ProteinModelPortal:Q9XTU6 SMR:Q9XTU6
DIP:DIP-24866N IntAct:Q9XTU6 MINT:MINT-1060547 STRING:Q9XTU6
PaxDb:Q9XTU6 EnsemblMetazoa:Y49E10.15 GeneID:176668
KEGG:cel:CELE_Y49E10.15 UCSC:Y49E10.15 CTD:176668
WormBase:Y49E10.15 GeneTree:ENSGT00390000012818
HOGENOM:HOG000223543 InParanoid:Q9XTU6 OMA:VQIWLYE NextBio:893536
Uniprot:Q9XTU6
Length = 90
Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 24/79 (30%), Positives = 42/79 (53%)
Query: 4 NPSQLLPSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEG 59
N + P LI R + ++ IW+ L G + GFD ++N+V ++ E + +G
Sbjct: 7 NKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEVNMKTKG 66
Query: 60 RRITKLDQILLNGNNIAIL 78
R K+ +ILL G+NI ++
Sbjct: 67 RN--KIGRILLKGDNITLI 83
>WB|WBGene00003077 [details] [associations]
symbol:lsm-3 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] INTERPRO:IPR001163 GO:GO:0009792 GO:GO:0000932
InterPro:IPR010920 SUPFAM:SSF50182 KO:K12622 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:NOG236203
GeneTree:ENSGT00390000013951 HOGENOM:HOG000223550 OMA:MVFVRGD
EMBL:AL132865 HSSP:Q8ZYG5 RefSeq:NP_502579.1
ProteinModelPortal:Q9U1W8 SMR:Q9U1W8 DIP:DIP-26669N
MINT:MINT-1050579 STRING:Q9U1W8 PaxDb:Q9U1W8
EnsemblMetazoa:Y62E10A.12.1 EnsemblMetazoa:Y62E10A.12.2
GeneID:178303 KEGG:cel:CELE_Y62E10A.12 UCSC:Y62E10A.12.1 CTD:178303
WormBase:Y62E10A.12 InParanoid:Q9U1W8 NextBio:900574 Uniprot:Q9U1W8
Length = 102
Score = 94 (38.1 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +L+ + +++V M+ D+EL G L+ FD ++NMVL +V E T E
Sbjct: 17 PLDLLRLSLDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETITTRE 65
>ASPGD|ASPL0000056132 [details] [associations]
symbol:AN0767 species:162425 "Emericella nidulans"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0030490 "maturation of SSU-rRNA" evidence=IEA] [GO:0000956
"nuclear-transcribed mRNA catabolic process" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005732 "small nucleolar ribonucleoprotein
complex" evidence=IEA] [GO:0005688 "U6 snRNP" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] INTERPRO:IPR001163 EMBL:BN001308
GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:AACD01000012 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE InterPro:IPR017132
PIRSF:PIRSF037188 HOGENOM:HOG000223548 OrthoDB:EOG4BGD5N
RefSeq:XP_658371.1 ProteinModelPortal:Q5BFB3 STRING:Q5BFB3
EnsemblFungi:CADANIAT00001898 GeneID:2876542 KEGG:ani:AN0767.2
Uniprot:Q5BFB3
Length = 136
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 24/72 (33%), Positives = 39/72 (54%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK-LDQILLNG 72
+ + + ++ V G +E+ G LKG+D +N+VL+DV E EG T+ L I+ G
Sbjct: 53 LTKYMDKEVRVKFNGGREVSGILKGYDQLMNLVLDDVKESMRDDEGNETTRALGLIVARG 112
Query: 73 NNIAILVPG-GS 83
I ++ P GS
Sbjct: 113 TLIVLISPADGS 124
>ASPGD|ASPL0000001547 [details] [associations]
symbol:AN10781 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003674
"molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
INTERPRO:IPR001163 EMBL:BN001301 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HOGENOM:HOG000182713
OMA:GMQQQKQ InterPro:IPR027141 PANTHER:PTHR23338
EnsemblFungi:CADANIAT00006789 Uniprot:C8V1T8
Length = 119
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 24/74 (32%), Positives = 40/74 (54%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQ 67
+LP L+ G + V +K + L G L D ++N++L +V + + EG R KL +
Sbjct: 1 MLPLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILREVVQ--TSPEGDRFFKLPE 58
Query: 68 ILLNGNNIAIL-VP 80
+ + GNNI L +P
Sbjct: 59 VYVRGNNIKYLRIP 72
>ASPGD|ASPL0000049189 [details] [associations]
symbol:AN1495 species:162425 "Emericella nidulans"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005685 "U1 snRNP" evidence=IEA] [GO:0071004 "U2-type
prespliceosome" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005682 "U5 snRNP" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] INTERPRO:IPR001163 EMBL:BN001307 GO:GO:0003676
GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
EMBL:AACD01000023 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOGENOM:HOG000223546 KO:K11099 OMA:VVIMEPK OrthoDB:EOG4XWK7N
RefSeq:XP_659099.1 ProteinModelPortal:Q5BD85 STRING:Q5BD85
EnsemblFungi:CADANIAT00008119 GeneID:2874980 KEGG:ani:AN1495.2
Uniprot:Q5BD85
Length = 78
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 15/58 (25%), Positives = 40/58 (68%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
+++ + G+++++G L+G+DV++N+VL++ +E G ++ + I++ GN++ +L
Sbjct: 15 RVFCELNGNRKVIGVLRGYDVFMNIVLDEA--FEEKPGGEKVA-IGMIVIRGNSVVML 69
>ASPGD|ASPL0000007577 [details] [associations]
symbol:AN6735 species:162425 "Emericella nidulans"
[GO:0005685 "U1 snRNP" evidence=IEA] [GO:0071004 "U2-type
prespliceosome" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0005682 "U5 snRNP" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] [GO:0003674 "molecular_function"
evidence=ND] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0003676
EMBL:BN001301 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 PANTHER:PTHR11193
HOGENOM:HOG000223543 OMA:VQIWLYE EnsemblFungi:CADANIAT00007528
Uniprot:C8V1X5
Length = 94
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 18/59 (30%), Positives = 36/59 (61%)
Query: 22 IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEIT--AEGRRITKLDQILLNGNNIAIL 78
IW+ + + G ++GFD ++N+V++D E + +E + L QILL G+N++++
Sbjct: 32 IWLYEQLAFRIEGKIRGFDEFMNLVIDDAVEVRLATKSEEEKRRPLGQILLKGDNVSLI 90
>UNIPROTKB|F1P280 [details] [associations]
symbol:LSM3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00390000013951 OMA:MVFVRGD EMBL:AADN02014130
IPI:IPI00596206 Ensembl:ENSGALT00000033548 Uniprot:F1P280
Length = 96
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+EL G L +D ++NM+L DV E T E
Sbjct: 11 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 59
>UNIPROTKB|Q32PE9 [details] [associations]
symbol:LSM3 "U6 snRNA-associated Sm-like protein LSm3"
species:9913 "Bos taurus" [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 KO:K12622 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 EMBL:BC108142 IPI:IPI00715218 RefSeq:NP_001032564.1
UniGene:Bt.53058 HSSP:Q5CXX3 ProteinModelPortal:Q32PE9 SMR:Q32PE9
STRING:Q32PE9 PRIDE:Q32PE9 Ensembl:ENSBTAT00000009684 GeneID:614759
KEGG:bta:614759 CTD:27258 eggNOG:NOG236203
GeneTree:ENSGT00390000013951 HOGENOM:HOG000223550
HOVERGEN:HBG052368 InParanoid:Q32PE9 OMA:MVFVRGD OrthoDB:EOG42NJ20
NextBio:20899271 Uniprot:Q32PE9
Length = 102
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+EL G L +D ++NM+L DV E T E
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
>UNIPROTKB|P62310 [details] [associations]
symbol:LSM3 "U6 snRNA-associated Sm-like protein LSm3"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=TAS] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
EMBL:AF182289 INTERPRO:IPR001163 GO:GO:0005829 EMBL:CH471055
GO:GO:0003723 GO:GO:0000398 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0043928 KO:K12622 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 CTD:27258 eggNOG:NOG236203
HOGENOM:HOG000223550 HOVERGEN:HBG052368 OMA:MVFVRGD
OrthoDB:EOG42NJ20 EMBL:AJ238095 EMBL:AF182418 EMBL:CR457185
EMBL:BC007055 IPI:IPI00219229 RefSeq:NP_055278.1 UniGene:Hs.111632
ProteinModelPortal:P62310 SMR:P62310 DIP:DIP-31218N IntAct:P62310
MINT:MINT-1036960 STRING:P62310 PhosphoSite:P62310 DMDM:61227725
PaxDb:P62310 PeptideAtlas:P62310 PRIDE:P62310
Ensembl:ENST00000306024 GeneID:27258 KEGG:hsa:27258 UCSC:uc003byn.3
GeneCards:GC03P014219 HGNC:HGNC:17874 HPA:HPA044966 MIM:607283
neXtProt:NX_P62310 PharmGKB:PA134881991 InParanoid:P62310
PhylomeDB:P62310 ChiTaRS:LSM3 GenomeRNAi:27258 NextBio:50206
ArrayExpress:P62310 Bgee:P62310 CleanEx:HS_LSM3
Genevestigator:P62310 GermOnline:ENSG00000170860 Uniprot:P62310
Length = 102
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+EL G L +D ++NM+L DV E T E
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
>UNIPROTKB|F2Z5S4 [details] [associations]
symbol:LSM3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
INTERPRO:IPR001163 InterPro:IPR010920 SUPFAM:SSF50182 KO:K12622
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 CTD:27258
GeneTree:ENSGT00390000013951 OMA:MVFVRGD EMBL:CU633560
RefSeq:NP_001231857.1 UniGene:Ssc.1234 ProteinModelPortal:F2Z5S4
SMR:F2Z5S4 PRIDE:F2Z5S4 Ensembl:ENSSSCT00000012698 GeneID:100514071
KEGG:ssc:100514071 Uniprot:F2Z5S4
Length = 102
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+EL G L +D ++NM+L DV E T E
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
>UNIPROTKB|G4NLE3 [details] [associations]
symbol:MGG_02938 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] INTERPRO:IPR001163 EMBL:CM001237 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
KO:K12626 InterPro:IPR017132 PIRSF:PIRSF037188
RefSeq:XP_003720770.1 ProteinModelPortal:G4NLE3
EnsemblFungi:MGG_02938T0 GeneID:2682491 KEGG:mgr:MGG_02938
Uniprot:G4NLE3
Length = 146
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK-LDQILLNGNNIAILV 79
++ V G +E++GTLKG+D +N+VL++V E EG ++ L +++ G + +
Sbjct: 68 EVQVKFNGGREVIGTLKGYDALMNLVLDEVKETMRDEEGNESSRPLGLVVVRGTLLVAIS 127
Query: 80 P 80
P
Sbjct: 128 P 128
>MGI|MGI:1914928 [details] [associations]
symbol:Lsm3 "LSM3 homolog, U6 small nuclear RNA associated
(S. cerevisiae)" species:10090 "Mus musculus" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0030629 "U6 snRNA
3'-end binding" evidence=ISO] [GO:0046540 "U4/U6 x U5 tri-snRNP
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] MGI:MGI:1914928 INTERPRO:IPR001163 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 GO:GO:0071013 InterPro:IPR010920
SUPFAM:SSF50182 KO:K12622 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 CTD:27258 eggNOG:NOG236203
GeneTree:ENSGT00390000013951 HOGENOM:HOG000223550
HOVERGEN:HBG052368 OMA:MVFVRGD OrthoDB:EOG42NJ20 EMBL:AK003125
EMBL:AK007849 EMBL:AK021251 EMBL:BC054368 EMBL:BC062875
IPI:IPI00230388 RefSeq:NP_080585.1 UniGene:Mm.246693
UniGene:Mm.410956 ProteinModelPortal:P62311 SMR:P62311
STRING:P62311 PhosphoSite:P62311 REPRODUCTION-2DPAGE:IPI00230388
REPRODUCTION-2DPAGE:P62311 PaxDb:P62311 PRIDE:P62311
Ensembl:ENSMUST00000040607 GeneID:67678 KEGG:mmu:67678
UCSC:uc009cye.1 InParanoid:P62311 NextBio:325233 Bgee:P62311
Genevestigator:P62311 GermOnline:ENSMUSG00000034192 Uniprot:P62311
Length = 102
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+EL G L +D ++NM+L DV E T E
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
>RGD|1305971 [details] [associations]
symbol:Lsm3 "LSM3 homolog, U6 small nuclear RNA associated (S.
cerevisiae)" species:10116 "Rattus norvegicus" [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA;ISO] RGD:1305971
INTERPRO:IPR001163 GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:CH473957 KO:K12622 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 CTD:27258 GeneTree:ENSGT00390000013951 OMA:MVFVRGD
OrthoDB:EOG42NJ20 IPI:IPI00364533 RefSeq:NP_001100081.1
UniGene:Rn.203046 SMR:D4A7U6 Ensembl:ENSRNOT00000011557
GeneID:297455 KEGG:rno:297455 UCSC:RGD:1305971 NextBio:642291
Uniprot:D4A7U6
Length = 102
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+EL G L +D ++NM+L DV E T E
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
>TAIR|locus:2036257 [details] [associations]
symbol:LSM3B "AT1G76860" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] INTERPRO:IPR001163 EMBL:CP002684
GenomeReviews:CT485782_GR InterPro:IPR010920 SUPFAM:SSF50182
KO:K12622 EMBL:AC079283 UniGene:At.26946 UniGene:At.64098
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:NOG236203
HOGENOM:HOG000223550 OMA:MVFVRGD HSSP:Q8ZYG5 EMBL:AY086266
EMBL:BT025575 IPI:IPI00540699 PIR:D96797 RefSeq:NP_177812.1
ProteinModelPortal:Q9C6K5 SMR:Q9C6K5 STRING:Q9C6K5 PaxDb:Q9C6K5
PRIDE:Q9C6K5 EnsemblPlants:AT1G76860.1 GeneID:844021
KEGG:ath:AT1G76860 TAIR:At1g76860 InParanoid:Q9C6K5
PhylomeDB:Q9C6K5 ProtClustDB:CLSN2679472 Genevestigator:Q9C6K5
Uniprot:Q9C6K5
Length = 98
Score = 93 (37.8 bits), Expect = 0.00010, P = 0.00010
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V ++ D+EL G L FD ++NM+L DV E T E
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVE 60
>FB|FBgn0051184 [details] [associations]
symbol:LSm3 species:7227 "Drosophila melanogaster"
[GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IC;ISS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=ISS] [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IMP] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
INTERPRO:IPR001163 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
GO:GO:0033962 InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005688
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:NOG236203
HSSP:O29386 OrthoDB:EOG45X6CK EMBL:BT001552
ProteinModelPortal:Q8IGW7 SMR:Q8IGW7 STRING:Q8IGW7 PaxDb:Q8IGW7
PRIDE:Q8IGW7 FlyBase:FBgn0051184 InParanoid:Q8IGW7
ArrayExpress:Q8IGW7 Bgee:Q8IGW7 Uniprot:Q8IGW7
Length = 103
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + K++V M+ ++EL G L FD ++NMVL D E T E
Sbjct: 18 PLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVE 66
>UNIPROTKB|F1ME11 [details] [associations]
symbol:LOC100296197 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] InterPro:IPR027078
INTERPRO:IPR001163 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 PANTHER:PTHR11193
GeneTree:ENSGT00390000012818 OMA:VQIWLYE EMBL:DAAA02072295
IPI:IPI00905250 Ensembl:ENSBTAT00000057036 Uniprot:F1ME11
Length = 91
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 18/58 (31%), Positives = 35/58 (60%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
++W+ + + + G + GFD Y N+VL+D E + R+ +L +I+L G+NI ++
Sbjct: 31 QVWLYEQVNMRIEGCIIGFDEYRNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITLI 86
>UNIPROTKB|J9P098 [details] [associations]
symbol:LOC100855941 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 PANTHER:PTHR11193 GeneTree:ENSGT00390000012818
OMA:VQIWLYE EMBL:AAEX03000616 Ensembl:ENSCAFT00000003298
Uniprot:J9P098
Length = 92
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 18/58 (31%), Positives = 36/58 (62%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
++W+ + + + G + GFD Y+++VL+D E + R+ +L +I+L G+NI +L
Sbjct: 32 QVWLYEQINMRIEGCIIGFDEYMSLVLDDAKEIHSKTKSRK--QLGRIMLKGDNITLL 87
>TAIR|locus:2087522 [details] [associations]
symbol:LSM1B "SM-like 1B" species:3702 "Arabidopsis
thaliana" [GO:0005634 "nucleus" evidence=ISM;ISS] [GO:0005732
"small nucleolar ribonucleoprotein complex" evidence=ISS]
[GO:0010228 "vegetative to reproductive phase transition of
meristem" evidence=RCA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016070 "RNA metabolic process" evidence=IGI]
INTERPRO:IPR001163 EMBL:CP002686 GenomeReviews:BA000014_GR
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HOGENOM:HOG000223544 KO:K12620 eggNOG:COG1958
HSSP:Q8ZYG5 EMBL:AY084768 EMBL:BT002795 EMBL:BT004340
IPI:IPI00537844 RefSeq:NP_566476.1 RefSeq:NP_850580.1
UniGene:At.39294 ProteinModelPortal:Q8LFL8 SMR:Q8LFL8 IntAct:Q8LFL8
STRING:Q8LFL8 PaxDb:Q8LFL8 PRIDE:Q8LFL8 EnsemblPlants:AT3G14080.1
EnsemblPlants:AT3G14080.2 GeneID:820624 KEGG:ath:AT3G14080
TAIR:At3g14080 InParanoid:Q8LFL8 OMA:TEREELP PhylomeDB:Q8LFL8
ProtClustDB:CLSN2687863 ArrayExpress:Q8LFL8 Genevestigator:Q8LFL8
Uniprot:Q8LFL8
Length = 128
Score = 92 (37.4 bits), Expect = 0.00013, P = 0.00013
Identities = 20/74 (27%), Positives = 38/74 (51%)
Query: 5 PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK 64
P ++ S + + K+ V+++ ++L+GTL+ FD + N VLE E I E
Sbjct: 6 PEEIYLSTSLASYLDRKLLVLLRDGRKLMGTLRSFDQFANAVLEGACERVIVGEQYCDIP 65
Query: 65 LDQILLNGNNIAIL 78
L ++ G N+ ++
Sbjct: 66 LGLYVIRGENVVLI 79
>DICTYBASE|DDB_G0288479 [details] [associations]
symbol:lsm8 "putative U6 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] dictyBase:DDB_G0288479
INTERPRO:IPR001163 GO:GO:0005730 GenomeReviews:CM000154_GR
GO:GO:0003723 EMBL:AAFI02000111 GO:GO:0006402 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0005732
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:NOG235625 KO:K12627 OMA:NHTVSII RefSeq:XP_001134524.1
ProteinModelPortal:Q1ZXD5 STRING:Q1ZXD5 EnsemblProtists:DDB0233384
GeneID:8626646 KEGG:ddi:DDB_G0288479 Uniprot:Q1ZXD5
Length = 94
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 20/75 (26%), Positives = 41/75 (54%)
Query: 13 LIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNG 72
+++ + ++ V+ + ++GTL+G D +N+VLE E + EG + L L+ G
Sbjct: 3 MLESYLKKQVLVLTADGRSIIGTLRGIDQTINVVLEKCHERVYSDEGIEVIPLGVHLIKG 62
Query: 73 NNIAILVPGGSPDPE 87
+++A++ G D E
Sbjct: 63 DDVAVI---GEVDDE 74
>DICTYBASE|DDB_G0277107 [details] [associations]
symbol:lsm3 "putative U6 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] dictyBase:DDB_G0277107
INTERPRO:IPR001163 GO:GO:0005730 GenomeReviews:CM000151_GR
GO:GO:0003723 GO:GO:0006402 EMBL:AAFI02000019 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 KO:K12622
GO:GO:0005732 GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:NOG236203 OMA:MVFVRGD RefSeq:XP_001134590.1
ProteinModelPortal:Q1ZXK3 STRING:Q1ZXK3 EnsemblProtists:DDB0233377
GeneID:8620835 KEGG:ddi:DDB_G0277107 ProtClustDB:CLSZ2445184
Uniprot:Q1ZXK3
Length = 97
Score = 91 (37.1 bits), Expect = 0.00017, P = 0.00017
Identities = 26/74 (35%), Positives = 40/74 (54%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P +LI + +I+V M+ D+EL G L +D ++NM+L DV E E T ++I+
Sbjct: 12 PLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEETIKVVEKDEETD-EEII 70
Query: 70 LN-GNNIAILVPGG 82
N NI +L G
Sbjct: 71 RNIKRNIKMLFVRG 84
>GENEDB_PFALCIPARUM|PF08_0049 [details] [associations]
symbol:PF08_0049 "ribonucleoprotein, putative"
species:5833 "Plasmodium falciparum" [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] INTERPRO:IPR001163 InterPro:IPR010920 SUPFAM:SSF50182
KO:K12622 EMBL:AL844507 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HOGENOM:HOG000223550 RefSeq:XP_002808862.1
ProteinModelPortal:C0H4W2 PRIDE:C0H4W2
EnsemblProtists:PF08_0049:mRNA GeneID:2655500 KEGG:pfa:PF08_0049
EuPathDB:PlasmoDB:PF3D7_0819900 ProtClustDB:CLSZ2444967
Uniprot:C0H4W2
Length = 91
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE---YEITAEGRRITK-- 64
P + I + +I++ KGD+EL+G L +D ++NM+L +V E Y + K
Sbjct: 10 PLDYIRLNMEEEIFLKCKGDRELIGKLDAYDNHLNMILSNVRETYKYSVKENDEETVKKM 69
Query: 65 ---LDQILLNGNNIAILV 79
LD + + G++I ILV
Sbjct: 70 ERNLDMVFVRGDSI-ILV 86
>UNIPROTKB|G4MSI0 [details] [associations]
symbol:MGG_01450 "Sm snRNP core protein Sme1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0003674
"molecular_function" evidence=ND] InterPro:IPR027078
INTERPRO:IPR001163 EMBL:CM001232 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 KO:K11097
PANTHER:PTHR11193 RefSeq:XP_003714403.1 ProteinModelPortal:G4MSI0
EnsemblFungi:MGG_01450T0 GeneID:2679702 KEGG:mgr:MGG_01450
Uniprot:G4MSI0
Length = 95
Score = 90 (36.7 bits), Expect = 0.00021, P = 0.00021
Identities = 19/60 (31%), Positives = 37/60 (61%)
Query: 22 IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY-EITAEGRRITK--LDQILLNGNNIAIL 78
IW+ + + G ++GFD ++N+V++D E +IT + + L QILL G+N++++
Sbjct: 32 IWLYEQLGIRIEGKIRGFDEFMNLVIDDAIEVKQITKDNTEEKRRPLGQILLKGDNVSLI 91
>SGD|S000003660 [details] [associations]
symbol:LSM1 "Lsm (Like Sm) protein" species:4932
"Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0000339 "RNA cap binding"
evidence=IGI;IMP;IPI] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA;IMP;IDA] [GO:0000288 "nuclear-transcribed mRNA
catabolic process, deadenylation-dependent decay" evidence=IGI;IMP]
[GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IGI;IMP;IPI] [GO:0005845 "mRNA
cap binding complex" evidence=IPI] [GO:0030529 "ribonucleoprotein
complex" evidence=IEA] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] SGD:S000003660 INTERPRO:IPR001163 GO:GO:0005634
EMBL:BK006943 GO:GO:0006397 GO:GO:0000932 GO:GO:0005845
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0000290 Pfam:PF01423
GO:GO:0000339 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00570000079167 HOGENOM:HOG000223544 KO:K12620
eggNOG:COG1958 OrthoDB:EOG4GQTF9 EMBL:Z49399 EMBL:AY558307
PIR:S56905 RefSeq:NP_012411.1 ProteinModelPortal:P47017 SMR:P47017
DIP:DIP-1330N IntAct:P47017 MINT:MINT-390497 STRING:P47017
PaxDb:P47017 PeptideAtlas:P47017 EnsemblFungi:YJL124C GeneID:853318
KEGG:sce:YJL124C CYGD:YJL124c OMA:FMVRGEN NextBio:973666
Genevestigator:P47017 GermOnline:YJL124C Uniprot:P47017
Length = 172
Score = 91 (37.1 bits), Expect = 0.00024, P = 0.00024
Identities = 18/63 (28%), Positives = 36/63 (57%)
Query: 18 IGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQ--ILLNGNNI 75
+ KI+V+++ + L G L+ FD Y N++L+D E +E + + D+ ++ G N+
Sbjct: 50 VDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEENKYAEEDRGIFMIRGENV 109
Query: 76 AIL 78
+L
Sbjct: 110 VML 112
>UNIPROTKB|E1BHK8 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9913 "Bos taurus" [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163 GO:GO:0071013
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005689 Pfam:PF01423
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 PANTHER:PTHR11193
GeneTree:ENSGT00390000012818 EMBL:DAAA02049203 IPI:IPI00690390
Ensembl:ENSBTAT00000022848 OMA:PPINCIY NextBio:20929647
Uniprot:E1BHK8
Length = 92
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 18/58 (31%), Positives = 35/58 (60%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
++W+ + + G++ GFD +N+VL+D E + R+ +L +I+L G+NI +L
Sbjct: 32 RVWLYEQVNMRTEGSIIGFDECMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITLL 87
>UNIPROTKB|Q3ZCE0 [details] [associations]
symbol:NAA38 "N-alpha-acetyltransferase 38, NatC auxiliary
subunit" species:9913 "Bos taurus" [GO:0005634 "nucleus"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00570000079167 eggNOG:NOG235625 KO:K12627 OMA:NHTVSII
EMBL:AY644517 EMBL:BC102499 IPI:IPI00714062 RefSeq:NP_001029912.1
UniGene:Bt.73360 ProteinModelPortal:Q3ZCE0 SMR:Q3ZCE0 STRING:Q3ZCE0
Ensembl:ENSBTAT00000016780 GeneID:613630 KEGG:bta:613630 CTD:51691
HOVERGEN:HBG105578 InParanoid:Q3ZCE0 OrthoDB:EOG48SGVN
NextBio:20898677 Uniprot:Q3ZCE0
Length = 96
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 19/66 (28%), Positives = 38/66 (57%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITA-EGRRITKLDQILLNG 72
++ I + VI + +VGTLKGFD +N++L++ E ++ +G L ++ G
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 73 NNIAIL 78
+N+A++
Sbjct: 65 DNVAVI 70
>UNIPROTKB|O95777 [details] [associations]
symbol:NAA38 "N-alpha-acetyltransferase 38, NatC auxiliary
subunit" species:9606 "Homo sapiens" [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0017070 "U6 snRNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=NAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=NAS] [GO:0005515 "protein binding"
evidence=IPI] INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0030529
EMBL:AC006389 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0017070 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
eggNOG:NOG235625 KO:K12627 OMA:NHTVSII CTD:51691 HOVERGEN:HBG105578
OrthoDB:EOG48SGVN EMBL:AF182294 EMBL:BC002742 EMBL:BC022440
IPI:IPI00219871 RefSeq:NP_057284.1 UniGene:Hs.655046
ProteinModelPortal:O95777 SMR:O95777 DIP:DIP-31195N IntAct:O95777
MINT:MINT-1032595 STRING:O95777 PhosphoSite:O95777 PaxDb:O95777
PeptideAtlas:O95777 PRIDE:O95777 Ensembl:ENST00000249299
GeneID:51691 KEGG:hsa:51691 UCSC:uc003vjg.3 GeneCards:GC07P117824
HGNC:HGNC:20471 HPA:HPA020116 MIM:607288 neXtProt:NX_O95777
PharmGKB:PA165618166 InParanoid:O95777 PhylomeDB:O95777
GenomeRNAi:51691 NextBio:55698 ArrayExpress:O95777 Bgee:O95777
CleanEx:HS_LSM8 Genevestigator:O95777 GermOnline:ENSG00000128534
Uniprot:O95777
Length = 96
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 19/66 (28%), Positives = 38/66 (57%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITA-EGRRITKLDQILLNG 72
++ I + VI + +VGTLKGFD +N++L++ E ++ +G L ++ G
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 73 NNIAIL 78
+N+A++
Sbjct: 65 DNVAVI 70
>UNIPROTKB|G4N3U5 [details] [associations]
symbol:MGG_16841 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0003674 "molecular_function"
evidence=ND] INTERPRO:IPR001163 GO:GO:0005730 EMBL:CM001233
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0005732 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 RefSeq:XP_003712525.1
ProteinModelPortal:G4N3U5 EnsemblFungi:MGG_16841T0 GeneID:12985068
KEGG:mgr:MGG_16841 Uniprot:G4N3U5
Length = 95
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 22/78 (28%), Positives = 45/78 (57%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDV--TEY----EITAEGRRIT 63
P L+ + ++V ++GD+EL G L +D + N+VL DV T Y + +E + ++
Sbjct: 12 PFGLVRLLLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETHYIQDEDDESELKTVS 71
Query: 64 -KLDQILLNGNNIAILVP 80
KL+ + + G+++ ++ P
Sbjct: 72 RKLEMLFVRGDSVVMISP 89
>MGI|MGI:1923772 [details] [associations]
symbol:Naa38 "N(alpha)-acetyltransferase 38, NatC auxiliary
subunit" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] MGI:MGI:1923772
INTERPRO:IPR001163 GO:GO:0005634 GO:GO:0008380 GO:GO:0006397
GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920 SUPFAM:SSF50182
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
GeneTree:ENSGT00570000079167 eggNOG:NOG235625 KO:K12627 OMA:NHTVSII
CTD:51691 HOVERGEN:HBG105578 OrthoDB:EOG48SGVN EMBL:AK088664
EMBL:AK167674 EMBL:BC019458 IPI:IPI00263042 RefSeq:NP_598700.1
UniGene:Mm.275158 ProteinModelPortal:Q6ZWM4 SMR:Q6ZWM4
STRING:Q6ZWM4 PhosphoSite:Q6ZWM4 PaxDb:Q6ZWM4 PRIDE:Q6ZWM4
DNASU:76522 Ensembl:ENSMUST00000056398 GeneID:76522 KEGG:mmu:76522
UCSC:uc009bao.1 InParanoid:Q6ZWM4 NextBio:345314 Bgee:Q6ZWM4
Genevestigator:Q6ZWM4 GermOnline:ENSMUSG00000044155 Uniprot:Q6ZWM4
Length = 96
Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
Identities = 19/66 (28%), Positives = 38/66 (57%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITA-EGRRITKLDQILLNG 72
++ I + VI + +VGTLKGFD +N++L++ E ++ +G L ++ G
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 73 NNIAIL 78
+N+A++
Sbjct: 65 DNVAVI 70
>ASPGD|ASPL0000060673 [details] [associations]
symbol:AN10007 species:162425 "Emericella nidulans"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005688 "U6 snRNP" evidence=IEA] [GO:0005732
"small nucleolar ribonucleoprotein complex" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0046540 "U4/U6 x U5
tri-snRNP complex" evidence=IEA] INTERPRO:IPR001163 GO:GO:0005730
EMBL:BN001308 GO:GO:0003676 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0005732 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HOGENOM:HOG000223550 OMA:MVFVRGD EnsemblFungi:CADANIAT00002707
Uniprot:C8VRD4
Length = 96
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 23/80 (28%), Positives = 45/80 (56%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE--YEITAEG------RR 61
P +L+ + ++V ++GD+EL G L +D + N+VL DV E Y + + R
Sbjct: 15 PLDLVRLSLDEIVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDENEQEHIRT 74
Query: 62 ITKLDQIL-LNGNNIAILVP 80
I K +++L + G+++ ++ P
Sbjct: 75 IKKQEEMLFVRGDSVVLISP 94
>DICTYBASE|DDB_G0282863 [details] [associations]
symbol:snrpG "putative small nuclear
ribonucleoprotein G" species:44689 "Dictyostelium discoideum"
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
dictyBase:DDB_G0282863 INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0008380 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0006397 GO:GO:0003723 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
HSSP:O26745 KO:K11099 OMA:VVIMEPK RefSeq:XP_639367.1
ProteinModelPortal:Q54RX0 STRING:Q54RX0 PRIDE:Q54RX0
EnsemblProtists:DDB0233197 GeneID:8623807 KEGG:ddi:DDB_G0282863
eggNOG:NOG244831 Uniprot:Q54RX0
Length = 85
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 17/67 (25%), Positives = 37/67 (55%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + K+ + + G++ + G L+GFD ++N+ L+D E E I +++ GN
Sbjct: 11 LTKLLDKKLAIKLNGNRTVHGILRGFDTFMNIALKDTVEVVSPTEKYEI---GMVIIRGN 67
Query: 74 NIAILVP 80
+I ++ P
Sbjct: 68 SILLMEP 74
>POMBASE|SPAC2F3.17c [details] [associations]
symbol:lsm6 "U6 snRNP-associated protein Lsm6
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005688 "U6 snRNP" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0030490 "maturation of SSU-rRNA" evidence=ISO] [GO:0045292
"mRNA cis splicing, via spliceosome" evidence=ISO] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISO] PomBase:SPAC2F3.17c
INTERPRO:IPR001163 GO:GO:0005737 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003723 GO:GO:0008033
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0030490
GO:GO:0045292 GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 PDB:3SWN PDB:4EMK PDBsum:3SWN
PDBsum:4EMK KO:K12625 OMA:YISTSTK OrthoDB:EOG4CC7B6 PIR:T38534
RefSeq:NP_594380.1 ProteinModelPortal:Q9UUI1 STRING:Q9UUI1
EnsemblFungi:SPAC2F3.17c.1 GeneID:2541997 KEGG:spo:SPAC2F3.17c
HOGENOM:HOG000223542 EvolutionaryTrace:Q9UUI1 NextBio:20803078
Uniprot:Q9UUI1
Length = 75
Score = 88 (36.0 bits), Expect = 0.00035, P = 0.00035
Identities = 18/66 (27%), Positives = 32/66 (48%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P+E +++ IG K+ + + + G L D Y+N+ LE EY G++
Sbjct: 5 PNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEY---VNGKKTNVYGDAF 61
Query: 70 LNGNNI 75
+ GNN+
Sbjct: 62 IRGNNV 67
>UNIPROTKB|A6NHK2 [details] [associations]
symbol:SNRPE "Small nuclear ribonucleoprotein E"
species:9606 "Homo sapiens" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] InterPro:IPR027078 INTERPRO:IPR001163 EMBL:AC114402
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 PANTHER:PTHR11193 HGNC:HGNC:11161 ChiTaRS:SNRPE
EMBL:AC118554 IPI:IPI00647942 ProteinModelPortal:A6NHK2 SMR:A6NHK2
STRING:A6NHK2 PRIDE:A6NHK2 Ensembl:ENST00000367208
HOGENOM:HOG000293268 ArrayExpress:A6NHK2 Bgee:A6NHK2 Uniprot:A6NHK2
Length = 52
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 34 GTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
G + GFD Y+N+VL+D E + R+ +L +I+L G+NI +L
Sbjct: 5 GCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITLL 47
>WB|WBGene00003081 [details] [associations]
symbol:lsm-7 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0042127
"regulation of cell proliferation" evidence=IMP] [GO:0040020
"regulation of meiosis" evidence=IMP] [GO:0008406 "gonad
development" evidence=IMP] [GO:0016477 "cell migration"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
INTERPRO:IPR001163 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0016477 GO:GO:0008406 GO:GO:0002119 GO:GO:0042127
GO:GO:0040020 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:Z69385
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:O29386
eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE InterPro:IPR017132
PIRSF:PIRSF037188 HOGENOM:HOG000223548 GeneTree:ENSGT00510000047872
PIR:T27926 RefSeq:NP_502034.1 ProteinModelPortal:Q23543 SMR:Q23543
IntAct:Q23543 STRING:Q23543 PaxDb:Q23543 EnsemblMetazoa:ZK593.7.1
EnsemblMetazoa:ZK593.7.2 GeneID:177988 KEGG:cel:CELE_ZK593.7
UCSC:ZK593.7 CTD:177988 WormBase:ZK593.7 InParanoid:Q23543
NextBio:899246 Uniprot:Q23543
Length = 104
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY-----EITAEGRRITKLDQI 68
+ R + +I V +G +E G L+GFD +NMVL+D EY + G +L I
Sbjct: 16 LTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDETRQLGLI 75
Query: 69 LLNGNNIAILVP 80
+ G I ++ P
Sbjct: 76 VARGTAITVVSP 87
>UNIPROTKB|Q23543 [details] [associations]
symbol:lsm-7 "Protein LSM-7" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
INTERPRO:IPR001163 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0016477 GO:GO:0008406 GO:GO:0002119 GO:GO:0042127
GO:GO:0040020 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:Z69385
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 HSSP:O29386
eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE InterPro:IPR017132
PIRSF:PIRSF037188 HOGENOM:HOG000223548 GeneTree:ENSGT00510000047872
PIR:T27926 RefSeq:NP_502034.1 ProteinModelPortal:Q23543 SMR:Q23543
IntAct:Q23543 STRING:Q23543 PaxDb:Q23543 EnsemblMetazoa:ZK593.7.1
EnsemblMetazoa:ZK593.7.2 GeneID:177988 KEGG:cel:CELE_ZK593.7
UCSC:ZK593.7 CTD:177988 WormBase:ZK593.7 InParanoid:Q23543
NextBio:899246 Uniprot:Q23543
Length = 104
Score = 87 (35.7 bits), Expect = 0.00045, P = 0.00045
Identities = 23/72 (31%), Positives = 36/72 (50%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY-----EITAEGRRITKLDQI 68
+ R + +I V +G +E G L+GFD +NMVL+D EY + G +L I
Sbjct: 16 LTRFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDETRQLGLI 75
Query: 69 LLNGNNIAILVP 80
+ G I ++ P
Sbjct: 76 VARGTAITVVSP 87
>DICTYBASE|DDB_G0302414 [details] [associations]
symbol:snrpE "small nuclear ribonucleoprotein E"
species:44689 "Dictyostelium discoideum" [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA;ISS] [GO:0046540 "U4/U6 x U5 tri-snRNP complex"
evidence=ISS] [GO:0005685 "U1 snRNP" evidence=ISS] [GO:0000375 "RNA
splicing, via transesterification reactions" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR027078
dictyBase:DDB_G0302414 INTERPRO:IPR001163 GenomeReviews:CM000154_GR
GO:GO:0003676 EMBL:AAFI02000109 GO:GO:0000398 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0046540 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 GO:GO:0005685 KO:K11097 PANTHER:PTHR11193 OMA:VQIWLYE
RefSeq:XP_002649120.1 EnsemblProtists:DDB0302415 GeneID:8626537
KEGG:ddi:DDB_G0302414 Uniprot:C7G054
Length = 92
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILV 79
+I + D + G + G D Y+N+VL++ +E I + ++ L QILL G+NI++++
Sbjct: 28 QIMLFENTDIRIQGVIIGLDEYMNLVLDNASELSIKKKTKK--PLGQILLKGDNISLVL 84
>DICTYBASE|DDB_G0289499 [details] [associations]
symbol:lsm7 "putative U6 small nuclear
ribonucleoparticle-associated protein" species:44689 "Dictyostelium
discoideum" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=ISS] [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005688 "U6 snRNP" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] dictyBase:DDB_G0289499
INTERPRO:IPR001163 GO:GO:0005730 GenomeReviews:CM000154_GR
GO:GO:0003723 EMBL:AAFI02000141 GO:GO:0006402 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0005732
GO:GO:0005688 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
RefSeq:XP_636181.1 HSSP:O29386 ProteinModelPortal:Q54HF6
STRING:Q54HF6 EnsemblProtists:DDB0233196 GeneID:8627168
KEGG:ddi:DDB_G0289499 eggNOG:NOG276686 KO:K12626 OMA:VLDNTVE
InterPro:IPR017132 PIRSF:PIRSF037188 Uniprot:Q54HF6
Length = 97
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 22/78 (28%), Positives = 40/78 (51%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK-----LDQI 68
+ + +G +I V G +E+ G LKG+D VN+ L+ E+ AE IT L +
Sbjct: 15 LQKFLGKEICVKFTGGREVQGILKGYDQLVNITLDQTQEFIRDAEDPLITTDEKRFLGLV 74
Query: 69 LLNGNNIAILVPGGSPDP 86
+ G+++ ++ P +P
Sbjct: 75 VCRGSSVMMVCPTEGCEP 92
>DICTYBASE|DDB_G0279837 [details] [associations]
symbol:lsm1 "LSM (like-Sm) domain-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0006402 "mRNA
catabolic process" evidence=ISS] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISS] [GO:0000339 "RNA cap binding" evidence=ISS]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
dictyBase:DDB_G0279837 INTERPRO:IPR001163 GO:GO:0005634
GO:GO:0008380 GenomeReviews:CM000152_GR GO:GO:0006397 GO:GO:0000932
GO:GO:0006402 InterPro:IPR010920 SUPFAM:SSF50182 EMBL:AAFI02000033
Pfam:PF01423 GO:GO:0000339 InterPro:IPR006649 SMART:SM00651
KO:K12620 OMA:IERIHVG RefSeq:XP_641509.1 HSSP:O26745
ProteinModelPortal:Q54W83 STRING:Q54W83 EnsemblProtists:DDB0233402
GeneID:8622249 KEGG:ddi:DDB_G0279837 eggNOG:COG1958
ProtClustDB:CLSZ2430662 Uniprot:Q54W83
Length = 129
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 18/70 (25%), Positives = 36/70 (51%)
Query: 18 IGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI 77
+ K+ V+++ ++ +G ++ FD + N+VL+D E + L + G+N+ I
Sbjct: 9 VDKKLIVVLRDGRKFIGIMRTFDQFANIVLQDTIERIYVGDCYSDKNLGLFFIRGDNVVI 68
Query: 78 LVPGGSPDPE 87
L G DP+
Sbjct: 69 L---GEIDPD 75
>UNIPROTKB|Q3ZBL0 [details] [associations]
symbol:SNRPG "Small nuclear ribonucleoprotein G"
species:9913 "Bos taurus" [GO:0005683 "U7 snRNP" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
INTERPRO:IPR001163 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
GO:GO:0003723 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
HOVERGEN:HBG000513 OrthoDB:EOG4BRWND KO:K11099 EMBL:BC103236
IPI:IPI00688337 RefSeq:NP_001035633.1 UniGene:Bt.70615
ProteinModelPortal:Q3ZBL0 SMR:Q3ZBL0 STRING:Q3ZBL0 PRIDE:Q3ZBL0
Ensembl:ENSBTAT00000007241 GeneID:522621 KEGG:bta:522621 CTD:6637
GeneTree:ENSGT00510000046985 InParanoid:Q3ZBL0 OMA:ESVEMAP
NextBio:20873564 Uniprot:Q3ZBL0
Length = 76
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 19/73 (26%), Positives = 43/73 (58%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
S+ P EL + + K+ + + G + + G L+GFD ++N+V+++ E + G++ +
Sbjct: 2 SKAHPPEL-KKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE--MATSGQQ-NNI 57
Query: 66 DQILLNGNNIAIL 78
+++ GN+I +L
Sbjct: 58 GMVVIRGNSIIML 70
>UNIPROTKB|J9NSG1 [details] [associations]
symbol:J9NSG1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
InterPro:IPR027078 INTERPRO:IPR001163 InterPro:IPR010920
SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
PANTHER:PTHR11193 GeneTree:ENSGT00390000012818 EMBL:AAEX03005975
Ensembl:ENSCAFT00000028242 OMA:CLHRITL Uniprot:J9NSG1
Length = 92
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 17/58 (29%), Positives = 36/58 (62%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
++W+ + + ++ G + GF Y+++VL+D E+ + R+ +L I+L G+NI +L
Sbjct: 32 QMWLYKQVNMQIEGCIIGFVEYMDLVLDDAKEFHSKTKSRK--QLGWIMLKGDNITLL 87
>UNIPROTKB|P62308 [details] [associations]
symbol:SNRPG "Small nuclear ribonucleoprotein G"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=NAS]
[GO:0005681 "spliceosomal complex" evidence=TAS] [GO:0008380 "RNA
splicing" evidence=TAS] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=NAS] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0005683 "U7 snRNP"
evidence=IDA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0000387 "spliceosomal snRNP assembly"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006366 "transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006369 "termination of
RNA polymerase II transcription" evidence=TAS] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0008334 "histone mRNA metabolic
process" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0034660
"ncRNA metabolic process" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_71 Reactome:REACT_21257
INTERPRO:IPR001163 GO:GO:0005829 EMBL:CH471053 GO:GO:0005654
Reactome:REACT_1675 GO:GO:0003723 GO:GO:0000387 GO:GO:0034660
GO:GO:0071013 InterPro:IPR010920 SUPFAM:SSF50182
Reactome:REACT_1788 GO:GO:0000245 GO:GO:0006369 Reactome:REACT_78
GO:GO:0005689 PDB:3S6N PDBsum:3S6N Pfam:PF01423 GO:GO:0008334
GO:GO:0005683 InterPro:IPR006649 SMART:SM00651 HOVERGEN:HBG000513
PDB:2Y9A PDB:2Y9B PDB:2Y9C PDB:2Y9D PDB:3CW1 PDB:3PGW PDBsum:2Y9A
PDBsum:2Y9B PDBsum:2Y9C PDBsum:2Y9D PDBsum:3CW1 PDBsum:3PGW
UniGene:Hs.631639 KO:K11099 CTD:6637 OMA:ESVEMAP EMBL:X85373
EMBL:CR456918 EMBL:AC079338 EMBL:BC000070 EMBL:BC022432
EMBL:BC066302 EMBL:BC070166 EMBL:BC071880 EMBL:BC106055
IPI:IPI00016572 PIR:S55054 RefSeq:NP_003087.1 UniGene:Hs.465167
UniGene:Hs.516076 UniGene:Hs.654528 ProteinModelPortal:P62308
SMR:P62308 DIP:DIP-34627N IntAct:P62308 MINT:MINT-1527983
STRING:P62308 PhosphoSite:P62308 DMDM:59800216 PeptideAtlas:P62308
PRIDE:P62308 DNASU:6637 Ensembl:ENST00000272348 GeneID:6637
KEGG:hsa:6637 UCSC:uc002sgp.3 GeneCards:GC02M070508 HGNC:HGNC:11163
MIM:603542 neXtProt:NX_P62308 PharmGKB:PA36004 InParanoid:P62308
PhylomeDB:P62308 ChiTaRS:SNRPG EvolutionaryTrace:P62308
GenomeRNAi:6637 NextBio:25857 ArrayExpress:P62308 Bgee:P62308
CleanEx:HS_SNRPG Genevestigator:P62308 GermOnline:ENSG00000143977
Uniprot:P62308
Length = 76
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 19/73 (26%), Positives = 43/73 (58%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
S+ P EL + + K+ + + G + + G L+GFD ++N+V+++ E + G++ +
Sbjct: 2 SKAHPPEL-KKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE--MATSGQQ-NNI 57
Query: 66 DQILLNGNNIAIL 78
+++ GN+I +L
Sbjct: 58 GMVVIRGNSIIML 70
>UNIPROTKB|F2Z5V2 [details] [associations]
symbol:LOC100525867 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0005683 "U7 snRNP" evidence=IEA]
INTERPRO:IPR001163 InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 KO:K11099
GeneTree:ENSGT00510000046985 OMA:ESVEMAP EMBL:FP476045
RefSeq:XP_003125100.1 UniGene:Ssc.27001 ProteinModelPortal:F2Z5V2
SMR:F2Z5V2 PRIDE:F2Z5V2 Ensembl:ENSSSCT00000031595 GeneID:100525867
KEGG:ssc:100525867 Uniprot:F2Z5V2
Length = 76
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 19/73 (26%), Positives = 43/73 (58%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
S+ P EL + + K+ + + G + + G L+GFD ++N+V+++ E + G++ +
Sbjct: 2 SKAHPPEL-KKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE--MATSGQQ-NNI 57
Query: 66 DQILLNGNNIAIL 78
+++ GN+I +L
Sbjct: 58 GMVVIRGNSIIML 70
>RGD|1584713 [details] [associations]
symbol:Snrpg "small nuclear ribonucleoprotein polypeptide G"
species:10116 "Rattus norvegicus" [GO:0005683 "U7 snRNP"
evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] RGD:1584713 INTERPRO:IPR001163 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:CH473957 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:COG1958 HOVERGEN:HBG000513 OrthoDB:EOG4BRWND
KO:K11099 CTD:6637 GeneTree:ENSGT00510000046985 OMA:ESVEMAP
EMBL:BC168750 IPI:IPI00211261 RefSeq:NP_001128557.1
RefSeq:XP_001079708.1 RefSeq:XP_003748887.1 UniGene:Rn.2397
SMR:B5DEP7 STRING:B5DEP7 Ensembl:ENSRNOT00000022367 GeneID:681031
GeneID:687679 KEGG:rno:681031 KEGG:rno:687679 UCSC:RGD:1584713
RGD:2321722 NextBio:720014 Genevestigator:B5DEP7 Uniprot:B5DEP7
Length = 76
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 19/73 (26%), Positives = 43/73 (58%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
S+ P EL + + K+ + + G + + G L+GFD ++N+V+++ E + G++ +
Sbjct: 2 SKAHPPEL-KKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVE--MATSGQQ-NNI 57
Query: 66 DQILLNGNNIAIL 78
+++ GN+I +L
Sbjct: 58 GMVVIRGNSIIML 70
>WB|WBGene00003076 [details] [associations]
symbol:lsm-1 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] INTERPRO:IPR001163
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0000932
InterPro:IPR010920 SUPFAM:SSF50182 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 eggNOG:NOG236501 GeneTree:ENSGT00570000079167
HOGENOM:HOG000223544 KO:K12620 EMBL:Z69302 PIR:T22035
RefSeq:NP_496385.1 HSSP:Q8ZYG5 ProteinModelPortal:Q20229 SMR:Q20229
STRING:Q20229 PaxDb:Q20229 EnsemblMetazoa:F40F8.9 GeneID:174700
KEGG:cel:CELE_F40F8.9 UCSC:F40F8.9 CTD:174700 WormBase:F40F8.9
InParanoid:Q20229 OMA:YYSEISH NextBio:885130 Uniprot:Q20229
Length = 125
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 19/74 (25%), Positives = 38/74 (51%)
Query: 5 PSQLLPSEL-IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
P LP + + + K+ V+++ ++L+G L+ D + N++LEDV E + T
Sbjct: 4 PDPYLPGAISLFEQLDKKLLVVLRDGRKLIGFLRSIDQFANLILEDVVERTFVEKYFCET 63
Query: 64 KLDQILLNGNNIAI 77
+L+ G N+ +
Sbjct: 64 GQGFMLIRGENVEL 77
>SGD|S000004265 [details] [associations]
symbol:SMD2 "Core Sm protein Sm D2" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0003674
"molecular_function" evidence=ND] [GO:0030532 "small nuclear
ribonucleoprotein complex" evidence=IEA] [GO:0005682 "U5 snRNP"
evidence=IDA] [GO:0005685 "U1 snRNP" evidence=IDA] [GO:0046540
"U4/U6 x U5 tri-snRNP complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IPI] InterPro:IPR027248
SGD:S000004265 INTERPRO:IPR001163 GO:GO:0005682 EMBL:BK006945
GO:GO:0003723 GO:GO:0000398 InterPro:IPR010920 SUPFAM:SSF50182
GO:GO:0046540 GO:GO:0071004 EMBL:U17245 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 GO:GO:0005685
HOGENOM:HOG000223545 KO:K11096 PANTHER:PTHR12777
GeneTree:ENSGT00390000017608 OMA:VKELWTE OrthoDB:EOG43247T
PIR:S69326 RefSeq:NP_013377.1 ProteinModelPortal:Q06217 SMR:Q06217
DIP:DIP-1421N IntAct:Q06217 MINT:MINT-368970 STRING:Q06217
PaxDb:Q06217 PRIDE:Q06217 EnsemblFungi:YLR275W GeneID:850981
KEGG:sce:YLR275W CYGD:YLR275w NextBio:967495 Genevestigator:Q06217
GermOnline:YLR275W Uniprot:Q06217
Length = 110
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 17/81 (20%), Positives = 44/81 (54%)
Query: 3 HNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRI 62
H P L+ ++ R + + + ++ + +++ +K FD + NMVLE+V E +G+ +
Sbjct: 28 HGPMSLINDAMVTR---TPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTEKKGKNV 84
Query: 63 TK----LDQILLNGNNIAILV 79
+ ++ L G+++ +++
Sbjct: 85 INRERFISKLFLRGDSVIVVL 105
>SGD|S000005685 [details] [associations]
symbol:SME1 "Core Sm protein Sm E" species:4932
"Saccharomyces cerevisiae" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA;IPI] [GO:0005682 "U5 snRNP" evidence=IDA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0071004
"U2-type prespliceosome" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0005685 "U1 snRNP" evidence=IDA]
[GO:0046540 "U4/U6 x U5 tri-snRNP complex" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IEA] InterPro:IPR027078
SGD:S000005685 INTERPRO:IPR001163 GO:GO:0005737 EMBL:BK006948
GO:GO:0005682 GO:GO:0003723 GO:GO:0000398 InterPro:IPR010920
SUPFAM:SSF50182 GO:GO:0046540 GO:GO:0071004 EMBL:U55020
Pfam:PF01423 InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958
GO:GO:0005685 RefSeq:NP_014804.3 GeneID:854332 KEGG:sce:YOR161C
RefSeq:NP_014802.3 GeneID:854330 KEGG:sce:YOR159C KO:K11097
PANTHER:PTHR11193 GeneTree:ENSGT00390000012818 HOGENOM:HOG000223543
OMA:VQIWLYE OrthoDB:EOG49GPSD EMBL:X92449 EMBL:Z75067 EMBL:AY558029
PIR:S67047 ProteinModelPortal:Q12330 SMR:Q12330 DIP:DIP-1633N
IntAct:Q12330 MINT:MINT-396862 STRING:Q12330 PaxDb:Q12330
EnsemblFungi:YOR159C CYGD:YOR159c NextBio:976384
Genevestigator:Q12330 GermOnline:YOR159C Uniprot:Q12330
Length = 94
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 19/62 (30%), Positives = 38/62 (61%)
Query: 22 IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEI-TAEGR----RITKLDQILLNGNNIA 76
IW+ + + G + GFD ++N+V+++ E + +A+G+ + T L +ILL G+NI
Sbjct: 29 IWLFEQIGIRIKGKIVGFDEFMNVVIDEAVEIPVNSADGKEDVEKGTPLGKILLKGDNIT 88
Query: 77 IL 78
++
Sbjct: 89 LI 90
>TAIR|locus:2080777 [details] [associations]
symbol:AT3G11500 "AT3G11500" species:3702 "Arabidopsis
thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
"nucleus" evidence=ISM;ISS] [GO:0005732 "small nucleolar
ribonucleoprotein complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
INTERPRO:IPR001163 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0005730 GO:GO:0003676 GO:GO:0030529 InterPro:IPR010920
SUPFAM:SSF50182 EMBL:AC008153 Pfam:PF01423 InterPro:IPR006649
SMART:SM00651 HSSP:O29386 HOGENOM:HOG000223546 KO:K11099
ProtClustDB:CLSN2683015 EMBL:AY062818 EMBL:BT001203 IPI:IPI00542169
RefSeq:NP_187757.1 UniGene:At.27222 ProteinModelPortal:Q9CAX7
SMR:Q9CAX7 STRING:Q9CAX7 PRIDE:Q9CAX7 DNASU:820323
EnsemblPlants:AT3G11500.1 GeneID:820323 KEGG:ath:AT3G11500
TAIR:At3g11500 InParanoid:Q9CAX7 OMA:NIGMVEI PhylomeDB:Q9CAX7
ArrayExpress:Q9CAX7 Genevestigator:Q9CAX7 Uniprot:Q9CAX7
Length = 79
Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
Identities = 17/66 (25%), Positives = 41/66 (62%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P +L + + K+ + + ++ +VGTL+GFD ++N+V+++ E + + + T + ++
Sbjct: 7 PPDL-KKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVE--VNGDDK--TDIGMVV 61
Query: 70 LNGNNI 75
+ GN+I
Sbjct: 62 IRGNSI 67
>CGD|CAL0004008 [details] [associations]
symbol:orf19.7290 species:5476 "Candida albicans" [GO:0000339
"RNA cap binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005845 "mRNA cap binding complex" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA] [GO:0000290 "deadenylation-dependent decapping
of nuclear-transcribed mRNA" evidence=IEA] CGD:CAL0004008
INTERPRO:IPR001163 InterPro:IPR010920 SUPFAM:SSF50182
EMBL:AACQ01000069 Pfam:PF01423 InterPro:IPR006649 SMART:SM00651
KO:K12620 eggNOG:COG1958 RefSeq:XP_716425.1
ProteinModelPortal:Q5A417 STRING:Q5A417 GeneID:3641913
KEGG:cal:CaO19.7290 Uniprot:Q5A417
Length = 167
Score = 86 (35.3 bits), Expect = 0.00085, P = 0.00085
Identities = 20/67 (29%), Positives = 36/67 (53%)
Query: 18 IGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE-YEITAEGRRITKLDQ-----ILLN 71
+ KI+V++K + L G L+ FD + N+VL+D E + EG T+ + ++
Sbjct: 41 VDRKIFVLLKDGRNLFGILRTFDQFANLVLQDTLERIYLGEEGEAPTRFSETYRGVFMVR 100
Query: 72 GNNIAIL 78
G N+ +L
Sbjct: 101 GENVVML 107
>DICTYBASE|DDB_G0285395 [details] [associations]
symbol:snrpD2 "putative small nuclear
ribonucleoprotein D2" species:44689 "Dictyostelium discoideum"
[GO:0030532 "small nuclear ribonucleoprotein complex"
evidence=IEA;ISS] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISS] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR027248 dictyBase:DDB_G0285395 INTERPRO:IPR001163
GenomeReviews:CM000153_GR EMBL:AAFI02000079 GO:GO:0000398
InterPro:IPR010920 SUPFAM:SSF50182 GO:GO:0030532 Pfam:PF01423
InterPro:IPR006649 SMART:SM00651 eggNOG:COG1958 KO:K11096
PANTHER:PTHR12777 OMA:VKELWTE RefSeq:XP_638255.1 HSSP:P62316
ProteinModelPortal:Q54NC5 SMR:Q54NC5 STRING:Q54NC5
EnsemblProtists:DDB0233193 GeneID:8625063 KEGG:ddi:DDB_G0285395
Uniprot:Q54NC5
Length = 112
Score = 84 (34.6 bits), Expect = 0.00093, P = 0.00093
Identities = 22/78 (28%), Positives = 48/78 (61%)
Query: 20 SKIWVIMKGDKELVGTLKGFDVYVNMVLEDV----TEYEITAEGRRITK-------LDQI 68
+++ + ++ +K+L+G ++ FD + NMVLE+V TE TA+G++ K + ++
Sbjct: 31 TQVLINVRNNKKLLGRVRAFDRHCNMVLENVKEIWTEVPKTAKGKKKAKPINKDRFISKM 90
Query: 69 LLNGNNIAILV--PGGSP 84
L G+++ +++ P G+P
Sbjct: 91 FLRGDSVILVLKNPLGAP 108
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.140 0.408 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 87 87 0.00091 102 3 11 22 0.37 30
29 0.48 30
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 89
No. of states in DFA: 552 (59 KB)
Total size of DFA: 106 KB (2072 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 9.06u 0.17s 9.23t Elapsed: 00:00:01
Total cpu time: 9.06u 0.17s 9.23t Elapsed: 00:00:01
Start: Fri May 10 08:29:56 2013 End: Fri May 10 08:29:57 2013