BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041342
(87 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|388498294|gb|AFK37213.1| unknown [Medicago truncatula]
Length = 87
Score = 174 bits (441), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 85/87 (97%), Positives = 87/87 (100%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
MA+NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTL+GFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
Query: 61 RITKLDQILLNGNNIAILVPGGSPDPE 87
RITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 61 RITKLDQILLNGNNIAILVPGGSPDPE 87
>gi|388507376|gb|AFK41754.1| unknown [Lotus japonicus]
Length = 87
Score = 174 bits (440), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 85/87 (97%), Positives = 86/87 (98%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
MA NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTL+GFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1 MASNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
Query: 61 RITKLDQILLNGNNIAILVPGGSPDPE 87
RITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 61 RITKLDQILLNGNNIAILVPGGSPDPE 87
>gi|313586491|gb|ADR71256.1| U6 snRNA-associated Sm-like protein LSm5 [Hevea brasiliensis]
Length = 87
Score = 174 bits (440), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 84/87 (96%), Positives = 87/87 (100%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
MA+NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTL+GFDVYVNMVLEDVTEYE+TAEGR
Sbjct: 1 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEVTAEGR 60
Query: 61 RITKLDQILLNGNNIAILVPGGSPDPE 87
RITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 61 RITKLDQILLNGNNIAILVPGGSPDPE 87
>gi|449468622|ref|XP_004152020.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Cucumis
sativus]
gi|449522508|ref|XP_004168268.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Cucumis
sativus]
Length = 87
Score = 174 bits (440), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 85/87 (97%), Positives = 86/87 (98%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
MA NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTL+GFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1 MATNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
Query: 61 RITKLDQILLNGNNIAILVPGGSPDPE 87
RITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 61 RITKLDQILLNGNNIAILVPGGSPDPE 87
>gi|225433436|ref|XP_002285668.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 1
[Vitis vinifera]
gi|297741927|emb|CBI33362.3| unnamed protein product [Vitis vinifera]
Length = 87
Score = 171 bits (433), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 83/87 (95%), Positives = 86/87 (98%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
M+ NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTL+GFDVYVNMVLEDVTEYEIT+EGR
Sbjct: 1 MSTNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEGR 60
Query: 61 RITKLDQILLNGNNIAILVPGGSPDPE 87
RITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 61 RITKLDQILLNGNNIAILVPGGSPDPE 87
>gi|356524941|ref|XP_003531086.1| PREDICTED: uncharacterized protein LOC100306359 [Glycine max]
gi|255628297|gb|ACU14493.1| unknown [Glycine max]
Length = 87
Score = 170 bits (431), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 83/87 (95%), Positives = 86/87 (98%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
MA+NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTL+GFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGR 60
Query: 61 RITKLDQILLNGNNIAILVPGGSPDPE 87
RITKLDQILLNGNNIAILVPGGSP+ E
Sbjct: 61 RITKLDQILLNGNNIAILVPGGSPESE 87
>gi|224059779|ref|XP_002299989.1| predicted protein [Populus trichocarpa]
gi|224103927|ref|XP_002313247.1| predicted protein [Populus trichocarpa]
gi|118484238|gb|ABK93999.1| unknown [Populus trichocarpa]
gi|222847247|gb|EEE84794.1| predicted protein [Populus trichocarpa]
gi|222849655|gb|EEE87202.1| predicted protein [Populus trichocarpa]
Length = 88
Score = 170 bits (430), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 83/84 (98%), Positives = 84/84 (100%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTL+GFDVYVNMVLEDVTEYEITAEGRRIT
Sbjct: 5 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITAEGRRIT 64
Query: 64 KLDQILLNGNNIAILVPGGSPDPE 87
KLDQILLNGNNIAILVPGGSPDPE
Sbjct: 65 KLDQILLNGNNIAILVPGGSPDPE 88
>gi|356512167|ref|XP_003524792.1| PREDICTED: uncharacterized protein LOC100527929 [Glycine max]
gi|255633598|gb|ACU17158.1| unknown [Glycine max]
Length = 87
Score = 169 bits (428), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 82/87 (94%), Positives = 85/87 (97%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
MA+NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTL+GFDVY NMVLEDVTEYEITAEGR
Sbjct: 1 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYANMVLEDVTEYEITAEGR 60
Query: 61 RITKLDQILLNGNNIAILVPGGSPDPE 87
RITKLDQILLNGNNIAILVPGGSP+ E
Sbjct: 61 RITKLDQILLNGNNIAILVPGGSPESE 87
>gi|359477805|ref|XP_003632024.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 2
[Vitis vinifera]
Length = 88
Score = 167 bits (422), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 83/88 (94%), Positives = 86/88 (97%), Gaps = 1/88 (1%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY-EITAEG 59
M+ NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTL+GFDVYVNMVLEDVTEY EIT+EG
Sbjct: 1 MSTNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYSEITSEG 60
Query: 60 RRITKLDQILLNGNNIAILVPGGSPDPE 87
RRITKLDQILLNGNNIAILVPGGSPDPE
Sbjct: 61 RRITKLDQILLNGNNIAILVPGGSPDPE 88
>gi|110739170|dbj|BAF01501.1| Sm-like protein [Arabidopsis thaliana]
Length = 88
Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/85 (95%), Positives = 84/85 (98%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
MA+NPSQLLPSELIDRCIGSKIWVIMKGDKELVG LKGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGR 60
Query: 61 RITKLDQILLNGNNIAILVPGGSPD 85
R+TKLDQILLNGNNIAILVPGGSP+
Sbjct: 61 RVTKLDQILLNGNNIAILVPGGSPE 85
>gi|15239727|ref|NP_199698.1| U6 snRNA-associated Sm-like protein LSm5 [Arabidopsis thaliana]
gi|9758886|dbj|BAB09440.1| U6 snRNA-associated Sm-like protein-like [Arabidopsis thaliana]
gi|16554971|gb|AAK61592.1| Sm-like protein [Arabidopsis thaliana]
gi|106879147|gb|ABF82603.1| At5g48870 [Arabidopsis thaliana]
gi|332008352|gb|AED95735.1| U6 snRNA-associated Sm-like protein LSm5 [Arabidopsis thaliana]
gi|386305005|gb|AFJ05005.1| hypothetical protein [Arabidopsis thaliana]
Length = 88
Score = 166 bits (421), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 81/85 (95%), Positives = 84/85 (98%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
MA+NPSQLLPSELIDRCIGSKIWVIMKGDKELVG LKGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1 MANNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGR 60
Query: 61 RITKLDQILLNGNNIAILVPGGSPD 85
R+TKLDQILLNGNNIAILVPGGSP+
Sbjct: 61 RVTKLDQILLNGNNIAILVPGGSPE 85
>gi|297792081|ref|XP_002863925.1| hypothetical protein ARALYDRAFT_917817 [Arabidopsis lyrata subsp.
lyrata]
gi|297309760|gb|EFH40184.1| hypothetical protein ARALYDRAFT_917817 [Arabidopsis lyrata subsp.
lyrata]
Length = 88
Score = 166 bits (420), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 81/85 (95%), Positives = 83/85 (97%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
MA NPSQLLPSELIDRCIGSKIWVIMKGDKELVG LKGFDVYVNMVLEDVTEYEITAEGR
Sbjct: 1 MASNPSQLLPSELIDRCIGSKIWVIMKGDKELVGILKGFDVYVNMVLEDVTEYEITAEGR 60
Query: 61 RITKLDQILLNGNNIAILVPGGSPD 85
R+TKLDQILLNGNNIAILVPGGSP+
Sbjct: 61 RVTKLDQILLNGNNIAILVPGGSPE 85
>gi|116779179|gb|ABK21171.1| unknown [Picea sitchensis]
gi|116779217|gb|ABK21184.1| unknown [Picea sitchensis]
gi|224285498|gb|ACN40469.1| unknown [Picea sitchensis]
Length = 85
Score = 164 bits (416), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 79/85 (92%), Positives = 83/85 (97%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
M+HNPS LLPSELIDRCIGSKIWVIMKGDKELVGTL+GFDVYVNMVLEDVTEYEIT+EGR
Sbjct: 1 MSHNPSHLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEGR 60
Query: 61 RITKLDQILLNGNNIAILVPGGSPD 85
RITKLDQILLNGNNIAILVPGG P+
Sbjct: 61 RITKLDQILLNGNNIAILVPGGGPE 85
>gi|302771065|ref|XP_002968951.1| hypothetical protein SELMODRAFT_90525 [Selaginella
moellendorffii]
gi|302816639|ref|XP_002989998.1| hypothetical protein SELMODRAFT_130618 [Selaginella
moellendorffii]
gi|300142309|gb|EFJ09011.1| hypothetical protein SELMODRAFT_130618 [Selaginella
moellendorffii]
gi|300163456|gb|EFJ30067.1| hypothetical protein SELMODRAFT_90525 [Selaginella
moellendorffii]
Length = 85
Score = 164 bits (416), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 79/85 (92%), Positives = 84/85 (98%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTL+GFDVYVNMVLEDVTEYEIT +G+
Sbjct: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITPDGK 60
Query: 61 RITKLDQILLNGNNIAILVPGGSPD 85
RITKLDQILLNGNNIAILVPGG+P+
Sbjct: 61 RITKLDQILLNGNNIAILVPGGAPE 85
>gi|413949490|gb|AFW82139.1| SAD1 [Zea mays]
Length = 137
Score = 161 bits (408), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 79/82 (96%), Positives = 80/82 (97%)
Query: 3 HNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRI 62
+NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTL GFDVYVNMVLEDVTEYE TAEGRRI
Sbjct: 53 NNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEGRRI 112
Query: 63 TKLDQILLNGNNIAILVPGGSP 84
TKLDQILLNGNNIAILVPGGSP
Sbjct: 113 TKLDQILLNGNNIAILVPGGSP 134
>gi|115463665|ref|NP_001055432.1| Os05g0389300 [Oryza sativa Japonica Group]
gi|357133866|ref|XP_003568543.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Brachypodium distachyon]
gi|54287604|gb|AAV31348.1| putative snRNA associated protein [Oryza sativa Japonica Group]
gi|113578983|dbj|BAF17346.1| Os05g0389300 [Oryza sativa Japonica Group]
gi|215765216|dbj|BAG86913.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218196723|gb|EEC79150.1| hypothetical protein OsI_19819 [Oryza sativa Indica Group]
gi|222622229|gb|EEE56361.1| hypothetical protein OsJ_05491 [Oryza sativa Japonica Group]
Length = 89
Score = 160 bits (404), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/82 (96%), Positives = 80/82 (97%)
Query: 3 HNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRI 62
+NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTL GFDVYVNMVLEDVTEYE TAEGRRI
Sbjct: 4 NNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEGRRI 63
Query: 63 TKLDQILLNGNNIAILVPGGSP 84
TKLDQILLNGNNIAILVPGGSP
Sbjct: 64 TKLDQILLNGNNIAILVPGGSP 85
>gi|226504910|ref|NP_001152573.1| SAD1 [Zea mays]
gi|226528898|ref|NP_001149693.1| SAD1 [Zea mays]
gi|242090409|ref|XP_002441037.1| hypothetical protein SORBIDRAFT_09g019200 [Sorghum bicolor]
gi|194697624|gb|ACF82896.1| unknown [Zea mays]
gi|195606068|gb|ACG24864.1| SAD1 [Zea mays]
gi|195609070|gb|ACG26365.1| SAD1 [Zea mays]
gi|195629524|gb|ACG36403.1| SAD1 [Zea mays]
gi|195638676|gb|ACG38806.1| SAD1 [Zea mays]
gi|195657645|gb|ACG48290.1| SAD1 [Zea mays]
gi|241946322|gb|EES19467.1| hypothetical protein SORBIDRAFT_09g019200 [Sorghum bicolor]
gi|413945216|gb|AFW77865.1| SAD1 isoform 1 [Zea mays]
gi|413945217|gb|AFW77866.1| SAD1 isoform 2 [Zea mays]
gi|413949491|gb|AFW82140.1| SAD1 [Zea mays]
Length = 88
Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 79/82 (96%), Positives = 80/82 (97%)
Query: 3 HNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRI 62
+NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTL GFDVYVNMVLEDVTEYE TAEGRRI
Sbjct: 4 NNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEGRRI 63
Query: 63 TKLDQILLNGNNIAILVPGGSP 84
TKLDQILLNGNNIAILVPGGSP
Sbjct: 64 TKLDQILLNGNNIAILVPGGSP 85
>gi|168009596|ref|XP_001757491.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691185|gb|EDQ77548.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 86
Score = 159 bits (402), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 78/86 (90%), Positives = 83/86 (96%), Gaps = 1/86 (1%)
Query: 1 MAHN-PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEG 59
MAHN PS L+PSELIDRCIGSKIWVIMKGDKELVGTL+GFDVYVNMVLEDVTEYEIT+EG
Sbjct: 1 MAHNNPSHLMPSELIDRCIGSKIWVIMKGDKELVGTLRGFDVYVNMVLEDVTEYEITSEG 60
Query: 60 RRITKLDQILLNGNNIAILVPGGSPD 85
RRITKL+QILLNGNNIAILVPGG P+
Sbjct: 61 RRITKLEQILLNGNNIAILVPGGGPE 86
>gi|303271251|ref|XP_003054987.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226462961|gb|EEH60239.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 88
Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/87 (82%), Positives = 82/87 (94%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
MA NPSQLLPSEL+DRC+GS+IWVIMKG+KE+VGTL+GFDVYVNMVLEDV EYE+T EG+
Sbjct: 1 MATNPSQLLPSELVDRCVGSRIWVIMKGEKEMVGTLRGFDVYVNMVLEDVIEYEMTPEGK 60
Query: 61 RITKLDQILLNGNNIAILVPGGSPDPE 87
R+TKLDQILLNGNNIA+LVPGG PD E
Sbjct: 61 RVTKLDQILLNGNNIALLVPGGMPDEE 87
>gi|255080076|ref|XP_002503618.1| predicted protein [Micromonas sp. RCC299]
gi|226518885|gb|ACO64876.1| predicted protein [Micromonas sp. RCC299]
Length = 88
Score = 150 bits (380), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 70/85 (82%), Positives = 80/85 (94%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
MA NPSQLLPSEL+D+C+GS+IWVIMKG+KE+VGTL+GFDVYVNMVLEDV EYE+T EGR
Sbjct: 1 MATNPSQLLPSELVDKCVGSRIWVIMKGEKEMVGTLRGFDVYVNMVLEDVIEYEMTPEGR 60
Query: 61 RITKLDQILLNGNNIAILVPGGSPD 85
R TKLDQILLNGNNIA+LVPGG P+
Sbjct: 61 RETKLDQILLNGNNIALLVPGGMPE 85
>gi|159474956|ref|XP_001695589.1| Sm-E protein [Chlamydomonas reinhardtii]
gi|158275600|gb|EDP01376.1| Sm-E protein [Chlamydomonas reinhardtii]
Length = 95
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/84 (83%), Positives = 77/84 (91%)
Query: 2 AHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRR 61
A NPS LLPSELIDRCIGSK+WVIMKGDKE+VGTL+GFDVYVNMVLEDVTE E T EG++
Sbjct: 10 AGNPSHLLPSELIDRCIGSKMWVIMKGDKEIVGTLRGFDVYVNMVLEDVTEIEDTPEGKK 69
Query: 62 ITKLDQILLNGNNIAILVPGGSPD 85
+TKLDQILLNGNNIA+LVPG PD
Sbjct: 70 LTKLDQILLNGNNIAMLVPGAKPD 93
>gi|302837345|ref|XP_002950232.1| hypothetical protein VOLCADRAFT_109070 [Volvox carteri f.
nagariensis]
gi|300264705|gb|EFJ48900.1| hypothetical protein VOLCADRAFT_109070 [Volvox carteri f.
nagariensis]
Length = 95
Score = 145 bits (365), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 69/82 (84%), Positives = 77/82 (93%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
NPS LLPSELIDRCIGS++WVIMKGDKE+VGTL+GFDVYVNMVLEDVTE E + EG+++T
Sbjct: 12 NPSHLLPSELIDRCIGSRMWVIMKGDKEIVGTLRGFDVYVNMVLEDVTEIEDSPEGKKLT 71
Query: 64 KLDQILLNGNNIAILVPGGSPD 85
KLDQILLNGNNIAILVPGG PD
Sbjct: 72 KLDQILLNGNNIAILVPGGKPD 93
>gi|384249954|gb|EIE23434.1| Sm-E protein [Coccomyxa subellipsoidea C-169]
Length = 95
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 66/82 (80%), Positives = 75/82 (91%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
NPS L+PSELID+CI SKIWVIMKGDKEL GTL+GFDV+VNMVLEDV EYE+TAEG R+T
Sbjct: 12 NPSHLMPSELIDKCINSKIWVIMKGDKELQGTLRGFDVFVNMVLEDVEEYEMTAEGLRVT 71
Query: 64 KLDQILLNGNNIAILVPGGSPD 85
+DQILLNGNNIA+LVPGG P+
Sbjct: 72 HMDQILLNGNNIAVLVPGGKPE 93
>gi|307104476|gb|EFN52729.1| hypothetical protein CHLNCDRAFT_138271 [Chlorella variabilis]
Length = 99
Score = 142 bits (359), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 66/89 (74%), Positives = 80/89 (89%), Gaps = 4/89 (4%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLK----GFDVYVNMVLEDVTEYEIT 56
+A NPSQ+LPSELIDRC+GSK+WV+M+GDKE+ GTL+ GFDV+VNMVLEDVTEYEIT
Sbjct: 9 LAGNPSQILPSELIDRCVGSKVWVVMRGDKEIEGTLRRVAAGFDVFVNMVLEDVTEYEIT 68
Query: 57 AEGRRITKLDQILLNGNNIAILVPGGSPD 85
EG+++T LDQILLNGNNIA+LVPGG P+
Sbjct: 69 PEGKKVTHLDQILLNGNNIAVLVPGGKPE 97
>gi|145348592|ref|XP_001418730.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144578960|gb|ABO97023.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 93
Score = 139 bits (349), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 64/83 (77%), Positives = 77/83 (92%), Gaps = 1/83 (1%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
NPS +LPSEL++RC+GS +WV+MK ++ELVGTL+GFDVYVNMVLEDVTEYE TAEGRR+T
Sbjct: 11 NPSLVLPSELVERCVGSPLWVLMKSERELVGTLRGFDVYVNMVLEDVTEYETTAEGRRVT 70
Query: 64 -KLDQILLNGNNIAILVPGGSPD 85
+LDQILLNGNNIA+LVPGG P+
Sbjct: 71 GRLDQILLNGNNIAMLVPGGGPE 93
>gi|154426284|ref|NP_001093908.1| U6 snRNA-associated Sm-like protein LSm5 [Danio rerio]
gi|152012711|gb|AAI50415.1| Zgc:171959 protein [Danio rerio]
Length = 91
Score = 134 bits (337), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 63/81 (77%), Positives = 73/81 (90%)
Query: 2 AHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRR 61
A NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRR
Sbjct: 6 ATNPSQLLPLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRR 65
Query: 62 ITKLDQILLNGNNIAILVPGG 82
ITKLDQILLNGNNI +L+PGG
Sbjct: 66 ITKLDQILLNGNNITMLIPGG 86
>gi|261245080|ref|NP_001140132.1| U6 snRNA-associated Sm-like protein LSm5 [Salmo salar]
gi|221220780|gb|ACM09051.1| U6 snRNA-associated Sm-like protein LSm5 [Salmo salar]
gi|221222120|gb|ACM09721.1| U6 snRNA-associated Sm-like protein LSm5 [Salmo salar]
gi|225715330|gb|ACO13511.1| U6 snRNA-associated Sm-like protein LSm5 [Esox lucius]
Length = 91
Score = 134 bits (336), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 63/81 (77%), Positives = 73/81 (90%)
Query: 2 AHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRR 61
A NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRR
Sbjct: 6 ATNPSQLLPLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRR 65
Query: 62 ITKLDQILLNGNNIAILVPGG 82
ITKLDQILLNGNNI +L+PGG
Sbjct: 66 ITKLDQILLNGNNITMLIPGG 86
>gi|308806167|ref|XP_003080395.1| Sm-like protein (ISS) [Ostreococcus tauri]
gi|116058855|emb|CAL54562.1| Sm-like protein (ISS) [Ostreococcus tauri]
Length = 95
Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 62/85 (72%), Positives = 75/85 (88%), Gaps = 1/85 (1%)
Query: 2 AHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRR 61
NPS LLPSEL++RC+GS +WV+MKG+KE+ GTL+GFDVYVNMVLEDVTEYE+TA GR
Sbjct: 9 TSNPSALLPSELVERCVGSPLWVLMKGEKEMTGTLRGFDVYVNMVLEDVTEYEMTANGRV 68
Query: 62 IT-KLDQILLNGNNIAILVPGGSPD 85
T ++DQILLNGNN+AILVPGG P+
Sbjct: 69 ETGRMDQILLNGNNVAILVPGGMPE 93
>gi|317420150|emb|CBN82186.1| U6 snRNA-associated Sm-like protein LSm5 [Dicentrarchus labrax]
Length = 91
Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 63/81 (77%), Positives = 73/81 (90%)
Query: 2 AHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRR 61
A NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRR
Sbjct: 6 ATNPSQLLPLELVDKCIGSRIHIVMKTDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRR 65
Query: 62 ITKLDQILLNGNNIAILVPGG 82
ITKLDQILLNGNNI +L+PGG
Sbjct: 66 ITKLDQILLNGNNITMLIPGG 86
>gi|198425042|ref|XP_002126895.1| PREDICTED: similar to U6 snRNA-associated Sm-like protein LSm5
[Ciona intestinalis]
Length = 89
Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 64/81 (79%), Positives = 73/81 (90%)
Query: 2 AHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRR 61
A NPSQLLP EL+D+CIGSKI +IMK +KE+VGTL GFD +VNMVLEDVTEYE T+EGRR
Sbjct: 4 AANPSQLLPLELVDKCIGSKIHIIMKSEKEIVGTLLGFDDFVNMVLEDVTEYESTSEGRR 63
Query: 62 ITKLDQILLNGNNIAILVPGG 82
I+KLDQILLNGNNI +LVPGG
Sbjct: 64 ISKLDQILLNGNNITMLVPGG 84
>gi|326922224|ref|XP_003207351.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like
[Meleagris gallopavo]
gi|363730150|ref|XP_418849.3| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Gallus
gallus]
Length = 91
Score = 134 bits (336), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 63/81 (77%), Positives = 73/81 (90%)
Query: 2 AHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRR 61
+ NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRR
Sbjct: 6 STNPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRR 65
Query: 62 ITKLDQILLNGNNIAILVPGG 82
ITKLDQILLNGNNI +LVPGG
Sbjct: 66 ITKLDQILLNGNNITMLVPGG 86
>gi|350539912|ref|NP_001232310.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia
guttata]
gi|197129593|gb|ACH46091.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia
guttata]
gi|197129594|gb|ACH46092.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia
guttata]
gi|197129595|gb|ACH46093.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia
guttata]
gi|197129831|gb|ACH46329.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia
guttata]
gi|197129908|gb|ACH46406.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia
guttata]
Length = 91
Score = 134 bits (336), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/79 (79%), Positives = 72/79 (91%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67
Query: 64 KLDQILLNGNNIAILVPGG 82
KLDQILLNGNNI +LVPGG
Sbjct: 68 KLDQILLNGNNITMLVPGG 86
>gi|348503608|ref|XP_003439356.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
1 [Oreochromis niloticus]
gi|348503610|ref|XP_003439357.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
2 [Oreochromis niloticus]
Length = 88
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/81 (77%), Positives = 73/81 (90%)
Query: 2 AHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRR 61
A NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRR
Sbjct: 3 ATNPSQLLPLELVDKCIGSRIHIVMKTDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRR 62
Query: 62 ITKLDQILLNGNNIAILVPGG 82
ITKLDQILLNGNNI +L+PGG
Sbjct: 63 ITKLDQILLNGNNITMLIPGG 83
>gi|6912488|ref|NP_036454.1| U6 snRNA-associated Sm-like protein LSm5 isoform a [Homo sapiens]
gi|13384942|ref|NP_079796.1| U6 snRNA-associated Sm-like protein LSm5 [Mus musculus]
gi|114053307|ref|NP_001040018.1| U6 snRNA-associated Sm-like protein LSm5 [Bos taurus]
gi|157822947|ref|NP_001100759.1| U6 snRNA-associated Sm-like protein LSm5 [Rattus norvegicus]
gi|197101673|ref|NP_001126628.1| U6 snRNA-associated Sm-like protein LSm5 [Pongo abelii]
gi|383873354|ref|NP_001244745.1| U6 snRNA-associated Sm-like protein LSm5 [Macaca mulatta]
gi|55628382|ref|XP_519030.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 3
[Pan troglodytes]
gi|73976577|ref|XP_854477.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Canis lupus
familiaris]
gi|149705702|ref|XP_001500867.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like [Equus
caballus]
gi|291394638|ref|XP_002713789.1| PREDICTED: LSM5 homolog, U6 small nuclear RNA associated
[Oryctolagus cuniculus]
gi|296209016|ref|XP_002751358.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Callithrix jacchus]
gi|301772952|ref|XP_002921890.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like
[Ailuropoda melanoleuca]
gi|332242762|ref|XP_003270553.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 1
[Nomascus leucogenys]
gi|335305486|ref|XP_003360223.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Sus
scrofa]
gi|344270397|ref|XP_003407031.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Loxodonta africana]
gi|348568734|ref|XP_003470153.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Cavia
porcellus]
gi|395831025|ref|XP_003788612.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Otolemur garnettii]
gi|397527112|ref|XP_003833447.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Pan
paniscus]
gi|402863784|ref|XP_003896179.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
1 [Papio anubis]
gi|403278350|ref|XP_003930776.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Saimiri
boliviensis boliviensis]
gi|407262510|ref|XP_003946397.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Mus
musculus]
gi|410952602|ref|XP_003982968.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Felis catus]
gi|426227726|ref|XP_004007967.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Ovis aries]
gi|426355879|ref|XP_004045331.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
1 [Gorilla gorilla gorilla]
gi|426355881|ref|XP_004045332.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
2 [Gorilla gorilla gorilla]
gi|10720081|sp|Q9Y4Y9.3|LSM5_HUMAN RecName: Full=U6 snRNA-associated Sm-like protein LSm5
gi|52783752|sp|P62322.2|LSM5_MOUSE RecName: Full=U6 snRNA-associated Sm-like protein LSm5
gi|75054789|sp|Q5R628.3|LSM5_PONAB RecName: Full=U6 snRNA-associated Sm-like protein LSm5
gi|116256439|sp|Q2HJH0.3|LSM5_BOVIN RecName: Full=U6 snRNA-associated Sm-like protein LSm5
gi|5919151|gb|AAD56229.1|AF182291_1 U6 snRNA-associated Sm-like protein LSm5 [Homo sapiens]
gi|5262860|emb|CAB45868.1| Lsm5 protein [Homo sapiens]
gi|12844520|dbj|BAB26394.1| unnamed protein product [Mus musculus]
gi|12847199|dbj|BAB27475.1| unnamed protein product [Mus musculus]
gi|13543565|gb|AAH05938.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|38512042|gb|AAH61085.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|51105856|gb|EAL24440.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|55732167|emb|CAH92788.1| hypothetical protein [Pongo abelii]
gi|55930921|gb|AAH48459.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|88682880|gb|AAI05405.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Bos taurus]
gi|119614397|gb|EAW93991.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_b [Homo sapiens]
gi|124376122|gb|AAI32627.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|124376508|gb|AAI32629.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|148672763|gb|EDL04710.1| mCG13108, isoform CRA_a [Mus musculus]
gi|149033255|gb|EDL88056.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
(predicted), isoform CRA_c [Rattus norvegicus]
gi|208966684|dbj|BAG73356.1| LSM5 homolog, U6 small nuclear RNA associated [synthetic
construct]
gi|296488471|tpg|DAA30584.1| TPA: U6 snRNA-associated Sm-like protein LSm5 [Bos taurus]
gi|312153290|gb|ADQ33157.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[synthetic construct]
gi|355560708|gb|EHH17394.1| U6 snRNA-associated Sm-like protein LSm5 [Macaca mulatta]
gi|380811262|gb|AFE77506.1| U6 snRNA-associated Sm-like protein LSm5 isoform a [Macaca
mulatta]
gi|383417167|gb|AFH31797.1| U6 snRNA-associated Sm-like protein LSm5 isoform a [Macaca
mulatta]
gi|384941550|gb|AFI34380.1| U6 snRNA-associated Sm-like protein LSm5 isoform a [Macaca
mulatta]
gi|410223678|gb|JAA09058.1| LSM5 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410255044|gb|JAA15489.1| LSM5 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410354065|gb|JAA43636.1| LSM5 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|417395572|gb|JAA44840.1| Putative u6 snrna-associated sm-like protein [Desmodus rotundus]
gi|440911522|gb|ELR61182.1| U6 snRNA-associated Sm-like protein LSm5 [Bos grunniens mutus]
Length = 91
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/79 (79%), Positives = 72/79 (91%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67
Query: 64 KLDQILLNGNNIAILVPGG 82
KLDQILLNGNNI +LVPGG
Sbjct: 68 KLDQILLNGNNITMLVPGG 86
>gi|213982795|ref|NP_001135569.1| U6 snRNA-associated Sm-like protein LSm5 [Xenopus (Silurana)
tropicalis]
gi|195539827|gb|AAI68072.1| Unknown (protein for MGC:185877) [Xenopus (Silurana) tropicalis]
Length = 91
Score = 133 bits (335), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/79 (79%), Positives = 72/79 (91%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67
Query: 64 KLDQILLNGNNIAILVPGG 82
KLDQILLNGNNI +LVPGG
Sbjct: 68 KLDQILLNGNNITMLVPGG 86
>gi|260807635|ref|XP_002598614.1| hypothetical protein BRAFLDRAFT_118348 [Branchiostoma floridae]
gi|229283887|gb|EEN54626.1| hypothetical protein BRAFLDRAFT_118348 [Branchiostoma floridae]
Length = 87
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/82 (75%), Positives = 73/82 (89%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
MA NPS LLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+E T+EGR
Sbjct: 1 MASNPSHLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFENTSEGR 60
Query: 61 RITKLDQILLNGNNIAILVPGG 82
RITKLDQILLNGNNI +L+PGG
Sbjct: 61 RITKLDQILLNGNNITMLIPGG 82
>gi|410909464|ref|XP_003968210.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Takifugu rubripes]
gi|47225103|emb|CAF98730.1| unnamed protein product [Tetraodon nigroviridis]
Length = 88
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/81 (76%), Positives = 73/81 (90%)
Query: 2 AHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRR 61
A NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+E+T EGRR
Sbjct: 3 ATNPSQLLPLELVDKCIGSRIHIVMKTDKEIVGTLLGFDDFVNMVLEDVTEFEVTPEGRR 62
Query: 62 ITKLDQILLNGNNIAILVPGG 82
ITKLDQILLNGNNI +L+PGG
Sbjct: 63 ITKLDQILLNGNNITMLIPGG 83
>gi|346470761|gb|AEO35225.1| hypothetical protein [Amblyomma maculatum]
Length = 90
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/85 (78%), Positives = 73/85 (85%), Gaps = 1/85 (1%)
Query: 2 AHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRR 61
A NPS LLP ELID+CIGSKI +IMK DKE+VGTL GFD +VNMVLEDVTEYE T EGRR
Sbjct: 5 AVNPSSLLPLELIDKCIGSKIHIIMKSDKEIVGTLLGFDDFVNMVLEDVTEYESTPEGRR 64
Query: 62 ITKLDQILLNGNNIAILVPGGS-PD 85
ITKLDQILLNGNNI ++VPGG PD
Sbjct: 65 ITKLDQILLNGNNITMMVPGGDMPD 89
>gi|427785997|gb|JAA58450.1| Putative u6 snrna-associated sm-like protein [Rhipicephalus
pulchellus]
Length = 90
Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/85 (78%), Positives = 73/85 (85%), Gaps = 1/85 (1%)
Query: 2 AHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRR 61
A NPS LLP ELID+CIGSKI +IMK DKE+VGTL GFD +VNMVLEDVTEYE T EGRR
Sbjct: 5 AVNPSSLLPLELIDKCIGSKIHIIMKSDKEIVGTLLGFDDFVNMVLEDVTEYESTPEGRR 64
Query: 62 ITKLDQILLNGNNIAILVPGGS-PD 85
ITKLDQILLNGNNI ++VPGG PD
Sbjct: 65 ITKLDQILLNGNNITMMVPGGDMPD 89
>gi|229366148|gb|ACQ58054.1| U6 snRNA-associated Sm-like protein LSm5 [Anoplopoma fimbria]
Length = 91
Score = 132 bits (332), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/79 (78%), Positives = 72/79 (91%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8 NPSQLLPLELVDKCIGSRIHIVMKTDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67
Query: 64 KLDQILLNGNNIAILVPGG 82
KLDQILLNGNNI +L+PGG
Sbjct: 68 KLDQILLNGNNITMLIPGG 86
>gi|432929710|ref|XP_004081239.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Oryzias
latipes]
Length = 91
Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/83 (77%), Positives = 74/83 (89%), Gaps = 1/83 (1%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8 NPSQLLPLELVDKCIGSRIHIVMKTDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67
Query: 64 KLDQILLNGNNIAILVPGGS-PD 85
KLDQILLNGNNI +L+PGG PD
Sbjct: 68 KLDQILLNGNNITMLIPGGEGPD 90
>gi|387915912|gb|AFK11565.1| U6 snRNA-associated Sm-like protein LSm5 [Callorhinchus milii]
Length = 90
Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/79 (78%), Positives = 72/79 (91%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 7 NPSQLLPLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 66
Query: 64 KLDQILLNGNNIAILVPGG 82
KLDQILLNGNNI +L+PGG
Sbjct: 67 KLDQILLNGNNITMLIPGG 85
>gi|197129592|gb|ACH46090.1| putative u6 snRNA-associated Sm-like protein [Taeniopygia
guttata]
Length = 91
Score = 132 bits (332), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 62/79 (78%), Positives = 72/79 (91%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
NPSQLLP EL+D+CIGS+I ++MK DK++VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8 NPSQLLPLELVDKCIGSRIHIVMKSDKQIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67
Query: 64 KLDQILLNGNNIAILVPGG 82
KLDQILLNGNNI +LVPGG
Sbjct: 68 KLDQILLNGNNITMLVPGG 86
>gi|355691296|gb|EHH26481.1| hypothetical protein EGK_16467 [Macaca mulatta]
Length = 91
Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 61/79 (77%), Positives = 71/79 (89%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
NPSQLLP E +D+CIGS+I ++MK DKE+VGTL GFD +VNMVL+DVTE+EIT EGRRIT
Sbjct: 8 NPSQLLPLEFVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLQDVTEFEITPEGRRIT 67
Query: 64 KLDQILLNGNNIAILVPGG 82
KLDQILLNGNNI +LVPGG
Sbjct: 68 KLDQILLNGNNITMLVPGG 86
>gi|442748493|gb|JAA66406.1| Putative u6 snrna-associated sm-like protein [Ixodes ricinus]
Length = 90
Score = 131 bits (330), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 66/83 (79%), Positives = 72/83 (86%), Gaps = 1/83 (1%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
NPS LLP ELID+CIGSKI +IMK DKE+VGTL GFD +VNMVLEDVTEYE T EGRRIT
Sbjct: 7 NPSSLLPLELIDKCIGSKIHIIMKSDKEIVGTLLGFDDFVNMVLEDVTEYESTPEGRRIT 66
Query: 64 KLDQILLNGNNIAILVPGGS-PD 85
KLDQILLNGNNI ++VPGG PD
Sbjct: 67 KLDQILLNGNNITMMVPGGDMPD 89
>gi|242023983|ref|XP_002432410.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212517833|gb|EEB19672.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 91
Score = 131 bits (329), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 65/86 (75%), Positives = 74/86 (86%), Gaps = 1/86 (1%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
+A NPS LLP EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+LEDVTEYE T EGR
Sbjct: 5 VATNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMLLEDVTEYESTPEGR 64
Query: 61 RITKLDQILLNGNNIAILVPGGS-PD 85
RITKLDQILLNGNNI +LVPGG PD
Sbjct: 65 RITKLDQILLNGNNITMLVPGGEMPD 90
>gi|309241419|ref|XP_003115877.1| CRE-LSM-5 protein [Caenorhabditis remanei]
gi|308256412|gb|EFP00365.1| CRE-LSM-5 protein [Caenorhabditis remanei]
Length = 91
Score = 130 bits (328), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 63/81 (77%), Positives = 71/81 (87%)
Query: 2 AHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRR 61
+ NP+ LLP ELID+CIGSKIWVIMK DKE+VGTL GFD YVNMVLEDV EYE TAEG+R
Sbjct: 6 STNPNTLLPLELIDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTAEGKR 65
Query: 62 ITKLDQILLNGNNIAILVPGG 82
+TKLD ILLNGN+I +LVPGG
Sbjct: 66 MTKLDTILLNGNHITMLVPGG 86
>gi|268561698|ref|XP_002638393.1| C. briggsae CBR-LSM-5 protein [Caenorhabditis briggsae]
gi|341889312|gb|EGT45247.1| hypothetical protein CAEBREN_08263 [Caenorhabditis brenneri]
gi|341889389|gb|EGT45324.1| hypothetical protein CAEBREN_18101 [Caenorhabditis brenneri]
Length = 91
Score = 130 bits (328), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 63/81 (77%), Positives = 71/81 (87%)
Query: 2 AHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRR 61
+ NP+ LLP ELID+CIGSKIWVIMK DKE+VGTL GFD YVNMVLEDV EYE TAEG+R
Sbjct: 6 STNPNTLLPLELIDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTAEGKR 65
Query: 62 ITKLDQILLNGNNIAILVPGG 82
+TKLD ILLNGN+I +LVPGG
Sbjct: 66 MTKLDTILLNGNHITMLVPGG 86
>gi|147901169|ref|NP_001087187.1| U6 snRNA-associated Sm-like protein LSm5 [Xenopus laevis]
gi|51873770|gb|AAH78466.1| MGC85219 protein [Xenopus laevis]
Length = 91
Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 62/79 (78%), Positives = 71/79 (89%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
N SQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8 NSSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67
Query: 64 KLDQILLNGNNIAILVPGG 82
KLDQILLNGNNI +LVPGG
Sbjct: 68 KLDQILLNGNNITMLVPGG 86
>gi|324529784|gb|ADY49042.1| U6 snRNA-associated Sm-like protein LSm5 [Ascaris suum]
Length = 94
Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 63/85 (74%), Positives = 73/85 (85%), Gaps = 1/85 (1%)
Query: 2 AHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRR 61
A NPS LLP EL+D+CIGS+IWVIMKG+KE+VGTL GFD YVNMVLEDV EYE T +G+R
Sbjct: 9 ATNPSTLLPLELVDKCIGSRIWVIMKGEKEIVGTLTGFDDYVNMVLEDVVEYENTVDGKR 68
Query: 62 ITKLDQILLNGNNIAILVPGG-SPD 85
+TKLD ILLNGN+I +LVPGG PD
Sbjct: 69 VTKLDTILLNGNHITMLVPGGEGPD 93
>gi|339233484|ref|XP_003381859.1| putative LSM domain protein [Trichinella spiralis]
gi|339261308|ref|XP_003367972.1| putative LSM domain protein [Trichinella spiralis]
gi|316964809|gb|EFV49750.1| putative LSM domain protein [Trichinella spiralis]
gi|316979279|gb|EFV62087.1| putative LSM domain protein [Trichinella spiralis]
Length = 92
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/81 (75%), Positives = 72/81 (88%)
Query: 2 AHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRR 61
A NPS LLP ELID+CIGSK+W++MKG+KELVGTL GFD YVN+VLEDV EYE T EG+R
Sbjct: 7 AVNPSTLLPLELIDKCIGSKLWIVMKGNKELVGTLLGFDDYVNIVLEDVIEYETTTEGKR 66
Query: 62 ITKLDQILLNGNNIAILVPGG 82
IT+LDQILLNG +IA+L+PGG
Sbjct: 67 ITRLDQILLNGTHIAMLIPGG 87
>gi|109077185|ref|XP_001093268.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5 [Macaca
mulatta]
gi|355747728|gb|EHH52225.1| U6 snRNA-associated Sm-like protein LSm5 [Macaca fascicularis]
gi|355749905|gb|EHH54243.1| hypothetical protein EGM_15034 [Macaca fascicularis]
Length = 91
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 60/79 (75%), Positives = 70/79 (88%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
NPSQLLP E +D+CIGS+I ++MK DKE+VGTL GFD +VNMVL+DVTE+EIT EGRRIT
Sbjct: 8 NPSQLLPLEFVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLQDVTEFEITPEGRRIT 67
Query: 64 KLDQILLNGNNIAILVPGG 82
KLDQILLNGNN +LVPGG
Sbjct: 68 KLDQILLNGNNTTMLVPGG 86
>gi|193582383|ref|XP_001951255.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like
[Acyrthosiphon pisum]
Length = 91
Score = 129 bits (325), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 61/82 (74%), Positives = 72/82 (87%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
+A NPS LLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNM+LEDVTEYE T EGR
Sbjct: 5 VATNPSTLLPLELVDKCIGSRIHIVMKNDKEIVGTLLGFDDFVNMLLEDVTEYESTPEGR 64
Query: 61 RITKLDQILLNGNNIAILVPGG 82
R+TKLDQILLNGNNI +LVPGG
Sbjct: 65 RVTKLDQILLNGNNITMLVPGG 86
>gi|17560310|ref|NP_506870.1| Protein LSM-5 [Caenorhabditis elegans]
gi|3876465|emb|CAB03013.1| Protein LSM-5 [Caenorhabditis elegans]
Length = 91
Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 62/81 (76%), Positives = 71/81 (87%)
Query: 2 AHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRR 61
+ NP+ LLP ELID+CIGSKIWVIMK DKE+VGTL GFD YVNMVLEDV EYE TA+G+R
Sbjct: 6 STNPNTLLPLELIDKCIGSKIWVIMKNDKEIVGTLTGFDDYVNMVLEDVVEYENTADGKR 65
Query: 62 ITKLDQILLNGNNIAILVPGG 82
+TKLD ILLNGN+I +LVPGG
Sbjct: 66 MTKLDTILLNGNHITMLVPGG 86
>gi|156555736|ref|XP_001602011.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Nasonia
vitripennis]
Length = 93
Score = 129 bits (323), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/83 (74%), Positives = 72/83 (86%), Gaps = 1/83 (1%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
NPS LLP EL+D+CIGS+I +IMK DKE+VGTLKGFD +VNM+L+DVTE E T EGRR+T
Sbjct: 10 NPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLKGFDDFVNMLLDDVTESEATPEGRRVT 69
Query: 64 KLDQILLNGNNIAILVPGGS-PD 85
KLDQILLNGNNI +LVPGG PD
Sbjct: 70 KLDQILLNGNNITMLVPGGDMPD 92
>gi|402871503|ref|XP_003899701.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Papio
anubis]
Length = 91
Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 60/79 (75%), Positives = 70/79 (88%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
NPSQLL E +D+CIGS+I ++MK DKE+VGTL GFD +VNMVL+DVTE+EIT EGRRIT
Sbjct: 8 NPSQLLSLEFVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLQDVTEFEITPEGRRIT 67
Query: 64 KLDQILLNGNNIAILVPGG 82
KLDQILLNGNNI +LVPGG
Sbjct: 68 KLDQILLNGNNITMLVPGG 86
>gi|389610013|dbj|BAM18618.1| small nuclear ribonucleoprotein, core [Papilio xuthus]
Length = 95
Score = 128 bits (321), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/79 (75%), Positives = 72/79 (91%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
NP+ LLP EL+D+CIGS+I +IMK DKE+VGTL+GFD +VNM+L+DVTEYE T EGR+IT
Sbjct: 7 NPNTLLPLELVDKCIGSRIHIIMKNDKEMVGTLQGFDDFVNMLLDDVTEYESTPEGRKIT 66
Query: 64 KLDQILLNGNNIAILVPGG 82
KLDQILLNGNNIA+LVPGG
Sbjct: 67 KLDQILLNGNNIAMLVPGG 85
>gi|196001101|ref|XP_002110418.1| conserved hypothetical protein [Trichoplax adhaerens]
gi|190586369|gb|EDV26422.1| conserved hypothetical protein [Trichoplax adhaerens]
Length = 84
Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 61/77 (79%), Positives = 70/77 (90%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELID+CIGS+I +IMK DKE+VGTL GFD +VNMVLEDVTEYE TA+GRR+TKL
Sbjct: 4 SQLLPLELIDKCIGSRIHIIMKSDKEVVGTLLGFDDFVNMVLEDVTEYETTADGRRVTKL 63
Query: 66 DQILLNGNNIAILVPGG 82
DQILLNGNNI ++VPGG
Sbjct: 64 DQILLNGNNITMMVPGG 80
>gi|299471840|emb|CBN77010.1| Sm-like protein LSm5 [Ectocarpus siliculosus]
Length = 85
Score = 128 bits (321), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 60/81 (74%), Positives = 75/81 (92%), Gaps = 1/81 (1%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEG-RRITK 64
++LLP ELID+CIGS++W+IMKGDKELVGTL+GFD YVNMVL+DVTEYE+ A+G +R +
Sbjct: 3 ARLLPLELIDKCIGSRLWIIMKGDKELVGTLRGFDDYVNMVLDDVTEYEVDADGTKRRIQ 62
Query: 65 LDQILLNGNNIAILVPGGSPD 85
LDQILLNGNN+A+LVPGGSP+
Sbjct: 63 LDQILLNGNNVAMLVPGGSPE 83
>gi|225710006|gb|ACO10849.1| U6 snRNA-associated Sm-like protein LSm5 [Caligus rogercresseyi]
Length = 93
Score = 127 bits (319), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 60/81 (74%), Positives = 72/81 (88%)
Query: 2 AHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRR 61
A NPS +LP EL+DR IGS+I +IMKGDKE+VGTL GFD +VNMVLEDVTE+E T+EG+R
Sbjct: 7 APNPSTILPLELVDRAIGSRIHIIMKGDKEIVGTLLGFDDFVNMVLEDVTEFESTSEGQR 66
Query: 62 ITKLDQILLNGNNIAILVPGG 82
++KLDQILLNGNNI +LVPGG
Sbjct: 67 VSKLDQILLNGNNITMLVPGG 87
>gi|157107685|ref|XP_001649890.1| small nuclear ribonucleoprotein, core, putative [Aedes aegypti]
gi|108879502|gb|EAT43727.1| AAEL004848-PA [Aedes aegypti]
Length = 92
Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 61/79 (77%), Positives = 70/79 (88%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
N S LLP EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+LEDVTEYE T+EGRRIT
Sbjct: 8 NQSALLPLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMLLEDVTEYENTSEGRRIT 67
Query: 64 KLDQILLNGNNIAILVPGG 82
KLDQILLNGNNI +LVPGG
Sbjct: 68 KLDQILLNGNNITMLVPGG 86
>gi|157103848|ref|XP_001648155.1| small nuclear ribonucleoprotein, core, putative [Aedes aegypti]
gi|108869330|gb|EAT33555.1| AAEL014169-PA [Aedes aegypti]
Length = 92
Score = 127 bits (319), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 61/79 (77%), Positives = 70/79 (88%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
N S LLP EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+LEDVTEYE T+EGRRIT
Sbjct: 8 NQSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMLLEDVTEYENTSEGRRIT 67
Query: 64 KLDQILLNGNNIAILVPGG 82
KLDQILLNGNNI +LVPGG
Sbjct: 68 KLDQILLNGNNITMLVPGG 86
>gi|332026604|gb|EGI66713.1| U6 snRNA-associated Sm-like protein LSm5 [Acromyrmex echinatior]
Length = 91
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 74/86 (86%), Gaps = 1/86 (1%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
++ NPS LLP EL+D+CIGS+I +IMK DKE+VGTL+GFD +VNM+LEDVTE E T EGR
Sbjct: 5 VSTNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLQGFDDFVNMLLEDVTESEATPEGR 64
Query: 61 RITKLDQILLNGNNIAILVPGGS-PD 85
R+TKLDQILLNG+NI +LVPGG PD
Sbjct: 65 RVTKLDQILLNGSNITMLVPGGEMPD 90
>gi|307178103|gb|EFN66930.1| U6 snRNA-associated Sm-like protein LSm5 [Camponotus floridanus]
Length = 91
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 74/86 (86%), Gaps = 1/86 (1%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
++ NPS LLP EL+D+CIGS+I +IMK DKE+VGTL+GFD +VNM+LEDVTE E T EGR
Sbjct: 5 VSTNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLQGFDDFVNMLLEDVTESEATPEGR 64
Query: 61 RITKLDQILLNGNNIAILVPGGS-PD 85
R+TKLDQILLNG+NI +LVPGG PD
Sbjct: 65 RVTKLDQILLNGSNITMLVPGGEMPD 90
>gi|158296145|ref|XP_316632.4| AGAP006604-PA [Anopheles gambiae str. PEST]
gi|157016373|gb|EAA10979.4| AGAP006604-PA [Anopheles gambiae str. PEST]
Length = 94
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 64/85 (75%), Positives = 72/85 (84%), Gaps = 1/85 (1%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
N S LLP EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+LEDVTEYE T EGRRIT
Sbjct: 8 NQSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMLLEDVTEYENTPEGRRIT 67
Query: 64 KLDQILLNGNNIAILVPGGSPD-PE 87
KLDQILLNGNNI +LVPG S D PE
Sbjct: 68 KLDQILLNGNNITMLVPGSSGDLPE 92
>gi|307197393|gb|EFN78665.1| U6 snRNA-associated Sm-like protein LSm5 [Harpegnathos saltator]
Length = 91
Score = 127 bits (318), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 74/86 (86%), Gaps = 1/86 (1%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
++ NPS LLP EL+D+CIGS+I +IMK DKE+VGTL+GFD +VNM+LEDVTE E T EGR
Sbjct: 5 VSTNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLQGFDDFVNMLLEDVTESEATPEGR 64
Query: 61 RITKLDQILLNGNNIAILVPGGS-PD 85
R+TKLDQILLNG+NI +LVPGG PD
Sbjct: 65 RVTKLDQILLNGSNITMLVPGGEMPD 90
>gi|225711126|gb|ACO11409.1| U6 snRNA-associated Sm-like protein LSm5 [Caligus rogercresseyi]
Length = 93
Score = 126 bits (316), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/81 (72%), Positives = 72/81 (88%)
Query: 2 AHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRR 61
A NPS +LP EL+D+ IGS+I +IMKGDKE+VGTL GFD +VNMVLEDVTE+E T+EG+R
Sbjct: 7 APNPSTILPLELVDKAIGSRIHIIMKGDKEIVGTLLGFDDFVNMVLEDVTEFESTSEGQR 66
Query: 62 ITKLDQILLNGNNIAILVPGG 82
++KLDQILLNGNNI +LVPGG
Sbjct: 67 VSKLDQILLNGNNITMLVPGG 87
>gi|170055785|ref|XP_001863736.1| Lsm5 protein [Culex quinquefasciatus]
gi|167875611|gb|EDS38994.1| Lsm5 protein [Culex quinquefasciatus]
Length = 92
Score = 125 bits (315), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 61/79 (77%), Positives = 69/79 (87%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
N S LLP EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+LEDVTEYE T EGRRIT
Sbjct: 8 NQSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMLLEDVTEYENTPEGRRIT 67
Query: 64 KLDQILLNGNNIAILVPGG 82
KLDQILLNGNNI +LVPGG
Sbjct: 68 KLDQILLNGNNITMLVPGG 86
>gi|221118892|ref|XP_002154101.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Hydra
magnipapillata]
Length = 93
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/82 (74%), Positives = 69/82 (84%)
Query: 2 AHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRR 61
NPS LLP ELID+CIGSKI +IMK D+E+VGT GFD +VN+VLEDVTE+E T EGRR
Sbjct: 8 TSNPSLLLPFELIDKCIGSKIHIIMKTDREIVGTFLGFDDFVNVVLEDVTEFENTPEGRR 67
Query: 62 ITKLDQILLNGNNIAILVPGGS 83
ITKLDQILLNGNNI +LVPGG
Sbjct: 68 ITKLDQILLNGNNITMLVPGGQ 89
>gi|91078636|ref|XP_968589.1| PREDICTED: similar to Lsm5 protein [Tribolium castaneum]
gi|270004060|gb|EFA00508.1| hypothetical protein TcasGA2_TC003372 [Tribolium castaneum]
Length = 89
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/82 (74%), Positives = 70/82 (85%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
M + S LLP EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+LEDVTEYE T EGR
Sbjct: 4 MPVSSSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMLLEDVTEYETTPEGR 63
Query: 61 RITKLDQILLNGNNIAILVPGG 82
RITKLDQILLNGNNI +LVPGG
Sbjct: 64 RITKLDQILLNGNNITMLVPGG 85
>gi|392341168|ref|XP_003754272.1| PREDICTED: hypothetical protein LOC685221 [Rattus norvegicus]
gi|392348953|ref|XP_002729703.2| PREDICTED: hypothetical protein LOC685221 [Rattus norvegicus]
Length = 94
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/85 (74%), Positives = 72/85 (84%), Gaps = 3/85 (3%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKEL---VGTLKGFDVYVNMVLEDVTEYEITA 57
M N SQLLP EL+D+CIGS+I ++MK DKE+ VGTL GFD +VNMVLEDVTE+EIT
Sbjct: 5 MTTNLSQLLPLELVDKCIGSRIPIVMKSDKEIKEIVGTLLGFDDFVNMVLEDVTEFEITP 64
Query: 58 EGRRITKLDQILLNGNNIAILVPGG 82
EGRRITKLDQILLNGNNI +LVPGG
Sbjct: 65 EGRRITKLDQILLNGNNITMLVPGG 89
>gi|149025174|gb|EDL81541.1| rCG64141 [Rattus norvegicus]
Length = 94
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/85 (74%), Positives = 72/85 (84%), Gaps = 3/85 (3%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELV---GTLKGFDVYVNMVLEDVTEYEITA 57
M N SQLLP EL+D+CIGS+I ++MK DKE+V GTL GFD +VNMVLEDVTE+EIT
Sbjct: 5 MTTNLSQLLPLELVDKCIGSRIPIVMKSDKEIVEIVGTLLGFDDFVNMVLEDVTEFEITP 64
Query: 58 EGRRITKLDQILLNGNNIAILVPGG 82
EGRRITKLDQILLNGNNI +LVPGG
Sbjct: 65 EGRRITKLDQILLNGNNITMLVPGG 89
>gi|110760718|ref|XP_001120607.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like [Apis
mellifera]
gi|340715932|ref|XP_003396461.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like [Bombus
terrestris]
gi|350396810|ref|XP_003484674.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Bombus
impatiens]
gi|380019757|ref|XP_003693769.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Apis
florea]
gi|383866113|ref|XP_003708516.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Megachile rotundata]
Length = 91
Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/86 (70%), Positives = 73/86 (84%), Gaps = 1/86 (1%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
++ NPS LLP EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+LEDVTE E T EGR
Sbjct: 5 VSTNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMLLEDVTESEATPEGR 64
Query: 61 RITKLDQILLNGNNIAILVPGGS-PD 85
R+TKLDQILLNG+NI +LVPGG PD
Sbjct: 65 RVTKLDQILLNGSNITMLVPGGEMPD 90
>gi|119614396|gb|EAW93990.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae),
isoform CRA_a [Homo sapiens]
Length = 85
Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 58/74 (78%), Positives = 67/74 (90%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67
Query: 64 KLDQILLNGNNIAI 77
KLDQILLNGNNI +
Sbjct: 68 KLDQILLNGNNITM 81
>gi|332374080|gb|AEE62181.1| unknown [Dendroctonus ponderosae]
Length = 89
Score = 124 bits (312), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 60/82 (73%), Positives = 70/82 (85%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
M + S LLP EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+LEDVTEYE T EGR
Sbjct: 4 MPVSSSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMLLEDVTEYETTPEGR 63
Query: 61 RITKLDQILLNGNNIAILVPGG 82
RIT+LDQILLNGNNI +LVPGG
Sbjct: 64 RITRLDQILLNGNNITMLVPGG 85
>gi|290561451|gb|ADD38126.1| U6 snRNA-associated Sm-like protein LSm5 [Lepeophtheirus
salmonis]
Length = 95
Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 59/82 (71%), Positives = 71/82 (86%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
+A NPS +LP EL+D+ IGS+I +IMK DKE+VGTL GFD +VNMVLEDVTEYE T EGR
Sbjct: 6 VAPNPSTILPLELVDKAIGSRIHIIMKNDKEIVGTLLGFDDFVNMVLEDVTEYESTPEGR 65
Query: 61 RITKLDQILLNGNNIAILVPGG 82
R++KLDQILLNGN+I +LVPGG
Sbjct: 66 RVSKLDQILLNGNHITMLVPGG 87
>gi|290561032|gb|ADD37918.1| U6 snRNA-associated Sm-like protein LSm5 [Lepeophtheirus
salmonis]
Length = 95
Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 59/82 (71%), Positives = 71/82 (86%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
+A NPS +LP EL+D+ IGS+I +IMK DKE+VGTL GFD +VNMVLEDVTEYE T EGR
Sbjct: 6 VAPNPSTILPLELVDKAIGSRIHIIMKNDKEIVGTLLGFDDFVNMVLEDVTEYESTPEGR 65
Query: 61 RITKLDQILLNGNNIAILVPGG 82
R++KLDQILLNGN+I +LVPGG
Sbjct: 66 RVSKLDQILLNGNHITMLVPGG 87
>gi|392597490|gb|EIW86812.1| like-Sm ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 84
Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 61/81 (75%), Positives = 69/81 (85%), Gaps = 1/81 (1%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQ+LP ELIDRCIGSKIWV+MKGD+E GTL GFD +VNMVLEDVTE+EITAEG + TKL
Sbjct: 3 SQILPLELIDRCIGSKIWVVMKGDREFSGTLLGFDDFVNMVLEDVTEFEITAEGIKQTKL 62
Query: 66 DQILLNGNNIAILVPGGS-PD 85
Q LLNGNNI +L+PG S PD
Sbjct: 63 SQTLLNGNNICMLIPGSSGPD 83
>gi|291226439|ref|XP_002733197.1| PREDICTED: LSM5 homolog, U6 small nuclear RNA associated-like
[Saccoglossus kowalevskii]
Length = 91
Score = 124 bits (311), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 60/84 (71%), Positives = 72/84 (85%), Gaps = 1/84 (1%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDV E+E T EGRR+T
Sbjct: 8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVVEFENTPEGRRVT 67
Query: 64 KLDQILLNGNNIAILVPGGSPDPE 87
KL+QILLNGNNI +L+P GS PE
Sbjct: 68 KLEQILLNGNNITMLIP-GSEGPE 90
>gi|301630685|ref|XP_002944447.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like, partial
[Xenopus (Silurana) tropicalis]
Length = 81
Score = 124 bits (310), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 58/74 (78%), Positives = 67/74 (90%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67
Query: 64 KLDQILLNGNNIAI 77
KLDQILLNGNNI +
Sbjct: 68 KLDQILLNGNNITM 81
>gi|126336758|ref|XP_001371876.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like
[Monodelphis domestica]
Length = 166
Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 58/76 (76%), Positives = 68/76 (89%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67
Query: 64 KLDQILLNGNNIAILV 79
KLDQILLNGNNI ++
Sbjct: 68 KLDQILLNGNNITMMA 83
>gi|109502984|ref|XP_001054331.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Rattus
norvegicus]
gi|392333476|ref|XP_003752904.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like [Rattus
norvegicus]
Length = 90
Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 59/82 (71%), Positives = 70/82 (85%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
N SQLLP EL+ +CIGS+I ++MK DK++VGT GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8 NRSQLLPLELVAKCIGSRIHIVMKSDKDIVGTPLGFDDFVNMVLEDVTEFEITPEGRRIT 67
Query: 64 KLDQILLNGNNIAILVPGGSPD 85
KLDQILLNGNNI +LVPG P+
Sbjct: 68 KLDQILLNGNNITMLVPGEGPE 89
>gi|395517528|ref|XP_003762928.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Sarcophilus harrisii]
Length = 140
Score = 123 bits (308), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 57/73 (78%), Positives = 66/73 (90%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQIL
Sbjct: 63 PPELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQIL 122
Query: 70 LNGNNIAILVPGG 82
LNGNNI +LVPGG
Sbjct: 123 LNGNNITMLVPGG 135
>gi|351699507|gb|EHB02426.1| U6 snRNA-associated Sm-like protein LSm5, partial [Heterocephalus
glaber]
Length = 82
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 57/77 (74%), Positives = 68/77 (88%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
+ L +EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKL
Sbjct: 1 NHFLSTELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKL 60
Query: 66 DQILLNGNNIAILVPGG 82
DQILLNGNNI +LVPGG
Sbjct: 61 DQILLNGNNITMLVPGG 77
>gi|313213177|emb|CBY37031.1| unnamed protein product [Oikopleura dioica]
gi|313226437|emb|CBY21582.1| unnamed protein product [Oikopleura dioica]
Length = 86
Score = 122 bits (306), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/77 (72%), Positives = 70/77 (90%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQL+P EL+D+CIGS+I +IM+ DKE+VGTL GFD +VNMVLEDVTEYE T++G++ITKL
Sbjct: 3 SQLMPLELVDKCIGSRIHIIMRNDKEIVGTLLGFDEFVNMVLEDVTEYEATSDGKKITKL 62
Query: 66 DQILLNGNNIAILVPGG 82
+QILLNGNNI +LVPGG
Sbjct: 63 EQILLNGNNITMLVPGG 79
>gi|313240518|emb|CBY32850.1| unnamed protein product [Oikopleura dioica]
Length = 86
Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/77 (72%), Positives = 70/77 (90%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQL+P EL+D+CIGS+I +IM+ DKE+VGTL GFD +VNMVLEDVTEYE T++G++ITKL
Sbjct: 3 SQLMPLELVDKCIGSRIHIIMRNDKEIVGTLLGFDEFVNMVLEDVTEYEATSDGKKITKL 62
Query: 66 DQILLNGNNIAILVPGG 82
+QILLNGNNI +LVPGG
Sbjct: 63 EQILLNGNNITMLVPGG 79
>gi|391338472|ref|XP_003743582.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Metaseiulus occidentalis]
Length = 83
Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 60/81 (74%), Positives = 71/81 (87%), Gaps = 1/81 (1%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
S LLP ELID+CIGS+I +IMK DKELVGTL GFD YVNMVLEDVTEYE +++GRR+TKL
Sbjct: 2 STLLPLELIDKCIGSRIHIIMKNDKELVGTLLGFDDYVNMVLEDVTEYENSSDGRRVTKL 61
Query: 66 DQILLNGNNIAILVPGGS-PD 85
DQI+LNG+NI ++VPGG PD
Sbjct: 62 DQIILNGSNITMMVPGGDIPD 82
>gi|449283162|gb|EMC89854.1| U6 snRNA-associated Sm-like protein LSm5, partial [Columba livia]
Length = 82
Score = 122 bits (305), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 57/75 (76%), Positives = 67/75 (89%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EI EGRRIT
Sbjct: 8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEIPPEGRRIT 67
Query: 64 KLDQILLNGNNIAIL 78
KLDQILLNGNNI ++
Sbjct: 68 KLDQILLNGNNITMV 82
>gi|296234717|ref|XP_002762581.1| PREDICTED: uncharacterized protein LOC100410554 [Callithrix
jacchus]
Length = 655
Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats.
Identities = 56/82 (68%), Positives = 69/82 (84%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
NPSQLLP EL+ +CIGS+I ++++ DKE+VG L G +VNMVLEDVTE+EI+ EGRRIT
Sbjct: 573 NPSQLLPLELVGKCIGSRIHIVLESDKEIVGALLGLADFVNMVLEDVTEFEISPEGRRIT 632
Query: 64 KLDQILLNGNNIAILVPGGSPD 85
KLDQILLNGNNI +LVPG P+
Sbjct: 633 KLDQILLNGNNITMLVPGEGPE 654
>gi|321472276|gb|EFX83246.1| hypothetical protein DAPPUDRAFT_230679 [Daphnia pulex]
Length = 89
Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 59/82 (71%), Positives = 69/82 (84%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
MA LLP EL+D+CIGS+I +IMK DKE+VGTL GFD +VNMVLEDV+E+E T EGR
Sbjct: 1 MAAPVPTLLPLELVDKCIGSRIHIIMKNDKEIVGTLLGFDDFVNMVLEDVSEFESTPEGR 60
Query: 61 RITKLDQILLNGNNIAILVPGG 82
R+TKLDQILLNGNNI +LVPGG
Sbjct: 61 RVTKLDQILLNGNNITMLVPGG 82
>gi|354485537|ref|XP_003504940.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Cricetulus griseus]
Length = 140
Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/71 (78%), Positives = 65/71 (91%)
Query: 12 ELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLN 71
EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLN
Sbjct: 65 ELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLN 124
Query: 72 GNNIAILVPGG 82
GNNI +LVPGG
Sbjct: 125 GNNITMLVPGG 135
>gi|428180050|gb|EKX48919.1| hypothetical protein GUITHDRAFT_93594 [Guillardia theta CCMP2712]
Length = 94
Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 60/78 (76%), Positives = 68/78 (87%), Gaps = 1/78 (1%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE-GRRITK 64
QLLP ELIDRCIGS+IW+I+KGDKE VGTL+GFD YVNMVLEDVTE+E+ + G R TK
Sbjct: 7 GQLLPLELIDRCIGSRIWIILKGDKEFVGTLQGFDDYVNMVLEDVTEFEVNPDGGYRETK 66
Query: 65 LDQILLNGNNIAILVPGG 82
LDQILLNGNNI +LVPGG
Sbjct: 67 LDQILLNGNNICMLVPGG 84
>gi|195011763|ref|XP_001983306.1| GH15826 [Drosophila grimshawi]
gi|195125111|ref|XP_002007026.1| GI12608 [Drosophila mojavensis]
gi|195374668|ref|XP_002046125.1| GJ12731 [Drosophila virilis]
gi|193896788|gb|EDV95654.1| GH15826 [Drosophila grimshawi]
gi|193918635|gb|EDW17502.1| GI12608 [Drosophila mojavensis]
gi|194153283|gb|EDW68467.1| GJ12731 [Drosophila virilis]
Length = 91
Score = 121 bits (304), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 58/79 (73%), Positives = 69/79 (87%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
N S L+P EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+L+DVTEYE T +GRRIT
Sbjct: 9 NISTLMPLELVDKCIGSRIHIIMKNDKEMVGTLLGFDDFVNMLLDDVTEYENTPDGRRIT 68
Query: 64 KLDQILLNGNNIAILVPGG 82
KLDQILLNGNNI +LVPGG
Sbjct: 69 KLDQILLNGNNITMLVPGG 87
>gi|21358059|ref|NP_648022.1| CG6610, isoform A [Drosophila melanogaster]
gi|442630491|ref|NP_001261461.1| CG6610, isoform B [Drosophila melanogaster]
gi|442630493|ref|NP_001261462.1| CG6610, isoform C [Drosophila melanogaster]
gi|194867419|ref|XP_001972067.1| GG15317 [Drosophila erecta]
gi|195337817|ref|XP_002035522.1| GM14749 [Drosophila sechellia]
gi|195492179|ref|XP_002093879.1| GE21536 [Drosophila yakuba]
gi|195588132|ref|XP_002083812.1| GD13931 [Drosophila simulans]
gi|7295386|gb|AAF50703.1| CG6610, isoform A [Drosophila melanogaster]
gi|21064593|gb|AAM29526.1| RE60135p [Drosophila melanogaster]
gi|190653850|gb|EDV51093.1| GG15317 [Drosophila erecta]
gi|194128615|gb|EDW50658.1| GM14749 [Drosophila sechellia]
gi|194179980|gb|EDW93591.1| GE21536 [Drosophila yakuba]
gi|194195821|gb|EDX09397.1| GD13931 [Drosophila simulans]
gi|220950876|gb|ACL87981.1| CG6610-PA [synthetic construct]
gi|220959480|gb|ACL92283.1| CG6610-PA [synthetic construct]
gi|440215357|gb|AGB94156.1| CG6610, isoform B [Drosophila melanogaster]
gi|440215358|gb|AGB94157.1| CG6610, isoform C [Drosophila melanogaster]
Length = 91
Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 58/79 (73%), Positives = 69/79 (87%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
N S L+P EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+L+DVTEYE T +GRRIT
Sbjct: 9 NISTLMPLELVDKCIGSRIHIIMKNDKEMVGTLLGFDDFVNMLLDDVTEYENTPDGRRIT 68
Query: 64 KLDQILLNGNNIAILVPGG 82
KLDQILLNGNNI +LVPGG
Sbjct: 69 KLDQILLNGNNITMLVPGG 87
>gi|193891015|gb|ACF28661.1| small nuclear ribonucleoprotein E [Amphidinium carterae]
Length = 94
Score = 121 bits (303), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 71/85 (83%), Gaps = 1/85 (1%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
++ PS LP LID+CIGS+IWVIMKGDKELVGTL+GFD YVNMVL+DV EY T EG+
Sbjct: 4 VSSGPS-YLPLALIDKCIGSRIWVIMKGDKELVGTLRGFDDYVNMVLDDVREYTFTPEGK 62
Query: 61 RITKLDQILLNGNNIAILVPGGSPD 85
++T+L+ ILLNGNNI ++VPGG P+
Sbjct: 63 KVTQLESILLNGNNITMMVPGGDPE 87
>gi|195427721|ref|XP_002061925.1| GK17260 [Drosophila willistoni]
gi|194158010|gb|EDW72911.1| GK17260 [Drosophila willistoni]
Length = 91
Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 57/79 (72%), Positives = 69/79 (87%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
N S L+P EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+L+DVTEYE T +GRR+T
Sbjct: 9 NISTLMPLELVDKCIGSRIHIIMKNDKEMVGTLLGFDDFVNMLLDDVTEYENTPDGRRVT 68
Query: 64 KLDQILLNGNNIAILVPGG 82
KLDQILLNGNNI +LVPGG
Sbjct: 69 KLDQILLNGNNITMLVPGG 87
>gi|393912158|gb|EFO25335.2| hypothetical protein LOAG_03146 [Loa loa]
Length = 111
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/76 (75%), Positives = 67/76 (88%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQ 67
LLP EL+D+CIGS+IWVIMKG+KE+VGTL GFD YVNMVLEDV EYE T +G+R+TKLD
Sbjct: 32 LLPLELVDKCIGSRIWVIMKGEKEIVGTLTGFDDYVNMVLEDVVEYENTVDGKRVTKLDT 91
Query: 68 ILLNGNNIAILVPGGS 83
ILLNGN+I +LVPGG
Sbjct: 92 ILLNGNHITMLVPGGE 107
>gi|170593543|ref|XP_001901523.1| U6 snRNA-associated Sm-like protein LSm5 [Brugia malayi]
gi|312071704|ref|XP_003138731.1| hypothetical protein LOAG_03146 [Loa loa]
gi|158590467|gb|EDP29082.1| U6 snRNA-associated Sm-like protein LSm5, putative [Brugia
malayi]
gi|402593447|gb|EJW87374.1| small nuclear ribonucleoprotein [Wuchereria bancrofti]
Length = 91
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/76 (75%), Positives = 67/76 (88%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQ 67
LLP EL+D+CIGS+IWVIMKG+KE+VGTL GFD YVNMVLEDV EYE T +G+R+TKLD
Sbjct: 12 LLPLELVDKCIGSRIWVIMKGEKEIVGTLTGFDDYVNMVLEDVVEYENTVDGKRVTKLDT 71
Query: 68 ILLNGNNIAILVPGGS 83
ILLNGN+I +LVPGG
Sbjct: 72 ILLNGNHITMLVPGGE 87
>gi|125979619|ref|XP_001353842.1| GA19721 [Drosophila pseudoobscura pseudoobscura]
gi|194752281|ref|XP_001958451.1| GF23512 [Drosophila ananassae]
gi|195171277|ref|XP_002026433.1| GL15546 [Drosophila persimilis]
gi|54640826|gb|EAL29577.1| GA19721 [Drosophila pseudoobscura pseudoobscura]
gi|190625733|gb|EDV41257.1| GF23512 [Drosophila ananassae]
gi|194111339|gb|EDW33382.1| GL15546 [Drosophila persimilis]
Length = 91
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 57/79 (72%), Positives = 69/79 (87%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
N + L+P EL+D+CIGS+I +IMK DKE+VGTL GFD +VNM+L+DVTEYE T +GRRIT
Sbjct: 9 NIATLMPLELVDKCIGSRIHIIMKNDKEMVGTLLGFDDFVNMLLDDVTEYENTPDGRRIT 68
Query: 64 KLDQILLNGNNIAILVPGG 82
KLDQILLNGNNI +LVPGG
Sbjct: 69 KLDQILLNGNNITMLVPGG 87
>gi|302697739|ref|XP_003038548.1| hypothetical protein SCHCODRAFT_13369 [Schizophyllum commune
H4-8]
gi|300112245|gb|EFJ03646.1| hypothetical protein SCHCODRAFT_13369 [Schizophyllum commune
H4-8]
Length = 84
Score = 120 bits (301), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 59/82 (71%), Positives = 66/82 (80%), Gaps = 1/82 (1%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQ+LP ELIDRCIGS+IWV+MK D E GTL GFD +VNMVLEDVTEYE TA GR+ T+L
Sbjct: 3 SQILPLELIDRCIGSRIWVVMKNDHEFTGTLLGFDDFVNMVLEDVTEYETTAAGRKKTQL 62
Query: 66 DQILLNGNNIAILVPGGSPDPE 87
Q LLNGNNI IL+P GS PE
Sbjct: 63 AQTLLNGNNICILIP-GSAGPE 83
>gi|392571152|gb|EIW64324.1| like-Sm ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 85
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/78 (71%), Positives = 66/78 (84%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQ+LP ELIDRCIGS+IWVIMK ++E GTL GFD +VNMVLEDVTEYE T +GR+ TKL
Sbjct: 3 SQILPLELIDRCIGSRIWVIMKSEREFTGTLLGFDDFVNMVLEDVTEYEHTPQGRKKTKL 62
Query: 66 DQILLNGNNIAILVPGGS 83
+Q LLNGNNI +L+PG S
Sbjct: 63 NQTLLNGNNICMLIPGSS 80
>gi|226467448|emb|CAX69600.1| U6 snRNA-associated Sm-like protein LSm5 [Schistosoma japonicum]
Length = 87
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/82 (69%), Positives = 69/82 (84%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
M+ QLLP EL+D+CIGS+I +IMK DKE+VGTL GFD YVNMVL DVTE+E TA+G+
Sbjct: 1 MSLTGPQLLPLELVDKCIGSRIHIIMKNDKEMVGTLLGFDGYVNMVLVDVTEFEFTAQGK 60
Query: 61 RITKLDQILLNGNNIAILVPGG 82
RITKL ILLNG+NIA++VPGG
Sbjct: 61 RITKLSHILLNGSNIAMMVPGG 82
>gi|256073118|ref|XP_002572879.1| hypothetical protein [Schistosoma mansoni]
gi|360045255|emb|CCD82803.1| hypothetical protein Smp_129760 [Schistosoma mansoni]
Length = 87
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/82 (69%), Positives = 68/82 (82%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
M+ QLLP EL+D+CIGSKI +IMK DKE+VGTL GFD YVNMVL DVTE+E TA+G+
Sbjct: 1 MSLTGPQLLPLELVDKCIGSKIHIIMKNDKEMVGTLLGFDSYVNMVLADVTEFEFTAQGK 60
Query: 61 RITKLDQILLNGNNIAILVPGG 82
RITKL ILLNG+NI ++VPGG
Sbjct: 61 RITKLPHILLNGSNIVMMVPGG 82
>gi|336376883|gb|EGO05218.1| hypothetical protein SERLA73DRAFT_174233 [Serpula lacrymans var.
lacrymans S7.3]
gi|336389815|gb|EGO30958.1| hypothetical protein SERLADRAFT_455383 [Serpula lacrymans var.
lacrymans S7.9]
Length = 85
Score = 119 bits (298), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/81 (70%), Positives = 67/81 (82%), Gaps = 1/81 (1%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQ+LP ELIDRCIGS+IWVIMK D+E GTL GFD +VNMVLEDVTEYE T +G++ TKL
Sbjct: 3 SQILPLELIDRCIGSRIWVIMKSDREFTGTLLGFDDFVNMVLEDVTEYETTPQGKKKTKL 62
Query: 66 DQILLNGNNIAILVPGGS-PD 85
Q LLNGNNI +L+PG + PD
Sbjct: 63 AQTLLNGNNICMLIPGSAGPD 83
>gi|443685344|gb|ELT88979.1| hypothetical protein CAPTEDRAFT_188465 [Capitella teleta]
Length = 85
Score = 119 bits (297), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 57/75 (76%), Positives = 65/75 (86%), Gaps = 1/75 (1%)
Query: 12 ELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLN 71
EL+D+CIGSKI ++MK DKE+VGTL GFD +VNMVLEDV EYE TAEGRR+T LDQILLN
Sbjct: 10 ELVDKCIGSKIHIVMKNDKEIVGTLLGFDDFVNMVLEDVVEYETTAEGRRVTTLDQILLN 69
Query: 72 GNNIAILVPGGS-PD 85
GNNI +LVPGG PD
Sbjct: 70 GNNITMLVPGGEGPD 84
>gi|358054346|dbj|GAA99272.1| hypothetical protein E5Q_05966 [Mixia osmundae IAM 14324]
Length = 83
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 53/78 (67%), Positives = 70/78 (89%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
+Q+LP ELID+CIGS++WV++K ++E+VGTL GFD +VNMVL+DVTEYE TA+GR+ TKL
Sbjct: 3 TQILPLELIDKCIGSRLWVVLKSEREIVGTLLGFDDFVNMVLDDVTEYENTAQGRKATKL 62
Query: 66 DQILLNGNNIAILVPGGS 83
Q LLNGNNIA+L+PGG+
Sbjct: 63 GQTLLNGNNIAMLIPGGA 80
>gi|355700152|gb|AES01357.1| LSM5-like protein, U6 small nuclear RNA associated [Mustela
putorius furo]
Length = 76
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/72 (77%), Positives = 65/72 (90%)
Query: 12 ELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLN 71
EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLN
Sbjct: 1 ELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLN 60
Query: 72 GNNIAILVPGGS 83
GNNI +LVPGG
Sbjct: 61 GNNITMLVPGGE 72
>gi|281343311|gb|EFB18895.1| hypothetical protein PANDA_010826 [Ailuropoda melanoleuca]
Length = 79
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 56/72 (77%), Positives = 65/72 (90%)
Query: 12 ELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLN 71
EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLN
Sbjct: 4 ELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLN 63
Query: 72 GNNIAILVPGGS 83
GNNI +LVPGG
Sbjct: 64 GNNITMLVPGGE 75
>gi|395334578|gb|EJF66954.1| Sm-like ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 85
Score = 118 bits (296), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 55/78 (70%), Positives = 65/78 (83%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQ+LP ELIDRCIGS+IWVIMK D+E GTL GFD +VNMVLEDVTEYE T +G++ T L
Sbjct: 3 SQILPLELIDRCIGSRIWVIMKNDREFTGTLLGFDDFVNMVLEDVTEYETTPQGKKKTTL 62
Query: 66 DQILLNGNNIAILVPGGS 83
+Q LLNGNNI +L+PG S
Sbjct: 63 NQTLLNGNNICMLIPGSS 80
>gi|389751535|gb|EIM92608.1| Sm-like ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 85
Score = 118 bits (295), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 58/83 (69%), Positives = 67/83 (80%), Gaps = 2/83 (2%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQ+LP ELIDRCIGS+IWVIMK ++E GTL GFD +VNMVLEDVTE+EIT+ GR+ T L
Sbjct: 3 SQILPLELIDRCIGSRIWVIMKNEREFTGTLLGFDDFVNMVLEDVTEFEITSAGRKKTAL 62
Query: 66 DQILLNGNNIAILVPG--GSPDP 86
Q LLNGNNI +LVPG G DP
Sbjct: 63 RQTLLNGNNICMLVPGSNGPEDP 85
>gi|322791094|gb|EFZ15676.1| hypothetical protein SINV_04240 [Solenopsis invicta]
Length = 83
Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 54/79 (68%), Positives = 69/79 (87%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
++ NPS LLP EL+D+CIGS+I +IMK DKE+VGTL+GFD +VNM+LEDVTE E T EGR
Sbjct: 5 VSTNPSTLLPLELVDKCIGSRIHIIMKNDKEIVGTLQGFDDFVNMLLEDVTESEATPEGR 64
Query: 61 RITKLDQILLNGNNIAILV 79
R+TKLDQILLNG+NI +++
Sbjct: 65 RVTKLDQILLNGSNITMVI 83
>gi|449551015|gb|EMD41979.1| hypothetical protein CERSUDRAFT_110522 [Ceriporiopsis
subvermispora B]
Length = 85
Score = 117 bits (294), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 57/81 (70%), Positives = 67/81 (82%), Gaps = 1/81 (1%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQ+LP ELIDRCIGS+IWVIMK D+E GTL GFD +VNMVLEDVTEYE T +G++ T+L
Sbjct: 3 SQILPLELIDRCIGSRIWVIMKSDREFTGTLLGFDDFVNMVLEDVTEYENTPQGKKKTQL 62
Query: 66 DQILLNGNNIAILVPGGS-PD 85
Q LLNGNNI +L+PG S PD
Sbjct: 63 AQTLLNGNNICMLIPGSSGPD 83
>gi|169843758|ref|XP_001828604.1| hypothetical protein CC1G_10275 [Coprinopsis cinerea
okayama7#130]
gi|116510312|gb|EAU93207.1| hypothetical protein CC1G_10275 [Coprinopsis cinerea
okayama7#130]
Length = 84
Score = 117 bits (293), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 55/76 (72%), Positives = 64/76 (84%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQ+LP ELIDRCIGSKIWV+MK D+E GTL GFD +VNMVLEDVTE+E T +GR+ TKL
Sbjct: 3 SQILPLELIDRCIGSKIWVVMKNDREFTGTLLGFDDFVNMVLEDVTEFENTPQGRKKTKL 62
Query: 66 DQILLNGNNIAILVPG 81
Q LLNGNNI +L+PG
Sbjct: 63 TQTLLNGNNICMLIPG 78
>gi|193890979|gb|ACF28643.1| small nuclear ribonucleoprotein E [Amphidinium carterae]
Length = 82
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 53/73 (72%), Positives = 65/73 (89%)
Query: 13 LIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNG 72
LID+CIGS+IWVIMKGDKELVGTL+GFD YVNMVL+DV EY T EG+++T+L+ ILLNG
Sbjct: 3 LIDKCIGSRIWVIMKGDKELVGTLRGFDDYVNMVLDDVREYTFTPEGKKVTQLESILLNG 62
Query: 73 NNIAILVPGGSPD 85
NNI ++VPGG P+
Sbjct: 63 NNITMMVPGGDPE 75
>gi|390597684|gb|EIN07083.1| like-Sm ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 84
Score = 117 bits (292), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 54/78 (69%), Positives = 65/78 (83%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQ+LP ELIDRCIGS+IWVIMK D+E GTL GFD +VNMVL+DVTE+E T EG++ T+L
Sbjct: 3 SQILPLELIDRCIGSRIWVIMKNDREFTGTLLGFDDFVNMVLDDVTEFETTPEGKKKTQL 62
Query: 66 DQILLNGNNIAILVPGGS 83
Q LLNGNNI +L+PG S
Sbjct: 63 AQTLLNGNNICMLIPGSS 80
>gi|170085071|ref|XP_001873759.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164651311|gb|EDR15551.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 86
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 56/83 (67%), Positives = 66/83 (79%), Gaps = 1/83 (1%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQ+LP ELIDRCIGS+IWVIMK D+E G L GFD +VNMVLEDVTEYE T +G++ T+L
Sbjct: 3 SQILPLELIDRCIGSRIWVIMKSDREFTGKLLGFDDFVNMVLEDVTEYETTPQGKKTTQL 62
Query: 66 DQILLNGNNIAILVPGG-SPDPE 87
Q LLNGNNI +L+PG PD E
Sbjct: 63 AQTLLNGNNICMLIPGSVGPDEE 85
>gi|426201795|gb|EKV51718.1| hypothetical protein AGABI2DRAFT_189942 [Agaricus bisporus var.
bisporus H97]
Length = 84
Score = 116 bits (291), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/78 (70%), Positives = 64/78 (82%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQ+LP ELIDRCIGSKIWV+MK D+E GTL GFD +VNMVLEDV EYE T EG++ TKL
Sbjct: 3 SQILPLELIDRCIGSKIWVVMKNDREFSGTLLGFDDFVNMVLEDVIEYETTPEGKKETKL 62
Query: 66 DQILLNGNNIAILVPGGS 83
Q LLNGNNI +L+PG +
Sbjct: 63 SQTLLNGNNICMLIPGST 80
>gi|453082042|gb|EMF10090.1| like-Sm ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 81
Score = 116 bits (291), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 58/80 (72%), Positives = 65/80 (81%), Gaps = 3/80 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELIDRC+GS IWVIMKGDKE GTL GFD +VNMVLEDVTEY+ T TKL
Sbjct: 3 SQLLPLELIDRCVGSPIWVIMKGDKEFSGTLMGFDDFVNMVLEDVTEYDYTGAH---TKL 59
Query: 66 DQILLNGNNIAILVPGGSPD 85
+ILLNGNN+A+L+PGG PD
Sbjct: 60 KKILLNGNNVAMLIPGGMPD 79
>gi|328856633|gb|EGG05753.1| hypothetical protein MELLADRAFT_87625 [Melampsora larici-populina
98AG31]
Length = 935
Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats.
Identities = 55/78 (70%), Positives = 62/78 (79%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
S +LP ELIDRCIGS+IWV+MK +E G L GFD YVNMVLEDVTEYE TAEG +IT L
Sbjct: 855 STILPLELIDRCIGSRIWVVMKTGREFTGKLLGFDDYVNMVLEDVTEYETTAEGHKITNL 914
Query: 66 DQILLNGNNIAILVPGGS 83
Q LLNGN I +LVPGG+
Sbjct: 915 KQTLLNGNQICMLVPGGN 932
>gi|409083153|gb|EKM83510.1| hypothetical protein AGABI1DRAFT_110162 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 84
Score = 116 bits (290), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 55/78 (70%), Positives = 64/78 (82%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQ+LP ELIDRCIGSKIWV+MK D+E GTL GFD +VNMVLEDV EYE T EG++ TKL
Sbjct: 3 SQILPLELIDRCIGSKIWVVMKNDREFSGTLLGFDDFVNMVLEDVIEYETTPEGKKETKL 62
Query: 66 DQILLNGNNIAILVPGGS 83
Q LLNGNNI +L+PG +
Sbjct: 63 AQTLLNGNNICMLIPGST 80
>gi|452980574|gb|EME80335.1| hypothetical protein MYCFIDRAFT_89886 [Pseudocercospora fijiensis
CIRAD86]
Length = 81
Score = 115 bits (289), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 57/80 (71%), Positives = 66/80 (82%), Gaps = 3/80 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
+QLLP ELIDRC+GS IWVIMKGDKE GTL+GFD +VNMVLEDVTEY+ T TKL
Sbjct: 3 TQLLPLELIDRCVGSPIWVIMKGDKEFSGTLQGFDDFVNMVLEDVTEYDYTGAH---TKL 59
Query: 66 DQILLNGNNIAILVPGGSPD 85
++ILLNGNNI +L+PGG PD
Sbjct: 60 NKILLNGNNICMLIPGGMPD 79
>gi|401413338|ref|XP_003886116.1| putative snRNP protein Lsm5 [Neospora caninum Liverpool]
gi|325120536|emb|CBZ56090.1| putative snRNP protein Lsm5 [Neospora caninum Liverpool]
Length = 118
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 63/77 (81%)
Query: 9 LPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQI 68
LP L+D+CIGS++W+IMKGDKEL GTL+GFD +VNMVL+DVTEY T G + TKL I
Sbjct: 24 LPLALVDKCIGSRMWIIMKGDKELAGTLRGFDDFVNMVLDDVTEYTFTPTGVKKTKLQSI 83
Query: 69 LLNGNNIAILVPGGSPD 85
LLNGNNI +LVPGG P+
Sbjct: 84 LLNGNNITMLVPGGDPE 100
>gi|403166042|ref|XP_003889979.1| U6 snRNA-associated Sm-like protein LSm5, variant [Puccinia
graminis f. sp. tritici CRL 75-36-700-3]
gi|375166047|gb|EHS63049.1| U6 snRNA-associated Sm-like protein LSm5, variant [Puccinia
graminis f. sp. tritici CRL 75-36-700-3]
Length = 84
Score = 115 bits (288), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 56/82 (68%), Positives = 66/82 (80%), Gaps = 1/82 (1%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
S +LP ELIDRCIGS+IWVIMK +E G L GFD YVNMVLEDVTE+E TAEG+++T L
Sbjct: 3 STILPLELIDRCIGSRIWVIMKTGREFTGKLLGFDDYVNMVLEDVTEFETTAEGQKVTNL 62
Query: 66 DQILLNGNNIAILVPGGS-PDP 86
Q LLNGN I +LVPGG+ P+P
Sbjct: 63 KQTLLNGNQICMLVPGGNGPEP 84
>gi|294885997|ref|XP_002771506.1| U6 small nuclear ribonucleoprotein E, putative [Perkinsus marinus
ATCC 50983]
gi|239875210|gb|EER03322.1| U6 small nuclear ribonucleoprotein E, putative [Perkinsus marinus
ATCC 50983]
Length = 97
Score = 115 bits (287), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 54/85 (63%), Positives = 72/85 (84%), Gaps = 2/85 (2%)
Query: 2 AHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE-GR 60
A PS LP L+D+C+GS+IWVIM+GD+ELVGTL+GFD YVNMVL+DVTEY I + G+
Sbjct: 13 ATGPS-FLPLALVDKCVGSRIWVIMRGDRELVGTLRGFDDYVNMVLDDVTEYTILPDGGK 71
Query: 61 RITKLDQILLNGNNIAILVPGGSPD 85
R+ K++ ILLNG+++A+LVPGGSP+
Sbjct: 72 RVDKIESILLNGSSVAMLVPGGSPE 96
>gi|66827081|ref|XP_646895.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|74859089|sp|Q55EX5.1|LSM5_DICDI RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm5
gi|60475011|gb|EAL72947.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 97
Score = 114 bits (285), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 53/77 (68%), Positives = 63/77 (81%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELI++CIGS+IW+ MK DKE VGTL GFD YVN+ L+DVTEYE T EG + KL
Sbjct: 14 SQLLPLELIEKCIGSRIWIAMKNDKEFVGTLLGFDAYVNIFLKDVTEYEYTPEGLKTVKL 73
Query: 66 DQILLNGNNIAILVPGG 82
D ILLNGN++ +LVPGG
Sbjct: 74 DNILLNGNHVCLLVPGG 90
>gi|237835661|ref|XP_002367128.1| snRNP protein Lsm5, putative [Toxoplasma gondii ME49]
gi|211964792|gb|EEA99987.1| snRNP protein Lsm5, putative [Toxoplasma gondii ME49]
gi|221485337|gb|EEE23618.1| snRNP protein Lsm5, putative [Toxoplasma gondii GT1]
gi|221506198|gb|EEE31833.1| snRNP protein Lsm5, putative [Toxoplasma gondii VEG]
Length = 119
Score = 114 bits (285), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 51/77 (66%), Positives = 63/77 (81%)
Query: 9 LPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQI 68
LP L+D+CIGS++W+IMKGDKEL GTL+GFD +VNMVL+DVTEY T G + TKL I
Sbjct: 25 LPLALVDKCIGSRMWIIMKGDKELAGTLRGFDDFVNMVLDDVTEYTFTPTGVKKTKLQSI 84
Query: 69 LLNGNNIAILVPGGSPD 85
LLNGN+I +LVPGG P+
Sbjct: 85 LLNGNSITMLVPGGDPE 101
>gi|398394357|ref|XP_003850637.1| hypothetical protein MYCGRDRAFT_81468 [Zymoseptoria tritici
IPO323]
gi|339470516|gb|EGP85613.1| hypothetical protein MYCGRDRAFT_81468 [Zymoseptoria tritici
IPO323]
Length = 81
Score = 114 bits (284), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 57/80 (71%), Positives = 65/80 (81%), Gaps = 3/80 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELIDRC+GS IWVIMKGDKE GTL GFD +VNMVLEDVTEY+ + TKL
Sbjct: 3 SQLLPLELIDRCVGSPIWVIMKGDKEFSGTLLGFDDFVNMVLEDVTEYDYSGAQ---TKL 59
Query: 66 DQILLNGNNIAILVPGGSPD 85
+ILLNGNN+A+L+PGG PD
Sbjct: 60 PKILLNGNNVAMLIPGGMPD 79
>gi|393218481|gb|EJD03969.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 85
Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/78 (67%), Positives = 63/78 (80%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQ+LP ELID CIGS+IWVIMK D+E GTL GFD +VNMVL+DVTEY+ EGR++T L
Sbjct: 3 SQVLPLELIDTCIGSRIWVIMKNDREFTGTLLGFDDFVNMVLDDVTEYQYLPEGRKVTML 62
Query: 66 DQILLNGNNIAILVPGGS 83
Q LLNGNNI +L+PG S
Sbjct: 63 RQTLLNGNNICMLIPGSS 80
>gi|452822058|gb|EME29081.1| U6 snRNA-associated Sm-like protein LSm5 [Galdieria sulphuraria]
Length = 89
Score = 113 bits (282), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/83 (63%), Positives = 66/83 (79%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
M+ +LP EL+D+CIGS+IWV+MK DKE G L+GFD +VNMVLEDV+EYE T+EG
Sbjct: 1 MSETIPPVLPLELVDKCIGSQIWVLMKTDKEFTGILRGFDQFVNMVLEDVSEYEWTSEGL 60
Query: 61 RITKLDQILLNGNNIAILVPGGS 83
T LDQILLNGNNI +L+PGG+
Sbjct: 61 IRTHLDQILLNGNNICVLIPGGA 83
>gi|296423698|ref|XP_002841390.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637628|emb|CAZ85581.1| unnamed protein product [Tuber melanosporum]
Length = 84
Score = 111 bits (278), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/77 (71%), Positives = 63/77 (81%), Gaps = 3/77 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP EL+D+C+GS+IWV+MKGDKE GTL GFD YVNMVLEDVTEYE T E KL
Sbjct: 3 SQLLPLELVDKCVGSRIWVVMKGDKEFSGTLVGFDDYVNMVLEDVTEYESTGEQ---VKL 59
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGNNI +L+PGG
Sbjct: 60 KKILLNGNNICMLIPGG 76
>gi|452837763|gb|EME39705.1| hypothetical protein DOTSEDRAFT_75376 [Dothistroma septosporum
NZE10]
Length = 80
Score = 111 bits (278), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 56/80 (70%), Positives = 64/80 (80%), Gaps = 3/80 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELIDRC+GS IWVIMKGDKE GTL GFD +VNMVLEDVTE++ T TKL
Sbjct: 3 SQLLPLELIDRCVGSPIWVIMKGDKEFSGTLLGFDDFVNMVLEDVTEHDYTGAK---TKL 59
Query: 66 DQILLNGNNIAILVPGGSPD 85
+ILLNGNN+ +L+PGG PD
Sbjct: 60 PKILLNGNNVCMLIPGGMPD 79
>gi|403221170|dbj|BAM39303.1| uncharacterized protein TOT_010000762 [Theileria orientalis
strain Shintoku]
Length = 90
Score = 111 bits (277), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 62/77 (80%)
Query: 9 LPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQI 68
LP LID+C+GSKIW+IMK DKE+ GTL+GFD Y+NMVLEDV +Y TAEG R T+L
Sbjct: 11 LPLALIDKCLGSKIWIIMKNDKEITGTLRGFDDYMNMVLEDVVDYTYTAEGVRTTELPDA 70
Query: 69 LLNGNNIAILVPGGSPD 85
L+NGN IA+LVPGG PD
Sbjct: 71 LVNGNYIAMLVPGGKPD 87
>gi|449295361|gb|EMC91383.1| hypothetical protein BAUCODRAFT_127288 [Baudoinia compniacensis
UAMH 10762]
Length = 83
Score = 111 bits (277), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 56/80 (70%), Positives = 64/80 (80%), Gaps = 3/80 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELIDRC+GS IWVIMKGDKE GTL GFD +VNMVLEDVTEY+ + TKL
Sbjct: 3 SQLLPLELIDRCVGSPIWVIMKGDKEFSGTLLGFDDFVNMVLEDVTEYDYSGAQ---TKL 59
Query: 66 DQILLNGNNIAILVPGGSPD 85
+ILLNGNNI +L+PGG P+
Sbjct: 60 PKILLNGNNICMLIPGGMPE 79
>gi|330801323|ref|XP_003288678.1| hypothetical protein DICPUDRAFT_152939 [Dictyostelium purpureum]
gi|325081300|gb|EGC34821.1| hypothetical protein DICPUDRAFT_152939 [Dictyostelium purpureum]
Length = 92
Score = 111 bits (277), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 51/76 (67%), Positives = 62/76 (81%)
Query: 7 QLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLD 66
Q+LP ELI++CIGS+IW+ MK DKE VGTL GFD YVN+ L+DVTEYE T EG + KLD
Sbjct: 11 QILPLELIEKCIGSRIWIAMKNDKEFVGTLLGFDAYVNIFLKDVTEYEYTPEGLKTIKLD 70
Query: 67 QILLNGNNIAILVPGG 82
ILLNGN++ +LVPGG
Sbjct: 71 NILLNGNHVCLLVPGG 86
>gi|261190750|ref|XP_002621784.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis
SLH14081]
gi|239591207|gb|EEQ73788.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis
SLH14081]
gi|239614892|gb|EEQ91879.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis ER-3]
gi|327352333|gb|EGE81190.1| small nuclear ribonucleoprotein [Ajellomyces dermatitidis ATCC
18188]
Length = 84
Score = 110 bits (276), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 55/77 (71%), Positives = 63/77 (81%), Gaps = 3/77 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELID+C+GSKIWV+MKGDKE GTL GFD YVNMVLEDVTE++ T TKL
Sbjct: 3 SQLLPLELIDKCVGSKIWVVMKGDKEFAGTLLGFDDYVNMVLEDVTEFDYTGAQ---TKL 59
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGNNI +L+PGG
Sbjct: 60 PKILLNGNNICMLIPGG 76
>gi|428672985|gb|EKX73898.1| U6 small nuclear ribonucleoprotein E, putative [Babesia equi]
Length = 88
Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 51/83 (61%), Positives = 64/83 (77%)
Query: 3 HNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRI 62
+ + LP LID+C+GSKIW+IMKGDKE+ G L+GFD Y+NMVLE+VTEY T EG +
Sbjct: 5 ESSACYLPLALIDKCLGSKIWIIMKGDKEIAGILRGFDDYMNMVLEEVTEYSFTPEGIKT 64
Query: 63 TKLDQILLNGNNIAILVPGGSPD 85
TKL L+NGN IA+LVPGG P+
Sbjct: 65 TKLSDALVNGNYIAMLVPGGKPE 87
>gi|393247655|gb|EJD55162.1| Sm-like ribonucleo protein [Auricularia delicata TFB-10046 SS5]
Length = 85
Score = 110 bits (276), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 57/83 (68%), Positives = 66/83 (79%), Gaps = 2/83 (2%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEG-RRITK 64
SQ+LP ELIDRCIGS+IWV+MK ++E GTL GFD +VNMVLEDVTEYE +G R+ TK
Sbjct: 3 SQILPLELIDRCIGSRIWVVMKTEREFTGTLLGFDDFVNMVLEDVTEYETLPDGSRKKTK 62
Query: 65 LDQILLNGNNIAILVPGGSPDPE 87
L Q LLNGNNI IL+P GS PE
Sbjct: 63 LRQTLLNGNNICILIP-GSTGPE 84
>gi|320032480|gb|EFW14433.1| small nuclear ribonucleoprotein [Coccidioides posadasii str.
Silveira]
Length = 84
Score = 110 bits (276), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 54/77 (70%), Positives = 64/77 (83%), Gaps = 3/77 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELID+C+GSKIWV+MKGD+E GTL GFD YVNMVLEDVTE++ TA TKL
Sbjct: 3 SQLLPLELIDKCVGSKIWVVMKGDREFSGTLLGFDDYVNMVLEDVTEFDYTAAQ---TKL 59
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGNN+ +L+PGG
Sbjct: 60 PKILLNGNNVCMLIPGG 76
>gi|296805413|ref|XP_002843531.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
gi|238844833|gb|EEQ34495.1| conserved hypothetical protein [Arthroderma otae CBS 113480]
Length = 84
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 55/77 (71%), Positives = 65/77 (84%), Gaps = 3/77 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELIDRC+GSKIWV+MKGDKE GTL GFD YVNMVLEDVTE++ + G+ TKL
Sbjct: 3 SQLLPLELIDRCVGSKIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYSG-GQ--TKL 59
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGNN+ +L+PGG
Sbjct: 60 SKILLNGNNVCMLIPGG 76
>gi|84998502|ref|XP_953972.1| (U6) snRNA-associated Sm-like protein [Theileria annulata]
gi|65304970|emb|CAI73295.1| (U6) snRNA-associated Sm-like protein, putative [Theileria
annulata]
Length = 90
Score = 110 bits (275), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 48/76 (63%), Positives = 63/76 (82%)
Query: 9 LPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQI 68
LP LID+C+GSKIW+IMK DKE+ GTL+GFD Y+NMVLEDV +Y +A+G + T+L+
Sbjct: 11 LPLALIDKCLGSKIWIIMKNDKEITGTLRGFDDYMNMVLEDVVDYSFSADGVKTTELNDA 70
Query: 69 LLNGNNIAILVPGGSP 84
L+NGNN+A+LVPGG P
Sbjct: 71 LVNGNNVAMLVPGGKP 86
>gi|367025621|ref|XP_003662095.1| hypothetical protein MYCTH_2302246 [Myceliophthora thermophila
ATCC 42464]
gi|347009363|gb|AEO56850.1| hypothetical protein MYCTH_2302246 [Myceliophthora thermophila
ATCC 42464]
Length = 85
Score = 110 bits (274), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 54/77 (70%), Positives = 63/77 (81%), Gaps = 3/77 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELID+C+GS+IWVIMKGDKE GTL GFD YVNMVLEDVTE++ + TKL
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKGDKEFAGTLVGFDDYVNMVLEDVTEFDYSGNH---TKL 59
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGNNI +L+PGG
Sbjct: 60 KKILLNGNNICMLIPGG 76
>gi|295657072|ref|XP_002789110.1| hypothetical protein PAAG_08979 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226284564|gb|EEH40130.1| hypothetical protein PAAG_08979 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 84
Score = 110 bits (274), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/77 (70%), Positives = 63/77 (81%), Gaps = 3/77 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELID+C+GSKIWV+MKGDKE GTL GFD YVNMVLEDVTE++ T TKL
Sbjct: 3 SQLLPLELIDKCVGSKIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYTGAQ---TKL 59
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGNN+ +L+PGG
Sbjct: 60 PKILLNGNNVCMLIPGG 76
>gi|16944624|emb|CAD11394.1| probable U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5 [Neurospora
crassa]
Length = 84
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/77 (68%), Positives = 63/77 (81%), Gaps = 3/77 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELID+C+GS+IWV+MKGDKE GTL GFD YVNMVLEDVTE++ + TKL
Sbjct: 3 SQLLPLELIDKCVGSRIWVVMKGDKEFAGTLVGFDDYVNMVLEDVTEFDYSGNH---TKL 59
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGNNI +L+PGG
Sbjct: 60 KKILLNGNNICMLIPGG 76
>gi|388579402|gb|EIM19726.1| LSM-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 87
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/78 (65%), Positives = 68/78 (87%), Gaps = 1/78 (1%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEG-RRITK 64
SQ+LP ELID+CIGS+IWVIMK ++E VGTL+GFD +VNMVL+DVTEY+I+ +G ++ +K
Sbjct: 3 SQILPLELIDKCIGSRIWVIMKNEREFVGTLQGFDDFVNMVLDDVTEYDISPDGTQKKSK 62
Query: 65 LDQILLNGNNIAILVPGG 82
L Q LLNGNN+ +L+PGG
Sbjct: 63 LRQTLLNGNNVCMLLPGG 80
>gi|340522327|gb|EGR52560.1| predicted protein [Trichoderma reesei QM6a]
Length = 84
Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/77 (71%), Positives = 63/77 (81%), Gaps = 3/77 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELID+C+GS+IWVIMKGDKE GTL GFD YVNMVLEDVTE++ T TKL
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYTGNH---TKL 59
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGNNI +L+PGG
Sbjct: 60 PKILLNGNNICMLIPGG 76
>gi|407921630|gb|EKG14771.1| hypothetical protein MPH_08046 [Macrophomina phaseolina MS6]
Length = 83
Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 55/77 (71%), Positives = 65/77 (84%), Gaps = 3/77 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELID+C+GSKIWV+MKGDKE GTL GFD YVNMVLEDVTE++ +G + TKL
Sbjct: 3 SQLLPLELIDKCVGSKIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDY--QGNQ-TKL 59
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGNNI +L+PGG
Sbjct: 60 SKILLNGNNICMLIPGG 76
>gi|340369286|ref|XP_003383179.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like
[Amphimedon queenslandica]
Length = 108
Score = 109 bits (272), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/70 (74%), Positives = 64/70 (91%), Gaps = 1/70 (1%)
Query: 14 IDRCIGSKIWVIMKG-DKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNG 72
+D+CIGS+I +IMK DKE+VGTL GFD +VN+VLEDVTE+E+T EGRRITKLD+ILLNG
Sbjct: 38 VDKCIGSRIHIIMKSSDKEIVGTLLGFDDFVNVVLEDVTEFEMTPEGRRITKLDEILLNG 97
Query: 73 NNIAILVPGG 82
NNIA+L+PGG
Sbjct: 98 NNIAMLIPGG 107
>gi|336473000|gb|EGO61160.1| hypothetical protein NEUTE1DRAFT_116005 [Neurospora tetrasperma
FGSC 2508]
gi|350293750|gb|EGZ74835.1| putative U6 SNRNA-associated SM-LIKE protein LSM5 [Neurospora
tetrasperma FGSC 2509]
gi|380092260|emb|CCC10036.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 84
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/77 (68%), Positives = 63/77 (81%), Gaps = 3/77 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELID+C+GS+IWV+MKGDKE GTL GFD YVNMVLEDVTE++ + TKL
Sbjct: 3 SQLLPLELIDKCVGSRIWVVMKGDKEFSGTLVGFDDYVNMVLEDVTEFDYSGNH---TKL 59
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGNNI +L+PGG
Sbjct: 60 KKILLNGNNICMLIPGG 76
>gi|358389647|gb|EHK27239.1| hypothetical protein TRIVIDRAFT_73167 [Trichoderma virens Gv29-8]
Length = 84
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/77 (70%), Positives = 63/77 (81%), Gaps = 3/77 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELID+C+GSKIWV+MKGDKE GTL GFD YVNMVLEDVTE++ + TKL
Sbjct: 3 SQLLPLELIDKCVGSKIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYSGNH---TKL 59
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGNNI +L+PGG
Sbjct: 60 PKILLNGNNICMLIPGG 76
>gi|315045688|ref|XP_003172219.1| small nuclear ribonucleoprotein [Arthroderma gypseum CBS 118893]
gi|311342605|gb|EFR01808.1| small nuclear ribonucleoprotein [Arthroderma gypseum CBS 118893]
Length = 84
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/77 (70%), Positives = 65/77 (84%), Gaps = 3/77 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELID+C+GSKIWV+MKGDKE GTL GFD YVNMVLEDVTE++ + G+ TKL
Sbjct: 3 SQLLPLELIDKCVGSKIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYSG-GQ--TKL 59
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGNN+ +L+PGG
Sbjct: 60 SKILLNGNNVCMLIPGG 76
>gi|327304591|ref|XP_003236987.1| small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
gi|326459985|gb|EGD85438.1| small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
Length = 84
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/77 (68%), Positives = 65/77 (84%), Gaps = 3/77 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELID+C+GSKIW++MKGDKE GTL GFD YVNMVLEDVTE++ + G+ TKL
Sbjct: 3 SQLLPLELIDKCVGSKIWIVMKGDKEFCGTLLGFDDYVNMVLEDVTEFDYSG-GQ--TKL 59
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGNN+ +L+PGG
Sbjct: 60 SKILLNGNNVCMLIPGG 76
>gi|392867674|gb|EAS29072.2| U6 snRNA-associated Sm-like protein LSm5 [Coccidioides immitis
RS]
Length = 84
Score = 108 bits (271), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 53/77 (68%), Positives = 63/77 (81%), Gaps = 3/77 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELID+C+GSKIWV+MKGD+E GTL GFD YVNMVLEDVTE++ T TKL
Sbjct: 3 SQLLPLELIDKCVGSKIWVVMKGDREFSGTLLGFDDYVNMVLEDVTEFDYTGAQ---TKL 59
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGNN+ +L+PGG
Sbjct: 60 PKILLNGNNVCMLIPGG 76
>gi|358392255|gb|EHK41659.1| hypothetical protein TRIATDRAFT_250596 [Trichoderma atroviride
IMI 206040]
Length = 84
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 53/77 (68%), Positives = 63/77 (81%), Gaps = 3/77 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELID+C+GS+IWV+MKGDKE GTL GFD YVNMVLEDVTE++ + TKL
Sbjct: 3 SQLLPLELIDKCVGSRIWVVMKGDKEFSGTLMGFDDYVNMVLEDVTEFDYSGNH---TKL 59
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGNNI +L+PGG
Sbjct: 60 PKILLNGNNICMLIPGG 76
>gi|342878459|gb|EGU79796.1| hypothetical protein FOXB_09655 [Fusarium oxysporum Fo5176]
gi|408388349|gb|EKJ68035.1| hypothetical protein FPSE_11846 [Fusarium pseudograminearum
CS3096]
Length = 83
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 54/77 (70%), Positives = 63/77 (81%), Gaps = 3/77 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELID+C+GS+IWVIMKGDKE GTL GFD YVNMVLEDVTE++ + TKL
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKGDKEFSGTLVGFDDYVNMVLEDVTEFDYSGNH---TKL 59
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGNNI +L+PGG
Sbjct: 60 PKILLNGNNICMLIPGG 76
>gi|281208052|gb|EFA82230.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 86
Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 62/76 (81%)
Query: 7 QLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLD 66
Q+LP ELI++CIGS+IW+ MK DKE VGTL GFD YVN+ L+DVTEYE T EG + KL+
Sbjct: 5 QVLPLELIEKCIGSRIWICMKNDKEFVGTLLGFDTYVNIFLKDVTEYEFTPEGIKPIKLE 64
Query: 67 QILLNGNNIAILVPGG 82
ILLNGN++ +LVPGG
Sbjct: 65 TILLNGNHVCLLVPGG 80
>gi|302909361|ref|XP_003050056.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256730993|gb|EEU44343.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 83
Score = 108 bits (270), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/77 (70%), Positives = 63/77 (81%), Gaps = 3/77 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELID+C+GS+IWVIMKGDKE GTL GFD YVNMVLEDVTE++ + TKL
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYSGNH---TKL 59
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGNNI +L+PGG
Sbjct: 60 PKILLNGNNICMLIPGG 76
>gi|121711305|ref|XP_001273268.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
clavatus NRRL 1]
gi|119401419|gb|EAW11842.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
clavatus NRRL 1]
Length = 83
Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 54/77 (70%), Positives = 66/77 (85%), Gaps = 3/77 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELID+C+GS+IWVIMKGDKE GTL GFD YVNMVLEDVTE++ + G +I KL
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYS--GAQI-KL 59
Query: 66 DQILLNGNNIAILVPGG 82
++ILLNGNN+ +L+PGG
Sbjct: 60 NKILLNGNNVCMLIPGG 76
>gi|310792345|gb|EFQ27872.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 82
Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 63/77 (81%), Gaps = 3/77 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
+QLLP ELID+C+GS+IWV+MKGDKE GTL GFD YVNMVLEDVTE++ + TKL
Sbjct: 3 AQLLPLELIDKCVGSRIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYSGNH---TKL 59
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGNNI +L+PGG
Sbjct: 60 SKILLNGNNICMLIPGG 76
>gi|302421256|ref|XP_003008458.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|261351604|gb|EEY14032.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|346974640|gb|EGY18092.1| hypothetical protein VDAG_08426 [Verticillium dahliae VdLs.17]
Length = 80
Score = 108 bits (269), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 53/77 (68%), Positives = 63/77 (81%), Gaps = 3/77 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELID+C+GS+IWVIMKGDKE GTL GFD YVNMVLEDVTE++ + + KL
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKGDKEFSGTLTGFDDYVNMVLEDVTEFDYSGQH---VKL 59
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGNNI +L+PGG
Sbjct: 60 PKILLNGNNICMLIPGG 76
>gi|154303271|ref|XP_001552043.1| predicted protein [Botryotinia fuckeliana B05.10]
gi|347841641|emb|CCD56213.1| similar to U6 snRNA-associated Sm-like protein LSm5 [Botryotinia
fuckeliana]
Length = 84
Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 54/77 (70%), Positives = 63/77 (81%), Gaps = 2/77 (2%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELID+C+GSKIWV+MKGDKE GTL GFD YVNMVLEDV E++ + + TKL
Sbjct: 3 SQLLPLELIDKCVGSKIWVVMKGDKEFTGTLTGFDDYVNMVLEDVIEFDHQSGSQ--TKL 60
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGN IA+LVPGG
Sbjct: 61 PKILLNGNGIAMLVPGG 77
>gi|380474440|emb|CCF45778.1| U6 snRNA-associated Sm-like protein LSm5 [Colletotrichum
higginsianum]
Length = 82
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 53/77 (68%), Positives = 63/77 (81%), Gaps = 3/77 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELID+C+GS+IWV+MKGDKE GTL GFD YVNMVLEDVTE++ + TKL
Sbjct: 3 SQLLPLELIDKCVGSRIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYSGNH---TKL 59
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGNNI +L+PGG
Sbjct: 60 PKILLNGNNICMLIPGG 76
>gi|71033371|ref|XP_766327.1| U6 small nuclear ribonucleoprotein E [Theileria parva strain
Muguga]
gi|68353284|gb|EAN34044.1| U6 small nuclear ribonucleoprotein E, putative [Theileria parva]
Length = 90
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 47/76 (61%), Positives = 62/76 (81%)
Query: 9 LPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQI 68
LP LID+C+GSKIW+IMK DKE+ GTL+GFD Y+NMVLEDV +Y + +G + T+L+
Sbjct: 11 LPLALIDKCLGSKIWIIMKNDKEITGTLRGFDDYMNMVLEDVVDYSFSPDGVKTTELNDA 70
Query: 69 LLNGNNIAILVPGGSP 84
L+NGNN+A+LVPGG P
Sbjct: 71 LVNGNNVAMLVPGGKP 86
>gi|400596491|gb|EJP64262.1| putative U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM5 [Beauveria
bassiana ARSEF 2860]
Length = 82
Score = 107 bits (268), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 54/77 (70%), Positives = 63/77 (81%), Gaps = 3/77 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELID+C+GS+IWVIMKG+KE GTL GFD YVNMVLEDVTE++ T TKL
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKGEKEFSGTLVGFDDYVNMVLEDVTEFDYTGNH---TKL 59
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGNNI +L+PGG
Sbjct: 60 PKILLNGNNICMLIPGG 76
>gi|156053688|ref|XP_001592770.1| U6 snRNA-associated Sm-like protein LSm5 [Sclerotinia
sclerotiorum 1980]
gi|154703472|gb|EDO03211.1| U6 snRNA-associated Sm-like protein LSm5 [Sclerotinia
sclerotiorum 1980 UF-70]
Length = 84
Score = 107 bits (268), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 54/77 (70%), Positives = 63/77 (81%), Gaps = 2/77 (2%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELID+C+GSKIWV+MKGDKE GTL GFD YVNMVLEDV E++ + + TKL
Sbjct: 3 SQLLPLELIDKCVGSKIWVVMKGDKEFTGTLTGFDDYVNMVLEDVIEFDHQSGNQ--TKL 60
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGN IA+LVPGG
Sbjct: 61 PKILLNGNGIAMLVPGG 77
>gi|403166044|ref|XP_003325954.2| U6 snRNA-associated Sm-like protein LSm5 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|375166048|gb|EFP81535.2| U6 snRNA-associated Sm-like protein LSm5 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 128
Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 52/82 (63%), Positives = 62/82 (75%), Gaps = 3/82 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
S +LP ELIDRCIGS+IWVIMK +E G L GFD YVNMVLEDVTE+E TAEG+++T L
Sbjct: 3 STILPLELIDRCIGSRIWVIMKTGREFTGKLLGFDDYVNMVLEDVTEFETTAEGQKVTNL 62
Query: 66 DQILLNGNNIAIL---VPGGSP 84
Q LLNGN I ++ +P SP
Sbjct: 63 KQTLLNGNQICMVSGSIPMSSP 84
>gi|440897230|gb|ELR48967.1| hypothetical protein M91_08025 [Bos grunniens mutus]
Length = 81
Score = 107 bits (267), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 50/73 (68%), Positives = 63/73 (86%), Gaps = 1/73 (1%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
NPSQLLP EL+D+CI S+I ++M+ DKE+VGTL+GFD + MVLEDVTE+E+T +G RIT
Sbjct: 8 NPSQLLPQELVDKCIASRICIVMQSDKEIVGTLQGFDGFGTMVLEDVTEFEVTPQG-RIT 66
Query: 64 KLDQILLNGNNIA 76
KLD+ILLNGNN A
Sbjct: 67 KLDEILLNGNNNA 79
>gi|323507716|emb|CBQ67587.1| probable U6 snRNA-associated Sm-like protein LSm5 [Sporisorium
reilianum SRZ2]
Length = 103
Score = 107 bits (266), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 53/75 (70%), Positives = 61/75 (81%), Gaps = 1/75 (1%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEG-RRITKLD 66
+LP ELID+CIGS IWVIMK D+E GTL GFD YVNMVLEDVTEYE T +G ++ TKL
Sbjct: 22 ILPLELIDKCIGSSIWVIMKTDREFSGTLLGFDDYVNMVLEDVTEYETTPDGKKKKTKLG 81
Query: 67 QILLNGNNIAILVPG 81
Q LLNGNNI +L+PG
Sbjct: 82 QTLLNGNNICMLIPG 96
>gi|70987204|ref|XP_749081.1| small nuclear ribonucleoprotein (LSM5) [Aspergillus fumigatus
Af293]
gi|66846711|gb|EAL87043.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
fumigatus Af293]
gi|159123148|gb|EDP48268.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
fumigatus A1163]
Length = 83
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 54/77 (70%), Positives = 65/77 (84%), Gaps = 3/77 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELID+C+GS+IWVIMKGDKE GTL GFD YVNMVLEDVTE++ + G ++ KL
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYS--GAQV-KL 59
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGNNI +L+PGG
Sbjct: 60 PKILLNGNNICMLIPGG 76
>gi|255953479|ref|XP_002567492.1| Pc21g04460 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589203|emb|CAP95343.1| Pc21g04460 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 83
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/77 (68%), Positives = 65/77 (84%), Gaps = 3/77 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELID+C+GS+IWV+MKGDKE GTL GFD YVNMV+EDVTE++ T G +I KL
Sbjct: 3 SQLLPLELIDKCVGSRIWVVMKGDKEFSGTLLGFDDYVNMVMEDVTEFDYT--GAQI-KL 59
Query: 66 DQILLNGNNIAILVPGG 82
++LLNGNNI +L+PGG
Sbjct: 60 PKLLLNGNNICMLIPGG 76
>gi|259484847|tpe|CBF81418.1| TPA: small nuclear ribonucleoprotein (LSM5), putative
(AFU_orthologue; AFUA_7G04280) [Aspergillus nidulans
FGSC A4]
Length = 129
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/77 (68%), Positives = 64/77 (83%), Gaps = 3/77 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELID+C+GS+IW+IMK DKE GTL GFD YVNMVLEDVTE++ T G ++ KL
Sbjct: 49 SQLLPLELIDKCVGSRIWIIMKNDKEFSGTLLGFDDYVNMVLEDVTEFDYT--GAQV-KL 105
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGNNI +L+PGG
Sbjct: 106 PKILLNGNNICMLIPGG 122
>gi|378725612|gb|EHY52071.1| U6 snRNA-associated Sm-like protein LSm5 [Exophiala dermatitidis
NIH/UT8656]
Length = 84
Score = 106 bits (265), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 62/77 (80%), Gaps = 3/77 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELID+C+GS+IWV+MKGDK+ GTL GFD YVNMVLEDV E++ T TKL
Sbjct: 3 SQLLPLELIDKCVGSRIWVVMKGDKDFAGTLLGFDDYVNMVLEDVIEFDYTGAQ---TKL 59
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGNNI +L+PGG
Sbjct: 60 PKILLNGNNICMLIPGG 76
>gi|402081161|gb|EJT76306.1| U6 snRNA-associated Sm-like protein LSm5 [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 82
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 62/77 (80%), Gaps = 3/77 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
+QLLP ELID+C+GS+IWVIMKGDKE G L GFD YVNMVLEDVTE++ + TKL
Sbjct: 3 TQLLPLELIDKCVGSRIWVIMKGDKEFSGLLVGFDDYVNMVLEDVTEFDYSGNH---TKL 59
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGNNI +L+PGG
Sbjct: 60 SKILLNGNNICMLIPGG 76
>gi|212532417|ref|XP_002146365.1| small nuclear ribonucleoprotein (LSM5), putative [Talaromyces
marneffei ATCC 18224]
gi|210071729|gb|EEA25818.1| small nuclear ribonucleoprotein (LSM5), putative [Talaromyces
marneffei ATCC 18224]
Length = 83
Score = 106 bits (264), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 51/77 (66%), Positives = 61/77 (79%), Gaps = 3/77 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELID+C+GSKIWV+MKGDKE GTL GFD YVNMVLEDVTE++ ++ K
Sbjct: 3 SQLLPLELIDKCVGSKIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYAGNQEKLPK- 61
Query: 66 DQILLNGNNIAILVPGG 82
ILLNGNN+ +L+PGG
Sbjct: 62 --ILLNGNNVCMLIPGG 76
>gi|313215037|emb|CBY41217.1| unnamed protein product [Oikopleura dioica]
Length = 69
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/68 (70%), Positives = 61/68 (89%)
Query: 5 PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK 64
SQL+P EL+D+CIGS+I +IM+ DKE+VGTL GFD +VNMVLEDVTEYE T++G++ITK
Sbjct: 2 ASQLMPLELVDKCIGSRIHIIMRNDKEIVGTLLGFDEFVNMVLEDVTEYEATSDGKKITK 61
Query: 65 LDQILLNG 72
L+QILLNG
Sbjct: 62 LEQILLNG 69
>gi|440465859|gb|ELQ35159.1| hypothetical protein OOU_Y34scaffold00725g17 [Magnaporthe oryzae
Y34]
Length = 82
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/77 (66%), Positives = 62/77 (80%), Gaps = 3/77 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
+QLLP ELID+C+GS+IWVIMKGDKE G L GFD YVNMVLEDVTE++ + TK+
Sbjct: 3 TQLLPLELIDKCVGSRIWVIMKGDKEFSGLLVGFDDYVNMVLEDVTEFDYSG---NYTKM 59
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGNNI +L+PGG
Sbjct: 60 SKILLNGNNICMLIPGG 76
>gi|164657261|ref|XP_001729757.1| hypothetical protein MGL_3301 [Malassezia globosa CBS 7966]
gi|159103650|gb|EDP42543.1| hypothetical protein MGL_3301 [Malassezia globosa CBS 7966]
Length = 87
Score = 105 bits (263), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 58/77 (75%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
+ +LP EL+DRCIGS IWV+MKG +E VG L GFD YVNMVLED EYE T +G + T L
Sbjct: 5 ATILPLELVDRCIGSSIWVVMKGQREFVGKLLGFDDYVNMVLEDAVEYEETPDGYKKTHL 64
Query: 66 DQILLNGNNIAILVPGG 82
+ LLNGNNI L+PGG
Sbjct: 65 SKTLLNGNNICTLIPGG 81
>gi|402217704|gb|EJT97783.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 85
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/82 (65%), Positives = 62/82 (75%), Gaps = 1/82 (1%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQ+LP ELIDRCIGS+IWVI K ++E G L GFD +VNMVLEDVTE+ T EG + KL
Sbjct: 3 SQILPLELIDRCIGSRIWVITKTEREFAGRLLGFDDFVNMVLEDVTEFITTEEGVKKVKL 62
Query: 66 DQILLNGNNIAILVPGGSPDPE 87
Q LLNGNNI +LVP GS PE
Sbjct: 63 QQTLLNGNNICMLVP-GSNGPE 83
>gi|317139035|ref|XP_003189120.1| U6 snRNA-associated Sm-like protein LSm5 [Aspergillus oryzae
RIB40]
Length = 102
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 53/77 (68%), Positives = 64/77 (83%), Gaps = 3/77 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELID+C+GS+IWVIMK DKE GTL GFD YVNMVLEDVTE++ + G +I KL
Sbjct: 22 SQLLPLELIDKCVGSRIWVIMKNDKEFAGTLLGFDDYVNMVLEDVTEFDYS--GAQI-KL 78
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGNN+ +L+PGG
Sbjct: 79 PKILLNGNNVCMLIPGG 95
>gi|389623205|ref|XP_003709256.1| U6 snRNA-associated Sm-like protein LSm5 [Magnaporthe oryzae
70-15]
gi|351648785|gb|EHA56644.1| U6 snRNA-associated Sm-like protein LSm5 [Magnaporthe oryzae
70-15]
gi|440486474|gb|ELQ66335.1| hypothetical protein OOW_P131scaffold00400g22 [Magnaporthe oryzae
P131]
Length = 82
Score = 105 bits (262), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 51/77 (66%), Positives = 62/77 (80%), Gaps = 3/77 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
+QLLP ELID+C+GS+IWVIMKGDKE G L GFD YVNMVLEDVTE++ + TK+
Sbjct: 3 TQLLPLELIDKCVGSRIWVIMKGDKEFSGLLVGFDDYVNMVLEDVTEFDYSGNH---TKM 59
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGNNI +L+PGG
Sbjct: 60 SKILLNGNNICMLIPGG 76
>gi|443896082|dbj|GAC73426.1| U6 snRNA-associated Sm-like protein [Pseudozyma antarctica T-34]
Length = 103
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/81 (66%), Positives = 63/81 (77%), Gaps = 2/81 (2%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEG-RRITKLD 66
+LP ELID+CIGS IWVIMK ++E GTL GFD YVNMVLEDVTEYE +G ++ TKL
Sbjct: 22 ILPLELIDKCIGSSIWVIMKSEREFSGTLLGFDDYVNMVLEDVTEYETAQDGKKKKTKLG 81
Query: 67 QILLNGNNIAILVPGGSPDPE 87
Q LLNGNNI +L+P GS PE
Sbjct: 82 QTLLNGNNICMLIP-GSEGPE 101
>gi|167517977|ref|XP_001743329.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778428|gb|EDQ92043.1| predicted protein [Monosiga brevicollis MX1]
Length = 83
Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 55/82 (67%), Positives = 64/82 (78%), Gaps = 1/82 (1%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
+ L P EL+D+CIGS+I VIMK DKELVGTL GFD +VNMVLEDV EY IT GR + +
Sbjct: 3 AALQPLELVDKCIGSRIHVIMKNDKELVGTLLGFDDFVNMVLEDVKEYVITPNGREVHRQ 62
Query: 66 DQILLNGNNIAILVPGGSPDPE 87
+ILLNG+NIAILVP GS PE
Sbjct: 63 KKILLNGSNIAILVP-GSDGPE 83
>gi|238482069|ref|XP_002372273.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
flavus NRRL3357]
gi|220700323|gb|EED56661.1| small nuclear ribonucleoprotein (LSM5), putative [Aspergillus
flavus NRRL3357]
Length = 83
Score = 105 bits (261), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 53/77 (68%), Positives = 64/77 (83%), Gaps = 3/77 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELID+C+GS+IWVIMK DKE GTL GFD YVNMVLEDVTE++ + G +I KL
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKNDKEFAGTLLGFDDYVNMVLEDVTEFDYS--GAQI-KL 59
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGNN+ +L+PGG
Sbjct: 60 PKILLNGNNVCMLIPGG 76
>gi|412991139|emb|CCO15984.1| predicted protein [Bathycoccus prasinos]
Length = 97
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 53/83 (63%), Positives = 64/83 (77%), Gaps = 3/83 (3%)
Query: 3 HNPSQLLPSELIDRCIGSKIWVIMK-GDKELVGTLKGFDVYVNMVLEDVTEYEITAE-GR 60
+NPS LLPSEL+D+C+ K+W+IMK G KE GTLKGFDVYVN VLED EY+ E G+
Sbjct: 12 NNPSLLLPSELVDKCVNEKVWIIMKNGHKEFTGTLKGFDVYVNCVLEDAIEYDRDQESGK 71
Query: 61 RITK-LDQILLNGNNIAILVPGG 82
TK L+ ILLNGNNI ++VPGG
Sbjct: 72 ETTKNLESILLNGNNICMIVPGG 94
>gi|317034233|ref|XP_001396223.2| U6 snRNA-associated Sm-like protein LSm5 [Aspergillus niger CBS
513.88]
gi|358373053|dbj|GAA89653.1| small nuclear ribonucleoprotein [Aspergillus kawachii IFO 4308]
Length = 83
Score = 104 bits (260), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 64/77 (83%), Gaps = 3/77 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELID+C+GS+IWVIMK DKE GTL GFD YVNMVLEDVTE++ + G ++ KL
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKNDKEFAGTLLGFDDYVNMVLEDVTEFDYS--GSQV-KL 59
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGNN+ +L+PGG
Sbjct: 60 PKILLNGNNVCMLIPGG 76
>gi|346325284|gb|EGX94881.1| small nuclear ribonucleoprotein [Cordyceps militaris CM01]
Length = 83
Score = 104 bits (260), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 53/77 (68%), Positives = 61/77 (79%), Gaps = 2/77 (2%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELID+C+GS+IWVIMKG+KE GTL GFD YVNMVLEDVTE+ TKL
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKGEKEFSGTLVGFDDYVNMVLEDVTEFSDYTGNH--TKL 60
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGNNI +L+PGG
Sbjct: 61 PKILLNGNNICMLIPGG 77
>gi|328772543|gb|EGF82581.1| hypothetical protein BATDEDRAFT_9366, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 69
Score = 104 bits (259), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 47/68 (69%), Positives = 57/68 (83%)
Query: 12 ELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLN 71
EL+DRC+GSK+WVIMKGDKE GTL GFD +VNMVLEDVTEYE+T+ G R DQ+LLN
Sbjct: 2 ELVDRCVGSKLWVIMKGDKEFTGTLLGFDDFVNMVLEDVTEYEMTSTGIRTEHFDQLLLN 61
Query: 72 GNNIAILV 79
GNNI +++
Sbjct: 62 GNNICMVM 69
>gi|320592276|gb|EFX04715.1| small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 80
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/77 (66%), Positives = 65/77 (84%), Gaps = 3/77 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELID+C+GS+IWVIMKG++E GTL GFD YVNMVLE+VTE++ + G+ TK+
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKGEREFSGTLVGFDDYVNMVLEEVTEFDYSG-GQ--TKM 59
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGNNI +L+PGG
Sbjct: 60 SKILLNGNNICMLIPGG 76
>gi|345567853|gb|EGX50755.1| hypothetical protein AOL_s00054g841 [Arthrobotrys oligospora ATCC
24927]
Length = 81
Score = 103 bits (258), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 52/77 (67%), Positives = 63/77 (81%), Gaps = 4/77 (5%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQ+LP EL+D+C+GSKIWV+MK +KE GTL GFD YVNMVLEDVTEY+ G +I KL
Sbjct: 3 SQILPLELVDKCVGSKIWVVMKSEKEFSGTLVGFDDYVNMVLEDVTEYD---AGEQI-KL 58
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGNNI +L+PGG
Sbjct: 59 KKILLNGNNICMLIPGG 75
>gi|225681342|gb|EEH19626.1| predicted protein [Paracoccidioides brasiliensis Pb03]
Length = 130
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 54/81 (66%), Positives = 62/81 (76%), Gaps = 6/81 (7%)
Query: 5 PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK 64
SQLLP ELID+C+GSKIWV+MKGDKE GTL GFD YVNMVLEDVTE++ T TK
Sbjct: 2 ASQLLPLELIDKCVGSKIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYTGAQ---TK 58
Query: 65 LDQILLNGNNI---AILVPGG 82
L +ILLNGNN+ A L+ GG
Sbjct: 59 LPKILLNGNNVCMLAYLIHGG 79
>gi|115395198|ref|XP_001213486.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114193055|gb|EAU34755.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 83
Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 51/77 (66%), Positives = 61/77 (79%), Gaps = 3/77 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELID+C+GS+IWVIMK DKE GTL GFD YVNMVLEDVTE++ + KL
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKNDKEFSGTLLGFDDYVNMVLEDVTEFDYSGTQE---KL 59
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGNN+ +L+PGG
Sbjct: 60 PKILLNGNNVCMLIPGG 76
>gi|388852511|emb|CCF53913.1| probable U6 snRNA-associated Sm-like protein LSm5 [Ustilago hordei]
Length = 103
Score = 103 bits (256), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 54/81 (66%), Positives = 63/81 (77%), Gaps = 2/81 (2%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEG-RRITKLD 66
+LP ELID+CIGS IWVIMK D+E GTL GFD YVNMVLEDVTEYE +G ++ T+L
Sbjct: 22 ILPLELIDKCIGSSIWVIMKTDREFSGTLLGFDDYVNMVLEDVTEYETCLDGKKKKTELG 81
Query: 67 QILLNGNNIAILVPGGSPDPE 87
Q LLNGNNI +L+P GS PE
Sbjct: 82 QTLLNGNNICMLIP-GSEGPE 101
>gi|323449072|gb|EGB04963.1| hypothetical protein AURANDRAFT_9330 [Aureococcus
anophagefferens]
Length = 72
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 52/79 (65%), Positives = 67/79 (84%), Gaps = 7/79 (8%)
Query: 7 QLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLD 66
+LLP EL+D+CIGS+IWVIMKGDKE+VGTL+GFD Y VL+DVTEY +G + T+LD
Sbjct: 1 RLLPLELVDKCIGSRIWVIMKGDKEVVGTLRGFDEY---VLDDVTEY---CDGAK-TQLD 53
Query: 67 QILLNGNNIAILVPGGSPD 85
QILLNGNN++++VPGG P+
Sbjct: 54 QILLNGNNVSMMVPGGDPE 72
>gi|156405924|ref|XP_001640981.1| predicted protein [Nematostella vectensis]
gi|156228118|gb|EDO48918.1| predicted protein [Nematostella vectensis]
Length = 86
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 62/77 (80%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +V+++ E T EGRRITKL
Sbjct: 5 SQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVSILKNVFFCSENTPEGRRITKL 64
Query: 66 DQILLNGNNIAILVPGG 82
DQILLNGNNI +L+PGG
Sbjct: 65 DQILLNGNNITMLIPGG 81
>gi|323446815|gb|EGB02847.1| hypothetical protein AURANDRAFT_9792 [Aureococcus
anophagefferens]
Length = 95
Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 55/99 (55%), Positives = 69/99 (69%), Gaps = 24/99 (24%)
Query: 7 QLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNM--------------------V 46
+LLP EL+D+CIGS+IWVIMKGDKE+VGTL+GFD YVNM V
Sbjct: 1 RLLPLELVDKCIGSRIWVIMKGDKEVVGTLRGFDEYVNMAPRRRPPHPPTPRAERRGPQV 60
Query: 47 LEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPD 85
L+DVTEY A+ T+LDQILLNGNN++++VPGG P+
Sbjct: 61 LDDVTEYCDGAK----TQLDQILLNGNNVSMMVPGGDPE 95
>gi|46124883|ref|XP_386995.1| hypothetical protein FG06819.1 [Gibberella zeae PH-1]
Length = 89
Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/83 (65%), Positives = 63/83 (75%), Gaps = 9/83 (10%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDK------ELVGTLKGFDVYVNMVLEDVTEYEITAEG 59
SQLLP ELID+C+GS+IWVIMKGDK E GTL GFD YVNMVLEDVTE++ +
Sbjct: 3 SQLLPLELIDKCVGSRIWVIMKGDKGKMSLAEFSGTLVGFDDYVNMVLEDVTEFDYSG-- 60
Query: 60 RRITKLDQILLNGNNIAILVPGG 82
TKL +ILLNGNNI +L+PGG
Sbjct: 61 -NHTKLPKILLNGNNICMLIPGG 82
>gi|403411591|emb|CCL98291.1| predicted protein [Fibroporia radiculosa]
Length = 600
Score = 101 bits (251), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/69 (69%), Positives = 56/69 (81%), Gaps = 1/69 (1%)
Query: 18 IGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI 77
GS+IWVIMK ++E GTL GFD +VNMVLEDVTEYEIT +GR+ TKL Q LLNGNNI +
Sbjct: 530 FGSRIWVIMKSEREFTGTLLGFDDFVNMVLEDVTEYEITPQGRKATKLAQTLLNGNNICM 589
Query: 78 LVPGGS-PD 85
L+PG S PD
Sbjct: 590 LIPGSSGPD 598
>gi|326426796|gb|EGD72366.1| U6 snRNA-associated Sm-like protein LSm5 [Salpingoeca sp. ATCC
50818]
Length = 87
Score = 100 bits (250), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 51/77 (66%), Positives = 62/77 (80%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQ+LP ELID+CIGS+I V+MK DKELVG LKGFD +VNMVL DVTE+E EG +K
Sbjct: 2 SQVLPLELIDKCIGSRIHVVMKSDKELVGWLKGFDEFVNMVLTDVTEFENGPEGIVTSKR 61
Query: 66 DQILLNGNNIAILVPGG 82
+ILL+G +IA+LVPGG
Sbjct: 62 KEILLSGTHIAMLVPGG 78
>gi|326472938|gb|EGD96947.1| small nuclear ribonucleoprotein [Trichophyton tonsurans CBS
112818]
gi|326477364|gb|EGE01374.1| small nuclear ribonucleoprotein [Trichophyton equinum CBS 127.97]
Length = 83
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/71 (67%), Positives = 60/71 (84%), Gaps = 3/71 (4%)
Query: 12 ELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLN 71
ELID+C+GSKIW++MKGDKE GTL GFD YVNMVLEDVTE++ + G+ TKL +ILLN
Sbjct: 8 ELIDKCVGSKIWIVMKGDKEFCGTLLGFDDYVNMVLEDVTEFDYSG-GQ--TKLSKILLN 64
Query: 72 GNNIAILVPGG 82
GNN+ +L+PGG
Sbjct: 65 GNNVCMLIPGG 75
>gi|290999453|ref|XP_002682294.1| predicted protein [Naegleria gruberi]
gi|284095921|gb|EFC49550.1| predicted protein [Naegleria gruberi]
Length = 103
Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/80 (61%), Positives = 63/80 (78%), Gaps = 2/80 (2%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEG--RRITKLDQ 67
P ELID+CIGS I+V+MK DKELVGTL+GFD Y+NM+L++VTEY + +G R +KL
Sbjct: 15 PLELIDKCIGSSIFVLMKDDKELVGTLRGFDDYINMILDNVTEYSYSEDGSSRTESKLPS 74
Query: 68 ILLNGNNIAILVPGGSPDPE 87
I+LNGNN+AIL PG S P+
Sbjct: 75 IILNGNNVAILAPGLSEPPK 94
>gi|154275866|ref|XP_001538778.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150413851|gb|EDN09216.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 104
Score = 99.8 bits (247), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 63/97 (64%), Gaps = 23/97 (23%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDK--------------------ELVGTLKGFDVYVNM 45
SQLLP ELID+C+GSKIWV+MKGDK E GTL GFD YVNM
Sbjct: 3 SQLLPLELIDKCVGSKIWVVMKGDKGEEELGSDISPFLSSLTSNSEFSGTLLGFDDYVNM 62
Query: 46 VLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 82
VLEDVTE++ T TKL +ILLNGNNI +L+PGG
Sbjct: 63 VLEDVTEFDYTG---SQTKLSKILLNGNNICMLIPGG 96
>gi|353243444|emb|CCA74984.1| probable U6 snRNA-associated Sm-like protein LSm5 [Piriformospora
indica DSM 11827]
Length = 84
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 58/77 (75%), Gaps = 1/77 (1%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRI-TK 64
SQ+LP ELIDRCIGS+I VI+K D+E G L GFD +VNMVLEDVTE + G R+ TK
Sbjct: 3 SQILPLELIDRCIGSRITVILKNDREFTGVLLGFDDFVNMVLEDVTECQTLPSGERVKTK 62
Query: 65 LDQILLNGNNIAILVPG 81
L LLNGNNI IL+PG
Sbjct: 63 LQTTLLNGNNICILLPG 79
>gi|242775508|ref|XP_002478658.1| small nuclear ribonucleoprotein (LSM5), putative [Talaromyces
stipitatus ATCC 10500]
gi|218722277|gb|EED21695.1| small nuclear ribonucleoprotein (LSM5), putative [Talaromyces
stipitatus ATCC 10500]
Length = 105
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/74 (64%), Positives = 57/74 (77%), Gaps = 3/74 (4%)
Query: 9 LPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQI 68
L ELID+C+GSKIWV+MKGDKE GTL GFD YVNMVLEDVTE++ KL +I
Sbjct: 28 LKQELIDKCVGSKIWVVMKGDKEFSGTLLGFDDYVNMVLEDVTEFDYAGNQE---KLPKI 84
Query: 69 LLNGNNIAILVPGG 82
LLNGNN+ +L+PGG
Sbjct: 85 LLNGNNVCMLIPGG 98
>gi|71003313|ref|XP_756337.1| hypothetical protein UM00190.1 [Ustilago maydis 521]
gi|46096342|gb|EAK81575.1| hypothetical protein UM00190.1 [Ustilago maydis 521]
Length = 117
Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/89 (59%), Positives = 61/89 (68%), Gaps = 15/89 (16%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVN--------------MVLEDVTEY 53
+LP ELID+CIGS IWVIMK D+E GTL GFD YVN MVLEDVTEY
Sbjct: 22 ILPLELIDKCIGSSIWVIMKTDREFSGTLLGFDDYVNAMIDNHSSLAVHADMVLEDVTEY 81
Query: 54 EITAEG-RRITKLDQILLNGNNIAILVPG 81
E T +G ++ TKL Q LLNGNNI +L+PG
Sbjct: 82 ETTPDGKKKKTKLGQTLLNGNNICMLIPG 110
>gi|392577759|gb|EIW70888.1| hypothetical protein TREMEDRAFT_29158 [Tremella mesenterica DSM
1558]
Length = 85
Score = 98.2 bits (243), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 57/77 (74%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
S +LP EL+DRCIGS I VIMK ++E GTL GFD YVNMVL DV EY++T G T L
Sbjct: 3 STILPLELVDRCIGSPIHVIMKNEREFTGTLMGFDDYVNMVLRDVKEYQVTPGGIIETPL 62
Query: 66 DQILLNGNNIAILVPGG 82
Q LLNGNNI +L+PGG
Sbjct: 63 GQTLLNGNNIVMLIPGG 79
>gi|195222722|ref|NP_001124182.1| U6 snRNA-associated Sm-like protein LSm5 isoform b [Homo sapiens]
gi|213385305|ref|NP_001132971.1| U6 snRNA-associated Sm-like protein LSm5 isoform b [Homo sapiens]
gi|332242764|ref|XP_003270554.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 2
[Nomascus leucogenys]
gi|332242766|ref|XP_003270555.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 3
[Nomascus leucogenys]
gi|332242768|ref|XP_003270556.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 4
[Nomascus leucogenys]
gi|332864463|ref|XP_003318296.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 1
[Pan troglodytes]
gi|332864465|ref|XP_003318297.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 isoform 2
[Pan troglodytes]
gi|402863786|ref|XP_003896180.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
2 [Papio anubis]
gi|410058757|ref|XP_003951029.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Pan
troglodytes]
gi|410058759|ref|XP_003951030.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Pan
troglodytes]
gi|426355883|ref|XP_004045333.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
3 [Gorilla gorilla gorilla]
gi|426355885|ref|XP_004045334.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
4 [Gorilla gorilla gorilla]
gi|426355887|ref|XP_004045335.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
5 [Gorilla gorilla gorilla]
gi|426355889|ref|XP_004045336.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like isoform
6 [Gorilla gorilla gorilla]
gi|441650806|ref|XP_004091023.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5 [Nomascus
leucogenys]
gi|344235531|gb|EGV91634.1| U6 snRNA-associated Sm-like protein LSm5 [Cricetulus griseus]
Length = 62
Score = 97.8 bits (242), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 48/58 (82%), Positives = 52/58 (89%)
Query: 26 MKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGS 83
MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRITKLDQILLNGNNI +LVPGG
Sbjct: 1 MKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGGE 58
>gi|66363282|ref|XP_628607.1| U6 snRNA-associated Sm-like protein LSm5. SM domain
[Cryptosporidium parvum Iowa II]
gi|90109709|pdb|2FWK|A Chain A, Crystal Structure Of Cryptosporidium Parvum U6 Snrna-
Associated Sm-Like Protein Lsm5
gi|90109710|pdb|2FWK|B Chain B, Crystal Structure Of Cryptosporidium Parvum U6 Snrna-
Associated Sm-Like Protein Lsm5
gi|321159967|pdb|3PGG|A Chain A, Crystal Structure Of Cryptosporidium Parvum U6
Snrna-Associated Sm- Like Protein Lsm5
gi|321159968|pdb|3PGG|B Chain B, Crystal Structure Of Cryptosporidium Parvum U6
Snrna-Associated Sm- Like Protein Lsm5
gi|46229827|gb|EAK90645.1| U6 snRNA-associated Sm-like protein LSm5. SM domain
[Cryptosporidium parvum Iowa II]
Length = 121
Score = 97.8 bits (242), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 48/90 (53%), Positives = 63/90 (70%), Gaps = 12/90 (13%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT---- 63
+LP LID+CIG++I+V+MKGDKE G L+GFD YVNMVL+DV EY A+ I+
Sbjct: 27 ILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNK 86
Query: 64 --------KLDQILLNGNNIAILVPGGSPD 85
+L+ ILL+GNN+A+LVPGG PD
Sbjct: 87 KLKRVMVNRLETILLSGNNVAMLVPGGDPD 116
>gi|134105981|ref|XP_778001.1| hypothetical protein CNBA0080 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50260704|gb|EAL23354.1| hypothetical protein CNBA0080 [Cryptococcus neoformans var.
neoformans B-3501A]
Length = 216
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 56/73 (76%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
S +LP EL+DRCIGS IWV+MK ++E GTL GFD YVNMVL+DV EYE+TA G T L
Sbjct: 3 STILPLELVDRCIGSPIWVLMKNEREFTGTLMGFDDYVNMVLKDVKEYEVTASGITETDL 62
Query: 66 DQILLNGNNIAIL 78
LLNGNNIA++
Sbjct: 63 GDTLLNGNNIAMV 75
>gi|321250537|ref|XP_003191841.1| hypothetical protein CGB_B0090W [Cryptococcus gattii WM276]
gi|317458309|gb|ADV20054.1| Conserved hypothetical protein [Cryptococcus gattii WM276]
Length = 122
Score = 97.4 bits (241), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 55/73 (75%)
Query: 5 PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK 64
S +LP EL+DRCIGS IWV+MK ++E GTL GFD YVNMVL+DV EYE+TA G T
Sbjct: 2 ASTILPLELVDRCIGSPIWVLMKNEREFTGTLMGFDDYVNMVLKDVKEYEVTASGITETD 61
Query: 65 LDQILLNGNNIAI 77
L LLNGNNIA+
Sbjct: 62 LGDTLLNGNNIAM 74
>gi|328865149|gb|EGG13535.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 98
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 60/78 (76%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
+Q+LP ELI++CIGS+IW+ MK +KE VGTL GFD YVN+ L+DV EYE T EG + KL
Sbjct: 16 TQILPLELIEKCIGSRIWICMKNEKEFVGTLLGFDTYVNIFLKDVIEYENTPEGTKQIKL 75
Query: 66 DQILLNGNNIAILVPGGS 83
+ ILLNGN++ +++ S
Sbjct: 76 EYILLNGNHVCLVIYRSS 93
>gi|301107352|ref|XP_002902758.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262097876|gb|EEY55928.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 62
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/59 (76%), Positives = 52/59 (88%)
Query: 26 MKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSP 84
MKGDKE +GTL+GFD YVNMVL+DVTEYEIT EG+R KLDQ+LLNGNN+ +LVPGG P
Sbjct: 1 MKGDKEFLGTLRGFDDYVNMVLDDVTEYEITPEGKREVKLDQVLLNGNNVCLLVPGGFP 59
>gi|58258057|ref|XP_566441.1| hypothetical protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|57222578|gb|AAW40622.1| conserved hypothetical protein [Cryptococcus neoformans var.
neoformans JEC21]
Length = 216
Score = 97.1 bits (240), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/73 (64%), Positives = 56/73 (76%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
S +LP EL+DRCIGS IWV+MK ++E GTL GFD YVNMVL+DV EYE+TA G T L
Sbjct: 3 STILPLELVDRCIGSPIWVLMKNEREFTGTLMGFDDYVNMVLKDVKEYEVTASGITETDL 62
Query: 66 DQILLNGNNIAIL 78
LLNGNNIA++
Sbjct: 63 GDTLLNGNNIAMV 75
>gi|440632020|gb|ELR01939.1| hypothetical protein GMDG_05112 [Geomyces destructans 20631-21]
Length = 227
Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 53/66 (80%), Gaps = 3/66 (4%)
Query: 12 ELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLN 71
ELIDRC+GSKIWV+MK DKE GTL GFD YVNMVLEDVTE++ T TK+++ILLN
Sbjct: 140 ELIDRCVGSKIWVVMKTDKEFTGTLTGFDDYVNMVLEDVTEFDYTGA---TTKMEKILLN 196
Query: 72 GNNIAI 77
GNNI +
Sbjct: 197 GNNICM 202
>gi|67601363|ref|XP_666392.1| U6 snRNA associated SM-like protein LSM5 [Cryptosporidium hominis
TU502]
gi|54657379|gb|EAL36161.1| U6 snRNA associated SM-like protein LSM5 [Cryptosporidium hominis]
Length = 115
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/90 (52%), Positives = 64/90 (71%), Gaps = 12/90 (13%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE------GRR 61
+LP LID+CIG++I+V+MKGDKE G L+GFD YVNMVL+DV EY A+ G +
Sbjct: 21 ILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDMSGGNK 80
Query: 62 ------ITKLDQILLNGNNIAILVPGGSPD 85
+ +L+ ILL+GNN+A+LVPGG P+
Sbjct: 81 KLKRVMVNRLETILLSGNNVAMLVPGGDPN 110
>gi|209879413|ref|XP_002141147.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209556753|gb|EEA06798.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 112
Score = 95.5 bits (236), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/88 (53%), Positives = 65/88 (73%), Gaps = 11/88 (12%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEIT------AEG 59
S LLP LID+CIGS+I++I++GD+E+ GTL+GFD YVNMVL++V EY T A
Sbjct: 18 STLLPLALIDKCIGSRIYIILRGDREISGTLRGFDEYVNMVLDEVEEYGYTIVMNESASN 77
Query: 60 RR-----ITKLDQILLNGNNIAILVPGG 82
++ + +LD ILL+GNNIA+L+PGG
Sbjct: 78 KKLKRVLVNRLDTILLSGNNIALLIPGG 105
>gi|396458116|ref|XP_003833671.1| similar to U6 snRNA-associated Sm-like protein LSm5
[Leptosphaeria maculans JN3]
gi|312210219|emb|CBX90306.1| similar to U6 snRNA-associated Sm-like protein LSm5
[Leptosphaeria maculans JN3]
Length = 84
Score = 94.7 bits (234), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 50/76 (65%), Positives = 58/76 (76%), Gaps = 3/76 (3%)
Query: 7 QLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLD 66
LLP ELID+C+GS+IWVIM G KE G L GFD YVNMVLEDVTE + +EG KL
Sbjct: 5 NLLPLELIDKCVGSQIWVIMNGGKEFTGKLVGFDDYVNMVLEDVTEID-ASEGN--VKLP 61
Query: 67 QILLNGNNIAILVPGG 82
+ILLNGNNI ++VPGG
Sbjct: 62 KILLNGNNICMMVPGG 77
>gi|213403610|ref|XP_002172577.1| U6 snRNP-associated protein Lsm5 [Schizosaccharomyces japonicus
yFS275]
gi|212000624|gb|EEB06284.1| U6 snRNP-associated protein Lsm5 [Schizosaccharomyces japonicus
yFS275]
Length = 79
Score = 94.4 bits (233), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 57/77 (74%), Gaps = 2/77 (2%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQ 67
+LP ELID+CIGS +WVIMKG+KE VGTL GFD YVNMVL+DVTE + K +
Sbjct: 5 ILPLELIDKCIGSNLWVIMKGEKEFVGTLVGFDDYVNMVLKDVTEIDTITNVTEQHK--E 62
Query: 68 ILLNGNNIAILVPGGSP 84
ILLNGN I +L+PGG P
Sbjct: 63 ILLNGNGICMLIPGGKP 79
>gi|169601618|ref|XP_001794231.1| hypothetical protein SNOG_03677 [Phaeosphaeria nodorum SN15]
gi|160705976|gb|EAT88882.2| hypothetical protein SNOG_03677 [Phaeosphaeria nodorum SN15]
Length = 86
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/77 (64%), Positives = 58/77 (75%), Gaps = 3/77 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
LLP ELID+C+GS+IWVIM G KE G L GFD YVNMVLE+VTE + AEG KL
Sbjct: 4 ENLLPLELIDKCVGSQIWVIMNGGKEFTGKLVGFDDYVNMVLEEVTEID-PAEGN--VKL 60
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGNNI ++VPGG
Sbjct: 61 PKILLNGNNICMMVPGG 77
>gi|124809480|ref|XP_001348585.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
gi|23497482|gb|AAN37024.1| small nuclear ribonucleoprotein, putative [Plasmodium falciparum
3D7]
Length = 101
Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 61/77 (79%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQ 67
LP L+D+CIGSKIW++MKGDKE+VG L GFD YVNMVLEDVTEY +++ K+ +
Sbjct: 10 FLPLALMDKCIGSKIWIMMKGDKEIVGKLVGFDEYVNMVLEDVTEYTYANNVKKVNKIKK 69
Query: 68 ILLNGNNIAILVPGGSP 84
+LLNG NI I+VPGG+P
Sbjct: 70 LLLNGLNITIMVPGGTP 86
>gi|340506197|gb|EGR32392.1| lsm5 protein, putative [Ichthyophthirius multifiliis]
Length = 83
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 58/77 (75%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQ 67
+LP ELID+CIG KIW+++K +KE+VGTL+GFD + NMVL++ EY+ + T +D
Sbjct: 6 ILPLELIDKCIGHKIWILLKNNKEVVGTLRGFDDFFNMVLDEAKEYQFQNGIKNQTNIDS 65
Query: 68 ILLNGNNIAILVPGGSP 84
ILLNG +I ++VPGG P
Sbjct: 66 ILLNGAHITLIVPGGEP 82
>gi|195374175|ref|XP_002046059.1| GM26694 [Drosophila sechellia]
gi|194123247|gb|EDW45290.1| GM26694 [Drosophila sechellia]
Length = 61
Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/58 (77%), Positives = 51/58 (87%)
Query: 26 MKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGS 83
MK DKE+VGTL GFD +VNM+L+DVTEYE T +GRRITKLDQILLNGNNI +LVPGG
Sbjct: 1 MKNDKEMVGTLLGFDDFVNMLLDDVTEYENTPDGRRITKLDQILLNGNNITMLVPGGE 58
>gi|195655179|gb|ACG47057.1| SAD1 [Zea mays]
Length = 58
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 44/46 (95%), Positives = 45/46 (97%)
Query: 3 HNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLE 48
+NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTL GFDVYVNMVLE
Sbjct: 4 NNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLE 49
>gi|156086956|ref|XP_001610885.1| snRNP Sm-like protein [Babesia bovis T2Bo]
gi|154798138|gb|EDO07317.1| snRNP Sm-like protein, putative [Babesia bovis]
Length = 87
Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 40/73 (54%), Positives = 56/73 (76%)
Query: 9 LPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQI 68
LP L+D+C+G+K+W+IMKG+KE+ G L+GFD Y+N+VL+DVTEY G T+L
Sbjct: 11 LPLALVDKCLGTKVWIIMKGEKEITGVLRGFDDYMNVVLDDVTEYTFKPTGVETTELKDA 70
Query: 69 LLNGNNIAILVPG 81
L+NG NIA++VPG
Sbjct: 71 LVNGTNIAMIVPG 83
>gi|451848655|gb|EMD61960.1| hypothetical protein COCSADRAFT_147219 [Cochliobolus sativus
ND90Pr]
gi|451998469|gb|EMD90933.1| hypothetical protein COCHEDRAFT_1021722 [Cochliobolus
heterostrophus C5]
Length = 86
Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 49/77 (63%), Positives = 58/77 (75%), Gaps = 3/77 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
LLP ELID+C+GS+IWVIM G KE G L GFD YVNMVLE+VTE + AEG +L
Sbjct: 4 ENLLPLELIDKCVGSQIWVIMNGGKEFTGKLVGFDDYVNMVLENVTEID-PAEGN--VQL 60
Query: 66 DQILLNGNNIAILVPGG 82
+ILLNGNNI ++VPGG
Sbjct: 61 PKILLNGNNICMMVPGG 77
>gi|339260352|ref|XP_003368450.1| putative LSM domain protein [Trichinella spiralis]
gi|316964864|gb|EFV49782.1| putative LSM domain protein [Trichinella spiralis]
Length = 62
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 44/58 (75%), Positives = 51/58 (87%)
Query: 26 MKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGS 83
MKG+KELVGTL GFD YVN+VLEDV EYE T EG+RIT+LDQILLNG +IA+L+PGG
Sbjct: 1 MKGNKELVGTLLGFDDYVNIVLEDVIEYETTTEGKRITRLDQILLNGTHIAMLIPGGE 58
>gi|325187598|emb|CCA22134.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 67
Score = 91.3 bits (225), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 40/60 (66%), Positives = 51/60 (85%)
Query: 26 MKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPD 85
M+GDKE VGTL+GFD YVNMVL+DVTE+E+T G+R LDQ+LLNGNN+ +L+PGG P+
Sbjct: 1 MQGDKEFVGTLRGFDDYVNMVLDDVTEFELTPSGKRQIALDQVLLNGNNVCMLIPGGMPE 60
>gi|156100461|ref|XP_001615958.1| U6 snRNA-associated Sm-like protein LSm5 [Plasmodium vivax Sal-1]
gi|221059589|ref|XP_002260440.1| small nuclear ribonuclear protein [Plasmodium knowlesi strain H]
gi|148804832|gb|EDL46231.1| U6 snRNA-associated Sm-like protein LSm5, putative [Plasmodium
vivax]
gi|193810513|emb|CAQ41707.1| small nuclear ribonuclear protein, putative [Plasmodium knowlesi
strain H]
gi|389585422|dbj|GAB68153.1| U6 snRNA-associated Sm-like protein LSm5 [Plasmodium cynomolgi
strain B]
Length = 101
Score = 90.9 bits (224), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 60/77 (77%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQ 67
LP L+D+CIGSKIWV++KGDKE+VG L GFD YVNMVLEDVTEY +++ K+ +
Sbjct: 10 FLPLALMDKCIGSKIWVMLKGDKEIVGKLVGFDEYVNMVLEDVTEYTYVNNVKKVNKIKK 69
Query: 68 ILLNGNNIAILVPGGSP 84
+LLNG NI I+VPGG P
Sbjct: 70 LLLNGLNITIMVPGGVP 86
>gi|19113165|ref|NP_596373.1| U6 snRNP-associated protein Lsm5 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74626712|sp|O42978.2|LSM5_SCHPO RecName: Full=U6 snRNA-associated Sm-like protein LSm5
gi|4539252|emb|CAA16849.2| U6 snRNP-associated protein Lsm5 (predicted) [Schizosaccharomyces
pombe]
Length = 80
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/78 (57%), Positives = 59/78 (75%), Gaps = 2/78 (2%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQ 67
+LP ELID+CIGS +WVIMK ++E GTL GFD YVN+VL+DVTEY+ T G K +
Sbjct: 5 ILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYD-TVTGVT-EKHSE 62
Query: 68 ILLNGNNIAILVPGGSPD 85
+LLNGN + +L+PGG P+
Sbjct: 63 MLLNGNGMCMLIPGGKPE 80
>gi|354459632|pdb|3SWN|A Chain A, Structure Of The Lsm657 Complex: An Assembly
Intermediate Of The Lsm1 7 And Lsm2 8 Rings
gi|354459635|pdb|3SWN|D Chain D, Structure Of The Lsm657 Complex: An Assembly
Intermediate Of The Lsm1 7 And Lsm2 8 Rings
gi|354459638|pdb|3SWN|P Chain P, Structure Of The Lsm657 Complex: An Assembly
Intermediate Of The Lsm1 7 And Lsm2 8 Rings
gi|354459641|pdb|3SWN|S Chain S, Structure Of The Lsm657 Complex: An Assembly
Intermediate Of The Lsm1 7 And Lsm2 8 Rings
Length = 82
Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/78 (57%), Positives = 59/78 (75%), Gaps = 2/78 (2%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQ 67
+LP ELID+CIGS +WVIMK ++E GTL GFD YVN+VL+DVTEY+ T G K +
Sbjct: 7 ILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYD-TVTGVT-EKHSE 64
Query: 68 ILLNGNNIAILVPGGSPD 85
+LLNGN + +L+PGG P+
Sbjct: 65 MLLNGNGMCMLIPGGKPE 82
>gi|399218089|emb|CCF74976.1| unnamed protein product [Babesia microti strain RI]
Length = 87
Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 56/77 (72%), Gaps = 1/77 (1%)
Query: 9 LPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQI 68
LP L+D+CIG+++W+IMK DKEL G L GFD Y+NM +DV EY + +G + +D+
Sbjct: 11 LPLALVDKCIGNRMWIIMKNDKELDGILCGFDDYMNMASKDVKEYTYSPQGHTVENIDKC 70
Query: 69 LLNGNNIAILVP-GGSP 84
LLNGNNI +L+P G SP
Sbjct: 71 LLNGNNIVMLIPRGKSP 87
>gi|219113037|ref|XP_002186102.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209582952|gb|ACI65572.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 94
Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/85 (54%), Positives = 65/85 (76%), Gaps = 5/85 (5%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR-RITK 64
+++LP ELID+ IGSKIWV+M+G KE+VGTL+GFD YVN+VL++ E+ + ++ +
Sbjct: 3 TRILPLELIDKAIGSKIWVLMRGTKEVVGTLQGFDDYVNLVLDNAVEFSPDPHDKSKVVR 62
Query: 65 LD---QILLNGNNIAILVPGGS-PD 85
+ +ILLNGN IA+LVPGGS PD
Sbjct: 63 NELSCEILLNGNQIALLVPGGSGPD 87
>gi|330934258|ref|XP_003304477.1| hypothetical protein PTT_17081 [Pyrenophora teres f. teres 0-1]
gi|311318880|gb|EFQ87428.1| hypothetical protein PTT_17081 [Pyrenophora teres f. teres 0-1]
Length = 94
Score = 86.7 bits (213), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/84 (59%), Positives = 58/84 (69%), Gaps = 11/84 (13%)
Query: 7 QLLPSELIDRCIGSKIWVIMKGDK--------ELVGTLKGFDVYVNMVLEDVTEYEITAE 58
LLP ELID+C+GS+IWVIM G K + G L GFD YVNMVLEDVTE + AE
Sbjct: 5 NLLPLELIDKCVGSQIWVIMNGGKGRLICSHSKFTGKLVGFDDYVNMVLEDVTEID-PAE 63
Query: 59 GRRITKLDQILLNGNNIAILVPGG 82
G KL +ILLNGNNI ++VPGG
Sbjct: 64 GN--VKLPKILLNGNNICMMVPGG 85
>gi|390981167|pdb|4EMK|A Chain A, Crystal Structure Of Splsm567
Length = 94
Score = 84.7 bits (208), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 55/78 (70%), Gaps = 2/78 (2%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQ 67
+LP ELID+CIGS +WVI K ++E GTL GFD YVN+VL+DVTEY+ T G K +
Sbjct: 19 ILPLELIDKCIGSNLWVIXKSEREFAGTLVGFDDYVNIVLKDVTEYD-TVTGVT-EKHSE 76
Query: 68 ILLNGNNIAILVPGGSPD 85
LLNGN L+PGG P+
Sbjct: 77 XLLNGNGXCXLIPGGKPE 94
>gi|195588134|ref|XP_002083813.1| GD13932 [Drosophila simulans]
gi|194195822|gb|EDX09398.1| GD13932 [Drosophila simulans]
Length = 55
Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 40/52 (76%), Positives = 46/52 (88%)
Query: 32 LVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGS 83
+VGTL GFD +VNM+L+DVTEYE T +GRRITKLDQILLNGNNI +LVPGG
Sbjct: 1 MVGTLLGFDDFVNMLLDDVTEYENTPDGRRITKLDQILLNGNNITMLVPGGE 52
>gi|50546793|ref|XP_500866.1| YALI0B14058p [Yarrowia lipolytica]
gi|49646732|emb|CAG83117.1| YALI0B14058p [Yarrowia lipolytica CLIB122]
Length = 85
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 56/77 (72%), Gaps = 2/77 (2%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQ+LP EL+D+CIGSKI V++K E GTL GFD +VNMVLEDVTE T G+ T
Sbjct: 10 SQILPLELVDKCIGSKILVLVKSKVEFTGTLVGFDDFVNMVLEDVTEVN-TKTGKE-TNH 67
Query: 66 DQILLNGNNIAILVPGG 82
++LL+G +I +LVPGG
Sbjct: 68 SKLLLSGKSIYMLVPGG 84
>gi|327292284|ref|XP_003230850.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm5-like, partial
[Anolis carolinensis]
Length = 56
Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/49 (75%), Positives = 44/49 (89%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE
Sbjct: 8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTE 56
>gi|397573274|gb|EJK48624.1| hypothetical protein THAOC_32562 [Thalassiosira oceanica]
gi|397614325|gb|EJK62729.1| hypothetical protein THAOC_16646 [Thalassiosira oceanica]
Length = 95
Score = 82.0 bits (201), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/80 (50%), Positives = 57/80 (71%), Gaps = 4/80 (5%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRR--IT 63
+++LP ELID+ IGS IW++M+G EL G L+GFD YVN+VL+D EY + +T
Sbjct: 3 NRILPLELIDKAIGSPIWILMRGQTELTGILRGFDDYVNLVLDDAVEYSPDPRNKSEIVT 62
Query: 64 KL--DQILLNGNNIAILVPG 81
K +ILLNGN++A++VPG
Sbjct: 63 KRLETEILLNGNHVAVMVPG 82
>gi|223993353|ref|XP_002286360.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220977675|gb|EED96001.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 94
Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 40/81 (49%), Positives = 56/81 (69%), Gaps = 4/81 (4%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
+++LP ELID+ IGS IW++M+G EL G L+GFD YVN+VL+D EY + +
Sbjct: 3 TRILPLELIDKAIGSPIWILMRGQTELTGILRGFDDYVNLVLDDAVEYSPDPRDKSVVVK 62
Query: 66 D----QILLNGNNIAILVPGG 82
+ILLNGN++A+LVPGG
Sbjct: 63 KVLKAEILLNGNHVAVLVPGG 83
>gi|170593551|ref|XP_001901527.1| U6 snRNA-associated Sm-like protein LSm5 [Brugia malayi]
gi|158590471|gb|EDP29086.1| U6 snRNA-associated Sm-like protein LSm5, putative [Brugia
malayi]
Length = 65
Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 39/55 (70%), Positives = 46/55 (83%)
Query: 29 DKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGS 83
+ E+VGTL GFD YVNMVLEDV EYE T +G+R+TKLD ILLNGN+I +LVPGG
Sbjct: 7 EDEIVGTLTGFDDYVNMVLEDVVEYENTVDGKRVTKLDTILLNGNHITMLVPGGE 61
>gi|449018389|dbj|BAM81791.1| U6 snRNA-associated Sm-like protein LSm5 [Cyanidioschyzon merolae
strain 10D]
Length = 102
Score = 80.9 bits (198), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 54/84 (64%), Gaps = 1/84 (1%)
Query: 2 AHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRR 61
A+ PS L P EL+D +G+++W+I++G +E G L+GFD YVN+ LEDV EY + EG
Sbjct: 5 ANQPS-LYPLELVDAAVGTRVWIILRGAREFCGILRGFDEYVNLFLEDVDEYTYSEEGIE 63
Query: 62 ITKLDQILLNGNNIAILVPGGSPD 85
+ Q+ LNG+ I +L + D
Sbjct: 64 KQHIAQMFLNGSQICVLAAAPTLD 87
>gi|45201226|ref|NP_986796.1| AGR130Wp [Ashbya gossypii ATCC 10895]
gi|44986080|gb|AAS54620.1| AGR130Wp [Ashbya gossypii ATCC 10895]
gi|374110045|gb|AEY98950.1| FAGR130Wp [Ashbya gossypii FDAG1]
Length = 80
Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/79 (49%), Positives = 56/79 (70%), Gaps = 3/79 (3%)
Query: 7 QLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLD 66
++LP E+IDR I IWV++ ++E GTL GFD +VN+V+EDV EY+ A R + +
Sbjct: 2 EVLPLEIIDRAINQPIWVLLTSNREFTGTLVGFDDFVNVVIEDVVEYD--APDRAVKRHP 59
Query: 67 -QILLNGNNIAILVPGGSP 84
++LL+GNNI +LVPGG P
Sbjct: 60 GRMLLSGNNITVLVPGGKP 78
>gi|363753790|ref|XP_003647111.1| hypothetical protein Ecym_5554 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890747|gb|AET40294.1| hypothetical protein Ecym_5554 [Eremothecium cymbalariae
DBVPG#7215]
Length = 82
Score = 79.0 bits (193), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 57/80 (71%), Gaps = 3/80 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYE-ITAEGRRITK 64
S++LP E+ID+ I IW+++ ++E GTL GFD +VN+V+EDV EYE + E +R
Sbjct: 4 SEILPLEIIDKTINQPIWILLTSNREFTGTLVGFDDFVNVVIEDVIEYEGVDKEVKR--H 61
Query: 65 LDQILLNGNNIAILVPGGSP 84
++LL+GNNI +LVPGG P
Sbjct: 62 HGKMLLSGNNITMLVPGGKP 81
>gi|385305618|gb|EIF49579.1| small nuclear ribonucleoprotein [Dekkera bruxellensis AWRI1499]
Length = 93
Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 42/80 (52%), Positives = 57/80 (71%), Gaps = 3/80 (3%)
Query: 7 QLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLD 66
Q+LP ELID+ IG+KIW IM E VGTL+GFD +VN+VL DVTEY+++ +
Sbjct: 15 QILPLELIDKSIGTKIWAIMSDFHEFVGTLEGFDDFVNIVLSDVTEYDVSKKVVSKKS-- 72
Query: 67 QILLNGNNIAILVPGGS-PD 85
++LL+ N+A+LVPGG PD
Sbjct: 73 KMLLSSRNLAMLVPGGDGPD 92
>gi|444315021|ref|XP_004178168.1| hypothetical protein TBLA_0A08590 [Tetrapisispora blattae CBS
6284]
gi|387511207|emb|CCH58649.1| hypothetical protein TBLA_0A08590 [Tetrapisispora blattae CBS
6284]
Length = 97
Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 55/77 (71%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQ 67
+LP E+ID+ I ++W++++ +E +G L G D +VN+++EDVTEY E R + +
Sbjct: 21 ILPLEIIDKAINQQVWILLQSQREFIGKLIGVDDFVNVIIEDVTEYIEDGESRVMEHHGR 80
Query: 68 ILLNGNNIAILVPGGSP 84
+LL+GN+IAI++PGG P
Sbjct: 81 MLLSGNSIAIIIPGGRP 97
>gi|403333765|gb|EJY66003.1| U6 small nuclear ribonucleoprotein E, putative [Oxytricha
trifallax]
Length = 81
Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 55/72 (76%), Gaps = 3/72 (4%)
Query: 13 LIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYE-ITAEGRR--ITKLDQIL 69
++D+C G ++W+IM+ DKE GTL+GFD Y N++L+DV EY+ A G+R + +++ +L
Sbjct: 1 MVDKCQGQRVWIIMQNDKEFSGTLRGFDGYFNLILDDVKEYQDAGAGGKRLLVNQVESML 60
Query: 70 LNGNNIAILVPG 81
LNG++I +++PG
Sbjct: 61 LNGSHICMMIPG 72
>gi|145489729|ref|XP_001430866.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124397967|emb|CAK63468.1| unnamed protein product [Paramecium tetraurelia]
Length = 77
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 54/77 (70%), Gaps = 4/77 (5%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
+ +LP L+D+ I S++W++MK D+E GTL+GFD + NMVLE+V E +G + KL
Sbjct: 2 TTILPLGLLDKAISSRVWILMKDDREFEGTLRGFDDFFNMVLENVIEL----DGGKKNKL 57
Query: 66 DQILLNGNNIAILVPGG 82
+ ILLNG I ++VPGG
Sbjct: 58 ESILLNGTQICLIVPGG 74
>gi|255719860|ref|XP_002556210.1| KLTH0H07612p [Lachancea thermotolerans]
gi|238942176|emb|CAR30348.1| KLTH0H07612p [Lachancea thermotolerans CBS 6340]
Length = 81
Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 56/77 (72%), Gaps = 2/77 (2%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
+++LP E+ID+ +G +WV++ +E GTL G+D +VN+VLEDV EY+ E +R
Sbjct: 4 AEVLPLEIIDKTVGQPVWVMLTSHREFAGTLVGYDDFVNVVLEDVIEYDHDQEIKR--HA 61
Query: 66 DQILLNGNNIAILVPGG 82
++LL+GNNI++LVPGG
Sbjct: 62 GKMLLSGNNISMLVPGG 78
>gi|323305294|gb|EGA59041.1| Lsm5p [Saccharomyces cerevisiae FostersB]
Length = 116
Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 58/85 (68%), Gaps = 5/85 (5%)
Query: 7 QLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE-----GRR 61
++LP E+ID+ I K+ ++++ ++E GTL GFD +VN++LED E+ I E G+
Sbjct: 5 EILPLEVIDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNGKV 64
Query: 62 ITKLDQILLNGNNIAILVPGGSPDP 86
+ ++LL+GNNIAILVPGG DP
Sbjct: 65 MQHHGRMLLSGNNIAILVPGGKKDP 89
>gi|50425663|ref|XP_461428.1| DEHA2F25036p [Debaryomyces hansenii CBS767]
gi|49657097|emb|CAG89843.1| DEHA2F25036p [Debaryomyces hansenii CBS767]
Length = 93
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/75 (52%), Positives = 54/75 (72%), Gaps = 2/75 (2%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
S +LP E+ID+ IG KI V+M DKE GTL GFD YVNMVLE+V E++ EG + +
Sbjct: 19 STILPLEIIDKSIGHKIQVLMTNDKEFKGTLIGFDDYVNMVLENVEEFD--NEGPKGKVI 76
Query: 66 DQILLNGNNIAILVP 80
++LLNG+ +A+L+P
Sbjct: 77 KKMLLNGSQVAMLIP 91
>gi|50308811|ref|XP_454410.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49643545|emb|CAG99497.1| KLLA0E10209p [Kluyveromyces lactis]
Length = 84
Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/79 (46%), Positives = 55/79 (69%), Gaps = 2/79 (2%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
S++LP E+ID+ IG ++ +++K +E GTL GFD YVN+V+E+ EY E +R
Sbjct: 5 SEILPLEVIDKTIGQEVTILLKDYREFFGTLVGFDDYVNVVIENAVEYLEDQEIKRFQ-- 62
Query: 66 DQILLNGNNIAILVPGGSP 84
++LL GNNIA+L+PGG P
Sbjct: 63 GKMLLTGNNIAMLIPGGKP 81
>gi|430814458|emb|CCJ28305.1| unnamed protein product [Pneumocystis jirovecii]
Length = 50
Score = 74.3 bits (181), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 33/49 (67%), Positives = 40/49 (81%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
+ S LLP EL+D+C+GS+IWV+MKGD E G L GFD YVNMVL+DVTE
Sbjct: 2 STSTLLPLELVDKCVGSRIWVVMKGDTEFSGILLGFDDYVNMVLQDVTE 50
>gi|323309313|gb|EGA62531.1| Lsm5p [Saccharomyces cerevisiae FostersO]
Length = 116
Score = 74.3 bits (181), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 58/85 (68%), Gaps = 5/85 (5%)
Query: 7 QLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR-RITKL 65
++LP E+ID+ I K+ ++++ ++E GTL GFD +VN++LED E+ I E R K+
Sbjct: 5 EILPLEVIDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEXESRNEKV 64
Query: 66 DQ----ILLNGNNIAILVPGGSPDP 86
Q +LL+GNNIAILVPGG DP
Sbjct: 65 MQHHGRMLLSGNNIAILVPGGKKDP 89
>gi|226290811|gb|EEH46274.1| conserved hypothetical protein [Paracoccidioides brasiliensis
Pb18]
Length = 97
Score = 73.9 bits (180), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 49/71 (69%), Gaps = 16/71 (22%)
Query: 12 ELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLN 71
ELID+C+GSKIWV+MKGDK+ MVLEDVTE++ T TKL +ILLN
Sbjct: 35 ELIDKCVGSKIWVVMKGDKD-------------MVLEDVTEFDYTGAQ---TKLPKILLN 78
Query: 72 GNNIAILVPGG 82
GNN+ +L+PGG
Sbjct: 79 GNNVCMLIPGG 89
>gi|443921905|gb|ELU41433.1| importin alpha subunit [Rhizoctonia solani AG-1 IA]
Length = 1187
Score = 73.6 bits (179), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 46/73 (63%), Gaps = 16/73 (21%)
Query: 12 ELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLN 71
EL+DRCIG++IWVIMK NMVL+DVTEYEIT +G + TKL Q LLN
Sbjct: 1103 ELVDRCIGTRIWVIMK----------------NMVLDDVTEYEITPQGIKKTKLAQTLLN 1146
Query: 72 GNNIAILVPGGSP 84
GNNI + G P
Sbjct: 1147 GNNICMQRARGQP 1159
>gi|68482073|ref|XP_715054.1| potential RNA processing complex subunit Lsm5 [Candida albicans
SC5314]
gi|46436659|gb|EAK96018.1| potential RNA processing complex subunit Lsm5 [Candida albicans
SC5314]
Length = 119
Score = 73.6 bits (179), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 52/76 (68%), Gaps = 6/76 (7%)
Query: 5 PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK 64
P +LP E+IDR +G ++ V+M GDKE G L GFD YVNMVLEDVTE + A
Sbjct: 49 PQTVLPLEVIDRSVGKRVRVLMTGDKEFNGKLIGFDDYVNMVLEDVTEVDGGA------P 102
Query: 65 LDQILLNGNNIAILVP 80
+ ++LLNG +IA++VP
Sbjct: 103 IKKMLLNGGHIAMIVP 118
>gi|403216723|emb|CCK71219.1| hypothetical protein KNAG_0G01610 [Kazachstania naganishii CBS
8797]
Length = 86
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 56/80 (70%), Gaps = 2/80 (2%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEIT-AEGRRITKLD 66
+LP E+ID+ I +W+I++ ++E GTL GFD +VN+++ED E+ +T + +I +
Sbjct: 6 ILPLEVIDKTISQPVWIILQSNREFTGTLVGFDDFVNVIIEDAVEWTVTDGKSEKIMEHH 65
Query: 67 -QILLNGNNIAILVPGGSPD 85
++LL+GNNI +LVPGG D
Sbjct: 66 GRMLLSGNNIVMLVPGGKKD 85
>gi|365987129|ref|XP_003670396.1| hypothetical protein NDAI_0E03360 [Naumovozyma dairenensis CBS
421]
gi|343769166|emb|CCD25153.1| hypothetical protein NDAI_0E03360 [Naumovozyma dairenensis CBS
421]
Length = 88
Score = 72.8 bits (177), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 54/81 (66%), Gaps = 3/81 (3%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRR---ITK 64
+LP E+ID+ I +W+I++ +E GTL GFD +VN+++ED E+ + EG +T
Sbjct: 7 VLPLEVIDKTINQPVWIILQSQREFTGTLIGFDDFVNVIIEDAVEWVLNEEGEDEMIMTH 66
Query: 65 LDQILLNGNNIAILVPGGSPD 85
++LL+GN IA+LVPGG +
Sbjct: 67 HGRMLLSGNTIAMLVPGGKKN 87
>gi|6320994|ref|NP_011073.1| Lsm5p [Saccharomyces cerevisiae S288c]
gi|731523|sp|P40089.1|LSM5_YEAST RecName: Full=U6 snRNA-associated Sm-like protein LSm5
gi|603386|gb|AAB64673.1| Yer146wp [Saccharomyces cerevisiae]
gi|45269457|gb|AAS56109.1| YER146W [Saccharomyces cerevisiae]
gi|151944864|gb|EDN63123.1| snRNP protein [Saccharomyces cerevisiae YJM789]
gi|190405705|gb|EDV08972.1| snRNP protein [Saccharomyces cerevisiae RM11-1a]
gi|256272052|gb|EEU07064.1| Lsm5p [Saccharomyces cerevisiae JAY291]
gi|259146073|emb|CAY79333.1| Lsm5p [Saccharomyces cerevisiae EC1118]
gi|285811779|tpg|DAA07807.1| TPA: Lsm5p [Saccharomyces cerevisiae S288c]
gi|349577808|dbj|GAA22976.1| K7_Lsm5p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392299849|gb|EIW10941.1| Lsm5p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 93
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 57/85 (67%), Gaps = 5/85 (5%)
Query: 7 QLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR-RITKL 65
++LP E+ID+ I K+ ++++ ++E GTL GFD +VN++LED E+ I E R K+
Sbjct: 5 EILPLEVIDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEKV 64
Query: 66 DQ----ILLNGNNIAILVPGGSPDP 86
Q +LL+GNNIAILVPGG P
Sbjct: 65 MQHHGRMLLSGNNIAILVPGGKKTP 89
>gi|344302358|gb|EGW32663.1| hypothetical protein SPAPADRAFT_61726 [Spathaspora passalidarum
NRRL Y-27907]
Length = 84
Score = 72.4 bits (176), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 52/73 (71%), Gaps = 2/73 (2%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQ 67
+LP E+ID+ +G+K+ V+M DKE G L GFD YVNMVLEDV EI EG + + +
Sbjct: 10 ILPLEIIDKSVGNKVKVLMTSDKEFYGKLIGFDDYVNMVLEDVV--EIDNEGTKSDPVKK 67
Query: 68 ILLNGNNIAILVP 80
+LLNG ++A+++P
Sbjct: 68 MLLNGGHVAMIIP 80
>gi|401625995|gb|EJS43964.1| lsm5p [Saccharomyces arboricola H-6]
Length = 93
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 57/85 (67%), Gaps = 5/85 (5%)
Query: 7 QLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR-RITKL 65
++LP E+ID+ I ++ ++++ ++E GTL GFD +VN++LED E+ I E R K+
Sbjct: 5 EILPLEVIDKTINQRVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDETRNEKV 64
Query: 66 DQ----ILLNGNNIAILVPGGSPDP 86
Q +LL+GNNIAILVPGG P
Sbjct: 65 MQHHGRMLLSGNNIAILVPGGKKSP 89
>gi|448534872|ref|XP_003870851.1| hypothetical protein CORT_0G00330 [Candida orthopsilosis Co
90-125]
gi|380355207|emb|CCG24723.1| hypothetical protein CORT_0G00330 [Candida orthopsilosis]
Length = 96
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 52/79 (65%), Gaps = 5/79 (6%)
Query: 5 PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLED---VTEYEITAEGRR 61
P Q+LP E+IDR IG K+ ++M DKE GTL GFD YVNMVLED VT+ E
Sbjct: 15 PQQVLPLEVIDRSIGKKVRILMTSDKEFRGTLIGFDDYVNMVLEDVTVVTDNNDKDEQDV 74
Query: 62 ITKLDQILLNGNNIAILVP 80
I K ++LLNG +A+++P
Sbjct: 75 IVK--KMLLNGGQVAMIIP 91
>gi|148672764|gb|EDL04711.1| mCG13108, isoform CRA_b [Mus musculus]
gi|149033253|gb|EDL88054.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
(predicted), isoform CRA_a [Rattus norvegicus]
gi|431909053|gb|ELK12644.1| U6 snRNA-associated Sm-like protein LSm5 [Pteropus alecto]
Length = 59
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/40 (85%), Positives = 38/40 (95%)
Query: 43 VNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 82
++MVLEDVTE+EIT EGRRITKLDQILLNGNNI +LVPGG
Sbjct: 15 LDMVLEDVTEFEITPEGRRITKLDQILLNGNNITMLVPGG 54
>gi|119482644|ref|XP_001261350.1| small nuclear ribonucleoprotein (LSM5), putative [Neosartorya
fischeri NRRL 181]
gi|119409505|gb|EAW19453.1| small nuclear ribonucleoprotein (LSM5), putative [Neosartorya
fischeri NRRL 181]
Length = 61
Score = 71.6 bits (174), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 38/57 (66%), Positives = 46/57 (80%), Gaps = 3/57 (5%)
Query: 26 MKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 82
MKGDKE GTL GFD YVNMVLEDVTE++ + G ++ KL +ILLNGNNI +L+PGG
Sbjct: 1 MKGDKEFSGTLLGFDDYVNMVLEDVTEFDYS--GAQV-KLPKILLNGNNICMLIPGG 54
>gi|367010514|ref|XP_003679758.1| hypothetical protein TDEL_0B04180 [Torulaspora delbrueckii]
gi|359747416|emb|CCE90547.1| hypothetical protein TDEL_0B04180 [Torulaspora delbrueckii]
Length = 85
Score = 71.2 bits (173), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 55/79 (69%), Gaps = 3/79 (3%)
Query: 7 QLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE--YEITAEGRRITK 64
++LP E+ID+ I +W++++ ++E GTL GFD +VN+++ED E Y E +I +
Sbjct: 5 EILPLEIIDKTISQPVWIVLQSNREFTGTLVGFDDFVNVIIEDAVEWVYNSKFEDEKILE 64
Query: 65 LD-QILLNGNNIAILVPGG 82
++LL+GNNIA+LVPGG
Sbjct: 65 HHGRMLLSGNNIAMLVPGG 83
>gi|156843124|ref|XP_001644631.1| hypothetical protein Kpol_526p26 [Vanderwaltozyma polyspora DSM
70294]
gi|156115278|gb|EDO16773.1| hypothetical protein Kpol_526p26 [Vanderwaltozyma polyspora DSM
70294]
Length = 86
Score = 70.9 bits (172), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 53/78 (67%), Gaps = 3/78 (3%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLD- 66
+LP E+ID+ I +W+I++ ++E G L GFD +VN+++ED EY + T+L
Sbjct: 7 ILPLEIIDKTINQPVWIILQSNREFTGKLVGFDDFVNVIIEDAVEYITDNHNQCDTELRH 66
Query: 67 --QILLNGNNIAILVPGG 82
++LL+GNNIA+LVPGG
Sbjct: 67 HGRMLLSGNNIAMLVPGG 84
>gi|367001532|ref|XP_003685501.1| hypothetical protein TPHA_0D04330 [Tetrapisispora phaffii CBS
4417]
gi|357523799|emb|CCE63067.1| hypothetical protein TPHA_0D04330 [Tetrapisispora phaffii CBS
4417]
Length = 86
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 53/80 (66%), Gaps = 5/80 (6%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRR----IT 63
LLP E+ID+ I +W+I++ ++E GTL GFD +VN+++ED EY IT +
Sbjct: 7 LLPLEIIDKTINQNVWIILQSNREFTGTLIGFDDFVNVIIEDAVEY-ITRNNDDDDIVMK 65
Query: 64 KLDQILLNGNNIAILVPGGS 83
++LL+GNNIA+LVPGG
Sbjct: 66 HHGRMLLSGNNIAMLVPGGK 85
>gi|405117379|gb|AFR92154.1| hypothetical protein CNAG_00016 [Cryptococcus neoformans var.
grubii H99]
Length = 49
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/47 (68%), Positives = 38/47 (80%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
S +LP EL+DRCIGS IWV+MK ++E GTL GFD YVNMVL+DV E
Sbjct: 3 STILPLELVDRCIGSPIWVLMKNEREFTGTLMGFDDYVNMVLKDVKE 49
>gi|448080005|ref|XP_004194518.1| Piso0_005017 [Millerozyma farinosa CBS 7064]
gi|359375940|emb|CCE86522.1| Piso0_005017 [Millerozyma farinosa CBS 7064]
Length = 92
Score = 70.5 bits (171), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 51/74 (68%), Gaps = 2/74 (2%)
Query: 7 QLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLD 66
+LP E+ID+ IG KI V++ KE GTL GFD YVN+VLE+V E++ A +I K
Sbjct: 17 NILPLEVIDKSIGHKIRVLLTNTKEFHGTLVGFDDYVNVVLENVEEFDGDASSGKIVK-- 74
Query: 67 QILLNGNNIAILVP 80
++LLNG IA+LVP
Sbjct: 75 KMLLNGGQIAMLVP 88
>gi|448084481|ref|XP_004195616.1| Piso0_005017 [Millerozyma farinosa CBS 7064]
gi|359377038|emb|CCE85421.1| Piso0_005017 [Millerozyma farinosa CBS 7064]
Length = 92
Score = 70.1 bits (170), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 51/74 (68%), Gaps = 2/74 (2%)
Query: 7 QLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLD 66
+LP E+ID+ IG KI V++ KE GTL GFD YVN+VLE+V E++ A +I K
Sbjct: 17 NILPLEVIDKSIGHKIRVLLTNTKEFHGTLVGFDDYVNVVLENVEEFDGDAASGKIVK-- 74
Query: 67 QILLNGNNIAILVP 80
++LLNG IA+LVP
Sbjct: 75 KMLLNGGQIAMLVP 88
>gi|254586103|ref|XP_002498619.1| ZYRO0G14696p [Zygosaccharomyces rouxii]
gi|238941513|emb|CAR29686.1| ZYRO0G14696p [Zygosaccharomyces rouxii]
Length = 86
Score = 70.1 bits (170), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 56/78 (71%), Gaps = 3/78 (3%)
Query: 7 QLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLD 66
++LP E+ID+ +G +W++++ ++E GTL GFD +VN+++ED E + A+ + I +
Sbjct: 5 EILPLEIIDKTVGQPVWIVLQSNREFTGTLIGFDDFVNVIVEDAKEVTVGADLQDIPVMQ 64
Query: 67 ---QILLNGNNIAILVPG 81
++LL+GN+IA+LVPG
Sbjct: 65 HKGRMLLSGNSIAMLVPG 82
>gi|126138356|ref|XP_001385701.1| hypothetical protein PICST_23784 [Scheffersomyces stipitis CBS
6054]
gi|126092979|gb|ABN67672.1| predicted protein, partial [Scheffersomyces stipitis CBS 6054]
Length = 73
Score = 68.6 bits (166), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/74 (45%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQ 67
+LP E+ID+ IG +I V+M DKE G L GFD +VNMVLEDV E + + ++ K +
Sbjct: 2 VLPLEIIDKSIGHEIRVLMTNDKEFTGKLVGFDDFVNMVLEDVREIDSDVKSDKVIK--K 59
Query: 68 ILLNGNNIAILVPG 81
+LLNG +A+++P
Sbjct: 60 MLLNGGQVAMIIPA 73
>gi|410076164|ref|XP_003955664.1| hypothetical protein KAFR_0B02310 [Kazachstania africana CBS
2517]
gi|372462247|emb|CCF56529.1| hypothetical protein KAFR_0B02310 [Kazachstania africana CBS
2517]
Length = 87
Score = 68.2 bits (165), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 53/81 (65%), Gaps = 3/81 (3%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLD- 66
+LP E+ID+ I +W+I++ ++E GTL GFD +VN++++D EY + G ++
Sbjct: 6 VLPLEVIDKTINQPVWIILQSNREFTGTLVGFDDFVNVIIDDAKEYIVNDNGENELVMEH 65
Query: 67 --QILLNGNNIAILVPGGSPD 85
++LL+G NI +LVPGG D
Sbjct: 66 HGRLLLSGGNINMLVPGGKKD 86
>gi|354548281|emb|CCE45017.1| hypothetical protein CPAR2_700210 [Candida parapsilosis]
Length = 97
Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 52/77 (67%), Gaps = 4/77 (5%)
Query: 7 QLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK-- 64
Q+LP E+IDR IG K+ ++M DKE GTL GFD +VNMVLEDVT ++ TK
Sbjct: 17 QVLPLEVIDRSIGKKVRILMTSDKEFRGTLIGFDDFVNMVLEDVT-VVTDSDNDADTKDE 75
Query: 65 -LDQILLNGNNIAILVP 80
+ ++LLNG +A+++P
Sbjct: 76 VVKKMLLNGGQVAMIIP 92
>gi|322696272|gb|EFY88067.1| putative U6 snRNA-associated protein [Metarhizium acridum CQMa
102]
Length = 81
Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/78 (51%), Positives = 47/78 (60%), Gaps = 4/78 (5%)
Query: 6 SQLLP-SELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK 64
SQLLP E C + E GTL GFD YVNMVLEDVTE++ + TK
Sbjct: 3 SQLLPLGEACLECAKFDTGEEANSELEFSGTLVGFDDYVNMVLEDVTEFDYSG---THTK 59
Query: 65 LDQILLNGNNIAILVPGG 82
L +ILLNGNNI +L+PGG
Sbjct: 60 LPKILLNGNNICMLIPGG 77
>gi|115620561|ref|XP_797604.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Strongylocentrotus purpuratus]
Length = 43
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/43 (76%), Positives = 37/43 (86%), Gaps = 1/43 (2%)
Query: 45 MVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPDPE 87
MVLEDV E+E TAEGRR+TKLDQILLNGNNI +L+P GS PE
Sbjct: 1 MVLEDVVEFETTAEGRRVTKLDQILLNGNNITMLIP-GSEGPE 42
>gi|320163655|gb|EFW40554.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 43
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/38 (81%), Positives = 35/38 (92%)
Query: 45 MVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 82
MVLEDVTE+EITA+GR+ T LDQILLNGNNI +LVPGG
Sbjct: 1 MVLEDVTEFEITADGRKTTHLDQILLNGNNICLLVPGG 38
>gi|148672765|gb|EDL04712.1| mCG13108, isoform CRA_c [Mus musculus]
Length = 59
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/45 (62%), Positives = 39/45 (86%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLE 48
NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +V+++ +
Sbjct: 8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVSILFK 52
>gi|149033254|gb|EDL88055.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
(predicted), isoform CRA_b [Rattus norvegicus]
Length = 59
Score = 66.6 bits (161), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 38/44 (86%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVL 47
NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +V+++
Sbjct: 8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVSILF 51
>gi|366987137|ref|XP_003673335.1| hypothetical protein NCAS_0A03890 [Naumovozyma castellii CBS
4309]
gi|342299198|emb|CCC66947.1| hypothetical protein NCAS_0A03890 [Naumovozyma castellii CBS
4309]
Length = 90
Score = 66.2 bits (160), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 57/83 (68%), Gaps = 7/83 (8%)
Query: 8 LLPSELIDRCIGSKIWVIMKG--DKELVGTLKGFDVYVNMVLEDVTEYEI--TAEGRRIT 63
+LP E+ID+ IG +W+I++ ++E GTL GFD +VN+++ED E+ I + + I
Sbjct: 7 VLPLEVIDKTIGQAVWIILQSQPNREFTGTLIGFDDFVNVIIEDAVEWGIDPNDDFKEII 66
Query: 64 KLD---QILLNGNNIAILVPGGS 83
++ ++LL+GNNIA+LVPGG
Sbjct: 67 IMEHHGRMLLSGNNIAMLVPGGK 89
>gi|149033256|gb|EDL88057.1| LSM5 homolog, U6 small nuclear RNA associated (S. cerevisiae)
(predicted), isoform CRA_d [Rattus norvegicus]
Length = 59
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/40 (70%), Positives = 35/40 (87%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYV 43
NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +V
Sbjct: 8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFV 47
>gi|67539018|ref|XP_663283.1| hypothetical protein AN5679.2 [Aspergillus nidulans FGSC A4]
gi|40743582|gb|EAA62772.1| hypothetical protein AN5679.2 [Aspergillus nidulans FGSC A4]
Length = 110
Score = 65.9 bits (159), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 52/83 (62%), Gaps = 7/83 (8%)
Query: 3 HNPSQLLPSELIDRCIGSKIWVIMKGDK---ELVGTLKGFDVYVNMVLEDVTEYEITAEG 59
H PS L S+ + C S + M E GTL GFD YVNMVLEDVTE++ T G
Sbjct: 25 HIPSALYNSQKV-FCWESPAYPKMASQLLPLEFSGTLLGFDDYVNMVLEDVTEFDYT--G 81
Query: 60 RRITKLDQILLNGNNIAILVPGG 82
++ KL +ILLNGNNI +L+PGG
Sbjct: 82 AQV-KLPKILLNGNNICMLIPGG 103
>gi|406861058|gb|EKD14114.1| LSM domain-containing protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 59
Score = 65.5 bits (158), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/52 (65%), Positives = 39/52 (75%), Gaps = 3/52 (5%)
Query: 26 MKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI 77
MKGDKE GTL GFD YVNMVLEDVTE++ + TKL +ILLNGNNI +
Sbjct: 1 MKGDKEFSGTLLGFDDYVNMVLEDVTEFDYSGNH---TKLSKILLNGNNICM 49
>gi|322704991|gb|EFY96580.1| small nuclear ribonucleoprotein (LSM5), putative [Metarhizium
anisopliae ARSEF 23]
Length = 100
Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 54/86 (62%), Gaps = 11/86 (12%)
Query: 5 PSQ--LLPS----ELIDRCIGSKIWVIMKGDKEL--VGTLKGFDVYVNMVLEDVTEYEIT 56
PSQ +LP+ ELID + + + EL GTL GFD YVNMVLEDVTE++ +
Sbjct: 14 PSQNLILPADSRVELIDNLKSANFNTGEEANSELEFSGTLIGFDDYVNMVLEDVTEFDYS 73
Query: 57 AEGRRITKLDQILLNGNNIAILVPGG 82
TKL +ILLNGNNI +L+PGG
Sbjct: 74 G---THTKLPKILLNGNNICMLIPGG 96
>gi|164426888|ref|XP_001728350.1| hypothetical protein NCU03766 [Neurospora crassa OR74A]
gi|157071516|gb|EDO65259.1| hypothetical protein NCU03766 [Neurospora crassa OR74A]
Length = 65
Score = 65.1 bits (157), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 39/52 (75%), Gaps = 3/52 (5%)
Query: 31 ELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 82
E GTL GFD YVNMVLEDVTE++ + TKL +ILLNGNNI +L+PGG
Sbjct: 9 EFAGTLVGFDDYVNMVLEDVTEFDYSGNH---TKLKKILLNGNNICMLIPGG 57
>gi|50290221|ref|XP_447542.1| hypothetical protein [Candida glabrata CBS 138]
gi|49526852|emb|CAG60479.1| unnamed protein product [Candida glabrata]
Length = 90
Score = 64.3 bits (155), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 36/82 (43%), Positives = 56/82 (68%), Gaps = 7/82 (8%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY--EITA-EGRR--- 61
+LP E+ID+ I ++ +I++ ++E G L GFD +VN++LED EY EITA +G +
Sbjct: 6 VLPLEVIDKTIDQQVHIILQSNREFSGKLVGFDEFVNVILEDPIEYTTEITANDGLKSEV 65
Query: 62 -ITKLDQILLNGNNIAILVPGG 82
+ ++LL+GNNI +LVPGG
Sbjct: 66 VMEHHGRMLLSGNNITMLVPGG 87
>gi|395857071|ref|XP_003800936.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Otolemur garnettii]
Length = 59
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 46/60 (76%), Gaps = 2/60 (3%)
Query: 26 MKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPD 85
MK +KE+ G L GFD +V+MVLEDVTE ++T EG RITKLD I LNGN+I +LV G P+
Sbjct: 1 MKSNKEIAGPLLGFDDFVSMVLEDVTE-KMTPEG-RITKLDLIPLNGNDITMLVSGEGPE 58
>gi|148672766|gb|EDL04713.1| mCG13108, isoform CRA_d [Mus musculus]
Length = 46
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/39 (69%), Positives = 34/39 (87%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVY 42
NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +
Sbjct: 8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDF 46
>gi|390343618|ref|XP_003725919.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm5-like
[Strongylocentrotus purpuratus]
Length = 63
Score = 63.9 bits (154), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 27/43 (62%), Positives = 37/43 (86%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMV 46
NPS LLP EL+D+CIGS+I ++MK DKE+VGTL GFD +V+++
Sbjct: 5 NPSHLLPLELVDKCIGSRIHIVMKTDKEIVGTLLGFDDFVSIL 47
>gi|344228576|gb|EGV60462.1| hypothetical protein CANTEDRAFT_116517 [Candida tenuis ATCC
10573]
Length = 97
Score = 62.8 bits (151), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/73 (46%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
S +LP E+ID+ IG + V++ DKE G L GFD +VN+VLEDVTE + +EG +
Sbjct: 22 STVLPLEIIDKSIGKVVTVLLTTDKEFTGKLVGFDDFVNVVLEDVTETD--SEGNTDGPV 79
Query: 66 DQILLNGNNIAIL 78
+LLNG IA++
Sbjct: 80 KIMLLNGGQIAMI 92
>gi|134080970|emb|CAK41484.1| unnamed protein product [Aspergillus niger]
Length = 59
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/53 (60%), Positives = 41/53 (77%), Gaps = 3/53 (5%)
Query: 30 KELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 82
E GTL GFD YVNMVLEDVTE++ + G ++ KL +ILLNGNN+ +L+PGG
Sbjct: 3 SEFAGTLLGFDDYVNMVLEDVTEFDYS--GSQV-KLPKILLNGNNVCMLIPGG 52
>gi|254564981|ref|XP_002489601.1| hypothetical protein [Komagataella pastoris GS115]
gi|238029397|emb|CAY67320.1| Hypothetical protein PAS_chr1-3_0256 [Komagataella pastoris
GS115]
gi|328350024|emb|CCA36424.1| Probable U6 snRNA-associated Sm-like protein LSm5 [Komagataella
pastoris CBS 7435]
Length = 79
Score = 62.4 bits (150), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 49/77 (63%), Gaps = 4/77 (5%)
Query: 3 HNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRI 62
+ S++LP EL+D+ IGS++ +++ D+E GTL GFD +VN++L DVTE R
Sbjct: 5 NTDSEILPLELVDKAIGSQVRILLINDREFEGTLVGFDEFVNVILSDVTETGPEGTIHR- 63
Query: 63 TKLDQILLNGNNIAILV 79
D++LL G IA+ V
Sbjct: 64 ---DEMLLTGTTIAMFV 77
>gi|183232658|ref|XP_001913749.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
gi|169801936|gb|EDS89477.1| hypothetical protein EHI_076840 [Entamoeba histolytica HM-1:IMSS]
gi|407044320|gb|EKE42513.1| LSM domain containing protein [Entamoeba nuttalli P19]
gi|449703260|gb|EMD43742.1| LSM domain containing protein [Entamoeba histolytica KU27]
Length = 83
Score = 60.1 bits (144), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 47/78 (60%), Gaps = 1/78 (1%)
Query: 9 LPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRI-TKLDQ 67
LP++++ I +K+W+I+K +E VG +KG D Y N++L+D EYEI T+
Sbjct: 5 LPTQILLEWINTKVWIILKSQREFVGIMKGIDEYTNIILQDCIEYEIKDNKENYQTQHKL 64
Query: 68 ILLNGNNIAILVPGGSPD 85
IL++GN I ++ G D
Sbjct: 65 ILVSGNGIDMISKGEKTD 82
>gi|320163656|gb|EFW40555.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 139
Score = 56.6 bits (135), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/41 (58%), Positives = 35/41 (85%)
Query: 5 PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNM 45
P++L +ELID+CIGS+I ++MK +KELVGTL GFD +V++
Sbjct: 86 PTRLTQTELIDKCIGSRIHIVMKSEKELVGTLLGFDDFVSI 126
>gi|294495451|ref|YP_003541944.1| Small nuclear ribonucleoprotein, LSM family [Methanohalophilus
mahii DSM 5219]
gi|292666450|gb|ADE36299.1| Small nuclear ribonucleoprotein, LSM family [Methanohalophilus
mahii DSM 5219]
Length = 75
Score = 56.2 bits (134), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELV-GTLKGFDVYVNMVLEDVTEYEITAEGRRITKLD 66
+ P++ + + +GS+I V MKGD L+ G LK D Y+N+ LED E EG R L
Sbjct: 1 MFPNKKVQKLVGSRIQVEMKGDHSLLDGILKSADDYMNLHLEDTFE---MVEGERQRSLG 57
Query: 67 QILLNGNNIAILVPG 81
++L GNNI ++VP
Sbjct: 58 SVVLRGNNIILIVPA 72
>gi|91772246|ref|YP_564938.1| small ribonucleoprotein [Methanococcoides burtonii DSM 6242]
gi|91711261|gb|ABE51188.1| Sm or Sm-like protein, RNA-binding [Methanococcoides burtonii DSM
6242]
Length = 65
Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 44/64 (68%), Gaps = 4/64 (6%)
Query: 18 IGSKIWVIMKGDKELV-GTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIA 76
IGSK+ V MKGD+ ++ GTL+ D Y+N+ L D TE A+G+R+ L ++L GNNI
Sbjct: 2 IGSKVQVEMKGDQHILEGTLQSADDYLNLHLVDTTE---IADGQRLRSLGSVVLRGNNII 58
Query: 77 ILVP 80
++VP
Sbjct: 59 LIVP 62
>gi|336476743|ref|YP_004615884.1| Sm ribonucleoprotein-like protein [Methanosalsum zhilinae DSM 4017]
gi|335930124|gb|AEH60665.1| Like-Sm ribonucleoprotein core [Methanosalsum zhilinae DSM 4017]
Length = 102
Score = 52.8 bits (125), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 50/84 (59%), Gaps = 7/84 (8%)
Query: 1 MAHNPSQ---LLPSELIDRCIGSKIWVIMKGDKELV-GTLKGFDVYVNMVLEDVTEYEIT 56
M +N S+ L P++ + + IGSKI V MKGD ++ G LK D Y+N+ L D E
Sbjct: 20 MKNNLSEDTTLFPNKKVQKLIGSKIQVEMKGDLHILEGVLKSADDYLNLHLVDTVEI--- 76
Query: 57 AEGRRITKLDQILLNGNNIAILVP 80
++G R+ L ++L GNNI ++ P
Sbjct: 77 SDGERLRSLGSVVLRGNNIILVTP 100
>gi|378754575|gb|EHY64606.1| hypothetical protein NERG_02416 [Nematocida sp. 1 ERTm2]
Length = 109
Score = 52.4 bits (124), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 44/77 (57%)
Query: 11 SELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILL 70
+ L++ + I+V+M+ K +VGTL+ +D Y N++LED TEY ++ + + +LL
Sbjct: 11 TRLMEEYLDKPIFVVMRDGKYMVGTLRSYDQYYNILLEDSTEYTTSSTEYSSIESESVLL 70
Query: 71 NGNNIAILVPGGSPDPE 87
G NI +L G E
Sbjct: 71 RGENIILLGEGTFSHEE 87
>gi|189193623|ref|XP_001933150.1| hypothetical protein PTRG_02817 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187978714|gb|EDU45340.1| hypothetical protein PTRG_02817 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 86
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/68 (48%), Positives = 38/68 (55%), Gaps = 16/68 (23%)
Query: 31 ELVGTLKGFDVYVNMVLEDVTE------------YEITAEGRRIT----KLDQILLNGNN 74
E G L GFD YVNMVLEDVTE + A+G KL +ILLNGNN
Sbjct: 10 EFTGKLVGFDDYVNMVLEDVTEMYRQPLIAINMDFVTNADGSDPAEGNIKLPKILLNGNN 69
Query: 75 IAILVPGG 82
I ++VPGG
Sbjct: 70 ICMMVPGG 77
>gi|408381788|ref|ZP_11179336.1| small nuclear ribonucleoprotein [Methanobacterium formicicum DSM
3637]
gi|407815719|gb|EKF86289.1| small nuclear ribonucleoprotein [Methanobacterium formicicum DSM
3637]
Length = 80
Score = 52.0 bits (123), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P +++ R + S++ + +KG +E G L+ FD+++N+VL D E E RR L +L
Sbjct: 12 PLDVLGRALNSQVLIKLKGGREFRGVLESFDMHMNLVLNDAEELESGESSRR---LGVVL 68
Query: 70 LNGNNIAILVPG 81
+ G+NI + PG
Sbjct: 69 IRGDNIVYISPG 80
>gi|410720309|ref|ZP_11359665.1| small nuclear ribonucleoprotein [Methanobacterium sp. Maddingley
MBC34]
gi|410601091|gb|EKQ55611.1| small nuclear ribonucleoprotein [Methanobacterium sp. Maddingley
MBC34]
Length = 100
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P +++ R + S++ + +KG +E G L+ FD+++N+VL D E E RR L +L
Sbjct: 32 PLDVLGRALNSQVLIKLKGGREFRGVLESFDMHMNLVLNDAEELESGESSRR---LGVVL 88
Query: 70 LNGNNIAILVPG 81
+ G+NI + PG
Sbjct: 89 IRGDNIVYISPG 100
>gi|284161893|ref|YP_003400516.1| Sm ribonucleoprotein-like protein [Archaeoglobus profundus DSM
5631]
gi|284011890|gb|ADB57843.1| Like-Sm ribonucleoprotein core [Archaeoglobus profundus DSM 5631]
Length = 75
Score = 51.6 bits (122), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDK-ELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLD 66
+LP++++ +G I V MKG++ ELVG L+G D Y+N+ L + E G +I L
Sbjct: 1 MLPNQMVRSLVGKMIRVEMKGEENELVGVLEGVDDYMNLCLTNAME---CKNGEKIRNLG 57
Query: 67 QILLNGNNIAILVP 80
I+L GNNI I+ P
Sbjct: 58 TIVLRGNNIVIIQP 71
>gi|73671030|ref|YP_307045.1| small nuclear riboprotein-like protein [Methanosarcina barkeri
str. Fusaro]
gi|72398192|gb|AAZ72465.1| Small nuclear ribonucleoprotein, LSM family [Methanosarcina
barkeri str. Fusaro]
Length = 74
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELV-GTLKGFDVYVNMVLEDVTEYEITAEGRRITKLD 66
+ P++ + + +GS+I V MKGD L+ GTLK D Y+N+ L D E +G ++ L
Sbjct: 1 MFPNKKVQKIVGSRIQVEMKGDLNLLEGTLKSVDDYMNLHLVDTME---IVKGEKVRSLG 57
Query: 67 QILLNGNNIAILVP 80
++L GNNI ++ P
Sbjct: 58 SVVLRGNNIILITP 71
>gi|21228485|ref|NP_634407.1| small nuclear riboprotein-like protein [Methanosarcina mazei Go1]
gi|20906968|gb|AAM32079.1| Small nuclear riboprotein-like protein [Methanosarcina mazei Go1]
Length = 74
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELV-GTLKGFDVYVNMVLEDVTEYEITAEGRRITKLD 66
+ P++ + + +GS+I V MKGD L+ GTLK D Y+N+ L D E +G ++ L
Sbjct: 1 MFPNKKVQKIVGSRIQVEMKGDLNLLEGTLKSVDDYMNLHLVDTME---IVKGEKVRSLG 57
Query: 67 QILLNGNNIAILVP 80
++L GNNI ++ P
Sbjct: 58 SVVLRGNNIILITP 71
>gi|82617313|emb|CAI64218.1| small nuclear riboprotein-like protein [uncultured archaeon]
Length = 73
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELV-GTLKGFDVYVNMVLEDVTEYEITAEGRRITKLD 66
+ P++ + IGS++ V MKGD ++ G L+ D Y+N+ + D E A+G R+ L
Sbjct: 1 MFPTKKVQSMIGSRVQVEMKGDAHILEGELESVDDYLNLHMLDTVE---IADGERLRSLG 57
Query: 67 QILLNGNNIAILVP 80
++L GNNI ++VP
Sbjct: 58 SVVLRGNNIILIVP 71
>gi|84489967|ref|YP_448199.1| small nuclear ribonucleoprotein [Methanosphaera stadtmanae DSM
3091]
gi|84373286|gb|ABC57556.1| putative snRNP Sm-like protein [Methanosphaera stadtmanae DSM
3091]
Length = 81
Score = 50.8 bits (120), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 47/79 (59%), Gaps = 3/79 (3%)
Query: 3 HNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRI 62
+N + P + + + + S++ + +KG KE G L+ FD+++N+VL D E + +G I
Sbjct: 6 NNNNTSRPLDALGQALNSQVLIKLKGGKEFRGALQSFDMHMNLVLNDAEEIK---DGESI 62
Query: 63 TKLDQILLNGNNIAILVPG 81
+L +L+ G+NI + PG
Sbjct: 63 CRLGVVLVRGDNIVYISPG 81
>gi|298675778|ref|YP_003727528.1| Sm ribonucleoprotein-like protein [Methanohalobium evestigatum
Z-7303]
gi|298288766|gb|ADI74732.1| Like-Sm ribonucleoprotein core [Methanohalobium evestigatum
Z-7303]
Length = 74
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 8 LLPSELIDRCIGSKIWVIMKGD-KELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLD 66
+ P++ + + +GSK+ V MKGD +L G L+ D Y+N+ L + E A G R+ L
Sbjct: 1 MFPNKKVHKLLGSKVQVEMKGDLHQLEGVLESVDDYLNLHLVESVE---IANGERLRSLG 57
Query: 67 QILLNGNNIAILVP 80
++L GNNI +L P
Sbjct: 58 SVVLRGNNIVLLAP 71
>gi|300122577|emb|CBK23146.2| unnamed protein product [Blastocystis hominis]
Length = 61
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 33/53 (62%)
Query: 26 MKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
MKG+ E G L+GFD Y+ M+LEDVT +T G K+ + L+NG I ++
Sbjct: 1 MKGETEFTGILRGFDAYLTMILEDVTVSTLTNHGVVSNKMSRALVNGRCICMV 53
>gi|224117550|ref|XP_002331664.1| predicted protein [Populus trichocarpa]
gi|224143797|ref|XP_002325079.1| predicted protein [Populus trichocarpa]
gi|118483404|gb|ABK93602.1| unknown [Populus trichocarpa]
gi|222866513|gb|EEF03644.1| predicted protein [Populus trichocarpa]
gi|222874083|gb|EEF11214.1| predicted protein [Populus trichocarpa]
Length = 88
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + SK IW+ + D + G + GFD Y+N+VLED E I + R+ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEVNIKKKSRK--SL 70
Query: 66 DQILLNGNNIAILVPGGS 83
+ILL G+NI +++ G
Sbjct: 71 GRILLKGDNITLMMNTGK 88
>gi|20090273|ref|NP_616348.1| Sm protein [Methanosarcina acetivorans C2A]
gi|19915270|gb|AAM04828.1| Sm protein [Methanosarcina acetivorans C2A]
Length = 74
Score = 50.4 bits (119), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELV-GTLKGFDVYVNMVLEDVTEYEITAEGRRITKLD 66
+ P++ + + +GS+I V MKGD L+ GTLK D Y+N+ L D E G ++ L
Sbjct: 1 MFPNKKVQKIVGSRIRVEMKGDLNLLEGTLKSVDDYMNLHLVDTME---IVRGEKVRSLG 57
Query: 67 QILLNGNNIAILVP 80
++L GNNI ++ P
Sbjct: 58 SVVLRGNNIILITP 71
>gi|288560538|ref|YP_003424024.1| LSM domain-containing protein [Methanobrevibacter ruminantium M1]
gi|288543248|gb|ADC47132.1| LSM domain-containing protein [Methanobrevibacter ruminantium M1]
Length = 77
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P + + + + S + + +KG++E G LK FD+++N+VL+D E E +G + +L +L
Sbjct: 10 PLDALGKAVNSPVLIKLKGEREFRGILKSFDLHMNLVLDDAEELE---KGEVLRRLGTVL 66
Query: 70 LNGNNIAILVP 80
+ G+NI + P
Sbjct: 67 IRGDNIVYISP 77
>gi|288930748|ref|YP_003434808.1| Like-Sm ribonucleoprotein core [Ferroglobus placidus DSM 10642]
gi|288892996|gb|ADC64533.1| Like-Sm ribonucleoprotein core [Ferroglobus placidus DSM 10642]
Length = 74
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 4/74 (5%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKE-LVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLD 66
+LP++++ IG ++ V MKG++ LVG L+ D Y+N+ L + EY+ +G +I L
Sbjct: 1 MLPNQMVKSLIGKEVRVEMKGEESSLVGRLESVDDYMNLHLSNAYEYK---DGEKIRVLG 57
Query: 67 QILLNGNNIAILVP 80
I+L GNNI ++ P
Sbjct: 58 DIVLRGNNIVLIQP 71
>gi|16082245|ref|NP_394696.1| small nuclear ribonucleoprotein [Thermoplasma acidophilum DSM
1728]
gi|11387090|sp|P57670.1|RUXX_THEAC RecName: Full=Putative snRNP Sm-like protein
gi|10640586|emb|CAC12364.1| small nuclear ribonucleoprotein related protein [Thermoplasma
acidophilum]
Length = 83
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
M P+ + P +++ + + + +KG++E G L+G+DVY+N+VL++ +E I E +
Sbjct: 1 MPKTPANVKPMDVLKSALSRNVLIDVKGNREYSGILEGYDVYMNIVLQNASEI-INGENK 59
Query: 61 RITKLDQILLNGNNIAILVP 80
+ D++L+ G+N+ + P
Sbjct: 60 GV--YDRVLVRGDNVIFVSP 77
>gi|147919071|ref|YP_687199.1| small nuclear riboprotein-like protein [Methanocella arvoryzae
MRE50]
gi|110622595|emb|CAJ37873.1| small nuclear riboprotein-like protein [Methanocella arvoryzae
MRE50]
Length = 74
Score = 50.1 bits (118), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELV-GTLKGFDVYVNMVLEDVTEYEITAEGRRITKLD 66
+ P++ + IG K+ V MKG+K ++ GTL D Y+N+ L D TE A G+++ L
Sbjct: 1 MFPNKKVQALIGQKVQVEMKGEKNILEGTLVSADDYLNLHLVDTTE---VAAGQKLRTLG 57
Query: 67 QILLNGNNIAILVP 80
++L GNNI +L P
Sbjct: 58 SVVLRGNNIILLNP 71
>gi|226529493|ref|NP_001148430.1| small nuclear ribonucleoprotein E [Zea mays]
gi|195619228|gb|ACG31444.1| small nuclear ribonucleoprotein E [Zea mays]
Length = 88
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + SK IW+ + D + G + GFD Y+N+VLED E + R+ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYINLVLEDAEEINVKKNTRK--SL 70
Query: 66 DQILLNGNNIAILVPGGS 83
+ILL G+NI +++ G
Sbjct: 71 GRILLKGDNITLMMNSGK 88
>gi|357146132|ref|XP_003573886.1| PREDICTED: small nuclear ribonucleoprotein E-like [Brachypodium
distachyon]
Length = 88
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + SK IW+ + D + G + GFD Y+N+VLED E I R+ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDMRIEGRIIGFDEYMNLVLEDAEEINIKKNTRK--SL 70
Query: 66 DQILLNGNNIAILVPGGS 83
+ILL G+NI +++ G
Sbjct: 71 GRILLKGDNITLMMNTGK 88
>gi|195606896|gb|ACG25278.1| small nuclear ribonucleoprotein E [Zea mays]
gi|195611048|gb|ACG27354.1| small nuclear ribonucleoprotein E [Zea mays]
gi|413947730|gb|AFW80379.1| small nuclear ribonucleoprotein E [Zea mays]
Length = 88
Score = 49.3 bits (116), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + SK IW+ + D + G + GFD Y+N+VLED E + R+ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEINVKKNTRK--SL 70
Query: 66 DQILLNGNNIAILVPGGS 83
+ILL G+NI +++ G
Sbjct: 71 GRILLKGDNITLMMNSGK 88
>gi|195638708|gb|ACG38822.1| small nuclear ribonucleoprotein E [Zea mays]
gi|223945527|gb|ACN26847.1| unknown [Zea mays]
gi|414875728|tpg|DAA52859.1| TPA: Small nuclear ribonucleoprotein E isoform 1 [Zea mays]
gi|414875729|tpg|DAA52860.1| TPA: Small nuclear ribonucleoprotein E isoform 2 [Zea mays]
Length = 88
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + SK IW+ + D + G + GFD Y+N+VLED E + R+ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEINVKKNTRKT--L 70
Query: 66 DQILLNGNNIAILVPGGS 83
+ILL G+NI +++ G
Sbjct: 71 GRILLKGDNITLMMNSGK 88
>gi|146304997|ref|YP_001192313.1| Sm ribonucleoprotein-like protein [Metallosphaera sedula DSM
5348]
gi|145703247|gb|ABP96389.1| Small nuclear ribonucleoprotein, LSM family [Metallosphaera
sedula DSM 5348]
Length = 75
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 44/69 (63%), Gaps = 3/69 (4%)
Query: 12 ELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLN 71
+L+ +GS + V +KG+KE+ G LK +D ++N+VL D E + EG+ K+ I++
Sbjct: 7 KLLAESVGSLVLVKLKGNKEVRGLLKSYDQHMNLVLSDSEEIQSDGEGK---KMGTIVIR 63
Query: 72 GNNIAILVP 80
G+N+ ++ P
Sbjct: 64 GDNVILISP 72
>gi|356562483|ref|XP_003549500.1| PREDICTED: small nuclear ribonucleoprotein E [Glycine max]
gi|255628153|gb|ACU14421.1| unknown [Glycine max]
Length = 88
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + SK IW+ + D + G + GFD Y+N+VL+D E I + R+ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVSIKKKSRKT--L 70
Query: 66 DQILLNGNNIAILVPGGS 83
+ILL G+NI +++ G
Sbjct: 71 GRILLKGDNITLMMNTGK 88
>gi|449444030|ref|XP_004139778.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cucumis
sativus]
gi|449444032|ref|XP_004139779.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cucumis
sativus]
gi|449502888|ref|XP_004161771.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cucumis
sativus]
Length = 88
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + SK IW+ + D + G + GFD Y+N+VL+D E + + R+ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKT--L 70
Query: 66 DQILLNGNNIAILVPGGS 83
+ILL G+NI +++ G
Sbjct: 71 GRILLKGDNITLMMNSGK 88
>gi|313586495|gb|ADR71258.1| small nuclear ribonucleoprotein E [Hevea brasiliensis]
Length = 88
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + SK IW+ + D + G + GFD Y+N+VL+D E I + R+ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDMRIEGRIIGFDEYMNLVLDDAEEVNIKKKTRK--SL 70
Query: 66 DQILLNGNNIAILVPGGS 83
+ILL G+NI +++ G
Sbjct: 71 GRILLKGDNITLMMNTGK 88
>gi|356547766|ref|XP_003542280.1| PREDICTED: small nuclear ribonucleoprotein E-like [Glycine max]
gi|255627911|gb|ACU14300.1| unknown [Glycine max]
Length = 88
Score = 48.9 bits (115), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + SK IW+ + D + G + GFD Y+N+VL+D E I + R+ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSRKT--L 70
Query: 66 DQILLNGNNIAILVPGGS 83
+ILL G+NI +++ G
Sbjct: 71 GRILLKGDNITLMMNTGK 88
>gi|304314789|ref|YP_003849936.1| small nuclear ribonucleoprotein [Methanothermobacter marburgensis
str. Marburg]
gi|302588248|gb|ADL58623.1| small nuclear ribonucleoprotein [Methanothermobacter marburgensis
str. Marburg]
Length = 78
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P + + + S + + +KGD+E G LK FD+++N+VL D E E +G +L +L
Sbjct: 11 PLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELE---DGEVTRRLGTVL 67
Query: 70 LNGNNIAILVP 80
+ G+NI + P
Sbjct: 68 IRGDNIVYISP 78
>gi|357145040|ref|XP_003573502.1| PREDICTED: small nuclear ribonucleoprotein E-like [Brachypodium
distachyon]
Length = 88
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + SK IW+ + D + G + GFD Y+N+VLED E + R+ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEINVKKNTRK--SL 70
Query: 66 DQILLNGNNIAILVPGGS 83
+ILL G+NI +++ G
Sbjct: 71 GRILLKGDNITLMMNTGK 88
>gi|13786869|pdb|1I81|A Chain A, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786870|pdb|1I81|B Chain B, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786871|pdb|1I81|C Chain C, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786872|pdb|1I81|D Chain D, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786873|pdb|1I81|E Chain E, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786874|pdb|1I81|F Chain F, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|13786875|pdb|1I81|G Chain G, Crystal Structure Of A Heptameric Lsm Protein From
Methanobacterium Thermoautotrophicum
gi|27573929|pdb|1MGQ|A Chain A, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573930|pdb|1MGQ|B Chain B, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573931|pdb|1MGQ|C Chain C, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573932|pdb|1MGQ|D Chain D, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573933|pdb|1MGQ|E Chain E, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573934|pdb|1MGQ|F Chain F, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
gi|27573935|pdb|1MGQ|G Chain G, Crystal Structure Of A Heptameric Sm-Like Protein From
Methanobacterium Thermoautotrophicum
Length = 83
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P + + + S + + +KGD+E G LK FD+++N+VL D E E +G +L +L
Sbjct: 16 PLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELE---DGEVTRRLGTVL 72
Query: 70 LNGNNIAILVP 80
+ G+NI + P
Sbjct: 73 IRGDNIVYISP 83
>gi|15678676|ref|NP_275791.1| small nuclear ribonucleoprotein [Methanothermobacter
thermautotrophicus str. Delta H]
gi|6094215|sp|O26745.1|RUXX_METTH RecName: Full=Putative snRNP Sm-like protein
gi|2621731|gb|AAB85154.1| conserved protein [Methanothermobacter thermautotrophicus str.
Delta H]
Length = 81
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P + + + S + + +KGD+E G LK FD+++N+VL D E E +G +L +L
Sbjct: 14 PLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELE---DGEVTRRLGTVL 70
Query: 70 LNGNNIAILVP 80
+ G+NI + P
Sbjct: 71 IRGDNIVYISP 81
>gi|148642242|ref|YP_001272755.1| small nuclear ribonucleoprotein [Methanobrevibacter smithii ATCC
35061]
gi|222444586|ref|ZP_03607101.1| hypothetical protein METSMIALI_00198 [Methanobrevibacter smithii
DSM 2375]
gi|261350875|ref|ZP_05976292.1| like-Sm ribonucleoprotein, core [Methanobrevibacter smithii DSM
2374]
gi|148551259|gb|ABQ86387.1| snRNP Sm-like protein [Methanobrevibacter smithii ATCC 35061]
gi|222434151|gb|EEE41316.1| LSM domain protein [Methanobrevibacter smithii DSM 2375]
gi|288860212|gb|EFC92510.1| like-Sm ribonucleoprotein, core [Methanobrevibacter smithii DSM
2374]
Length = 76
Score = 48.5 bits (114), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P + + + + S + + +KGD+E G LK FD+++N+VL D E + +G +L +L
Sbjct: 9 PLDALGKSVNSPVLIKLKGDREFRGILKSFDLHMNLVLNDAEELQ---DGEVTRRLGVVL 65
Query: 70 LNGNNIAILVP 80
+ G+NI + P
Sbjct: 66 IRGDNIVYISP 76
>gi|282848216|gb|ADB02889.1| small nuclear ribonucleoprotein polypeptide [Jatropha curcas]
Length = 88
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + SK IW+ + D + G + GFD Y+N+VL+D E + + R+ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKTRK--SL 70
Query: 66 DQILLNGNNIAILVPGGS 83
+ILL G+NI +++ G
Sbjct: 71 GRILLKGDNITLMMNSGK 88
>gi|294495046|ref|YP_003541539.1| Small nuclear ribonucleoprotein, LSM family [Methanohalophilus
mahii DSM 5219]
gi|292666045|gb|ADE35894.1| Small nuclear ribonucleoprotein, LSM family [Methanohalophilus
mahii DSM 5219]
Length = 72
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++++ + + + V +KG +E GTL+G+DV++N+VL++ E + EG I K+ ++
Sbjct: 5 PLDILNNALNTAVIVRLKGAREFRGTLQGYDVHMNLVLDEAEEIK---EGEIIRKIGSVV 61
Query: 70 LNGNNIAILVP 80
+ G+N+ + P
Sbjct: 62 VRGDNVVYVSP 72
>gi|387592500|gb|EIJ87524.1| hypothetical protein NEQG_02405 [Nematocida parisii ERTm3]
gi|387596986|gb|EIJ94606.1| hypothetical protein NEPG_00128 [Nematocida parisii ERTm1]
Length = 105
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 43/69 (62%)
Query: 13 LIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNG 72
L++ + I+V+++ + + G L+ +D Y N++LED+T+Y I+ +T+ + +LL G
Sbjct: 13 LLEEYLDKDIFVVLRDNTYIKGILRSYDQYYNILLEDITQYVISNNEYLLTESESVLLRG 72
Query: 73 NNIAILVPG 81
NI +L G
Sbjct: 73 ENIILLGEG 81
>gi|356508935|ref|XP_003523208.1| PREDICTED: small nuclear ribonucleoprotein E-like [Glycine max]
gi|356516401|ref|XP_003526883.1| PREDICTED: small nuclear ribonucleoprotein E [Glycine max]
gi|388501720|gb|AFK38926.1| unknown [Lotus japonicus]
Length = 88
Score = 48.1 bits (113), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + SK IW+ + D + G + GFD Y+N+VL+D E + + R+ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKT--L 70
Query: 66 DQILLNGNNIAILVPGGS 83
+ILL G+NI +++ G
Sbjct: 71 GRILLKGDNITLMMNTGK 88
>gi|48477793|ref|YP_023499.1| snRNP Sm-like protein [Picrophilus torridus DSM 9790]
gi|48430441|gb|AAT43306.1| snRNP Sm-like protein [Picrophilus torridus DSM 9790]
Length = 71
Score = 48.1 bits (113), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 46/73 (63%), Gaps = 5/73 (6%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQ 67
LLP ++++ + K+ +++K ++ L GTL G+D Y+NM L+D E + E +R KL
Sbjct: 3 LLPMKMLEESLNKKVSLLLKDNRVLEGTLAGYDEYMNMTLDDAEE---SGETQR--KLGT 57
Query: 68 ILLNGNNIAILVP 80
+++ G+N+ + P
Sbjct: 58 VVIRGSNVVRIAP 70
>gi|18417572|ref|NP_567844.1| small nuclear ribonucleoprotein E [Arabidopsis thaliana]
gi|297798942|ref|XP_002867355.1| hypothetical protein ARALYDRAFT_913445 [Arabidopsis lyrata subsp.
lyrata]
gi|21593343|gb|AAM65292.1| small nuclear ribonucleoprotein homolog [Arabidopsis thaliana]
gi|51968366|dbj|BAD42875.1| small nuclear ribonucleoprotein homolog [Arabidopsis thaliana]
gi|51968768|dbj|BAD43076.1| small nuclear ribonucleoprotein homolog [Arabidopsis thaliana]
gi|51971773|dbj|BAD44551.1| small nuclear ribonucleoprotein homolog [Arabidopsis thaliana]
gi|88010920|gb|ABD38873.1| At4g30330 [Arabidopsis thaliana]
gi|297313191|gb|EFH43614.1| hypothetical protein ARALYDRAFT_913445 [Arabidopsis lyrata subsp.
lyrata]
gi|332660353|gb|AEE85753.1| small nuclear ribonucleoprotein E [Arabidopsis thaliana]
Length = 88
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + SK IW+ + D + G + GFD Y+N+VL++ E I + R+ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKKKTRK--PL 70
Query: 66 DQILLNGNNIAILVPGGS 83
+ILL G+NI +++ G
Sbjct: 71 GRILLKGDNITLMMNAGK 88
>gi|333986739|ref|YP_004519346.1| snRNP Sm-like protein [Methanobacterium sp. SWAN-1]
gi|333824883|gb|AEG17545.1| snRNP Sm-like protein [Methanobacterium sp. SWAN-1]
Length = 80
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P +++ + + S++ + +KG +E G L FD+++N+VL D E E RR L +L
Sbjct: 12 PLDVLGKSLNSQVLIKLKGGREFRGVLNSFDMHMNLVLNDAEELESGESSRR---LGVVL 68
Query: 70 LNGNNIAILVP 80
+ G+NI + P
Sbjct: 69 IRGDNIVYISP 79
>gi|312136602|ref|YP_004003939.1| small nuclear ribonucleoprotein, lsm family [Methanothermus
fervidus DSM 2088]
gi|311224321|gb|ADP77177.1| Small nuclear ribonucleoprotein, LSM family [Methanothermus
fervidus DSM 2088]
Length = 80
Score = 47.8 bits (112), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P + + + + S + + +KG++E G LK FD+++N+VL D E E G KL +L
Sbjct: 13 PLDTLGKSLNSPVLIRLKGEREFRGILKSFDLHMNLVLNDAEEIE---NGEVTRKLGTVL 69
Query: 70 LNGNNIAILVP 80
+ G+NI + P
Sbjct: 70 IRGDNIVYISP 80
>gi|302765919|ref|XP_002966380.1| hypothetical protein SELMODRAFT_230895 [Selaginella
moellendorffii]
gi|302792841|ref|XP_002978186.1| hypothetical protein SELMODRAFT_176675 [Selaginella
moellendorffii]
gi|300154207|gb|EFJ20843.1| hypothetical protein SELMODRAFT_176675 [Selaginella
moellendorffii]
gi|300165800|gb|EFJ32407.1| hypothetical protein SELMODRAFT_230895 [Selaginella
moellendorffii]
Length = 88
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + SK +W+ + D + G + GFD Y+N+VL+D YEI+ + + L
Sbjct: 13 PINLIFRFLQSKATIQVWLFEQKDLRIEGRIIGFDEYMNLVLDDA--YEISLKKKSRKPL 70
Query: 66 DQILLNGNNIAILVPGGS 83
+ILL G+NI +++ G
Sbjct: 71 GRILLKGDNITLMMNTGK 88
>gi|21226441|ref|NP_632363.1| small nuclear ribonucleoprotein [Methanosarcina mazei Go1]
gi|452208952|ref|YP_007489066.1| snRNP Sm-like protein [Methanosarcina mazei Tuc01]
gi|30173324|sp|Q8PZZ9.1|RUXX_METMA RecName: Full=Putative snRNP Sm-like protein
gi|20904702|gb|AAM30035.1| putative snRNP Sm-like protein [Methanosarcina mazei Go1]
gi|452098854|gb|AGF95794.1| snRNP Sm-like protein [Methanosarcina mazei Tuc01]
Length = 72
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++++ + + + V +KG +E G LKG+D+++N+VL++ E EG ++K ++
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELR---EGEVVSKFSSVV 61
Query: 70 LNGNNIAILVP 80
+ G+N+ + P
Sbjct: 62 IRGDNVVYVSP 72
>gi|29726409|pdb|1LOJ|A Chain A, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726410|pdb|1LOJ|B Chain B, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726411|pdb|1LOJ|C Chain C, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726412|pdb|1LOJ|D Chain D, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726413|pdb|1LOJ|E Chain E, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726414|pdb|1LOJ|F Chain F, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726415|pdb|1LOJ|G Chain G, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726416|pdb|1LOJ|H Chain H, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726417|pdb|1LOJ|I Chain I, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726418|pdb|1LOJ|J Chain J, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726419|pdb|1LOJ|K Chain K, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726420|pdb|1LOJ|L Chain L, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726421|pdb|1LOJ|M Chain M, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
gi|29726422|pdb|1LOJ|N Chain N, Crystal Structure Of A Methanobacterial Sm-Like Archaeal
Protein (Smap1) Bound To Uridine-5'-Monophosphate (Ump)
Length = 87
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P + + + S + + +KGD+E G LK FD+++N+VL D E E +G +L +L
Sbjct: 14 PLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELE---DGEVTRRLGTVL 70
Query: 70 LNGNNIAILVPG 81
+ G+NI + G
Sbjct: 71 IRGDNIVYISRG 82
>gi|268323608|emb|CBH37196.1| putative snRNP Sm-like protein [uncultured archaeon]
Length = 102
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 51/84 (60%), Gaps = 6/84 (7%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK- 64
++L P +++++ + S + V ++G +E GTL+G+D+++N+VL D E +G I K
Sbjct: 6 TKLKPLDVLNKSLRSPVIVRIRGAREFRGTLEGYDLHMNLVLSDAEEL----DGDAIVKE 61
Query: 65 -LDQILLNGNNIAILVPGGSPDPE 87
+ +IL+ G+N+ + P D E
Sbjct: 62 LMGEILVRGDNVVYISPTVKKDAE 85
>gi|385805901|ref|YP_005842299.1| putative snRNP Sm protein [Fervidicoccus fontis Kam940]
gi|383795764|gb|AFH42847.1| putative snRNP Sm protein [Fervidicoccus fontis Kam940]
Length = 76
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 3/70 (4%)
Query: 12 ELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLN 71
+++ +G + V +KG+KE+ G LK +D ++N+VLED E + R KL +++
Sbjct: 7 KILSSSMGQTVLVKLKGNKEVRGKLKSYDHHLNIVLEDAEELFPDGQAR---KLGTVIIR 63
Query: 72 GNNIAILVPG 81
G+N+ I+ P
Sbjct: 64 GDNVIIISPA 73
>gi|327401554|ref|YP_004342393.1| Sm ribonucleoprotein-like protein [Archaeoglobus veneficus SNP6]
gi|327317062|gb|AEA47678.1| Like-Sm ribonucleoprotein core [Archaeoglobus veneficus SNP6]
Length = 74
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 46/74 (62%), Gaps = 4/74 (5%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDK-ELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLD 66
+LP++++ +G I V MKG++ +LVG L+ D Y+N+ + + EY+ G ++ L
Sbjct: 1 MLPNQMVRSLVGKTIRVEMKGEESDLVGRLESVDDYMNIYMSNAVEYK---NGEKLRNLG 57
Query: 67 QILLNGNNIAILVP 80
++L GNN+ ++ P
Sbjct: 58 NLVLRGNNVILIQP 71
>gi|29726339|pdb|1JBM|A Chain A, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726340|pdb|1JBM|B Chain B, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726341|pdb|1JBM|C Chain C, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726342|pdb|1JBM|D Chain D, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726343|pdb|1JBM|E Chain E, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726344|pdb|1JBM|F Chain F, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
gi|29726345|pdb|1JBM|G Chain G, Heptameric Crystal Structure Of Mth649, An Sm-Like
Archaeal Protein From Methanobacterium
Thermautotrophicum
Length = 86
Score = 47.4 bits (111), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P + + + S + + +KGD+E G LK FD+++N+VL D E E +G +L +L
Sbjct: 14 PLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELE---DGEVTRRLGTVL 70
Query: 70 LNGNNIAILVPG 81
+ G+NI + G
Sbjct: 71 IRGDNIVYISRG 82
>gi|414875727|tpg|DAA52858.1| TPA: hypothetical protein ZEAMMB73_852117, partial [Zea mays]
Length = 177
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 13 LIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQI 68
LI R + SK IW+ + D + G + GFD Y+N+VLED E + R+ L +I
Sbjct: 105 LIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEINVKKNTRKT--LGRI 162
Query: 69 LLNGNNIAILVPGG 82
LL G+NI +++ G
Sbjct: 163 LLKGDNITLMMNSG 176
>gi|402467336|gb|EJW02651.1| hypothetical protein EDEG_02948 [Edhazardia aedis USNM 41457]
Length = 78
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 44/70 (62%), Gaps = 3/70 (4%)
Query: 9 LPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQI 68
LP E++ I +I +IM+ DK G L+ FD +VN+ +E+V YEI +G R+ +
Sbjct: 6 LPLEILKNNINKEIRLIMRKDKVFSGVLRTFDEHVNIFMENV--YEILDDGSRM-HIGST 62
Query: 69 LLNGNNIAIL 78
++NG N+A++
Sbjct: 63 IINGGNVAMI 72
>gi|449457115|ref|XP_004146294.1| PREDICTED: small nuclear ribonucleoprotein E-like isoform 1
[Cucumis sativus]
Length = 88
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + SK IW+ + D + G + GFD Y+N+VL+D E + + ++ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKK--AL 70
Query: 66 DQILLNGNNIAILVPGGS 83
+ILL G+NI +++ G
Sbjct: 71 GRILLKGDNITLMMNSGK 88
>gi|20150503|pdb|1JRI|A Chain A, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150504|pdb|1JRI|B Chain B, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150505|pdb|1JRI|C Chain C, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150506|pdb|1JRI|D Chain D, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150507|pdb|1JRI|E Chain E, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150508|pdb|1JRI|F Chain F, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150509|pdb|1JRI|G Chain G, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150510|pdb|1JRI|H Chain H, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150511|pdb|1JRI|I Chain I, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150512|pdb|1JRI|J Chain J, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150513|pdb|1JRI|K Chain K, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150514|pdb|1JRI|L Chain L, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150515|pdb|1JRI|M Chain M, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit.
gi|20150516|pdb|1JRI|N Chain N, The Crystal Structure Of An Sm-Like Archaeal Protein
With Two Heptamers In The Asymmetric Unit
Length = 85
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P + + + S + + +KGD+E G LK FD+++N+VL D E E +G +L +L
Sbjct: 14 PLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELE---DGEVTRRLGTVL 70
Query: 70 LNGNNIAILVPG 81
+ G+NI + G
Sbjct: 71 IRGDNIVYISRG 82
>gi|282164085|ref|YP_003356470.1| putative small nucleolar RNP Sm protein [Methanocella paludicola
SANAE]
gi|282156399|dbj|BAI61487.1| putative small nucleolar RNP Sm protein [Methanocella paludicola
SANAE]
Length = 74
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELV-GTLKGFDVYVNMVLEDVTEYEITAEGRRITKLD 66
+ P++ + +G KI V MKG+K ++ GTL D Y+N+ + D TE + G+++ L
Sbjct: 1 MFPNKKVQALVGQKIQVEMKGEKNILEGTLVSADDYLNLHMVDTTEIQ---GGQKLRTLG 57
Query: 67 QILLNGNNIAILVP 80
++L GNNI +L P
Sbjct: 58 SVVLRGNNIILLNP 71
>gi|242051601|ref|XP_002454946.1| hypothetical protein SORBIDRAFT_03g001950 [Sorghum bicolor]
gi|241926921|gb|EES00066.1| hypothetical protein SORBIDRAFT_03g001950 [Sorghum bicolor]
Length = 88
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + SK IW+ + D + G + GFD Y+N+VL+D E + R+ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEINVKKNTRK--SL 70
Query: 66 DQILLNGNNIAILVPGGS 83
+ILL G+NI +++ G
Sbjct: 71 GRILLKGDNITLMMNTGK 88
>gi|13541906|ref|NP_111594.1| small nuclear ribonucleoprotein (snRNP)-like protein
[Thermoplasma volcanium GSS1]
gi|14325338|dbj|BAB60242.1| small nuclear ribonucleoprotein [Thermoplasma volcanium GSS1]
Length = 71
Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 45/73 (61%), Gaps = 4/73 (5%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQ 67
++P +L++ + ++ +++K ++ L GTL G+D Y+NMVL+DV E KL
Sbjct: 2 IMPMKLLEESVNKRVSLLLKDNRVLEGTLTGYDDYMNMVLDDVDENSENVS----RKLGT 57
Query: 68 ILLNGNNIAILVP 80
+++ G+N+ +VP
Sbjct: 58 VVIRGSNVVRIVP 70
>gi|255563612|ref|XP_002522808.1| Small nuclear ribonucleoprotein E, putative [Ricinus communis]
gi|223538046|gb|EEF39659.1| Small nuclear ribonucleoprotein E, putative [Ricinus communis]
Length = 88
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + SK W+ + D + G + GFD Y+N+VL+D E + + R+ L
Sbjct: 13 PINLIFRFLQSKARIQFWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKT--L 70
Query: 66 DQILLNGNNIAILVPGGS 83
+ILL G+NI +++ G
Sbjct: 71 GRILLKGDNITLMMNTGK 88
>gi|73670936|ref|YP_306951.1| small nuclear ribonucleoprotein [Methanosarcina barkeri str.
Fusaro]
gi|121724584|sp|Q465S1.1|RUXX_METBF RecName: Full=Putative snRNP Sm-like protein
gi|72398098|gb|AAZ72371.1| Small nuclear ribonucleoprotein, LSM family [Methanosarcina
barkeri str. Fusaro]
Length = 72
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++++ + + + V +KG +E G LKG+D+++N+VL++ E EG ++K ++
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELR---EGEVVSKFGSVV 61
Query: 70 LNGNNIAILVP 80
+ G+N+ + P
Sbjct: 62 IRGDNVVYVSP 72
>gi|14324575|dbj|BAB59502.1| small nuclear ribonucleoprotein [Thermoplasma volcanium GSS1]
Length = 87
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P +++ + + + +KG++E G L+G+DVY+N+VL++ +E I E + + D+IL
Sbjct: 14 PMDVLKNALSRNVLIDVKGNREYSGILEGYDVYMNVVLQNASEI-INGENKGV--FDRIL 70
Query: 70 LNGNNIAILVP 80
+ G+N+ + P
Sbjct: 71 VRGDNVIFVSP 81
>gi|435851698|ref|YP_007313284.1| small nuclear ribonucleoprotein [Methanomethylovorans hollandica
DSM 15978]
gi|433662328|gb|AGB49754.1| small nuclear ribonucleoprotein [Methanomethylovorans hollandica
DSM 15978]
Length = 74
Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELV-GTLKGFDVYVNMVLEDVTEYEITAEGRRITKLD 66
+ P++ + + +GS++ V MKGD L+ G L D Y+N+ L D E + G ++ L
Sbjct: 1 MFPNKRVHKLVGSRVQVEMKGDLHLLEGLLNSADDYLNLHLLDTVE---ISNGEKLRSLG 57
Query: 67 QILLNGNNIAILVPG 81
++L GNNI ++ P
Sbjct: 58 SVVLRGNNIILITPA 72
>gi|410671979|ref|YP_006924350.1| Small nuclear ribonucleoprotein, LSM family [Methanolobus
psychrophilus R15]
gi|409171107|gb|AFV24982.1| Small nuclear ribonucleoprotein, LSM family [Methanolobus
psychrophilus R15]
Length = 72
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++++ + + + V +KG +E G L+G+DV++N+VL++ E + EG + KL ++
Sbjct: 5 PLDILNNALNTPVIVRLKGAREFRGKLQGYDVHMNLVLDEAEELK---EGDIVRKLGSVV 61
Query: 70 LNGNNIAILVP 80
+ G+NI + P
Sbjct: 62 IRGDNIVYVSP 72
>gi|383320207|ref|YP_005381048.1| Small nuclear ribonucleoprotein, LSM family [Methanocella
conradii HZ254]
gi|379321577|gb|AFD00530.1| Small nuclear ribonucleoprotein, LSM family [Methanocella
conradii HZ254]
Length = 74
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 4/74 (5%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELV-GTLKGFDVYVNMVLEDVTEYEITAEGRRITKLD 66
+ P++ + IG KI V MKG+K ++ GTL D Y+N+ L D E + G+++ L
Sbjct: 1 MFPNKKVQSLIGQKIQVEMKGEKNILEGTLVSADDYLNLHLVDTAEIQ---GGQKLRTLG 57
Query: 67 QILLNGNNIAILVP 80
++L GNNI +L P
Sbjct: 58 SVVLRGNNIILLNP 71
>gi|357455361|ref|XP_003597961.1| Small nuclear ribonucleoprotein E [Medicago truncatula]
gi|357491039|ref|XP_003615807.1| Small nuclear ribonucleoprotein E [Medicago truncatula]
gi|355487009|gb|AES68212.1| Small nuclear ribonucleoprotein E [Medicago truncatula]
gi|355517142|gb|AES98765.1| Small nuclear ribonucleoprotein E [Medicago truncatula]
gi|388498322|gb|AFK37227.1| unknown [Medicago truncatula]
Length = 88
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + SK IW+ + D + G + GFD Y+N+VL+D E + + ++ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKT--L 70
Query: 66 DQILLNGNNIAILVPGGS 83
+ILL G+NI +++ G
Sbjct: 71 GRILLKGDNITLMMNTGK 88
>gi|13541187|ref|NP_110875.1| small nuclear ribonucleoprotein [Thermoplasma volcanium GSS1]
gi|20178114|sp|Q97BU5.2|RUXX_THEVO RecName: Full=Putative snRNP Sm-like protein
Length = 83
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P +++ + + + +KG++E G L+G+DVY+N+VL++ +E I E + + D+IL
Sbjct: 10 PMDVLKNALSRNVLIDVKGNREYSGILEGYDVYMNVVLQNASEI-INGENKGV--FDRIL 66
Query: 70 LNGNNIAILVP 80
+ G+N+ + P
Sbjct: 67 VRGDNVIFVSP 77
>gi|336477290|ref|YP_004616431.1| Sm ribonucleoprotein-like protein [Methanosalsum zhilinae DSM
4017]
gi|335930671|gb|AEH61212.1| Like-Sm ribonucleoprotein core [Methanosalsum zhilinae DSM 4017]
Length = 72
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++++ + + + V +KG +E G L+G+DV++N+VL++ E + +G + KL ++
Sbjct: 5 PLDILNNALNTPVIVRLKGAREFRGELQGYDVHMNLVLDNAEELK---DGEIVRKLGSVV 61
Query: 70 LNGNNIAILVP 80
+ G+N+ L P
Sbjct: 62 IRGDNVVYLSP 72
>gi|115443949|ref|NP_001045754.1| Os02g0126700 [Oryza sativa Japonica Group]
gi|41053075|dbj|BAD08019.1| putative small nuclear ribonucleoprotein polypeptide E [Oryza
sativa Japonica Group]
gi|113535285|dbj|BAF07668.1| Os02g0126700 [Oryza sativa Japonica Group]
gi|215686543|dbj|BAG88796.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218189970|gb|EEC72397.1| hypothetical protein OsI_05681 [Oryza sativa Indica Group]
gi|222622094|gb|EEE56226.1| hypothetical protein OsJ_05214 [Oryza sativa Japonica Group]
Length = 88
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + SK IW+ + D + G + GFD Y+N+VL++ E I + R+ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEINIKKDTRK--SL 70
Query: 66 DQILLNGNNIAILVPGGS 83
+ILL G+NI +++ G
Sbjct: 71 GRILLKGDNITLMMNTGK 88
>gi|48477742|ref|YP_023448.1| small nuclear ribonucleoprotein [Picrophilus torridus DSM 9790]
gi|48430390|gb|AAT43255.1| snRNP Sm-like protein [Picrophilus torridus DSM 9790]
Length = 82
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 3/74 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P +++ + I V +KG++ GTL+G+D+Y+N+VL +V+E T G +++L
Sbjct: 11 PMDVLKNSLEKNIMVDVKGNRTYSGTLEGYDIYMNVVLSNVSE---TINGENKGVFEKML 67
Query: 70 LNGNNIAILVPGGS 83
+ G+NI + P S
Sbjct: 68 VRGDNIIFVSPSRS 81
>gi|15224217|ref|NP_179464.1| putative small nuclear ribonucleoprotein [Arabidopsis thaliana]
gi|297836770|ref|XP_002886267.1| hypothetical protein ARALYDRAFT_900374 [Arabidopsis lyrata subsp.
lyrata]
gi|4185140|gb|AAD08943.1| putative small nuclear ribonucleoprotein E [Arabidopsis thaliana]
gi|21592486|gb|AAM64436.1| putative small nuclear ribonucleoprotein E [Arabidopsis thaliana]
gi|26452632|dbj|BAC43399.1| putative small nuclear ribonucleoprotein E [Arabidopsis thaliana]
gi|28973515|gb|AAO64082.1| putative small nuclear ribonucleoprotein E [Arabidopsis thaliana]
gi|297332107|gb|EFH62526.1| hypothetical protein ARALYDRAFT_900374 [Arabidopsis lyrata subsp.
lyrata]
gi|330251706|gb|AEC06800.1| putative small nuclear ribonucleoprotein [Arabidopsis thaliana]
Length = 88
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + SK IW+ + D + G + GFD Y+N+VL++ E I R+ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKKNTRK--PL 70
Query: 66 DQILLNGNNIAILVPGGS 83
+ILL G+NI +++ G
Sbjct: 71 GRILLKGDNITLMMNTGK 88
>gi|168008828|ref|XP_001757108.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691606|gb|EDQ77967.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 87
Score = 46.6 bits (109), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + SK IW+ + D + G + GFD Y+N+VLE+ E + R+ L
Sbjct: 12 PINLIFRFLQSKSRIQIWLFEQKDMRIEGRIIGFDEYMNLVLEEAEEVSLKKNTRK--PL 69
Query: 66 DQILLNGNNIAILVPGGS 83
+ILL G+NI +++ G
Sbjct: 70 GRILLKGDNITLMMNTGK 87
>gi|11498481|ref|NP_069709.1| small nuclear ribonucleoprotein [Archaeoglobus fulgidus DSM 4304]
gi|6094214|sp|O29386.1|RUXX_ARCFU RecName: Full=Putative snRNP Sm-like protein
gi|15826634|pdb|1I5L|A Chain A, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826635|pdb|1I5L|B Chain B, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826636|pdb|1I5L|C Chain C, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826637|pdb|1I5L|D Chain D, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826638|pdb|1I5L|E Chain E, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826639|pdb|1I5L|F Chain F, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826640|pdb|1I5L|G Chain G, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826641|pdb|1I5L|H Chain H, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826642|pdb|1I5L|I Chain I, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826643|pdb|1I5L|J Chain J, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826644|pdb|1I5L|K Chain K, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826645|pdb|1I5L|L Chain L, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826646|pdb|1I5L|M Chain M, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826647|pdb|1I5L|N Chain N, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus Complexed With Short Poly-U Rna
gi|15826691|pdb|1I4K|A Chain A, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826692|pdb|1I4K|B Chain B, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826693|pdb|1I4K|C Chain C, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826694|pdb|1I4K|D Chain D, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826695|pdb|1I4K|E Chain E, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826696|pdb|1I4K|F Chain F, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826697|pdb|1I4K|G Chain G, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826698|pdb|1I4K|H Chain H, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826699|pdb|1I4K|I Chain I, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826700|pdb|1I4K|J Chain J, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826701|pdb|1I4K|K Chain K, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826702|pdb|1I4K|L Chain L, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826703|pdb|1I4K|M Chain M, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826704|pdb|1I4K|N Chain N, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826705|pdb|1I4K|O Chain O, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826706|pdb|1I4K|P Chain P, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826707|pdb|1I4K|Q Chain Q, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826708|pdb|1I4K|R Chain R, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826709|pdb|1I4K|S Chain S, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826710|pdb|1I4K|T Chain T, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826711|pdb|1I4K|U Chain U, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826712|pdb|1I4K|V Chain V, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826713|pdb|1I4K|W Chain W, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826714|pdb|1I4K|X Chain X, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826715|pdb|1I4K|Y Chain Y, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826716|pdb|1I4K|Z Chain Z, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826717|pdb|1I4K|1 Chain 1, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|15826718|pdb|1I4K|2 Chain 2, Crystal Structure Of An Sm-Like Protein (Af-Sm1) From
Archaeoglobus Fulgidus At 2.5a Resolution
gi|2649736|gb|AAB90374.1| snRNP, putative [Archaeoglobus fulgidus DSM 4304]
Length = 77
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++++R + S + V +KG +E GTL G+D+++N+VL D E + G + K+ ++
Sbjct: 5 PLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQ---NGEVVRKVGSVV 61
Query: 70 LNGNNIAILVP 80
+ G+ + + P
Sbjct: 62 IRGDTVVFVSP 72
>gi|363748558|ref|XP_003644497.1| hypothetical protein Ecym_1454 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888129|gb|AET37680.1| hypothetical protein Ecym_1454 [Eremothecium cymbalariae
DBVPG#7215]
Length = 76
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + K+++ + G +++VG L+G+DV++N+VL+D E+ GR+ D ++ GN
Sbjct: 7 LKKYMERKLFIQLNGSRKVVGVLRGYDVFLNVVLDDAL--EVHKNGRKFPLGDHTVIRGN 64
Query: 74 NIAILVP 80
+I L P
Sbjct: 65 SIVSLEP 71
>gi|116779305|gb|ABK21228.1| unknown [Picea sitchensis]
Length = 88
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/78 (37%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + SK IW+ + D + G + GFD Y+N+VLED EI+ + + L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAE--EISVKRKTHKPL 70
Query: 66 DQILLNGNNIAILVPGGS 83
+ILL G+NI +++ G
Sbjct: 71 GRILLKGDNITLMMNTGK 88
>gi|20092011|ref|NP_618086.1| small nuclear ribonucleoprotein [Methanosarcina acetivorans C2A]
gi|30173335|sp|Q8TL47.1|RUXX_METAC RecName: Full=Putative snRNP Sm-like protein
gi|19917220|gb|AAM06566.1| Sm protein [Methanosarcina acetivorans C2A]
Length = 72
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++++ + + + V +KG +E G LKG+D+++N+VL++ E +G ++K ++
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELR---DGEVVSKFSSVV 61
Query: 70 LNGNNIAILVP 80
+ G+N+ + P
Sbjct: 62 IRGDNVVYVSP 72
>gi|449019835|dbj|BAM83237.1| U6 snRNA-associated Sm-like protein LSm3 [Cyanidioschyzon merolae
strain 10D]
Length = 102
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 14/83 (16%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE-----------YE-ITA 57
P EL+ + +++V +KGD+ELVGTL +D ++N+++ D E YE I
Sbjct: 13 PVELLRIALDERVFVKLKGDRELVGTLHAYDQHLNLIISDAEETLQKAELDEETYEQIVR 72
Query: 58 EGRRITKLDQILLNGNNIAILVP 80
+ RR KL + + G+ + ++ P
Sbjct: 73 QERR--KLQLVYVRGDTVFLVSP 93
>gi|256077883|ref|XP_002575229.1| small nuclear ribonucleoprotein G (snrnp-G) [Schistosoma mansoni]
gi|353231785|emb|CCD79140.1| putative small nuclear ribonucleoprotein G (snrnp-G) [Schistosoma
mansoni]
Length = 76
Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 47/77 (61%), Gaps = 10/77 (12%)
Query: 2 AHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRR 61
AH P + + + ++ + + ++E+VG L+GFD ++N+V+ D YE+T +G +
Sbjct: 4 AHQPE-------LKKYLDKRLRLKLNANREVVGVLRGFDAFMNIVVSDA--YEVTKDGNQ 54
Query: 62 ITKLDQILLNGNNIAIL 78
I K+D ++ GN+I I+
Sbjct: 55 I-KIDMAVVRGNSINIV 70
>gi|255581898|ref|XP_002531748.1| Small nuclear ribonucleoprotein E, putative [Ricinus communis]
gi|223528618|gb|EEF30637.1| Small nuclear ribonucleoprotein E, putative [Ricinus communis]
Length = 86
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + SK IW+ + D + G + GFD Y+N+VL+D E + + R+ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKTRKT--L 70
Query: 66 DQILLNGNNIAILV 79
+ILL G+NI +++
Sbjct: 71 GRILLKGDNITLMM 84
>gi|255629853|gb|ACU15277.1| unknown [Glycine max]
Length = 88
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + K IW+ + D + G + GFD Y+N+VL+D E + + R+ L
Sbjct: 13 PINLIFRFLQGKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKT--L 70
Query: 66 DQILLNGNNIAILVPGGS 83
+ILL G+NI +++ G
Sbjct: 71 GRILLKGDNITLMMNTGK 88
>gi|320170227|gb|EFW47126.1| hypothetical protein CAOG_05070 [Capsaspora owczarzaki ATCC
30864]
Length = 95
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE-GRRITKLDQILLNG 72
++ + SK+ V + VGTL+GFD N++LE E E A+ G I L ++ G
Sbjct: 4 LEELLQSKVLVATTDGRIFVGTLRGFDQMCNIILEHTVEREFNAQRGVVIVALGLYIIKG 63
Query: 73 NNIAILVPGGSPDPE 87
NIA++ GS DPE
Sbjct: 64 ENIAVV---GSVDPE 75
>gi|193848588|gb|ACF22772.1| small nuclear ribonucleoprotein E [Brachypodium distachyon]
Length = 79
Score = 45.8 bits (107), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
MA Q + ++ I I +IW+ + D + G + GFD Y+N+VLED E + R
Sbjct: 1 MASTKVQRIMTQPIKARI--QIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEINVKKNTR 58
Query: 61 RITKLDQILLNGNNIAILVPGGS 83
+ L +ILL G+NI +++ G
Sbjct: 59 K--SLGRILLKGDNITLMMNTGK 79
>gi|7269933|emb|CAB81026.1| small nuclear ribonucleoprotein homolog [Arabidopsis thaliana]
Length = 86
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + SK IW+ + D + G + GFD Y+N+VL++ E I + R+ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKKKTRK--PL 70
Query: 66 DQILLNGNNIAILV 79
+ILL G+NI +++
Sbjct: 71 GRILLKGDNITLMM 84
>gi|344231234|gb|EGV63116.1| LSM-domain-containing protein [Candida tenuis ATCC 10573]
Length = 88
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 43/74 (58%), Gaps = 4/74 (5%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR---RITKLD 66
P +LI + + V ++G +E+ G L+G+D + NMVL D TEY I AE + + D
Sbjct: 13 PLDLIRYQLDETVLVKLRGAREMKGKLQGYDSHCNMVLSDATEY-IYAENQDKPQGKSTD 71
Query: 67 QILLNGNNIAILVP 80
+ + G+++ ++ P
Sbjct: 72 MVFIRGDSVILISP 85
>gi|343427129|emb|CBQ70657.1| probable LSM3-U6 snRNA-associated Sm-like protein [Sporisorium
reilianum SRZ2]
Length = 113
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY--------EITAEGRR 61
P +LI I +++V ++GD+EL GTL +D ++N++L DV E E AE R
Sbjct: 29 PFDLIRLSISERVYVKLRGDRELRGTLHAYDGHMNLILGDVEETIYVVDINEETGAETVR 88
Query: 62 ITKL--DQILLNGNNIAILVPGGS 83
+ K + + + G+++ ++ P S
Sbjct: 89 VVKRQSEMLFVRGDSVILVSPPSS 112
>gi|341881025|gb|EGT36960.1| hypothetical protein CAEBREN_23318 [Caenorhabditis brenneri]
Length = 102
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 14/83 (16%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY------------EITA 57
P +L+ + K++V M+ D+EL G L+ FD ++NMVL DV E EI
Sbjct: 17 PLDLLRLSLDEKVYVKMRNDRELRGRLRAFDQHLNMVLSDVEETITTREVDEDTFEEIYR 76
Query: 58 EGRRITKLDQILLNGNNIAILVP 80
+ +R+ + + + G+++ ++ P
Sbjct: 77 QSKRVVPM--LFVRGDSVILVSP 97
>gi|255710607|ref|XP_002551587.1| KLTH0A02970p [Lachancea thermotolerans]
gi|238932964|emb|CAR21145.1| KLTH0A02970p [Lachancea thermotolerans CBS 6340]
Length = 76
Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + K+++ + G ++LVG L+GFD+++N+VL+D E+ +G + Q ++ GN
Sbjct: 7 LKKYMDKKVYIQLNGSRKLVGVLRGFDIFLNVVLDDAV--EVRKDGTKFAMGSQSVVRGN 64
Query: 74 NIAIL 78
+I L
Sbjct: 65 SIVSL 69
>gi|225455956|ref|XP_002278114.1| PREDICTED: small nuclear ribonucleoprotein E [Vitis vinifera]
gi|297734216|emb|CBI15463.3| unnamed protein product [Vitis vinifera]
Length = 88
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + SK IW+ + D + G + GFD Y+N+VL+D E + ++ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKNTKKT--L 70
Query: 66 DQILLNGNNIAILVPGGS 83
+ILL G+NI +++ G
Sbjct: 71 GRILLKGDNITLMMNTGK 88
>gi|60692640|gb|AAX30638.1| SJCHGC06306 protein [Schistosoma japonicum]
gi|226485693|emb|CAX75266.1| putative small nuclear ribonucleoprotein G [Schistosoma
japonicum]
gi|226485695|emb|CAX75267.1| putative small nuclear ribonucleoprotein G [Schistosoma
japonicum]
gi|226485697|emb|CAX75268.1| putative small nuclear ribonucleoprotein G [Schistosoma
japonicum]
Length = 76
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 47/77 (61%), Gaps = 10/77 (12%)
Query: 2 AHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRR 61
AH P + + + ++ + + ++E+VG L+GFD ++N+V+ D YE+T +G +
Sbjct: 4 AHQPE-------LKKYLDKRLRLKLNANREVVGILRGFDAFMNIVVSDA--YEVTKDGTQ 54
Query: 62 ITKLDQILLNGNNIAIL 78
I K+D ++ GN+I I+
Sbjct: 55 I-KIDMAVVRGNSINIV 70
>gi|288932200|ref|YP_003436260.1| Like-Sm ribonucleoprotein core [Ferroglobus placidus DSM 10642]
gi|288894448|gb|ADC65985.1| Like-Sm ribonucleoprotein core [Ferroglobus placidus DSM 10642]
Length = 73
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P +++++ + + + V +KG +E GTL G+D+++N+VL D E + G + KL ++
Sbjct: 4 PLDVLNKALKTPVLVRLKGGREFRGTLDGYDIHMNLVLVDAEEIQ---NGEVVRKLGSVV 60
Query: 70 LNGNNIAILVP 80
+ G+ + + P
Sbjct: 61 IRGDTVVFVSP 71
>gi|393246263|gb|EJD53772.1| LSM-domain-containing protein [Auricularia delicata TFB-10046
SS5]
Length = 100
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 45/74 (60%), Gaps = 3/74 (4%)
Query: 5 PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK 64
PSQ + + + K++V ++G +++ GTL+GFD+++N+VL+D + + A+
Sbjct: 23 PSQKSDEQGFAQFMDKKLFVHIQGGRKVSGTLRGFDIFLNLVLDDAQDESVPAQK---AP 79
Query: 65 LDQILLNGNNIAIL 78
L +++ GN++ +
Sbjct: 80 LGTVVIRGNSVTSM 93
>gi|449017577|dbj|BAM80979.1| Sm protein E [Cyanidioschyzon merolae strain 10D]
Length = 105
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 5 PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY--EITAEGRRI 62
P QLL + L + ++W+ L GTL+GFD + N+VL D E RR
Sbjct: 12 PEQLLAT-LARQQARVEVWLFENTRYSLEGTLRGFDEHTNLVLVDTVEQWGSTAKHKRRT 70
Query: 63 TKLDQILLNGNNIAILVPGGSP 84
L ILL G N+ ++ G P
Sbjct: 71 VALGTILLKGENVVLVRSLGMP 92
>gi|449016467|dbj|BAM79869.1| Sm protein E [Cyanidioschyzon merolae strain 10D]
Length = 105
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 5 PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY--EITAEGRRI 62
P QLL + L + ++W+ L GTL+GFD + N+VL D E RR
Sbjct: 12 PEQLLAT-LARQQARVEVWLFENTRYSLEGTLRGFDEHTNLVLVDTVEQWGSTAKHKRRT 70
Query: 63 TKLDQILLNGNNIAILVPGGSP 84
L ILL G N+ ++ G P
Sbjct: 71 VALGTILLKGENVVLVRSLGMP 92
>gi|217071220|gb|ACJ83970.1| unknown [Medicago truncatula]
gi|388520551|gb|AFK48337.1| unknown [Medicago truncatula]
Length = 88
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + SK IW+ + D + G + GFD Y+N+ L+D E + + ++ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLALDDAEEVNVKKKSKKT--L 70
Query: 66 DQILLNGNNIAILVPGGS 83
+ILL G+NI +++ G
Sbjct: 71 GRILLKGDNITLMMNTGK 88
>gi|332796496|ref|YP_004457996.1| Sm1 protein [Acidianus hospitalis W1]
gi|332694231|gb|AEE93698.1| archaeal Sm1 protein [Acidianus hospitalis W1]
Length = 76
Score = 45.4 bits (106), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
MA ++L L GS + V +KG+KE+ G LK +D ++N+VL D E + G+
Sbjct: 1 MAETAHKVLAESL-----GSLVLVKLKGNKEVRGLLKSYDQHMNLVLSDSEEIQSDGSGK 55
Query: 61 RITKLDQILLNGNNIAILVP 80
+I I++ G+N+ ++ P
Sbjct: 56 KI---GTIVIRGDNVILISP 72
>gi|21730739|pdb|1LJO|A Chain A, Crystal Structure Of An Sm-Like Protein (Af-Sm2) From
Archaeoglobus Fulgidus At 1.95a Resolution
Length = 77
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDK-ELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK 64
+ +LP++++ +G I V MKG++ +LVG L+G D Y+N+ L + E ++
Sbjct: 2 AMVLPNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAME---CKGEEKVRS 58
Query: 65 LDQILLNGNNIAILVP 80
L +I+L GNN+ ++ P
Sbjct: 59 LGEIVLRGNNVVLIQP 74
>gi|195615352|gb|ACG29506.1| small nuclear ribonucleoprotein E [Zea mays]
Length = 88
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + SK IW+ + D + G + GFD Y+N+VLED E + + L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLEDAEEINVKKNTPKT--L 70
Query: 66 DQILLNGNNIAILVPGGS 83
+ILL G+NI +++ G
Sbjct: 71 GRILLKGDNITLMMNSGK 88
>gi|15920992|ref|NP_376661.1| small nuclear ribonucleoprotein [Sulfolobus tokodaii str. 7]
gi|342306290|dbj|BAK54379.1| archaeal Sm protein [Sulfolobus tokodaii str. 7]
Length = 79
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 46/69 (66%), Gaps = 3/69 (4%)
Query: 12 ELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLN 71
+++ +GS + V +KGDK + GTLK +D+++N+VLE+ E+ ++G K+ I++
Sbjct: 11 KVLAESLGSTVLVKLKGDKIVRGTLKSYDMHMNLVLEN--SEEVMSDG-STRKVGTIIIR 67
Query: 72 GNNIAILVP 80
G+N+ ++ P
Sbjct: 68 GDNVILVSP 76
>gi|449457117|ref|XP_004146295.1| PREDICTED: small nuclear ribonucleoprotein E-like isoform 2
[Cucumis sativus]
Length = 86
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + SK IW+ + D + G + GFD Y+N+VL+D E + + ++ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKK--AL 70
Query: 66 DQILLNGNNIAILV 79
+ILL G+NI +++
Sbjct: 71 GRILLKGDNITLMM 84
>gi|449018855|dbj|BAM82257.1| similar to Sm protein E [Cyanidioschyzon merolae strain 10D]
Length = 181
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 5 PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY--EITAEGRRI 62
P QLL + L + ++W+ L GTL+GFD + N+VL D E RR
Sbjct: 12 PEQLLAT-LARQQARVEVWLFENTRYSLEGTLRGFDEHTNLVLVDTVEQWGSTAKHKRRT 70
Query: 63 TKLDQILLNGNNIAILVPGGSP 84
L ILL G N+ ++ G P
Sbjct: 71 VALGTILLKGENVVLVRSLGMP 92
>gi|168027770|ref|XP_001766402.1| predicted protein [Physcomitrella patens subsp. patens]
gi|168048491|ref|XP_001776700.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671992|gb|EDQ58536.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162682311|gb|EDQ68730.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 87
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + SK IW+ + D + G + GFD Y+N+VL++ E + + R+ L
Sbjct: 12 PINLIFRFLQSKSRIQIWLFEQKDLRIEGRIIGFDEYMNLVLDEAEEVSLKKKTRK--PL 69
Query: 66 DQILLNGNNIAILVPGGS 83
+ILL G+NI +++ G
Sbjct: 70 GRILLKGDNITLMMNTGK 87
>gi|400602043|gb|EJP69668.1| LSM domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 83
Score = 45.1 bits (105), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + +++V + G ++++G L+G+DV++N+VL+D E EG T+L +++ GN
Sbjct: 8 LKKYLDKRLFVQLNGSRKVIGVLRGYDVFLNIVLDDAFE---ETEGGNKTRLGMVVIRGN 64
Query: 74 NIAIL 78
++ +L
Sbjct: 65 SVVML 69
>gi|340897533|gb|EGS17123.1| putative small nuclear ribonucleoprotein [Chaetomium thermophilum
var. thermophilum DSM 1495]
Length = 82
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 40/67 (59%), Gaps = 3/67 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + +++V + G + ++G L+G+DV++N+VL+D E E KL + + GN
Sbjct: 8 LKKYLDKRLFVELNGSRRVIGVLRGYDVFLNIVLDDAVEERPNGEK---VKLGMVTIRGN 64
Query: 74 NIAILVP 80
++ IL P
Sbjct: 65 SVVILEP 71
>gi|126647281|ref|XP_001388059.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
gi|126117147|gb|EAZ51247.1| small nuclear ribonucleoprotein, putative [Cryptosporidium parvum
Iowa II]
Length = 92
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
+IW+ + L G ++GFD Y+N+VL+ +E E RR T + Q+LL G NI+++
Sbjct: 31 QIWLYDHKNLVLEGVIQGFDEYMNIVLDQASEVYTKKEVRRETSVGQLLLRGENISLI 88
>gi|219851061|ref|YP_002465493.1| Sm ribonucleoprotein-like protein [Methanosphaerula palustris
E1-9c]
gi|219545320|gb|ACL15770.1| Like-Sm ribonucleoprotein core [Methanosphaerula palustris E1-9c]
Length = 75
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 46/75 (61%), Gaps = 5/75 (6%)
Query: 10 PSELIDRCI-GSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQI 68
P +++D+ + G + V +KGD+EL G L+G+DV++N+VL+ E A K+ +
Sbjct: 5 PLDILDQVLNGEPVIVSLKGDRELRGVLQGYDVHMNLVLDKAEEVTDGA----TQKIGTL 60
Query: 69 LLNGNNIAILVPGGS 83
++ G+N+ + P G+
Sbjct: 61 IVRGDNVIYISPSGN 75
>gi|125560150|gb|EAZ05598.1| hypothetical protein OsI_27814 [Oryza sativa Indica Group]
gi|125560167|gb|EAZ05615.1| hypothetical protein OsI_27832 [Oryza sativa Indica Group]
gi|222639919|gb|EEE68051.1| hypothetical protein OsJ_26051 [Oryza sativa Japonica Group]
Length = 79
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 4/83 (4%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
MA Q + ++ I I +IW+ + D + G + GFD Y+N+VL+D E + + R
Sbjct: 1 MASTKVQRIMTQPIKARI--QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEINVKKDTR 58
Query: 61 RITKLDQILLNGNNIAILVPGGS 83
+ L +ILL G+NI +++ G
Sbjct: 59 K--SLGRILLKGDNITLMMNTGK 79
>gi|358253136|dbj|GAA52245.1| small nuclear ribonucleoprotein G [Clonorchis sinensis]
Length = 75
Score = 45.1 bits (105), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 42/56 (75%), Gaps = 3/56 (5%)
Query: 23 WVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
++ + G++E++GTL+GFD ++N+V+ D EIT +G+++ ++D ++ GN+I I+
Sbjct: 17 FIKLNGNREVIGTLRGFDAFMNIVINDA--MEITKDGQQL-RIDMAVIRGNSINIV 69
>gi|11497974|ref|NP_069198.1| snRNP [Archaeoglobus fulgidus DSM 4304]
gi|2650273|gb|AAB90874.1| snRNP, putative [Archaeoglobus fulgidus DSM 4304]
Length = 75
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 4/74 (5%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDK-ELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLD 66
+LP++++ +G I V MKG++ +LVG L+G D Y+N+ L + E ++ L
Sbjct: 2 VLPNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAME---CKGEEKVRSLG 58
Query: 67 QILLNGNNIAILVP 80
+I+L GNN+ ++ P
Sbjct: 59 EIVLRGNNVVLIQP 72
>gi|383320750|ref|YP_005381591.1| Small nuclear ribonucleoprotein, LSM family [Methanocella
conradii HZ254]
gi|379322120|gb|AFD01073.1| Small nuclear ribonucleoprotein, LSM family [Methanocella
conradii HZ254]
Length = 72
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++++ + S + V +KG +E G L+G+D+++N+VLE+ E + E R KL I+
Sbjct: 5 PLDVLNDALNSPVIVRLKGGREFRGELQGYDMHMNLVLENAEELKENEESR---KLGTII 61
Query: 70 LNGNNIAILVP 80
+ G+ + + P
Sbjct: 62 VRGDTVVYVSP 72
>gi|389631277|ref|XP_003713291.1| sm snRNP core protein Smg1 [Magnaporthe oryzae 70-15]
gi|351645624|gb|EHA53484.1| sm snRNP core protein Smg1 [Magnaporthe oryzae 70-15]
gi|440466674|gb|ELQ35928.1| sm snRNP core protein Smg1 [Magnaporthe oryzae Y34]
gi|440476979|gb|ELQ58129.1| sm snRNP core protein Smg1 [Magnaporthe oryzae P131]
Length = 88
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 43/69 (62%), Gaps = 3/69 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P + + + K++V + G +++VG ++G+DV++N+VLED E +G K+ ++
Sbjct: 4 PQPELKKYLDKKVFVQLNGSRKVVGVVRGYDVFLNIVLEDAFE---EKDGGEKVKIGTVV 60
Query: 70 LNGNNIAIL 78
+ GN++ +L
Sbjct: 61 IRGNSVVML 69
>gi|325183158|emb|CCA17616.1| U6 snRNAassociated Smlike protein LSm3 putative [Albugo laibachii
Nc14]
Length = 92
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 14/83 (16%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY------------EITA 57
P +L+ IG +I+V +GD+EL G L +D ++NMVL +V E EI
Sbjct: 7 PLDLVKLSIGERIYVKCRGDRELRGLLHAYDQHLNMVLSEVEETVTVQELDEETYEEIIK 66
Query: 58 EGRRITKLDQILLNGNNIAILVP 80
+ +R +++ + + G+ + ++ P
Sbjct: 67 QSKR--QVEMLFIRGDAVILVAP 87
>gi|156083891|ref|XP_001609429.1| small nuclear ribonucleoprotein E [Babesia bovis T2Bo]
gi|154796680|gb|EDO05861.1| small nuclear ribonucleoprotein E, putative [Babesia bovis]
Length = 89
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 38/61 (62%), Gaps = 2/61 (3%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVP 80
+IW+ + + ++ G ++GFD Y+NMVLEDV E + + RR L ILL G+ +A++
Sbjct: 30 QIWLYDQPNLKIEGKIRGFDEYMNMVLEDVEELYVKKQERR--ALGTILLKGDAMALITA 87
Query: 81 G 81
Sbjct: 88 A 88
>gi|126644035|ref|XP_001388176.1| hypothetical protein [Cryptosporidium parvum Iowa II]
gi|126117253|gb|EAZ51353.1| conserved hypothetical protein [Cryptosporidium parvum Iowa II]
Length = 139
Score = 44.7 bits (104), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQ----IL 69
+ + I +I V ++ D+ +VG L FD ++N+VL D EY +G +L + I+
Sbjct: 1 MQKYINYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDCQEYRRVKKGEESKELKRSLGLIM 60
Query: 70 LNGNNIAILVPGGSP 84
L G NI V P
Sbjct: 61 LRGENIVTFVAEAPP 75
>gi|320167518|gb|EFW44417.1| hypothetical protein CAOG_02442 [Capsaspora owczarzaki ATCC
30864]
Length = 106
Score = 44.3 bits (103), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 31/50 (62%)
Query: 9 LPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
+P +LI + +I V M+GD+EL G L +D ++NM+L DV E T E
Sbjct: 20 VPLDLIKLSLDERILVKMRGDRELRGRLHAYDQHLNMILSDVEETVTTVE 69
>gi|71005460|ref|XP_757396.1| hypothetical protein UM01249.1 [Ustilago maydis 521]
gi|46096383|gb|EAK81616.1| hypothetical protein UM01249.1 [Ustilago maydis 521]
Length = 110
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 47/84 (55%), Gaps = 10/84 (11%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY--------EITAEGRR 61
P +LI I +++V ++GD+EL GTL +D ++N++L DV E E +E R
Sbjct: 26 PFDLIRLSISERVYVKLRGDRELRGTLHAYDGHMNLILGDVEETIYVVDVNDESGSETVR 85
Query: 62 ITKL--DQILLNGNNIAILVPGGS 83
+ K + + + G+++ ++ P S
Sbjct: 86 VVKRQSEMLFVRGDSVILVSPPSS 109
>gi|298674160|ref|YP_003725910.1| Sm ribonucleoprotein-like protein [Methanohalobium evestigatum
Z-7303]
gi|298287148|gb|ADI73114.1| Like-Sm ribonucleoprotein core [Methanohalobium evestigatum
Z-7303]
Length = 72
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++++ + + + V ++G +E G L+G+DV++N+VL++ E +G + KL ++
Sbjct: 5 PLDILNNALNTPVIVRLRGSREFRGELQGYDVHMNLVLDNAEELN---DGEIVRKLGSVV 61
Query: 70 LNGNNIAILVP 80
+ G+N+ + P
Sbjct: 62 IRGDNVVYVSP 72
>gi|257076617|ref|ZP_05570978.1| snRNP Sm-like protein [Ferroplasma acidarmanus fer1]
Length = 71
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 42/68 (61%), Gaps = 5/68 (7%)
Query: 9 LPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQI 68
LP ++++ + K+ +++K ++ LVGTL G+D Y+NM L+D E G K+ ++
Sbjct: 4 LPMKMLEENLNKKVTLLLKDNRSLVGTLVGYDEYMNMTLDDAEE-----NGEVQRKIGKV 58
Query: 69 LLNGNNIA 76
++ G+N+
Sbjct: 59 IIRGSNVV 66
>gi|408404869|ref|YP_006862852.1| small nuclear ribonucleoprotein [Candidatus Nitrososphaera
gargensis Ga9.2]
gi|408365465|gb|AFU59195.1| putative small nuclear ribonucleoprotein [Candidatus
Nitrososphaera gargensis Ga9.2]
Length = 76
Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 12 ELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLN 71
+++D +G + + +KG K + G L GFD ++N++LED EI EG+ L I++
Sbjct: 8 KVLDESLGKVVLIKLKGGKVIRGNLHGFDQHMNLLLED--SVEILEEGKS-NDLGTIVVR 64
Query: 72 GNNIAILVP 80
G+N+ I+ P
Sbjct: 65 GDNVVIISP 73
>gi|302309857|ref|XP_002999588.1| hypothetical protein [Candida glabrata CBS 138]
gi|196049185|emb|CAR58061.1| unnamed protein product [Candida glabrata]
Length = 94
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 40/64 (62%), Gaps = 5/64 (7%)
Query: 22 IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE-GRRI----TKLDQILLNGNNIA 76
W+ + + GT++GFD ++N+V++D E I A+ GR + TKL +ILL G+NI
Sbjct: 29 FWLYEQVGIRIRGTIRGFDEFMNVVIDDAVEVPIEAKSGRELVDQGTKLGRILLKGDNIT 88
Query: 77 ILVP 80
++ P
Sbjct: 89 LITP 92
>gi|71012485|ref|XP_758502.1| hypothetical protein UM02355.1 [Ustilago maydis 521]
gi|46098160|gb|EAK83393.1| hypothetical protein UM02355.1 [Ustilago maydis 521]
Length = 175
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 12/92 (13%)
Query: 2 AHN-PSQLLPSEL--------IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
AHN S PSE + + + KI V G +E+ GTLKGFD +N+V+++VTE
Sbjct: 70 AHNSASSSAPSERPKKEAILDLSKYMDQKIRVKFAGGREVFGTLKGFDQLMNLVMDEVTE 129
Query: 53 YEITAEGR---RITKLDQILLNGNNIAILVPG 81
EG + L ++L G + ++ P
Sbjct: 130 SVRDEEGNVTDKTRNLGLVVLRGTALTVINPA 161
>gi|313227657|emb|CBY22804.1| unnamed protein product [Oikopleura dioica]
Length = 96
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%)
Query: 11 SELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILL 70
S ++D +G+K+ ++ + +VG LKG D VN+VL + E T EG L L+
Sbjct: 2 SAMLDALVGNKVEIVTNDGRVVVGILKGLDQVVNVVLANTEERVFTPEGVDRQALGLYLI 61
Query: 71 NGNNIAIL 78
G+N+A++
Sbjct: 62 RGDNVAVV 69
>gi|227827656|ref|YP_002829436.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.14.25]
gi|227830352|ref|YP_002832132.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
L.S.2.15]
gi|229579169|ref|YP_002837567.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
Y.G.57.14]
gi|229582076|ref|YP_002840475.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus
Y.N.15.51]
gi|229584860|ref|YP_002843362.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.16.27]
gi|238619824|ref|YP_002914650.1| Sm ribonucleoprotein-like protein [Sulfolobus islandicus M.16.4]
gi|284997857|ref|YP_003419624.1| Like-Sm ribonucleoprotein, core [Sulfolobus islandicus L.D.8.5]
gi|385773326|ref|YP_005645892.1| Sm ribonucleoprotein core-like protein [Sulfolobus islandicus
HVE10/4]
gi|385775964|ref|YP_005648532.1| archaeal Sm1 protein [Sulfolobus islandicus REY15A]
gi|227456800|gb|ACP35487.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus L.S.2.15]
gi|227459452|gb|ACP38138.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.14.25]
gi|228009883|gb|ACP45645.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus Y.G.57.14]
gi|228012792|gb|ACP48553.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus Y.N.15.51]
gi|228019910|gb|ACP55317.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.16.27]
gi|238380894|gb|ACR41982.1| Like-Sm ribonucleoprotein core [Sulfolobus islandicus M.16.4]
gi|284445752|gb|ADB87254.1| Like-Sm ribonucleoprotein, core [Sulfolobus islandicus L.D.8.5]
gi|323474712|gb|ADX85318.1| archaeal Sm1 protein [Sulfolobus islandicus REY15A]
gi|323477440|gb|ADX82678.1| Sm ribonucleoprotein core-like protein [Sulfolobus islandicus
HVE10/4]
Length = 76
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 22 IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVP 80
+ V +KG+KE+ GTL+ +D ++N+VL D E + G+ KL I++ G+N+ ++ P
Sbjct: 17 VLVKLKGNKEVRGTLRSYDQHMNLVLSDSEEIQSDGSGK---KLGTIVIRGDNVILISP 72
>gi|284162105|ref|YP_003400728.1| Sm ribonucleoprotein-like protein [Archaeoglobus profundus DSM
5631]
gi|284012102|gb|ADB58055.1| Like-Sm ribonucleoprotein core [Archaeoglobus profundus DSM 5631]
Length = 74
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P +++++ + + + V +KG +E G L G+D+++N+VLE+ E + G + KL ++
Sbjct: 5 PLDVLNKALQTPVLVRLKGGREFRGILNGYDIHMNIVLENAEEIQ---NGEVVRKLGSVV 61
Query: 70 LNGNNIAILVP 80
+ G+ + + P
Sbjct: 62 IRGDTVVFVSP 72
>gi|430813883|emb|CCJ28802.1| unnamed protein product [Pneumocystis jirovecii]
Length = 97
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
N S L P +L+ + +++V ++GD+E+ G L +D ++NMVL DV E
Sbjct: 10 NTSVLEPLDLVRLSLDERVYVKLRGDREIKGRLHAYDSHLNMVLSDVEE 58
>gi|67478492|ref|XP_654638.1| small nuclear ribonucleoprotein [Entamoeba histolytica HM-1:IMSS]
gi|56471705|gb|EAL49252.1| small nuclear ribonucleoprotein, putative [Entamoeba histolytica
HM-1:IMSS]
gi|407040392|gb|EKE40106.1| LSM domain containing protein [Entamoeba nuttalli P19]
gi|449708080|gb|EMD47607.1| small nuclear ribonucleoprotein, putative [Entamoeba histolytica
KU27]
Length = 89
Score = 44.3 bits (103), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 5 PSQLLPSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
+ +LP + I K IW+ + GTL GFD Y+N+VL D E + R
Sbjct: 8 KAMILPVKFIVNLAKHKQRVSIWLFENTALRIEGTLSGFDQYINLVLTDTEEVYLKTNTR 67
Query: 61 RITKLDQILLNGNNIAIL 78
R K+ ILL G NI+++
Sbjct: 68 R--KIGTILLKGENISVI 83
>gi|348682103|gb|EGZ21919.1| hypothetical protein PHYSODRAFT_285678 [Phytophthora sojae]
Length = 92
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P +LI + +I+V +GD+EL G L+ +D ++NMVL DV E
Sbjct: 7 PLDLIKLSVAERIYVKCRGDRELRGVLQAYDQHLNMVLSDVEE 49
>gi|67623475|ref|XP_668020.1| small nuclear ribonucleoprotein [Cryptosporidium hominis TU502]
gi|54659204|gb|EAL37793.1| similar to small nuclear ribonucleoprotein [Cryptosporidium
hominis]
Length = 139
Score = 44.3 bits (103), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQ----IL 69
+ + I +I V ++ D+ +VG L FD ++N+VL D EY +G +L + I+
Sbjct: 1 MQKYINYRIRVTVQDDRVMVGNLMAFDRHMNLVLSDCQEYRRVKKGEEPKELKRSLGLIM 60
Query: 70 LNGNNIAILVPGGSP 84
L G NI V P
Sbjct: 61 LRGENIVTFVAEAPP 75
>gi|167379643|ref|XP_001735222.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165902891|gb|EDR28600.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
Length = 84
Score = 43.9 bits (102), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 6/78 (7%)
Query: 5 PSQLLPSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
+ +LP + I K IW+ + GTL GFD Y+N+VL D E + R
Sbjct: 3 KAMILPVKFIVNLAKHKQRVSIWLFENTALRIEGTLSGFDQYINLVLTDTEEVYLKTNTR 62
Query: 61 RITKLDQILLNGNNIAIL 78
R K+ ILL G NI+++
Sbjct: 63 R--KIGTILLKGENISVI 78
>gi|115474803|ref|NP_001060998.1| Os08g0151400 [Oryza sativa Japonica Group]
gi|113622967|dbj|BAF22912.1| Os08g0151400, partial [Oryza sativa Japonica Group]
Length = 64
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVP 80
+IW+ + D + G + GFD Y+N+VL+D E + + R+ L +ILL G+NI +++
Sbjct: 4 QIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEINVKKDTRK--SLGRILLKGDNITLMMN 61
Query: 81 GGS 83
G
Sbjct: 62 TGK 64
>gi|433590264|ref|YP_007279760.1| small nuclear ribonucleoprotein [Natrinema pellirubrum DSM 15624]
gi|448332329|ref|ZP_21521573.1| Sm ribonucleoprotein-like protein [Natrinema pellirubrum DSM
15624]
gi|448383664|ref|ZP_21562844.1| Sm ribonucleoprotein-like protein [Haloterrigena thermotolerans
DSM 11522]
gi|433305044|gb|AGB30856.1| small nuclear ribonucleoprotein [Natrinema pellirubrum DSM 15624]
gi|445627433|gb|ELY80757.1| Sm ribonucleoprotein-like protein [Natrinema pellirubrum DSM
15624]
gi|445659266|gb|ELZ12073.1| Sm ribonucleoprotein-like protein [Haloterrigena thermotolerans
DSM 11522]
Length = 74
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEG--RRITKLDQ 67
P ++++ +G ++ V +K E VG L G+D ++N+VLEDVT I EG + D
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLSGYDQHMNLVLEDVT---IPVEGVDQEAPAEDT 61
Query: 68 ILLNGNNIAILVP 80
++ G+N+ + P
Sbjct: 62 TIIRGDNVVSITP 74
>gi|402224412|gb|EJU04475.1| LSM-domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 93
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVP 80
+IW+ + + G + GFD ++N+VL+D +E ++ E + L +ILL G+NI ++ P
Sbjct: 27 QIWLYDNVEMRIEGRIIGFDEFMNVVLDDASEVFVSEESKSPRSLGRILLKGDNITLIQP 86
Query: 81 GG 82
Sbjct: 87 SS 88
>gi|291235504|ref|XP_002737683.1| PREDICTED: small nuclear ribonucleoprotein polypeptide E-like
[Saccoglossus kowalevskii]
Length = 92
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 44/73 (60%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + S+ +W+ + + + G + GFD Y+N+VL+D EY + ++ R+ L
Sbjct: 15 PINLIFRYLQSRSRIQVWLYEQVNMRIEGHIIGFDEYMNLVLDDAEEYHMKSKTRKT--L 72
Query: 66 DQILLNGNNIAIL 78
+++L G+NI ++
Sbjct: 73 GRVMLKGDNITLI 85
>gi|301106621|ref|XP_002902393.1| U6 snRNA-associated Sm-like protein LSm3, putative [Phytophthora
infestans T30-4]
gi|262098267|gb|EEY56319.1| U6 snRNA-associated Sm-like protein LSm3, putative [Phytophthora
infestans T30-4]
Length = 92
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 29/43 (67%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P +LI + +I+V +GD+EL G L+ +D ++NMVL DV E
Sbjct: 7 PLDLIKLSVAERIYVKCRGDRELRGVLQAYDQHLNMVLSDVEE 49
>gi|374633102|ref|ZP_09705469.1| small nuclear ribonucleoprotein [Metallosphaera yellowstonensis
MK1]
gi|373524586|gb|EHP69463.1| small nuclear ribonucleoprotein [Metallosphaera yellowstonensis
MK1]
Length = 78
Score = 43.9 bits (102), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
+L+ +G+ + V +KG+KE+ G LK +D ++N+VL D E + G+ K+ I+
Sbjct: 8 AHKLLAESLGNLVLVKLKGNKEVRGLLKSYDQHMNLVLSDSEEIQSDGGGK---KMGTIV 64
Query: 70 LNGNNIAILVP 80
+ G+N+ ++ P
Sbjct: 65 IRGDNVILISP 75
>gi|452077675|gb|AGF93625.1| like-Sm ribonucleoprotein, eukaryotic and archaea-type, core
[uncultured organism]
Length = 73
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
PS ++ + +++ +++K L GTL GFD ++N+VLED E + + RR ++ I+
Sbjct: 6 PSNFLNENLDTEVELLLKDGSILKGTLIGFDDHMNLVLEDTEEKK--EDSRR--RIGTII 61
Query: 70 LNGNNIAILVP 80
L GNN+ L P
Sbjct: 62 LRGNNVVTLNP 72
>gi|154300461|ref|XP_001550646.1| hypothetical protein BC1G_11054 [Botryotinia fuckeliana B05.10]
gi|347828363|emb|CCD44060.1| similar to small nuclear ribonucleoprotein g [Botryotinia
fuckeliana]
Length = 85
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 47/79 (59%), Gaps = 8/79 (10%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + +++V + G ++++G L+G+DV++N+VL+D E EG K+ +++ GN
Sbjct: 8 LKKYLDKRLFVQLNGSRKVIGVLRGYDVFLNIVLDDAVE---EKEGGEKVKIGMVVIRGN 64
Query: 74 NIAIL-----VPGGSPDPE 87
++ +L + GG + E
Sbjct: 65 SVVMLEALERIGGGRENRE 83
>gi|268552449|ref|XP_002634207.1| C. briggsae CBR-LSM-3 protein [Caenorhabditis briggsae]
Length = 102
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 14/83 (16%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY------------EITA 57
P +L+ + K++V M+ D+EL G L+ FD ++NMVL +V E EI
Sbjct: 17 PLDLLRLSLDEKVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETITTREVDEDTFEEIYR 76
Query: 58 EGRRITKLDQILLNGNNIAILVP 80
+ +R+ + + + G+++ ++ P
Sbjct: 77 QSKRVVPM--LFVRGDSVILVSP 97
>gi|388851843|emb|CCF54437.1| probable LSM3-U6 snRNA-associated Sm-like protein [Ustilago hordei]
Length = 109
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY--------EITAEGRR 61
P +LI I +++V ++GD+EL GTL +D ++N++L DV E E E R
Sbjct: 25 PFDLIRLSISERVYVKLRGDRELRGTLHAYDGHMNLILGDVEETIYVVDINEETGKETVR 84
Query: 62 ITKL--DQILLNGNNIAILVPGGS 83
+ K + + + G+++ ++ P S
Sbjct: 85 VVKRQSEMLFVRGDSVILVSPPSS 108
>gi|255513759|gb|EET90024.1| Sm-family ribonucleoprotein [Candidatus Micrarchaeum acidiphilum
ARMAN-2]
Length = 75
Score = 43.9 bits (102), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P +L++R I ++ + +K + + G + FD ++N+VL++ E + A G KL IL
Sbjct: 6 PFDLLNRVISQQVLIRLKNNLNIRGKVTSFDAHMNIVLDNAEELD--ANGELKAKLGTIL 63
Query: 70 LNGNNIAILVP 80
L G NI + P
Sbjct: 64 LRGGNIIFVSP 74
>gi|330835854|ref|YP_004410582.1| like-Sm ribonucleoprotein, core [Metallosphaera cuprina Ar-4]
gi|329567993|gb|AEB96098.1| like-Sm ribonucleoprotein, core [Metallosphaera cuprina Ar-4]
Length = 75
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
+L+ +GS + V +KG+KE+ G LK +D ++N+VL D E + + + K+ I+
Sbjct: 5 AHKLLAESVGSLVLVKLKGNKEVRGYLKSYDQHMNLVLSDSVEIQNNNDEK---KMGTIV 61
Query: 70 LNGNNIAILVP 80
+ G+N+ ++ P
Sbjct: 62 IRGDNVILISP 72
>gi|327401120|ref|YP_004341959.1| snRNP Sm-like protein [Archaeoglobus veneficus SNP6]
gi|327316628|gb|AEA47244.1| snRNP Sm-like protein [Archaeoglobus veneficus SNP6]
Length = 74
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P +++++ + + + V +KG +E G L G+D+++N+VL++ E + G I KL ++
Sbjct: 5 PLDVLNKALQTPVLVRLKGGREFRGILNGYDIHMNLVLQNAEEIQ---GGEVIRKLGSVV 61
Query: 70 LNGNNIAILVP 80
+ G+ + + P
Sbjct: 62 IRGDTVVFVSP 72
>gi|383621641|ref|ZP_09948047.1| Like-Sm ribonucleoprotein core [Halobiforma lacisalsi AJ5]
gi|448702271|ref|ZP_21699925.1| Like-Sm ribonucleoprotein core [Halobiforma lacisalsi AJ5]
gi|445777641|gb|EMA28602.1| Like-Sm ribonucleoprotein core [Halobiforma lacisalsi AJ5]
Length = 76
Score = 43.9 bits (102), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVT---EYEITAEGRRITKLD 66
P ++++ +G ++ V +K E VG L G+D ++N+VLE+VT + I+ +G I D
Sbjct: 5 PLDVLEASLGERVAVRLKSGDEYVGELAGYDQHMNLVLEEVTIPADESISGDGEPIE--D 62
Query: 67 QILLNGNNIAILVP 80
++ G+N+ + P
Sbjct: 63 TTIIRGDNVVSITP 76
>gi|430813865|emb|CCJ28830.1| unnamed protein product [Pneumocystis jirovecii]
Length = 129
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
NP + L+ C+ K+ VI++ K+L+G L+ FD Y N+VL+ E
Sbjct: 6 NPHLFITYTLLHSCLDKKLMVILRDGKKLIGILRSFDQYANLVLQGTVE 54
>gi|374629344|ref|ZP_09701729.1| Small nuclear ribonucleoprotein, LSM family [Methanoplanus
limicola DSM 2279]
gi|373907457|gb|EHQ35561.1| Small nuclear ribonucleoprotein, LSM family [Methanoplanus
limicola DSM 2279]
Length = 75
Score = 43.5 bits (101), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 10 PSELIDRCIGSK-IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQI 68
P E++D+ + K + V +KG +E+ G L+G+DV++N+VLE+ E EI TK +
Sbjct: 5 PLEILDKALNQKPVIVSLKGGREIRGVLQGYDVHMNLVLENAEE-EING---VTTKAGTL 60
Query: 69 LLNGNNIAILVP 80
++ G+N+ + P
Sbjct: 61 IVRGDNVIYISP 72
>gi|449549919|gb|EMD40884.1| hypothetical protein CERSUDRAFT_131254 [Ceriporiopsis
subvermispora B]
Length = 97
Score = 43.5 bits (101), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 12/83 (14%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE-------YEITAEGRRI 62
P +LI + +++V ++GD+EL G L +D ++N++L DV E E +A G+
Sbjct: 11 PFDLIRLSLSERVFVKLRGDRELTGVLHAYDGHMNLILSDVEETIMIVDQVEGSANGQNT 70
Query: 63 T-----KLDQILLNGNNIAILVP 80
K+D + + G+ + ++ P
Sbjct: 71 VNIAKRKIDMLFVRGDGVILVSP 93
>gi|393215720|gb|EJD01211.1| like-Sm ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 77
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + K++V ++G +++ GTL+GFD+++N+VL+D E A+ + + +++ GN
Sbjct: 9 LKKFMDKKLFVHLQGGRKVSGTLRGFDIFLNLVLDDAIEETTPAQK---SPIGNVVIRGN 65
Query: 74 NIAIL 78
++ ++
Sbjct: 66 SVTLM 70
>gi|440801404|gb|ELR22424.1| LSM Smlike protein family member, putative [Acanthamoeba
castellanii str. Neff]
Length = 103
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 10/81 (12%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE----------G 59
P +LI + +I+V ++G++EL G L +D ++NMVL DV E T E
Sbjct: 18 PLDLIRLSLDDRIYVKLRGERELRGKLHAYDQHLNMVLGDVEETVTTVEMDEETDEEIIK 77
Query: 60 RRITKLDQILLNGNNIAILVP 80
RR ++ + + G+ + ++ P
Sbjct: 78 RRKRTVEMLFVRGDGVILVSP 98
>gi|91774104|ref|YP_566796.1| small nuclear ribonucleoprotein [Methanococcoides burtonii DSM
6242]
gi|121684189|sp|Q12U30.1|RUXX_METBU RecName: Full=Putative snRNP Sm-like protein
gi|91713119|gb|ABE53046.1| Sm or Sm-like protein, RNA-binding [Methanococcoides burtonii DSM
6242]
Length = 72
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++++ + + + V +KG +E G L+G+DV++N+VL++ E + +G + K+ ++
Sbjct: 5 PLDILNDALNTSVIVRLKGAREFRGVLQGYDVHMNLVLDEAEELK---DGEIVRKIGGVV 61
Query: 70 LNGNNIAILVP 80
+ G+N+ + P
Sbjct: 62 IRGDNVVYVSP 72
>gi|380478035|emb|CCF43823.1| LSM domain-containing protein [Colletotrichum higginsianum]
Length = 108
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 46/78 (58%), Gaps = 8/78 (10%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + +++V + G ++++G L+G+DV++N+VL++ E EG +L +++ GN
Sbjct: 8 LKKYLDKRLFVQLNGSRKVIGVLRGYDVFLNIVLDEAVE---EKEGGEKVRLGMVVIRGN 64
Query: 74 NIAIL-----VPGGSPDP 86
++ +L + G P P
Sbjct: 65 SVVMLEALERIGGRRPQP 82
>gi|440804396|gb|ELR25273.1| u6 snrnaassociated sm-like protein lsm8, putative [Acanthamoeba
castellanii str. Neff]
Length = 94
Score = 43.5 bits (101), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
IDR + +I + +VGTL+GFD + N+++ED E +A+G L ++ G+
Sbjct: 8 IDRTVS----IITSDARSIVGTLRGFDQFANVIVEDSHERVYSAQGMEKVPLGLYVIRGD 63
Query: 74 NIAIL 78
NIA++
Sbjct: 64 NIAVI 68
>gi|392334358|ref|XP_002725436.2| PREDICTED: small nuclear ribonucleoprotein E-like [Rattus
norvegicus]
gi|392355007|ref|XP_002728648.2| PREDICTED: small nuclear ribonucleoprotein E-like [Rattus
norvegicus]
Length = 92
Score = 43.5 bits (101), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 47/73 (64%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
PS LI R + ++ +W+ + + + G + GFD Y+N+VL+D TE EI ++ + +L
Sbjct: 17 PSSLIIRYLQNRSRIQVWLYEQVNMWIEGCIIGFDEYMNLVLDD-TE-EIHSKTKSGKQL 74
Query: 66 DQILLNGNNIAIL 78
QI+L G+NIA+L
Sbjct: 75 GQIMLKGDNIALL 87
>gi|257076591|ref|ZP_05570952.1| small nuclear ribonucleoprotein [Ferroplasma acidarmanus fer1]
Length = 84
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P E + + I + +KG++ G L+G+D+Y+N+VL++ TE T +L
Sbjct: 13 PMETLKNSLEKNIMIDVKGNRMYSGILEGYDIYMNLVLKNATE---TINNENKGTFSMML 69
Query: 70 LNGNNIAILVPGG 82
L G+NI + P G
Sbjct: 70 LRGDNIIFVSPPG 82
>gi|432329090|ref|YP_007247234.1| small nuclear ribonucleoprotein [Aciduliprofundum sp. MAR08-339]
gi|432135799|gb|AGB05068.1| small nuclear ribonucleoprotein [Aciduliprofundum sp. MAR08-339]
Length = 75
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 7 QLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLD 66
QL P ++ + + V MKG+KE G L G+D ++N+VL++V E I E + + +
Sbjct: 4 QLKPLHVLHESLNKPVLVAMKGNKEYRGVLDGYDQHLNLVLKNVEEI-INGESKGVHNV- 61
Query: 67 QILLNGNNIAILVP 80
+++ G+N+ + P
Sbjct: 62 -VIVRGDNVIYISP 74
>gi|159472134|ref|XP_001694206.1| small nuclear ribonucleoprotein E [Chlamydomonas reinhardtii]
gi|158276869|gb|EDP02639.1| small nuclear ribonucleoprotein E [Chlamydomonas reinhardtii]
Length = 87
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P L+ R + SK IW+ + D + G + GFD Y+N+VL++ E + + R+ L
Sbjct: 12 PINLMFRFLQSKQKVQIWLFDQADLRVEGRIIGFDEYMNLVLDEAEEVSMKRKTRKT--L 69
Query: 66 DQILLNGNNIAILVPGG 82
+ILL G+NI ++ G
Sbjct: 70 GRILLKGDNITLIQTTG 86
>gi|340054745|emb|CCC49047.1| putative small nuclear ribonucleoprotein SmD2 [Trypanosoma vivax
Y486]
Length = 111
Score = 43.1 bits (100), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
+A P LL S + D G+++++ + +K LV T+ FD + N+VL D E + +
Sbjct: 29 VAAGPFSLLESAVRD---GTRVFIQSRFNKSLVATVVAFDKHFNLVLRDAVELTMVKNEQ 85
Query: 61 RITKLDQILLNGNNIAILV 79
R + + L G+++ +V
Sbjct: 86 RERSIRNMFLRGSSVVFVV 104
>gi|328770153|gb|EGF80195.1| hypothetical protein BATDEDRAFT_11709 [Batrachochytrium
dendrobatidis JAM81]
Length = 70
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+DR + K++V + G++++ G L+G+D ++N+VLED +E +G + L I++ GN
Sbjct: 1 MDRYMDRKLFVQLNGNRKVTGVLRGYDPFMNIVLEDASEE--LGDGEK-NFLGSIVVRGN 57
Query: 74 NIAIL 78
+I +L
Sbjct: 58 SIGVL 62
>gi|254166962|ref|ZP_04873815.1| hypothetical protein ABOONEI_370 [Aciduliprofundum boonei T469]
gi|289597064|ref|YP_003483760.1| Like-Sm ribonucleoprotein core [Aciduliprofundum boonei T469]
gi|197623818|gb|EDY36380.1| hypothetical protein ABOONEI_370 [Aciduliprofundum boonei T469]
gi|289534851|gb|ADD09198.1| Like-Sm ribonucleoprotein core [Aciduliprofundum boonei T469]
Length = 75
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 43/74 (58%), Gaps = 3/74 (4%)
Query: 7 QLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLD 66
QL P ++ + + V MKG+KE G L G+D ++N+VL++V E I E + + +
Sbjct: 4 QLKPLHVLHESLNKPVLVAMKGNKEYRGVLDGYDQHLNLVLKNVEEI-INGESKGVHNV- 61
Query: 67 QILLNGNNIAILVP 80
+++ G+N+ + P
Sbjct: 62 -VIVRGDNVIYISP 74
>gi|156040265|ref|XP_001587119.1| hypothetical protein SS1G_12149 [Sclerotinia sclerotiorum 1980]
gi|154696205|gb|EDN95943.1| hypothetical protein SS1G_12149 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 84
Score = 43.1 bits (100), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + +++V + G ++++G L+G+DV++N+VL+D E EG K+ +++ GN
Sbjct: 8 LKKYLDKRLFVQLNGSRKVIGVLRGYDVFLNIVLDDAVE---EKEGGEKVKIGMVVIRGN 64
Query: 74 NIAIL 78
++ +L
Sbjct: 65 SVVML 69
>gi|124028416|ref|YP_001013736.1| putative snRNP Sm protein [Hyperthermus butylicus DSM 5456]
gi|123979110|gb|ABM81391.1| putative snRNP Sm protein [Hyperthermus butylicus DSM 5456]
Length = 77
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 17 CIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIA 76
IGS + V +KG E+ G LK +D ++N+VLED EI +G R KL I++ G+ +
Sbjct: 12 SIGSIVLVKLKGANEVRGRLKSYDQHLNLVLEDAE--EIYEDG-RTRKLGTIVIRGDTVL 68
Query: 77 ILVPG 81
++ P
Sbjct: 69 LISPA 73
>gi|443895185|dbj|GAC72531.1| small nuclear ribonucleoprotein [Pseudozyma antarctica T-34]
Length = 104
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY--------EITAEGRR 61
P +LI I +++V ++GD+EL GTL +D ++N++L DV E E E R
Sbjct: 20 PFDLIRLSISERVYVKLRGDRELRGTLHAYDGHMNLILGDVEETIYVVDINDENGHETVR 79
Query: 62 ITKL--DQILLNGNNIAILVPGGS 83
+ K + + + G+++ ++ P S
Sbjct: 80 VVKRQSEMLFVRGDSVILVSPPAS 103
>gi|302845648|ref|XP_002954362.1| hypothetical protein VOLCADRAFT_82766 [Volvox carteri f.
nagariensis]
gi|300260292|gb|EFJ44512.1| hypothetical protein VOLCADRAFT_82766 [Volvox carteri f.
nagariensis]
Length = 87
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P L+ R + SK IW+ + D + G + GFD Y+N+VL++ E + + R+ L
Sbjct: 12 PINLMFRFLQSKQKVQIWLYDQADLRIEGRIIGFDEYMNLVLDEAEEVSMKRKNRKT--L 69
Query: 66 DQILLNGNNIAILVPGG 82
+ILL G+NI ++ G
Sbjct: 70 GRILLKGDNITLIQTTG 86
>gi|14591301|ref|NP_143379.1| small nuclear ribonucleoprotein [Pyrococcus horikoshii OT3]
gi|6094216|sp|O74016.1|RUXX_PYRHO RecName: Full=Putative snRNP Sm-like protein
gi|3257945|dbj|BAA30628.1| 75aa long hypothetical small nucleoprotein [Pyrococcus horikoshii
OT3]
Length = 75
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++I R + + VI+K E G L G+D+++N+VL D E+ +G + K +I+
Sbjct: 5 PLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADA---EMVQDGEVVKKYGKIV 61
Query: 70 LNGNNIAILVP 80
+ G+N+ + P
Sbjct: 62 IRGDNVLAISP 72
>gi|367051545|ref|XP_003656151.1| hypothetical protein THITE_2120569 [Thielavia terrestris NRRL
8126]
gi|347003416|gb|AEO69815.1| hypothetical protein THITE_2120569 [Thielavia terrestris NRRL
8126]
Length = 83
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + +++V + G ++++G L+G+DV++N+VL+D E + E KL +++ GN
Sbjct: 8 LKKYLDKRLFVQLNGSRKVIGVLRGYDVFLNIVLDDAVEEKDNGEK---AKLGMVVIRGN 64
Query: 74 NIAIL 78
++ +L
Sbjct: 65 SVVML 69
>gi|342905932|gb|AEL79249.1| small nuclear ribonucleoprotein E [Rhodnius prolixus]
gi|342905938|gb|AEL79252.1| small nuclear ribonucleoprotein E [Rhodnius prolixus]
Length = 97
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + G + GFD Y+N+VL+D EY I + RR L
Sbjct: 16 PINLIFRYLQNRSRVCVWLYENINLRIEGHIVGFDEYMNLVLDDAEEYNIKTKNRR--PL 73
Query: 66 DQILLNGNNIAIL 78
+I++ G+NI ++
Sbjct: 74 GRIMMKGDNITLI 86
>gi|156554389|ref|XP_001600882.1| PREDICTED: probable small nuclear ribonucleoprotein E-like
[Nasonia vitripennis]
Length = 94
Score = 43.1 bits (100), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + G + GFD Y+N+VL+D EY + ++ R+ L
Sbjct: 16 PINLIFRYLQNRSRVSVWLFENINLRIEGHIVGFDEYMNLVLDDAEEYHVKSKTRK--PL 73
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI ++
Sbjct: 74 GRIMLKGDNITLI 86
>gi|449302452|gb|EMC98461.1| hypothetical protein BAUCODRAFT_138202 [Baudoinia compniacensis
UAMH 10762]
Length = 95
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 8/79 (10%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE--YEITAEG-----RRI 62
P +L+ + ++V ++GD+EL G L +D + N+VL +VTE Y++ E R +
Sbjct: 15 PLDLVRLSLNETVFVKLRGDRELQGRLHAYDSHCNLVLGEVTETIYQVAEEAGGEDVRTL 74
Query: 63 TKLDQILL-NGNNIAILVP 80
K ++L G+++ ++ P
Sbjct: 75 KKQSEMLFVRGDSVVLISP 93
>gi|384252439|gb|EIE25915.1| small nuclear ribonucleo protein E [Coccomyxa subellipsoidea
C-169]
Length = 87
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + S+ IW+ + D + G + GFD Y+N+VL++ E + + R+ L
Sbjct: 12 PINLIFRFLQSRQKVQIWLYEQTDLRIEGRIIGFDEYMNLVLDEAEEVSMKRKTRK--AL 69
Query: 66 DQILLNGNNIAILVPGGS 83
+ILL G+NI ++ G
Sbjct: 70 GRILLKGDNITLMQTTGR 87
>gi|237844935|ref|XP_002371765.1| LSM domain-containing protein [Toxoplasma gondii ME49]
gi|211969429|gb|EEB04625.1| LSM domain-containing protein [Toxoplasma gondii ME49]
gi|221480823|gb|EEE19247.1| LSM domain-containing protein, putative [Toxoplasma gondii GT1]
gi|221501570|gb|EEE27343.1| LSM domain-containing protein, putative [Toxoplasma gondii VEG]
Length = 96
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 12/89 (13%)
Query: 4 NPSQLL--PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRR 61
+P+ LL P +++ + ++ + +GD+E+VG L +D+++NMVL DV E T
Sbjct: 2 DPTLLLQEPLDIVRVSLDERVTIKCRGDREVVGKLHAYDMHLNMVLGDVEEVATTVTSDP 61
Query: 62 IT----------KLDQILLNGNNIAILVP 80
+T +L I L G+ I ++ P
Sbjct: 62 LTGDEQTKKTTRRLPLIFLRGDAIILVAP 90
>gi|145492122|ref|XP_001432059.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|145499004|ref|XP_001435488.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124399168|emb|CAK64662.1| unnamed protein product [Paramecium tetraurelia]
gi|124402621|emb|CAK68091.1| unnamed protein product [Paramecium tetraurelia]
Length = 95
Score = 43.1 bits (100), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 13/89 (14%)
Query: 1 MAHNPSQLLPSELIDRCIGS-----------KIWVIMKGDKELVGTLKGFDVYVNMVLED 49
M H P Q P + I + + + +IW++ + + G L GFD Y+N+VL+
Sbjct: 1 MQHPPYQRKPQKKITQPLHAFFTLFTEKTQLEIWLVENDNLRIQGKLAGFDEYLNLVLDR 60
Query: 50 VTEYEITAEGRRITKLDQILLNGNNIAIL 78
EY+ + + +L +ILL G NI ++
Sbjct: 61 AVEYDRKTKATK--ELGKILLKGENIVLV 87
>gi|302845652|ref|XP_002954364.1| hypothetical protein VOLCADRAFT_64746 [Volvox carteri f.
nagariensis]
gi|300260294|gb|EFJ44514.1| hypothetical protein VOLCADRAFT_64746 [Volvox carteri f.
nagariensis]
Length = 87
Score = 43.1 bits (100), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P L+ R + SK IW+ + D + G + GFD Y+N+VL++ E + + R+ L
Sbjct: 12 PINLMFRFLQSKQKVQIWLYDQADLRVEGRIIGFDEYMNLVLDEAEEVSMKRKNRKT--L 69
Query: 66 DQILLNGNNIAILVPGG 82
+ILL G+NI ++ G
Sbjct: 70 GRILLKGDNITLIQTTG 86
>gi|333656537|gb|AEF68171.1| Sm-E-like protein [Physarum polycephalum]
Length = 90
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 6/77 (7%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + +K IW+ + D + G + GFD Y+N+VL+D E + ++ L
Sbjct: 15 PINLIFRYLQNKSRIQIWLYEQNDVRIEGRIIGFDEYMNLVLDDADEIFVKKNTKK--HL 72
Query: 66 DQILLNGNNIAILVPGG 82
+ILL G+NI +++ G
Sbjct: 73 GRILLKGDNITLMMNTG 89
>gi|116780366|gb|ABK21652.1| unknown [Picea sitchensis]
Length = 79
Score = 42.7 bits (99), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 2/63 (3%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVP 80
+IW+ + D + G + GFD Y+N+VLED EI+ + + L +ILL G+NI +++
Sbjct: 19 QIWLFEQKDLRIEGRIIGFDEYMNLVLEDAE--EISVKRKTHKPLGRILLKGDNITLMMN 76
Query: 81 GGS 83
G
Sbjct: 77 TGK 79
>gi|448717214|ref|ZP_21702669.1| Like-Sm ribonucleoprotein core [Halobiforma nitratireducens JCM
10879]
gi|445786018|gb|EMA36794.1| Like-Sm ribonucleoprotein core [Halobiforma nitratireducens JCM
10879]
Length = 78
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYE---ITAEGRRITKLD 66
P ++++ +G ++ V +K E VG L G+D ++N+VLEDV + E R D
Sbjct: 5 PLDVLEASLGERVSVRLKSGDEYVGNLAGYDQHMNLVLEDVASAADGTVADEEREEPIED 64
Query: 67 QILLNGNNIAILVP 80
++ G+N+ + P
Sbjct: 65 TTIIRGDNVVSITP 78
>gi|340370917|ref|XP_003383992.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like
[Amphimedon queenslandica]
Length = 105
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +L+ + +++V M+ D+EL G L GFD ++NM++ +V E T E
Sbjct: 17 PLDLVRLSLDERLYVKMRNDRELTGRLHGFDQHLNMIMSEVEETVTTLE 65
>gi|170065245|ref|XP_001867860.1| small nuclear ribonucleoprotein E [Culex quinquefasciatus]
gi|167882312|gb|EDS45695.1| small nuclear ribonucleoprotein E [Culex quinquefasciatus]
Length = 91
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + G + GFD Y+N+VL++ EY I + RR L
Sbjct: 15 PINLIFRYLQNRSRVQVWLYENTHLRIEGHIVGFDEYMNLVLDEAEEYNIKKQNRRT--L 72
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI ++
Sbjct: 73 GRIMLKGDNITLI 85
>gi|325959826|ref|YP_004291292.1| snRNP Sm-like protein [Methanobacterium sp. AL-21]
gi|325331258|gb|ADZ10320.1| snRNP Sm-like protein [Methanobacterium sp. AL-21]
Length = 80
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P +++ + + S++ + +KG +E G LK FD+++N+VL + E + +R L +L
Sbjct: 12 PLDVLGKSLNSQVLIELKGGREFRGLLKSFDMHMNLVLNEAEELDGLETAKR---LGIVL 68
Query: 70 LNGNNIAILVP 80
+ G+NI + P
Sbjct: 69 IRGDNIVYISP 79
>gi|332157748|ref|YP_004423027.1| small nuclear ribonucleoprotein [Pyrococcus sp. NA2]
gi|331033211|gb|AEC51023.1| small nuclear ribonucleoprotein [Pyrococcus sp. NA2]
Length = 75
Score = 42.7 bits (99), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++I R + + VI+K E G L G+D+++N+VL D E+ +G + K +I+
Sbjct: 5 PLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADA---EMIQDGEVVKKYGKIV 61
Query: 70 LNGNNIAILVP 80
+ G+N+ + P
Sbjct: 62 IRGDNVLAISP 72
>gi|429192031|ref|YP_007177709.1| small nuclear ribonucleoprotein [Natronobacterium gregoryi SP2]
gi|448324725|ref|ZP_21514137.1| Like-Sm ribonucleoprotein core [Natronobacterium gregoryi SP2]
gi|429136249|gb|AFZ73260.1| small nuclear ribonucleoprotein [Natronobacterium gregoryi SP2]
gi|445617688|gb|ELY71281.1| Like-Sm ribonucleoprotein core [Natronobacterium gregoryi SP2]
Length = 75
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++++ +G ++ V +K E VG L G+D ++N+VLEDVT + + D +
Sbjct: 5 PLDVLEASLGERVSVRLKSGDEYVGDLAGYDQHMNLVLEDVTSAADESVTDDESIEDTTI 64
Query: 70 LNGNNIAILVP 80
+ G+N+ + P
Sbjct: 65 IRGDNVVSITP 75
>gi|367030948|ref|XP_003664757.1| hypothetical protein MYCTH_2119714 [Myceliophthora thermophila
ATCC 42464]
gi|347012028|gb|AEO59512.1| hypothetical protein MYCTH_2119714 [Myceliophthora thermophila
ATCC 42464]
Length = 83
Score = 42.7 bits (99), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + +++V + G ++++G L+G+DV++N+VL+D E + E KL +++ GN
Sbjct: 8 LKKYLDKRLFVQLNGSRKVIGVLRGYDVFLNIVLDDAVEEKDNGEK---VKLGMVVIRGN 64
Query: 74 NIAIL 78
++ +L
Sbjct: 65 SVVML 69
>gi|337284247|ref|YP_004623721.1| small nuclear ribonucleoprotein [Pyrococcus yayanosii CH1]
gi|334900181|gb|AEH24449.1| small nuclear ribonucleoprotein [Pyrococcus yayanosii CH1]
Length = 82
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++I R + + VI+K E G L G+D+++N+VL D E+ +G + K +I+
Sbjct: 13 PLDVIHRSLDKDVLVILKKGFEFRGKLIGYDIHLNVVLADA---EMIQDGEVVKKYGKIV 69
Query: 70 LNGNNIAILVP 80
+ G+N+ + P
Sbjct: 70 IRGDNVLAISP 80
>gi|332373734|gb|AEE62008.1| unknown [Dendroctonus ponderosae]
Length = 101
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +L+ + KI+V M+ D+EL G L +D ++NM+L DV E T E
Sbjct: 16 PLDLVRLSLDEKIYVKMRNDRELKGRLHAYDQHMNMILSDVEETITTVE 64
>gi|353227274|emb|CCA77787.1| probable small nuclear ribonucleoprotein E [Piriformospora indica
DSM 11827]
Length = 87
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 22 IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVP 80
IW+ + + G + GFD Y+N+V++D TE T EGR L +ILL G NI ++ P
Sbjct: 28 IWLYDNVEMRIEGRIIGFDEYMNVVMDDATEV-YTKEGRPSVPLGRILLKGENITLIQP 85
>gi|156400726|ref|XP_001638943.1| predicted protein [Nematostella vectensis]
gi|156226068|gb|EDO46880.1| predicted protein [Nematostella vectensis]
Length = 102
Score = 42.7 bits (99), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+EL G L +D ++NM+L DV E T E
Sbjct: 16 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILSDVEETITTVE 64
>gi|17543872|ref|NP_502579.1| Protein LSM-3 [Caenorhabditis elegans]
gi|14530659|emb|CAB60606.2| Protein LSM-3 [Caenorhabditis elegans]
Length = 102
Score = 42.7 bits (99), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +L+ + +++V M+ D+EL G L+ FD ++NMVL +V E T E
Sbjct: 17 PLDLLRLSLDERVYVKMRNDRELRGRLRAFDQHLNMVLSEVEETITTRE 65
>gi|398397857|ref|XP_003852386.1| hypothetical protein MYCGRDRAFT_104681 [Zymoseptoria tritici
IPO323]
gi|339472267|gb|EGP87362.1| hypothetical protein MYCGRDRAFT_104681 [Zymoseptoria tritici
IPO323]
Length = 93
Score = 42.7 bits (99), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + ++ V + G ++++GTL+G+DV++N+VL++ TE + AE R L ++ GN
Sbjct: 8 LKKYLDKRVEVQLNGSRKVMGTLRGYDVFLNIVLDEATESKPNAEKVR---LGMCVIRGN 64
Query: 74 NIAIL 78
++ ++
Sbjct: 65 SVVMM 69
>gi|448306523|ref|ZP_21496427.1| Like-Sm ribonucleoprotein core [Natronorubrum bangense JCM 10635]
gi|445597821|gb|ELY51893.1| Like-Sm ribonucleoprotein core [Natronorubrum bangense JCM 10635]
Length = 75
Score = 42.7 bits (99), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 14/78 (17%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVT-------EYEITAEGRRI 62
P ++++ +G ++ V +K E VG L G+D ++N+VLEDVT E E AE
Sbjct: 5 PLDVLEASLGERVSVRLKSGDEYVGDLAGYDQHMNLVLEDVTIPVGDEVESESPAE---- 60
Query: 63 TKLDQILLNGNNIAILVP 80
D ++ G+N+ + P
Sbjct: 61 ---DTTIIRGDNVVSITP 75
>gi|448303276|ref|ZP_21493225.1| Like-Sm ribonucleoprotein core [Natronorubrum sulfidifaciens JCM
14089]
gi|445593061|gb|ELY47239.1| Like-Sm ribonucleoprotein core [Natronorubrum sulfidifaciens JCM
14089]
Length = 75
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 14/78 (17%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVT-------EYEITAEGRRI 62
P ++++ +G ++ V +K E VG L G+D ++N+VLEDVT E E AE
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLAGYDQHMNLVLEDVTIPIGDEVESESPAE---- 60
Query: 63 TKLDQILLNGNNIAILVP 80
D ++ G+N+ + P
Sbjct: 61 ---DTTIIRGDNVVSITP 75
>gi|429327489|gb|AFZ79249.1| small nuclear ribonucleoprotein-associated protein B, putative
[Babesia equi]
Length = 153
Score = 42.7 bits (99), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Query: 22 IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEIT--AEGRRITK-LDQILLNGNNI 75
+ V +K ++ VGTL FD ++N+VL D E+ +T EG+ I + L ILL G NI
Sbjct: 16 VRVTVKDGRKFVGTLIAFDKHMNLVLADCEEFRMTKGKEGKEIKRTLGFILLRGENI 72
>gi|448348652|ref|ZP_21537500.1| Like-Sm ribonucleoprotein core [Natrialba taiwanensis DSM 12281]
gi|448369167|ref|ZP_21555934.1| Like-Sm ribonucleoprotein core [Natrialba aegyptia DSM 13077]
gi|445642313|gb|ELY95381.1| Like-Sm ribonucleoprotein core [Natrialba taiwanensis DSM 12281]
gi|445651710|gb|ELZ04618.1| Like-Sm ribonucleoprotein core [Natrialba aegyptia DSM 13077]
Length = 78
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK---LD 66
P ++++ +G ++ V +K E VG L G+D ++N+VLED T + E T D
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGELGGYDQHMNLVLEDATNAADSDETEPATAESVED 64
Query: 67 QILLNGNNIAILVP 80
++ G+N+ + P
Sbjct: 65 TTIIRGDNVVSITP 78
>gi|386002990|ref|YP_005921289.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
harundinacea 6Ac]
gi|357211046|gb|AET65666.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
harundinacea 6Ac]
Length = 65
Score = 42.4 bits (98), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 18 IGSKIWVIMKGDKE--LVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNI 75
IGS+I V MKG + L GTL D Y+N+ L++ E +G R L ++L GNNI
Sbjct: 2 IGSRIKVEMKGSQRNVLEGTLNSVDDYLNLHLQETVE---IVDGERARSLGSVILRGNNI 58
Query: 76 AILVP 80
++ P
Sbjct: 59 ILISP 63
>gi|328778046|ref|XP_003249437.1| PREDICTED: probable small nuclear ribonucleoprotein E-like [Apis
mellifera]
Length = 94
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + G + GFD Y+N+VL+D EY + + R+ L
Sbjct: 16 PINLIFRYLQNRSRVQVWLFENINLRIEGHIVGFDEYMNLVLDDAEEYHLKTKNRK--PL 73
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI ++
Sbjct: 74 GRIMLKGDNITLI 86
>gi|448300402|ref|ZP_21490403.1| Like-Sm ribonucleoprotein core [Natronorubrum tibetense GA33]
gi|445585834|gb|ELY40123.1| Like-Sm ribonucleoprotein core [Natronorubrum tibetense GA33]
Length = 75
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVT---EYEITAEGRRITKLD 66
P ++++ +G ++ V +K E G L G+D ++N+VLEDVT E E+ AE D
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYDGDLAGYDQHMNLVLEDVTIPLEGEVDAE---TPAED 61
Query: 67 QILLNGNNIAILVP 80
++ G+N+ + P
Sbjct: 62 TTIIRGDNVVSITP 75
>gi|402220188|gb|EJU00260.1| U6 snRNA-associated Sm-like protein LSm7 [Dacryopinax sp. DJM-731
SS1]
Length = 120
Score = 42.4 bits (98), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 1/60 (1%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVP 80
+I V +G +E+ G LKGFD +N+VL+DV E +++E + L ++L G I +L P
Sbjct: 46 RIRVKFQGGREVTGVLKGFDQLMNLVLDDVVE-NLSSEPPKQRNLGLVVLRGPTITLLSP 104
>gi|452822994|gb|EME30008.1| small nuclear ribonucleoprotein E [Galdieria sulphuraria]
Length = 85
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
Query: 5 PSQLL--PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
PS+++ P LI R + ++ IW+ + + + G + GFD Y+N+VL++ E+ +
Sbjct: 3 PSKIMTQPINLIFRFLQNRTKVVIWLYEETNFRIEGRISGFDEYMNLVLDEAVEWNVKKN 62
Query: 59 GRRITKLDQILLNGNNIAILVPGGS 83
R L +ILL G+ I ++ P +
Sbjct: 63 TR--INLGRILLKGDTITLIQPAQT 85
>gi|219129945|ref|XP_002185137.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403316|gb|EEC43269.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 89
Score = 42.4 bits (98), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI I +++V +GD+EL G L G+D ++NM+L DV E + E
Sbjct: 4 PLDLIRLSIDERVYVKCRGDRELRGKLHGYDQHLNMILGDVEETVTSTE 52
>gi|149235353|ref|XP_001523555.1| hypothetical protein LELG_05401 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452964|gb|EDK47220.1| hypothetical protein LELG_05401 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 90
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE--YEITAEGRRI-TKLD 66
P +LI + + V ++G +EL G L+G+D + NMVL D TE Y + + + + K D
Sbjct: 14 PLDLIRFQLDDYVVVKLRGARELYGKLQGYDSHCNMVLSDATETIYGDSPDTKPVKKKTD 73
Query: 67 QILLNGNNIAILVPG 81
+ + G+++ ++ P
Sbjct: 74 MVFVRGDSVILISPA 88
>gi|448361838|ref|ZP_21550451.1| Like-Sm ribonucleoprotein core [Natrialba asiatica DSM 12278]
gi|445649518|gb|ELZ02455.1| Like-Sm ribonucleoprotein core [Natrialba asiatica DSM 12278]
Length = 78
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK---LD 66
P ++++ +G ++ V +K E VG L G+D ++N+VLED T + E T D
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGELGGYDQHMNLVLEDATNAADSDETDTATAESVED 64
Query: 67 QILLNGNNIAILVP 80
++ G+N+ + P
Sbjct: 65 TTIIRGDNVVSITP 78
>gi|324523019|gb|ADY48176.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324523877|gb|ADY48319.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324527206|gb|ADY48760.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324527733|gb|ADY48837.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324528368|gb|ADY48905.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
gi|324528673|gb|ADY48938.1| U6 snRNA-associated Sm-like protein LSm3 [Ascaris suum]
Length = 105
Score = 42.4 bits (98), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+E+ G L FD ++NM+L V E T E
Sbjct: 20 PLDLIRLSLDERIYVKMRNDREVRGRLHAFDQHLNMILSQVEETVTTVE 68
>gi|448313624|ref|ZP_21503337.1| Like-Sm ribonucleoprotein core [Natronolimnobius innermongolicus
JCM 12255]
gi|445597557|gb|ELY51631.1| Like-Sm ribonucleoprotein core [Natronolimnobius innermongolicus
JCM 12255]
Length = 75
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 14/78 (17%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVT-------EYEITAEGRRI 62
P ++++ +G ++ V +K E VG L G+D ++N+VLEDVT E E AE
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLAGYDQHMNLVLEDVTIPVEGGVEDEAPAE---- 60
Query: 63 TKLDQILLNGNNIAILVP 80
D ++ G+N+ + P
Sbjct: 61 ---DTTIIRGDNVVSITP 75
>gi|340720323|ref|XP_003398590.1| PREDICTED: probable small nuclear ribonucleoprotein E-like
[Bombus terrestris]
gi|350408777|ref|XP_003488510.1| PREDICTED: probable small nuclear ribonucleoprotein E-like
[Bombus impatiens]
Length = 94
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + G + GFD Y+N+VL+D EY + + R+ L
Sbjct: 16 PINLIFRYLQNRSRVQVWLFENINLRIEGHIVGFDEYMNLVLDDAEEYNLKTKARK--PL 73
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI ++
Sbjct: 74 GRIMLKGDNITLI 86
>gi|363750444|ref|XP_003645439.1| hypothetical protein Ecym_3115 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889073|gb|AET38622.1| Hypothetical protein Ecym_3115 [Eremothecium cymbalariae
DBVPG#7215]
Length = 108
Score = 42.4 bits (98), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 45/85 (52%), Gaps = 7/85 (8%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
H P LL + R S + + ++ + +++ +K FD + NMVLE+V E EG+
Sbjct: 25 FKHGPMSLLHDAMTSR---SPVIISLRNNHKIIARIKSFDRHCNMVLENVKELWTEKEGK 81
Query: 61 RITK----LDQILLNGNNIAILVPG 81
++T + ++ L G+++ +++
Sbjct: 82 KLTNKERFISKLFLRGDSVIVVLKA 106
>gi|451847192|gb|EMD60500.1| hypothetical protein COCSADRAFT_40145 [Cochliobolus sativus
ND90Pr]
Length = 96
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 10/82 (12%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEG---------R 60
P +L+ CI + V ++GD+EL G L +D + N+VL DV E AE R
Sbjct: 10 PLDLVRLCIDEIVIVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYLAEEDDDDQEPRVR 69
Query: 61 RITKLDQIL-LNGNNIAILVPG 81
I K ++L + G+++ ++ P
Sbjct: 70 TIKKQSEMLFIRGDSVVLIAPA 91
>gi|448338508|ref|ZP_21527554.1| Like-Sm ribonucleoprotein core [Natrinema pallidum DSM 3751]
gi|448345677|ref|ZP_21534566.1| Like-Sm ribonucleoprotein core [Natrinema altunense JCM 12890]
gi|445622626|gb|ELY76076.1| Like-Sm ribonucleoprotein core [Natrinema pallidum DSM 3751]
gi|445633610|gb|ELY86797.1| Like-Sm ribonucleoprotein core [Natrinema altunense JCM 12890]
Length = 75
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEG---RRITKLD 66
P ++++ +G ++ V +K E VG L G+D ++N+VLEDVT I EG D
Sbjct: 5 PLDVLEASLGDRVTVRLKSGDEYVGDLAGYDQHMNLVLEDVT---IPVEGNVEEEPPAED 61
Query: 67 QILLNGNNIAILVP 80
++ G+N+ + P
Sbjct: 62 TTIIRGDNVVSITP 75
>gi|378732523|gb|EHY58982.1| small nuclear ribonucleoprotein G [Exophiala dermatitidis
NIH/UT8656]
Length = 80
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 20 SKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
+++V + G+++++G L+G+DV++N+VL+D E + E R L + + GN++ +L
Sbjct: 14 KRLFVQLNGNRKVIGVLRGYDVFLNIVLDDAVEEKAGGERER---LGMVAIRGNSVVML 69
>gi|116753460|ref|YP_842578.1| like-Sm ribonucleoprotein, core [Methanosaeta thermophila PT]
gi|116664911|gb|ABK13938.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
thermophila PT]
Length = 74
Score = 42.4 bits (98), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELV--GTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
+ P++ + IG+KI V MKG + V G L D Y+N+ L + E G R L
Sbjct: 1 MYPNKKVQSLIGTKIQVEMKGSQRHVLEGILNSVDEYLNLHLLETVE---IVNGERTRSL 57
Query: 66 DQILLNGNNIAILVPG 81
++L GNNI ++ P
Sbjct: 58 GSVILRGNNIILISPA 73
>gi|297850550|ref|XP_002893156.1| hypothetical protein ARALYDRAFT_472357 [Arabidopsis lyrata subsp.
lyrata]
gi|297338998|gb|EFH69415.1| hypothetical protein ARALYDRAFT_472357 [Arabidopsis lyrata subsp.
lyrata]
Length = 98
Score = 42.4 bits (98), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI I +I+V ++ D+EL G L FD ++NM+L DV E T E
Sbjct: 12 PLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTVE 60
>gi|260947516|ref|XP_002618055.1| hypothetical protein CLUG_01514 [Clavispora lusitaniae ATCC 42720]
gi|238847927|gb|EEQ37391.1| hypothetical protein CLUG_01514 [Clavispora lusitaniae ATCC 42720]
Length = 130
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE--YEITAEGRRITKLDQ 67
P +LI + + V ++G +E+ G L+G+D + NMVL D E Y E + K +
Sbjct: 55 PLDLIRYQLDESVLVKLRGAREMKGKLQGYDSHCNMVLSDAQETIYGENEEDTVVKKTEM 114
Query: 68 ILLNGNNIAILVPG 81
+ + G+++ ++ P
Sbjct: 115 VFVRGDSVILISPS 128
>gi|238492871|ref|XP_002377672.1| small nuclear ribonucleoprotein (LSM7), putative [Aspergillus
flavus NRRL3357]
gi|317156803|ref|XP_003190769.1| U6 snRNA-associated Sm-like protein LSm7 [Aspergillus oryzae RIB40]
gi|220696166|gb|EED52508.1| small nuclear ribonucleoprotein (LSM7), putative [Aspergillus
flavus NRRL3357]
Length = 133
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK-LDQILLNG 72
+ + + ++ V G +E+VGTLKGFD +N+VL+DV E EG T+ L I+ G
Sbjct: 50 LSKYMDKEVRVKFNGGREVVGTLKGFDQLMNLVLDDVKESMRDDEGNENTRSLGLIVARG 109
Query: 73 NNIAILVP 80
I ++ P
Sbjct: 110 TIIVLISP 117
>gi|330918430|ref|XP_003298219.1| hypothetical protein PTT_08854 [Pyrenophora teres f. teres 0-1]
gi|311328701|gb|EFQ93672.1| hypothetical protein PTT_08854 [Pyrenophora teres f. teres 0-1]
Length = 96
Score = 42.4 bits (98), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEG---------R 60
P +L+ CI + V ++GD+EL G L +D + N+VL DV E AE R
Sbjct: 10 PLDLVRLCIDEVVIVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYMAEEEDDDQEPRVR 69
Query: 61 RITKLDQILL-NGNNIAILVPG 81
+ K ++L G+++ ++ P
Sbjct: 70 TVKKQSEMLFVRGDSVVLIAPA 91
>gi|432858806|ref|XP_004068948.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Oryzias
latipes]
Length = 102
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+EL G L +D ++NM+L DV E T E
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVE 65
>gi|290989375|ref|XP_002677313.1| predicted protein [Naegleria gruberi]
gi|284090920|gb|EFC44569.1| predicted protein [Naegleria gruberi]
Length = 95
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 34/49 (69%), Gaps = 1/49 (2%)
Query: 5 PSQLL-PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P+ +L P +LI + ++++ +KGD+EL GTL +D ++NMVL +V E
Sbjct: 3 PTTVLEPLDLIRLSLDEQVYIKLKGDRELRGTLHAYDQHLNMVLGNVEE 51
>gi|171694560|ref|XP_001912204.1| hypothetical protein [Podospora anserina S mat+]
gi|170947522|emb|CAP59683.1| unnamed protein product [Podospora anserina S mat+]
Length = 85
Score = 42.4 bits (98), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + +++V + G ++++G L+G+DV++N+V++D E +G KL +++ GN
Sbjct: 8 LKKYLDKRLFVQLNGSRKVIGVLRGYDVFLNIVMDDAVE---EKDGGEKVKLGMVVIRGN 64
Query: 74 NIAIL 78
++ +L
Sbjct: 65 SVVML 69
>gi|389584836|dbj|GAB67567.1| small nuclear ribonucleoprotein E [Plasmodium cynomolgi strain B]
Length = 94
Score = 42.4 bits (98), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVP 80
+IW+ K D + G + GFD Y+NMVL++ E + R+ L +ILL G+ I +++
Sbjct: 30 QIWLYDKPDTRIEGKILGFDEYMNMVLDESAEVSVKKNTRK--DLGKILLKGDTITLIME 87
Query: 81 GGSPDPE 87
+ E
Sbjct: 88 AKKAEQE 94
>gi|116182940|ref|XP_001221319.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88186395|gb|EAQ93863.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 83
Score = 42.0 bits (97), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + +++V + G ++++G L+G+DV++N+VL+D E + E KL +++ GN
Sbjct: 8 LKKYLDKRLFVQLNGSRKVLGVLRGYDVFLNIVLDDAVEEKDNGEK---VKLGMVVIRGN 64
Query: 74 NIAIL 78
++ +L
Sbjct: 65 SVVML 69
>gi|452823867|gb|EME30874.1| U6 snRNA-associated Sm-like protein LSm3 [Galdieria sulphuraria]
Length = 90
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 31/49 (63%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I V ++GD+EL G L+ FD ++N+VL DV E + E
Sbjct: 5 PLDLILLALDEEILVKLRGDRELRGKLQAFDQHMNLVLSDVEETALKVE 53
>gi|16081975|ref|NP_394385.1| hypothetical protein Ta0927 [Thermoplasma acidophilum DSM 1728]
gi|10640204|emb|CAC12056.1| hypothetical protein [Thermoplasma acidophilum]
Length = 67
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 4/69 (5%)
Query: 12 ELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLN 71
++++ + ++ +++K ++ L G L GFD Y+NMVL+DV E KL +++
Sbjct: 2 KMLEESVNKRVSLLLKDNRVLEGVLTGFDEYMNMVLDDVDENSENVS----RKLGTVVVR 57
Query: 72 GNNIAILVP 80
G+N+ +VP
Sbjct: 58 GSNVVRIVP 66
>gi|343427570|emb|CBQ71097.1| related to snRNP protein [Sporisorium reilianum SRZ2]
Length = 143
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 3 HNPSQLLPSELI---DRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEG 59
+ PS+ E I + + KI V G +E+ GTLKGFD +N+V+++VTE EG
Sbjct: 45 NTPSERPKKEAILDLSKYMDQKIRVKFAGGREVFGTLKGFDQLMNLVMDEVTESLRDDEG 104
Query: 60 R---RITKLDQILLNGNNIAILVP 80
+ L ++L G + ++ P
Sbjct: 105 NVTDKTRNLGLVVLRGTALTVINP 128
>gi|291239206|ref|XP_002739490.1| PREDICTED: Lsm3 protein-like [Saccoglossus kowalevskii]
Length = 103
Score = 42.0 bits (97), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+EL G L +D ++NM+L DV E T E
Sbjct: 16 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVE 64
>gi|365991154|ref|XP_003672406.1| hypothetical protein NDAI_0J02710 [Naumovozyma dairenensis CBS
421]
gi|343771181|emb|CCD27163.1| hypothetical protein NDAI_0J02710 [Naumovozyma dairenensis CBS
421]
Length = 85
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 48/85 (56%), Gaps = 12/85 (14%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE--YEITAEG-----RRI 62
P +L+ + +++V ++G + LVGTL+ FD + N+VL D E YE+ EG R
Sbjct: 6 PLDLLKLNLDEQVYVKLRGARSLVGTLQAFDSHCNIVLSDAIETIYELDDEGDLQSVERN 65
Query: 63 TKLDQILLNGNNIAILVPGGSPDPE 87
+++ I + G+ + ++ +PD E
Sbjct: 66 SEM--IFVRGDTVTLIT---TPDEE 85
>gi|225707460|gb|ACO09576.1| U6 snRNA-associated Sm-like protein LSm3 [Osmerus mordax]
Length = 104
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+EL G L +D ++NM+L DV E T E
Sbjct: 19 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVE 67
>gi|410930335|ref|XP_003978554.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Takifugu rubripes]
gi|47206420|emb|CAF94178.1| unnamed protein product [Tetraodon nigroviridis]
Length = 102
Score = 42.0 bits (97), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+EL G L +D ++NM+L DV E T E
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVE 65
>gi|57640911|ref|YP_183389.1| small nuclear ribonucleoprotein [Thermococcus kodakarensis KOD1]
gi|73919284|sp|Q5JIE0.1|RUXX_PYRKO RecName: Full=Putative snRNP Sm-like protein
gi|57159235|dbj|BAD85165.1| snRNP component, Sm-like protein [Thermococcus kodakarensis KOD1]
Length = 76
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++I + + + V++K E G L G+D+++N+VL D E+ +G + K +I+
Sbjct: 5 PLDVIHKSLDKDVLVLLKRGNEFRGKLIGYDIHLNVVLADA---ELIQDGEVVKKYGKIV 61
Query: 70 LNGNNIAILVP 80
+ G+N+ L P
Sbjct: 62 IRGDNVLALSP 72
>gi|348514181|ref|XP_003444619.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Oreochromis niloticus]
gi|348520372|ref|XP_003447702.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Oreochromis niloticus]
Length = 102
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+EL G L +D ++NM+L DV E T E
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVE 65
>gi|429216595|ref|YP_007174585.1| small nuclear ribonucleoprotein [Caldisphaera lagunensis DSM
15908]
gi|429133124|gb|AFZ70136.1| small nuclear ribonucleoprotein [Caldisphaera lagunensis DSM
15908]
Length = 79
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 18 IGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI 77
+ S + V MKG++E+ G L +D ++N++LE E EG+ L +LL G+N+
Sbjct: 19 LNSSVLVKMKGNREVKGILTSYDQHLNLILEKAEEL----EGKVSRPLGLVLLRGDNVIA 74
Query: 78 LVPGG 82
+ P G
Sbjct: 75 VSPAG 79
>gi|393228928|gb|EJD36561.1| LSM-domain-containing protein [Auricularia delicata TFB-10046
SS5]
Length = 121
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P +LI + +++V ++GD+EL G L +D ++NM++ DV E
Sbjct: 11 PFDLIRLSLNERVFVKLRGDRELTGVLHAYDGHMNMIMSDVEE 53
>gi|326678810|ref|XP_003201179.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform
1 [Danio rerio]
gi|326678812|ref|XP_003201180.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform
2 [Danio rerio]
Length = 102
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+EL G L +D ++NM+L DV E T E
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVE 65
>gi|150866473|ref|XP_001386093.2| hypothetical protein PICST_63621 [Scheffersomyces stipitis CBS
6054]
gi|149387729|gb|ABN68064.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 88
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 43/79 (54%), Gaps = 2/79 (2%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITA--EGRR 61
Q P +LI + + V ++G +E+ G L+G+D + NMVL + EY +A E
Sbjct: 7 ESQQQEPLDLIRFQLDEFVLVKLRGAREMKGRLQGYDSHCNMVLSEAEEYIYSAGDEETV 66
Query: 62 ITKLDQILLNGNNIAILVP 80
+ K + + + G+++ ++ P
Sbjct: 67 VKKTEMVFVRGDSVILISP 85
>gi|260822318|ref|XP_002606549.1| hypothetical protein BRAFLDRAFT_247418 [Branchiostoma floridae]
gi|229291892|gb|EEN62559.1| hypothetical protein BRAFLDRAFT_247418 [Branchiostoma floridae]
Length = 98
Score = 42.0 bits (97), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+EL G L +D ++NM+L DV E T E
Sbjct: 11 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVE 59
>gi|380023740|ref|XP_003695670.1| PREDICTED: probable small nuclear ribonucleoprotein E-like [Apis
florea]
Length = 129
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + G + GFD Y+N+VL+D EY + + R+ L
Sbjct: 51 PINLIFRYLQNRSRVQVWLFENINLRIEGHIVGFDEYMNLVLDDAEEYHLKTKNRK--PL 108
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI ++
Sbjct: 109 GRIMLKGDNITLI 121
>gi|284166187|ref|YP_003404466.1| Sm ribonucleoprotein-like protein [Haloterrigena turkmenica DSM
5511]
gi|448390930|ref|ZP_21566397.1| Sm ribonucleoprotein-like protein [Haloterrigena salina JCM
13891]
gi|284015842|gb|ADB61793.1| Like-Sm ribonucleoprotein core [Haloterrigena turkmenica DSM
5511]
gi|445666518|gb|ELZ19179.1| Sm ribonucleoprotein-like protein [Haloterrigena salina JCM
13891]
Length = 74
Score = 42.0 bits (97), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++++ +G ++ V +K E VG L G+D ++N+VLEDVT E + + D +
Sbjct: 5 PLDVLEASLGERVTVRLKSGGEYVGDLAGYDQHMNLVLEDVTIPEAGVDEEAPVE-DTTI 63
Query: 70 LNGNNIAILVP 80
+ G+N+ + P
Sbjct: 64 IRGDNVVSITP 74
>gi|449067225|ref|YP_007434307.1| hypothetical protein SacN8_05970 [Sulfolobus acidocaldarius N8]
gi|449069496|ref|YP_007436577.1| hypothetical protein SacRon12I_05965 [Sulfolobus acidocaldarius
Ron12/I]
gi|449035733|gb|AGE71159.1| hypothetical protein SacN8_05970 [Sulfolobus acidocaldarius N8]
gi|449038004|gb|AGE73429.1| hypothetical protein SacRon12I_05965 [Sulfolobus acidocaldarius
Ron12/I]
Length = 73
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 12 ELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLN 71
+++ +GS + V +KG+K + GTLK +D+++N+VLE+ EI +G K+ I++
Sbjct: 7 KVLAESLGSTVLVKLKGEKIVRGTLKSYDMHMNLVLEN--SEEIMNDG-STRKVGTIVIR 63
Query: 72 GNNIAILVP 80
G+N+ ++ P
Sbjct: 64 GDNVILVSP 72
>gi|387914480|gb|AFK10849.1| LSM3-like protein [Callorhinchus milii]
gi|392883596|gb|AFM90630.1| LSM3-like protein, U6 small nuclear RNA associated [Callorhinchus
milii]
gi|392883672|gb|AFM90668.1| LSM3-like protein, U6 small nuclear RNA associated [Callorhinchus
milii]
gi|392884122|gb|AFM90893.1| LSM3-like protein, U6 small nuclear RNA associated [Callorhinchus
milii]
Length = 102
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+EL G L +D ++NM+L DV E T E
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVE 65
>gi|257815604|gb|ACV70140.1| small nuclear ribonucleoprotein E [Jatropha curcas]
Length = 88
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + SK IW+ + D + G + GFD Y+N VL+D E + + R+ L
Sbjct: 13 PINLIFRFLQSKARIQIWLFEQKDLRIEGRIIGFDEYMNSVLDDAEEVNVKKKPRK--SL 70
Query: 66 DQILLNGNNIAILVPGGS 83
I G+NI +++ G
Sbjct: 71 GGIFFKGDNIILMMNSGK 88
>gi|28948591|pdb|1M8V|A Chain A, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948592|pdb|1M8V|B Chain B, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948593|pdb|1M8V|C Chain C, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948594|pdb|1M8V|D Chain D, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948595|pdb|1M8V|E Chain E, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948596|pdb|1M8V|F Chain F, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948597|pdb|1M8V|G Chain G, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948598|pdb|1M8V|H Chain H, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948599|pdb|1M8V|I Chain I, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948600|pdb|1M8V|J Chain J, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948601|pdb|1M8V|K Chain K, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948602|pdb|1M8V|L Chain L, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948603|pdb|1M8V|M Chain M, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
gi|28948604|pdb|1M8V|N Chain N, Structure Of Pyrococcus Abyssii Sm Protein In Complex
With A Uridine Heptamer
Length = 77
Score = 42.0 bits (97), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++I R + + VI+K E G L G+D+++N+VL D E+ +G + + +I+
Sbjct: 7 PLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADA---EMIQDGEVVKRYGKIV 63
Query: 70 LNGNNIAILVP 80
+ G+N+ + P
Sbjct: 64 IRGDNVLAISP 74
>gi|393216136|gb|EJD01627.1| Sm-like ribonucleo protein [Fomitiporia mediterranea MF3/22]
Length = 96
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 11/82 (13%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY-------EITAEGRRI 62
P +LI + +++V ++GD+EL G L +D ++N++L DV E E RI
Sbjct: 11 PFDLIRLSLNERVFVKLRGDRELNGVLHAYDGHMNLILSDVEETIMLVDSNEAAPPAGRI 70
Query: 63 T----KLDQILLNGNNIAILVP 80
K+D + + G+ + ++ P
Sbjct: 71 NVAKRKMDMLFVRGDGVILVSP 92
>gi|347522771|ref|YP_004780341.1| Like-Sm ribonucleoprotein core [Pyrolobus fumarii 1A]
gi|343459653|gb|AEM38089.1| Like-Sm ribonucleoprotein core [Pyrolobus fumarii 1A]
Length = 75
Score = 42.0 bits (97), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 12 ELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLN 71
+L++ +GS + V ++GD + G LK FD ++N+VLE+ E + R KL +++
Sbjct: 7 KLLEENLGSIVLVKLRGDIVVRGKLKSFDQHLNLVLEEAEEIKSDGSTR---KLGTLVIR 63
Query: 72 GNNIAILVP 80
G+N+ ++ P
Sbjct: 64 GDNVVLISP 72
>gi|118575248|ref|YP_874991.1| small nuclear ribonucleoprotein [Cenarchaeum symbiosum A]
gi|118193769|gb|ABK76687.1| small nuclear ribonucleoprotein [Cenarchaeum symbiosum A]
Length = 78
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
Query: 12 ELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLN 71
+++D I + + +KG K + G L GFD ++N++LE E + E R L I++
Sbjct: 8 KVLDESINKVVLIKLKGGKAIRGNLLGFDQHMNLLLESSEEIPVEGETR---TLGTIVVR 64
Query: 72 GNNIAILVP 80
G+N+ I+ P
Sbjct: 65 GDNVVIISP 73
>gi|225717088|gb|ACO14390.1| U6 snRNA-associated Sm-like protein LSm3 [Esox lucius]
Length = 102
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+EL G L +D ++NM+L DV E T E
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTVE 65
>gi|310798750|gb|EFQ33643.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 84
Score = 42.0 bits (97), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + +++V + G ++++G L+G+DV++N+VL++ E EG +L +++ GN
Sbjct: 8 LKKYLDKRLFVQLNGSRKVIGVLRGYDVFLNIVLDEAVE---EKEGGEKVRLGMVVIRGN 64
Query: 74 NIAIL 78
++ +L
Sbjct: 65 SVVML 69
>gi|403170432|ref|XP_003329769.2| small nuclear ribonucleoprotein G [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
gi|375168717|gb|EFP85350.2| small nuclear ribonucleoprotein G [Puccinia graminis f. sp.
tritici CRL 75-36-700-3]
Length = 78
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + ++++ ++G+++L G L+GFD+++N+VL++ E + EG K+ I++ GN
Sbjct: 9 LKKYMDKRLFLNLQGNRKLSGVLRGFDIFLNLVLDEAQEESL--EGGEKRKMGLIVIRGN 66
Query: 74 NIA 76
+++
Sbjct: 67 SVS 69
>gi|361126108|gb|EHK98124.1| putative small nuclear ribonucleoprotein G [Glarea lozoyensis
74030]
Length = 85
Score = 42.0 bits (97), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + +++V + G ++++G L+G+DV++N+VL+D E +G +L +++ GN
Sbjct: 8 LKKYLDKRLFVQLNGSRKVIGVLRGYDVFLNIVLDDAVE---EKDGGEKVRLGMVVIRGN 64
Query: 74 NIAIL 78
++ +L
Sbjct: 65 SVVML 69
>gi|328858783|gb|EGG07894.1| hypothetical protein MELLADRAFT_35186 [Melampsora larici-populina
98AG31]
Length = 95
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 29/41 (70%)
Query: 12 ELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
+LI + ++ + ++GD+E+ GTL +D ++NMVL DVTE
Sbjct: 2 DLIRLSLSERVLIKLRGDREVTGTLHAYDGHMNMVLSDVTE 42
>gi|448317324|ref|ZP_21506880.1| Like-Sm ribonucleoprotein core [Natronococcus jeotgali DSM 18795]
gi|445603844|gb|ELY57797.1| Like-Sm ribonucleoprotein core [Natronococcus jeotgali DSM 18795]
Length = 75
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQI- 68
P ++++ +G ++ V +K E VG L G+D ++N+VLEDV+ A R + D +
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLAGYDQHMNLVLEDVSR----AADREVEDSDPVE 60
Query: 69 ---LLNGNNIAILVP 80
++ G+N+ + P
Sbjct: 61 DTTIIRGDNVVSITP 75
>gi|386875009|ref|ZP_10117213.1| LSM domain protein [Candidatus Nitrosopumilus salaria BD31]
gi|386807169|gb|EIJ66584.1| LSM domain protein [Candidatus Nitrosopumilus salaria BD31]
Length = 74
Score = 42.0 bits (97), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 12 ELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLN 71
+++D I + + +KG K + GTL GFD ++N++L+ + EI AEG L I++
Sbjct: 4 KVLDESIDQVVLIKLKGSKTIRGTLLGFDQHMNLLLD--SSEEIPAEGDS-KSLGTIVVR 60
Query: 72 GNNIAILVP 80
G+N+ ++ P
Sbjct: 61 GDNVVMISP 69
>gi|14520857|ref|NP_126332.1| small nuclear ribonucleoprotein [Pyrococcus abyssi GE5]
gi|10720266|sp|Q9V0Y8.1|RUXX_PYRAB RecName: Full=Putative snRNP Sm-like protein
gi|27573606|pdb|1H64|1 Chain 1, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573607|pdb|1H64|2 Chain 2, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573608|pdb|1H64|A Chain A, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573609|pdb|1H64|B Chain B, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573610|pdb|1H64|C Chain C, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573611|pdb|1H64|D Chain D, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573612|pdb|1H64|E Chain E, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573613|pdb|1H64|F Chain F, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573614|pdb|1H64|G Chain G, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573615|pdb|1H64|H Chain H, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573616|pdb|1H64|I Chain I, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573617|pdb|1H64|J Chain J, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573618|pdb|1H64|K Chain K, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573619|pdb|1H64|L Chain L, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573620|pdb|1H64|M Chain M, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573621|pdb|1H64|N Chain N, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573622|pdb|1H64|O Chain O, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573623|pdb|1H64|P Chain P, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573624|pdb|1H64|Q Chain Q, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573625|pdb|1H64|R Chain R, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573626|pdb|1H64|S Chain S, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573627|pdb|1H64|T Chain T, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573628|pdb|1H64|U Chain U, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573629|pdb|1H64|V Chain V, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573630|pdb|1H64|W Chain W, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573631|pdb|1H64|X Chain X, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573632|pdb|1H64|Y Chain Y, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|27573633|pdb|1H64|Z Chain Z, Crystal Structure Of The Sm-Related Protein Of P. Abyssi
The Biological Unit Is A Heptamer
gi|5458074|emb|CAB49563.1| Heptameric Sm/Lsm protein [Pyrococcus abyssi GE5]
gi|380741401|tpe|CCE70035.1| TPA: small nuclear ribonucleoprotein [Pyrococcus abyssi GE5]
Length = 75
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++I R + + VI+K E G L G+D+++N+VL D E+ +G + + +I+
Sbjct: 5 PLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADA---EMIQDGEVVKRYGKIV 61
Query: 70 LNGNNIAILVP 80
+ G+N+ + P
Sbjct: 62 IRGDNVLAISP 72
>gi|118781504|ref|XP_311506.3| AGAP010440-PA [Anopheles gambiae str. PEST]
gi|116129981|gb|EAA07131.3| AGAP010440-PA [Anopheles gambiae str. PEST]
Length = 90
Score = 42.0 bits (97), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + G + GFD Y+N+VL++ E+ I + RR +L
Sbjct: 15 PINLIFRYLQNRSRVQVWLYENTHLRIEGHIVGFDEYMNLVLDEAEEFNIKKQTRR--QL 72
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI ++
Sbjct: 73 GRIMLKGDNITLI 85
>gi|299740998|ref|XP_001834148.2| hypothetical protein CC1G_09105 [Coprinopsis cinerea
okayama7#130]
gi|298404507|gb|EAU87644.2| hypothetical protein CC1G_09105 [Coprinopsis cinerea
okayama7#130]
Length = 107
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + KI V G +E++G LKG+D +N+VL++V E + + L ++L G
Sbjct: 26 LSKYVNEKIRVKFTGGREVIGVLKGYDQLLNLVLDEVEEEVSASNPYKKRSLGLVVLRGP 85
Query: 74 NIAILVP 80
I +L P
Sbjct: 86 TITLLSP 92
>gi|400600902|gb|EJP68570.1| LSM domain-containing protein [Beauveria bassiana ARSEF 2860]
Length = 255
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK-LDQILLNG 72
+ + + +I V G +E++GTLKGFD +N+VL+DV E EG T+ L +++ G
Sbjct: 171 LTKYMDKQITVKFNGGREVMGTLKGFDALMNLVLDDVQETVRDEEGNESTRPLGLVVVRG 230
Query: 73 NNIAILVP 80
+ ++ P
Sbjct: 231 TLLVLISP 238
>gi|147921633|ref|YP_684550.1| small nuclear ribonucleoprotein [Methanocella arvoryzae MRE50]
gi|121685694|sp|Q0W8R9.1|RUXX_UNCMA RecName: Full=Putative snRNP Sm-like protein
gi|110619946|emb|CAJ35224.1| putative small nuclear ribonucleoprotein (snRNP) Sm-like protein
[Methanocella arvoryzae MRE50]
Length = 72
Score = 42.0 bits (97), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++++ + S + V +KG +E G L+G+D+++N+VL++ E + R KL I+
Sbjct: 5 PLDVLNEALNSPVIVRLKGGREFRGELQGYDMHMNLVLDNAEELKENEASR---KLGTII 61
Query: 70 LNGNNIAILVP 80
+ G+ + + P
Sbjct: 62 VRGDTVVYVSP 72
>gi|440302928|gb|ELP95234.1| small nuclear ribonucleoprotein G, putative [Entamoeba invadens
IP1]
Length = 88
Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P + + +I+V + ++ ++G L+GFD Y+N+VL+D + ++I +L QIL
Sbjct: 11 PKPELKHYMEKRIYVKIHCNRAIIGVLRGFDEYLNLVLDDAFDASHPENPQKI-QLGQIL 69
Query: 70 LNGNNIAIL 78
+ GN++ L
Sbjct: 70 IRGNSVLSL 78
>gi|393909110|gb|EJD75322.1| hypothetical protein LOAG_17508 [Loa loa]
Length = 103
Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+E+ G L FD ++NM+L V E T E
Sbjct: 18 PLDLIRLSLDERIYVKMRNDREVRGRLHAFDQHLNMILSQVEETVTTVE 66
>gi|156096492|ref|XP_001614280.1| small nuclear ribonucleoprotein E [Plasmodium vivax Sal-1]
gi|148803154|gb|EDL44553.1| small nuclear ribonucleoprotein E, putative [Plasmodium vivax]
Length = 94
Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 2/67 (2%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVP 80
+IW+ K D + G + GFD Y+NMVL++ E + R+ L +ILL G+ I +++
Sbjct: 30 QIWLYDKPDTRIEGKILGFDEYMNMVLDESAEVSLKKNTRK--DLGKILLKGDTITLIME 87
Query: 81 GGSPDPE 87
+ E
Sbjct: 88 AKKAEQE 94
>gi|336455074|ref|NP_001229595.1| small nuclear ribonucleoprotein polypeptide E-like
[Strongylocentrotus purpuratus]
Length = 99
Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 10/85 (11%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ IW+ + + + G + GFD Y+N+VL+D EY + R+ L
Sbjct: 15 PINLIFRYLQNRSRVQIWLYDQSNLRIEGHIIGFDEYMNVVLDDAEEYHKKNKTRK--PL 72
Query: 66 DQILLNGNNIAILV----PGGSPDP 86
+ILL G+NI ++ G+ +P
Sbjct: 73 GRILLKGDNITLIQNVQEAAGAAEP 97
>gi|226443270|ref|NP_001139841.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
gi|221219250|gb|ACM08286.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
gi|221219990|gb|ACM08656.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
gi|221221030|gb|ACM09176.1| U6 snRNA-associated Sm-like protein LSm3 [Salmo salar]
Length = 102
Score = 42.0 bits (97), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+EL G L +D ++NM+L DV E T E
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLNAYDQHLNMILGDVEETVTTVE 65
>gi|282164954|ref|YP_003357339.1| putative small nucleolar RNP Sm protein [Methanocella paludicola
SANAE]
gi|282157268|dbj|BAI62356.1| putative small nucleolar RNP Sm protein [Methanocella paludicola
SANAE]
Length = 72
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++++ + S + V +KG +E G L+G+D+++N+VL++ E + E + KL I+
Sbjct: 5 PLDVLNDALNSPVIVRLKGGREFRGELQGYDMHMNLVLDNAEELKENEESK---KLGTII 61
Query: 70 LNGNNIAILVP 80
+ G+ + + P
Sbjct: 62 VRGDTVVYVSP 72
>gi|196001475|ref|XP_002110605.1| hypothetical protein TRIADDRAFT_22667 [Trichoplax adhaerens]
gi|190586556|gb|EDV26609.1| hypothetical protein TRIADDRAFT_22667 [Trichoplax adhaerens]
Length = 88
Score = 41.6 bits (96), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P +I R + +K IW+ + + + G + GFD Y+N+VL+D E I RR +
Sbjct: 14 PINVIFRFLQNKTRVQIWLYEQTNTRIEGYILGFDEYMNLVLDDAAEVSIKNNQRR--PI 71
Query: 66 DQILLNGNNIAIL 78
+ILL G+NI+++
Sbjct: 72 GRILLKGDNISLI 84
>gi|453087554|gb|EMF15595.1| Sm-like ribonucleo protein [Mycosphaerella populorum SO2202]
Length = 95
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 7/81 (8%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY------EITAEGRRIT 63
P +L+ + ++V ++GD+EL G L +D + N+VL DVTE E R +
Sbjct: 15 PLDLVRLSLNETVFVKLRGDRELAGRLHAYDSHCNLVLGDVTETVYVWDDEDEDNVRAVK 74
Query: 64 KLDQILL-NGNNIAILVPGGS 83
K ++L G+++ ++ P S
Sbjct: 75 KQSEMLFVRGDSVVLISPQQS 95
>gi|15218164|ref|NP_173542.1| U6 snRNA-associated Sm-like protein [Arabidopsis thaliana]
gi|8920641|gb|AAF81363.1|AC036104_12 Contains similarity to Lsm3 protein from Homo sapiens gb|AJ238095
and contains a conserved Sm protein PF|01423 motif. EST
gb|AI998441 comes from this gene [Arabidopsis thaliana]
gi|12248017|gb|AAG50100.1|AF334722_1 unknown protein [Arabidopsis thaliana]
gi|332191952|gb|AEE30073.1| U6 snRNA-associated Sm-like protein [Arabidopsis thaliana]
Length = 97
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI I +I+V ++ D+EL G L FD ++NM+L DV E T E
Sbjct: 12 PLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIE 60
>gi|393247771|gb|EJD55278.1| Sm-like ribonucleo protein [Auricularia delicata TFB-10046 SS5]
Length = 136
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 13 LIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNG 72
L+D C+ K+ V+++ ++LVG L+ +D + N+VLED E + + L+ G
Sbjct: 13 LVD-CVDKKMLVVLRDGRKLVGVLRSYDQFANLVLEDTIERFYHGQNYGEVRRGVFLIRG 71
Query: 73 NNIAIL 78
N+ +L
Sbjct: 72 ENVVLL 77
>gi|324567919|gb|ADY49901.1| U6 snRNA-associated Sm-like protein LSm3, partial [Ascaris suum]
Length = 76
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+E+ G L FD ++NM+L V E T E
Sbjct: 20 PLDLIRLSLDERIYVKMRNDREVRGRLHAFDQHLNMILSQVEETVTTVE 68
>gi|110743008|dbj|BAE99397.1| hypothetical protein [Arabidopsis thaliana]
Length = 96
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI I +I+V ++ D+EL G L FD ++NM+L DV E T E
Sbjct: 11 PLDLIRLSIEERIYVKLRSDRELRGKLHAFDQHLNMILGDVEEVITTIE 59
>gi|328769008|gb|EGF79053.1| hypothetical protein BATDEDRAFT_90185 [Batrachochytrium
dendrobatidis JAM81]
Length = 105
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P +L+ + +I+V M+GD+EL G L +D ++NMVL +V E
Sbjct: 21 PLDLVRLSLDERIYVKMRGDRELRGKLHAYDQHMNMVLGEVEE 63
>gi|284174982|ref|ZP_06388951.1| small nuclear riboprotein protein (snRNP-2) [Sulfolobus
solfataricus 98/2]
gi|384434272|ref|YP_005643630.1| Sm ribonucleoprotein-like protein [Sulfolobus solfataricus 98/2]
gi|261602426|gb|ACX92029.1| Like-Sm ribonucleoprotein core [Sulfolobus solfataricus 98/2]
Length = 76
Score = 41.6 bits (96), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 22 IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVP 80
+ V +KG+KE+ G L+ +D ++N+VL D E + G+ KL I++ G+N+ ++ P
Sbjct: 17 VLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGK---KLGTIVIRGDNVILISP 72
>gi|426195723|gb|EKV45652.1| hypothetical protein AGABI2DRAFT_72502 [Agaricus bisporus var.
bisporus H97]
Length = 78
Score = 41.6 bits (96), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 41/63 (65%), Gaps = 3/63 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + K++V ++G +++ GTL+G+D+++N+V++D E A+ I Q+++ GN
Sbjct: 9 LKKYMDKKLFVHLQGGRKVSGTLRGYDLFLNLVIDDAIEETTPAQKHPI---GQVVIRGN 65
Query: 74 NIA 76
++
Sbjct: 66 SVT 68
>gi|452987088|gb|EME86844.1| hypothetical protein MYCFIDRAFT_49442 [Pseudocercospora fijiensis
CIRAD86]
Length = 94
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE--YEITAEG----RRIT 63
P +L+ + ++V ++GD+EL G L +D + N+VL DVTE Y + E R +
Sbjct: 15 PLDLVRLSLNETVFVKLRGDRELQGRLHAYDSHCNLVLGDVTETVYLVDEEDEDNVRTVK 74
Query: 64 KLDQILL-NGNNIAILVP 80
K ++L G+++ ++ P
Sbjct: 75 KQSEMLFVRGDSVVLISP 92
>gi|401884862|gb|EJT49000.1| u6 snRNA-associated sm-like protein lsm6 [Trichosporon asahii
var. asahii CBS 2479]
gi|406694421|gb|EKC97748.1| u6 snRNA-associated sm-like protein lsm6 [Trichosporon asahii
var. asahii CBS 8904]
Length = 91
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 3 HNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRI 62
P+ PS+ + +G K+ V + + G L D Y+N+ LE+ E+ A+GR I
Sbjct: 13 QGPAAGSPSDFLKNIVGKKVKVRIGSGIDYHGLLTCLDGYMNVALEETEEW---AQGRLI 69
Query: 63 TKLDQILLNGNNI 75
K L GNN+
Sbjct: 70 AKYGDTFLRGNNV 82
>gi|448329423|ref|ZP_21518722.1| Like-Sm ribonucleoprotein core [Natrinema versiforme JCM 10478]
gi|445613929|gb|ELY67615.1| Like-Sm ribonucleoprotein core [Natrinema versiforme JCM 10478]
Length = 75
Score = 41.6 bits (96), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEG---RRITKLD 66
P ++++ +G ++ V +K E +G L G+D ++N+VLEDVT I EG D
Sbjct: 5 PLDVLEASLGERVSVRLKSGDEYIGELAGYDQHMNLVLEDVT---IPVEGGVEEETPVED 61
Query: 67 QILLNGNNIAILVP 80
++ G+N+ + P
Sbjct: 62 TTIIRGDNVVSITP 75
>gi|348586080|ref|XP_003478798.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cavia
porcellus]
Length = 92
Score = 41.6 bits (96), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + + G + GFD Y+N+VL+D E + R+ +L
Sbjct: 17 PINLIFRYLQNRSQIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEETHSRTKSRK--QL 74
Query: 66 DQILLNGNNIAIL 78
QI+L G+NI +L
Sbjct: 75 GQIMLKGDNITLL 87
>gi|395330396|gb|EJF62779.1| like-Sm ribonucleo protein [Dichomitus squalens LYAD-421 SS1]
Length = 97
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P +LI + +++V ++GD+EL G L +D ++N++L DV E
Sbjct: 11 PFDLIRLSLSERVFVKLRGDRELTGVLHAYDGHMNLILSDVEE 53
>gi|366998846|ref|XP_003684159.1| hypothetical protein TPHA_0B00530 [Tetrapisispora phaffii CBS
4417]
gi|357522455|emb|CCE61725.1| hypothetical protein TPHA_0B00530 [Tetrapisispora phaffii CBS
4417]
Length = 85
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 4/73 (5%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE--YE-ITAEGR-RITKL 65
P +L+ + +++V ++G +ELVGTL+ FD + N VL D E Y+ I E + R
Sbjct: 6 PLDLLKLNLDERVYVKLRGARELVGTLQAFDSHCNFVLSDAVETIYQLIDGELKSREKSS 65
Query: 66 DQILLNGNNIAIL 78
+ I + G+ +A++
Sbjct: 66 EMIFVRGDTVALI 78
>gi|281344332|gb|EFB19916.1| hypothetical protein PANDA_009501 [Ailuropoda melanoleuca]
gi|351695767|gb|EHA98685.1| U6 snRNA-associated Sm-like protein LSm3, partial [Heterocephalus
glaber]
gi|440903568|gb|ELR54207.1| U6 snRNA-associated Sm-like protein LSm3, partial [Bos grunniens
mutus]
Length = 96
Score = 41.6 bits (96), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+EL G L +D ++NM+L DV E T E
Sbjct: 11 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 59
>gi|443895126|dbj|GAC72472.1| hypothetical protein PANT_7d00115 [Pseudozyma antarctica T-34]
Length = 117
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 16 RCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE---GRRITKLDQILLNG 72
+ I +KI V G +E+ G LKGFD +N+V++DV E A+ G + L ++L G
Sbjct: 35 KYIDTKIRVKFAGGREVFGVLKGFDQLMNLVMDDVHEALRDADGNVGEKTRNLGLVVLRG 94
Query: 73 NNIAILVPG 81
+ ++ P
Sbjct: 95 TALTVINPA 103
>gi|126336227|ref|XP_001366562.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform
1 [Monodelphis domestica]
gi|149636433|ref|XP_001506609.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Ornithorhynchus anatinus]
Length = 102
Score = 41.6 bits (96), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+EL G L +D ++NM+L DV E T E
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
>gi|395843168|ref|XP_003794368.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Otolemur garnettii]
Length = 99
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+EL G L +D ++NM+L DV E T E
Sbjct: 14 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 62
>gi|70606993|ref|YP_255863.1| hypothetical protein Saci_1224 [Sulfolobus acidocaldarius DSM
639]
gi|68567641|gb|AAY80570.1| hypothetical protein Saci_1224 [Sulfolobus acidocaldarius DSM
639]
Length = 79
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 45/69 (65%), Gaps = 3/69 (4%)
Query: 12 ELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLN 71
+++ +GS + V +KG+K + GTLK +D+++N+VLE+ EI +G K+ I++
Sbjct: 13 KVLAESLGSTVLVKLKGEKIVRGTLKSYDMHMNLVLEN--SEEIMNDGST-RKVGTIVIR 69
Query: 72 GNNIAILVP 80
G+N+ ++ P
Sbjct: 70 GDNVILVSP 78
>gi|15223768|ref|NP_177812.1| U6 snRNA-associated Sm-like protein LSm3 [Arabidopsis thaliana]
gi|12322228|gb|AAG51149.1|AC079283_6 Sm-like protein [Arabidopsis thaliana]
gi|21592388|gb|AAM64339.1| Sm-like protein [Arabidopsis thaliana]
gi|98961019|gb|ABF58993.1| At1g76860 [Arabidopsis thaliana]
gi|332197775|gb|AEE35896.1| U6 snRNA-associated Sm-like protein LSm3 [Arabidopsis thaliana]
Length = 98
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V ++ D+EL G L FD ++NM+L DV E T E
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVE 60
>gi|378730773|gb|EHY57232.1| small nuclear ribonucleoprotein [Exophiala dermatitidis NIH/UT8656]
Length = 138
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 16 RCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK-LDQILLNGNN 74
+ + +I V G +E+VGTLKG+D +N+VL+DV E EG T+ L ++ G
Sbjct: 56 KYVDKQITVKFNGGREIVGTLKGYDQLMNLVLDDVKETMRDDEGNETTRPLGLVVARGTL 115
Query: 75 IAILVP 80
+ ++ P
Sbjct: 116 LVLISP 121
>gi|254579134|ref|XP_002495553.1| ZYRO0B14102p [Zygosaccharomyces rouxii]
gi|238938443|emb|CAR26620.1| ZYRO0B14102p [Zygosaccharomyces rouxii]
Length = 85
Score = 41.6 bits (96), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE--YE-ITAEGRRITKLD 66
P +L+ + +++V ++G +EL GTL+ FD + N+VL D E YE + E + K
Sbjct: 6 PLDLLKLNLDERVYVKLRGARELTGTLQAFDSHCNIVLSDAVESIYELVDGELKSTEKSS 65
Query: 67 QILLNGNNIAILVPGGSPD 85
+++ + L+ S D
Sbjct: 66 EMVFVRGDSVTLITAASDD 84
>gi|449276686|gb|EMC85118.1| U6 snRNA-associated Sm-like protein LSm3, partial [Columba livia]
Length = 95
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+EL G L +D ++NM+L DV E T E
Sbjct: 10 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 58
>gi|428163538|gb|EKX32604.1| small nuclear ribonucleoprotein-like protein [Guillardia theta
CCMP2712]
Length = 91
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + +K IW+ D + G + GFD Y+N+VL++ EY R+ L
Sbjct: 11 PINLIFRFLQNKSRIQIWLYENADLRIEGQIIGFDEYMNLVLDNAEEYHKKKGTRK--PL 68
Query: 66 DQILLNGNNIAIL 78
+ILL G NI ++
Sbjct: 69 GRILLKGENITLM 81
>gi|297842449|ref|XP_002889106.1| hypothetical protein ARALYDRAFT_895567 [Arabidopsis lyrata subsp.
lyrata]
gi|297334947|gb|EFH65365.1| hypothetical protein ARALYDRAFT_895567 [Arabidopsis lyrata subsp.
lyrata]
Length = 98
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V ++ D+EL G L FD ++NM+L DV E T E
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAFDQHLNMILGDVEETITTVE 60
>gi|167518686|ref|XP_001743683.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777645|gb|EDQ91261.1| predicted protein [Monosiga brevicollis MX1]
Length = 93
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P +L+ + K+ V M+GD++L GTL +D ++NMVL +V E
Sbjct: 9 PLDLVRLSLEEKVLVKMRGDRQLEGTLHAYDQHMNMVLSNVVE 51
>gi|7657315|ref|NP_055278.1| U6 snRNA-associated Sm-like protein LSm3 [Homo sapiens]
gi|13385806|ref|NP_080585.1| U6 snRNA-associated Sm-like protein LSm3 [Mus musculus]
gi|82697405|ref|NP_001032564.1| U6 snRNA-associated Sm-like protein LSm3 [Bos taurus]
gi|157819827|ref|NP_001100081.1| U6 snRNA-associated Sm-like protein LSm3 [Rattus norvegicus]
gi|349732213|ref|NP_001231857.1| LSM3 homolog, U6 small nuclear RNA associated [Sus scrofa]
gi|386780796|ref|NP_001248293.1| U6 snRNA-associated Sm-like protein LSm3 [Macaca mulatta]
gi|73984534|ref|XP_849275.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 1
[Canis lupus familiaris]
gi|73984536|ref|XP_858392.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 2
[Canis lupus familiaris]
gi|114585529|ref|XP_001157526.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 1
[Pan troglodytes]
gi|291393472|ref|XP_002713225.1| PREDICTED: Lsm3 protein [Oryctolagus cuniculus]
gi|291396667|ref|XP_002714873.1| PREDICTED: Lsm3 protein [Oryctolagus cuniculus]
gi|296225915|ref|XP_002758699.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Callithrix jacchus]
gi|297670014|ref|XP_002813175.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Pongo
abelii]
gi|301770625|ref|XP_002920730.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like
[Ailuropoda melanoleuca]
gi|332231761|ref|XP_003265063.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 isoform 1
[Nomascus leucogenys]
gi|338714585|ref|XP_003363113.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like [Equus
caballus]
gi|344275971|ref|XP_003409784.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Loxodonta africana]
gi|348554867|ref|XP_003463246.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Cavia
porcellus]
gi|354465501|ref|XP_003495218.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Cricetulus griseus]
gi|395847186|ref|XP_003796264.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Otolemur
garnettii]
gi|397511859|ref|XP_003826280.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Pan
paniscus]
gi|402887020|ref|XP_003906905.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Papio
anubis]
gi|403268321|ref|XP_003926225.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Saimiri
boliviensis boliviensis]
gi|410951784|ref|XP_003982573.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Felis catus]
gi|426249725|ref|XP_004018600.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Ovis aries]
gi|426339551|ref|XP_004033712.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Gorilla
gorilla gorilla]
gi|55977170|sp|P62311.2|LSM3_MOUSE RecName: Full=U6 snRNA-associated Sm-like protein LSm3
gi|61227725|sp|P62310.2|LSM3_HUMAN RecName: Full=U6 snRNA-associated Sm-like protein LSm3
gi|115311781|sp|Q32PE9.3|LSM3_BOVIN RecName: Full=U6 snRNA-associated Sm-like protein LSm3
gi|5919147|gb|AAD56227.1|AF182289_1 U6 snRNA-associated Sm-like protein LSm3 [Homo sapiens]
gi|10197636|gb|AAG14954.1|AF182418_1 MDS017 [Homo sapiens]
gi|5262856|emb|CAB45866.1| Lsm3 protein [Homo sapiens]
gi|12833592|dbj|BAB22585.1| unnamed protein product [Mus musculus]
gi|12841666|dbj|BAB25303.1| unnamed protein product [Mus musculus]
gi|13937895|gb|AAH07055.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|32484176|gb|AAH54368.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|38566272|gb|AAH62875.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|48146487|emb|CAG33466.1| LSM3 [Homo sapiens]
gi|81294362|gb|AAI08143.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Bos taurus]
gi|119584594|gb|EAW64190.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Homo sapiens]
gi|148666888|gb|EDK99304.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
[Mus musculus]
gi|149036753|gb|EDL91371.1| LSM3 homolog, U6 small nuclear RNA associated (S. cerevisiae)
(predicted) [Rattus norvegicus]
gi|169144524|gb|ACA49102.1| LSM3-like protein [Ailuropoda melanoleuca]
gi|208966680|dbj|BAG73354.1| LSM3 homolog, U6 small nuclear RNA associated [synthetic
construct]
gi|296474665|tpg|DAA16780.1| TPA: U6 snRNA-associated Sm-like protein LSm3 [Bos taurus]
gi|355564515|gb|EHH21015.1| hypothetical protein EGK_03987 [Macaca mulatta]
gi|355732826|gb|AES10821.1| LSM3-like protein, U6 small nuclear RNA associated [Mustela
putorius furo]
gi|355786357|gb|EHH66540.1| hypothetical protein EGM_03552 [Macaca fascicularis]
gi|380811798|gb|AFE77774.1| U6 snRNA-associated Sm-like protein LSm3 [Macaca mulatta]
gi|410207716|gb|JAA01077.1| LSM3 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410248718|gb|JAA12326.1| LSM3 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|410291826|gb|JAA24513.1| LSM3 homolog, U6 small nuclear RNA associated [Pan troglodytes]
gi|417395685|gb|JAA44891.1| Putative small nuclear ribonucleoprotein snrnp lsm3 [Desmodus
rotundus]
gi|431916913|gb|ELK16669.1| U6 snRNA-associated Sm-like protein LSm3 [Pteropus alecto]
Length = 102
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+EL G L +D ++NM+L DV E T E
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
>gi|308492161|ref|XP_003108271.1| CRE-LSM-3 protein [Caenorhabditis remanei]
gi|308249119|gb|EFO93071.1| CRE-LSM-3 protein [Caenorhabditis remanei]
Length = 102
Score = 41.6 bits (96), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +L+ + +++V M+ D+E+ G L+ FD ++NMVL +V E T E
Sbjct: 17 PIDLLRLSLDERVYVKMRNDREIRGRLRAFDQHLNMVLSEVEETITTRE 65
>gi|346977239|gb|EGY20691.1| hypothetical protein VDAG_10320 [Verticillium dahliae VdLs.17]
Length = 140
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 16 RCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK-LDQILLNGNN 74
+ + KI V G +E+ GTLKG+D +N+VL+DV E EG+ T+ L ++ G
Sbjct: 58 KYMDKKITVKFNGGREVTGTLKGYDALMNLVLDDVEEVMRDDEGKENTRSLGLVVARGTL 117
Query: 75 IAILVPGGSPDP 86
+ ++ P +P
Sbjct: 118 LVLVSPVDGSEP 129
>gi|320100411|ref|YP_004176003.1| LSM family small nuclear ribonucleoprotein [Desulfurococcus
mucosus DSM 2162]
gi|319752763|gb|ADV64521.1| Small nuclear ribonucleoprotein, LSM family [Desulfurococcus
mucosus DSM 2162]
Length = 93
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P +++ G I V +KG E +GTL D +N+VL D TEY ++EG+ ++ +I+
Sbjct: 13 PMKVLKSAEGQIILVRIKGGYEYIGTLDLIDGTMNIVLSDCTEY--SSEGKPTSRYGRII 70
Query: 70 LNGNNIAIL 78
+ G+++ +
Sbjct: 71 IRGSHVEFI 79
>gi|302419873|ref|XP_003007767.1| RH73529p [Verticillium albo-atrum VaMs.102]
gi|261353418|gb|EEY15846.1| RH73529p [Verticillium albo-atrum VaMs.102]
Length = 141
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 16 RCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK-LDQILLNGNN 74
+ + KI V G +E+ GTLKG+D +N+VL+DV E EG+ T+ L ++ G
Sbjct: 59 KYMDKKITVKFNGGREVTGTLKGYDALMNLVLDDVEEVMRDDEGKENTRSLGLVVARGTL 118
Query: 75 IAILVPGGSPDP 86
+ ++ P +P
Sbjct: 119 LVLVSPVDGSEP 130
>gi|71041581|pdb|1TH7|A Chain A, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041582|pdb|1TH7|B Chain B, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041583|pdb|1TH7|C Chain C, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041584|pdb|1TH7|D Chain D, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041585|pdb|1TH7|E Chain E, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041586|pdb|1TH7|F Chain F, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041587|pdb|1TH7|G Chain G, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041588|pdb|1TH7|H Chain H, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041589|pdb|1TH7|I Chain I, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041590|pdb|1TH7|J Chain J, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041591|pdb|1TH7|K Chain K, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041592|pdb|1TH7|L Chain L, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041593|pdb|1TH7|M Chain M, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
gi|71041594|pdb|1TH7|N Chain N, Crystal Structure Of An Archaeal Sm Protein From
Sulfolobus Solfataricus
Length = 81
Score = 41.6 bits (96), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 22 IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVP 80
+ V +KG+KE+ G L+ +D ++N+VL D E + G+ KL I++ G+N+ ++ P
Sbjct: 22 VLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGK---KLGTIVIRGDNVILISP 77
>gi|288683438|ref|NP_001165758.1| LSM3 homolog, U6 small nuclear RNA associated [Xenopus (Silurana)
tropicalis]
gi|161612120|gb|AAI56008.1| Unknown (protein for MGC:185368) [Xenopus (Silurana) tropicalis]
Length = 102
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+EL G L +D ++NM+L DV E T E
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
>gi|435848032|ref|YP_007310282.1| small nuclear ribonucleoprotein [Natronococcus occultus SP4]
gi|433674300|gb|AGB38492.1| small nuclear ribonucleoprotein [Natronococcus occultus SP4]
Length = 75
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQI- 68
P ++++ +G ++ V +K E VG L G+D ++N+VLEDV+ A R + D +
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLTGYDQHMNLVLEDVSR----AADREVDDEDPVE 60
Query: 69 ---LLNGNNIAILVP 80
++ G+N+ + P
Sbjct: 61 DTTIIRGDNVVSITP 75
>gi|432328294|ref|YP_007246438.1| small nuclear ribonucleoprotein [Aciduliprofundum sp. MAR08-339]
gi|432135003|gb|AGB04272.1| small nuclear ribonucleoprotein [Aciduliprofundum sp. MAR08-339]
Length = 72
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 9 LPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQI 68
+P ++++ + +I +++K ++ L G L GFD Y+NMVL D E T E R +L +
Sbjct: 3 MPLKMLENFMNKRISLLLKDNRVLEGKLVGFDDYMNMVLMDTEEK--TEEMTR--RLGTV 58
Query: 69 LLNGNNIA 76
+L GNN+
Sbjct: 59 ILRGNNVV 66
>gi|15897658|ref|NP_342263.1| small nuclear riboprotein (snRNP-2) [Sulfolobus solfataricus P2]
gi|13813927|gb|AAK41053.1| Small nuclear riboprotein protein (snRNP-2) [Sulfolobus
solfataricus P2]
Length = 79
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 37/59 (62%), Gaps = 3/59 (5%)
Query: 22 IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVP 80
+ V +KG+KE+ G L+ +D ++N+VL D E + G+ KL I++ G+N+ ++ P
Sbjct: 20 VLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGK---KLGTIVIRGDNVILISP 75
>gi|344241612|gb|EGV97715.1| U6 snRNA-associated Sm-like protein LSm3 [Cricetulus griseus]
Length = 103
Score = 41.6 bits (96), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+EL G L +D ++NM+L DV E T E
Sbjct: 11 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 59
>gi|350536047|ref|NP_001232226.1| putative sm like protein U6 snRNA-associated Sm-like protein
[Taeniopygia guttata]
gi|50754429|ref|XP_414380.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3 [Gallus
gallus]
gi|327265982|ref|XP_003217786.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like [Anolis
carolinensis]
gi|197127206|gb|ACH43704.1| putative sm like protein U6 snRNA-associated Sm-like protein
[Taeniopygia guttata]
Length = 102
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+EL G L +D ++NM+L DV E T E
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
>gi|140832760|gb|AAI35705.1| LOC100125161 protein [Xenopus (Silurana) tropicalis]
Length = 100
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+EL G L +D ++NM+L DV E T E
Sbjct: 15 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 63
>gi|452842262|gb|EME44198.1| hypothetical protein DOTSEDRAFT_71875 [Dothistroma septosporum
NZE10]
Length = 85
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + ++ V + G ++++GTL+G+DV++N+VL++ TE + E R L ++ GN
Sbjct: 8 LKKYLDKRVEVQLNGSRKVMGTLRGYDVFLNIVLDEATESKPNGEKAR---LGMCVIRGN 64
Query: 74 NIAIL 78
++ ++
Sbjct: 65 SVVMM 69
>gi|395531172|ref|XP_003767656.1| PREDICTED: uncharacterized protein LOC100930096 [Sarcophilus
harrisii]
Length = 226
Score = 41.6 bits (96), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
++W+ + + + G + GFD Y+N+VL+D E + R+ +L +I+L G+NI +L
Sbjct: 166 QVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITLL 221
>gi|403417353|emb|CCM04053.1| predicted protein [Fibroporia radiculosa]
Length = 97
Score = 41.6 bits (96), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 12/83 (14%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE-------YEITAEGRRI 62
P +LI + +++V ++GD+EL G L +D ++N++L DV E E EG+
Sbjct: 11 PFDLIRLSLSERVFVKLRGDRELTGVLHAYDGHMNLILSDVEETIMIVDQVEGAPEGKGT 70
Query: 63 T-----KLDQILLNGNNIAILVP 80
K++ + + G+ + ++ P
Sbjct: 71 VNVAKRKMEMLFVRGDGVILVSP 93
>gi|224011054|ref|XP_002294484.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220969979|gb|EED88318.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 90
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P +LI I +++V + D+EL G L FD ++NMVL DV E
Sbjct: 5 PLDLIKLSIDERVYVKCRNDRELRGKLHAFDQHLNMVLSDVEE 47
>gi|296473647|tpg|DAA15762.1| TPA: small nuclear ribonucleoprotein polypeptide E-like [Bos
taurus]
Length = 92
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 43/76 (56%), Gaps = 6/76 (7%)
Query: 7 QLLPSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRI 62
Q+ P LI RC+ ++ +W+ + + G GFD Y+N+VL+D + + R+
Sbjct: 14 QVQPINLIFRCLQNRSRIQVWLYEQVNMWTEGCTIGFDEYMNLVLDDAEDIHSKTKSRK- 72
Query: 63 TKLDQILLNGNNIAIL 78
+L +I+L G+NI +L
Sbjct: 73 -QLGRIMLKGDNITLL 87
>gi|147903851|ref|NP_001091408.1| LSM3 homolog, U6 small nuclear RNA associated [Xenopus laevis]
gi|126631439|gb|AAI33265.1| LOC100049097 protein [Xenopus laevis]
Length = 102
Score = 41.6 bits (96), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+EL G L +D ++NM+L DV E T E
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLNAYDQHLNMILGDVEETVTTIE 65
>gi|453085821|gb|EMF13864.1| LSM-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 84
Score = 41.6 bits (96), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + ++ V + G ++++GTL+G+DV++N+VL++ TE + E +L ++ GN
Sbjct: 8 LKKYLDKRVEVQLNGSRKVMGTLRGYDVFLNIVLDEATESKPNGEK---VRLGMCVIRGN 64
Query: 74 NIAIL 78
++ +L
Sbjct: 65 SVVML 69
>gi|396489534|ref|XP_003843128.1| hypothetical protein LEMA_P088880.1 [Leptosphaeria maculans JN3]
gi|312219706|emb|CBX99649.1| hypothetical protein LEMA_P088880.1 [Leptosphaeria maculans JN3]
Length = 202
Score = 41.6 bits (96), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR-RITKLDQILLNG 72
+++ + +I V G +E++GTLKG+D +N+VL++V E EG R KL I+ G
Sbjct: 118 LNKYMDKQITVKFSGGREVIGTLKGYDQLMNLVLDEVKEALTDDEGNIRYRKLGLIVARG 177
Query: 73 NNIAILVP 80
+ ++ P
Sbjct: 178 TLLVVISP 185
>gi|396485483|ref|XP_003842182.1| similar to U6 snRNA-associated Sm-like protein LSm3
[Leptosphaeria maculans JN3]
gi|312218758|emb|CBX98703.1| similar to U6 snRNA-associated Sm-like protein LSm3
[Leptosphaeria maculans JN3]
Length = 96
Score = 41.6 bits (96), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEG---------R 60
P +L+ CI + V ++GD+EL G L +D + N+VL DV E A+ R
Sbjct: 10 PLDLVRLCIDEIVIVKLRGDRELKGRLHAYDSHCNLVLGDVEETIFVADEEEEDLEPRVR 69
Query: 61 RITKLDQILL-NGNNIAILVPG 81
+ K ++L G+++ ++ P
Sbjct: 70 TVKKQSEMLFVRGDSVVLIAPA 91
>gi|340379367|ref|XP_003388198.1| PREDICTED: small nuclear ribonucleoprotein E-like [Amphimedon
queenslandica]
Length = 93
Score = 41.6 bits (96), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 43/81 (53%), Gaps = 6/81 (7%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + +K +W+ + + + G + GFD ++N+V+ D E + E R+ ++
Sbjct: 15 PINLIFRYLQNKSRVQVWLYGRQNMRIEGVITGFDEFMNLVMSDAEEVYLKTETRK--RI 72
Query: 66 DQILLNGNNIAILVPGGSPDP 86
+ILL G+N+ +++
Sbjct: 73 GRILLRGDNVTLIMQAQQSSS 93
>gi|324523853|gb|ADY48312.1| U6 snRNA-associated Sm-like protein LSm7 [Ascaris suum]
Length = 101
Score = 41.6 bits (96), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 11/75 (14%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY--------EITAEGRRITKL 65
+ R I KI V +G +E G LKG+D +N+VL++ EY +IT E R L
Sbjct: 18 LSRFIDKKIRVKFQGGREASGILKGYDALINLVLDNAVEYVRDSEDPQKITEETR---AL 74
Query: 66 DQILLNGNNIAILVP 80
I+ G I ++ P
Sbjct: 75 GLIVARGTAITVVAP 89
>gi|281353334|gb|EFB28918.1| hypothetical protein PANDA_013986 [Ailuropoda melanoleuca]
Length = 86
Score = 41.6 bits (96), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
++W+ + + + G + FD YVN+VL+D E + R+ +L QI+L G+N +L
Sbjct: 29 QVWLHNQANMRIEGCIHSFDEYVNLVLDDAKEIHYKTKSRK--QLGQIMLKGDNTTLL 84
>gi|119719338|ref|YP_919833.1| like-Sm ribonucleoprotein, core [Thermofilum pendens Hrk 5]
gi|119524458|gb|ABL77830.1| Like-Sm ribonucleoprotein, core [Thermofilum pendens Hrk 5]
Length = 73
Score = 41.6 bits (96), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 22 IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPG 81
+ V +KG +E+ G LK +D ++N+VLE+ E G R +L I++ G+N+ ++ P
Sbjct: 17 VLVKLKGGREIRGQLKSYDYHLNLVLENAEEI----RGTRTRQLGTIIVRGDNVILVSPA 72
>gi|402083491|gb|EJT78509.1| sm snRNP core protein Smg1 [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 86
Score = 41.2 bits (95), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + K++V + G +++VG ++G+DV++N+VL++ E +G KL +++ GN
Sbjct: 8 LKKYLDKKVFVQLNGSRKVVGVVRGYDVFLNIVLDEAFE---DKDGGEKVKLGMVVIRGN 64
Query: 74 NIAIL 78
++ +L
Sbjct: 65 SVVML 69
>gi|406865394|gb|EKD18436.1| LSM domain-containing protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 83
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 47/79 (59%), Gaps = 8/79 (10%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + +++V + G ++++G L+G+DV++N+VL+D E +G +L +++ GN
Sbjct: 8 LKKYLDKRLFVQLNGTRKVIGILRGYDVFLNIVLDDAVE---EKDGGEKVRLGMVVIRGN 64
Query: 74 NIAIL-----VPGGSPDPE 87
++ +L + GG + E
Sbjct: 65 SVVMLEALERIGGGRENRE 83
>gi|392339645|ref|XP_003753865.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Rattus norvegicus]
Length = 169
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 10 PSELIDRCIGS----KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + S ++W+ + D ++ G + GFD Y+N+V +D E + R +
Sbjct: 17 PINLIFRYLQSGSRIQVWLCEQVDAQIEGCIIGFDEYMNLVSDDAEEIHSKTKSR--EQP 74
Query: 66 DQILLNGNNIAILVPGG 82
I+L G+NI +L P G
Sbjct: 75 GWIMLKGDNITLLQPAG 91
>gi|392563452|gb|EIW56631.1| U6 snRNA-associated Sm-like protein LSm7 [Trametes versicolor
FP-101664 SS1]
Length = 94
Score = 41.2 bits (95), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 16 RCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK-LDQILLNGNN 74
+ + +I V G +E+ G LKG+D +N+VL++V E T +G T+ L ++L G
Sbjct: 14 KYVNERIRVKFTGGREVTGILKGYDQLLNLVLDEVQENLQTPDGESTTRNLGLVVLRGPT 73
Query: 75 IAILVP 80
I +L P
Sbjct: 74 ITLLSP 79
>gi|320168707|gb|EFW45606.1| hypothetical protein CAOG_03590 [Capsaspora owczarzaki ATCC
30864]
Length = 87
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 6/76 (7%)
Query: 8 LLPSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
+LP LI + + +K IW+ + + G + GFD Y+N+VL+D E ++ R+
Sbjct: 10 VLPINLIFKYLQTKTRVQIWLYEQASMRVEGVIVGFDEYMNLVLDDAEELNAKSQTRK-- 67
Query: 64 KLDQILLNGNNIAILV 79
+ +ILL G+NI +++
Sbjct: 68 NVGRILLKGDNITLIM 83
>gi|440640051|gb|ELR09970.1| small nuclear ribonucleoprotein G [Geomyces destructans 20631-21]
Length = 83
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + +++V + G ++++G L+G+DV++N+VL+D E + E RI +++ GN
Sbjct: 8 LKKYLDKRLFVQLNGSRKVIGVLRGYDVFLNIVLDDAVEEKDGGEKVRIG---MVVIRGN 64
Query: 74 NIAIL 78
++ +L
Sbjct: 65 SVVML 69
>gi|52346208|ref|NP_001005147.1| small nuclear ribonucleoprotein polypeptide E [Xenopus (Silurana)
tropicalis]
gi|50603823|gb|AAH77697.1| MGC89991 protein [Xenopus (Silurana) tropicalis]
gi|89268183|emb|CAJ83657.1| small nuclear ribonucleoprotein polypeptide E [Xenopus (Silurana)
tropicalis]
gi|166796482|gb|AAI59376.1| MGC89991 protein [Xenopus (Silurana) tropicalis]
Length = 92
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + + G + GFD Y+N+VL+D E + + R+ +L
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHLKTKSRK--QL 74
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI +L
Sbjct: 75 GRIMLKGDNITLL 87
>gi|242008943|ref|XP_002425253.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212509009|gb|EEB12515.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 96
Score = 41.2 bits (95), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + G + GFD Y+N+VL+D E+ I + R+ +L
Sbjct: 16 PINLIFRYLQNRSRVQVWIYENITTRIEGHIVGFDEYMNLVLDDAEEFNIKTKNRK--EL 73
Query: 66 DQILLNGNNIAIL 78
+I++ G+NI ++
Sbjct: 74 GRIMMKGDNITLI 86
>gi|401399263|ref|XP_003880515.1| deha2e04510p, related [Neospora caninum Liverpool]
gi|325114925|emb|CBZ50482.1| deha2e04510p, related [Neospora caninum Liverpool]
Length = 96
Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 47/89 (52%), Gaps = 12/89 (13%)
Query: 4 NPSQLL--PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRR 61
+P+ LL P +++ + ++ + +GD+E++G L +D+++NMVL DV E T
Sbjct: 2 DPTVLLQEPLDIVRVSLDDRVTIKCRGDREVMGKLHAYDMHLNMVLGDVEEVATTVTTDP 61
Query: 62 IT----------KLDQILLNGNNIAILVP 80
+T +L I L G+ I ++ P
Sbjct: 62 LTGDEQTKKTTRRLPLIFLRGDAIILVAP 90
>gi|170029969|ref|XP_001842863.1| snrnp sm protein [Culex quinquefasciatus]
gi|167865323|gb|EDS28706.1| snrnp sm protein [Culex quinquefasciatus]
Length = 101
Score = 41.2 bits (95), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + KI+V M+ ++EL G L FD ++NMVL D E T E
Sbjct: 15 PLDLIRLSLDEKIYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVE 63
>gi|367012788|ref|XP_003680894.1| hypothetical protein TDEL_0D00990 [Torulaspora delbrueckii]
gi|359748554|emb|CCE91683.1| hypothetical protein TDEL_0D00990 [Torulaspora delbrueckii]
Length = 85
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 48/82 (58%), Gaps = 6/82 (7%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE--YEITAEGRRITKLDQ 67
P +L+ + +++V ++G +EL+GTL+ FD + N+VL D E Y++ + + T+ +
Sbjct: 6 PLDLLKLNLDERVYVKLRGARELIGTLQAFDSHCNIVLSDAVETIYQLESGELKSTEKNS 65
Query: 68 --ILLNGNNIAILVPGGSPDPE 87
I + G+++ ++ PD E
Sbjct: 66 EMIFVRGDSVTLITT--PPDDE 85
>gi|328350067|emb|CCA36467.1| U6 snRNA-associated Sm-like protein LSm6 [Komagataella pastoris CBS
7435]
Length = 199
Score = 41.2 bits (95), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P +I C+ K++V ++G +E+VG L +D + N+VL D E
Sbjct: 121 PLNMIKLCLDEKVYVKLRGAREIVGKLHAYDNHCNLVLGDAVE 163
>gi|341581440|ref|YP_004761932.1| small nuclear ribonucleoprotein [Thermococcus sp. 4557]
gi|340809098|gb|AEK72255.1| small nuclear ribonucleoprotein [Thermococcus sp. 4557]
Length = 76
Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++I + + + V++K E G L G+D+++N+VL D + EG + + +I+
Sbjct: 5 PLDVIHKSLDKDVLVLLKRGSEFRGRLIGYDIHLNVVLADAA---LIQEGEEVKRYGKIV 61
Query: 70 LNGNNIAILVP 80
+ G+N+ + P
Sbjct: 62 IRGDNVLAISP 72
>gi|157123813|ref|XP_001653925.1| snrnp sm protein [Aedes aegypti]
gi|108874209|gb|EAT38434.1| AAEL009671-PA [Aedes aegypti]
Length = 101
Score = 41.2 bits (95), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + KI+V M+ ++EL G L FD ++NMVL D E T E
Sbjct: 15 PLDLIRLSLDEKIYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVE 63
>gi|393907574|gb|EFO26665.2| hypothetical protein LOAG_01816 [Loa loa]
Length = 101
Score = 41.2 bits (95), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 11/75 (14%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY--------EITAEGRRITKL 65
+ R I K+ V +G +E G LKG+D +N+VL++ EY ++T E R +L
Sbjct: 18 LSRFIDKKVRVKFQGGREASGILKGYDALINLVLDNAVEYVRDTEDPQKVTEETR---QL 74
Query: 66 DQILLNGNNIAILVP 80
I+ G I ++ P
Sbjct: 75 GLIVARGTAITVVAP 89
>gi|50549605|ref|XP_502273.1| YALI0D01155p [Yarrowia lipolytica]
gi|49648141|emb|CAG80459.1| YALI0D01155p [Yarrowia lipolytica CLIB122]
Length = 85
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%), Gaps = 4/58 (6%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
++W+ + D + GTL GFD ++N+VLED +I + R K+ +I+L G+NI ++
Sbjct: 28 QVWLFEQSDTRIQGTLVGFDEFMNVVLEDAI--QICGDKER--KIGKIMLKGDNITLI 81
>gi|326928055|ref|XP_003210200.1| PREDICTED: LOW QUALITY PROTEIN: u6 snRNA-associated Sm-like
protein LSm3-like [Meleagris gallopavo]
Length = 108
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+EL G L +D ++NM+L DV E T E
Sbjct: 23 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 71
>gi|145349245|ref|XP_001419048.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579279|gb|ABO97341.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 97
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 18 IGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE-GRRITKLDQILLNGNNIA 76
+ +++ VI + +VGTL+GFD N++LED E ++E G L ++ G+N+A
Sbjct: 10 LDARVSVITNDGRHIVGTLRGFDQVTNVILEDCAERVYSSESGVEEAPLGVYMIRGDNVA 69
Query: 77 ILVP 80
++ P
Sbjct: 70 LVGP 73
>gi|85090916|ref|XP_958647.1| hypothetical protein NCU09880 [Neurospora crassa OR74A]
gi|336273960|ref|XP_003351734.1| hypothetical protein SMAC_00278 [Sordaria macrospora k-hell]
gi|28920025|gb|EAA29411.1| hypothetical protein NCU09880 [Neurospora crassa OR74A]
gi|336463997|gb|EGO52237.1| hypothetical protein NEUTE1DRAFT_90311 [Neurospora tetrasperma
FGSC 2508]
gi|350296078|gb|EGZ77055.1| LSM-domain-containing protein [Neurospora tetrasperma FGSC 2509]
gi|380096013|emb|CCC06060.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 85
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + +++V + G ++++G L+G+DV++N+VL+D E +G KL + + GN
Sbjct: 8 LKKYLDKRLFVQLNGSRKVIGVLRGYDVFLNIVLDDAVE---EKDGGEKVKLGMVTIRGN 64
Query: 74 NIAIL 78
++ ++
Sbjct: 65 SVVMM 69
>gi|302348719|ref|YP_003816357.1| hypothetical protein ASAC_0920 [Acidilobus saccharovorans 345-15]
gi|302329131|gb|ADL19326.1| hypothetical protein ASAC_0920 [Acidilobus saccharovorans 345-15]
Length = 78
Score = 41.2 bits (95), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 46/80 (57%), Gaps = 4/80 (5%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
MA+ + ++++ + + ++V +KG + + G LK FD ++N+VLE+ E+T G
Sbjct: 1 MANQAERTNTFKVMNEYLNASVYVKLKGGEGVKGVLKSFDQHLNLVLENAE--ELTERGS 58
Query: 61 RITKLDQILLNGNNIAILVP 80
R L +L+ G++I + P
Sbjct: 59 R--SLGTVLVRGDSIVAISP 76
>gi|448399368|ref|ZP_21570665.1| Like-Sm ribonucleoprotein core [Haloterrigena limicola JCM 13563]
gi|445668989|gb|ELZ21605.1| Like-Sm ribonucleoprotein core [Haloterrigena limicola JCM 13563]
Length = 75
Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 6/74 (8%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL---D 66
P ++++ +G ++ V +K E VG L G+D ++N+VLEDVT I EG D
Sbjct: 5 PLDVLEASLGDRVTVRLKSGDEHVGELAGYDQHMNLVLEDVT---IPVEGSVEEDAPVED 61
Query: 67 QILLNGNNIAILVP 80
++ G+N+ + P
Sbjct: 62 TTIIRGDNVVSITP 75
>gi|407927498|gb|EKG20390.1| hypothetical protein MPH_02316 [Macrophomina phaseolina MS6]
Length = 99
Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE--YEITAEG------RR 61
P +L+ C+ ++V ++GD+EL G L +D + N+VL DV E Y + + R
Sbjct: 16 PLDLVRLCLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDANEEEVVRT 75
Query: 62 ITKLDQILL-NGNNIAILVP 80
+ K ++L G+++ ++ P
Sbjct: 76 VKKQSEMLFVRGDSVVLISP 95
>gi|389852826|ref|YP_006355060.1| nuclear ribonucleoprotein [Pyrococcus sp. ST04]
gi|388250132|gb|AFK22985.1| nuclear ribonucleoprotein [Pyrococcus sp. ST04]
Length = 76
Score = 41.2 bits (95), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++I + + + VI+K E G L G+D+++N+VL D E+ +G + K +I+
Sbjct: 5 PLDVIHKSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADA---EMIQDGEVVKKYGKIV 61
Query: 70 LNGNNIAILVP 80
+ G+N+ + P
Sbjct: 62 IRGDNVLAISP 72
>gi|390960267|ref|YP_006424101.1| small nuclear ribonucleoprotein [Thermococcus sp. CL1]
gi|390518575|gb|AFL94307.1| small nuclear ribonucleoprotein [Thermococcus sp. CL1]
Length = 76
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++I R + + V++K E G L G+D+++N+VL D + +G + + +I+
Sbjct: 5 PLDVIHRSLDKDVLVLLKRGSEFRGRLIGYDIHLNVVLADAA---LIQDGEEVKRYGKIV 61
Query: 70 LNGNNIAILVP 80
+ G+N+ + P
Sbjct: 62 IRGDNVLAISP 72
>gi|332021459|gb|EGI61827.1| U6 snRNA-associated Sm-like protein LSm3 [Acromyrmex echinatior]
Length = 125
Score = 41.2 bits (95), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P +LI + +I+V M+ ++EL G L FD ++NMVL DV E
Sbjct: 43 PLDLIKLSLEERIYVKMRNERELRGKLHAFDQHLNMVLGDVEE 85
>gi|425766973|gb|EKV05561.1| Small nuclear ribonucleoprotein (LSM5), putative [Penicillium
digitatum Pd1]
gi|425780124|gb|EKV18142.1| Small nuclear ribonucleoprotein (LSM5), putative [Penicillium
digitatum PHI26]
Length = 34
Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/30 (70%), Positives = 25/30 (83%), Gaps = 4/30 (13%)
Query: 12 ELIDRCIGSKIWVIMKGDKELVGTLKGFDV 41
ELID+C+GS+IWV+MKGDK G LK FDV
Sbjct: 9 ELIDKCVGSRIWVVMKGDK---GKLK-FDV 34
>gi|398407923|ref|XP_003855427.1| hypothetical protein MYCGRDRAFT_84746 [Zymoseptoria tritici
IPO323]
gi|339475311|gb|EGP90403.1| hypothetical protein MYCGRDRAFT_84746 [Zymoseptoria tritici
IPO323]
Length = 94
Score = 41.2 bits (95), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE--YEITAEG----RRIT 63
P +L+ + ++V ++GD+EL G L +D + N+VL DVTE Y + E R +
Sbjct: 15 PLDLVRLSLNEVVFVKLRGDRELQGRLHAYDSHCNLVLGDVTETVYVVDEEDEDNVRTVK 74
Query: 64 KLDQILL-NGNNIAILVP 80
K ++L G+++ ++ P
Sbjct: 75 KQSEMLFVRGDSVVLISP 92
>gi|328853199|gb|EGG02339.1| hypothetical protein MELLADRAFT_75479 [Melampsora larici-populina
98AG31]
Length = 78
Score = 41.2 bits (95), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 43/63 (68%), Gaps = 2/63 (3%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + ++++ ++G+++L G L+GFD+++N+VL++ E + EG K+ +++ GN
Sbjct: 9 LKKYMDKRLFLNLQGNRKLSGVLRGFDIFLNLVLDEAQEENL--EGGEKRKMGLVVIRGN 66
Query: 74 NIA 76
+++
Sbjct: 67 SVS 69
>gi|392568264|gb|EIW61438.1| like-Sm ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 97
Score = 41.2 bits (95), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P +LI + +++V ++GD+EL G L +D ++N++L DV E
Sbjct: 11 PFDLIRLSLSERVFVKLRGDRELTGILHAYDGHMNLILSDVEE 53
>gi|389746884|gb|EIM88063.1| like-Sm ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 97
Score = 41.2 bits (95), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P +LI + +++V ++GD+EL G L +D ++N++L DV E
Sbjct: 11 PFDLIRLSLSERVFVKLRGDRELTGILHAYDGHMNLILSDVEE 53
>gi|255727663|ref|XP_002548757.1| hypothetical protein CTRG_03054 [Candida tropicalis MYA-3404]
gi|240133073|gb|EER32629.1| hypothetical protein CTRG_03054 [Candida tropicalis MYA-3404]
Length = 92
Score = 41.2 bits (95), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRR------IT 63
P +LI + + V ++G +EL G L+G+D + NMVL D E+ + + +
Sbjct: 14 PLDLIRFQLDEYVLVKLRGARELKGKLQGYDSHCNMVLSDAQEFIYSLDENSKIKDPIVK 73
Query: 64 KLDQILLNGNNIAILVP 80
K D + + G+++ ++ P
Sbjct: 74 KTDMVFVRGDSVILISP 90
>gi|397773764|ref|YP_006541310.1| Like-Sm ribonucleoprotein core [Natrinema sp. J7-2]
gi|397682857|gb|AFO57234.1| Like-Sm ribonucleoprotein core [Natrinema sp. J7-2]
Length = 135
Score = 41.2 bits (95), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 14/78 (17%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDV-------TEYEITAEGRRI 62
P ++++ +G ++ V +K E VG L G+D ++N+VLEDV E E AE
Sbjct: 65 PLDVLEASLGDRVTVRLKSGDEYVGDLAGYDQHMNLVLEDVMIPVEGNVEEEPPAE---- 120
Query: 63 TKLDQILLNGNNIAILVP 80
D ++ G+N+ + P
Sbjct: 121 ---DTTIIRGDNVVSITP 135
>gi|392593019|gb|EIW82345.1| like-Sm ribonucleo protein [Coniophora puteana RWD-64-598 SS2]
Length = 97
Score = 41.2 bits (95), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 30/43 (69%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P +LI + +++V ++GD+E+VG L +D ++N++L DV E
Sbjct: 11 PFDLIRLSLSERVFVKLRGDREVVGILHAYDGHMNLILSDVEE 53
>gi|407464058|ref|YP_006774940.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
gi|407047246|gb|AFS81998.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
Length = 78
Score = 41.2 bits (95), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 12 ELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLN 71
+++D I + + +KG+K + G L GFD ++N++L+ + EI AEG L I++
Sbjct: 8 KVLDESINQVVLIKLKGNKTIRGNLLGFDQHMNLLLD--SSEEIPAEGDS-KSLGSIVVR 64
Query: 72 GNNIAILVP 80
G+N+ ++ P
Sbjct: 65 GDNVVMISP 73
>gi|390477421|ref|XP_002760651.2| PREDICTED: small nuclear ribonucleoprotein E-like [Callithrix
jacchus]
Length = 79
Score = 41.2 bits (95), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + + G + GFD Y+N+VL+D E + R+ +L
Sbjct: 4 PKNLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 61
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI +L
Sbjct: 62 GRIMLKGDNITLL 74
>gi|330796969|ref|XP_003286536.1| hypothetical protein DICPUDRAFT_30992 [Dictyostelium purpureum]
gi|325083517|gb|EGC36968.1| hypothetical protein DICPUDRAFT_30992 [Dictyostelium purpureum]
Length = 97
Score = 41.2 bits (95), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P +LI + +I+V M+ D+EL G L +D ++NM+L DV E
Sbjct: 12 PLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEE 54
>gi|402226567|gb|EJU06627.1| Sm-like ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 92
Score = 41.2 bits (95), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE----GRRIT-- 63
P +L+ + +++V +KG++ L G L +D ++NM++ DV E + E G +
Sbjct: 11 PFDLVRLSLSERVFVKLKGERSLTGVLHAYDGHMNMIMSDVEETILMVEPEESGSTVQTM 70
Query: 64 --KLDQILLNGNNIAILVPGG 82
++ + + G+++ ++ PG
Sbjct: 71 KRAMEMLFVRGDSVILVSPGA 91
>gi|336364678|gb|EGN93033.1| hypothetical protein SERLA73DRAFT_146187 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386725|gb|EGO27871.1| hypothetical protein SERLADRAFT_383548 [Serpula lacrymans var.
lacrymans S7.9]
Length = 96
Score = 41.2 bits (95), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 11/82 (13%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE------YEITAEGRRIT 63
P +LI + +++V ++GD+E+ G L +D ++N++L DV E + E RR
Sbjct: 11 PFDLIRLSLSERVYVKLRGDREVTGILHAYDGHMNLILSDVEETIMIVDVDAPLEERRAV 70
Query: 64 -----KLDQILLNGNNIAILVP 80
K++ + + G+ + ++ P
Sbjct: 71 KMAKRKMEMLFVRGDGVILVSP 92
>gi|169614602|ref|XP_001800717.1| hypothetical protein SNOG_10447 [Phaeosphaeria nodorum SN15]
gi|160702780|gb|EAT81841.2| hypothetical protein SNOG_10447 [Phaeosphaeria nodorum SN15]
Length = 96
Score = 41.2 bits (95), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 10/82 (12%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEG---------R 60
P +L+ CI + V ++GD+EL G L +D + N+VL DV E AE R
Sbjct: 10 PLDLVRLCIDEVVIVKLRGDRELKGRLHAYDSHCNLVLGDVEETIFVAEEEEEDQEPRVR 69
Query: 61 RITKLDQILL-NGNNIAILVPG 81
+ K ++L G+++ ++ P
Sbjct: 70 TVKKQSEMLFVRGDSVVLIAPA 91
>gi|402084831|gb|EJT79849.1| hypothetical protein GGTG_04932 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 143
Score = 41.2 bits (95), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 16 RCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK-LDQILLNGNN 74
R + ++ V G +E+ GTLKG+D +N+VL+DV E +G ++ L +++ G
Sbjct: 60 RYMDKEVQVKFNGGREVTGTLKGYDALMNLVLDDVKETMRDDDGNETSRPLGLVVIRGTL 119
Query: 75 IAILVPGGSPDP 86
+ L P +P
Sbjct: 120 LVALSPTDGSEP 131
>gi|321263450|ref|XP_003196443.1| U6 snRNA binding protein [Cryptococcus gattii WM276]
gi|317462919|gb|ADV24656.1| U6 snRNA binding protein, putative [Cryptococcus gattii WM276]
Length = 111
Score = 41.2 bits (95), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 11 SELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVT-EYEITAEGRRITKLDQIL 69
++ +D+ I K G +E G LKG+D +N+V++DV EYE +GR L ++
Sbjct: 30 AQFVDKSIRVKFM----GGREATGILKGYDQLMNLVMDDVVEEYE---DGRPTRSLGLVV 82
Query: 70 LNGNNIAILVP 80
L G NI ++ P
Sbjct: 83 LRGPNIVLVSP 93
>gi|111226776|ref|XP_001134590.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
gi|121962505|sp|Q1ZXK3.1|LSM3_DICDI RecName: Full=Probable U6 snRNA-associated Sm-like protein LSm3
gi|90970763|gb|EAS66906.1| LSM domain-containing protein [Dictyostelium discoideum AX4]
Length = 97
Score = 41.2 bits (95), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P +LI + +I+V M+ D+EL G L +D ++NM+L DV E
Sbjct: 12 PLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEE 54
>gi|324541578|gb|ADY49622.1| U6 snRNA-associated Sm-like protein LSm7 [Ascaris suum]
Length = 101
Score = 41.2 bits (95), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 11/75 (14%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY--------EITAEGRRITKL 65
+ R I KI V +G +E G LKG+D +N+VL++ EY +IT E R L
Sbjct: 18 LSRFIDKKIRVKFQGGREASGILKGYDALINLVLDNAVEYVRDSEDPQKITEETR---PL 74
Query: 66 DQILLNGNNIAILVP 80
I+ G I ++ P
Sbjct: 75 GLIVARGTAITVVAP 89
>gi|72008835|ref|XP_786272.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Strongylocentrotus purpuratus]
Length = 105
Score = 40.8 bits (94), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P +LI + +I+V M+ D+EL G L +D ++NM+L DV E
Sbjct: 18 PLDLIRLSLDERIYVKMRNDRELKGRLHAYDQHLNMILGDVEE 60
>gi|196009502|ref|XP_002114616.1| expressed hypothetical protein [Trichoplax adhaerens]
gi|190582678|gb|EDV22750.1| expressed hypothetical protein [Trichoplax adhaerens]
Length = 76
Score = 40.8 bits (94), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
S+ P EL + + ++ + + G++ +VGTL+GFD ++N+VL+D E + E L
Sbjct: 2 SKAHPPEL-KKFMEKRLSIKINGNRTVVGTLRGFDPFMNIVLDDTVEQVSSKEN---NHL 57
Query: 66 DQILLNGNNIAIL 78
+++ GN++ ++
Sbjct: 58 GMVVIRGNSVVMM 70
>gi|346971880|gb|EGY15332.1| hypothetical protein VDAG_06186 [Verticillium dahliae VdLs.17]
Length = 85
Score = 40.8 bits (94), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + +++V + G ++++G L+G+DV++N+VL++ E EG ++ +++ GN
Sbjct: 8 LKKYLDKRLFVQLNGSRKVIGVLRGYDVFLNIVLDEAVE---EKEGGEKVRIGMVVIRGN 64
Query: 74 NIAIL 78
++ +L
Sbjct: 65 SVVML 69
>gi|336463585|gb|EGO51825.1| hypothetical protein NEUTE1DRAFT_53111 [Neurospora tetrasperma FGSC
2508]
Length = 144
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK-LDQILLNG 72
+ + + +I V G +E+ GTLKG+D +N+VL+DV E EG T+ L ++ G
Sbjct: 59 LKKYMDQRITVKFNGGREVTGTLKGYDALMNLVLDDVQEAVRDEEGNETTRPLGLVVARG 118
Query: 73 NNIAILVP 80
+ ++ P
Sbjct: 119 TLLVVISP 126
>gi|328872794|gb|EGG21161.1| LSM domain-containing protein [Dictyostelium fasciculatum]
Length = 97
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P +LI + +I+V M+ D+EL G L +D ++NM+L DV E
Sbjct: 12 PLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEE 54
>gi|320170085|gb|EFW46984.1| small nuclear ribonucleoprotein sm d2 [Capsaspora owczarzaki ATCC
30864]
Length = 118
Score = 40.8 bits (94), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 44/75 (58%), Gaps = 11/75 (14%)
Query: 20 SKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY--EITAEGRRITK---------LDQI 68
+++++ + +++L+ +K FD + NM+LEDV E+ E T G+ TK + ++
Sbjct: 39 AQVFINCRNNRKLLARVKAFDRHFNMILEDVREFWTEGTRAGKGKTKSKPVNKDRFISKL 98
Query: 69 LLNGNNIAILVPGGS 83
L G+++ I++P S
Sbjct: 99 FLRGDSVIIILPNPS 113
>gi|260788526|ref|XP_002589300.1| hypothetical protein BRAFLDRAFT_268096 [Branchiostoma floridae]
gi|229274477|gb|EEN45311.1| hypothetical protein BRAFLDRAFT_268096 [Branchiostoma floridae]
Length = 90
Score = 40.8 bits (94), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ IW+ + + + G + GFD Y+N+VL+D E + + R+ L
Sbjct: 15 PINLIFRYLQNRSRIQIWLYEQTNMRIEGHIIGFDEYMNLVLDDAEEIHLKTKNRK--PL 72
Query: 66 DQILLNGNNIAIL 78
+ILL G+NI ++
Sbjct: 73 GRILLKGDNITLI 85
>gi|195573319|ref|XP_002104641.1| GD21053 [Drosophila simulans]
gi|194200568|gb|EDX14144.1| GD21053 [Drosophila simulans]
Length = 218
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + K++V M+ ++EL G L FD ++NMVL D E T E
Sbjct: 18 PLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVE 66
>gi|294952865|ref|XP_002787488.1| Small nuclear ribonucleoprotein E, putative [Perkinsus marinus
ATCC 50983]
gi|239902490|gb|EER19284.1| Small nuclear ribonucleoprotein E, putative [Perkinsus marinus
ATCC 50983]
Length = 93
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 9 LPSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK 64
+P LI R + K +W+ D + G + GFD Y+N+VL+D E + RR
Sbjct: 13 MPINLIFRYLTEKTRIVVWLYDHKDLRMEGVILGFDEYMNVVLDDAEEVNTKKDTRR--P 70
Query: 65 LDQILLNGNNIAIL 78
+ +ILL G+NI ++
Sbjct: 71 VGRILLKGDNITLM 84
>gi|58261590|ref|XP_568205.1| U6 snRNA binding protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134115921|ref|XP_773347.1| hypothetical protein CNBI2880 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50255971|gb|EAL18700.1| hypothetical protein CNBI2880 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57230287|gb|AAW46688.1| U6 snRNA binding protein, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 131
Score = 40.8 bits (94), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 11 SELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVT-EYEITAEGRRITKLDQIL 69
++ +D+ I K G +E G LKG+D +N+V++DV EYE +GR L ++
Sbjct: 30 AQFVDKSIRVKFM----GGREATGILKGYDQLMNLVMDDVVEEYE---DGRPTRSLGLVV 82
Query: 70 LNGNNIAILVP 80
L G NI ++ P
Sbjct: 83 LRGPNIVLVSP 93
>gi|332262690|ref|XP_003280392.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Nomascus leucogenys]
Length = 102
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+EL G L +D ++NM+L DV E T E
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
>gi|315041917|ref|XP_003170335.1| LSM domain-containing protein [Arthroderma gypseum CBS 118893]
gi|311345369|gb|EFR04572.1| LSM domain-containing protein [Arthroderma gypseum CBS 118893]
Length = 95
Score = 40.8 bits (94), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 43/71 (60%), Gaps = 6/71 (8%)
Query: 12 ELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEIT----AEGRRITKLDQ 67
+L+ + IW+ + + G ++GFD ++N+V++D E ++ AE RR +L Q
Sbjct: 22 KLLQQRTTVSIWLYEQLAVRIEGKIRGFDEFMNLVVDDAVEVKLATKTEAESRR--QLGQ 79
Query: 68 ILLNGNNIAIL 78
ILL G+N++++
Sbjct: 80 ILLKGDNVSLI 90
>gi|25012398|gb|AAN71307.1| RE11655p [Drosophila melanogaster]
Length = 103
Score = 40.8 bits (94), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + K++V M+ ++EL G L FD ++NMVL D E T E
Sbjct: 18 PLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVE 66
>gi|409043237|gb|EKM52720.1| hypothetical protein PHACADRAFT_261323 [Phanerochaete carnosa
HHB-10118-sp]
Length = 94
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 35/65 (53%)
Query: 16 RCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNI 75
+ + +I V G +E+ G LKGFD +N+VL+DV E T +L ++L G +
Sbjct: 14 KYVNERIRVKFTGGREVTGVLKGFDQLLNLVLDDVEEQLHTEPLPSTRQLGLVVLRGPTL 73
Query: 76 AILVP 80
+L P
Sbjct: 74 TLLSP 78
>gi|320591988|gb|EFX04427.1| small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 86
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + +++V + G ++++G L+G+DV++N+VL++ E +G K+ +++ GN
Sbjct: 8 LKKYLDKRLFVQLNGSRKVIGVLRGYDVFLNIVLDEAVE---EKDGGEKVKIGMVVIRGN 64
Query: 74 NIAIL 78
+I +L
Sbjct: 65 SIVML 69
>gi|405119724|gb|AFR94496.1| U6 snRNA binding protein [Cryptococcus neoformans var. grubii
H99]
Length = 131
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 8/71 (11%)
Query: 11 SELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVT-EYEITAEGRRITKLDQIL 69
++ +D+ I K G +E G LKG+D +N+V++DV EYE +GR L ++
Sbjct: 30 AQFVDKSIRVKFM----GGREATGILKGYDQLMNLVMDDVVEEYE---DGRPTRSLGLVV 82
Query: 70 LNGNNIAILVP 80
L G NI ++ P
Sbjct: 83 LRGPNIVLVSP 93
>gi|357615889|gb|EHJ69888.1| LSM Sm-like protein family member [Danaus plexippus]
Length = 102
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P +LI + +I+V M+ ++EL G L +D ++NMVL D E T E T +
Sbjct: 16 PLDLIRLSLDERIYVKMRNERELRGKLHAYDQHLNMVLGDAEETITTVEIDEETYEEVYR 75
Query: 70 LNGNNIAILVPGG 82
N NI +L G
Sbjct: 76 TNKRNIPMLFVRG 88
>gi|389602182|ref|XP_001566763.2| putative small nuclear ribonucleoprotein polypeptide e
[Leishmania braziliensis MHOM/BR/75/M2904]
gi|322505349|emb|CAM40282.2| putative small nuclear ribonucleoprotein polypeptide e
[Leishmania braziliensis MHOM/BR/75/M2904]
Length = 86
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 6/77 (7%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P+ ++ R + S +W++ L G L G+D ++N+VL D TE + + R L
Sbjct: 11 PTGVVHRFMQSHQRVCVWLVHDSHTRLEGNLLGYDEFMNVVLGDTTETNLRNDKR--YNL 68
Query: 66 DQILLNGNNIAILVPGG 82
+ILL +N+ ++ P G
Sbjct: 69 GKILLRSDNVGVIHPIG 85
>gi|440801773|gb|ELR22778.1| LSM domain containing protein [Acanthamoeba castellanii str.
Neff]
Length = 135
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 18 IGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI 77
+ +I V+++ ++L+G L+ FD Y N+VLE E E L L+ G+NI +
Sbjct: 25 VDHRILVVLQDGRKLLGVLRSFDQYANLVLEQTIERIYVGEQYAEKNLGLFLVRGDNIVL 84
Query: 78 LVP 80
L P
Sbjct: 85 LGP 87
>gi|24649486|ref|NP_732931.1| LSm3, isoform A [Drosophila melanogaster]
gi|281362412|ref|NP_001163707.1| LSm3, isoform B [Drosophila melanogaster]
gi|23172108|gb|AAN13967.1| LSm3, isoform A [Drosophila melanogaster]
gi|189181823|gb|ACD81688.1| FI09213p [Drosophila melanogaster]
gi|272477132|gb|ACZ95002.1| LSm3, isoform B [Drosophila melanogaster]
Length = 103
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + K++V M+ ++EL G L FD ++NMVL D E T E
Sbjct: 18 PLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVE 66
>gi|312068840|ref|XP_003137402.1| hypothetical protein LOAG_01816 [Loa loa]
Length = 130
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 11/75 (14%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY--------EITAEGRRITKL 65
+ R I K+ V +G +E G LKG+D +N+VL++ EY ++T E R +L
Sbjct: 47 LSRFIDKKVRVKFQGGREASGILKGYDALINLVLDNAVEYVRDTEDPQKVTEETR---QL 103
Query: 66 DQILLNGNNIAILVP 80
I+ G I ++ P
Sbjct: 104 GLIVARGTAITVVAP 118
>gi|347841002|emb|CCD55574.1| similar to U6 snRNA-associated Sm-like protein LSm3 [Botryotinia
fuckeliana]
Length = 98
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P +L+ C+ ++V ++GD+EL G L +D + N+VL DV E
Sbjct: 14 PLDLVRLCLDEVVYVKLRGDRELKGRLHAYDSHCNLVLGDVVE 56
>gi|307104511|gb|EFN52764.1| hypothetical protein CHLNCDRAFT_26410 [Chlorella variabilis]
Length = 99
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P +LI + K++V +KG++EL G L +D ++NM+L DV E
Sbjct: 11 PLDLIRLSLDEKVYVKLKGERELRGKLHAYDQHLNMILGDVEE 53
>gi|189208804|ref|XP_001940735.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187976828|gb|EDU43454.1| conserved hypothetical protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 131
Score = 40.8 bits (94), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR-RITKLDQILLNG 72
+ + + +I V G +E++GTLKG+D +N+VL++V E EG R KL I+ G
Sbjct: 48 LSKYMDKQITVKFSGGREVIGTLKGYDQLMNLVLDEVKEALTDDEGNIRYRKLGLIVARG 107
Query: 73 NNIAILVP 80
+ ++ P
Sbjct: 108 TLLVVISP 115
>gi|307178237|gb|EFN67022.1| U6 snRNA-associated Sm-like protein LSm3 [Camponotus floridanus]
Length = 98
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P +LI + +I+V M+ ++EL G L FD ++NMVL DV E
Sbjct: 16 PLDLIKLSLEERIYVKMRNERELRGKLHAFDQHLNMVLGDVEE 58
>gi|74747670|sp|Q5VYJ4.1|RUEL1_HUMAN RecName: Full=Putative small nuclear ribonucleoprotein
polypeptide E-like protein 1
Length = 92
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + ++ G + GFD Y+N+VL+D E + R+ +L
Sbjct: 17 PINLIFRYLQNRSQIQVWLYEQVNMQIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 74
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI +L
Sbjct: 75 GRIMLKGDNITLL 87
>gi|224004408|ref|XP_002295855.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|209585887|gb|ACI64572.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 109
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 20 SKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
++ V+++ + LVGTL+ FD + NMVLED +E I E
Sbjct: 15 QRMLVVLRDGRHLVGTLRTFDQFANMVLEDTSERRILGE 53
>gi|212541212|ref|XP_002150761.1| small nuclear ribonucleoprotein SmG, putative [Talaromyces
marneffei ATCC 18224]
gi|210068060|gb|EEA22152.1| small nuclear ribonucleoprotein SmG, putative [Talaromyces
marneffei ATCC 18224]
Length = 77
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 46/65 (70%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + +++V + G+++++G L+G+DV++N+VL+D E + A+G + +L +++ GN
Sbjct: 8 LKKYMEKRLFVQLNGNRKVIGILRGYDVFMNIVLDDAVEEK--ADGGK-DRLGMVVIRGN 64
Query: 74 NIAIL 78
++ +L
Sbjct: 65 SVVML 69
>gi|169861670|ref|XP_001837469.1| hypothetical protein CC1G_01381 [Coprinopsis cinerea
okayama7#130]
gi|116501490|gb|EAU84385.1| hypothetical protein CC1G_01381 [Coprinopsis cinerea
okayama7#130]
Length = 95
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 45/81 (55%), Gaps = 10/81 (12%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE-----GRRIT- 63
P +LI + +++V ++GD+E+ G L +D ++N++L DV E + + G+ +
Sbjct: 11 PFDLIRLSLSERVFVKLRGDREMTGILHAYDGHMNLILSDVEETIMIVDTDAPNGQGVVN 70
Query: 64 ----KLDQILLNGNNIAILVP 80
K+D + + G+ + ++ P
Sbjct: 71 IAKRKMDMLFVRGDGVILVSP 91
>gi|148226114|ref|NP_001085570.1| small nuclear ribonucleoprotein polypeptide E [Xenopus laevis]
gi|49256559|gb|AAH72956.1| MGC82471 protein [Xenopus laevis]
Length = 92
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + + G + GFD Y+N+VL+D E + + R+ +L
Sbjct: 17 PINLIFRYLQNRSRVQVWLYEQVNMRIEGCIIGFDEYMNIVLDDAEEIHLKTKSRK--QL 74
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI +L
Sbjct: 75 GRIMLKGDNITLL 87
>gi|195144968|ref|XP_002013468.1| GL23390 [Drosophila persimilis]
gi|198477437|ref|XP_002136616.1| GA29226 [Drosophila pseudoobscura pseudoobscura]
gi|194102411|gb|EDW24454.1| GL23390 [Drosophila persimilis]
gi|198142908|gb|EDY71620.1| GA29226 [Drosophila pseudoobscura pseudoobscura]
Length = 103
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + K++V M+ ++EL G L FD ++NMVL D E T E
Sbjct: 18 PLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVE 66
>gi|55632867|ref|XP_520443.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Pan troglodytes]
Length = 92
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + ++ G + GFD Y+N+VL+D E + R+ +L
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEQVNMQIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 74
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI +L
Sbjct: 75 GRIMLKGDNITLL 87
>gi|367053583|ref|XP_003657170.1| hypothetical protein THITE_2122649 [Thielavia terrestris NRRL
8126]
gi|347004435|gb|AEO70834.1| hypothetical protein THITE_2122649 [Thielavia terrestris NRRL
8126]
Length = 90
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 40/58 (68%), Gaps = 3/58 (5%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
+IW+ + +VGT++GFD ++N+V++ +++ T E RR L QILL G+N++++
Sbjct: 31 QIWLYEQLSIRIVGTIRGFDEFMNLVVKQISKTNDT-ETRR--PLGQILLKGDNVSLI 85
>gi|195452910|ref|XP_002073554.1| GK14178 [Drosophila willistoni]
gi|194169639|gb|EDW84540.1| GK14178 [Drosophila willistoni]
Length = 256
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + K++V M+ ++EL G L FD ++NMVL D E T E
Sbjct: 171 PLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVE 219
>gi|451997874|gb|EMD90339.1| hypothetical protein COCHEDRAFT_1139604 [Cochliobolus
heterostrophus C5]
Length = 96
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 10/82 (12%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEG---------R 60
P +L+ CI + + ++GD+EL G L +D + N+VL DV E AE R
Sbjct: 10 PLDLVRLCIDEIVILKLRGDRELKGRLHAYDSHCNLVLGDVEETIYIAEEDDDDQEPRVR 69
Query: 61 RITKLDQIL-LNGNNIAILVPG 81
+ K ++L + G+++ ++ P
Sbjct: 70 TVKKQSEMLFIRGDSVVLIAPA 91
>gi|409050337|gb|EKM59814.1| hypothetical protein PHACADRAFT_170423 [Phanerochaete carnosa
HHB-10118-sp]
Length = 95
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 45/83 (54%), Gaps = 12/83 (14%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEI-------TAEGRRI 62
P +LI + +++V ++GD+EL G L +D ++N++L DV E + EG++
Sbjct: 10 PFDLIRLSLSERVFVKLRGDRELSGILHAYDGHMNLILSDVEETILIVDQIDGAGEGQQT 69
Query: 63 T-----KLDQILLNGNNIAILVP 80
K++ + + G+ + ++ P
Sbjct: 70 VNMAKRKMEMLFVRGDGVILVSP 92
>gi|85107508|ref|XP_962388.1| hypothetical protein NCU06354 [Neurospora crassa OR74A]
gi|28923993|gb|EAA33152.1| predicted protein [Neurospora crassa OR74A]
Length = 96
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 42/63 (66%), Gaps = 7/63 (11%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITA-----EGRRITKLDQILLNGNNI 75
+IW+ + ++GT++GFD ++N+V+++ E ++ + E RR +L QILL G+N+
Sbjct: 31 QIWLYEQLHIRIIGTIRGFDEFMNLVIDNAIEVKLVSKTNETEERR--ELGQILLKGDNV 88
Query: 76 AIL 78
+++
Sbjct: 89 SLI 91
>gi|399217457|emb|CCF74344.1| unnamed protein product [Babesia microti strain RI]
Length = 499
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 18 IGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL--DQILLNGNNI 75
+GS IWV ++ D VG K FD Y N+VL D + + E R + L +++ G +I
Sbjct: 22 LGSLIWVSLRDDTFYVGIFKTFDQYGNVVLSDAVQKIVVPEKRIFSDLYNGHLIIRGESI 81
Query: 76 AILV 79
A
Sbjct: 82 AYFC 85
>gi|289742031|gb|ADD19763.1| small nuclear ribonucleoprotein LsM3 [Glossina morsitans
morsitans]
Length = 102
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + K++V M+ ++EL G L FD ++NMVL D E T E
Sbjct: 17 PLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVE 65
>gi|170588931|ref|XP_001899227.1| U6 snRNA-associated Sm-like protein LSm3 [Brugia malayi]
gi|158593440|gb|EDP32035.1| U6 snRNA-associated Sm-like protein LSm3, putative [Brugia
malayi]
Length = 136
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+E+ G L FD ++NM+L V E T E
Sbjct: 51 PLDLIRLSLDERIYVKMRNDREVRGRLHAFDQHLNMILSQVEETVTTVE 99
>gi|425770497|gb|EKV08967.1| Small nuclear ribonucleoprotein (LSM7), putative [Penicillium
digitatum Pd1]
gi|425771863|gb|EKV10295.1| Small nuclear ribonucleoprotein (LSM7), putative [Penicillium
digitatum PHI26]
Length = 125
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK-LDQILLNG 72
+ + + ++ V G +E++GTLKG+D +N+VL+DV E EG T+ + I+ G
Sbjct: 42 LSKYMDKEVQVKFNGGREVIGTLKGYDQLMNLVLDDVKETMRDEEGNTTTRSMGLIVARG 101
Query: 73 NNIAILVPG-GS---PDP 86
I ++ P GS P+P
Sbjct: 102 TLIVLISPADGSEEIPNP 119
>gi|410669462|ref|YP_006921833.1| small ribonucleoprotein [Methanolobus psychrophilus R15]
gi|409168590|gb|AFV22465.1| small ribonucleoprotein [Methanolobus psychrophilus R15]
Length = 56
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 4/56 (7%)
Query: 26 MKGDKELV-GTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVP 80
MKGD L+ GTL D Y+N+ L D E A G R+ L ++L GNNI +++P
Sbjct: 1 MKGDLHLLEGTLSSADDYMNLHLVDTVE---IANGERLRSLGSVVLRGNNIILVIP 53
>gi|350297191|gb|EGZ78168.1| U6 snRNA-associated Sm-like protein LSm7 [Neurospora tetrasperma
FGSC 2509]
Length = 82
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 20 SKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK-LDQILLNGNNIAIL 78
+I V G +E+ GTLKG+D +N+VL+DV E EG T+ L ++ G + ++
Sbjct: 3 QRITVKFNGGREVTGTLKGYDALMNLVLDDVQEAVRDEEGNETTRPLGLVVARGTLLVVI 62
Query: 79 VP 80
P
Sbjct: 63 SP 64
>gi|157128750|ref|XP_001661504.1| SM protein G, putative [Aedes aegypti]
gi|108872482|gb|EAT36707.1| AAEL011233-PA [Aedes aegypti]
Length = 91
Score = 40.8 bits (94), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + G + GFD Y+N+VL++ EY + RR L
Sbjct: 15 PINLIFRYLQNRSRVQVWLYENTHLRIEGHIVGFDEYMNLVLDEAEEYNTKKQNRR--PL 72
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI ++
Sbjct: 73 GRIMLKGDNITLI 85
>gi|443925698|gb|ELU44474.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 122
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 29/43 (67%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P +LI + +++V ++GD+EL G L +D ++N+++ DV E
Sbjct: 13 PFDLIRLSLSERVYVKLRGDRELTGVLHAYDGHMNLIMSDVEE 55
>gi|392575745|gb|EIW68877.1| hypothetical protein TREMEDRAFT_39244 [Tremella mesenterica DSM
1558]
Length = 94
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 37/65 (56%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
++ + + VI+ + +VG L+G+D N++L D E E + EG + L ++ G+
Sbjct: 4 VEAYVDHTVQVILYDGRVIVGKLRGYDPRTNLILSDCVEREYSLEGVEMVPLGLYMIKGD 63
Query: 74 NIAIL 78
N+AI+
Sbjct: 64 NVAII 68
>gi|254166807|ref|ZP_04873661.1| hypothetical protein ABOONEI_1899 [Aciduliprofundum boonei T469]
gi|254167437|ref|ZP_04874289.1| hypothetical protein ABOONEI_2250 [Aciduliprofundum boonei T469]
gi|289596330|ref|YP_003483026.1| Like-Sm ribonucleoprotein core [Aciduliprofundum boonei T469]
gi|197623700|gb|EDY36263.1| hypothetical protein ABOONEI_2250 [Aciduliprofundum boonei T469]
gi|197624417|gb|EDY36978.1| hypothetical protein ABOONEI_1899 [Aciduliprofundum boonei T469]
gi|289534117|gb|ADD08464.1| Like-Sm ribonucleoprotein core [Aciduliprofundum boonei T469]
Length = 72
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 9 LPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQI 68
LP ++++ + +I +++K ++ L G L G+D Y+NMVL D E T E R +L +
Sbjct: 3 LPLKMLENFLNKRISLLLKDNRVLEGKLVGYDDYMNMVLMDTEEK--TEEMTR--RLGTV 58
Query: 69 LLNGNNIA 76
+L GNN+
Sbjct: 59 ILRGNNVV 66
>gi|448321855|ref|ZP_21511330.1| Sm ribonucleoprotein-like protein [Natronococcus amylolyticus DSM
10524]
gi|445602907|gb|ELY56878.1| Sm ribonucleoprotein-like protein [Natronococcus amylolyticus DSM
10524]
Length = 75
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++++ +G ++ V +K E VG L G+D ++N+VLEDV+ D +
Sbjct: 5 PLDVLEASLGERVTVRLKSGDEYVGDLTGYDQHMNLVLEDVSRAGDREVDDEAPVEDTTI 64
Query: 70 LNGNNIAILVP 80
+ G+N+ + P
Sbjct: 65 IRGDNVVSITP 75
>gi|336270688|ref|XP_003350103.1| hypothetical protein SMAC_00994 [Sordaria macrospora k-hell]
gi|380095497|emb|CCC06970.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 96
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 40/61 (65%), Gaps = 3/61 (4%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEI---TAEGRRITKLDQILLNGNNIAI 77
+IW+ + ++GT++GFD ++N+V+++ E ++ T E +L QILL G+N+++
Sbjct: 31 QIWLYEQLHIRIIGTIRGFDEFMNLVIDNAIEVKLVSKTNEKEERRELGQILLKGDNVSL 90
Query: 78 L 78
+
Sbjct: 91 I 91
>gi|390937928|ref|YP_006401666.1| Small nuclear ribonucleoprotein, LSM family [Desulfurococcus
fermentans DSM 16532]
gi|390191035|gb|AFL66091.1| Small nuclear ribonucleoprotein, LSM family [Desulfurococcus
fermentans DSM 16532]
Length = 93
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 2/69 (2%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P +++ G + V +KG E VGTL D +N+VL D TEY + +GR ++ +I+
Sbjct: 13 PLKVLKSAEGQVVLVRIKGGIEYVGTLDLIDPTMNIVLSDCTEY--SGDGRPTSRYGKII 70
Query: 70 LNGNNIAIL 78
+ G+++ +
Sbjct: 71 IRGSHVEFI 79
>gi|312074108|ref|XP_003139822.1| U6 snRNA-associated Sm-like protein LSm3 [Loa loa]
Length = 136
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+E+ G L FD ++NM+L V E T E
Sbjct: 51 PLDLIRLSLDERIYVKMRNDREVRGRLHAFDQHLNMILSQVEETVTTVE 99
>gi|242059351|ref|XP_002458821.1| hypothetical protein SORBIDRAFT_03g040930 [Sorghum bicolor]
gi|194699902|gb|ACF84035.1| unknown [Zea mays]
gi|195628156|gb|ACG35908.1| U6 snRNA-associated Sm-like protein LSm3 [Zea mays]
gi|195643108|gb|ACG41022.1| U6 snRNA-associated Sm-like protein LSm3 [Zea mays]
gi|241930796|gb|EES03941.1| hypothetical protein SORBIDRAFT_03g040930 [Sorghum bicolor]
Length = 98
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V ++ D+EL G L +D ++NM+L DV E T E
Sbjct: 13 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 61
>gi|84995764|ref|XP_952604.1| u6 snrna-associated sm-like protein Lsm3 [Theileria annulata
strain Ankara]
gi|65302765|emb|CAI74872.1| u6 snrna-associated sm-like protein Lsm3, putative [Theileria
annulata]
Length = 94
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITA--------EGRR 61
P ++I + I++ K +ELVG L FD + NMVL DVTE T E +
Sbjct: 10 PLDMIRLNLDEVIYLKCKNGRELVGRLHAFDEHCNMVLSDVTETITTVDADDNSKNETTK 69
Query: 62 ITKLDQ--ILLNGNNIAIL 78
+TK D I + G+++ +L
Sbjct: 70 VTKRDNGTIFVRGDSLVLL 88
>gi|429853426|gb|ELA28500.1| small nuclear ribonucleoprotein [Colletotrichum gloeosporioides
Nara gc5]
Length = 104
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + +++V + G ++++G L+G+DV++N+VL++ E EG +L +++ GN
Sbjct: 8 LKKYLDKRLFVQLNGSRKVIGVLRGYDVFLNIVLDEAVE---EKEGGEKVRLGMVVIRGN 64
Query: 74 NI 75
++
Sbjct: 65 SV 66
>gi|300681475|emb|CBH32569.1| U6 snRNA-associated Sm-like protein, expressed [Triticum
aestivum]
Length = 98
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V ++ D+EL G L +D ++NM+L DV E T E
Sbjct: 13 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 61
>gi|294956367|ref|XP_002788910.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|239904570|gb|EER20706.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
Length = 94
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 9 LPSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK 64
+P LI R + K +W+ D + G + GFD Y+N+VL+D E + RR
Sbjct: 13 MPINLIFRYLTEKTRIVVWLYDHKDLRMEGVILGFDEYMNVVLDDAEEVNTKKDTRR--P 70
Query: 65 LDQILLNGNNIAIL 78
+ +ILL G+NI ++
Sbjct: 71 VGRILLKGDNITLM 84
>gi|224062892|ref|XP_002300922.1| predicted protein [Populus trichocarpa]
gi|222842648|gb|EEE80195.1| predicted protein [Populus trichocarpa]
Length = 97
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V ++ D+EL G L +D ++NM+L DV E T E
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
>gi|326501494|dbj|BAK02536.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 121
Score = 40.8 bits (94), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V ++ D+EL G L +D ++NM+L DV E T E
Sbjct: 36 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 84
>gi|440492813|gb|ELQ75351.1| Small nuclear ribonucleoprotein (snRNP) SMF [Trachipleistophora
hominis]
Length = 113
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 8/73 (10%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
NP Q L S L G +I + +K + + GTL GFD N+ + V+E+ E R +
Sbjct: 39 NPKQFLKSRL-----GKRIRISLKWNVDYEGTLDGFDDNFNIEVSSVSEF---VESRMVG 90
Query: 64 KLDQILLNGNNIA 76
KL ++++ NNI
Sbjct: 91 KLKKMVIRCNNIK 103
>gi|357126029|ref|XP_003564691.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform
1 [Brachypodium distachyon]
Length = 98
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V ++ D+EL G L +D ++NM+L DV E T E
Sbjct: 13 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 61
>gi|440804414|gb|ELR25291.1| Hypothetical protein ACA1_290670, partial [Acanthamoeba
castellanii str. Neff]
Length = 96
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 27/40 (67%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY 53
+DR +G ++ V G +E+ G LKG+D VN+VL++ E+
Sbjct: 7 LDRYLGQRVTVKFSGGREVTGLLKGYDTLVNLVLDETKEF 46
>gi|224085111|ref|XP_002307496.1| predicted protein [Populus trichocarpa]
gi|359493111|ref|XP_002266320.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform
1 [Vitis vinifera]
gi|222856945|gb|EEE94492.1| predicted protein [Populus trichocarpa]
Length = 97
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V ++ D+EL G L +D ++NM+L DV E T E
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
>gi|19112516|ref|NP_595724.1| Sm snRNP core protein Sme1 [Schizosaccharomyces pombe 972h-]
gi|74638881|sp|Q9USZ3.1|RUXE_SCHPO RecName: Full=Small nuclear ribonucleoprotein E; Short=snRNP-E;
AltName: Full=Sm protein E; Short=Sm-E; Short=SmE
gi|6165482|emb|CAB59808.1| Sm snRNP core protein Sme1 [Schizosaccharomyces pombe]
Length = 84
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 12 ELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLN 71
+L+ + IW+ + D L G ++GFD ++N+VL+D + + R +L +ILL
Sbjct: 18 KLLQQHTPVSIWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQVDAKNNKR---ELGRILLK 74
Query: 72 GNNIAIL 78
G+NI ++
Sbjct: 75 GDNITLI 81
>gi|293356012|ref|XP_002728814.1| PREDICTED: small nuclear ribonucleoprotein E-like [Rattus
norvegicus]
gi|392337758|ref|XP_003753347.1| PREDICTED: small nuclear ribonucleoprotein E-like [Rattus
norvegicus]
Length = 92
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + ++ G + GFD Y+N+VL+D E + R+ +L
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEQVNMQIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 74
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI +L
Sbjct: 75 GRIMLKGDNITLL 87
>gi|449690492|ref|XP_002158063.2| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like, partial
[Hydra magnipapillata]
Length = 72
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P +L+ + K++V M+ D+EL G L +D ++NMVL DV E
Sbjct: 13 PLDLMKFSLDEKVYVKMRNDRELRGKLHAYDQHLNMVLGDVEE 55
>gi|390178194|ref|XP_002137483.2| GA30187 [Drosophila pseudoobscura pseudoobscura]
gi|388859360|gb|EDY68041.2| GA30187 [Drosophila pseudoobscura pseudoobscura]
Length = 100
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + K++V M+ ++EL G L FD ++NMVL D E T E
Sbjct: 15 PLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVE 63
>gi|145356505|ref|XP_001422469.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582712|gb|ABP00786.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 97
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P +LI + K++V ++GD+E G L +D ++NM+L DV E
Sbjct: 13 PLDLIRLALDEKVYVKLRGDREARGRLHAYDQHLNMILGDVEE 55
>gi|115441259|ref|NP_001044909.1| Os01g0866700 [Oryza sativa Japonica Group]
gi|56785201|dbj|BAD81919.1| small nuclear ribonucleoprotein-like [Oryza sativa Japonica
Group]
gi|113534440|dbj|BAF06823.1| Os01g0866700 [Oryza sativa Japonica Group]
gi|125528497|gb|EAY76611.1| hypothetical protein OsI_04561 [Oryza sativa Indica Group]
gi|125572761|gb|EAZ14276.1| hypothetical protein OsJ_04201 [Oryza sativa Japonica Group]
gi|215708805|dbj|BAG94074.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765758|dbj|BAG87455.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 104
Score = 40.4 bits (93), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V ++ D+EL G L +D ++NM+L DV E T E
Sbjct: 19 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 67
>gi|255583342|ref|XP_002532432.1| snrnp sm protein, putative [Ricinus communis]
gi|223527852|gb|EEF29947.1| snrnp sm protein, putative [Ricinus communis]
Length = 97
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V ++ D+EL G L +D ++NM+L DV E T E
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 60
>gi|388493932|gb|AFK35032.1| unknown [Lotus japonicus]
gi|388511495|gb|AFK43809.1| unknown [Lotus japonicus]
Length = 97
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V ++ D+EL G L +D ++NM+L DV E T E
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
>gi|432329499|ref|YP_007247642.1| small nuclear ribonucleoprotein [Methanoregula formicicum SMSP]
gi|432136208|gb|AGB01135.1| small nuclear ribonucleoprotein [Methanoregula formicicum SMSP]
Length = 75
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 10 PSELIDRCIGSK-IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQI 68
P +++D+ + + + V +KG +E+ G L+G+DV++N+VL+ E E ++ K+ +
Sbjct: 5 PLDILDQVLNRQPVIVSLKGGREIRGVLQGYDVHMNLVLDKAEE----VENGQVQKVGTL 60
Query: 69 LLNGNNIAILVP 80
++ G+N+ + P
Sbjct: 61 IVRGDNVIYISP 72
>gi|387598163|gb|AFJ91737.1| Lsm3 protein [Ostrea edulis]
Length = 103
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ ++EL G L +D ++NM+L DV E T E
Sbjct: 17 PLDLIRLSLDERIYVKMRNERELRGRLNAYDQHLNMILGDVEETVTTVE 65
>gi|296421463|ref|XP_002840284.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636499|emb|CAZ84475.1| unnamed protein product [Tuber melanosporum]
Length = 76
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + +++V + G ++++G L+G+DV++N+VL+D E + E RI +++ GN
Sbjct: 8 LKKYLDKRLFVQLNGSRKVIGILRGYDVFLNIVLDDAIEEKDGGEKVRIG---TVVIRGN 64
Query: 74 NIAIL 78
++ +L
Sbjct: 65 SVVML 69
>gi|351722343|ref|NP_001235961.1| uncharacterized protein LOC100499782 [Glycine max]
gi|255626487|gb|ACU13588.1| unknown [Glycine max]
Length = 97
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V ++ D+EL G L +D ++NM+L DV E T E
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
>gi|449497088|ref|XP_004160308.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Cucumis
sativus]
Length = 97
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V ++ D+EL G L +D ++NM+L DV E T E
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEESVTTVE 60
>gi|402589800|gb|EJW83731.1| hypothetical protein WUBG_05358 [Wuchereria bancrofti]
Length = 101
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 11/75 (14%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY--------EITAEGRRITKL 65
+ R I K+ V +G +E G LKG+D +N+VL++ EY ++T E R +L
Sbjct: 18 LSRFIDKKVRVKFQGGREASGILKGYDALINLVLDNAVEYVRDTEDPQKMTEETR---QL 74
Query: 66 DQILLNGNNIAILVP 80
I+ G I ++ P
Sbjct: 75 GLIVARGTAITVVAP 89
>gi|302404042|ref|XP_002999859.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
gi|261361361|gb|EEY23789.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
Length = 85
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + +++V + G ++++G L+G+DV++N+VL++ E EG ++ +++ GN
Sbjct: 8 LKKYLDKRLFVQLNGGRKVIGVLRGYDVFLNIVLDEAVE---EKEGGEKVRIGMVVIRGN 64
Query: 74 NIAIL 78
++ +L
Sbjct: 65 SVVML 69
>gi|170585954|ref|XP_001897746.1| U6 snRNA-associated Sm-like protein LSm7 [Brugia malayi]
gi|158594770|gb|EDP33349.1| U6 snRNA-associated Sm-like protein LSm7, putative [Brugia
malayi]
Length = 101
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 11/75 (14%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY--------EITAEGRRITKL 65
+ R I K+ V +G +E G LKG+D +N+VL++ EY ++T E R +L
Sbjct: 18 LSRFIDKKVRVKFQGGREASGILKGYDALINLVLDNAVEYVRDTEDPQKMTEETR---QL 74
Query: 66 DQILLNGNNIAILVP 80
I+ G I ++ P
Sbjct: 75 GLIVARGTAITVVAP 89
>gi|357475053|ref|XP_003607812.1| U6 snRNA-associated Sm-like protein LSm3 [Medicago truncatula]
gi|355508867|gb|AES90009.1| U6 snRNA-associated Sm-like protein LSm3 [Medicago truncatula]
Length = 98
Score = 40.4 bits (93), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V ++ D+EL G L +D ++NM+L DV E T E
Sbjct: 13 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 61
>gi|313228047|emb|CBY23197.1| unnamed protein product [Oikopleura dioica]
Length = 90
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 9 LPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQI 68
L + I +IW+ + L G + GFD Y+N+VL+DV E + +R + +I
Sbjct: 18 LVFRFFQKKIRVQIWLYDVVNLRLEGIIVGFDEYMNLVLDDVEEMHVKTHFKR--NVGKI 75
Query: 69 LLNGNNIAIL 78
LL G+NI ++
Sbjct: 76 LLKGDNITLI 85
>gi|303288678|ref|XP_003063627.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454695|gb|EEH52000.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 95
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +++V ++GD+E+ G L +D ++NM+L DV E T E
Sbjct: 11 PLDLIRLSLDERVYVKLRGDREIRGKLHAYDQHLNMILGDVEETITTVE 59
>gi|332222659|ref|XP_003260491.1| PREDICTED: small nuclear ribonucleoprotein E-like [Nomascus
leucogenys]
Length = 92
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + S+ +W+ + + ++ G + GFD Y+N+VL++ E + R+ +L
Sbjct: 17 PINLIFRYLQSRSRIQVWLYEQVNMQIEGCIIGFDEYMNLVLDEAEEIHSKTKSRK--QL 74
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI +L
Sbjct: 75 GRIMLKGDNITLL 87
>gi|307354786|ref|YP_003895837.1| small nuclear riboprotein-like protein [Methanoplanus
petrolearius DSM 11571]
gi|307158019|gb|ADN37399.1| Like-Sm ribonucleoprotein core [Methanoplanus petrolearius DSM
11571]
Length = 75
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 32/44 (72%), Gaps = 1/44 (2%)
Query: 10 PSELIDRCIGSK-IWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P E++D+ + K + V +KG +E+ G L+G+DV++N+VLE+ E
Sbjct: 5 PLEILDQALNQKPVIVSLKGGREIRGILQGYDVHMNLVLENAEE 48
>gi|45199029|ref|NP_986058.1| AFR511Cp [Ashbya gossypii ATCC 10895]
gi|44985104|gb|AAS53882.1| AFR511Cp [Ashbya gossypii ATCC 10895]
gi|374109289|gb|AEY98195.1| FAFR511Cp [Ashbya gossypii FDAG1]
Length = 76
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
K+++ + G +++VG L+G+D+++N+VL+D EIT G + D ++ GN+I L
Sbjct: 14 KVFLQLNGARKVVGVLRGYDLFLNVVLDDAV--EITRTGGKHGLGDHTIIRGNSIVSL 69
>gi|449299266|gb|EMC95280.1| hypothetical protein BAUCODRAFT_577920 [Baudoinia compniacensis
UAMH 10762]
Length = 83
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + ++ V + G ++++GTL+G+DV++N+VL++ TE + E +L ++ GN
Sbjct: 8 LKKYLDKRVEVQLNGSRKVMGTLRGYDVFLNIVLDEATESKPNNEK---VRLGMCVIRGN 64
Query: 74 NIAIL 78
++ ++
Sbjct: 65 SVVMM 69
>gi|254567830|ref|XP_002491025.1| Core Sm protein Sm E [Komagataella pastoris GS115]
gi|238030822|emb|CAY68745.1| Core Sm protein Sm E [Komagataella pastoris GS115]
Length = 88
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
+IW+ + + + G +KGFD ++N+V+++ E + + +R KL ++LL G+NI ++
Sbjct: 28 QIWLYEQNNTRINGIIKGFDEFMNVVVDEAIEINLKTQKQR--KLGRLLLKGDNITLI 83
>gi|345566656|gb|EGX49598.1| hypothetical protein AOL_s00078g87 [Arthrobotrys oligospora ATCC
24927]
Length = 75
Score = 40.4 bits (93), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 38/59 (64%), Gaps = 3/59 (5%)
Query: 20 SKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
+++V + G ++++G L+G+D+++N+ ++D E + E RI +++ GN++ +L
Sbjct: 14 KRLFVQLNGSRKIIGVLRGYDIFLNLCMDDCIEEKAGGEKERI---GTVVIRGNSVVML 69
>gi|448090794|ref|XP_004197162.1| Piso0_004401 [Millerozyma farinosa CBS 7064]
gi|448095234|ref|XP_004198193.1| Piso0_004401 [Millerozyma farinosa CBS 7064]
gi|359378584|emb|CCE84843.1| Piso0_004401 [Millerozyma farinosa CBS 7064]
gi|359379615|emb|CCE83812.1| Piso0_004401 [Millerozyma farinosa CBS 7064]
Length = 90
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY-----EITAE 58
NP + P +L+ + + V ++G +E+ G L+G+D + NMVL D EY E
Sbjct: 9 NPQE--PFDLVRYQLDELVLVKLRGAREMKGRLQGYDSHCNMVLSDAVEYIYDLGEEVNS 66
Query: 59 GRRITKLDQILLNGNNIAILVP 80
+ K + + + G+++ ++ P
Sbjct: 67 NPTVKKSEMVFVRGDSVILINP 88
>gi|297459953|ref|XP_002700818.1| PREDICTED: uncharacterized protein LOC100296197 [Bos taurus]
Length = 182
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
++W+ + + ++ G + GFD Y+N++L+D E + R+ +L +I+L G+NI +L
Sbjct: 122 QVWLYEQVNMQIEGCIIGFDEYMNLILDDAEEIHSKTKSRK--QLGRIMLKGDNITLL 177
>gi|70928007|ref|XP_736278.1| small nuclear ribonuclear protein [Plasmodium chabaudi chabaudi]
gi|56510678|emb|CAH79836.1| small nuclear ribonuclear protein, putative [Plasmodium chabaudi
chabaudi]
Length = 54
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 30/39 (76%)
Query: 46 VLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSP 84
VLEDVTEY T +++ K+ +ILLNG NI I+VPGG+P
Sbjct: 1 VLEDVTEYTYTNNVKKVNKIKKILLNGLNITIMVPGGTP 39
>gi|221119660|ref|XP_002154306.1| PREDICTED: small nuclear ribonucleoprotein E-like [Hydra
magnipapillata]
Length = 87
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ IW+ + + + G + GFD Y+N+VL+D E + + ++ +L
Sbjct: 12 PINLIFRYLQNRARIQIWLYEQNNLRIEGHIIGFDEYMNLVLDDAQEVHVKNKTKK--QL 69
Query: 66 DQILLNGNNIAIL 78
+ILL G+NI ++
Sbjct: 70 GRILLKGDNITLI 82
>gi|161527729|ref|YP_001581555.1| like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
gi|160339030|gb|ABX12117.1| Like-Sm ribonucleoprotein core [Nitrosopumilus maritimus SCM1]
Length = 78
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 12 ELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLN 71
+++D I + + +KG+K + G L GFD ++N++L+ + EI AEG L I++
Sbjct: 8 KVLDESINQIVLIKLKGNKTIRGNLLGFDQHMNLLLD--SSEEIPAEGEA-KGLGSIVVR 64
Query: 72 GNNIAILVP 80
G+N+ ++ P
Sbjct: 65 GDNVVMISP 73
>gi|145527883|ref|XP_001449741.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124417330|emb|CAK82344.1| unnamed protein product [Paramecium tetraurelia]
Length = 85
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P +++ I +I++ M+ + EL GTL +D ++NM++ E + KLD +
Sbjct: 7 PLDVLKFSIAQQIYIKMRNNIELKGTLVSYDNHLNMIISKAEETSFQEGIKTKRKLDALY 66
Query: 70 LNGNNIAILVP 80
L G+ I ++ P
Sbjct: 67 LRGDGIILISP 77
>gi|71417383|ref|XP_810555.1| small nuclear ribonucleoprotein SmD2 [Trypanosoma cruzi strain CL
Brener]
gi|70875103|gb|EAN88704.1| small nuclear ribonucleoprotein SmD2, putative [Trypanosoma cruzi]
Length = 111
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 10 PSELIDRCI--GSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQ 67
P ++D + G+++++ + +K LV T+ FD + N+VL DV E + + ++ +
Sbjct: 33 PFSVLDSAMRNGTRVFIQSRFNKSLVATVVAFDKHFNLVLRDVVELAMVNKQQKERSIRN 92
Query: 68 ILLNGNNIAILV 79
+ L G ++ +V
Sbjct: 93 MFLRGGSVVFIV 104
>gi|297480322|ref|XP_002707759.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein
LOC100296197 [Bos taurus]
gi|296482627|tpg|DAA24742.1| TPA: small nuclear ribonucleoprotein polypeptide E-like [Bos
taurus]
Length = 182
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
++W+ + + ++ G + GFD Y+N++L+D E + R+ +L +I+L G+NI +L
Sbjct: 122 QVWLYEQVNMQIEGCIIGFDEYMNLILDDAEEIHSKTKSRK--QLGRIMLKGDNITLL 177
>gi|254565075|ref|XP_002489648.1| Lsm (Like Sm) protein [Komagataella pastoris GS115]
gi|238029444|emb|CAY67367.1| Lsm (Like Sm) protein [Komagataella pastoris GS115]
Length = 84
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P +I C+ K++V ++G +E+VG L +D + N+VL D E
Sbjct: 6 PLNMIKLCLDEKVYVKLRGAREIVGKLHAYDNHCNLVLGDAVE 48
>gi|347966098|ref|XP_003435864.1| AGAP013519-PA [Anopheles gambiae str. PEST]
gi|333470212|gb|EGK97549.1| AGAP013519-PA [Anopheles gambiae str. PEST]
Length = 101
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 29/49 (59%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + KI+V M+ ++EL G L FD ++NMVL D E T E
Sbjct: 15 PLDLIRLSLDEKIYVKMRYERELRGRLHAFDQHLNMVLGDAEETVTTVE 63
>gi|392874340|gb|AFM86002.1| Small nuclear ribonucleoprotein E [Callorhinchus milii]
gi|392875604|gb|AFM86634.1| Small nuclear ribonucleoprotein E [Callorhinchus milii]
gi|392884142|gb|AFM90903.1| Small nuclear ribonucleoprotein E [Callorhinchus milii]
Length = 92
Score = 40.4 bits (93), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + + G + GFD Y+N+VL+D E + ++ R+ L
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHMKSKARK--PL 74
Query: 66 DQILLNGNNIAIL 78
+++L G+NI +L
Sbjct: 75 GRVMLKGDNITLL 87
>gi|330917406|ref|XP_003297804.1| hypothetical protein PTT_08326 [Pyrenophora teres f. teres 0-1]
gi|311329333|gb|EFQ94110.1| hypothetical protein PTT_08326 [Pyrenophora teres f. teres 0-1]
Length = 131
Score = 40.4 bits (93), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR-RITKLDQILLNG 72
+ + + +I V G +E+VGTLKG+D +N+VL++V E +G R KL I+ G
Sbjct: 48 LSKYMDKQITVKFSGGREVVGTLKGYDQLMNLVLDEVKEALTDDQGNIRYRKLGLIVARG 107
Query: 73 NNIAILVP 80
+ ++ P
Sbjct: 108 TLLVVISP 115
>gi|50421915|ref|XP_459516.1| DEHA2E04510p [Debaryomyces hansenii CBS767]
gi|49655184|emb|CAG87742.1| DEHA2E04510p [Debaryomyces hansenii CBS767]
Length = 88
Score = 40.4 bits (93), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEI-TAEGRR-IT 63
Q P +L+ + + V ++G +E+ G L+G+D + NM+L D EY EG+ +T
Sbjct: 9 QQQEPLDLVRYQLDELVLVKLRGAREMKGKLQGYDSHCNMILSDAVEYIYDVPEGQEPVT 68
Query: 64 K-LDQILLNGNNIAILVP 80
K D + + G+++ ++ P
Sbjct: 69 KNTDMVFVRGDSVILISP 86
>gi|403418112|emb|CCM04812.1| predicted protein [Fibroporia radiculosa]
Length = 355
Score = 40.0 bits (92), Expect = 0.16, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 34/49 (69%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRI 62
+ + + K++V ++G +++ GTL+G+D+++N+VL+D TE A+ I
Sbjct: 9 LKKFMDKKLFVHLQGGRKVSGTLRGYDLFLNLVLDDATEETTPAQKHPI 57
>gi|392576848|gb|EIW69978.1| hypothetical protein TREMEDRAFT_68409 [Tremella mesenterica DSM
1558]
Length = 95
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 28/43 (65%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P +L+ +G ++++ ++GD+ L G L +D ++N+VL V E
Sbjct: 12 PLDLVKLSLGERVFIKLRGDRTLTGNLHAYDAHMNLVLSQVEE 54
>gi|307105606|gb|EFN53854.1| hypothetical protein CHLNCDRAFT_36210 [Chlorella variabilis]
Length = 86
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + S+ IW+ D + G + GFD Y+N+VL++ E + + R+ L
Sbjct: 12 PINLIFRFLQSRQKIQIWLYEHNDLRIEGRIIGFDEYMNLVLDEAEEVSVKRKTRK--AL 69
Query: 66 DQILLNGNNIAIL 78
+ILL G+ I ++
Sbjct: 70 GRILLKGDTITLM 82
>gi|346325864|gb|EGX95460.1| small nuclear ribonucleoprotein SmG [Cordyceps militaris CM01]
Length = 85
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 42/67 (62%), Gaps = 5/67 (7%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL--LN 71
+ + + +++V + G ++++G L+G+DV++N+VL+D E EG KL +L +
Sbjct: 8 LKKYLDKRLFVQLNGSRKVIGVLRGYDVFLNIVLDDAFE---EREGGNKAKLGMVLKVIR 64
Query: 72 GNNIAIL 78
GN++ +L
Sbjct: 65 GNSVVML 71
>gi|226469802|emb|CAX70182.1| small nuclear ribonucleoprotein [Schistosoma japonicum]
gi|226469804|emb|CAX70183.1| small nuclear ribonucleoprotein [Schistosoma japonicum]
gi|226487552|emb|CAX74646.1| small nuclear ribonucleoprotein [Schistosoma japonicum]
Length = 105
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + KI+V MK ++EL G L FD ++NM+L +V E T E
Sbjct: 21 PLDLIRLSLDEKIYVKMKRNRELRGILHAFDSHLNMILGNVEETVTTLE 69
>gi|351724771|ref|NP_001236557.1| uncharacterized protein LOC100306547 [Glycine max]
gi|255628849|gb|ACU14769.1| unknown [Glycine max]
Length = 97
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V ++ D+EL G L +D ++NM+L DV E T E
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIITTVE 60
>gi|453085619|gb|EMF13662.1| LSM-domain-containing protein [Mycosphaerella populorum SO2202]
Length = 99
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 11/67 (16%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITA---------EGRRITKLDQILLN 71
+IW+ + + G ++GFD ++N+V++D E + +A EGRR +L QILL
Sbjct: 31 QIWLYEQLGIRIEGKIRGFDEFMNLVIDDAVEVQQSAKGETNEDSKEGRR--ELGQILLK 88
Query: 72 GNNIAIL 78
G+N+ ++
Sbjct: 89 GDNVCLI 95
>gi|426198547|gb|EKV48473.1| hypothetical protein AGABI2DRAFT_203319 [Agaricus bisporus var.
bisporus H97]
Length = 93
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYE--ITAEGRRIT---- 63
P +LI + +++V ++GD+EL G L +D ++N++L DV E + E + T
Sbjct: 12 PFDLIRLSLSERVFVKLRGDRELSGILHAYDGHMNLILSDVEETVMIVDTESNQTTNYAK 71
Query: 64 -KLDQILLNGNNIAILVP 80
K + + + G+ + ++ P
Sbjct: 72 RKWEMLFVRGDGVILVSP 89
>gi|387914532|gb|AFK10875.1| Small nuclear ribonucleoprotein E [Callorhinchus milii]
Length = 92
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + + G + GFD Y+N+VL+D E + ++ R+ L
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHMKSKARK--PL 74
Query: 66 DQILLNGNNIAIL 78
+++L G+NI +L
Sbjct: 75 GRVMLKGDNITLL 87
>gi|256085603|ref|XP_002579006.1| snrnp sm protein [Schistosoma mansoni]
gi|353230199|emb|CCD76370.1| putative snrnp sm protein [Schistosoma mansoni]
Length = 103
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + KI+V MK ++EL G L FD ++NM+L +V E T E
Sbjct: 19 PLDLIRLSLDEKIYVKMKRNRELRGVLHAFDSHLNMILGNVEETVTTLE 67
>gi|385302463|gb|EIF46594.1| small nuclear ribonucleoprotein e [Dekkera bruxellensis AWRI1499]
Length = 79
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 22 IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
IW+ + + L G LKGFD ++N+VL+D E ++ KL +LL G+NI ++
Sbjct: 20 IWLYEQVNVRLTGVLKGFDEFMNVVLDDAVEISQGXSAKQ-RKLGTVLLKGDNITLI 75
>gi|315425372|dbj|BAJ47038.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|315426552|dbj|BAJ48182.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|315426610|dbj|BAJ48238.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
gi|343485302|dbj|BAJ50956.1| small nuclear ribonucleoprotein [Candidatus Caldiarchaeum
subterraneum]
Length = 74
Score = 40.0 bits (92), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 41/69 (59%), Gaps = 3/69 (4%)
Query: 12 ELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLN 71
+++ + +GS + V ++ K L G LKG+D ++N+VLED E + KL I++
Sbjct: 8 KILSKSVGSTVLVRLRNGKVLRGLLKGYDQHMNIVLEDTDEL---IDENTQNKLGTIVVR 64
Query: 72 GNNIAILVP 80
G++I ++ P
Sbjct: 65 GDSIVMISP 73
>gi|340960769|gb|EGS21950.1| small nuclear ribonucleoprotein E-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 98
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEI---TAEGRRITKLDQILLNGNNIAI 77
+IW+ + + G ++GFD ++N+V++D E ++ T E L QILL G+NI++
Sbjct: 31 QIWLYEQLAIRITGVIRGFDEFMNLVIDDAVEIKLSPKTNEPESKRPLGQILLKGDNISL 90
Query: 78 L 78
+
Sbjct: 91 I 91
>gi|305662480|ref|YP_003858768.1| Sm ribonucleoprotein-like protein [Ignisphaera aggregans DSM
17230]
gi|304377049|gb|ADM26888.1| Like-Sm ribonucleoprotein core [Ignisphaera aggregans DSM 17230]
Length = 78
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 47/79 (59%), Gaps = 7/79 (8%)
Query: 6 SQLLPSE----LIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRR 61
SQ +P++ ++ +G + + ++G K + G L+ +D+++N+VL+D E E++ R
Sbjct: 2 SQHIPTDTAHKILAESLGQMVLIKLRGGKSVRGKLRSYDLHLNIVLDDAEE-ELSDGSWR 60
Query: 62 ITKLDQILLNGNNIAILVP 80
KL +L+ G N+ ++ P
Sbjct: 61 --KLGTVLIRGENVVVISP 77
>gi|395734016|ref|XP_003776336.1| PREDICTED: small nuclear ribonucleoprotein E-like [Pongo abelii]
Length = 92
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + + G + GFD Y+N+VL+D E + R+ +L
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIVGFDEYMNLVLDDAEEVHSKTKSRK--QL 74
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI +L
Sbjct: 75 GRIMLKGDNITLL 87
>gi|301098772|ref|XP_002898478.1| U6 snRNA-associated Sm-like protein, putative [Phytophthora
infestans T30-4]
gi|262104903|gb|EEY62955.1| U6 snRNA-associated Sm-like protein, putative [Phytophthora
infestans T30-4]
Length = 106
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 11/71 (15%)
Query: 18 IGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVT--------EYEITAEGRRITKLDQIL 69
I ++ V G +E+ GTLKG+D VN+VL+D EY IT E R K+ ++
Sbjct: 23 IDQEVRVKFHGGREVTGTLKGYDQLVNLVLDDCVEFLRDPSDEYRITDETR---KVGLVV 79
Query: 70 LNGNNIAILVP 80
G ++ ++ P
Sbjct: 80 CRGTSVMLVSP 90
>gi|296817973|ref|XP_002849323.1| LSM domain-containing protein [Arthroderma otae CBS 113480]
gi|238839776|gb|EEQ29438.1| LSM domain-containing protein [Arthroderma otae CBS 113480]
Length = 95
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 38/61 (62%), Gaps = 6/61 (9%)
Query: 22 IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEIT----AEGRRITKLDQILLNGNNIAI 77
IW+ + + G ++GFD ++N+V++D E + AE RR +L QILL G+N+++
Sbjct: 32 IWLYEQLAVRIEGKIRGFDEFMNLVVDDAVEVTLATKTEAESRR--QLGQILLKGDNVSL 89
Query: 78 L 78
+
Sbjct: 90 I 90
>gi|170111208|ref|XP_001886808.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164638166|gb|EDR02445.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 95
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 29/43 (67%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P +LI + +++V ++GD+EL G L +D ++N+++ DV E
Sbjct: 11 PFDLIRLSLSERVFVKLRGDRELTGILHAYDGHMNLIMSDVEE 53
>gi|410080239|ref|XP_003957700.1| hypothetical protein KAFR_0E04140 [Kazachstania africana CBS
2517]
gi|372464286|emb|CCF58565.1| hypothetical protein KAFR_0E04140 [Kazachstania africana CBS
2517]
Length = 85
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 5/75 (6%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE--YEITAEGR---RITK 64
P +L+ + ++V ++G + L GTL+ FD + N+VL D E YE+ G + K
Sbjct: 5 PLDLLKLNLDETVYVKLRGARALTGTLQAFDSHCNIVLSDAVETIYELDGNGELSSKEKK 64
Query: 65 LDQILLNGNNIAILV 79
+ I + G+++ ++
Sbjct: 65 SEMIFVRGDSVTLIT 79
>gi|452979544|gb|EME79306.1| hypothetical protein MYCFIDRAFT_71922 [Pseudocercospora fijiensis
CIRAD86]
Length = 84
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + ++ V + G ++++GTL+G+DV++N+VL++ TE + E +L ++ GN
Sbjct: 8 LKKYLDKRVEVQLNGSRKVMGTLRGYDVFLNIVLDEATESKPNNEK---VRLGMCVIRGN 64
Query: 74 NIAIL 78
++ ++
Sbjct: 65 SVVMM 69
>gi|409079690|gb|EKM80051.1| hypothetical protein AGABI1DRAFT_72874 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 93
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P +LI + +++V ++GD+EL G L +D ++N++L DV E
Sbjct: 12 PFDLIRLSLSERVFVKLRGDRELSGILHAYDGHMNLILSDVEE 54
>gi|365990359|ref|XP_003672009.1| hypothetical protein NDAI_0I01970 [Naumovozyma dairenensis CBS 421]
gi|343770783|emb|CCD26766.1| hypothetical protein NDAI_0I01970 [Naumovozyma dairenensis CBS 421]
Length = 110
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 45/78 (57%), Gaps = 6/78 (7%)
Query: 10 PSELIDRCIGSKIWVI--MKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK--- 64
P LI+ + SK+ VI ++ + +++ +K FD + NMVLE+V E +G++I
Sbjct: 30 PMSLINDSVISKVPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTEKKGKQIINRER 89
Query: 65 -LDQILLNGNNIAILVPG 81
+ ++ L G++I +++
Sbjct: 90 FISKLFLRGDSIIVILKA 107
>gi|441598236|ref|XP_004087442.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Nomascus leucogenys]
Length = 92
Score = 40.0 bits (92), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + ++ G + GFD Y+N+VL+D E + R+ +L
Sbjct: 17 PINLIFRYLENRSWIQVWLYEQVNMQIEGCIIGFDKYMNLVLDDAEEIHSKTKSRK--QL 74
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI +L
Sbjct: 75 GRIMLKGDNIPLL 87
>gi|212723246|ref|NP_001132868.1| uncharacterized protein LOC100194361 [Zea mays]
gi|194695618|gb|ACF81893.1| unknown [Zea mays]
Length = 107
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V ++ D+EL G L +D ++NM+L DV E T E
Sbjct: 13 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVVTTVE 61
>gi|332845410|ref|XP_003315041.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Pan troglodytes]
Length = 92
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 6/75 (8%)
Query: 8 LLPSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
+LP LI R + ++ +W+ + + + G + GFD Y+N+VL+D E + R+
Sbjct: 15 VLPINLIFRYLQNRSWIQVWLYEQVNMWIEGCIIGFDKYMNLVLDDAEEIHSKTKSRK-- 72
Query: 64 KLDQILLNGNNIAIL 78
+L +I+L G+NI +L
Sbjct: 73 QLGRIILKGDNIPLL 87
>gi|393219456|gb|EJD04943.1| U6 snRNA-associated Sm-like protein LSm7 [Fomitiporia mediterranea
MF3/22]
Length = 134
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 1/67 (1%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + +I V G +E+ G LKG+D +N+VL+DV E E R+ + L ++L G
Sbjct: 53 LQKYMNERIRVKFTGGREVTGILKGYDQLLNLVLDDVEEQLHEPEPRKRS-LGLVVLRGP 111
Query: 74 NIAILVP 80
I +L P
Sbjct: 112 TITLLNP 118
>gi|388854666|emb|CCF51823.1| related to snRNP protein [Ustilago hordei]
Length = 142
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR---RITKLDQILL 70
+ + I KI V G +E+ G LKGFD +N+V+++VTE EG + L ++L
Sbjct: 61 LTKYIDQKIRVKFAGGREVFGILKGFDQLMNLVMDEVTESLRDEEGNVTDKTRSLGLVVL 120
Query: 71 NGNNIAILVPG 81
G + ++ P
Sbjct: 121 RGTALTVINPA 131
>gi|170091648|ref|XP_001877046.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648539|gb|EDR12782.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 96
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 29/43 (67%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P +LI + +++V ++GD+EL G L +D ++N+++ DV E
Sbjct: 11 PFDLIRLSLSERVFVKLRGDRELTGILHAYDGHMNLIMSDVEE 53
>gi|324514246|gb|ADY45805.1| Small nuclear ribonucleoprotein G [Ascaris suum]
Length = 79
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
S+ P EL + + + + + G++ + G L+GFD ++N+V+ED E+ E L
Sbjct: 2 SKTHPPEL-KKYMDKHMDLKLNGNRHVSGVLRGFDPFMNIVVEDAVEHLKNGES---NTL 57
Query: 66 DQILLNGNNIAILVP 80
+++ GN+I I+ P
Sbjct: 58 GMVVIRGNSIVIMEP 72
>gi|323448125|gb|EGB04028.1| hypothetical protein AURANDRAFT_33181 [Aureococcus
anophagefferens]
Length = 103
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 11/78 (14%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR-------RIT--- 63
+++CI ++ V +G +E+ G LKGFD VN+VL++ E A R R+T
Sbjct: 9 LEKCIDKEVRVKFQGGREVRGVLKGFDQLVNIVLDNCVESMHGASARAHPDDPYRLTDKT 68
Query: 64 -KLDQILLNGNNIAILVP 80
KL ++ G ++++ P
Sbjct: 69 RKLGLVVCRGLQVSLVSP 86
>gi|148908265|gb|ABR17247.1| unknown [Picea sitchensis]
Length = 97
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V ++ D+EL G L +D ++NM+L DV E T E
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEVITTVE 60
>gi|448341319|ref|ZP_21530281.1| Like-Sm ribonucleoprotein core [Natrinema gari JCM 14663]
gi|445628366|gb|ELY81674.1| Like-Sm ribonucleoprotein core [Natrinema gari JCM 14663]
Length = 75
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEG---RRITKLD 66
P ++++ +G ++ V +K E VG L G+D ++N+VLEDV I EG D
Sbjct: 5 PLDVLEASLGDRVTVRLKSGDEYVGDLAGYDQHMNLVLEDVM---IPVEGNVEEEPPAED 61
Query: 67 QILLNGNNIAILVP 80
++ G+N+ + P
Sbjct: 62 TTIIRGDNVVSITP 75
>gi|397521006|ref|XP_003830597.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Pan paniscus]
Length = 92
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 6/75 (8%)
Query: 8 LLPSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
+LP LI R + ++ +W+ + + + G + GFD Y+N+VL+D E + R+
Sbjct: 15 VLPINLIFRYLQNRSWIQVWLYEQVNMWIEGCIIGFDKYMNLVLDDAEEIHSKTKSRK-- 72
Query: 64 KLDQILLNGNNIAIL 78
+L +I+L G+NI +L
Sbjct: 73 QLGRIILKGDNIPLL 87
>gi|383413025|gb|AFH29726.1| small nuclear ribonucleoprotein E [Macaca mulatta]
Length = 92
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + + G + GFD Y+N+VL+D E + R+ +L
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 74
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI +L
Sbjct: 75 GRIMLKGDNITLL 87
>gi|315046146|ref|XP_003172448.1| small nuclear ribonucleoprotein SmG [Arthroderma gypseum CBS
118893]
gi|327305055|ref|XP_003237219.1| small nuclear ribonucleoprotein SmG [Trichophyton rubrum CBS
118892]
gi|311342834|gb|EFR02037.1| small nuclear ribonucleoprotein SmG [Arthroderma gypseum CBS
118893]
gi|326460217|gb|EGD85670.1| small nuclear ribonucleoprotein SmG [Trichophyton rubrum CBS
118892]
gi|326472004|gb|EGD96013.1| small nuclear ribonucleoprotein SmG [Trichophyton tonsurans CBS
112818]
gi|326477131|gb|EGE01141.1| small nuclear ribonucleoprotein SmG [Trichophyton equinum CBS
127.97]
Length = 78
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + +++V + G+++++G L+G+DV++N+VL+D E G L +++ GN
Sbjct: 8 LKKYMEKRLFVQLNGNRKVIGVLRGYDVFMNIVLDDAVE---EKNGGEKVPLGMVVIRGN 64
Query: 74 NIAIL 78
++ +L
Sbjct: 65 SVVML 69
>gi|226291004|gb|EEH46432.1| small nuclear ribonucleoprotein SmG [Paracoccidioides
brasiliensis Pb18]
Length = 79
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 40/59 (67%), Gaps = 3/59 (5%)
Query: 20 SKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
+++V + G+++++G L+G+DV++N+VL++ E + E +L +++ GN++ +L
Sbjct: 14 KRLFVQINGNRKVIGILRGYDVFMNIVLDEAVEEKSGGEK---VRLGMVVIRGNSVVML 69
>gi|46107748|ref|XP_380933.1| hypothetical protein FG00757.1 [Gibberella zeae PH-1]
gi|408399451|gb|EKJ78553.1| hypothetical protein FPSE_01277 [Fusarium pseudograminearum
CS3096]
Length = 84
Score = 40.0 bits (92), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + +++V + G ++++G L+G+DV++N+VL++ E + E RI +++ GN
Sbjct: 8 LKKYLDKRLFVQLNGSRKVIGVLRGYDVFLNIVLDEAVEEKDNGEKVRIG---MVVIRGN 64
Query: 74 NIAIL 78
++ +L
Sbjct: 65 SVVML 69
>gi|148707696|gb|EDL39643.1| small nuclear ribonucleoprotein E, isoform CRA_a [Mus musculus]
Length = 105
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + + G + GFD Y+N+VL+D E + R+ +L
Sbjct: 30 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 87
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI +L
Sbjct: 88 GRIMLKGDNITLL 100
>gi|401882753|gb|EJT46997.1| u6 snRNA-associated sm-like protein lsm8 [Trichosporon asahii var.
asahii CBS 2479]
Length = 166
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 17 CIGSK--IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE-GRRITKLDQILLNGN 73
C+ SK + VI+ + +VG LKG D Y N++L D E E +A+ G + L ++ G+
Sbjct: 76 CLHSKDFVIVILYDGRIIVGRLKGNDNYCNLILSDSVEREYSADKGVEMISLGLYMIKGD 135
Query: 74 NIAILV 79
N+A++
Sbjct: 136 NVALIA 141
>gi|198477433|ref|XP_002136614.1| GA29224 [Drosophila pseudoobscura pseudoobscura]
gi|198142906|gb|EDY71618.1| GA29224 [Drosophila pseudoobscura pseudoobscura]
Length = 167
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + K++V M+ ++EL G L FD ++NMVL D E T E
Sbjct: 82 PLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNMVLGDAEETVTTVE 130
>gi|440911215|gb|ELR60916.1| Small nuclear ribonucleoprotein E, partial [Bos grunniens mutus]
Length = 91
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + ++ G + GFD Y+N++L+D E + R+ +L
Sbjct: 16 PINLIFRYLQNRSRIQVWLYEQVNMQIEGCIIGFDEYMNLILDDAEEIHSKTKSRK--QL 73
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI +L
Sbjct: 74 GRIMLKGDNITLL 86
>gi|300176178|emb|CBK23489.2| unnamed protein product [Blastocystis hominis]
Length = 95
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 19 GSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
G +IW+ + + G + GFD Y+N+VL++ +E I + R+ L +ILL G+N+ ++
Sbjct: 34 GVQIWLYDQPHVRIEGVINGFDEYMNIVLDNASEVNIKMKTRK--NLGKILLKGDNVTLI 91
>gi|91087977|ref|XP_973274.1| PREDICTED: similar to LSM Sm-like protein family member
[Tribolium castaneum]
gi|270011905|gb|EFA08353.1| hypothetical protein TcasGA2_TC005996 [Tribolium castaneum]
Length = 101
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +L+ + +I+V M+ D+E+ G L +D ++NM+L D E T E
Sbjct: 16 PLDLVRLSLDERIYVKMRNDREIRGRLHAYDQHMNMILSDAEETITTVE 64
>gi|145230750|ref|XP_001389639.1| U6 snRNA-associated Sm-like protein LSm7 [Aspergillus niger CBS
513.88]
gi|134055758|emb|CAK44131.1| unnamed protein product [Aspergillus niger]
gi|350638639|gb|EHA26995.1| hypothetical protein ASPNIDRAFT_205537 [Aspergillus niger ATCC
1015]
Length = 136
Score = 40.0 bits (92), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK-LDQILLNG 72
+++ + ++ V G +E++GTLKG+D +N+VL+DV E EG T+ L ++ G
Sbjct: 53 LNKYMDKEVRVKFNGGREVIGTLKGYDQLMNLVLDDVKESMRDDEGNENTRSLGLVVARG 112
Query: 73 NNIAILVPG 81
I ++ P
Sbjct: 113 TIIVLISPA 121
>gi|354459631|pdb|3SWN|C Chain C, Structure Of The Lsm657 Complex: An Assembly Intermediate
Of The Lsm1 7 And Lsm2 8 Rings
gi|354459634|pdb|3SWN|F Chain F, Structure Of The Lsm657 Complex: An Assembly Intermediate
Of The Lsm1 7 And Lsm2 8 Rings
gi|354459637|pdb|3SWN|O Chain O, Structure Of The Lsm657 Complex: An Assembly Intermediate
Of The Lsm1 7 And Lsm2 8 Rings
gi|354459640|pdb|3SWN|R Chain R, Structure Of The Lsm657 Complex: An Assembly Intermediate
Of The Lsm1 7 And Lsm2 8 Rings
Length = 117
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT----KLDQIL 69
+ R +I G +++ G LKGFD +N+VL+DV E E ++T KL ++
Sbjct: 32 LSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVV 91
Query: 70 LNGNNIAILVP 80
+ G + ++ P
Sbjct: 92 VRGTTLVLIAP 102
>gi|147903209|ref|NP_001090934.1| small nuclear ribonucleoprotein E [Sus scrofa]
gi|166233313|sp|A1XQR9.1|RUXE_PIG RecName: Full=Small nuclear ribonucleoprotein E; Short=snRNP-E;
AltName: Full=Sm protein E; Short=Sm-E; Short=SmE
gi|117660533|gb|ABK55625.1| SNRPE [Sus scrofa]
gi|117660560|gb|ABK55626.1| NDUFB2 [Sus scrofa]
Length = 92
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + + G + GFD Y+N+VL+D E + R+ +L
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 74
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI +L
Sbjct: 75 GRIMLKGDNITLL 87
>gi|71406106|ref|XP_805619.1| small nuclear ribonucleoprotein SmD2 [Trypanosoma cruzi strain CL
Brener]
gi|70869094|gb|EAN83768.1| small nuclear ribonucleoprotein SmD2, putative [Trypanosoma cruzi]
Length = 111
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 40/72 (55%), Gaps = 2/72 (2%)
Query: 10 PSELIDRCI--GSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQ 67
P ++D + G+++++ + +K LV T+ FD + N+VL DV E + + ++ +
Sbjct: 33 PFSVLDSAMRNGTRVFIQSRFNKSLVATVVAFDKHFNLVLRDVVELAMVNKEQKERSIRN 92
Query: 68 ILLNGNNIAILV 79
+ L G ++ +V
Sbjct: 93 MFLRGGSVVFIV 104
>gi|384252623|gb|EIE26099.1| Sm-like ribonucleo protein [Coccomyxa subellipsoidea C-169]
Length = 95
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 29/43 (67%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P +LI + +I+V ++GD+EL G L +D ++NM+L +V E
Sbjct: 11 PLDLIRLSLDERIYVKLRGDRELRGRLHAYDQHLNMILGEVEE 53
>gi|290462981|gb|ADD24538.1| U6 snRNA-associated Sm-like protein LSm3 [Lepeophtheirus
salmonis]
Length = 105
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 48/99 (48%), Gaps = 19/99 (19%)
Query: 1 MAHNPSQL---------LPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVL---- 47
MA +P Q P +LI + +I+V M+ ++EL G L +D Y+NM+L
Sbjct: 1 MAEDPDQANAGAALTVEEPLDLIRLSLDERIYVKMRNERELKGRLNAYDQYLNMILGEVE 60
Query: 48 EDVTEYEITAEG----RRITKLD--QILLNGNNIAILVP 80
E VT EI E R TK + + + G+ + ++ P
Sbjct: 61 ETVTSIEIDEETYEEVYRTTKRNIPMLFVRGDGVILVSP 99
>gi|41055945|ref|NP_957298.1| small nuclear ribonucleoprotein E [Danio rerio]
gi|54039591|sp|Q7ZUG0.1|RUXE_DANRE RecName: Full=Small nuclear ribonucleoprotein E; Short=snRNP-E;
AltName: Full=Sm protein E; Short=Sm-E; Short=SmE
gi|29124607|gb|AAH49062.1| Small nuclear ribonucleoprotein polypeptide E [Danio rerio]
Length = 92
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + + G + GFD Y+N+VL+D E + + R+ L
Sbjct: 17 PINLIFRYLQNRSRISVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKTKNRK--PL 74
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI +L
Sbjct: 75 GRIMLKGDNITLL 87
>gi|340520043|gb|EGR50280.1| predicted protein [Trichoderma reesei QM6a]
gi|358387525|gb|EHK25119.1| hypothetical protein TRIVIDRAFT_32934 [Trichoderma virens Gv29-8]
Length = 83
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + +++V + G ++++G L+G+DV++N+VL++ E +G +L +++ GN
Sbjct: 8 LKKYLDKRLFVQLNGSRKVIGVLRGYDVFLNIVLDEAVE---EKDGGEKIRLGMVVIRGN 64
Query: 74 NIAIL 78
++ +L
Sbjct: 65 SVVML 69
>gi|109484106|ref|XP_001064438.1| PREDICTED: small nuclear ribonucleoprotein E-like [Rattus
norvegicus]
gi|293349553|ref|XP_002727191.1| PREDICTED: small nuclear ribonucleoprotein E-like [Rattus
norvegicus]
Length = 92
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + + G + GFD Y+N+VL+D E + R+ +L
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 74
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI +L
Sbjct: 75 GRIMLKGDNITLL 87
>gi|348510586|ref|XP_003442826.1| PREDICTED: small nuclear ribonucleoprotein E-like [Oreochromis
niloticus]
Length = 92
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + + G + GFD Y+N+VL+D E + + R+ L
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKTKNRK--PL 74
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI +L
Sbjct: 75 GRIMLKGDNITLL 87
>gi|407461730|ref|YP_006773047.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus
koreensis AR1]
gi|407045352|gb|AFS80105.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus
koreensis AR1]
Length = 78
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 12 ELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLN 71
+++D I + + +KG+K + G L GFD ++N++L+ + EI AEG L I++
Sbjct: 8 KVLDESINQVVLIKLKGNKTIRGNLLGFDQHMNLLLD--SSEEIPAEGDS-KGLGTIVVR 64
Query: 72 GNNIAILVP 80
G+N+ ++ P
Sbjct: 65 GDNVVMISP 73
>gi|145356609|ref|XP_001422520.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582763|gb|ABP00837.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 87
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + +K IW+ D + G + GFD Y+N+VL+D E+T + R +
Sbjct: 12 PINLIFRFLQTKARVQIWMYENPDTCVEGRIVGFDEYMNLVLDDAE--EVTEKKSRRVGV 69
Query: 66 DQILLNGNNIAIL 78
+ILL G+NI ++
Sbjct: 70 GRILLKGDNITLM 82
>gi|169602875|ref|XP_001794859.1| hypothetical protein SNOG_04441 [Phaeosphaeria nodorum SN15]
gi|160706278|gb|EAT88201.2| hypothetical protein SNOG_04441 [Phaeosphaeria nodorum SN15]
Length = 84
Score = 40.0 bits (92), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + ++ V + G ++++G L+G+DVY+N+VL++ E + E T++ +++ GN
Sbjct: 8 LKKYLEKRVLVQLNGSRKVMGILRGYDVYLNIVLDEALEEKAGGEK---TRIGMVVIRGN 64
Query: 74 NIAIL 78
+ +L
Sbjct: 65 AVVML 69
>gi|353234457|emb|CCA66482.1| related to snRNP protein [Piriformospora indica DSM 11827]
Length = 158
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 1/67 (1%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + +GSK+ V G +++ G LKGFD +N+VL+ V E +++ + +L ++ G
Sbjct: 79 LSKYVGSKVRVTFTGGRQVTGILKGFDQLLNLVLDQVEE-QVSELQQNPRQLGLAVVRGP 137
Query: 74 NIAILVP 80
+ ++ P
Sbjct: 138 TVTLIAP 144
>gi|317418569|emb|CBN80607.1| Small nuclear ribonucleoprotein E [Dicentrarchus labrax]
Length = 92
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + + G + GFD Y+N+VL+D E + + R+ L
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKTKNRK--PL 74
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI +L
Sbjct: 75 GRIMLKGDNITLL 87
>gi|4507129|ref|NP_003085.1| small nuclear ribonucleoprotein E [Homo sapiens]
gi|27883844|ref|NP_033253.1| small nuclear ribonucleoprotein E [Mus musculus]
gi|45382605|ref|NP_990581.1| small nuclear ribonucleoprotein E [Gallus gallus]
gi|134085710|ref|NP_001076928.1| small nuclear ribonucleoprotein E [Bos taurus]
gi|388490108|ref|NP_001253704.1| small nuclear ribonucleoprotein E [Macaca mulatta]
gi|403420626|ref|NP_001258166.1| small nuclear ribonucleoprotein polypeptide E [Rattus norvegicus]
gi|114572016|ref|XP_001158544.1| PREDICTED: small nuclear ribonucleoprotein E isoform 3 [Pan
troglodytes]
gi|126306697|ref|XP_001364976.1| PREDICTED: small nuclear ribonucleoprotein E-like [Monodelphis
domestica]
gi|291402573|ref|XP_002717622.1| PREDICTED: small nuclear ribonucleoprotein polypeptide E
[Oryctolagus cuniculus]
gi|297662243|ref|XP_002809621.1| PREDICTED: small nuclear ribonucleoprotein E [Pongo abelii]
gi|327271183|ref|XP_003220367.1| PREDICTED: small nuclear ribonucleoprotein E-like [Anolis
carolinensis]
gi|344277002|ref|XP_003410294.1| PREDICTED: small nuclear ribonucleoprotein E-like [Loxodonta
africana]
gi|348578175|ref|XP_003474859.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cavia
porcellus]
gi|354487267|ref|XP_003505795.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cricetulus
griseus]
gi|359324001|ref|XP_003640259.1| PREDICTED: small nuclear ribonucleoprotein E-like [Canis lupus
familiaris]
gi|397479845|ref|XP_003811214.1| PREDICTED: small nuclear ribonucleoprotein E-like [Pan paniscus]
gi|397504925|ref|XP_003823029.1| PREDICTED: small nuclear ribonucleoprotein E [Pan paniscus]
gi|402857535|ref|XP_003893308.1| PREDICTED: small nuclear ribonucleoprotein E [Papio anubis]
gi|402858753|ref|XP_003893852.1| PREDICTED: small nuclear ribonucleoprotein E-like [Papio anubis]
gi|403261763|ref|XP_003923280.1| PREDICTED: small nuclear ribonucleoprotein E-like [Saimiri
boliviensis boliviensis]
gi|403294819|ref|XP_003938362.1| PREDICTED: small nuclear ribonucleoprotein E [Saimiri boliviensis
boliviensis]
gi|410986283|ref|XP_003999440.1| PREDICTED: small nuclear ribonucleoprotein E [Felis catus]
gi|426239377|ref|XP_004013598.1| PREDICTED: small nuclear ribonucleoprotein E [Ovis aries]
gi|426333365|ref|XP_004028248.1| PREDICTED: small nuclear ribonucleoprotein E-like [Gorilla
gorilla gorilla]
gi|55977309|sp|P62305.1|RUXE_MOUSE RecName: Full=Small nuclear ribonucleoprotein E; Short=snRNP-E;
AltName: Full=Sm protein E; Short=Sm-E; Short=SmE
gi|61237380|sp|P62304.1|RUXE_HUMAN RecName: Full=Small nuclear ribonucleoprotein E; Short=snRNP-E;
AltName: Full=Sm protein E; Short=Sm-E; Short=SmE
gi|78102504|sp|P62303.1|RUXE_CHICK RecName: Full=Small nuclear ribonucleoprotein E; Short=snRNP-E;
AltName: Full=Sm protein E; Short=Sm-E; Short=SmE
gi|190360254|sp|A4FUI2.1|RUXE_BOVIN RecName: Full=Small nuclear ribonucleoprotein E; Short=snRNP-E;
AltName: Full=Sm protein E; Short=Sm-E; Short=SmE
gi|225734045|pdb|3CW1|E Chain E, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734054|pdb|3CW1|W Chain W, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734063|pdb|3CW1|X Chain X, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|225734072|pdb|3CW1|Y Chain Y, Crystal Structure Of Human Spliceosomal U1 Snrnp
gi|315583605|pdb|3PGW|E Chain E, Crystal Structure Of Human U1 Snrnp
gi|315583614|pdb|3PGW|H Chain H, Crystal Structure Of Human U1 Snrnp
gi|332639437|pdb|2Y9A|E Chain E, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639444|pdb|2Y9A|L Chain L, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639451|pdb|2Y9A|S Chain S, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639461|pdb|2Y9B|E Chain E, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639468|pdb|2Y9B|L Chain L, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639475|pdb|2Y9B|S Chain S, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639485|pdb|2Y9C|E Chain E, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639492|pdb|2Y9C|L Chain L, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639499|pdb|2Y9C|S Chain S, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639509|pdb|2Y9D|E Chain E, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639516|pdb|2Y9D|L Chain L, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|332639523|pdb|2Y9D|S Chain S, Structure Of The Spliceosomal U4 Snrnp Core Domain
gi|343781212|pdb|3S6N|E Chain E, Crystal Structure Of The Gemin2-Binding Domain Of Smn,
Gemin2 In Complex With Smd1D2FEG FROM HUMAN
gi|444302200|pdb|4F7U|E Chain E, Macromolecular Machine 6
gi|444302201|pdb|4F7U|H Chain H, Macromolecular Machine 6
gi|453055424|pdb|1VU2|C Chain C, The 8s Snrnp Assembly Intermediate
gi|453055432|pdb|1VU2|K Chain K, The 8s Snrnp Assembly Intermediate
gi|453055440|pdb|1VU2|S Chain S, The 8s Snrnp Assembly Intermediate
gi|453055448|pdb|1VU2|AA Chain a, The 8s Snrnp Assembly Intermediate
gi|453055456|pdb|1VU2|II Chain i, The 8s Snrnp Assembly Intermediate
gi|453055464|pdb|1VU2|QQ Chain q, The 8s Snrnp Assembly Intermediate
gi|453055476|pdb|1VU2|YY Chain y, The 8s Snrnp Assembly Intermediate
gi|453055480|pdb|1VU3|C Chain C, The 8s Snrnp Assembly Intermediate
gi|453055488|pdb|1VU3|K Chain K, The 8s Snrnp Assembly Intermediate
gi|453055496|pdb|1VU3|S Chain S, The 8s Snrnp Assembly Intermediate
gi|453055504|pdb|1VU3|AA Chain a, The 8s Snrnp Assembly Intermediate
gi|453055512|pdb|1VU3|II Chain i, The 8s Snrnp Assembly Intermediate
gi|453055520|pdb|1VU3|QQ Chain q, The 8s Snrnp Assembly Intermediate
gi|453056012|pdb|4F77|K Chain K, The 8s Snrnp Assembly Intermediate
gi|453056020|pdb|4F77|C Chain C, The 8s Snrnp Assembly Intermediate
gi|453056028|pdb|4F77|S Chain S, The 8s Snrnp Assembly Intermediate
gi|453056036|pdb|4F77|AA Chain a, The 8s Snrnp Assembly Intermediate
gi|453056044|pdb|4F77|II Chain i, The 8s Snrnp Assembly Intermediate
gi|453056052|pdb|4F77|QQ Chain q, The 8s Snrnp Assembly Intermediate
gi|453056064|pdb|4F77|YY Chain y, The 8s Snrnp Assembly Intermediate
gi|35105|emb|CAA31007.1| unnamed protein product [Homo sapiens]
gi|304425|gb|AAA49073.1| small nuclear ribonucleoprotein E [Gallus gallus]
gi|312002|emb|CAA46624.1| SmE protein [Gallus gallus]
gi|338267|gb|AAA90926.1| small nuclear RNA protein (snRNP E) [Homo sapiens]
gi|12803609|gb|AAH02639.1| Small nuclear ribonucleoprotein polypeptide E [Homo sapiens]
gi|12859681|dbj|BAB31734.1| unnamed protein product [Mus musculus]
gi|14198403|gb|AAH08262.1| Small nuclear ribonucleoprotein E [Mus musculus]
gi|33585911|gb|AAH55765.1| Small nuclear ribonucleoprotein E [Mus musculus]
gi|56078667|gb|AAH51207.1| Small nuclear ribonucleoprotein E [Mus musculus]
gi|60688403|gb|AAH90951.1| Small nuclear ribonucleoprotein polypeptide E [Homo sapiens]
gi|119611900|gb|EAW91494.1| small nuclear ribonucleoprotein polypeptide E, isoform CRA_a
[Homo sapiens]
gi|133777545|gb|AAI14916.1| SNRPE protein [Bos taurus]
gi|149058608|gb|EDM09765.1| rCG46024, isoform CRA_a [Rattus norvegicus]
gi|189053260|dbj|BAG35066.1| unnamed protein product [Homo sapiens]
gi|208967438|dbj|BAG73733.1| small nuclear ribonucleoprotein polypeptide E [synthetic
construct]
gi|296479386|tpg|DAA21501.1| TPA: small nuclear ribonucleoprotein E [Bos taurus]
gi|344246138|gb|EGW02242.1| Small nuclear ribonucleoprotein E [Cricetulus griseus]
gi|355558873|gb|EHH15653.1| hypothetical protein EGK_01772 [Macaca mulatta]
gi|355746009|gb|EHH50634.1| hypothetical protein EGM_01497 [Macaca fascicularis]
gi|387542988|gb|AFJ72121.1| small nuclear ribonucleoprotein E [Macaca mulatta]
gi|410355685|gb|JAA44446.1| small nuclear ribonucleoprotein polypeptide E [Pan troglodytes]
gi|417395589|gb|JAA44847.1| Putative small nuclear ribonucleoprotein e [Desmodus rotundus]
Length = 92
Score = 39.7 bits (91), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + + G + GFD Y+N+VL+D E + R+ +L
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 74
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI +L
Sbjct: 75 GRIMLKGDNITLL 87
>gi|449017972|dbj|BAM81374.1| similar to Sm protein D2 [Cyanidioschyzon merolae strain 10D]
Length = 332
Score = 39.7 bits (91), Expect = 0.21, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 2 AHNPSQLLPSELIDRCIGSKI--WVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
A N S P L+DRCI ++ V + +K+L GTL+ +D + N+++E V E
Sbjct: 234 AANGSPRTPFTLLDRCITDRVPCLVSCRHNKKLYGTLRAYDKHFNLIMEHVRE 286
>gi|19075840|ref|NP_588340.1| U6 snRNP-associated protein Lsm7 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|74626865|sp|O74499.1|LSM7_SCHPO RecName: Full=U6 snRNA-associated Sm-like protein LSm7
gi|3581912|emb|CAA20851.1| U6 snRNP-associated protein Lsm7 (predicted) [Schizosaccharomyces
pombe]
Length = 113
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT----KLDQIL 69
+ R +I G +++ G LKGFD +N+VL+DV E E ++T KL ++
Sbjct: 28 LSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVV 87
Query: 70 LNGNNIAILVP 80
+ G + ++ P
Sbjct: 88 VRGTTLVLIAP 98
>gi|378727606|gb|EHY54065.1| small nuclear ribonucleoprotein E [Exophiala dermatitidis
NIH/UT8656]
Length = 94
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Query: 5 PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITA----EGR 60
P + S L R S IW+ + G ++GFD ++N+V++D E ++ E R
Sbjct: 16 PIHFIFSLLQKRSTVS-IWLYENLRTRIEGKIRGFDEFMNLVIDDAVEVQLATRDSPEKR 74
Query: 61 RITKLDQILLNGNNIAIL 78
R +L QILL G+N++++
Sbjct: 75 R--QLGQILLKGDNVSLI 90
>gi|363748022|ref|XP_003644229.1| hypothetical protein Ecym_1162 [Eremothecium cymbalariae
DBVPG#7215]
gi|356887861|gb|AET37412.1| hypothetical protein Ecym_1162 [Eremothecium cymbalariae
DBVPG#7215]
Length = 83
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE--YEITAEGRRI-TKLD 66
P +L+ + K++V ++G ++L GTL+ FD + N+VL D E YE+ R TK
Sbjct: 5 PLDLLRLNLDEKVYVKLRGARKLTGTLQAFDSHCNIVLSDAEETIYELVDGNLRFETKTS 64
Query: 67 Q-ILLNGNNIAILVP 80
+ I + G+++ ++
Sbjct: 65 EMIFVRGDSVTLVTA 79
>gi|212223792|ref|YP_002307028.1| small nuclear ribonucleoprotein [Thermococcus onnurineus NA1]
gi|229559994|sp|B6YUU5.1|RUXX_THEON RecName: Full=Putative snRNP Sm-like protein
gi|212008749|gb|ACJ16131.1| Hypothetical small nuclear ribonucleoprotein [Thermococcus
onnurineus NA1]
Length = 78
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++I R + + VI+K E G L G+D+++N+VL E+ +G + K +I+
Sbjct: 5 PLDVIHRSLDKDVLVILKKGFEFRGKLIGYDIHLNIVLAGA---EMIQDGEVVKKYGKIV 61
Query: 70 LNGNNIAILVP 80
+ G+N+ + P
Sbjct: 62 IRGDNVLAISP 72
>gi|213514566|ref|NP_001134166.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|209731160|gb|ACI66449.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|209731914|gb|ACI66826.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|221222246|gb|ACM09784.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|223646154|gb|ACN09835.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|223646558|gb|ACN10037.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|223647280|gb|ACN10398.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|223672001|gb|ACN12182.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|223672405|gb|ACN12384.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|223673159|gb|ACN12761.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|225715976|gb|ACO13834.1| Small nuclear ribonucleoprotein E [Esox lucius]
gi|303663497|gb|ADM16108.1| Small nuclear ribonucleoprotein E [Salmo salar]
gi|303666767|gb|ADM16243.1| Small nuclear ribonucleoprotein E [Salmo salar]
Length = 92
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + + G + GFD Y+N+VL+D E + + R+ L
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKTKNRK--PL 74
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI +L
Sbjct: 75 GRIMLKGDNITLL 87
>gi|196003100|ref|XP_002111417.1| hypothetical protein TRIADDRAFT_23866 [Trichoplax adhaerens]
gi|190585316|gb|EDV25384.1| hypothetical protein TRIADDRAFT_23866 [Trichoplax adhaerens]
Length = 104
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +L+ + +I V M+ D+EL G L +D ++NMVL DV E T E
Sbjct: 17 PLDLVRLSLDERILVKMRNDRELRGRLHAYDQHLNMVLGDVEETITTVE 65
>gi|339522121|gb|AEJ84225.1| small nuclear ribonucleoprotein E [Capra hircus]
Length = 79
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + + G + GFD Y+N+VL+D E + R+ +L
Sbjct: 4 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 61
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI +L
Sbjct: 62 GRIMLKGDNITLL 74
>gi|350536415|ref|NP_001233054.1| uncharacterized protein LOC100167860 [Acyrthosiphon pisum]
gi|239792347|dbj|BAH72527.1| ACYPI008615 [Acyrthosiphon pisum]
Length = 106
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+EL G L FD ++NMVL + E T E
Sbjct: 21 PVDLIRLSVDERIYVKMRHDRELRGRLHAFDQHLNMVLGEAEETITTIE 69
>gi|71027525|ref|XP_763406.1| small nuclear ribonucleoprotein [Theileria parva strain Muguga]
gi|85000711|ref|XP_955074.1| small nuclear ribonucleoprotein (E) [Theileria annulata strain
Ankara]
gi|65303220|emb|CAI75598.1| small nuclear ribonucleoprotein (E), putative [Theileria
annulata]
gi|68350359|gb|EAN31123.1| small nuclear ribonucleoprotein, putative [Theileria parva]
Length = 91
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVP 80
+IW+ + + ++ GT++GFD Y+NMVL++ TE + ++ + +ILL G+ + ++
Sbjct: 30 QIWLFDQPNTKIEGTIRGFDEYMNMVLDNATEVHVKKNVKK--DVGRILLKGDCMTLISA 87
Query: 81 GGSP 84
S
Sbjct: 88 ATSK 91
>gi|428181541|gb|EKX50404.1| hypothetical protein GUITHDRAFT_103637 [Guillardia theta
CCMP2712]
Length = 98
Score = 39.7 bits (91), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 11/75 (14%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE--------YEITAEGRRITKL 65
+ R + K+ V G +E+ G LKGFD VN+VL++ E Y++T E R +L
Sbjct: 12 LSRHVDQKVRVKFSGGREVEGRLKGFDTLVNLVLDECIEYIRDPDDPYKLTNETR---QL 68
Query: 66 DQILLNGNNIAILVP 80
I+ G + ++ P
Sbjct: 69 GLIVCRGTAVTLVCP 83
>gi|312005|emb|CAA46626.1| small nuclear ribonucleoprotein E [Mus musculus]
gi|338269|gb|AAA36621.1| small nuclear ribonucleoprotein E, partial [Homo sapiens]
Length = 81
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + + G + GFD Y+N+VL+D E + R+ +L
Sbjct: 6 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 63
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI +L
Sbjct: 64 GRIMLKGDNITLL 76
>gi|301783571|ref|XP_002927201.1| PREDICTED: small nuclear ribonucleoprotein E-like [Ailuropoda
melanoleuca]
Length = 98
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + + G + GFD Y+N+VL+D E + R+ +L
Sbjct: 23 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 80
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI +L
Sbjct: 81 GRIMLKGDNITLL 93
>gi|328768113|gb|EGF78160.1| hypothetical protein BATDEDRAFT_90820 [Batrachochytrium
dendrobatidis JAM81]
Length = 91
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + K IW+ + + + G + GFD ++N+VL+D E R+ +L
Sbjct: 12 PINLIFRMLQQKSRVQIWLYEQTEIRIEGQILGFDEFMNLVLDDAEEVSTKTGARK--QL 69
Query: 66 DQILLNGNNIAIL 78
+ILL G+NI +
Sbjct: 70 GRILLKGDNITLF 82
>gi|66362586|ref|XP_628259.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
gi|46229856|gb|EAK90674.1| small nuclear ribonucleoprotein [Cryptosporidium parvum Iowa II]
Length = 95
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 40/75 (53%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQ 67
L P +LI + +++V +G++EL GTL +D ++NMVL +V E E + T+ +
Sbjct: 5 LEPLDLIRLSLDEQVFVKCRGNRELKGTLYAYDPHMNMVLGNVEETYYEEESKSDTQNSE 64
Query: 68 ILLNGNNIAILVPGG 82
L I +L G
Sbjct: 65 KKLKKRRIEMLFLRG 79
>gi|344299952|gb|EGW30292.1| hypothetical protein SPAPADRAFT_63138 [Spathaspora passalidarum
NRRL Y-27907]
Length = 87
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 22 IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
IW+ + + G ++GFD ++N+V++D E T GR+ +L +ILL G+NI ++
Sbjct: 28 IWLYEQTQSRIQGKIRGFDEFMNIVIDDAVEIS-TVTGRK-DELGRILLKGDNITLI 82
>gi|156841174|ref|XP_001643962.1| hypothetical protein Kpol_1001p16 [Vanderwaltozyma polyspora DSM
70294]
gi|156114593|gb|EDO16104.1| hypothetical protein Kpol_1001p16 [Vanderwaltozyma polyspora DSM
70294]
Length = 85
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE--YEI 55
P +L+ + K++V ++G +ELVG L+ FD + N+VL D E YE+
Sbjct: 6 PLDLLKLNLDEKVYVKLRGARELVGILQAFDSHCNIVLSDAVETIYEL 53
>gi|410730333|ref|XP_003671346.2| hypothetical protein NDAI_0G03260 [Naumovozyma dairenensis CBS
421]
gi|401780164|emb|CCD26103.2| hypothetical protein NDAI_0G03260 [Naumovozyma dairenensis CBS
421]
Length = 76
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + KI + + G +++ G L+G+D+++N+V++D E++A+G + Q ++ GN
Sbjct: 7 LKKYMDKKILIQLNGSRKIAGILRGYDIFLNVVIDDAV--EVSADGSKHQLGIQTVIRGN 64
Query: 74 NIAIL 78
+I L
Sbjct: 65 SIVAL 69
>gi|262089301|gb|ACY24522.1| putative LSM domain protein [uncultured crenarchaeote 57a5]
Length = 104
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 9 LPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
+ ++L+ IG + V +KG + + G +KGFD +N+V+ D TE
Sbjct: 24 IATQLLQESIGKNVLVKLKGRRSVRGKIKGFDKQMNIVITDATE 67
>gi|225679289|gb|EEH17573.1| conserved hypothetical protein [Paracoccidioides brasiliensis
Pb03]
Length = 78
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + +++V + G+++++G L+G+DV++N+VL++ E + E +L +++ GN
Sbjct: 8 LKKYMEKRLFVQINGNRKVIGILRGYDVFMNIVLDEAVEEKSGGEK---VRLGMVVIRGN 64
Query: 74 NIAIL 78
++ +L
Sbjct: 65 SVVML 69
>gi|406866709|gb|EKD19748.1| LSM domain-containing protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 95
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 39/62 (62%), Gaps = 6/62 (9%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY----EITAEGRRITKLDQILLNGNNIA 76
+IW+ + + G ++GFD ++N+V++D E + +AE RR L QILL G+N++
Sbjct: 31 QIWLYEQLAIRIEGKIRGFDEFMNLVIDDAVEVKQATKTSAESRR--DLGQILLKGDNVS 88
Query: 77 IL 78
++
Sbjct: 89 LI 90
>gi|332376438|gb|AEE63359.1| unknown [Dendroctonus ponderosae]
Length = 97
Score = 39.7 bits (91), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 14/98 (14%)
Query: 1 MAHNPSQLL-----PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVT 51
MA+ P ++ P LI R + ++ +W+ + G + GFD Y+N+VL+D
Sbjct: 1 MAYKPQKVQKVMVQPINLIFRYLQNRSRVQVWLYENVRLRIEGHIVGFDEYMNLVLDDAE 60
Query: 52 EYEITAEGRRITKLDQILLNGNNIAILV---PGGSPDP 86
E + RR L +I+L G+NI ++ P DP
Sbjct: 61 ELYVKTMHRR--PLGRIMLKGDNITVIQMVKPDSVEDP 96
>gi|387018116|gb|AFJ51176.1| Small nuclear ribonucleoprotein E [Crotalus adamanteus]
Length = 92
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + + G + GFD Y+N+VL+D E + R+ +L
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 74
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI +L
Sbjct: 75 GRIMLKGDNITLL 87
>gi|145353525|ref|XP_001421061.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581297|gb|ABO99354.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 72
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 38/55 (69%), Gaps = 4/55 (7%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNI 75
K+ + + G++ +VGTL+GFD ++N+VL+D T + T+E T + I++ GN++
Sbjct: 4 KLRLRLNGNRNVVGTLRGFDQFLNVVLDDATN-DTTSEK---TPMGMIVVRGNSV 54
>gi|296230202|ref|XP_002760604.1| PREDICTED: small nuclear ribonucleoprotein E-like [Callithrix
jacchus]
Length = 92
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + + G + GFD Y+N+VL+D E + R+ +L
Sbjct: 17 PINLIFRYLQNRSWIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 74
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI +L
Sbjct: 75 GRIMLKGDNITLL 87
>gi|281354337|gb|EFB29921.1| hypothetical protein PANDA_016960 [Ailuropoda melanoleuca]
Length = 92
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + + G + GFD Y+N+VL+D E + R+ +L
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 74
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI +L
Sbjct: 75 GRIMLKGDNITLL 87
>gi|198417167|ref|XP_002127833.1| PREDICTED: similar to small nuclear ribonucleoprotein E [Ciona
intestinalis]
Length = 96
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ IWV + + + G + GFD Y+N+VL+D E I R+ L
Sbjct: 15 PINLIFRYLQNRSRVSIWVYEQVNMRIEGHIVGFDEYMNLVLDDAEEVNIKKNVRKT--L 72
Query: 66 DQILLNGNNIAIL 78
+++L G+NI ++
Sbjct: 73 GRVMLKGDNITVI 85
>gi|295665420|ref|XP_002793261.1| small nuclear ribonucleoprotein SmG [Paracoccidioides sp.
'lutzii' Pb01]
gi|226278175|gb|EEH33741.1| small nuclear ribonucleoprotein SmG [Paracoccidioides sp.
'lutzii' Pb01]
Length = 78
Score = 39.7 bits (91), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + +++V + G+++++G L+G+DV++N+VL++ E + E +L +++ GN
Sbjct: 8 LKKYMEKRLFVQINGNRKVIGILRGYDVFMNIVLDEAVEEKSGGEK---VRLGMVVIRGN 64
Query: 74 NIAIL 78
++ +L
Sbjct: 65 SVVML 69
>gi|353234582|emb|CCA66606.1| probable LSM3-U6 snRNA-associated Sm-like protein [Piriformospora
indica DSM 11827]
Length = 94
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 28/43 (65%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P +LI + ++ V ++GD++L G L +D ++NM+L DV E
Sbjct: 10 PFDLIRLSLSERVMVKLRGDRQLSGVLHAYDGHMNMILSDVEE 52
>gi|348563323|ref|XP_003467457.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cavia
porcellus]
Length = 92
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
++W+ + + + G + GFD Y+N+VL+D E EI ++ + +L +I+L G+NI +L
Sbjct: 32 QVWLYEQVNMRIEGCIVGFDEYMNLVLDD--EEEIHSKTKSRKQLGRIMLKGDNITLL 87
>gi|339240555|ref|XP_003376203.1| putative LSM domain protein [Trichinella spiralis]
gi|316975093|gb|EFV58552.1| putative LSM domain protein [Trichinella spiralis]
Length = 109
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 3 HNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
H+ + P +L+ + +I+V ++ ++EL G L +D ++NMVL DV E E E
Sbjct: 11 HSTTVEEPMDLVRLSLDERIFVKLRSNRELRGRLHAYDQHLNMVLGDVEEIETIVE 66
>gi|355571637|ref|ZP_09042865.1| Like-Sm ribonucleoprotein core [Methanolinea tarda NOBI-1]
gi|354825270|gb|EHF09500.1| Like-Sm ribonucleoprotein core [Methanolinea tarda NOBI-1]
Length = 75
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 10 PSELIDRCIGSK-IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQI 68
P +++D+ + + + V +KG +EL G L+G+DV++N+VL+ E EG + + +
Sbjct: 5 PLDILDQVLNRQPVIVSLKGGRELRGVLQGYDVHMNLVLDKAEE----IEGGQSRSVGTL 60
Query: 69 LLNGNNIAILVP 80
++ G+N+ + P
Sbjct: 61 IVRGDNVIYISP 72
>gi|380491285|emb|CCF35428.1| LSM domain-containing protein [Colletotrichum higginsianum]
Length = 144
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK-LDQILLNG 72
+ + + +I V G +E+ GTLKG+D +N+VL++V E EG T+ L ++ G
Sbjct: 60 LSKYMDKQITVKFNGGREVTGTLKGYDALMNLVLDEVQEVMRDEEGNETTRSLGLVVARG 119
Query: 73 NNIAILVPGGSPDP 86
+ ++ P +P
Sbjct: 120 TLLVLVSPVDGSEP 133
>gi|345787463|ref|XP_003432927.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Canis
lupus familiaris]
Length = 102
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V ++ D+EL G L +D ++NM+L DV E T E
Sbjct: 17 PLDLIRLSLDERIYVKLRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
>gi|255953441|ref|XP_002567473.1| Pc21g04270 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589184|emb|CAP95324.1| Pc21g04270 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 96
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 9/88 (10%)
Query: 2 AHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE--YEITAEG 59
A PS P +L+ + ++V ++GD+EL G L +D + N+VL DV E Y + +
Sbjct: 7 AGGPSVSEPLDLVRLSLDETVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDE 66
Query: 60 ------RRITKLDQILL-NGNNIAILVP 80
R I K +++L G+++ ++ P
Sbjct: 67 NEEETLRTIKKQEEMLFVRGDSVVLISP 94
>gi|84995270|ref|XP_952357.1| small nuclear ribonucleoprotein associated protein b [Theileria
annulata strain Ankara]
gi|65302518|emb|CAI74625.1| small nuclear ribonucleoprotein associated protein b, putative
[Theileria annulata]
Length = 155
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 9/61 (14%)
Query: 22 IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEIT-------AEGRRITKLDQILLNGNN 74
+ V +K +++ VGTL FD Y+N+VL D E+ +T E +R L +LL G N
Sbjct: 16 VRVTLKDNRKFVGTLVAFDKYMNLVLSDCEEFRMTLGKDKNRTEVKRT--LGFVLLRGEN 73
Query: 75 I 75
I
Sbjct: 74 I 74
>gi|392580035|gb|EIW73162.1| hypothetical protein TREMEDRAFT_24108, partial [Tremella
mesenterica DSM 1558]
Length = 79
Score = 39.7 bits (91), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 18 IGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVT-EYEITAEGRRITKLDQILLNGNNIA 76
+ I V G +E+ GTLKGFD +N+V++DV E+E R L ++L G NI
Sbjct: 15 VDKSIRVKFMGAREVTGTLKGFDQLMNLVMDDVVEEFENGMPSR---SLGLVVLRGPNIT 71
Query: 77 ILVP 80
+++P
Sbjct: 72 LILP 75
>gi|268565649|ref|XP_002639509.1| C. briggsae CBR-SNR-7 protein [Caenorhabditis briggsae]
Length = 77
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 4/75 (5%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
S+ P EL + + +I + + G++ + G L+GFD ++NMV+++ EY G I L
Sbjct: 2 SKTHPPEL-KKYMDKEIELKLNGNRHVSGILRGFDPFMNMVIDEAVEY--PKNGNSIN-L 57
Query: 66 DQILLNGNNIAILVP 80
++ GN++ I+ P
Sbjct: 58 GMTVIRGNSVVIMEP 72
>gi|358054953|dbj|GAA99020.1| hypothetical protein E5Q_05709 [Mixia osmundae IAM 14324]
Length = 133
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 50/92 (54%), Gaps = 17/92 (18%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE----------- 58
P +LI + ++++ ++GD+E+ G L +D ++NM+L +V E + +
Sbjct: 13 PFDLIRLSLSERVFIKLRGDREIRGVLHAYDQHMNMILGEVEETQTIVDLDESAAQPVGT 72
Query: 59 GRRITK-LDQILLNGNNIAIL-----VPGGSP 84
R++ + +D + + G+++ +L +PG SP
Sbjct: 73 LRQVKRQIDCLFVRGDSVVLLATRRSLPGLSP 104
>gi|261198058|ref|XP_002625431.1| predicted protein [Ajellomyces dermatitidis SLH14081]
gi|239595394|gb|EEQ77975.1| predicted protein [Ajellomyces dermatitidis SLH14081]
gi|239607755|gb|EEQ84742.1| predicted protein [Ajellomyces dermatitidis ER-3]
gi|327354601|gb|EGE83458.1| small nuclear ribonucleoprotein SmG [Ajellomyces dermatitidis
ATCC 18188]
Length = 78
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + +++V + G+++++G L+G+DV++N+VL++ E + E +L +++ GN
Sbjct: 8 LKKYMEKRLFVQLNGNRKVIGILRGYDVFMNIVLDEAVEEKNGGEK---VRLGMVVIRGN 64
Query: 74 NIAIL 78
++ +L
Sbjct: 65 SVVML 69
>gi|225679918|gb|EEH18202.1| hypothetical protein PABG_00765 [Paracoccidioides brasiliensis
Pb03]
gi|226291688|gb|EEH47116.1| hypothetical protein PADG_03214 [Paracoccidioides brasiliensis
Pb18]
Length = 94
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 5 PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEIT--AEGRRI 62
P + L R + S IW+ + + G ++GFD ++N+V++D E + E R
Sbjct: 16 PIHFIFKLLQQRSVVS-IWLYEQLAIRIEGKIRGFDEFMNLVVDDAVEVRLATKTEEERK 74
Query: 63 TKLDQILLNGNNIAIL 78
+L QILL G+N++++
Sbjct: 75 RQLGQILLKGDNVSLI 90
>gi|359493113|ref|XP_003634512.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like isoform
2 [Vitis vinifera]
gi|296081172|emb|CBI18198.3| unnamed protein product [Vitis vinifera]
Length = 109
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V ++ D+EL G L +D ++NM+L DV E T E
Sbjct: 12 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVE 60
>gi|209735714|gb|ACI68726.1| Small nuclear ribonucleoprotein E [Salmo salar]
Length = 92
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGS----KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + + ++W+ + + + G + GFD Y+N+VL+D E + + R+ L
Sbjct: 17 PINLIFRYLQNHSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKTKNRK--PL 74
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI +L
Sbjct: 75 GRIMLKGDNITLL 87
>gi|396471648|ref|XP_003838919.1| similar to small nuclear ribonucleoprotein G [Leptosphaeria
maculans JN3]
gi|312215488|emb|CBX95440.1| similar to small nuclear ribonucleoprotein G [Leptosphaeria
maculans JN3]
Length = 84
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + ++ V + G ++++G L+G+DVY+N+VL++ E + E RI +++ GN
Sbjct: 8 LKKYLEKRVLVQLNGSRKVMGILRGYDVYLNIVLDEALEEKAGGEKVRIG---MVVIRGN 64
Query: 74 NIAIL 78
++ +L
Sbjct: 65 SVVML 69
>gi|18977914|ref|NP_579271.1| small nuclear ribonucleoprotein [Pyrococcus furiosus DSM 3638]
gi|397652035|ref|YP_006492616.1| small nuclear ribonucleoprotein [Pyrococcus furiosus COM1]
gi|23822154|sp|Q8U0P4.1|RUXX_PYRFU RecName: Full=Putative snRNP Sm-like protein
gi|18893680|gb|AAL81666.1| small nuclear ribonucleoprotein, putative [Pyrococcus furiosus
DSM 3638]
gi|393189626|gb|AFN04324.1| small nuclear ribonucleoprotein [Pyrococcus furiosus COM1]
Length = 76
Score = 39.7 bits (91), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++I + + + VI+K E G L G+D+++N+VL + E+ +G + K +I+
Sbjct: 5 PLDVIHKSLDKDVLVILKKGFEFRGKLIGYDIHLNVVLANA---ELLQDGEVVKKYGKIV 61
Query: 70 LNGNNIAILVP 80
+ G+N+ + P
Sbjct: 62 IRGDNVLAISP 72
>gi|403351354|gb|EJY75167.1| putative small nuclear ribonucleoprotein E [Oxytricha trifallax]
Length = 91
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 22 IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
IW+ D + G + GFD Y+N VL+D E RR KL +I+L G+NI+++
Sbjct: 32 IWLYENADLRIEGKIIGFDEYMNTVLDDAEEIYQKKGNRR--KLGRIILKGDNISLI 86
>gi|19113214|ref|NP_596422.1| U4/U6 x U5 tri-snRNP complex Sm snRNP core protein Smg1
[Schizosaccharomyces pombe 972h-]
gi|6094213|sp|O74966.1|RUXG_SCHPO RecName: Full=Small nuclear ribonucleoprotein G; Short=snRNP-G;
AltName: Full=Sm protein G; Short=Sm-G; Short=SmG
gi|3169092|emb|CAA19285.1| U4/U6 x U5 tri-snRNP complex Sm snRNP core protein Smg1
[Schizosaccharomyces pombe]
Length = 77
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + +++V + G +++ G L+G+D+++N+VLED E ++ E K+ + + GN
Sbjct: 9 LKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEK---VKIGSVAIRGN 65
Query: 74 NIAIL 78
++ ++
Sbjct: 66 SVIMI 70
>gi|398019352|ref|XP_003862840.1| small nuclear ribonucleoprotein polypeptide e, putative
[Leishmania donovani]
gi|322501071|emb|CBZ36148.1| small nuclear ribonucleoprotein polypeptide e, putative
[Leishmania donovani]
Length = 86
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 6/86 (6%)
Query: 2 AHNPSQLLPSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITA 57
AH P+ ++ R + +W++ L G L G+D ++N+VL D TE +
Sbjct: 3 AHTRQMENPTGVVHRFMQDHQRVCVWLVHDPQMRLEGNLLGYDEFMNVVLGDTTETNL-- 60
Query: 58 EGRRITKLDQILLNGNNIAILVPGGS 83
+ +L +ILL +N+ ++ P G+
Sbjct: 61 RNNKSYRLGKILLRSDNVGVIYPIGA 86
>gi|339245769|ref|XP_003374518.1| putative small nuclear ribonucleoprotein G [Trichinella spiralis]
gi|316972305|gb|EFV55988.1| putative small nuclear ribonucleoprotein G [Trichinella spiralis]
Length = 76
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 44/73 (60%), Gaps = 4/73 (5%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
S+ P EL + + K+ + + GD+++ G L+GFD ++NMV+++ E+ T E +
Sbjct: 2 SKAHPPEL-KKYMDKKMQLRLNGDRKISGVLRGFDPFMNMVIDEAVEHLKTGEQ---IMI 57
Query: 66 DQILLNGNNIAIL 78
+++ GN++ ++
Sbjct: 58 GMVVVRGNSVTLM 70
>gi|451845213|gb|EMD58526.1| hypothetical protein COCSADRAFT_194481 [Cochliobolus sativus
ND90Pr]
Length = 136
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR-RITKLDQILLNG 72
+ + + +I V G +E++GTLKG+D +N+VL++V E +G R KL I+ G
Sbjct: 53 LSKYMDKQITVKFSGGREVIGTLKGYDQLMNLVLDEVKEALTDEDGNIRYRKLGLIVARG 112
Query: 73 NNIAILVP 80
+ ++ P
Sbjct: 113 TLLVVISP 120
>gi|390458031|ref|XP_003732042.1| PREDICTED: small nuclear ribonucleoprotein E-like [Callithrix
jacchus]
Length = 89
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
++W+ + + + G + GFD Y+N+VL+D E + R+ +L +I+L G+NI +L
Sbjct: 29 QVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITLL 84
>gi|358390848|gb|EHK40253.1| hypothetical protein TRIATDRAFT_252624 [Trichoderma atroviride
IMI 206040]
Length = 83
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + +++V + G ++++G L+G+DV++N+VL++ E +G +L +++ GN
Sbjct: 8 LKKYLDKRLFVQLNGGRKVIGVLRGYDVFLNVVLDEAVE---EKDGGEKIRLGMVVIRGN 64
Query: 74 NIAIL 78
++ +L
Sbjct: 65 SVVML 69
>gi|310794009|gb|EFQ29470.1| LSM domain-containing protein [Glomerella graminicola M1.001]
Length = 143
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK-LDQILLNG 72
+ + + +I V G +E+ GTLKG+D +N+VL++V E EG T+ L ++ G
Sbjct: 59 LSKYMDKQITVKFNGGREVTGTLKGYDALMNLVLDEVQEVMRDEEGNETTRSLGLVVARG 118
Query: 73 NNIAILVPGGSPDP 86
+ ++ P +P
Sbjct: 119 TLLVLVSPVDGSEP 132
>gi|156045543|ref|XP_001589327.1| hypothetical protein SS1G_09962 [Sclerotinia sclerotiorum 1980]
gi|154694355|gb|EDN94093.1| hypothetical protein SS1G_09962 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 94
Score = 39.7 bits (91), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 37/61 (60%), Gaps = 6/61 (9%)
Query: 22 IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEIT----AEGRRITKLDQILLNGNNIAI 77
IW+ + + G ++GFD ++N+VL+D E + AE RR L QILL G+N+++
Sbjct: 31 IWLYEQLGIRIEGKIRGFDEFMNLVLDDAVEVKQATKDKAESRR--ALGQILLKGDNVSL 88
Query: 78 L 78
+
Sbjct: 89 I 89
>gi|255087330|ref|XP_002505588.1| predicted protein [Micromonas sp. RCC299]
gi|226520858|gb|ACO66846.1| predicted protein [Micromonas sp. RCC299]
Length = 87
Score = 39.7 bits (91), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + +K IW+ D + G + GFD Y+N+VL+D E +G R T +
Sbjct: 12 PINLIFRFLQTKARIQIWLYENTDTVVEGRIIGFDEYMNLVLDDAEEVN-KKKGTRKT-V 69
Query: 66 DQILLNGNNIAILV 79
+ILL G+NI ++V
Sbjct: 70 GRILLKGDNITMMV 83
>gi|154283627|ref|XP_001542609.1| small nuclear ribonucleoprotein SmG [Ajellomyces capsulatus NAm1]
gi|150410789|gb|EDN06177.1| small nuclear ribonucleoprotein SmG [Ajellomyces capsulatus NAm1]
gi|225561938|gb|EEH10218.1| hypothetical protein HCBG_01863 [Ajellomyces capsulatus G186AR]
gi|240275552|gb|EER39066.1| hypothetical protein HCDG_07010 [Ajellomyces capsulatus H143]
gi|325091383|gb|EGC44693.1| hypothetical protein HCEG_03908 [Ajellomyces capsulatus H88]
Length = 78
Score = 39.7 bits (91), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 43/65 (66%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + +++V + G+++++G L+G+DV++N+V+++ E + E +L +++ GN
Sbjct: 8 LKKYMEKRLFVQLNGNRKVIGILRGYDVFMNIVMDEAVEEKSGGEK---VRLGMVVIRGN 64
Query: 74 NIAIL 78
++ +L
Sbjct: 65 SVVML 69
>gi|126178181|ref|YP_001046146.1| like-Sm ribonucleoprotein, core [Methanoculleus marisnigri JR1]
gi|125860975|gb|ABN56164.1| Small nuclear ribonucleoprotein, LSM family [Methanoculleus
marisnigri JR1]
Length = 75
Score = 39.7 bits (91), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 10 PSELIDRCIGSKIWVI-MKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQI 68
P +++D+ + + +I +KG +E+ G L+G+DV++N+VL D E E+ + KL +
Sbjct: 5 PLDILDQVLNRQPVIISLKGGREIRGILQGYDVHMNLVL-DKAEEEVDGAAQ---KLGTL 60
Query: 69 LLNGNNIAILVP 80
++ G+N+ + P
Sbjct: 61 IVRGDNVIYITP 72
>gi|452845306|gb|EME47239.1| hypothetical protein DOTSEDRAFT_124864 [Dothistroma septosporum
NZE10]
Length = 95
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 8/79 (10%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE--YEITAEG-----RRI 62
P +L+ + ++V ++GD+EL G L +D + N+VL DV+E Y + E R +
Sbjct: 15 PLDLVRLSLNEIVFVKLRGDRELQGRLHAYDSHCNLVLGDVSETVYVVDEEDEQENVRTV 74
Query: 63 TKLDQILL-NGNNIAILVP 80
K ++L G+++ ++ P
Sbjct: 75 KKQSEMLFVRGDSVVLISP 93
>gi|401398344|ref|XP_003880279.1| hypothetical protein NCLIV_007180 [Neospora caninum Liverpool]
gi|325114689|emb|CBZ50244.1| hypothetical protein NCLIV_007180 [Neospora caninum Liverpool]
Length = 91
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + IW+ + D + G + GFD Y+NMVL+D E + R +
Sbjct: 18 PINLIFRFFTQRMRVQIWLYEQPDMRIEGRIMGFDEYMNMVLDDAEEVYLKKRTR--IPV 75
Query: 66 DQILLNGNNIAILV 79
+ILL G N+ +++
Sbjct: 76 GRILLKGENVTLIM 89
>gi|426257308|ref|XP_004022271.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Ovis aries]
Length = 92
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + +K +W+ + + + G + GFD YVN+VL+D E + R+ +L
Sbjct: 17 PINLIFRYLQNKSQIQVWLYEQVNIWIEGCIIGFDEYVNLVLDDAEEIHSKTKSRK--QL 74
Query: 66 DQILLNGNNIAIL 78
I+L G+NI +L
Sbjct: 75 GWIMLKGDNITLL 87
>gi|383857174|ref|XP_003704080.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Megachile
rotundata]
Length = 103
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVL----EDVTEYEITAEG----RR 61
P +LI + +I+V M+ ++EL G L +D ++NMVL E VT EI E R
Sbjct: 16 PLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMVLGEAEETVTTVEIDEETYEEVYR 75
Query: 62 ITK--LDQILLNGNNIAILVPGGSPDP 86
TK + + + G+ + ++ P P
Sbjct: 76 TTKRNISMLFVRGDGVILVSPPSMRAP 102
>gi|342321540|gb|EGU13473.1| Hypothetical Protein RTG_00195 [Rhodotorula glutinis ATCC 204091]
Length = 97
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P +LI + +++V ++GD+EL G L +D ++NM+L +V E
Sbjct: 9 PFDLIRVSLSERVFVKLRGDRELRGVLHAYDGHMNMILSEVEE 51
>gi|110755468|ref|XP_001121255.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like [Apis
mellifera]
gi|340729056|ref|XP_003402825.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform 1
[Bombus terrestris]
gi|340729058|ref|XP_003402826.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3-like isoform 2
[Bombus terrestris]
gi|350401475|ref|XP_003486164.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Bombus
impatiens]
gi|380013750|ref|XP_003690912.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Apis
florea]
Length = 103
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVL----EDVTEYEITAEG----RR 61
P +LI + +I+V M+ ++EL G L +D ++NMVL E VT EI E R
Sbjct: 16 PLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMVLGEAEETVTTVEIDEETYEEVYR 75
Query: 62 ITK--LDQILLNGNNIAILVPGGSPDP 86
TK + + + G+ + ++ P P
Sbjct: 76 TTKRNISMLFVRGDGVILVSPPSMRAP 102
>gi|326498435|dbj|BAJ98645.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326513560|dbj|BAJ87799.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 101
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P +LI + +I+V ++ D+EL G L +D ++NM+L DV E
Sbjct: 16 PLDLIRLSLDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEE 58
>gi|218883408|ref|YP_002427790.1| Small nuclear ribonucleoprotein, LSM family [Desulfurococcus
kamchatkensis 1221n]
gi|218765024|gb|ACL10423.1| Small nuclear ribonucleoprotein, LSM family [Desulfurococcus
kamchatkensis 1221n]
Length = 93
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P +++ G + V +KG E VGTL D +N+VL D TEY +GR ++ +I+
Sbjct: 13 PLKVLKSAEGQVVLVRIKGGIEYVGTLDLIDPTMNIVLSDCTEY--GGDGRPTSRYGKII 70
Query: 70 LNGNNIAIL 78
+ G+++ +
Sbjct: 71 IRGSHVEFI 79
>gi|156378619|ref|XP_001631239.1| predicted protein [Nematostella vectensis]
gi|156218276|gb|EDO39176.1| predicted protein [Nematostella vectensis]
Length = 91
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 7/80 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ IW+ + + + G + GFD Y+N+VL++ E + + R+ L
Sbjct: 15 PINLIFRYLQNRSKIQIWLYEQVNMRIEGHIIGFDEYMNLVLDEAEEVHLKTKTRK--PL 72
Query: 66 DQILLNGNNIAILVPGGSPD 85
+IL+ G+NI +L+ SP
Sbjct: 73 GRILIKGDNITLLM-NASPS 91
>gi|341882586|gb|EGT38521.1| hypothetical protein CAEBREN_25112 [Caenorhabditis brenneri]
gi|341895108|gb|EGT51043.1| hypothetical protein CAEBREN_10134 [Caenorhabditis brenneri]
Length = 77
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
S+ P EL + + ++ + + G++ + G L+GFD ++NMV+++ EY T G + L
Sbjct: 2 SKTHPPEL-KKYMDKEMDLKLNGNRHVSGILRGFDPFMNMVIDEAVEY--TKSGASVN-L 57
Query: 66 DQILLNGNNIAILVP 80
++ GN++ I+ P
Sbjct: 58 GMTVIRGNSVVIMEP 72
>gi|221058403|ref|XP_002259847.1| small nuclear ribonucleoprotein [Plasmodium knowlesi strain H]
gi|193809920|emb|CAQ41114.1| small nuclear ribonucleoprotein, putative [Plasmodium knowlesi
strain H]
Length = 96
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILV 79
+IW+ K D + G + GFD Y+NMVL++ E + R+ L +ILL G+ I +++
Sbjct: 30 QIWLYDKPDTRIEGKILGFDEYMNMVLDESAEVSVKKNTRK--DLGKILLKGDTITLIM 86
>gi|146182714|ref|XP_001471048.1| Small nuclear ribonucleoprotein E, putative [Tetrahymena
thermophila]
gi|146143746|gb|EDK31351.1| Small nuclear ribonucleoprotein E, putative [Tetrahymena
thermophila SB210]
Length = 140
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 13 LIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNG 72
+ + + +IW+ + +L G + GFD Y+NMVL++ +E + +R ++ +ILL G
Sbjct: 19 FLQKQVRVQIWLFENTEIKLEGKIIGFDEYMNMVLDETSEVDCKTNQKR--EIGRILLKG 76
Query: 73 NNIAIL 78
NI ++
Sbjct: 77 ENITLI 82
>gi|213408613|ref|XP_002175077.1| U6 snRNP-associated protein Lsm6 [Schizosaccharomyces japonicus
yFS275]
gi|212003124|gb|EEB08784.1| U6 snRNP-associated protein Lsm6 [Schizosaccharomyces japonicus
yFS275]
Length = 75
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 3/66 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
PSE +++ IG +++ + + G L D Y+N+ LE+ EY G++ +
Sbjct: 5 PSEFLNKVIGKPVFIRLNSGVDYKGILSCLDGYMNLALENTEEY---VNGKKTNEYGDAF 61
Query: 70 LNGNNI 75
+ GNN+
Sbjct: 62 IRGNNV 67
>gi|119589572|gb|EAW69166.1| hCG23490, isoform CRA_a [Homo sapiens]
Length = 92
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + + G + GFD Y+N+VL+D E + R+ +L
Sbjct: 17 PISLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 74
Query: 66 DQILLNGNNIAIL 78
+I+L G NI +L
Sbjct: 75 GRIMLKGGNITLL 87
>gi|307206257|gb|EFN84322.1| U6 snRNA-associated Sm-like protein LSm3 [Harpegnathos saltator]
Length = 96
Score = 39.3 bits (90), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 10/87 (11%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVL----EDVTEYEITAEG----RR 61
P +LI + +I+V M+ ++EL G L +D ++NMVL E VT EI E R
Sbjct: 9 PLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMVLGEAEETVTTVEIDEETYEEVYR 68
Query: 62 ITK--LDQILLNGNNIAILVPGGSPDP 86
TK + + + G+ + ++ P P
Sbjct: 69 TTKRNISMLFVRGDGVILVSPPSMRAP 95
>gi|116753552|ref|YP_842670.1| small nuclear ribonucleoprotein [Methanosaeta thermophila PT]
gi|116665003|gb|ABK14030.1| Small nuclear ribonucleoprotein, LSM family [Methanosaeta
thermophila PT]
Length = 71
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++++ + S + V +K + G L+G+D+++N+VLE+ E AEG K+ ++
Sbjct: 5 PLDILNESLNSPVIVRLKDGRAFRGELQGYDIHMNLVLENTEE---IAEG-TARKIGAVI 60
Query: 70 LNGNNIAILVP 80
+ G+N+ + P
Sbjct: 61 VRGDNVVYISP 71
>gi|338259|gb|AAB59365.1| small nuclear ribonucleic protein, partial [Homo sapiens]
Length = 92
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
++W+ + + + G + GFD Y+N+VL+D E + R+ +L +I+L G+NI +L
Sbjct: 32 QVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITLL 87
>gi|307213117|gb|EFN88639.1| Probable small nuclear ribonucleoprotein E [Harpegnathos saltator]
Length = 295
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + G + GFD Y+N+VL+D EY + R+ L
Sbjct: 217 PINLIFRYLQNRSRVQVWLFENVNLRIEGHIVGFDEYMNLVLDDAEEYYQKTKVRK--PL 274
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI ++
Sbjct: 275 GRIMLKGDNITLI 287
>gi|397779277|ref|YP_006543750.1| Sm ribonucleoprotein [Methanoculleus bourgensis MS2]
gi|396937779|emb|CCJ35034.1| Sm ribonucleoprotein [Methanoculleus bourgensis MS2]
Length = 75
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 45/72 (62%), Gaps = 5/72 (6%)
Query: 10 PSELIDRCIGSKIWVI-MKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQI 68
P +++D+ + + +I +KG +E+ G L+G+DV++N+VL D E E+ + KL +
Sbjct: 5 PLDILDQVLNRQPVIISLKGGREIRGVLQGYDVHMNLVL-DKAEEEMDGA---VQKLGTL 60
Query: 69 LLNGNNIAILVP 80
++ G+N+ + P
Sbjct: 61 IVRGDNVIYITP 72
>gi|171676173|ref|XP_001903040.1| hypothetical protein [Podospora anserina S mat+]
gi|170936152|emb|CAP60812.1| unnamed protein product [Podospora anserina S mat+]
Length = 153
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK-LDQILLNG 72
+ + + +I V G +E+ GTLKG+D +N+VL++V E EG T+ L +++ G
Sbjct: 67 LKKYMDKRITVKFNGGREVTGTLKGYDALMNLVLDEVQEAVRDDEGNETTRSLGLVVVRG 126
Query: 73 NNIAILVP 80
+ ++ P
Sbjct: 127 TLLVVISP 134
>gi|167527011|ref|XP_001747838.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773587|gb|EDQ87225.1| predicted protein [Monosiga brevicollis MX1]
Length = 126
Score = 39.3 bits (90), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY 53
+DR +I V G +E+ G LKG D +NMVL+D EY
Sbjct: 39 LDRFTDKRIRVKFAGGREVTGILKGHDQLLNMVLDDAQEY 78
>gi|237844609|ref|XP_002371602.1| small nuclear ribonucleoprotein E, putative [Toxoplasma gondii
ME49]
gi|211969266|gb|EEB04462.1| small nuclear ribonucleoprotein E, putative [Toxoplasma gondii
ME49]
gi|221482996|gb|EEE21320.1| small nuclear ribonucleoprotein E, putative [Toxoplasma gondii
GT1]
gi|221503930|gb|EEE29607.1| small nuclear ribonucleoprotein E, putative [Toxoplasma gondii
VEG]
Length = 91
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + IW+ + D + G + GFD Y+NMVL+D E + R +
Sbjct: 18 PINLIFRFFTQRMRVQIWLYEQPDMRIEGRIMGFDEYMNMVLDDAEEVYLKKRTR--IPV 75
Query: 66 DQILLNGNNIAILV 79
+ILL G N+ +++
Sbjct: 76 GRILLKGENVTLIM 89
>gi|170097019|ref|XP_001879729.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645132|gb|EDR09380.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 99
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 38/68 (55%), Gaps = 4/68 (5%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR-RITKLDQILLNG 72
+ + + KI V G +E+ G LKG+D +N+VL++V E A G + +L ++L G
Sbjct: 20 LSKYVNEKIRVKFTGGREVTGILKGYDQLLNLVLDEVEE---EASGNPKPRQLGLVVLRG 76
Query: 73 NNIAILVP 80
I IL P
Sbjct: 77 PTITILSP 84
>gi|452002106|gb|EMD94564.1| hypothetical protein COCHEDRAFT_1221931 [Cochliobolus
heterostrophus C5]
Length = 135
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR-RITKLDQILLNG 72
+ + + +I V G +E++GTLKG+D +N+VL++V E G R KL I+ G
Sbjct: 52 LSKYMDKQITVKFSGGREVIGTLKGYDQLMNLVLDEVKEALTDEHGNIRYRKLGLIVARG 111
Query: 73 NNIAILVP 80
+ ++ P
Sbjct: 112 TLLVVISP 119
>gi|390601213|gb|EIN10607.1| like-Sm ribonucleo protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 77
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + K++V ++G +++ GTL+G+D+++N+V++D E A+ L +++ GN
Sbjct: 9 LKKFMDKKLFVHLQGGRKVSGTLRGYDLFLNLVIDDALEETTPAQKH---PLGTVVIRGN 65
Query: 74 NIA 76
++
Sbjct: 66 SVT 68
>gi|154149642|ref|YP_001403260.1| like-Sm ribonucleoprotein, core [Methanoregula boonei 6A8]
gi|153998194|gb|ABS54617.1| Like-Sm ribonucleoprotein, core [Methanoregula boonei 6A8]
Length = 76
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 44/72 (61%), Gaps = 5/72 (6%)
Query: 10 PSELIDRCIGSK-IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQI 68
P +++D + + + V +KG +E+ G L+G+DV++N+VL+ E E ++ K+ +
Sbjct: 5 PLDILDLVLNRQPVIVSLKGGREIRGVLQGYDVHMNLVLDKAEE----TENGQVVKVGTL 60
Query: 69 LLNGNNIAILVP 80
++ G+N+ + P
Sbjct: 61 IVRGDNVIYISP 72
>gi|149408455|ref|XP_001513314.1| PREDICTED: small nuclear ribonucleoprotein E-like
[Ornithorhynchus anatinus]
Length = 92
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + + G + GFD Y+N+VL+D E + R+ +L
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 74
Query: 66 DQILLNGNNIAIL 78
+++L G+NI +L
Sbjct: 75 GRVMLKGDNITLL 87
>gi|109514130|ref|XP_001065908.1| PREDICTED: small nuclear ribonucleoprotein E [Rattus norvegicus]
Length = 92
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + + G + GFD Y+N+VL+D E + R+ +L
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEQVNIRIKGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 74
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI +L
Sbjct: 75 GRIMLKGDNITLL 87
>gi|240274594|gb|EER38110.1| conserved hypothetical protein [Ajellomyces capsulatus H143]
gi|325090925|gb|EGC44235.1| conserved hypothetical protein [Ajellomyces capsulatus H88]
Length = 169
Score = 39.3 bits (90), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK-LDQILLNGNNIAILV 79
++ V G +E+ GTLKG+D +N+VL+DV E EG + T+ L I+ G + ++
Sbjct: 92 EVCVKFNGGREVTGTLKGYDQLMNLVLDDVREVMRDDEGNQTTRSLGLIVARGTLLVLIS 151
Query: 80 P 80
P
Sbjct: 152 P 152
>gi|402086284|gb|EJT81182.1| hypothetical protein GGTG_01166 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 95
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 7/81 (8%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY------EITAEGRRIT 63
P L+ + ++V ++GD+EL G L +D + N+VL DV E E A+ + ++
Sbjct: 12 PFGLVRLLLDEVVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETHYMQDEEDEADLKTVS 71
Query: 64 -KLDQILLNGNNIAILVPGGS 83
KL+ + + G+++ ++ P S
Sbjct: 72 RKLEMLFVRGDSVVLISPSES 92
>gi|440292632|gb|ELP85819.1| small nuclear ribonucleoprotein Sm D2, putative [Entamoeba
invadens IP1]
Length = 100
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 12/86 (13%)
Query: 5 PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY----EITAEGR 60
P QLL +E +++ S++ + + +K+LV +K FD + NMVLE+V EY + EG+
Sbjct: 12 PFQLL-TEAVEK--HSQVIINCRNNKKLVCRVKAFDRHFNMVLENVKEYWTEMQKMPEGK 68
Query: 61 RITK-----LDQILLNGNNIAILVPG 81
K + ++ L G+++ I+V
Sbjct: 69 PKPKTCHRNVSKMFLRGDSVIIVVKA 94
>gi|294886769|ref|XP_002771844.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|239875644|gb|EER03660.1| small nuclear ribonucleoprotein, putative [Perkinsus marinus ATCC
50983]
gi|302372346|gb|ADL28384.1| putative Sm-like RNA-binding protein [Perkinsus marinus ATCC
50439]
Length = 92
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY------EITAEGRRIT 63
P EL+ + +I V +GD+ L G L +D ++NMVL +V E E R I
Sbjct: 10 PFELVKLSLDERIQVKCRGDRYLRGRLVAYDSHLNMVLSEVEEVIEPPVKEGVKHRRPIR 69
Query: 64 K-LDQILLNGNNIAILVP 80
+ LD I + G+ I ++ P
Sbjct: 70 RDLDTIFVRGDGIILVNP 87
>gi|119611901|gb|EAW91495.1| small nuclear ribonucleoprotein polypeptide E, isoform CRA_b
[Homo sapiens]
Length = 84
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
++W+ + + + G + GFD Y+N+VL+D E + R+ +L +I+L G+NI +L
Sbjct: 24 QVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITLL 79
>gi|432859400|ref|XP_004069089.1| PREDICTED: small nuclear ribonucleoprotein E-like [Oryzias
latipes]
Length = 92
Score = 39.3 bits (90), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + + G + GFD Y+N+VL+D E + + R+ L
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKTKNRK--PL 74
Query: 66 DQILLNGNNIAIL 78
+++L G+NI +L
Sbjct: 75 GRVMLKGDNITLL 87
>gi|47227397|emb|CAF96946.1| unnamed protein product [Tetraodon nigroviridis]
Length = 92
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + + G + GFD Y+N+VL+D E + + R+ L
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHMKTKNRK--PL 74
Query: 66 DQILLNGNNIAIL 78
+++L G+NI +L
Sbjct: 75 GRVMLKGDNITLL 87
>gi|326427782|gb|EGD73352.1| LSM domain-containing protein [Salpingoeca sp. ATCC 50818]
Length = 77
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
PS+ + + K+ V + G L D ++N+ LED EY G++ K
Sbjct: 5 PSDFLKKIHRQKVVVKLNSGITFTGRLAALDAFMNVALEDTEEY---VNGKQTAKYGDAF 61
Query: 70 LNGNNIAILVPG 81
+ GNN+ + P
Sbjct: 62 VRGNNVLYISPA 73
>gi|242009034|ref|XP_002425298.1| snrnp sm protein, putative [Pediculus humanus corporis]
gi|212509063|gb|EEB12560.1| snrnp sm protein, putative [Pediculus humanus corporis]
Length = 102
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ ++EL G L +D ++NMVL D E T E
Sbjct: 16 PLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMVLGDAEETVTTVE 64
>gi|351707608|gb|EHB10527.1| Small nuclear ribonucleoprotein E [Heterocephalus glaber]
Length = 92
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGS----KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + + ++W+ + + + G + GFD Y+N+VL+D E + R+ +L
Sbjct: 17 PINLIFRYLQNVRKIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 74
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI +L
Sbjct: 75 GRIMLKGDNITLL 87
>gi|296222762|ref|XP_002757308.1| PREDICTED: small nuclear ribonucleoprotein E-like [Callithrix
jacchus]
Length = 97
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 10 PSELIDRCIGSKIWVIM----KGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + +++W+ + + + + G + G D Y+N+VL D E + R+ +L
Sbjct: 17 PINLIFRYLQNRLWIQVWPYEQVNMRIEGCVIGIDKYMNLVLGDAEEIHSKTKSRK--RL 74
Query: 66 DQILLNGNNIAILVP 80
Q++L G+N+ +L P
Sbjct: 75 GQMMLKGDNVTLLQP 89
>gi|148707697|gb|EDL39644.1| small nuclear ribonucleoprotein E, isoform CRA_b [Mus musculus]
Length = 86
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
++W+ + + + G + GFD Y+N+VL+D E + R+ +L +I+L G+NI +L
Sbjct: 26 QVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITLL 81
>gi|425766459|gb|EKV05069.1| Small nuclear ribonucleoprotein SmE, putative [Penicillium
digitatum PHI26]
gi|425781600|gb|EKV19555.1| Small nuclear ribonucleoprotein SmE, putative [Penicillium
digitatum Pd1]
Length = 87
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 13 LIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITA----EGRRITKLDQI 68
+ + I +W+ + + GT++GFD ++N+V+E+ E + E RR L QI
Sbjct: 17 FLQKRIPVSVWLYEQLAFRIEGTIRGFDEFMNLVIENAVEVRLATKTEEEKRR--PLGQI 74
Query: 69 LLNGNNIAIL 78
LL G+N++++
Sbjct: 75 LLKGDNVSLI 84
>gi|115383910|ref|XP_001208502.1| hypothetical protein ATEG_01137 [Aspergillus terreus NIH2624]
gi|114196194|gb|EAU37894.1| hypothetical protein ATEG_01137 [Aspergillus terreus NIH2624]
Length = 119
Score = 39.3 bits (90), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQ 67
+LP L+ G + V +K + L G L D ++N++L++V + + EG R KL +
Sbjct: 1 MLPLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILKEVV--QTSPEGDRFFKLPE 58
Query: 68 ILLNGNNIAIL 78
+ + GNNI L
Sbjct: 59 VYIRGNNIKYL 69
>gi|226468892|emb|CAX76474.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
Length = 231
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY-EITAEGRRITKLDQ----- 67
I + + +I M+ ++LVGT K FD ++N++L D E+ ++ ++ + K Q
Sbjct: 9 ISQHVNYRIRCTMQDGRQLVGTFKAFDRHMNIILCDCDEFRQVKSKTAKQDKDRQEKRSL 68
Query: 68 --ILLNGNNIAILVPGGSPDPE 87
+LL G ++ + G P PE
Sbjct: 69 GLVLLRGEHVVTMNVDGPPPPE 90
>gi|241171152|ref|XP_002410602.1| snrnp sm protein, putative [Ixodes scapularis]
gi|215494871|gb|EEC04512.1| snrnp sm protein, putative [Ixodes scapularis]
Length = 102
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P +L+ + KI+V M+ ++EL G L +D ++NM+L DV E
Sbjct: 16 PLDLVRLSLDEKIYVKMRNERELRGRLHAYDQHLNMILGDVEE 58
>gi|388579558|gb|EIM19880.1| DUF21-domain-containing protein [Wallemia sebi CBS 633.66]
Length = 625
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 34/53 (64%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLD 66
+ + + ++ V ++ ++++ G L+GFD+++N+VL+D ++ E RI ++
Sbjct: 10 LKKYMDKRVLVHLQANRKVTGQLRGFDLFLNLVLDDASDETFAGEKTRIGQIS 62
>gi|323354402|gb|EGA86241.1| Lsm1p [Saccharomyces cerevisiae VL3]
Length = 167
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 17 CIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQ--ILLNGNN 74
+ KI+V+++ + L G L+ FD Y N++L+D E +E + + D+ ++ G N
Sbjct: 49 SVDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEENKYAEEDRGIFMIRGEN 108
Query: 75 IAIL 78
+ +L
Sbjct: 109 VVML 112
>gi|242799446|ref|XP_002483380.1| small nuclear ribonucleoprotein SmG, putative [Talaromyces
stipitatus ATCC 10500]
gi|218716725|gb|EED16146.1| small nuclear ribonucleoprotein SmG, putative [Talaromyces
stipitatus ATCC 10500]
Length = 77
Score = 39.3 bits (90), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 44/65 (67%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + +++V + G+++++G L+G+DV++N+VL+D E E G+ +L +++ GN
Sbjct: 8 LKKYMEKRLFVQLNGNRKVIGILRGYDVFMNIVLDDAVE-EKPDGGK--DRLGMVVIRGN 64
Query: 74 NIAIL 78
++ +L
Sbjct: 65 SVVML 69
>gi|391329361|ref|XP_003739143.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B'-like [Metaseiulus occidentalis]
Length = 209
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 41/78 (52%), Gaps = 10/78 (12%)
Query: 18 IGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY-EITA-------EGRRITKLDQIL 69
I ++ V ++ + +GT K FD ++N++L + E+ +I A E +R+ L +L
Sbjct: 13 INYRMRVTLQDSRSFIGTFKAFDKHMNLILTECEEFRKIKAKQGGQEREEKRVLGL--VL 70
Query: 70 LNGNNIAILVPGGSPDPE 87
L G NI + G P PE
Sbjct: 71 LRGENIVSMTVEGPPPPE 88
>gi|390981169|pdb|4EMK|C Chain C, Crystal Structure Of Splsm567
Length = 113
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 4/71 (5%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT----KLDQIL 69
+ R +I G +++ G LKGFD N+VL+DV E E ++T KL ++
Sbjct: 28 LSRYQDQRIQATFTGGRQITGILKGFDQLXNLVLDDVEEQLRNPEDGKLTGAIRKLGLVV 87
Query: 70 LNGNNIAILVP 80
+ G + ++ P
Sbjct: 88 VRGTTLVLIAP 98
>gi|323332984|gb|EGA74386.1| Lsm1p [Saccharomyces cerevisiae AWRI796]
Length = 167
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 17 CIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQ--ILLNGNN 74
+ KI+V+++ + L G L+ FD Y N++L+D E +E + + D+ ++ G N
Sbjct: 49 SVDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEENKYAEEDRGIFMIRGEN 108
Query: 75 IAIL 78
+ +L
Sbjct: 109 VVML 112
>gi|326933691|ref|XP_003212934.1| PREDICTED: small nuclear ribonucleoprotein E-like [Meleagris
gallopavo]
Length = 85
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
++W+ + + + G + GFD Y+N+VL+D E + R+ +L +I+L G+NI +L
Sbjct: 25 QVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITLL 80
>gi|326435095|gb|EGD80665.1| LSM domain-containing protein [Salpingoeca sp. ATCC 50818]
Length = 91
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + ++ V M+G++ L G L +D ++NMVL DV E T+E
Sbjct: 8 PLDLIRLSLDERVTVKMRGNRVLSGQLHAYDQHLNMVLSDVVETITTSE 56
>gi|281200512|gb|EFA74730.1| LSM domain-containing protein [Polysphondylium pallidum PN500]
Length = 99
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P +LI + +I+V M+ D+EL G L +D ++NM+L +V E
Sbjct: 14 PLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSNVEE 56
>gi|407929252|gb|EKG22086.1| hypothetical protein MPH_00541 [Macrophomina phaseolina MS6]
Length = 81
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + +++V + G ++++G L+G+DV++N+VL++ E + E RI ++ GN
Sbjct: 8 LKKYLDKRLFVQLNGSRKVIGVLRGYDVFLNIVLDEAVEEKAGGEKVRIG---MCVIRGN 64
Query: 74 NIAIL 78
++ +L
Sbjct: 65 SVVML 69
>gi|366992940|ref|XP_003676235.1| hypothetical protein NCAS_0D02930 [Naumovozyma castellii CBS 4309]
gi|342302101|emb|CCC69874.1| hypothetical protein NCAS_0D02930 [Naumovozyma castellii CBS 4309]
Length = 110
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 6/78 (7%)
Query: 10 PSELIDRCIGSKIWVI--MKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR----RIT 63
P LI + SK+ VI ++ + +++ +K FD + NMVLE+V E +G+ R
Sbjct: 30 PMSLITDSMNSKVPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTEKKGKSTVNRER 89
Query: 64 KLDQILLNGNNIAILVPG 81
+ ++ L G+++ ++V
Sbjct: 90 FISKLFLRGDSVIVIVKA 107
>gi|225561488|gb|EEH09768.1| predicted protein [Ajellomyces capsulatus G186AR]
Length = 174
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK-LDQILLNGNNIAILV 79
++ V G +E+ GTLKG+D +N+VL+DV E EG + T+ L I+ G + ++
Sbjct: 97 EVCVKFNGGREVTGTLKGYDQLMNLVLDDVREVMRDDEGNQTTRSLGLIVARGTLLVLIS 156
Query: 80 P 80
P
Sbjct: 157 P 157
>gi|443898710|dbj|GAC76044.1| UDP-glucose pyrophosphorylase [Pseudozyma antarctica T-34]
Length = 148
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 13 LIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQ--ILL 70
L+D C+ K+ V+++ K+L+G L+ +D + N+VL+D E G R + + L+
Sbjct: 18 LVD-CVDKKMLVVLRDGKKLIGVLRSYDQFANLVLQDTVERVFV--GNRYGDIARGVFLV 74
Query: 71 NGNNIAIL 78
G N+ ++
Sbjct: 75 RGENVVLM 82
>gi|17544592|ref|NP_502034.1| Protein LSM-7 [Caenorhabditis elegans]
gi|3881724|emb|CAA93428.1| Protein LSM-7 [Caenorhabditis elegans]
Length = 104
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 5/71 (7%)
Query: 16 RCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY-----EITAEGRRITKLDQILL 70
R + +I V +G +E G L+GFD +NMVL+D EY + G +L I+
Sbjct: 18 RFLDKEIRVKFQGGREASGVLRGFDQLLNMVLDDCREYLRDPQNPSVVGDETRQLGLIVA 77
Query: 71 NGNNIAILVPG 81
G I ++ P
Sbjct: 78 RGTAITVVSPA 88
>gi|338724569|ref|XP_003364968.1| PREDICTED: small nuclear ribonucleoprotein E-like, partial [Equus
caballus]
Length = 71
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
++W+ + + + G + GFD Y+N+VL+D E + R+ +L +I+L G+NI +L
Sbjct: 11 QVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QLGRIMLKGDNITLL 66
>gi|302696809|ref|XP_003038083.1| hypothetical protein SCHCODRAFT_102915 [Schizophyllum commune
H4-8]
gi|300111780|gb|EFJ03181.1| hypothetical protein SCHCODRAFT_102915, partial [Schizophyllum
commune H4-8]
Length = 95
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 29/43 (67%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P +LI + +++V ++GD++L G L +D ++N++L DV E
Sbjct: 10 PFDLIRLSLSERVFVKLRGDRQLEGVLHAYDGHMNLILSDVEE 52
>gi|255717787|ref|XP_002555174.1| KLTH0G03102p [Lachancea thermotolerans]
gi|238936558|emb|CAR24737.1| KLTH0G03102p [Lachancea thermotolerans CBS 6340]
Length = 94
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 22 IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEI-TAEGRRI----TKLDQILLNGNNIA 76
W+ + + G + GFD ++N+V++D +E I T G + KL +ILL G+NI
Sbjct: 28 FWLFEQVQTRIRGRISGFDEFMNVVIDDASEIPIDTKTGSELPDQAVKLGRILLKGDNIT 87
Query: 77 ILVP 80
++ P
Sbjct: 88 LITP 91
>gi|170785183|pdb|3BW1|A Chain A, Crystal Structure Of Homomeric Yeast Lsm3 Exhibiting
Novel Octameric Ring Organisation
gi|170785184|pdb|3BW1|B Chain B, Crystal Structure Of Homomeric Yeast Lsm3 Exhibiting
Novel Octameric Ring Organisation
Length = 96
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE--YEIT----AEGRRIT 63
P +L+ + ++++ ++G + LVGTL+ FD + N+VL D E Y++ +E R
Sbjct: 11 PLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESER-- 68
Query: 64 KLDQILLNGNNIAILVPGGSPD 85
+ + + + G+ + ++ D
Sbjct: 69 RCEMVFIRGDTVTLISTPSEDD 90
>gi|159479600|ref|XP_001697878.1| Sm protein [Chlamydomonas reinhardtii]
gi|158273976|gb|EDO99761.1| Sm protein [Chlamydomonas reinhardtii]
Length = 97
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V ++G++EL G L +D ++NM+L +V E T E
Sbjct: 13 PLDLIRLSLDERIYVKLRGERELRGRLHAYDQHLNMILGEVEETLTTVE 61
>gi|126465841|ref|YP_001040950.1| LSM family small nuclear ribonucleoprotein [Staphylothermus
marinus F1]
gi|126014664|gb|ABN70042.1| Small nuclear ribonucleoprotein, LSM family [Staphylothermus
marinus F1]
Length = 75
Score = 39.3 bits (90), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
MA ++L L G + + +KG++E+ G LK +D ++N+VL+D E + R
Sbjct: 1 MAETAHKILLEHL-----GDIVLIKLKGEREVRGKLKSYDQHLNIVLDDAEEIKEDGSTR 55
Query: 61 RITKLDQILLNGNNIAILVP 80
KL I++ G+ + ++ P
Sbjct: 56 ---KLGTIVIRGDTVILISP 72
>gi|440797084|gb|ELR18179.1| small nuclear ribonucleoprotein G, putative [Acanthamoeba
castellanii str. Neff]
Length = 76
Score = 39.3 bits (90), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ R + K+ + + ++ + G L+GFD ++N+VLED E + E +L +++ GN
Sbjct: 9 LRRYMDKKLAIRLNANRRVSGILRGFDQFMNLVLEDTVEEVSSTEK---NELGMVVIRGN 65
Query: 74 NIAILVP 80
++ ++ P
Sbjct: 66 SVILIEP 72
>gi|365760012|gb|EHN01761.1| Lsm1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401839808|gb|EJT42849.1| LSM1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 172
Score = 39.3 bits (90), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 17 CIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQ--ILLNGNN 74
+ KI+V+++ + L G L+ FD Y N++L+D E +E + + D+ ++ G N
Sbjct: 49 SVDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEENKYAEEDRGIFMIRGEN 108
Query: 75 IAIL 78
+ +L
Sbjct: 109 VVML 112
>gi|355561171|gb|EHH17857.1| hypothetical protein EGK_14338 [Macaca mulatta]
Length = 102
Score = 39.3 bits (90), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I V M+ D+EL G L +D Y NM+L DV E T E
Sbjct: 17 PLDLIRLSLDERIDVKMRNDQELRGRLHAYDQYSNMILGDVEETVTTIE 65
>gi|392571823|gb|EIW64995.1| Sm-like ribonucleo protein [Trametes versicolor FP-101664 SS1]
Length = 87
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%), Gaps = 3/58 (5%)
Query: 22 IWVIMKGDKELVGTLKGFDVYVNMVLEDVTE-YEITAEGRRITKLDQILLNGNNIAIL 78
IW+ D + GT+ GFD ++N+V+ED E Y A+ RR +L +ILL G+NI ++
Sbjct: 28 IWLYDNIDMRIEGTIIGFDEFMNIVIEDAAEVYVKDAKPRR--ELGRILLKGDNITLI 83
>gi|343429796|emb|CBQ73368.1| related to LSM1-Sm-like (Lsm) protein [Sporisorium reilianum
SRZ2]
Length = 148
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 13 LIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQ--ILL 70
L+D C+ K+ V+++ K+L+G L+ +D + N+VL+D E G R + + L+
Sbjct: 18 LVD-CVDKKMLVVLRDGKKLIGVLRSYDQFANLVLQDTVERVFV--GNRYGDIARGVFLV 74
Query: 71 NGNNIAIL 78
G N+ ++
Sbjct: 75 RGENVVLM 82
>gi|327298737|ref|XP_003234062.1| small nuclear ribonucleoprotein E [Trichophyton rubrum CBS
118892]
gi|326464240|gb|EGD89693.1| small nuclear ribonucleoprotein E [Trichophyton rubrum CBS
118892]
gi|326472547|gb|EGD96556.1| small nuclear ribonucleoprotein SmE [Trichophyton tonsurans CBS
112818]
gi|326484188|gb|EGE08198.1| small nuclear ribonucleoprotein SmE [Trichophyton equinum CBS
127.97]
Length = 95
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 42/71 (59%), Gaps = 6/71 (8%)
Query: 12 ELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITA----EGRRITKLDQ 67
+L+ + IW+ + + G ++GFD ++N+V++D E ++ E RR +L Q
Sbjct: 22 KLLQQRTTVSIWLYEQLAVRIEGKIRGFDEFMNLVVDDAVEVKLATKTEEESRR--QLGQ 79
Query: 68 ILLNGNNIAIL 78
ILL G+N++++
Sbjct: 80 ILLKGDNVSLI 90
>gi|194910032|ref|XP_001982061.1| GG11245 [Drosophila erecta]
gi|190656699|gb|EDV53931.1| GG11245 [Drosophila erecta]
Length = 176
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + K++V M+ ++EL G L FD ++N+VL D E T E
Sbjct: 18 PLDLIRLSLDEKVYVKMRNERELRGRLHAFDQHLNIVLGDAEETVTTVE 66
>gi|170106101|ref|XP_001884262.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164640608|gb|EDR04872.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 78
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + K++V ++G +++ GTL+G+D+++N+V++D E A+ I +++ GN
Sbjct: 9 LKKFMDKKLFVHLQGGRKVSGTLRGYDLFLNLVIDDAIEETTPAQKHPI---GTVVIRGN 65
Query: 74 NIA 76
++
Sbjct: 66 SVT 68
>gi|109068881|ref|XP_001099845.1| PREDICTED: u6 snRNA-associated Sm-like protein LSm3 [Macaca
mulatta]
gi|355748132|gb|EHH52629.1| hypothetical protein EGM_13096 [Macaca fascicularis]
Length = 102
Score = 38.9 bits (89), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I V M+ D+EL G L +D Y NM+L DV E T E
Sbjct: 17 PLDLIRLSLDERIDVKMRNDQELRGRLHAYDQYSNMILGDVEETVTTIE 65
>gi|401624580|gb|EJS42636.1| lsm3p [Saccharomyces arboricola H-6]
Length = 89
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE--YEITAE--GRRITKL 65
P +L+ + ++++ ++G + LVGTL+ FD + N+VL D E Y++ E +
Sbjct: 4 PLDLLKLNLDERVYIKLRGARSLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRC 63
Query: 66 DQILLNGNNIAILVPGGSPD 85
+ + + G+ + ++ D
Sbjct: 64 EMVFVRGDTVTLISTPNEDD 83
>gi|346975981|gb|EGY19433.1| hypothetical protein VDAG_09635 [Verticillium dahliae VdLs.17]
Length = 96
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 45/83 (54%), Gaps = 8/83 (9%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE-------YEITAEGRRI 62
P +L+ + ++V ++GD+EL G L +D + N+VL DV E + E + I
Sbjct: 14 PLDLVKLLLDEVVFVKLRGDRELKGRLHAYDSHCNIVLGDVEETIYVVDEDDDEEEAKTI 73
Query: 63 TKLDQILL-NGNNIAILVPGGSP 84
++ ++L G+++ ++ P GS
Sbjct: 74 SRKSEMLFVRGDSVVLISPHGSS 96
>gi|302855073|ref|XP_002959037.1| hypothetical protein VOLCADRAFT_108433 [Volvox carteri f.
nagariensis]
gi|300255603|gb|EFJ39898.1| hypothetical protein VOLCADRAFT_108433 [Volvox carteri f.
nagariensis]
Length = 97
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 31/49 (63%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V ++G++EL G L +D ++NM+L +V E T E
Sbjct: 13 PLDLIRLSLDERIYVKLRGERELRGRLHAYDQHLNMILGEVEETLTTVE 61
>gi|294886585|ref|XP_002771771.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
gi|239875533|gb|EER03587.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
Length = 129
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 3 HNPSQLLPSEL-IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY 53
H+ S + PS + ++R + ++ V + G +E+ G LKGFD N+VL++ EY
Sbjct: 24 HHRSSIRPSVIDLERLMHQRVTVKLTGGREVSGVLKGFDPVPNLVLDESIEY 75
>gi|398366287|ref|NP_013543.3| Lsm3p [Saccharomyces cerevisiae S288c]
gi|12230246|sp|P57743.1|LSM3_YEAST RecName: Full=U6 snRNA-associated Sm-like protein LSm3; AltName:
Full=SmX4 protein
gi|151940954|gb|EDN59336.1| snRNP protein [Saccharomyces cerevisiae YJM789]
gi|190405474|gb|EDV08741.1| snRNP protein [Saccharomyces cerevisiae RM11-1a]
gi|256271118|gb|EEU06213.1| Lsm3p [Saccharomyces cerevisiae JAY291]
gi|259148415|emb|CAY81662.1| Lsm3p [Saccharomyces cerevisiae EC1118]
gi|285813843|tpg|DAA09739.1| TPA: Lsm3p [Saccharomyces cerevisiae S288c]
gi|349580131|dbj|GAA25292.1| K7_Lsm3p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392297940|gb|EIW09039.1| Lsm3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 89
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE--YEITAE--GRRITKL 65
P +L+ + ++++ ++G + LVGTL+ FD + N+VL D E Y++ E +
Sbjct: 4 PLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRC 63
Query: 66 DQILLNGNNIAILVPGGSPD 85
+ + + G+ + ++ D
Sbjct: 64 EMVFIRGDTVTLISTPSEDD 83
>gi|297527485|ref|YP_003669509.1| hypothetical protein Shell_1522 [Staphylothermus hellenicus DSM
12710]
gi|297256401|gb|ADI32610.1| Like-Sm ribonucleoprotein core [Staphylothermus hellenicus DSM
12710]
Length = 75
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
MA ++L L G + + +KG++E+ G LK +D ++N+VL+D E R
Sbjct: 1 MAETAHKILLEHL-----GDIVLIKLKGEREVRGKLKSYDQHLNIVLDDAEEIRENGSTR 55
Query: 61 RITKLDQILLNGNNIAILVP 80
KL I++ G+ + ++ P
Sbjct: 56 ---KLGTIVIRGDTVILISP 72
>gi|294941880|ref|XP_002783286.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
gi|239895701|gb|EER15082.1| U6 snRNA-associated protein, putative [Perkinsus marinus ATCC
50983]
Length = 139
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 3 HNPSQLLPSEL-IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY 53
H+ S + PS + ++R + ++ V + G +E+ G LKGFD N+VL++ EY
Sbjct: 39 HHRSSIRPSVIDLERLMHQRVTVKLTGGREVSGVLKGFDPVPNLVLDESIEY 90
>gi|145508998|ref|XP_001440443.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124407660|emb|CAK73046.1| unnamed protein product [Paramecium tetraurelia]
Length = 87
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
M+H ++ + G + V + E +G L D +N+VLE EY E +
Sbjct: 1 MSHEKR--TSADFFKQVFGRTVNVKLHNRTEYIGVLAALDGNMNLVLEQCEEY---LEQK 55
Query: 61 RITKLDQILLNGNNI 75
I K QILL GNN+
Sbjct: 56 LINKYGQILLRGNNV 70
>gi|391337947|ref|XP_003743325.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Metaseiulus occidentalis]
Length = 103
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 42/87 (48%), Gaps = 14/87 (16%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY------------EITA 57
P +++ + +I+V M+ ++EL G L +D ++NMVL DV E E+
Sbjct: 17 PLDMVRLSLDERIYVKMRNERELRGRLHAYDQHLNMVLGDVEETVTSVEIDEETFEEVYK 76
Query: 58 EGRRITKLDQILLNGNNIAILVPGGSP 84
RR + + + G+ + ++ P P
Sbjct: 77 TSRR--SIPMLFVRGDGVILVSPPSRP 101
>gi|389746943|gb|EIM88122.1| like-Sm ribonucleo protein [Stereum hirsutum FP-91666 SS1]
Length = 77
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + K++V ++G +++ GTL+G+D+++N+V++D E A+ I +++ GN
Sbjct: 9 LKKFMDKKLFVHLQGGRKVSGTLRGYDLFLNLVIDDAIEETTPAQKHPI---GTVVIRGN 65
Query: 74 NIA 76
++
Sbjct: 66 SVT 68
>gi|403221689|dbj|BAM39821.1| U6 snRNA-associated sm-like protein Lsm3 [Theileria orientalis
strain Shintoku]
Length = 93
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEG 59
P ++I + I++ K +EL+G L FD + NMVL +VTE T +G
Sbjct: 10 PLDMIRLNLDEMIYLKCKNGRELIGRLHAFDDHCNMVLSEVTETITTVDG 59
>gi|327351953|gb|EGE80810.1| U6 snRNA binding protein [Ajellomyces dermatitidis ATCC 18188]
Length = 165
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK-LDQILLNGNNIAILV 79
++ V G +E+ GTLKG+D +N+VL+DV E EG + T+ L I+ G + ++
Sbjct: 88 EVCVKFNGGREVTGTLKGYDQLMNLVLDDVKETMRDDEGNQTTRSLGLIVARGTLLVLIS 147
Query: 80 P 80
P
Sbjct: 148 P 148
>gi|323308589|gb|EGA61833.1| Lsm1p [Saccharomyces cerevisiae FostersO]
Length = 143
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 17 CIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQ--ILLNGNN 74
+ KI+V+++ + L G L+ FD Y N++L+D E +E + + D+ ++ G N
Sbjct: 49 SVDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEENKYAEEDRGIFMIRGEN 108
Query: 75 IAIL 78
+ +L
Sbjct: 109 VVML 112
>gi|317147121|ref|XP_003189888.1| U6 snRNA-associated Sm-like protein LSm4 [Aspergillus oryzae
RIB40]
Length = 121
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQ 67
+LP L+ G + V +K + L G L D ++N++L++V + + EG R +L +
Sbjct: 1 MLPLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILKEVV--QTSPEGDRFFRLPE 58
Query: 68 ILLNGNNIAIL 78
+ + GNNI L
Sbjct: 59 VYIRGNNIKYL 69
>gi|239612791|gb|EEQ89778.1| conserved hypothetical protein [Ajellomyces dermatitidis ER-3]
Length = 164
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK-LDQILLNGNNIAILV 79
++ V G +E+ GTLKG+D +N+VL+DV E EG + T+ L I+ G + ++
Sbjct: 87 EVCVKFNGGREVTGTLKGYDQLMNLVLDDVKETMRDDEGNQTTRSLGLIVARGTLLVLIS 146
Query: 80 P 80
P
Sbjct: 147 P 147
>gi|261194282|ref|XP_002623546.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081]
gi|239588560|gb|EEQ71203.1| conserved hypothetical protein [Ajellomyces dermatitidis SLH14081]
Length = 160
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK-LDQILLNGNNIAILV 79
++ V G +E+ GTLKG+D +N+VL+DV E EG + T+ L I+ G + ++
Sbjct: 83 EVCVKFNGGREVTGTLKGYDQLMNLVLDDVKETMRDDEGNQTTRSLGLIVARGTLLVLIS 142
Query: 80 P 80
P
Sbjct: 143 P 143
>gi|145535682|ref|XP_001453574.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421296|emb|CAK86177.1| unnamed protein product [Paramecium tetraurelia]
Length = 87
Score = 38.9 bits (89), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 5/75 (6%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
M+H ++ + G + V + E +G L D +N+VLE EY E +
Sbjct: 1 MSHEKR--TSADFFKQVFGRTVNVKLHNRTEYIGVLAALDGNMNLVLEQCEEY---LEQK 55
Query: 61 RITKLDQILLNGNNI 75
I K QILL GNN+
Sbjct: 56 LINKYGQILLRGNNV 70
>gi|189203891|ref|XP_001938281.1| hypothetical protein PTRG_07949 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|330924593|ref|XP_003300696.1| hypothetical protein PTT_12029 [Pyrenophora teres f. teres 0-1]
gi|187985380|gb|EDU50868.1| hypothetical protein PTRG_07949 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|311325030|gb|EFQ91212.1| hypothetical protein PTT_12029 [Pyrenophora teres f. teres 0-1]
Length = 84
Score = 38.9 bits (89), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + ++ V + G ++++G L+G+DVY+N+VL+D E E RI +++ GN
Sbjct: 8 LKKYLEKRVLVQLNGSRKVMGILRGYDVYLNIVLDDALEEVAGGEKVRIG---MVVIRGN 64
Query: 74 NIAIL 78
+ +L
Sbjct: 65 AVVML 69
>gi|407464208|ref|YP_006775090.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
gi|407047396|gb|AFS82148.1| like-Sm ribonucleoprotein core [Candidatus Nitrosopumilus sp.
AR2]
Length = 76
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 5/71 (7%)
Query: 11 SELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILL 70
S L+ G + + ++ + + GTL+ FD+++N+ LED ++T E KL +ILL
Sbjct: 6 STLMTNSKGKVVLLRLRNTRTVQGTLRDFDIHMNLTLEDA--EDVTEEKHE--KLGKILL 61
Query: 71 NGNNI-AILVP 80
G+NI A+ +P
Sbjct: 62 RGDNILAVSLP 72
>gi|367011365|ref|XP_003680183.1| hypothetical protein TDEL_0C00830 [Torulaspora delbrueckii]
gi|359747842|emb|CCE90972.1| hypothetical protein TDEL_0C00830 [Torulaspora delbrueckii]
Length = 76
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ R + K+ + + G ++L G L+G+DV++N+VL+D E+ +G Q ++ GN
Sbjct: 7 LKRYVDKKVVLQVNGSRKLAGVLRGYDVFLNVVLDDAV--ELLKDGSNHALGSQTVVRGN 64
Query: 74 NIAIL 78
+I L
Sbjct: 65 SIVSL 69
>gi|425767040|gb|EKV05625.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Penicillium
digitatum Pd1]
gi|425780202|gb|EKV18219.1| U6 small nuclear ribonucleoprotein (Lsm3), putative [Penicillium
digitatum PHI26]
Length = 96
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 9/85 (10%)
Query: 5 PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE--YEITAEG--- 59
PS P +L+ + ++V ++GD+EL G L +D + N+VL DV E Y + +
Sbjct: 10 PSVSEPLDLVRLSLDETVFVKLRGDRELKGRLHAYDSHCNLVLGDVEETIYVVEEDENEE 69
Query: 60 ---RRITKLDQILL-NGNNIAILVP 80
R I K +++L G+++ ++ P
Sbjct: 70 ETLRTIKKQEEMLFVRGDSVVLISP 94
>gi|6322337|ref|NP_012411.1| Lsm1p [Saccharomyces cerevisiae S288c]
gi|1353009|sp|P47017.1|LSM1_YEAST RecName: Full=Sm-like protein LSm1; AltName: Full=SPB8 protein
gi|1008320|emb|CAA89419.1| unnamed protein product [Saccharomyces cerevisiae]
gi|45270504|gb|AAS56633.1| YJL124C [Saccharomyces cerevisiae]
gi|151945004|gb|EDN63259.1| conserved protein [Saccharomyces cerevisiae YJM789]
gi|190409383|gb|EDV12648.1| conserved hypothetical protein [Saccharomyces cerevisiae RM11-1a]
gi|256272133|gb|EEU07133.1| Lsm1p [Saccharomyces cerevisiae JAY291]
gi|285812780|tpg|DAA08678.1| TPA: Lsm1p [Saccharomyces cerevisiae S288c]
gi|323304441|gb|EGA58212.1| Lsm1p [Saccharomyces cerevisiae FostersB]
gi|349579079|dbj|GAA24242.1| K7_Lsm1p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392298642|gb|EIW09739.1| Lsm1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 172
Score = 38.9 bits (89), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 17 CIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQ--ILLNGNN 74
+ KI+V+++ + L G L+ FD Y N++L+D E +E + + D+ ++ G N
Sbjct: 49 SVDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEENKYAEEDRGIFMIRGEN 108
Query: 75 IAIL 78
+ +L
Sbjct: 109 VVML 112
>gi|448410087|ref|ZP_21575036.1| Sm ribonucleoprotein-like protein [Halosimplex carlsbadense
2-9-1]
gi|445672367|gb|ELZ24943.1| Sm ribonucleoprotein-like protein [Halosimplex carlsbadense
2-9-1]
Length = 61
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 29/40 (72%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLED 49
P ++++ +G ++ V +KG +E VG L G+D ++N+VLED
Sbjct: 5 PLDVLEASLGEEVTVRLKGGEEYVGDLSGYDQHMNLVLED 44
>gi|45201373|ref|NP_986943.1| AGR277Wp [Ashbya gossypii ATCC 10895]
gi|44986307|gb|AAS54767.1| AGR277Wp [Ashbya gossypii ATCC 10895]
gi|374110193|gb|AEY99098.1| FAGR277Wp [Ashbya gossypii FDAG1]
Length = 108
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 44/78 (56%), Gaps = 6/78 (7%)
Query: 10 PSELIDRCIGSKIWVI--MKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK--- 64
P LI + ++ VI ++ + +++ +K FD + NMVLE+V E EG++I+
Sbjct: 29 PMSLIQEAMTARTPVIISLRNNHKIIARVKSFDRHCNMVLENVKEIWSEREGKKISNKER 88
Query: 65 -LDQILLNGNNIAILVPG 81
+ ++ L G+++ +++
Sbjct: 89 FISKLFLRGDSVIVVLKA 106
>gi|389738918|gb|EIM80113.1| U6 snRNA-associated Sm-like protein LSm7, partial [Stereum
hirsutum FP-91666 SS1]
Length = 99
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + +I V G +E+ G LKG+D +N+VL++V E E+ L +L G
Sbjct: 19 LSKYVNERIRVKFTGGREVTGVLKGYDQLLNLVLDEVQE-EVQEPTPHTRSLGLTVLRGP 77
Query: 74 NIAILVP 80
I +L P
Sbjct: 78 TITLLSP 84
>gi|409095290|ref|ZP_11215314.1| small nuclear ribonucleoprotein [Thermococcus zilligii AN1]
Length = 76
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++I R + + V++K E G L G+D+++N+VL D + +G + + +I+
Sbjct: 5 PLDIIHRSLDRDVLVLLKKGGEFRGKLIGYDIHLNVVLADA---DYIQDGEVVKRYGKIV 61
Query: 70 LNGNNIAILVP 80
+ G+N+ + P
Sbjct: 62 VRGDNVLAISP 72
>gi|393228545|gb|EJD36188.1| U6 snRNA-associated Sm-like protein LSm7 [Auricularia delicata
TFB-10046 SS5]
Length = 116
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 20 SKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILV 79
+I V G +E+ G LKG+D +N+VL+DV E I R KL +L G + +L
Sbjct: 42 ERIRVKFTGGREVTGILKGYDQLLNLVLDDVEEV-IQEPEPRTRKLGLAVLRGPTVTLLS 100
Query: 80 P 80
P
Sbjct: 101 P 101
>gi|308322451|gb|ADO28363.1| small nuclear ribonucleoprotein e [Ictalurus furcatus]
Length = 92
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + + G + GFD Y+N+VL+D E + + R+ L
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEQINMRIEGCIIGFDEYMNLVLDDAEEVHMKTKNRK--PL 74
Query: 66 DQILLNGNNIAIL 78
+++L G+NI +L
Sbjct: 75 GRVMLKGDNITLL 87
>gi|302921652|ref|XP_003053324.1| hypothetical protein NECHADRAFT_59475 [Nectria haematococca mpVI
77-13-4]
gi|256734264|gb|EEU47611.1| hypothetical protein NECHADRAFT_59475 [Nectria haematococca mpVI
77-13-4]
Length = 133
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Query: 3 HNPSQLLPSELID--RCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
H+ + ++D + + +I V G +E+ GTLKG+D +N+VL+DV E EG
Sbjct: 36 HDRERTKKENILDLAKYMDKQITVKFNGGREVKGTLKGYDALMNLVLDDVHEVVRDDEGN 95
Query: 61 RITK-LDQILLNGNNIAILVP 80
T+ L +++ G + ++ P
Sbjct: 96 ESTRSLGLVVVRGTLLVLVSP 116
>gi|46130650|ref|XP_389105.1| hypothetical protein FG08929.1 [Gibberella zeae PH-1]
gi|408391559|gb|EKJ70933.1| hypothetical protein FPSE_08901 [Fusarium pseudograminearum CS3096]
Length = 131
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 16 RCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK-LDQILLNGNN 74
+ + +I V G +E+ GTLKG+D +N+VL+DV E EG T+ L +++ G
Sbjct: 49 KYMDKQITVKFNGGREVKGTLKGYDALMNLVLDDVHEVVRDDEGNESTRSLGLVVVRGTL 108
Query: 75 IAILVP 80
+ ++ P
Sbjct: 109 LVLVSP 114
>gi|444320755|ref|XP_004181034.1| hypothetical protein TBLA_0E04630 [Tetrapisispora blattae CBS
6284]
gi|387514077|emb|CCH61515.1| hypothetical protein TBLA_0E04630 [Tetrapisispora blattae CBS
6284]
Length = 82
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDV--TEYEI 55
P +L+ + KI+V ++G +EL G L+ FD + N+VL D T+YE+
Sbjct: 6 PLDLLKLNLDEKIYVKLRGARELSGILQAFDSHCNIVLSDAIETKYEL 53
>gi|315230063|ref|YP_004070499.1| snRNP Sm-like protein [Thermococcus barophilus MP]
gi|315183091|gb|ADT83276.1| putative snRNP Sm-like protein [Thermococcus barophilus MP]
Length = 76
Score = 38.9 bits (89), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++I R + + VI+K E G L G+D+++N+VL D ++ G K +I+
Sbjct: 5 PLDVIHRSLDKDVLVILKKGFEFRGKLIGYDIHLNVVLADA---QLIEGGEVTKKYGKIV 61
Query: 70 LNGNNIAILVP 80
+ G+N+ + P
Sbjct: 62 IRGDNVLAISP 72
>gi|395853650|ref|XP_003799317.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like
[Otolemur garnettii]
Length = 102
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+EL L +D ++NM+ DV E T E
Sbjct: 17 PLDLIRLSLNKRIYVKMRNDRELRSRLHAYDQHLNMIYGDVEETVTTIE 65
>gi|154282731|ref|XP_001542161.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150410341|gb|EDN05729.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 171
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK-LDQILLNGNNIAILV 79
++ V G +E+ GTLKG+D +N+VL+DV E EG + T+ L I+ G + ++
Sbjct: 94 EVCVKFNGGREVTGTLKGYDQLMNLVLDDVREVMRDDEGNQTTRSLGLIVARGTLLVLIS 153
Query: 80 P 80
P
Sbjct: 154 P 154
>gi|366997500|ref|XP_003678512.1| hypothetical protein NCAS_0J01950 [Naumovozyma castellii CBS
4309]
gi|342304384|emb|CCC72174.1| hypothetical protein NCAS_0J01950 [Naumovozyma castellii CBS
4309]
Length = 84
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 2/48 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE--YEI 55
P +L+ + K++V ++G + L GTL+ FD + N+VL D E YE+
Sbjct: 6 PLDLLKLNLDEKVYVKLRGARSLTGTLQAFDSHCNIVLSDAVETIYEL 53
>gi|318820229|ref|NP_001187846.1| small nuclear ribonucleoprotein e [Ictalurus punctatus]
gi|308324130|gb|ADO29200.1| small nuclear ribonucleoprotein e [Ictalurus punctatus]
Length = 92
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + + G + GFD Y+N+VL+D E + + R+ L
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEQINMRIEGCIIGFDEYMNLVLDDAEEVHMKTKNRK--PL 74
Query: 66 DQILLNGNNIAIL 78
+++L G+NI +L
Sbjct: 75 GRVMLKGDNITLL 87
>gi|71017769|ref|XP_759115.1| hypothetical protein UM02968.1 [Ustilago maydis 521]
gi|46098907|gb|EAK84140.1| hypothetical protein UM02968.1 [Ustilago maydis 521]
Length = 148
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 39/68 (57%), Gaps = 5/68 (7%)
Query: 13 LIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQ--ILL 70
L+D C+ K+ V+++ K+L+G L+ +D + N+VL+D E G R + + L+
Sbjct: 18 LVD-CVDKKMLVVLRDGKKLIGVLRSYDQFANLVLQDTVERVFV--GNRYGDVARGIFLV 74
Query: 71 NGNNIAIL 78
G N+ ++
Sbjct: 75 RGENVVLM 82
>gi|443926894|gb|ELU45444.1| LSM domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 306
Score = 38.9 bits (89), Expect = 0.40, Method: Composition-based stats.
Identities = 13/53 (24%), Positives = 36/53 (67%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLD 66
+ + + ++++ ++G +++ G L+GFD+++N+V++D E + AE I +++
Sbjct: 9 LKKFMDKRLFIHLQGGRKISGVLRGFDIFLNLVVDDAVEETVPAEKHPIGQVE 61
>gi|255941628|ref|XP_002561583.1| Pc16g12840 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211586206|emb|CAP93954.1| Pc16g12840 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 125
Score = 38.9 bits (89), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK-LDQILLNG 72
+++ + ++ V G +E+ GTLKG+D +N+VL++V E EG T+ + I+ G
Sbjct: 42 LNKYMDKEVQVKFSGGREVTGTLKGYDQLMNLVLDEVKETMRDEEGNTTTRSMGLIVARG 101
Query: 73 NNIAILVPG-GS---PDP 86
I ++ P GS P+P
Sbjct: 102 TLIVLISPADGSEEIPNP 119
>gi|331225531|ref|XP_003325436.1| U6 snRNA-associated Sm-like protein LSm3 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
gi|309304426|gb|EFP81017.1| U6 snRNA-associated Sm-like protein LSm3 [Puccinia graminis f.
sp. tritici CRL 75-36-700-3]
Length = 97
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 28/43 (65%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P +LI + ++ + ++GD+ L GTL +D ++NMVL DV E
Sbjct: 12 PFDLIRLSLSERVLIKLRGDRVLNGTLHAYDGHMNMVLSDVIE 54
>gi|409076181|gb|EKM76554.1| hypothetical protein AGABI1DRAFT_131111 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 130
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
+ + + I V G +E+VGTLKG+D +N+VL+DV E
Sbjct: 46 LAKYVNEPIRVKFMGGREVVGTLKGYDQLLNLVLDDVQE 84
>gi|402226213|gb|EJU06273.1| like-Sm ribonucleo protein [Dacryopinax sp. DJM-731 SS1]
Length = 77
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 40/63 (63%), Gaps = 3/63 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + +++V ++G + + G L+G+D+++N+V++D E T+ + I Q+++ GN
Sbjct: 9 LKKFMDKRLFVYIQGGRRVSGVLRGYDIFLNLVVDDAVEESGTSGKKHI---GQVVIRGN 65
Query: 74 NIA 76
++
Sbjct: 66 SVT 68
>gi|320592629|gb|EFX05059.1| small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 107
Score = 38.9 bits (89), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK-LDQILLNGNNIAILV 79
+I++ G +E+ G LKGFD +NMVL++ E A+G ++ L ++ G +I L
Sbjct: 4 EIYIKFNGGREVSGVLKGFDPLLNMVLDNAQEKMRNADGETKSRSLGLAVIRGTHITTLH 63
Query: 80 P 80
P
Sbjct: 64 P 64
>gi|388580102|gb|EIM20419.1| like-Sm ribonucleo protein [Wallemia sebi CBS 633.66]
Length = 89
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 30/44 (68%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY 53
P +L+ + +I V ++GD+EL+G L +D ++N++L +V E+
Sbjct: 8 PLDLVRLSLNEQIKVKLRGDRELIGVLHAYDSHMNLILGNVDEF 51
>gi|209881614|ref|XP_002142245.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209557851|gb|EEA07896.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 155
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYE-ITAEGRRITKLDQ----I 68
+ + I ++ V ++ D+ LVG L FD ++N+VL D EY I +G + ++ + I
Sbjct: 1 MQKYINYRVRVTVQDDRMLVGNLMAFDKHMNVVLSDCQEYRSIKKKGEDLKEVKRSLGFI 60
Query: 69 LLNGNNIAILVPGGSPDPE 87
+L G NI + P +
Sbjct: 61 VLRGENIVTITAEAPPKSQ 79
>gi|336253861|ref|YP_004596968.1| Like-Sm ribonucleoprotein core [Halopiger xanaduensis SH-6]
gi|335337850|gb|AEH37089.1| Like-Sm ribonucleoprotein core [Halopiger xanaduensis SH-6]
Length = 75
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 14/78 (17%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVT-------EYEITAEGRRI 62
P ++++ +G ++ V +K E VG L G+D ++N+VLED T E E E
Sbjct: 5 PLDILEASLGERVTVRLKSGDEYVGELTGYDQHMNLVLEDATIPVGGTVEEEEPVE---- 60
Query: 63 TKLDQILLNGNNIAILVP 80
D ++ G+N+ + P
Sbjct: 61 ---DTTIIRGDNVVSITP 75
>gi|384491006|gb|EIE82202.1| hypothetical protein RO3G_06907 [Rhizopus delemar RA 99-880]
Length = 102
Score = 38.9 bits (89), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 29/43 (67%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P +L+ + +++V ++GD+EL G L +D ++NMVL +V E
Sbjct: 18 PLDLVRLSLDERVYVKLRGDRELTGILHAYDGHLNMVLGEVEE 60
>gi|397505808|ref|XP_003823438.1| PREDICTED: putative small nuclear ribonucleoprotein polypeptide
E-like protein 1-like [Pan paniscus]
Length = 92
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + ++ G + GFD Y+N+VL+D E + R+ +L
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEPVNMQIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 74
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI +L
Sbjct: 75 GRIMLKGDNINLL 87
>gi|448118085|ref|XP_004203416.1| Piso0_001025 [Millerozyma farinosa CBS 7064]
gi|448120526|ref|XP_004203999.1| Piso0_001025 [Millerozyma farinosa CBS 7064]
gi|359384284|emb|CCE78988.1| Piso0_001025 [Millerozyma farinosa CBS 7064]
gi|359384867|emb|CCE78402.1| Piso0_001025 [Millerozyma farinosa CBS 7064]
Length = 90
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 22 IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78
IW+ + + G ++GFD ++N+V++D EI+ E L +ILL G+NI ++
Sbjct: 31 IWLFEQTQSRIQGKIRGFDEFMNIVIDDAK--EISTEDGSSEALGRILLKGDNITLI 85
>gi|296411223|ref|XP_002835333.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295629111|emb|CAZ79490.1| unnamed protein product [Tuber melanosporum]
Length = 93
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 39/62 (62%), Gaps = 6/62 (9%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITA----EGRRITKLDQILLNGNNIA 76
+IW+ + + G ++GFD ++N+V++D E ++ E RR +L QILL G+N++
Sbjct: 31 QIWLYEQLAIRIEGKIRGFDEFMNLVIDDAVEVKLKTKDEEESRR--ELGQILLKGDNVS 88
Query: 77 IL 78
++
Sbjct: 89 LI 90
>gi|146093720|ref|XP_001466971.1| putative small nuclear ribonucleoprotein polypeptide e
[Leishmania infantum JPCM5]
gi|134071335|emb|CAM70021.1| putative small nuclear ribonucleoprotein polypeptide e
[Leishmania infantum JPCM5]
Length = 86
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 2 AHNPSQLLPSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITA 57
AH P+ ++ R + +W++ L G L G+D ++N+VL D TE +
Sbjct: 3 AHTRQMENPTGVVHRFMQDHQRVCVWLVHDPQMRLEGNLLGYDEFMNVVLGDTTETNL-- 60
Query: 58 EGRRITKLDQILLNGNNIAILVPGG 82
+ +L +ILL +N+ ++ P G
Sbjct: 61 RNNKSYRLGKILLRSDNVGVIYPIG 85
>gi|17556060|ref|NP_499620.1| Protein SNR-6 [Caenorhabditis elegans]
gi|29428070|sp|Q9XTU6.1|RUXE_CAEEL RecName: Full=Probable small nuclear ribonucleoprotein E;
Short=snRNP-E; AltName: Full=Sm protein E; Short=Sm-E;
Short=SmE
gi|3979991|emb|CAB11551.1| Protein SNR-6 [Caenorhabditis elegans]
Length = 90
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 4 NPSQLLPSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEG 59
N + P LI R + ++ IW+ L G + GFD ++N+V ++ E + +G
Sbjct: 7 NKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEVNMKTKG 66
Query: 60 RRITKLDQILLNGNNIAIL 78
R K+ +ILL G+NI ++
Sbjct: 67 R--NKIGRILLKGDNITLI 83
>gi|348569444|ref|XP_003470508.1| PREDICTED: small nuclear ribonucleoprotein E-like [Cavia
porcellus]
Length = 92
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGS----KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + + ++W+ + + + G + GFD Y+N+VL+D E + R+ +L
Sbjct: 17 PINLIFRYLQNSSRIQVWLYEQVNMHIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 74
Query: 66 DQILLNGNNIAIL 78
I+L G+NI +L
Sbjct: 75 GWIMLKGDNITLL 87
>gi|209882013|ref|XP_002142444.1| LSM domain-containing protein [Cryptosporidium muris RN66]
gi|209558050|gb|EEA08095.1| LSM domain-containing protein [Cryptosporidium muris RN66]
Length = 91
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P I R SK IW+ + L G ++GFD Y+N+VL+DVTE + +
Sbjct: 14 PINQIFRLFTSKQRVQIWLYDHPELSLEGKIQGFDEYMNIVLDDVTEVYTKKDEVSRRDI 73
Query: 66 DQILLNGNNIAIL 78
+++L G NI+++
Sbjct: 74 GRLMLRGENISLI 86
>gi|226468890|emb|CAX76473.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226468902|emb|CAX76479.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
Length = 198
Score = 38.9 bits (89), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY-EITAEGRRITKLDQ----- 67
I + + +I M+ ++LVGT K FD ++N++L D E+ ++ ++ + K Q
Sbjct: 9 ISQHVNYRIRCTMQDGRQLVGTFKAFDRHMNIILCDCDEFRQVKSKTAKQDKDRQEKRSL 68
Query: 68 --ILLNGNNIAILVPGGSPDPE 87
+LL G ++ + G P PE
Sbjct: 69 GLVLLRGEHVVTMNVDGPPPPE 90
>gi|451850030|gb|EMD63333.1| hypothetical protein COCSADRAFT_38193 [Cochliobolus sativus
ND90Pr]
gi|452001852|gb|EMD94311.1| hypothetical protein COCHEDRAFT_1170230 [Cochliobolus
heterostrophus C5]
Length = 84
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + ++ V + G ++++G L+G+DVY+N+VL++ E + E RI +++ GN
Sbjct: 8 LKKYLEKRVLVQLNGSRKVMGILRGYDVYLNIVLDEALEEKAGGEKVRIG---MVVIRGN 64
Query: 74 NIAIL 78
+ +L
Sbjct: 65 AVVML 69
>gi|238496529|ref|XP_002379500.1| U6 snRNA-associated Sm-like protein LSM4, putative [Aspergillus
flavus NRRL3357]
gi|220694380|gb|EED50724.1| U6 snRNA-associated Sm-like protein LSM4, putative [Aspergillus
flavus NRRL3357]
gi|391868822|gb|EIT78031.1| small nuclear ribonucleoprotein [Aspergillus oryzae 3.042]
Length = 121
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQ 67
+LP L+ G + V +K + L G L D ++N++L++V + + EG R +L +
Sbjct: 1 MLPLGLLTAAQGHPMLVELKNGETLNGHLANCDNWMNLILKEVV--QTSPEGDRFFRLPE 58
Query: 68 ILLNGNNIAIL 78
+ + GNNI L
Sbjct: 59 VYIRGNNIKYL 69
>gi|193704556|ref|XP_001950622.1| PREDICTED: small nuclear ribonucleoprotein-associated protein
B-like [Acyrthosiphon pisum]
Length = 209
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 18 IGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYE----------ITAEGRRITK-LD 66
I ++ VI++ + +GT K FD ++N++L D E+ I AE R + L
Sbjct: 13 INYRVRVILQDSRMFIGTFKAFDKHMNLILADCEEFRRLKSKAKVPTIPAEPREEKRVLG 72
Query: 67 QILLNGNNI 75
+LL G NI
Sbjct: 73 FVLLRGQNI 81
>gi|348673388|gb|EGZ13207.1| hypothetical protein PHYSODRAFT_334991 [Phytophthora sojae]
Length = 106
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 11/73 (15%)
Query: 16 RCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVT--------EYEITAEGRRITKLDQ 67
+ I ++ V G +E+ GTLKG+D VN+VL+D EY IT + R K+
Sbjct: 21 KYIDQEVRVKFHGGREVTGTLKGYDQLVNLVLDDCVEFLRDPNDEYRITDDTR---KVGL 77
Query: 68 ILLNGNNIAILVP 80
++ G ++ ++ P
Sbjct: 78 VVCRGTSVMLVSP 90
>gi|313239283|emb|CBY14233.1| unnamed protein product [Oikopleura dioica]
gi|313245445|emb|CBY40176.1| unnamed protein product [Oikopleura dioica]
Length = 90
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 9 LPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQI 68
L + I +IW+ + L G + GFD Y+N+VL+DV E + ++ + +I
Sbjct: 18 LVFRFFQKKIRVQIWLYDVINVRLEGIIVGFDEYMNLVLDDVEEMHVKTHFKK--NVGKI 75
Query: 69 LLNGNNIAIL 78
LL G+NI ++
Sbjct: 76 LLKGDNITLI 85
>gi|56759110|gb|AAW27695.1| SJCHGC06652 protein [Schistosoma japonicum]
gi|226468894|emb|CAX76475.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226468896|emb|CAX76476.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226468898|emb|CAX76477.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226468900|emb|CAX76478.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226468904|emb|CAX76480.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226468906|emb|CAX76481.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
gi|226472872|emb|CAX71122.1| Small nuclear ribonucleoprotein-associated protein B [Schistosoma
japonicum]
Length = 198
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY-EITAEGRRITKLDQ----- 67
I + + +I M+ ++LVGT K FD ++N++L D E+ ++ ++ + K Q
Sbjct: 9 ISQHVNYRIRCTMQDGRQLVGTFKAFDRHMNIILCDCDEFRQVKSKTAKQDKDRQEKRAL 68
Query: 68 --ILLNGNNIAILVPGGSPDPE 87
+LL G ++ + G P PE
Sbjct: 69 GLVLLRGEHVVTMNVDGPPPPE 90
>gi|189053316|dbj|BAG35122.1| unnamed protein product [Homo sapiens]
Length = 102
Score = 38.9 bits (89), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P + I + +I+V M+ D+EL G L +D ++NM+L DV E T E
Sbjct: 17 PLDPIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
>gi|156544005|ref|XP_001607844.1| PREDICTED: U6 snRNA-associated Sm-like protein LSm3-like [Nasonia
vitripennis]
Length = 103
Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ ++EL G L +D ++NMVL +V E T E
Sbjct: 16 PLDLIRLSLDERIYVKMRNERELRGRLHAYDQHLNMVLGEVEETVTTIE 64
>gi|426193423|gb|EKV43356.1| hypothetical protein AGABI2DRAFT_121482 [Agaricus bisporus var.
bisporus H97]
Length = 127
Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
+ + + I V G +E+VGTLKG+D +N+VL+DV E
Sbjct: 46 LAKYVNEPIRVKFMGGREVVGTLKGYDQLLNLVLDDVQE 84
>gi|24582631|ref|NP_609162.1| small ribonucleoprotein particle protein SmE [Drosophila
melanogaster]
gi|29428063|sp|Q9VLV5.1|RUXE_DROME RecName: Full=Probable small nuclear ribonucleoprotein E;
Short=snRNP-E; AltName: Full=Sm protein E; Short=Sm-E;
Short=SmE
gi|7297315|gb|AAF52576.1| small ribonucleoprotein particle protein SmE [Drosophila
melanogaster]
gi|28317182|gb|AAO39600.1| GM19936p [Drosophila melanogaster]
gi|220947662|gb|ACL86374.1| CG18591-PA [synthetic construct]
gi|220956962|gb|ACL91024.1| CG18591-PA [synthetic construct]
Length = 94
Score = 38.9 bits (89), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + G + GFD Y+N+VL+D E + RR L
Sbjct: 16 PINLIFRYLQNRSRVQVWLYENISLRIEGHIVGFDEYMNLVLDDAEEVYVKTRQRR--NL 73
Query: 66 DQILLNGNNIAILVPGGSP 84
+I+L G+NI L+ SP
Sbjct: 74 GRIMLKGDNIT-LIQNVSP 91
>gi|430813244|emb|CCJ29390.1| unnamed protein product [Pneumocystis jirovecii]
Length = 76
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 42/65 (64%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + K+++++ G ++++G L+G+DV++N+VL++ E EG + +++ GN
Sbjct: 9 LKKYMDKKVFLMLNGSRKVIGVLRGYDVFLNIVLDEAFE---EKEGGEKCAIGTVVIRGN 65
Query: 74 NIAIL 78
++ ++
Sbjct: 66 SVVMV 70
>gi|407919352|gb|EKG12602.1| hypothetical protein MPH_10268 [Macrophomina phaseolina MS6]
Length = 81
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 22 IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK-LDQILLNGNNIAILVP 80
I V G +E+ GTLKG+D +N+VL+DV E EG T+ L I+ G + ++ P
Sbjct: 5 ISVKFNGGREVTGTLKGYDQLMNLVLDDVKEVMRDDEGNETTRSLGLIVARGTLLVLISP 64
>gi|295667135|ref|XP_002794117.1| hypothetical protein PAAG_03710 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226286223|gb|EEH41789.1| hypothetical protein PAAG_03710 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 155
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 42/76 (55%), Gaps = 3/76 (3%)
Query: 5 PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEIT--AEGRRI 62
P + L R + S IW+ + + G ++GFD ++N+V++D E + E +
Sbjct: 77 PIHFIFKLLQQRSVVS-IWLYEQLAIRIEGKIRGFDEFMNLVVDDAVEVRLATKTEEEKK 135
Query: 63 TKLDQILLNGNNIAIL 78
+L QILL G+N++++
Sbjct: 136 RQLGQILLKGDNVSLI 151
>gi|443693014|gb|ELT94478.1| hypothetical protein CAPTEDRAFT_158302 [Capitella teleta]
gi|443707581|gb|ELU03095.1| hypothetical protein CAPTEDRAFT_101766 [Capitella teleta]
Length = 92
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + + G + GFD Y+N+VL++ E I + R+ L
Sbjct: 16 PINLIFRYLQNRSRIQVWLYEQCNMRIEGCIIGFDEYMNLVLDEAEEVNIKTKNRK--NL 73
Query: 66 DQILLNGNNIAIL 78
+IL+ G+NI ++
Sbjct: 74 GRILMKGDNITLI 86
>gi|401838766|gb|EJT42227.1| LSM3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 89
Score = 38.5 bits (88), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE--YEITAE--GRRITKL 65
P +L+ + ++++ ++G + LVGTL+ FD + N+VL D E Y++ E +
Sbjct: 4 PLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRC 63
Query: 66 DQILLNGNNIAILVPGGSPD 85
+ + + G+ + ++ D
Sbjct: 64 EMVFVRGDTVTLISTPNEDD 83
>gi|148298654|ref|NP_001091757.1| small nuclear ribonucleoprotein polypeptide [Bombyx mori]
gi|87248407|gb|ABD36256.1| small nuclear ribonucleoprotein polypeptide [Bombyx mori]
Length = 187
Score = 38.5 bits (88), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 7/73 (9%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYE-------ITAEGRRITKLD 66
+ + I ++ VI++ + +GT K FD ++N++L D E+ TA+ L
Sbjct: 9 MQQHINYRVRVILQDSRTFIGTFKAFDKHMNLILGDCEEFRKIKSKNSKTADREEKRTLG 68
Query: 67 QILLNGNNIAILV 79
+LL G NI L
Sbjct: 69 FVLLRGENIVSLT 81
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.317 0.140 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,489,549,762
Number of Sequences: 23463169
Number of extensions: 50831813
Number of successful extensions: 120592
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1165
Number of HSP's successfully gapped in prelim test: 1012
Number of HSP's that attempted gapping in prelim test: 119069
Number of HSP's gapped (non-prelim): 2179
length of query: 87
length of database: 8,064,228,071
effective HSP length: 57
effective length of query: 30
effective length of database: 6,726,827,438
effective search space: 201804823140
effective search space used: 201804823140
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 69 (31.2 bits)