BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041342
(87 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5R628|LSM5_PONAB U6 snRNA-associated Sm-like protein LSm5 OS=Pongo abelii GN=LSM5
PE=3 SV=3
Length = 91
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 63/79 (79%), Positives = 72/79 (91%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67
Query: 64 KLDQILLNGNNIAILVPGG 82
KLDQILLNGNNI +LVPGG
Sbjct: 68 KLDQILLNGNNITMLVPGG 86
>sp|P62322|LSM5_MOUSE U6 snRNA-associated Sm-like protein LSm5 OS=Mus musculus GN=Lsm5
PE=3 SV=2
Length = 91
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 63/79 (79%), Positives = 72/79 (91%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67
Query: 64 KLDQILLNGNNIAILVPGG 82
KLDQILLNGNNI +LVPGG
Sbjct: 68 KLDQILLNGNNITMLVPGG 86
>sp|Q9Y4Y9|LSM5_HUMAN U6 snRNA-associated Sm-like protein LSm5 OS=Homo sapiens GN=LSM5
PE=1 SV=3
Length = 91
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 63/79 (79%), Positives = 72/79 (91%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67
Query: 64 KLDQILLNGNNIAILVPGG 82
KLDQILLNGNNI +LVPGG
Sbjct: 68 KLDQILLNGNNITMLVPGG 86
>sp|Q2HJH0|LSM5_BOVIN U6 snRNA-associated Sm-like protein LSm5 OS=Bos taurus GN=LSM5
PE=3 SV=3
Length = 91
Score = 133 bits (335), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 63/79 (79%), Positives = 72/79 (91%)
Query: 4 NPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT 63
NPSQLLP EL+D+CIGS+I ++MK DKE+VGTL GFD +VNMVLEDVTE+EIT EGRRIT
Sbjct: 8 NPSQLLPLELVDKCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRIT 67
Query: 64 KLDQILLNGNNIAILVPGG 82
KLDQILLNGNNI +LVPGG
Sbjct: 68 KLDQILLNGNNITMLVPGG 86
>sp|Q55EX5|LSM5_DICDI Probable U6 snRNA-associated Sm-like protein LSm5
OS=Dictyostelium discoideum GN=lsm5 PE=3 SV=1
Length = 97
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 53/77 (68%), Positives = 63/77 (81%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
SQLLP ELI++CIGS+IW+ MK DKE VGTL GFD YVN+ L+DVTEYE T EG + KL
Sbjct: 14 SQLLPLELIEKCIGSRIWIAMKNDKEFVGTLLGFDAYVNIFLKDVTEYEYTPEGLKTVKL 73
Query: 66 DQILLNGNNIAILVPGG 82
D ILLNGN++ +LVPGG
Sbjct: 74 DNILLNGNHVCLLVPGG 90
>sp|O42978|LSM5_SCHPO U6 snRNA-associated Sm-like protein LSm5 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm5 PE=1 SV=2
Length = 80
Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/78 (57%), Positives = 59/78 (75%), Gaps = 2/78 (2%)
Query: 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQ 67
+LP ELID+CIGS +WVIMK ++E GTL GFD YVN+VL+DVTEY+ T G K +
Sbjct: 5 ILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYD-TVTGVT-EKHSE 62
Query: 68 ILLNGNNIAILVPGGSPD 85
+LLNGN + +L+PGG P+
Sbjct: 63 MLLNGNGMCMLIPGGKPE 80
>sp|P40089|LSM5_YEAST U6 snRNA-associated Sm-like protein LSm5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM5 PE=1
SV=1
Length = 93
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 39/85 (45%), Positives = 57/85 (67%), Gaps = 5/85 (5%)
Query: 7 QLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR-RITKL 65
++LP E+ID+ I K+ ++++ ++E GTL GFD +VN++LED E+ I E R K+
Sbjct: 5 EILPLEVIDKTINQKVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLIDPEDESRNEKV 64
Query: 66 DQ----ILLNGNNIAILVPGGSPDP 86
Q +LL+GNNIAILVPGG P
Sbjct: 65 MQHHGRMLLSGNNIAILVPGGKKTP 89
>sp|P57670|RUXX_THEAC Putative snRNP Sm-like protein OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta1240 PE=3 SV=1
Length = 83
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 49/80 (61%), Gaps = 3/80 (3%)
Query: 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGR 60
M P+ + P +++ + + + +KG++E G L+G+DVY+N+VL++ +E I E +
Sbjct: 1 MPKTPANVKPMDVLKSALSRNVLIDVKGNREYSGILEGYDVYMNIVLQNASEI-INGENK 59
Query: 61 RITKLDQILLNGNNIAILVP 80
+ D++L+ G+N+ + P
Sbjct: 60 GV--YDRVLVRGDNVIFVSP 77
>sp|O26745|RUXX_METTH Putative snRNP Sm-like protein OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_649 PE=1 SV=1
Length = 81
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P + + + S + + +KGD+E G LK FD+++N+VL D E E +G +L +L
Sbjct: 14 PLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELE---DGEVTRRLGTVL 70
Query: 70 LNGNNIAILVP 80
+ G+NI + P
Sbjct: 71 IRGDNIVYISP 81
>sp|Q8PZZ9|RUXX_METMA Putative snRNP Sm-like protein OS=Methanosarcina mazei (strain
ATCC BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM
88) GN=MM_0339 PE=3 SV=1
Length = 72
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++++ + + + V +KG +E G LKG+D+++N+VL++ E EG ++K ++
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELR---EGEVVSKFSSVV 61
Query: 70 LNGNNIAILVP 80
+ G+N+ + P
Sbjct: 62 IRGDNVVYVSP 72
>sp|Q465S1|RUXX_METBF Putative snRNP Sm-like protein OS=Methanosarcina barkeri (strain
Fusaro / DSM 804) GN=Mbar_A3500 PE=3 SV=1
Length = 72
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++++ + + + V +KG +E G LKG+D+++N+VL++ E EG ++K ++
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELR---EGEVVSKFGSVV 61
Query: 70 LNGNNIAILVP 80
+ G+N+ + P
Sbjct: 62 IRGDNVVYVSP 72
>sp|Q97BU5|RUXX_THEVO Putative snRNP Sm-like protein OS=Thermoplasma volcanium (strain
ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0360 PE=3 SV=2
Length = 83
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P +++ + + + +KG++E G L+G+DVY+N+VL++ +E I E + + D+IL
Sbjct: 10 PMDVLKNALSRNVLIDVKGNREYSGILEGYDVYMNVVLQNASEI-INGENKGV--FDRIL 66
Query: 70 LNGNNIAILVP 80
+ G+N+ + P
Sbjct: 67 VRGDNVIFVSP 77
>sp|O29386|RUXX_ARCFU Putative snRNP Sm-like protein OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=AF_0875 PE=1 SV=1
Length = 77
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++++R + S + V +KG +E GTL G+D+++N+VL D E + G + K+ ++
Sbjct: 5 PLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQ---NGEVVRKVGSVV 61
Query: 70 LNGNNIAILVP 80
+ G+ + + P
Sbjct: 62 IRGDTVVFVSP 72
>sp|Q8TL47|RUXX_METAC Putative snRNP Sm-like protein OS=Methanosarcina acetivorans
(strain ATCC 35395 / DSM 2834 / JCM 12185 / C2A)
GN=MA_3195 PE=3 SV=1
Length = 72
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++++ + + + V +KG +E G LKG+D+++N+VL++ E +G ++K ++
Sbjct: 5 PLDILNNALDTPVIVRLKGAREFRGELKGYDIHMNLVLDNAEELR---DGEVVSKFSSVV 61
Query: 70 LNGNNIAILVP 80
+ G+N+ + P
Sbjct: 62 IRGDNVVYVSP 72
>sp|Q12U30|RUXX_METBU Putative snRNP Sm-like protein OS=Methanococcoides burtonii
(strain DSM 6242) GN=Mbur_2181 PE=3 SV=1
Length = 72
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++++ + + + V +KG +E G L+G+DV++N+VL++ E + +G + K+ ++
Sbjct: 5 PLDILNDALNTSVIVRLKGAREFRGVLQGYDVHMNLVLDEAEELK---DGEIVRKIGGVV 61
Query: 70 LNGNNIAILVP 80
+ G+N+ + P
Sbjct: 62 IRGDNVVYVSP 72
>sp|O74016|RUXX_PYRHO Putative snRNP Sm-like protein OS=Pyrococcus horikoshii (strain
ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 /
OT-3) GN=PH1518.2 PE=3 SV=1
Length = 75
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++I R + + VI+K E G L G+D+++N+VL D E+ +G + K +I+
Sbjct: 5 PLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADA---EMVQDGEVVKKYGKIV 61
Query: 70 LNGNNIAILVP 80
+ G+N+ + P
Sbjct: 62 IRGDNVLAISP 72
>sp|Q5JIE0|RUXX_PYRKO Putative snRNP Sm-like protein OS=Pyrococcus kodakaraensis
(strain ATCC BAA-918 / JCM 12380 / KOD1) GN=TK0976 PE=3
SV=1
Length = 76
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++I + + + V++K E G L G+D+++N+VL D E+ +G + K +I+
Sbjct: 5 PLDVIHKSLDKDVLVLLKRGNEFRGKLIGYDIHLNVVLADA---ELIQDGEVVKKYGKIV 61
Query: 70 LNGNNIAILVP 80
+ G+N+ L P
Sbjct: 62 IRGDNVLALSP 72
>sp|Q9V0Y8|RUXX_PYRAB Putative snRNP Sm-like protein OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=PYRAB06500 PE=1 SV=1
Length = 75
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++I R + + VI+K E G L G+D+++N+VL D E+ +G + + +I+
Sbjct: 5 PLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADA---EMIQDGEVVKRYGKIV 61
Query: 70 LNGNNIAILVP 80
+ G+N+ + P
Sbjct: 62 IRGDNVLAISP 72
>sp|Q0W8R9|RUXX_UNCMA Putative snRNP Sm-like protein OS=Uncultured methanogenic
archaeon RC-I GN=UNCMA_29510 PE=3 SV=1
Length = 72
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++++ + S + V +KG +E G L+G+D+++N+VL++ E + R KL I+
Sbjct: 5 PLDVLNEALNSPVIVRLKGGREFRGELQGYDMHMNLVLDNAEELKENEASR---KLGTII 61
Query: 70 LNGNNIAILVP 80
+ G+ + + P
Sbjct: 62 VRGDTVVYVSP 72
>sp|P62311|LSM3_MOUSE U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus GN=Lsm3
PE=3 SV=2
Length = 102
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+EL G L +D ++NM+L DV E T E
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
>sp|P62310|LSM3_HUMAN U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens GN=LSM3
PE=1 SV=2
Length = 102
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+EL G L +D ++NM+L DV E T E
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
>sp|Q32PE9|LSM3_BOVIN U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus GN=LSM3
PE=3 SV=3
Length = 102
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE 58
P +LI + +I+V M+ D+EL G L +D ++NM+L DV E T E
Sbjct: 17 PLDLIRLSLDERIYVKMRNDRELRGRLHAYDQHLNMILGDVEETVTTIE 65
>sp|Q1ZXK3|LSM3_DICDI Probable U6 snRNA-associated Sm-like protein LSm3
OS=Dictyostelium discoideum GN=lsm3 PE=3 SV=1
Length = 97
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P +LI + +I+V M+ D+EL G L +D ++NM+L DV E
Sbjct: 12 PLDLIRLSLDERIFVKMRQDRELRGKLHAYDQHLNMILSDVEE 54
>sp|Q9USZ3|RUXE_SCHPO Small nuclear ribonucleoprotein E OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=sme1 PE=1 SV=1
Length = 84
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 12 ELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLN 71
+L+ + IW+ + D L G ++GFD ++N+VL+D + + R +L +ILL
Sbjct: 18 KLLQQHTPVSIWLFEQTDIRLQGQIRGFDEFMNIVLDDAVQVDAKNNKR---ELGRILLK 74
Query: 72 GNNIAIL 78
G+NI ++
Sbjct: 75 GDNITLI 81
>sp|A1XQR9|RUXE_PIG Small nuclear ribonucleoprotein E OS=Sus scrofa GN=SNRPE PE=3
SV=1
Length = 92
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + + G + GFD Y+N+VL+D E + R+ +L
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 74
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI +L
Sbjct: 75 GRIMLKGDNITLL 87
>sp|Q7ZUG0|RUXE_DANRE Small nuclear ribonucleoprotein E OS=Danio rerio GN=snrpe PE=3
SV=1
Length = 92
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + + G + GFD Y+N+VL+D E + + R+ L
Sbjct: 17 PINLIFRYLQNRSRISVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEVHMKTKNRK--PL 74
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI +L
Sbjct: 75 GRIMLKGDNITLL 87
>sp|P62305|RUXE_MOUSE Small nuclear ribonucleoprotein E OS=Mus musculus GN=Snrpe PE=2
SV=1
Length = 92
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + + G + GFD Y+N+VL+D E + R+ +L
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 74
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI +L
Sbjct: 75 GRIMLKGDNITLL 87
>sp|P62304|RUXE_HUMAN Small nuclear ribonucleoprotein E OS=Homo sapiens GN=SNRPE PE=1
SV=1
Length = 92
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + + G + GFD Y+N+VL+D E + R+ +L
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 74
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI +L
Sbjct: 75 GRIMLKGDNITLL 87
>sp|P62303|RUXE_CHICK Small nuclear ribonucleoprotein E OS=Gallus gallus GN=SNRPE PE=3
SV=1
Length = 92
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + + G + GFD Y+N+VL+D E + R+ +L
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 74
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI +L
Sbjct: 75 GRIMLKGDNITLL 87
>sp|A4FUI2|RUXE_BOVIN Small nuclear ribonucleoprotein E OS=Bos taurus GN=SNRPE PE=3
SV=1
Length = 92
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + + + G + GFD Y+N+VL+D E + R+ +L
Sbjct: 17 PINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRK--QL 74
Query: 66 DQILLNGNNIAIL 78
+I+L G+NI +L
Sbjct: 75 GRIMLKGDNITLL 87
>sp|O74499|LSM7_SCHPO U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm7 PE=1 SV=1
Length = 113
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRIT----KLDQIL 69
+ R +I G +++ G LKGFD +N+VL+DV E E ++T KL ++
Sbjct: 28 LSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVV 87
Query: 70 LNGNNIAILVP 80
+ G + ++ P
Sbjct: 88 VRGTTLVLIAP 98
>sp|B6YUU5|RUXX_THEON Putative snRNP Sm-like protein OS=Thermococcus onnurineus (strain
NA1) GN=TON_0644 PE=3 SV=1
Length = 78
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++I R + + VI+K E G L G+D+++N+VL E+ +G + K +I+
Sbjct: 5 PLDVIHRSLDKDVLVILKKGFEFRGKLIGYDIHLNIVLAGA---EMIQDGEVVKKYGKIV 61
Query: 70 LNGNNIAILVP 80
+ G+N+ + P
Sbjct: 62 IRGDNVLAISP 72
>sp|Q8U0P4|RUXX_PYRFU Putative snRNP Sm-like protein OS=Pyrococcus furiosus (strain
ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF1542 PE=3
SV=1
Length = 76
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 41/71 (57%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++I + + + VI+K E G L G+D+++N+VL + E+ +G + K +I+
Sbjct: 5 PLDVIHKSLDKDVLVILKKGFEFRGKLIGYDIHLNVVLANA---ELLQDGEVVKKYGKIV 61
Query: 70 LNGNNIAILVP 80
+ G+N+ + P
Sbjct: 62 IRGDNVLAISP 72
>sp|O74966|RUXG_SCHPO Small nuclear ribonucleoprotein G OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=smg1 PE=1 SV=1
Length = 77
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 41/65 (63%), Gaps = 3/65 (4%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGN 73
+ + + +++V + G +++ G L+G+D+++N+VLED E ++ E K+ + + GN
Sbjct: 9 LKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEK---VKIGSVAIRGN 65
Query: 74 NIAIL 78
++ ++
Sbjct: 66 SVIMI 70
>sp|P57743|LSM3_YEAST U6 snRNA-associated Sm-like protein LSm3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM3 PE=1
SV=1
Length = 89
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE--YEITAE--GRRITKL 65
P +L+ + ++++ ++G + LVGTL+ FD + N+VL D E Y++ E +
Sbjct: 4 PLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRC 63
Query: 66 DQILLNGNNIAILVPGGSPD 85
+ + + G+ + ++ D
Sbjct: 64 EMVFIRGDTVTLISTPSEDD 83
>sp|P47017|LSM1_YEAST Sm-like protein LSm1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=LSM1 PE=1 SV=1
Length = 172
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 17 CIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQ--ILLNGNN 74
+ KI+V+++ + L G L+ FD Y N++L+D E +E + + D+ ++ G N
Sbjct: 49 SVDRKIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEENKYAEEDRGIFMIRGEN 108
Query: 75 IAIL 78
+ +L
Sbjct: 109 VVML 112
>sp|Q9XTU6|RUXE_CAEEL Probable small nuclear ribonucleoprotein E OS=Caenorhabditis
elegans GN=snr-6 PE=3 SV=1
Length = 90
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 6/79 (7%)
Query: 4 NPSQLLPSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEG 59
N + P LI R + ++ IW+ L G + GFD ++N+V ++ E + +G
Sbjct: 7 NKVMVQPVNLIFRYLQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEVNMKTKG 66
Query: 60 RRITKLDQILLNGNNIAIL 78
R K+ +ILL G+NI ++
Sbjct: 67 R--NKIGRILLKGDNITLI 83
>sp|Q9VLV5|RUXE_DROME Probable small nuclear ribonucleoprotein E OS=Drosophila
melanogaster GN=SmE PE=3 SV=1
Length = 94
Score = 38.9 bits (89), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ +W+ + G + GFD Y+N+VL+D E + RR L
Sbjct: 16 PINLIFRYLQNRSRVQVWLYENISLRIEGHIVGFDEYMNLVLDDAEEVYVKTRQRR--NL 73
Query: 66 DQILLNGNNIAILVPGGSP 84
+I+L G+NI L+ SP
Sbjct: 74 GRIMLKGDNIT-LIQNVSP 91
>sp|A8XDT0|RUXE_CAEBR Probable small nuclear ribonucleoprotein E OS=Caenorhabditis
briggsae GN=snr-6 PE=3 SV=1
Length = 90
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 6/78 (7%)
Query: 10 PSELIDRCIGSK----IWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
P LI R + ++ IW+ L G + GFD ++N+V ++ E + +GR K+
Sbjct: 13 PVNLIFRYLQNRTRVQIWLYEDVTHRLEGYIIGFDEFMNVVFDEAEEVNMKTKGR--NKI 70
Query: 66 DQILLNGNNIAILVPGGS 83
+ILL G+NI ++
Sbjct: 71 GRILLKGDNITLIHAAAQ 88
>sp|Q9N4G9|RUXG_CAEEL Probable small nuclear ribonucleoprotein G OS=Caenorhabditis
elegans GN=snr-7 PE=3 SV=1
Length = 77
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 45/75 (60%), Gaps = 4/75 (5%)
Query: 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKL 65
S+ P EL + + ++ + + G++ + G L+GFD ++NMV+++ EY+ +G + L
Sbjct: 2 SKTHPPEL-KKYMDKEMDLKLNGNRRVSGILRGFDPFMNMVIDEAVEYQ--KDGGSVN-L 57
Query: 66 DQILLNGNNIAILVP 80
++ GN++ I+ P
Sbjct: 58 GMTVIRGNSVVIMEP 72
>sp|Q9Y7M4|LSM3_SCHPO Probable U6 snRNA-associated Sm-like protein LSm3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=lsm3 PE=1 SV=2
Length = 93
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTE 52
P +L+ + ++V ++GD+EL G L +D ++NMVL D E
Sbjct: 10 PLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEE 52
>sp|P53905|LSM7_YEAST U6 snRNA-associated Sm-like protein LSm7 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM7 PE=1
SV=2
Length = 115
Score = 37.0 bits (84), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 24/34 (70%)
Query: 20 SKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY 53
SKI V + G K ++G LKG+D +N+VL+D EY
Sbjct: 36 SKIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEY 69
>sp|Q54HF6|LSM7_DICDI Probable U6 snRNA-associated Sm-like protein LSm7
OS=Dictyostelium discoideum GN=lsm7 PE=3 SV=1
Length = 97
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITK-----LDQI 68
+ + +G +I V G +E+ G LKG+D VN+ L+ E+ AE IT L +
Sbjct: 15 LQKFLGKEICVKFTGGREVQGILKGYDQLVNITLDQTQEFIRDAEDPLITTDEKRFLGLV 74
Query: 69 LLNGNNIAILVPGGSPDP 86
+ G+++ ++ P +P
Sbjct: 75 VCRGSSVMMVCPTEGCEP 92
>sp|Q6BR90|LSM6_DEBHA U6 snRNA-associated Sm-like protein LSm6 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=LSM6 PE=3 SV=2
Length = 85
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
PS + IGS + V + E +G L+ D Y+N+VL++ E+ G + +
Sbjct: 17 PSVFLSEIIGSSVTVRLHNGVEYLGNLQSIDGYMNIVLDETKEF---VGGDQARNYGDVF 73
Query: 70 LNGNNI 75
+ GNN+
Sbjct: 74 IRGNNV 79
>sp|Q05856|RSMB_DROME Small nuclear ribonucleoprotein-associated protein B
OS=Drosophila melanogaster GN=SmB PE=1 SV=1
Length = 199
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 38/66 (57%), Gaps = 7/66 (10%)
Query: 21 KIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEY-EITAEGRRITKLDQ------ILLNGN 73
++ ++++ + +GT K FD ++N++L D E+ +I ++ ++ + ++ +LL G
Sbjct: 16 RVRIVLQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPEREEKRVLGFVLLRGE 75
Query: 74 NIAILV 79
NI L
Sbjct: 76 NIVSLT 81
>sp|C6A1T2|RUXX_THESM Putative snRNP Sm-like protein OS=Thermococcus sibiricus (strain
MM 739 / DSM 12597) GN=TSIB_0511 PE=3 SV=1
Length = 76
Score = 36.2 bits (82), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 39/71 (54%), Gaps = 3/71 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P ++I + + ++ VI+K E G L G+D+++N+VL D ++ G +I+
Sbjct: 5 PLDVIHKSLDKEVLVILKRGAEYRGKLIGYDIHLNVVLADA---QLIENGEPKKSYGKIV 61
Query: 70 LNGNNIAILVP 80
+ G+N+ + P
Sbjct: 62 IRGDNVLAISP 72
>sp|Q9UUI1|LSM6_SCHPO U6 snRNA-associated Sm-like protein LSm6 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm6 PE=1 SV=1
Length = 75
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQIL 69
P+E +++ IG K+ + + + G L D Y+N+ LE EY G++
Sbjct: 5 PNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEY---VNGKKTNVYGDAF 61
Query: 70 LNGNNI 75
+ GNN+
Sbjct: 62 IRGNNV 67
>sp|Q1ZXD5|NAA38_DICDI N-alpha-acetyltransferase 38, NatC auxiliary subunit
OS=Dictyostelium discoideum GN=lsm8 PE=3 SV=1
Length = 94
Score = 36.2 bits (82), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 38/66 (57%)
Query: 13 LIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNG 72
+++ + ++ V+ + ++GTL+G D +N+VLE E + EG + L L+ G
Sbjct: 3 MLESYLKKQVLVLTADGRSIIGTLRGIDQTINVVLEKCHERVYSDEGIEVIPLGVHLIKG 62
Query: 73 NNIAIL 78
+++A++
Sbjct: 63 DDVAVI 68
>sp|Q06217|SMD2_YEAST Small nuclear ribonucleoprotein Sm D2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SMD2 PE=1 SV=2
Length = 110
Score = 35.8 bits (81), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 17/81 (20%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 3 HNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRI 62
H P L+ ++ R + + + ++ + +++ +K FD + NMVLE+V E +G+ +
Sbjct: 28 HGPMSLINDAMVTR---TPVIISLRNNHKIIARVKAFDRHCNMVLENVKELWTEKKGKNV 84
Query: 63 TK----LDQILLNGNNIAILV 79
+ ++ L G+++ +++
Sbjct: 85 INRERFISKLFLRGDSVIVVL 105
>sp|Q54W83|LSM1_DICDI Probable U6 snRNA-associated Sm-like protein LSm1
OS=Dictyostelium discoideum GN=lsm1 PE=3 SV=1
Length = 129
Score = 35.8 bits (81), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Query: 18 IGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAI 77
+ K+ V+++ ++ +G ++ FD + N+VL+D E + L + G+N+ I
Sbjct: 9 VDKKLIVVLRDGRKFIGIMRTFDQFANIVLQDTIERIYVGDCYSDKNLGLFFIRGDNVVI 68
Query: 78 LVPGGSPDPE 87
L G DP+
Sbjct: 69 L---GEIDPD 75
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.140 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,649,884
Number of Sequences: 539616
Number of extensions: 1245203
Number of successful extensions: 3263
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 3169
Number of HSP's gapped (non-prelim): 127
length of query: 87
length of database: 191,569,459
effective HSP length: 57
effective length of query: 30
effective length of database: 160,811,347
effective search space: 4824340410
effective search space used: 4824340410
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)