Query 041342
Match_columns 87
No_of_seqs 166 out of 1047
Neff 6.9
Searched_HMMs 29240
Date Mon Mar 25 10:08:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041342.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041342hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4emk_A U6 snRNA-associated SM- 100.0 2.2E-28 7.5E-33 151.6 11.1 78 6-85 17-94 (94)
2 1ljo_A Archaeal SM-like protei 99.9 6.1E-27 2.1E-31 139.8 11.1 74 6-82 2-76 (77)
3 2fwk_A U6 snRNA-associated SM- 99.9 1E-27 3.5E-32 154.3 6.9 81 6-86 25-117 (121)
4 1i8f_A Putative snRNP SM-like 99.9 8.4E-27 2.9E-31 140.6 9.4 78 1-82 1-80 (81)
5 3s6n_F Small nuclear ribonucle 99.9 2.2E-26 7.5E-31 140.4 11.3 75 7-84 4-78 (86)
6 1h64_1 SnRNP SM-like protein; 99.9 2.1E-26 7.1E-31 136.8 10.8 72 8-82 3-74 (75)
7 1mgq_A SM-like protein; LSM, R 99.9 1.7E-26 6E-31 139.8 10.7 72 6-80 12-83 (83)
8 4emk_B U6 snRNA-associated SM- 99.9 8E-27 2.7E-31 138.9 8.7 72 8-82 3-74 (75)
9 1th7_A SnRNP-2, small nuclear 99.9 1.3E-26 4.4E-31 139.7 9.6 77 3-82 3-79 (81)
10 4emg_A Probable U6 snRNA-assoc 99.9 1.4E-26 4.8E-31 143.1 9.8 81 1-81 1-91 (93)
11 1i4k_A Putative snRNP SM-like 99.9 3.6E-26 1.2E-30 136.3 11.0 72 8-82 3-74 (77)
12 3bw1_A SMX4 protein, U6 snRNA- 99.9 3.5E-26 1.2E-30 141.9 11.0 78 6-83 7-88 (96)
13 1d3b_B Protein (small nuclear 99.9 1.3E-26 4.5E-31 142.1 8.1 79 9-87 4-89 (91)
14 1n9r_A SMF, small nuclear ribo 99.9 2.9E-26 9.8E-31 141.8 9.3 76 4-82 16-92 (93)
15 1d3b_A Protein (small nuclear 99.9 1.7E-25 5.7E-30 133.3 10.2 72 7-81 3-74 (75)
16 3s6n_E Small nuclear ribonucle 99.9 3E-26 1E-30 141.5 7.2 75 6-82 13-91 (92)
17 4emh_A Probable U6 snRNA-assoc 99.9 3.1E-25 1.1E-29 139.8 9.0 76 5-82 12-87 (105)
18 4emk_C U6 snRNA-associated SM- 99.9 4.6E-25 1.6E-29 140.6 9.5 77 7-83 21-101 (113)
19 3s6n_G Small nuclear ribonucle 99.9 2.9E-25 9.9E-30 132.5 7.9 70 10-82 5-74 (76)
20 1b34_A Protein (small nuclear 99.9 2.7E-24 9.3E-29 137.9 9.6 73 8-83 1-73 (119)
21 3pgw_B SM B; protein-RNA compl 99.9 5.5E-24 1.9E-28 149.1 11.3 79 8-86 3-88 (231)
22 1b34_B Protein (small nuclear 99.9 4.1E-24 1.4E-28 136.8 9.4 77 7-83 25-114 (118)
23 2y9a_D Small nuclear ribonucle 99.9 3.5E-23 1.2E-27 134.0 9.5 73 7-82 3-75 (126)
24 1m5q_A SMAP3, small nuclear ri 99.9 2.4E-21 8.3E-26 126.0 8.6 67 11-84 2-68 (130)
25 1y96_A Gemin6, SIP2, GEM-assoc 99.2 1.1E-10 3.6E-15 70.9 8.0 67 9-85 8-75 (86)
26 2fb7_A SM-like protein, LSM-14 97.9 3.4E-05 1.2E-09 47.3 5.9 77 10-86 10-93 (95)
27 2vxe_A CG10686-PA; EDC3, CAR-1 97.6 0.00065 2.2E-08 41.0 7.9 69 16-84 10-85 (88)
28 2ylb_A Protein HFQ; RNA-bindin 97.2 0.00047 1.6E-08 40.4 4.4 56 11-82 11-68 (74)
29 1u1s_A HFQ protein; SM-like ba 97.2 0.00052 1.8E-08 41.0 4.4 36 12-47 10-47 (82)
30 3sb2_A Protein HFQ; SM-like, R 97.2 0.00044 1.5E-08 41.1 3.7 35 12-46 11-47 (79)
31 1kq1_A HFQ, HOST factor for Q 97.1 0.0013 4.5E-08 38.8 5.6 37 12-48 10-48 (77)
32 3ahu_A Protein HFQ; SM-like mo 97.1 0.0011 3.6E-08 39.3 5.1 35 13-47 15-51 (78)
33 2vc8_A Enhancer of mRNA-decapp 97.0 0.0023 7.8E-08 38.3 6.1 65 15-85 5-71 (84)
34 2qtx_A Uncharacterized protein 97.0 0.0017 5.9E-08 37.7 5.1 30 19-48 25-54 (71)
35 4a53_A EDC3; RNA binding prote 96.7 0.0055 1.9E-07 39.1 6.4 57 14-84 7-65 (125)
36 2y90_A Protein HFQ; RNA-bindin 96.7 0.0024 8.4E-08 39.6 4.4 39 11-49 11-51 (104)
37 3hfn_A ASL2047 protein; HFQ, S 96.3 0.03 1E-06 32.5 7.1 64 4-81 5-71 (72)
38 3hfo_A SSR3341 protein; HFQ, S 95.9 0.026 8.8E-07 32.6 5.5 44 4-47 3-49 (70)
39 1ycy_A Conserved hypothetical 95.7 0.086 2.9E-06 30.0 7.1 60 12-79 9-68 (71)
40 1y96_B Gemin7, SIP3, GEM-assoc 95.5 0.042 1.4E-06 32.8 5.5 62 11-80 21-83 (85)
41 2rm4_A CG6311-PB, DM EDC3; enh 93.2 0.86 2.9E-05 27.8 8.0 65 15-85 8-74 (103)
42 3rux_A BIRA bifunctional prote 92.9 0.15 5.2E-06 35.7 4.7 34 17-50 222-255 (270)
43 2xk0_A Polycomb protein PCL; t 92.9 0.17 5.7E-06 29.1 4.0 53 3-55 3-56 (69)
44 2eay_A Biotin [acetyl-COA-carb 92.6 0.11 3.6E-06 35.6 3.5 47 17-72 186-232 (233)
45 1ib8_A Conserved protein SP14. 92.3 0.12 4E-06 34.0 3.2 44 3-47 85-135 (164)
46 1bia_A BIRA bifunctional prote 91.8 0.43 1.5E-05 33.9 6.0 48 17-72 271-318 (321)
47 2ej9_A Putative biotin ligase; 91.1 0.59 2E-05 31.9 5.9 32 17-49 190-221 (237)
48 2dxu_A Biotin--[acetyl-COA-car 88.7 0.26 9E-06 33.7 2.6 31 18-50 188-218 (235)
49 4hcz_A PHD finger protein 1; p 85.7 1.3 4.6E-05 24.4 3.8 37 18-54 6-45 (58)
50 2e12_A SM-like motif, hypothet 84.4 2 6.8E-05 25.9 4.5 26 11-36 18-45 (101)
51 3rkx_A Biotin-[acetyl-COA-carb 82.9 2.1 7E-05 30.6 4.9 33 17-50 277-309 (323)
52 3bfm_A Biotin protein ligase-l 78.3 3.2 0.00011 28.0 4.5 29 17-50 192-220 (235)
53 2eqj_A Metal-response element- 73.3 5.8 0.0002 22.4 3.9 25 18-42 16-40 (66)
54 2m0o_A PHD finger protein 1; t 72.3 2.9 0.0001 24.4 2.5 38 17-54 28-68 (79)
55 2qqr_A JMJC domain-containing 71.9 5.2 0.00018 25.0 3.8 32 17-48 7-40 (118)
56 4a8c_A Periplasmic PH-dependen 63.3 11 0.00039 27.5 4.8 31 20-50 88-118 (436)
57 1ky9_A Protease DO, DEGP, HTRA 62.4 12 0.00041 27.6 4.8 31 20-50 111-141 (448)
58 3fb9_A Uncharacterized protein 62.1 16 0.00054 21.7 4.4 28 12-39 18-49 (90)
59 2e5q_A PHD finger protein 19; 59.4 14 0.00048 20.5 3.6 37 18-54 10-49 (63)
60 2e5p_A Protein PHF1, PHD finge 58.9 17 0.00057 20.5 3.9 37 18-54 12-51 (68)
61 3stj_A Protease DEGQ; serine p 54.6 17 0.00058 25.8 4.3 31 20-50 88-118 (345)
62 3pv2_A DEGQ; trypsin fold, PDZ 51.3 15 0.00052 27.1 3.7 31 20-50 102-132 (451)
63 3sti_A Protease DEGQ; serine p 49.3 19 0.00065 24.3 3.7 31 20-50 88-118 (245)
64 3lgi_A Protease DEGS; stress-s 47.6 29 0.001 22.9 4.4 30 20-49 77-106 (237)
65 3kdf_A Replication protein A 1 47.3 7.3 0.00025 24.1 1.2 25 1-25 4-28 (121)
66 1x4r_A PARP14 protein; WWE dom 47.1 1.2 3.9E-05 27.2 -2.5 19 33-51 34-52 (99)
67 3tjo_A Serine protease HTRA1; 46.6 31 0.0011 22.8 4.4 31 20-50 87-117 (231)
68 1lcy_A HTRA2 serine protease; 46.5 29 0.00099 24.2 4.4 31 20-50 71-101 (325)
69 1y8t_A Hypothetical protein RV 45.4 27 0.00094 24.1 4.1 31 20-50 64-94 (324)
70 1te0_A Protease DEGS; two doma 45.4 30 0.001 23.9 4.3 31 20-50 66-96 (318)
71 2xdp_A Lysine-specific demethy 43.4 32 0.0011 21.5 3.8 23 18-40 67-89 (123)
72 3qo6_A Protease DO-like 1, chl 40.3 41 0.0014 23.6 4.5 31 20-50 77-107 (348)
73 2equ_A PHD finger protein 20-l 40.0 49 0.0017 18.6 3.9 25 18-42 12-36 (74)
74 1sg5_A ORF, hypothetical prote 39.6 9.4 0.00032 22.3 0.8 20 17-36 23-42 (86)
75 2qqr_A JMJC domain-containing 39.4 40 0.0014 20.8 3.8 23 18-40 66-88 (118)
76 3p8d_A Medulloblastoma antigen 38.8 51 0.0017 18.3 4.0 25 18-42 9-33 (67)
77 2wr8_A Putative uncharacterize 38.4 29 0.00099 24.2 3.3 20 29-48 171-190 (259)
78 3num_A Serine protease HTRA1; 37.3 59 0.002 22.5 4.8 30 20-49 70-99 (332)
79 4fln_A Protease DO-like 2, chl 37.1 34 0.0012 26.2 3.7 30 20-49 97-127 (539)
80 2zbv_A Uncharacterized conserv 37.0 31 0.0011 24.0 3.3 20 29-48 167-186 (263)
81 3tee_A Flagella basal BODY P-r 36.8 24 0.00082 23.7 2.6 22 17-38 169-190 (219)
82 3qx1_A FAS-associated factor 1 35.1 27 0.00092 19.5 2.3 21 21-41 9-29 (84)
83 3hpa_A Amidohydrolase; signatu 34.2 78 0.0027 21.7 5.0 38 43-81 29-67 (479)
84 3qii_A PHD finger protein 20; 34.1 67 0.0023 18.7 4.0 25 18-42 24-48 (85)
85 3mkv_A Putative amidohydrolase 32.4 70 0.0024 20.6 4.4 37 44-82 5-41 (426)
86 1nvp_D Transcription initiatio 31.4 48 0.0016 20.1 3.1 26 28-53 53-81 (108)
87 2w5e_A Putative serine proteas 29.9 1.1E+02 0.0036 19.3 4.8 26 20-47 43-68 (163)
88 3uby_A DNA-3-methyladenine gly 28.1 99 0.0034 21.0 4.6 33 11-43 17-49 (219)
89 3kl9_A PEPA, glutamyl aminopep 27.4 48 0.0017 23.6 3.0 23 16-38 96-118 (355)
90 2dzk_A UBX domain-containing p 26.9 54 0.0018 19.4 2.8 21 20-40 14-34 (109)
91 2pi2_E Replication protein A 1 26.3 23 0.0008 22.4 1.1 22 4-25 28-49 (142)
92 2dir_A Thump domain-containing 25.9 66 0.0023 18.4 3.0 22 20-41 75-96 (98)
93 4a4f_A SurviVal of motor neuro 25.8 82 0.0028 16.7 3.8 25 18-42 11-36 (64)
94 1g5v_A SurviVal motor neuron p 25.2 1E+02 0.0036 17.7 3.8 24 18-41 13-37 (88)
95 1wj4_A KIAA0794 protein; UBX d 24.5 49 0.0017 20.2 2.3 22 20-41 44-65 (124)
96 2qs8_A XAA-Pro dipeptidase; am 24.5 85 0.0029 21.7 3.9 42 38-81 2-43 (418)
97 1mhn_A SurviVal motor neuron p 24.3 84 0.0029 16.3 3.8 23 19-41 7-30 (59)
98 3frn_A Flagellar protein FLGA; 24.2 61 0.0021 22.9 3.0 22 17-38 238-260 (278)
99 2cw5_A Bacterial fluorinating 23.8 42 0.0014 23.3 2.1 17 32-48 174-190 (255)
100 1rqp_A 5'-fluoro-5'-deoxyadeno 23.2 56 0.0019 23.3 2.7 20 29-48 199-219 (299)
101 2cr5_A Reproduction 8; UBX dom 23.1 63 0.0022 19.0 2.6 22 20-41 24-45 (109)
102 1zq1_A Glutamyl-tRNA(Gln) amid 22.9 75 0.0026 23.7 3.4 40 12-51 5-55 (438)
103 2p5z_X Type VI secretion syste 22.8 1E+02 0.0035 22.5 4.1 28 14-41 58-96 (491)
104 4gop_A Putative uncharacterize 22.2 42 0.0014 20.3 1.6 22 4-25 3-24 (114)
105 1l1j_A Heat shock protease HTR 22.2 33 0.0011 22.9 1.3 30 20-49 80-109 (239)
106 2q6k_A Chlorinase; complex wit 22.0 47 0.0016 23.3 2.1 20 29-48 172-192 (283)
107 3feq_A Putative amidohydrolase 20.9 2.1E+02 0.007 19.5 5.9 37 43-81 4-40 (423)
108 4g9s_B Inhibitor of G-type lys 20.4 43 0.0015 19.7 1.4 22 19-40 2-26 (111)
109 4e0q_A COP9 signalosome comple 20.2 1.1E+02 0.0039 18.8 3.5 27 29-55 32-58 (141)
110 3j21_c 50S ribosomal protein L 20.0 74 0.0025 18.6 2.3 34 12-45 33-66 (87)
No 1
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.96 E-value=2.2e-28 Score=151.64 Aligned_cols=78 Identities=55% Similarity=1.029 Sum_probs=68.0
Q ss_pred CCcCcHHHHhhhcCCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEeCCCCC
Q 041342 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPD 85 (87)
Q Consensus 6 ~~~~Pl~~L~~~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~~~~p~ 85 (87)
.+..|+++|.++++++|+|+|+|||.|+|+|.|||+|||++|+||+|+.. ++.+.+.+|.++|||++|++|++.++|.
T Consensus 17 ~~~~Pl~lL~~~l~k~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~--~~~~~~~lg~v~IRG~nI~~i~p~~~p~ 94 (94)
T 4emk_A 17 MTILPLELIDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDT--VTGVTEKHSEMLLNGNGMCMLIPGGKPE 94 (94)
T ss_dssp ---CHHHHHHHTTTSEEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEET--TTCCEEEEEEEEECSTTEEEEEECC---
T ss_pred ccccCHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEec--CCCcEeEcCEEEEcCCEEEEEEeCCCCC
Confidence 56899999999999999999999999999999999999999999999973 3445789999999999999999998873
No 2
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.95 E-value=6.1e-27 Score=139.85 Aligned_cols=74 Identities=34% Similarity=0.684 Sum_probs=68.3
Q ss_pred CCcCcHHHHhhhcCCEEEEEEcCC-cEEEEEEEEeccccceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEeCC
Q 041342 6 SQLLPSELIDRCIGSKIWVIMKGD-KELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 82 (87)
Q Consensus 6 ~~~~Pl~~L~~~l~k~V~V~l~dg-r~~~G~L~~~D~~mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~~~ 82 (87)
+++.|+.+|.++++++|+|+|+|| +.|+|+|.|||+|||++|+||+|++ .+...+.+|.++|||++|++|++.+
T Consensus 2 ~m~~P~~~L~~~~~~~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~---~~~~~~~lg~v~iRG~nI~~i~~~d 76 (77)
T 1ljo_A 2 AMVLPNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECK---GEEKVRSLGEIVLRGNNVVLIQPQE 76 (77)
T ss_dssp CCCCHHHHHHHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEE---TTEEEEEEEEEEECGGGEEEEEEC-
T ss_pred CccchHHHHHHHCCCEEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEe---cCCcEeECCeEEEeCCeEEEEEeCC
Confidence 457999999999999999999999 9999999999999999999999997 3556889999999999999999864
No 3
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.94 E-value=1e-27 Score=154.28 Aligned_cols=81 Identities=58% Similarity=1.107 Sum_probs=70.1
Q ss_pred CCcCcHHHHhhhcCCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEcc-------CCee-----eEeeCeEEEcCC
Q 041342 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITA-------EGRR-----ITKLDQILLNGN 73 (87)
Q Consensus 6 ~~~~Pl~~L~~~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~-------~g~~-----~~~~g~v~IRG~ 73 (87)
.+..|+++|.++++++|+|+|+|||.|+|+|.|||+||||+|+||+|++... +|.. .+.+|.++|||+
T Consensus 25 ~~~~Pl~lL~~~l~k~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG~ 104 (121)
T 2fwk_A 25 NIILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGN 104 (121)
T ss_dssp CCCCHHHHHHHTBTSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEECGG
T ss_pred cccCcHHHHHHHcCCeEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEECCC
Confidence 5689999999999999999999999999999999999999999999998531 2333 688999999999
Q ss_pred cEEEEEeCCCCCC
Q 041342 74 NIAILVPGGSPDP 86 (87)
Q Consensus 74 ~I~~I~~~~~p~~ 86 (87)
+|++|.+.+.|++
T Consensus 105 nVv~I~~~~~~~~ 117 (121)
T 2fwk_A 105 NVAMLVPGGDPDS 117 (121)
T ss_dssp GEEEEESSSCC--
T ss_pred EEEEEEecCCCCC
Confidence 9999999999875
No 4
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.94 E-value=8.4e-27 Score=140.58 Aligned_cols=78 Identities=27% Similarity=0.460 Sum_probs=66.6
Q ss_pred CCCCC--CCcCcHHHHhhhcCCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEE
Q 041342 1 MAHNP--SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAIL 78 (87)
Q Consensus 1 ~~~~~--~~~~Pl~~L~~~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I 78 (87)
||+.. ....|+.+|.++++++|+|+|+||+.|+|+|.|||+|||++|+||+|+ . +...+.+|.++|||++|++|
T Consensus 1 m~~~~~~~~~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~-~---~~~~~~lg~v~iRG~~I~~i 76 (81)
T 1i8f_A 1 MASDISKCFATLGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI-I---DGNVYKRGTMVVRGENVLFI 76 (81)
T ss_dssp ---------CCHHHHHHTTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEE-E---TTEEEEEEEEEECGGGEEEE
T ss_pred CCcccCccccchHHHHHHHCCCeEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEE-c---CCcccCCCEEEECCCEEEEE
Confidence 55543 468999999999999999999999999999999999999999999998 2 34578999999999999999
Q ss_pred EeCC
Q 041342 79 VPGG 82 (87)
Q Consensus 79 ~~~~ 82 (87)
++.+
T Consensus 77 ~~~d 80 (81)
T 1i8f_A 77 SPVP 80 (81)
T ss_dssp EECC
T ss_pred EeCC
Confidence 9865
No 5
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.94 E-value=2.2e-26 Score=140.41 Aligned_cols=75 Identities=27% Similarity=0.381 Sum_probs=68.4
Q ss_pred CcCcHHHHhhhcCCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEeCCCC
Q 041342 7 QLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSP 84 (87)
Q Consensus 7 ~~~Pl~~L~~~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~~~~p 84 (87)
+..|+.+|+++++++|+|+|+||+.|+|+|.|||+|||++|+||+|+. +|+..+.+|.++|||++|++|++.+.-
T Consensus 4 ~~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~---~g~~~~~lg~v~IRG~nI~~i~~~d~~ 78 (86)
T 3s6n_F 4 PLNPKPFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYI---DGALSGHLGEVLIRCNNVLYIRGVEEE 78 (86)
T ss_dssp CCCHHHHHHHHTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEE---TTEEEEEESSEEECGGGEEEEEECC--
T ss_pred CcCcHHHHHHhCCCeEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEc---CCceeeEccEEEEeCCeEEEEEeCCcc
Confidence 478999999999999999999999999999999999999999999875 566678999999999999999987643
No 6
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.94 E-value=2.1e-26 Score=136.84 Aligned_cols=72 Identities=28% Similarity=0.565 Sum_probs=66.7
Q ss_pred cCcHHHHhhhcCCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEeCC
Q 041342 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 82 (87)
Q Consensus 8 ~~Pl~~L~~~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~~~ 82 (87)
..|+.+|.++++++|+|+|+||+.|+|+|.|||+|||++|+||+|++ .+...+.+|.++|||++|++|++.+
T Consensus 3 ~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~---~~~~~~~lg~v~iRG~~I~~i~~~~ 74 (75)
T 1h64_1 3 ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQ---DGEVVKRYGKIVIRGDNVLAISPTE 74 (75)
T ss_dssp CCHHHHHHTTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEE---TTEEEEEEEEEEECGGGEEEEEEC-
T ss_pred chHHHHHHHHCCCEEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEe---eCCceeECCEEEECCCEEEEEEeCC
Confidence 47999999999999999999999999999999999999999999997 3456889999999999999999864
No 7
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.94 E-value=1.7e-26 Score=139.81 Aligned_cols=72 Identities=33% Similarity=0.648 Sum_probs=67.5
Q ss_pred CCcCcHHHHhhhcCCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEe
Q 041342 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVP 80 (87)
Q Consensus 6 ~~~~Pl~~L~~~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~ 80 (87)
+...|+.+|.++++++|+|+|+||+.|+|+|.|||+|||++|+||+|++ .+...+.+|.++|||++|++|++
T Consensus 12 ~~~~P~~~L~~~~~~~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~---~~~~~~~lg~v~IRG~~I~~i~p 83 (83)
T 1mgq_A 12 NVQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELE---DGEVTRRLGTVLIRGDNIVYISP 83 (83)
T ss_dssp CTTCTTHHHHHTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEE---TTEEEEEEEEEEECGGGEEEEEC
T ss_pred cCcChHHHHHHhCCCEEEEEEcCCcEEEEEEEEECCCceeEEccEEEEe---cCCcccCCCEEEECCCEEEEEEC
Confidence 6689999999999999999999999999999999999999999999997 34568899999999999999975
No 8
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.94 E-value=8e-27 Score=138.89 Aligned_cols=72 Identities=25% Similarity=0.511 Sum_probs=67.0
Q ss_pred cCcHHHHhhhcCCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEeCC
Q 041342 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 82 (87)
Q Consensus 8 ~~Pl~~L~~~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~~~ 82 (87)
..|+++|+++++++|+|+|+||+.|+|+|.|||+|||++|+||+|+. ++...+.+|.++|||++|++|++.+
T Consensus 3 ~~P~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~---~~~~~~~lg~v~iRG~~I~~i~~~~ 74 (75)
T 4emk_B 3 SSPNEFLNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLALERTEEYV---NGKKTNVYGDAFIRGNNVLYVSALD 74 (75)
T ss_dssp SHHHHHHHHTTTSEEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEE---TTEEEEEEEEEEEEGGGSSEEEEC-
T ss_pred CchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEe---cCCcccEecEEEEcCCeEEEEEecC
Confidence 57999999999999999999999999999999999999999999986 5666889999999999999999875
No 9
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.94 E-value=1.3e-26 Score=139.70 Aligned_cols=77 Identities=26% Similarity=0.440 Sum_probs=69.2
Q ss_pred CCCCCcCcHHHHhhhcCCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEeCC
Q 041342 3 HNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 82 (87)
Q Consensus 3 ~~~~~~~Pl~~L~~~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~~~ 82 (87)
++.-...|+.+|.++++++|+|+|+||+.|+|+|.|||+|||++|+||+|++ .+...+.+|.++|||++|++|.+.+
T Consensus 3 m~~~~~~P~~~L~~~~~~~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~---~~~~~~~lg~v~iRG~~I~~i~~~~ 79 (81)
T 1th7_A 3 MNFLAETAHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQ---SDGSGKKLGTIVIRGDNVILISPLQ 79 (81)
T ss_dssp CCTTCHHHHHHHHHHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEC---SSSCEEEEEEEEECGGGEEEEEEC-
T ss_pred ccccccchHHHHHHhCCCeEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEe---cCCceeECCEEEECCCEEEEEEecC
Confidence 3455678999999999999999999999999999999999999999999997 3345789999999999999999865
No 10
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.94 E-value=1.4e-26 Score=143.12 Aligned_cols=81 Identities=25% Similarity=0.467 Sum_probs=65.4
Q ss_pred CCCCCCCcCcHHHHhhhcCCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEcc--CC--------eeeEeeCeEEE
Q 041342 1 MAHNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITA--EG--------RRITKLDQILL 70 (87)
Q Consensus 1 ~~~~~~~~~Pl~~L~~~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~--~g--------~~~~~~g~v~I 70 (87)
|++......|+++|+.+++++|+|+|+|||.|+|+|.|||+|||++|+||+|++... ++ ...+.+|.++|
T Consensus 1 m~~~~~~~~Pl~lL~~~~~~~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~i 80 (93)
T 4emg_A 1 MESAQAVAEPLDLVRLSLDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFV 80 (93)
T ss_dssp --------CTTHHHHTTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEEE
T ss_pred CCcccccCCCHHHHHHhCCCEEEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEEE
Confidence 565567789999999999999999999999999999999999999999999998531 12 24789999999
Q ss_pred cCCcEEEEEeC
Q 041342 71 NGNNIAILVPG 81 (87)
Q Consensus 71 RG~~I~~I~~~ 81 (87)
||++|++|++.
T Consensus 81 RG~nVv~I~p~ 91 (93)
T 4emg_A 81 RGDSVILIAPP 91 (93)
T ss_dssp CGGGEEEEECC
T ss_pred CCCeEEEEEec
Confidence 99999999974
No 11
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.94 E-value=3.6e-26 Score=136.35 Aligned_cols=72 Identities=29% Similarity=0.629 Sum_probs=67.1
Q ss_pred cCcHHHHhhhcCCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEeCC
Q 041342 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 82 (87)
Q Consensus 8 ~~Pl~~L~~~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~~~ 82 (87)
..|+++|.++++++|+|+|+||+.|+|+|.|||+|||++|+||+|++ .+...+.+|.++|||++|++|.+.+
T Consensus 3 ~~P~~~L~~~~~~~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~---~~~~~~~lg~v~iRG~~I~~i~~~d 74 (77)
T 1i4k_A 3 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQ---NGEVVRKVGSVVIRGDTVVFVSPAP 74 (77)
T ss_dssp CCHHHHHHTTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEE---TTEEEEEEEEEEECGGGEEEEEECC
T ss_pred ccHHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEe---cCCcEeECCEEEECCCEEEEEEeCC
Confidence 47999999999999999999999999999999999999999999997 3456889999999999999999865
No 12
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.94 E-value=3.5e-26 Score=141.91 Aligned_cols=78 Identities=21% Similarity=0.462 Sum_probs=69.9
Q ss_pred CCcCcHHHHhhhcCCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEccC----CeeeEeeCeEEEcCCcEEEEEeC
Q 041342 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE----GRRITKLDQILLNGNNIAILVPG 81 (87)
Q Consensus 6 ~~~~Pl~~L~~~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~~----g~~~~~~g~v~IRG~~I~~I~~~ 81 (87)
-+..|+.+|.++++++|+|+|+|||.|+|+|.|||+|||++|+||+|++...+ +...+.+|.++|||++|++|++.
T Consensus 7 ~~~~p~~~L~~~i~k~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nVv~I~~~ 86 (96)
T 3bw1_A 7 HMETPLDLLKLNLDERVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGDTVTLISTP 86 (96)
T ss_dssp CCCCHHHHHGGGTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCCCEEEEEEEEEEECGGGEEEEECC
T ss_pred hhhhHHHHHHHHCCCeEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEeccccccccCcceeEcCEEEECCCEEEEEEec
Confidence 46789999999999999999999999999999999999999999999986422 34578999999999999999976
Q ss_pred CC
Q 041342 82 GS 83 (87)
Q Consensus 82 ~~ 83 (87)
+.
T Consensus 87 d~ 88 (96)
T 3bw1_A 87 SE 88 (96)
T ss_dssp C-
T ss_pred Cc
Confidence 54
No 13
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.94 E-value=1.3e-26 Score=142.11 Aligned_cols=79 Identities=25% Similarity=0.427 Sum_probs=67.0
Q ss_pred CcHHHHhhhcCCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEcc-------CCeeeEeeCeEEEcCCcEEEEEeC
Q 041342 9 LPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITA-------EGRRITKLDQILLNGNNIAILVPG 81 (87)
Q Consensus 9 ~Pl~~L~~~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~-------~g~~~~~~g~v~IRG~~I~~I~~~ 81 (87)
.|..+|.++++++|+|+|+|||.|+|+|.|||+||||+|+||+|++... ++...+.+|.++|||++|++|++.
T Consensus 4 ~~~~~L~~~~~k~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~iRG~~I~~i~~~ 83 (91)
T 1d3b_B 4 GKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVE 83 (91)
T ss_dssp ---CCCGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEEEEEEE
T ss_pred ChhHHHHHHcCCcEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeeccccccccccCccEeECCEEEECCCeEEEEEcC
Confidence 4667889999999999999999999999999999999999999986321 234678999999999999999999
Q ss_pred CCCCCC
Q 041342 82 GSPDPE 87 (87)
Q Consensus 82 ~~p~~~ 87 (87)
+.|+++
T Consensus 84 ~~~~~~ 89 (91)
T 1d3b_B 84 GPPPKD 89 (91)
T ss_dssp ECCC--
T ss_pred CCCCCC
Confidence 988753
No 14
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.94 E-value=2.9e-26 Score=141.78 Aligned_cols=76 Identities=22% Similarity=0.326 Sum_probs=62.2
Q ss_pred CCCCcCcHHHHhhhcCCEEEEEEcCC-cEEEEEEEEeccccceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEeCC
Q 041342 4 NPSQLLPSELIDRCIGSKIWVIMKGD-KELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 82 (87)
Q Consensus 4 ~~~~~~Pl~~L~~~l~k~V~V~l~dg-r~~~G~L~~~D~~mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~~~ 82 (87)
..+...|+.+|.++++++|+|+|+|| +.|+|+|.|||+|||++|+||+|++ ++...+.+|.++|||++|++|.+.+
T Consensus 16 ~~~~~~P~~~L~~~i~k~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~---~~~~~~~lg~v~IRG~nI~~I~~~~ 92 (93)
T 1n9r_A 16 AMQPVNPKPFLKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFV---AGVSHGTLGEIFIRCNNVLYIRELP 92 (93)
T ss_dssp ----------CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEE---TTEEEEECCSEEECGGGEEEEEECC
T ss_pred ccccCChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEc---CCCeEeEcCEEEEcCCeEEEEEeCC
Confidence 34568899999999999999999999 9999999999999999999999986 4666889999999999999998764
No 15
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.93 E-value=1.7e-25 Score=133.34 Aligned_cols=72 Identities=18% Similarity=0.289 Sum_probs=65.8
Q ss_pred CcCcHHHHhhhcCCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEeC
Q 041342 7 QLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPG 81 (87)
Q Consensus 7 ~~~Pl~~L~~~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~~ 81 (87)
...|+++|++++|++|+|+|++|++|+|+|.|||+|||++|+||+|+. +++ +.+.+|.++|||++|.+|+..
T Consensus 3 ~~~P~~~L~~~~g~~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~--~~~-~~~~lg~v~IRG~nI~~i~lP 74 (75)
T 1d3b_A 3 IGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTY--RDG-RVAQLEQVYIRGCKIRFLILP 74 (75)
T ss_dssp -CCHHHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC--TTS-CEEEEEEEEECGGGEEEEEEC
T ss_pred ccCHHHHHHHhCCCEEEEEECCCcEEEEEEEEEccceeEEEEeEEEEC--CCC-cEEEcCeEEEeCCEEEEEEcC
Confidence 467999999999999999999999999999999999999999999985 244 378999999999999999875
No 16
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.93 E-value=3e-26 Score=141.48 Aligned_cols=75 Identities=28% Similarity=0.500 Sum_probs=67.6
Q ss_pred CCcCcHHHHhhhcCCEEEEEE----cCCcEEEEEEEEeccccceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEeC
Q 041342 6 SQLLPSELIDRCIGSKIWVIM----KGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPG 81 (87)
Q Consensus 6 ~~~~Pl~~L~~~l~k~V~V~l----~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~~ 81 (87)
.+.+|+++|.++++++++|++ +||++|+|+|.|||+|||++|+||+|+.. ++...+.+|.++|||++|++|++.
T Consensus 13 ~m~~Pl~lL~~~l~~~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~--~~~~~~~lg~v~iRG~nV~~i~~~ 90 (92)
T 3s6n_E 13 VMVQPINLIFRYLQNRSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHS--KTKSRKQLGRIMLKGDNITLLQSV 90 (92)
T ss_dssp -CCCHHHHHHHHHHHTCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECS--SSCCEEEEEEEEECGGGEEEEEEC
T ss_pred eccCCHHHHHHHhCCCEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEec--CCCceeEcCeEEEeCCEEEEEEeC
Confidence 479999999999999999988 99999999999999999999999999963 344578999999999999999986
Q ss_pred C
Q 041342 82 G 82 (87)
Q Consensus 82 ~ 82 (87)
+
T Consensus 91 ~ 91 (92)
T 3s6n_E 91 S 91 (92)
T ss_dssp -
T ss_pred C
Confidence 4
No 17
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.92 E-value=3.1e-25 Score=139.81 Aligned_cols=76 Identities=28% Similarity=0.473 Sum_probs=56.3
Q ss_pred CCCcCcHHHHhhhcCCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEeCC
Q 041342 5 PSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 82 (87)
Q Consensus 5 ~~~~~Pl~~L~~~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~~~ 82 (87)
..+-.|+.+|.++++++|+|+|+||+.|+|+|.|||+|||++|+||+|+. .+|+..+.+|.++|||++|++|...+
T Consensus 12 ~~~~~p~~lL~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~--~dg~~~~~lg~v~IRG~nI~~I~~pd 87 (105)
T 4emh_A 12 QDPMLPLTLLNATQGRPILVELKNGETFNGHLENCDNYMNLTLREVIRTM--PDGDKFFRLPECYIRGNNIKYLRIQD 87 (105)
T ss_dssp --------------CCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC--TTSCEEEEEEEEEECGGGEEEEEC--
T ss_pred CCCCcHHHHHHHhCCCEEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEc--cCCceeeEcCeEEEeCCeEEEEecCH
Confidence 34578999999999999999999999999999999999999999999985 36666789999999999999998754
No 18
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.92 E-value=4.6e-25 Score=140.56 Aligned_cols=77 Identities=27% Similarity=0.462 Sum_probs=57.3
Q ss_pred CcCcHHHHhhhcCCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEccCC----eeeEeeCeEEEcCCcEEEEEeCC
Q 041342 7 QLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEG----RRITKLDQILLNGNNIAILVPGG 82 (87)
Q Consensus 7 ~~~Pl~~L~~~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~~g----~~~~~~g~v~IRG~~I~~I~~~~ 82 (87)
...|+..|.++++++|+|+|+|||.|+|+|.|||+||||||+||+|++...++ ...+.+|.++|||++|++|++.+
T Consensus 21 kke~i~~L~~~l~k~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d 100 (113)
T 4emk_C 21 RKESILDLSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIAPMD 100 (113)
T ss_dssp -----------CCSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC---------CCEEEEEEEEECTTTEEEEEECC
T ss_pred ccchHHHHHHHcCCcEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCCCcccccceeEccEEEECCCeEEEEEecC
Confidence 35678899999999999999999999999999999999999999999754322 35789999999999999999876
Q ss_pred C
Q 041342 83 S 83 (87)
Q Consensus 83 ~ 83 (87)
.
T Consensus 101 ~ 101 (113)
T 4emk_C 101 G 101 (113)
T ss_dssp -
T ss_pred c
Confidence 4
No 19
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.92 E-value=2.9e-25 Score=132.47 Aligned_cols=70 Identities=20% Similarity=0.483 Sum_probs=52.6
Q ss_pred cHHHHhhhcCCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEeCC
Q 041342 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 82 (87)
Q Consensus 10 Pl~~L~~~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~~~ 82 (87)
|-.+|.++++++|+|+|+|||.|+|+|.|||+|||++|+||+|+.. +.+.+.+|.++|||++|++|++.+
T Consensus 5 ~~~~L~~~~~k~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~---~~~~~~lg~v~iRG~~I~~i~~~d 74 (76)
T 3s6n_G 5 HPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMAT---SGQQNNIGMVVIRGNSIIMLEALE 74 (76)
T ss_dssp ---------CCEEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCC---C----CBSSEEECSSSEEEEEC--
T ss_pred chHHHHHhCCCeEEEEECCCcEEEEEEEEECCcceEEEeceEEEcc---CCcEeEcCEEEECCCeEEEEEecc
Confidence 5578999999999999999999999999999999999999999863 234689999999999999999875
No 20
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.91 E-value=2.7e-24 Score=137.95 Aligned_cols=73 Identities=22% Similarity=0.330 Sum_probs=66.1
Q ss_pred cCcHHHHhhhcCCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEeCCC
Q 041342 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGS 83 (87)
Q Consensus 8 ~~Pl~~L~~~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~~~~ 83 (87)
+.|+.+|.++++++|+|+|+||++|+|+|.+||+|||++|+||+|+. .+.+.+.+|.+||||++|++|++.+.
T Consensus 1 M~p~~~L~~~~gk~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~---~~~~~~~lg~v~IRG~nI~~I~~pd~ 73 (119)
T 1b34_A 1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTL---KNREPVQLETLSIRGNNIRYFILPDS 73 (119)
T ss_dssp -CHHHHHHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEEC---TTSCCEEEEEEEECGGGEEEEECCTT
T ss_pred CChHHHHHHhCCCEEEEEEcCCCEEEEEEEEEcccceEEeccEEEec---CCCceeEcceEEEcCCeEEEEEeccc
Confidence 47999999999999999999999999999999999999999999985 23346899999999999999997654
No 21
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.91 E-value=5.5e-24 Score=149.13 Aligned_cols=79 Identities=25% Similarity=0.423 Sum_probs=69.7
Q ss_pred cCcHHHHhhhcCCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEc--c-----CCeeeEeeCeEEEcCCcEEEEEe
Q 041342 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEIT--A-----EGRRITKLDQILLNGNNIAILVP 80 (87)
Q Consensus 8 ~~Pl~~L~~~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~--~-----~g~~~~~~g~v~IRG~~I~~I~~ 80 (87)
+.+-..|.++++|+|+|+|+|||+|+|+|++||+||||||+||+|++.. + ++++.+++|++||||+||++|+.
T Consensus 3 v~k~~kL~klIdKrV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~IRGdnIV~Isv 82 (231)
T 3pgw_B 3 VGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTV 82 (231)
T ss_pred cCchHHHHHhcCCeEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccccccccceeEeceEEECCCcEEEEEe
Confidence 4567899999999999999999999999999999999999999999741 1 23468999999999999999998
Q ss_pred CCCCCC
Q 041342 81 GGSPDP 86 (87)
Q Consensus 81 ~~~p~~ 86 (87)
.+.|++
T Consensus 83 e~pPp~ 88 (231)
T 3pgw_B 83 EGPPPK 88 (231)
T ss_pred cCCCCC
Confidence 887754
No 22
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.91 E-value=4.1e-24 Score=136.83 Aligned_cols=77 Identities=22% Similarity=0.456 Sum_probs=64.4
Q ss_pred CcCcHHHHhhhc--CCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEcc--C--C-------eeeEeeCeEEEcCC
Q 041342 7 QLLPSELIDRCI--GSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITA--E--G-------RRITKLDQILLNGN 73 (87)
Q Consensus 7 ~~~Pl~~L~~~l--~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~--~--g-------~~~~~~g~v~IRG~ 73 (87)
+..|+++|.+++ +++|+|+|+|||.|+|+|.|||+|||++|+||+|++... + + ...+.+|.+||||+
T Consensus 25 ~~~Pl~lL~~~~~~~k~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~ 104 (118)
T 1b34_B 25 NTGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGD 104 (118)
T ss_dssp -CCHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEEECGG
T ss_pred ccChHHHHHHHhcCCcEEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeEEEcCC
Confidence 579999999999 599999999999999999999999999999999987431 1 1 12467999999999
Q ss_pred cEEEEEeCCC
Q 041342 74 NIAILVPGGS 83 (87)
Q Consensus 74 ~I~~I~~~~~ 83 (87)
+|++|++.+.
T Consensus 105 nVv~I~~~~~ 114 (118)
T 1b34_B 105 SVIVVLRNPL 114 (118)
T ss_dssp GEEEEEECCC
T ss_pred EEEEEEeCch
Confidence 9999998765
No 23
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.89 E-value=3.5e-23 Score=134.04 Aligned_cols=73 Identities=18% Similarity=0.297 Sum_probs=66.2
Q ss_pred CcCcHHHHhhhcCCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEeCC
Q 041342 7 QLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 82 (87)
Q Consensus 7 ~~~Pl~~L~~~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~~~ 82 (87)
...|+++|+++++++|+|+|++|++|+|+|.+||+|||++|+||+|+. .+++ ...++.+||||++|.+|+..+
T Consensus 3 ~~~P~~~L~~~~gk~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~--~~g~-~~~l~~v~IRGnnI~~I~lpd 75 (126)
T 2y9a_D 3 IGVPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTY--RDGR-VAQLEQVYIRGSKIRFLILPD 75 (126)
T ss_dssp -CCSHHHHHSCSSCEEEEEESSCCEEEEEEEEECTTSCEEEEEEEEEC--TTSC-CEEEEEEEECGGGEEEEECCS
T ss_pred cccHHHHHHHhCCCEEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEc--CCCc-EeecccEEEeCCEEEEEEccc
Confidence 468999999999999999999999999999999999999999999985 3453 789999999999999999654
No 24
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.85 E-value=2.4e-21 Score=125.97 Aligned_cols=67 Identities=16% Similarity=0.321 Sum_probs=61.8
Q ss_pred HHHHhhhcCCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEeCCCC
Q 041342 11 SELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSP 84 (87)
Q Consensus 11 l~~L~~~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~~~~p 84 (87)
..+|.+++|++|+|+|+||+.|+|+|.|||+|||++|+||+|+ ++ +.+|.++|||++|++|.+.+.|
T Consensus 2 ~~~L~~~igk~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~----~~---~~lg~v~IRG~nI~~I~~~d~~ 68 (130)
T 1m5q_A 2 VAELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNK----AG---EKFNRVFIMYRYIVHIDSTERR 68 (130)
T ss_dssp HHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEECT----TC---CEEEEEEECGGGEEEEEECCCC
T ss_pred hhHHHHhCCCeEEEEECCCcEEEEEEEEEcccceeEEeeEEEE----cC---CEeceEEEeCCeEEEEEcCCcc
Confidence 3689999999999999999999999999999999999999996 22 5789999999999999998876
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=99.19 E-value=1.1e-10 Score=70.94 Aligned_cols=67 Identities=19% Similarity=0.165 Sum_probs=58.8
Q ss_pred CcHHHHhhhcCCEEEEEEcCCcEEEEEEEEec-cccceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEeCCCCC
Q 041342 9 LPSELIDRCIGSKIWVIMKGDKELVGTLKGFD-VYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPD 85 (87)
Q Consensus 9 ~Pl~~L~~~l~k~V~V~l~dgr~~~G~L~~~D-~~mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~~~~p~ 85 (87)
.|+ .|.+++||+|.|.+.||++|+|+|.+|| ...|++|.||. ++. ....++|.|..|..|...+.|+
T Consensus 8 ~p~-el~~li~KeV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~~------~~~---~~~~~iI~G~aI~eI~v~~~~~ 75 (86)
T 1y96_A 8 GPL-EWQDYIYKEVRVTASEKNEYKGWVLTTDPVSANIVLVNFL------EDG---SMSVTGIMGHAVQTVETMNEGD 75 (86)
T ss_dssp CHH-HHHHTTTCEEEEEETTTEEEEEEEEEECTTTCCEEEEEEC------TTS---CEEEEEECGGGEEEEEEEECCC
T ss_pred CHH-HHHhhcCCEEEEEEcCCCEEEEEEEEECCCceEEEEeecc------cCC---eEEEEEEecceEEEEEEecchh
Confidence 455 7899999999999999999999999999 89999999992 222 3578999999999999888875
No 26
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=97.89 E-value=3.4e-05 Score=47.28 Aligned_cols=77 Identities=25% Similarity=0.321 Sum_probs=58.5
Q ss_pred cHHHHhhhcCCEEEEEEcCCcEEEEEEEEec-cccceEEcceEEEEEcc---CCe---eeEeeCeEEEcCCcEEEEEeCC
Q 041342 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFD-VYVNMVLEDVTEYEITA---EGR---RITKLDQILLNGNNIAILVPGG 82 (87)
Q Consensus 10 Pl~~L~~~l~k~V~V~l~dgr~~~G~L~~~D-~~mNlvL~~~~e~~~~~---~g~---~~~~~g~v~IRG~~I~~I~~~~ 82 (87)
|-..-..++|++|.+..+.+-.|+|+|..+| +..-+.|.|+.-+.++. ++. ...-+..++.||+.|..+...+
T Consensus 10 ~~~~~~~~IGs~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~~ipp~~~vyeyIvFrGsDIKDL~V~e 89 (95)
T 2fb7_A 10 DPSGGTPYIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSDIKDLTVCE 89 (95)
T ss_dssp ------CCSSEEEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSSCCCSCCCCSSCEEECSTTEEEEEESC
T ss_pred CCCccCcccCCeEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCCccCCCCcceeEEEEcCCCcceEEEec
Confidence 4445578999999999999999999999999 57888999987654321 110 2345689999999999999999
Q ss_pred CCCC
Q 041342 83 SPDP 86 (87)
Q Consensus 83 ~p~~ 86 (87)
.|++
T Consensus 90 ~p~~ 93 (95)
T 2fb7_A 90 PPKP 93 (95)
T ss_dssp CSCS
T ss_pred CCCC
Confidence 8876
No 27
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=97.56 E-value=0.00065 Score=41.04 Aligned_cols=69 Identities=25% Similarity=0.303 Sum_probs=55.0
Q ss_pred hhcCCEEEEEEcCCcEEEEEEEEec-cccceEEcceEEEEEcc-CCe-----eeEeeCeEEEcCCcEEEEEeCCCC
Q 041342 16 RCIGSKIWVIMKGDKELVGTLKGFD-VYVNMVLEDVTEYEITA-EGR-----RITKLDQILLNGNNIAILVPGGSP 84 (87)
Q Consensus 16 ~~l~k~V~V~l~dgr~~~G~L~~~D-~~mNlvL~~~~e~~~~~-~g~-----~~~~~g~v~IRG~~I~~I~~~~~p 84 (87)
.|+|++|.+..+.+-.|+|+|..+| +..-+.|.|+.-+.++. ... ...-+..++.||+.|..+...+..
T Consensus 10 ~yIGs~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~~~ipp~~~vy~yIvFrgsDIKdL~V~~~~ 85 (88)
T 2vxe_A 10 PELGSKISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSDIKDIRVVNNH 85 (88)
T ss_dssp CCTTCEEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCSSCCCCCCSCEEEEEEETTTEEEEEECCCC
T ss_pred cccCCeEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCCcccCCCCceeeEEEEccCCccEEEEeccC
Confidence 4799999999999999999999999 57889999998765421 000 234568999999999999876654
No 28
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=97.24 E-value=0.00047 Score=40.43 Aligned_cols=56 Identities=14% Similarity=0.303 Sum_probs=40.7
Q ss_pred HHHHhhhc--CCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEeCC
Q 041342 11 SELIDRCI--GSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 82 (87)
Q Consensus 11 l~~L~~~l--~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~~~ 82 (87)
-.+|+.+. ...|+|.|.+|..++|.+.+||+|+=++-++ ...+|--..|..|.+..
T Consensus 11 d~~L~~lrk~k~~Vti~L~nG~~l~G~I~~fD~f~vlL~~~----------------~~~LIYKhAIsTI~p~~ 68 (74)
T 2ylb_A 11 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNT----------------VSQMVYKHAISTVVPSR 68 (74)
T ss_dssp HHHHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEESS----------------SEEEEEGGGEEEEEESS
T ss_pred HHHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEECC----------------ceEEEEeeeEEEEeEcc
Confidence 34666666 5689999999999999999999998555322 24456666666666554
No 29
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=97.20 E-value=0.00052 Score=40.98 Aligned_cols=36 Identities=14% Similarity=0.303 Sum_probs=29.6
Q ss_pred HHHhhhc--CCEEEEEEcCCcEEEEEEEEeccccceEE
Q 041342 12 ELIDRCI--GSKIWVIMKGDKELVGTLKGFDVYVNMVL 47 (87)
Q Consensus 12 ~~L~~~l--~k~V~V~l~dgr~~~G~L~~~D~~mNlvL 47 (87)
.+|..+. ...|+|.|.||..++|.+.+||+|+=++-
T Consensus 10 ~fLn~lrk~~~~Vtv~L~NG~~l~G~I~~fD~ftVlL~ 47 (82)
T 1u1s_A 10 PYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLK 47 (82)
T ss_dssp HHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHHcCCcEEEEEeCCcEEEEEEEEEcceEEEEe
Confidence 3556555 56899999999999999999999986654
No 30
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=97.15 E-value=0.00044 Score=41.07 Aligned_cols=35 Identities=17% Similarity=0.376 Sum_probs=29.1
Q ss_pred HHHhhhcCC--EEEEEEcCCcEEEEEEEEeccccceE
Q 041342 12 ELIDRCIGS--KIWVIMKGDKELVGTLKGFDVYVNMV 46 (87)
Q Consensus 12 ~~L~~~l~k--~V~V~l~dgr~~~G~L~~~D~~mNlv 46 (87)
.+|..+..+ .|+|.|.+|..++|.+.+||+|+=++
T Consensus 11 ~fLn~lrk~k~~VtI~LvnG~~L~G~I~~fD~f~VlL 47 (79)
T 3sb2_A 11 PFLNALRKEHVPVSIYLVNGIKLQGHVESFDQYVVLL 47 (79)
T ss_dssp HHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred HHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEE
Confidence 466666654 69999999999999999999998665
No 31
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=97.14 E-value=0.0013 Score=38.78 Aligned_cols=37 Identities=14% Similarity=0.295 Sum_probs=30.6
Q ss_pred HHHhhhc--CCEEEEEEcCCcEEEEEEEEeccccceEEc
Q 041342 12 ELIDRCI--GSKIWVIMKGDKELVGTLKGFDVYVNMVLE 48 (87)
Q Consensus 12 ~~L~~~l--~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~ 48 (87)
.+|+.+. ...|+|.|.+|..++|.+.+||+|+=++-.
T Consensus 10 ~fLn~lrk~k~~VtI~L~nG~~l~G~I~~fD~f~VlL~~ 48 (77)
T 1kq1_A 10 KALENFKANQTEVTVFFLNGFQMKGVIEEYDKYVVSLNS 48 (77)
T ss_dssp HHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEEE
T ss_pred HHHHHHHhcCCeEEEEEeCCCEEEEEEEEECCcEEEEEE
Confidence 3566666 678999999999999999999999866543
No 32
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=97.11 E-value=0.0011 Score=39.29 Aligned_cols=35 Identities=20% Similarity=0.409 Sum_probs=29.2
Q ss_pred HHhhhc--CCEEEEEEcCCcEEEEEEEEeccccceEE
Q 041342 13 LIDRCI--GSKIWVIMKGDKELVGTLKGFDVYVNMVL 47 (87)
Q Consensus 13 ~L~~~l--~k~V~V~l~dgr~~~G~L~~~D~~mNlvL 47 (87)
+|..+. ...|+|.|.||..++|.+.+||+|+=++-
T Consensus 15 fLn~lrk~~~~Vtv~L~nG~~l~G~I~~fD~f~VlL~ 51 (78)
T 3ahu_A 15 FLNQIRKENTYVTVFLLNGFQLRGQVKGFDNFTVLLE 51 (78)
T ss_dssp HHHHHHHHTCCEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred HHHHHHHcCCcEEEEEeCCeEEEEEEEEEcceEEEEE
Confidence 455555 57899999999999999999999986654
No 33
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=97.05 E-value=0.0023 Score=38.28 Aligned_cols=65 Identities=14% Similarity=0.125 Sum_probs=53.6
Q ss_pred hhhcCCEEEEEEcCCc-EEEEEEEEecc-ccceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEeCCCCC
Q 041342 15 DRCIGSKIWVIMKGDK-ELVGTLKGFDV-YVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSPD 85 (87)
Q Consensus 15 ~~~l~k~V~V~l~dgr-~~~G~L~~~D~-~mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~~~~p~ 85 (87)
.+|+|+.|.+..+++- .|+|.|..+|+ ..||.|.+|. .+|- +.....+.+|+.-|..+..++.|+
T Consensus 5 ~~~iGs~VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f-----~NG~-~~~s~eVtls~~DI~~L~ii~~~~ 71 (84)
T 2vc8_A 5 TDWLGSIVSINCGDSLGVYQGRVSAVDQVSQTISLTRPF-----HNGV-KCLVPEVTFRAGDITELKILEIPG 71 (84)
T ss_dssp CTTTTCEEEEECCTTTCEEEEEEEEEETTTTEEEEEEEE-----ETTE-ECSSSEEEEEGGGCSEEEEEECCC
T ss_pred ccccCCEEEEEECCCceEEEEEEEEeccCCCeEEEehhh-----hCCC-CCCCcEEEEEecChhheEEEecCC
Confidence 4799999999999999 99999999996 4689999994 2664 334467999999888887777664
No 34
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=96.98 E-value=0.0017 Score=37.73 Aligned_cols=30 Identities=23% Similarity=0.380 Sum_probs=26.1
Q ss_pred CCEEEEEEcCCcEEEEEEEEeccccceEEc
Q 041342 19 GSKIWVIMKGDKELVGTLKGFDVYVNMVLE 48 (87)
Q Consensus 19 ~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~ 48 (87)
+..|+|.|.||..++|.+.+||+|+=++-.
T Consensus 25 ~~~Vtv~L~NG~~l~G~I~~fD~ftVll~~ 54 (71)
T 2qtx_A 25 GKKVKIFLRNGEVLDAEVTGVSNYEIMVKV 54 (71)
T ss_dssp TCEEEEEETTSCEEEEEEEEECSSEEEEEE
T ss_pred CCcEEEEEeCCeEEEEEEEEEcceEEEEEe
Confidence 458999999999999999999999866543
No 35
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=96.75 E-value=0.0055 Score=39.07 Aligned_cols=57 Identities=19% Similarity=0.230 Sum_probs=45.1
Q ss_pred HhhhcCCEEEEEEcCCcEEEEEEEEeccccceEE--cceEEEEEccCCeeeEeeCeEEEcCCcEEEEEeCCCC
Q 041342 14 IDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVL--EDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSP 84 (87)
Q Consensus 14 L~~~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL--~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~~~~p 84 (87)
..+|+|..|.|+|+||..++|++..+| --+|.| ++|..-+ .-|+...|.-+..++.|
T Consensus 7 ~sqFlGy~V~v~LkDgs~~qG~I~~vd-~k~LtL~~~~a~~s~-------------~~I~asdI~DLkVl~~~ 65 (125)
T 4a53_A 7 VADFYGSNVEVLLNNDSKARGVITNFD-SSNSILQLRLANDST-------------KSIVTKDIKDLRILPKN 65 (125)
T ss_dssp HHHHTTCEEEEEETTSCEEEEEEEEEE-TTTTEEEEEETTTEE-------------EEEEGGGEEEEEECCSC
T ss_pred HHHhcCceEEEEECCCCEeeEEEEeec-CCeeEEecccccccc-------------ceeecccccceeeeecc
Confidence 478999999999999999999999998 456777 8884321 17777778777766655
No 36
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=96.68 E-value=0.0024 Score=39.60 Aligned_cols=39 Identities=13% Similarity=0.316 Sum_probs=31.6
Q ss_pred HHHHhhhcCC--EEEEEEcCCcEEEEEEEEeccccceEEcc
Q 041342 11 SELIDRCIGS--KIWVIMKGDKELVGTLKGFDVYVNMVLED 49 (87)
Q Consensus 11 l~~L~~~l~k--~V~V~l~dgr~~~G~L~~~D~~mNlvL~~ 49 (87)
=.+|..+..+ .|+|.|.+|..++|++.+||+|+=++-++
T Consensus 11 d~fLn~lrk~k~~VtI~LvNG~~L~G~I~~fD~f~VlL~~~ 51 (104)
T 2y90_A 11 DPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNT 51 (104)
T ss_dssp HHHHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEEESS
T ss_pred HHHHHHHHhcCCcEEEEEeCCCEEEEEEEEECCcEEEEECC
Confidence 3466766665 79999999999999999999998666543
No 37
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=96.28 E-value=0.03 Score=32.51 Aligned_cols=64 Identities=16% Similarity=0.156 Sum_probs=44.3
Q ss_pred CCCCcCc-HHHHhhhcC--CEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEe
Q 041342 4 NPSQLLP-SELIDRCIG--SKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVP 80 (87)
Q Consensus 4 ~~~~~~P-l~~L~~~l~--k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~ 80 (87)
.-...+| ...|++++. ..|.|+|.+|..+.|.+.-+|+++=++-++. . ..++|.-..|.+|.+
T Consensus 5 ~fdt~lPsvR~lQ~~Ik~k~~V~I~L~tGd~l~G~i~WQD~~cl~L~~~~-~-------------~~~LI~R~AI~~Ikp 70 (72)
T 3hfn_A 5 EFDTSLPSIRQLQNLIKQAAPVEIKLVTGDAITGRVLWQDPTCVCIADEN-S-------------RQTTIWKQAIAYLQP 70 (72)
T ss_dssp ----CHHHHHHHHHHHSSCCEEEEEETTSCEEEEEEEEECSSEEEEEC-----------------CEEEEEGGGEEEEEE
T ss_pred ccCCCCCcHHHHHHHHhhCceEEEEecCCCEEEEEEEEECCCEEEEEcCC-C-------------CeEEEEeeeeEEEEe
Confidence 3366777 788999997 4699999999999999999999875544332 1 145666667777765
Q ss_pred C
Q 041342 81 G 81 (87)
Q Consensus 81 ~ 81 (87)
.
T Consensus 71 ~ 71 (72)
T 3hfn_A 71 K 71 (72)
T ss_dssp C
T ss_pred C
Confidence 3
No 38
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=95.90 E-value=0.026 Score=32.62 Aligned_cols=44 Identities=16% Similarity=0.111 Sum_probs=35.5
Q ss_pred CCCCcCc-HHHHhhhcC--CEEEEEEcCCcEEEEEEEEeccccceEE
Q 041342 4 NPSQLLP-SELIDRCIG--SKIWVIMKGDKELVGTLKGFDVYVNMVL 47 (87)
Q Consensus 4 ~~~~~~P-l~~L~~~l~--k~V~V~l~dgr~~~G~L~~~D~~mNlvL 47 (87)
.-.+.+| ...|++++. ..|.|+|.+|..+.|.+.-+|+|+=++-
T Consensus 3 ~fdt~lPsvR~lQ~~ik~k~~V~I~L~tG~~l~G~i~WQD~~cl~L~ 49 (70)
T 3hfo_A 3 RFDSGLPSVRQVQLLIKDQTPVEIKLLTGDSLFGTIRWQDTDGLGLV 49 (70)
T ss_dssp --CCSCHHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECSSEEEEE
T ss_pred cccCCCCcHHHHHHHHhhCceEEEEecCCCEEEEEEEEeCCCEEEEE
Confidence 4456677 778888885 5799999999999999999999875554
No 39
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=95.72 E-value=0.086 Score=30.01 Aligned_cols=60 Identities=27% Similarity=0.427 Sum_probs=41.2
Q ss_pred HHHhhhcCCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEE
Q 041342 12 ELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILV 79 (87)
Q Consensus 12 ~~L~~~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~ 79 (87)
..|.++.|++|-|-......|+|+|.-||+- -+.|+|++.+.. . +-..++++=+.|--|-
T Consensus 9 ktL~~WKg~rvAv~vg~ehSFtGiledFDeE-viLL~dV~D~~G----N---k~k~liv~idDinWim 68 (71)
T 1ycy_A 9 KVLKEWKGHKVAVSVGGDHSFTGTLEDFDEE-VILLKDVVDVIG----N---RGKQMLIGLEDINWIM 68 (71)
T ss_dssp HHHHHHTTSEEEEEEC----CEEEEEEECSS-EEEEEEEEETTE----E---EEEEEEEEGGGEEEEE
T ss_pred HHHHHhCCcEEEEEecCcceeeeehhhcCcc-eeehhhHHHHhc----c---ccceeEEEeccceEEE
Confidence 4688999999999999999999999999975 478899987642 2 1224555555554443
No 40
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=95.48 E-value=0.042 Score=32.83 Aligned_cols=62 Identities=11% Similarity=0.125 Sum_probs=49.7
Q ss_pred HHHHhhhcCCEEEEEEcCCcEEEEEEEEec-cccceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEe
Q 041342 11 SELIDRCIGSKIWVIMKGDKELVGTLKGFD-VYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVP 80 (87)
Q Consensus 11 l~~L~~~l~k~V~V~l~dgr~~~G~L~~~D-~~mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~ 80 (87)
|.+|....+++|.+.+.++....|++.++| ...|+..++-. + +=| .++..++|+.-|++++-
T Consensus 21 Lr~l~~m~~~~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~L~-T---PiG----v~~eAlLR~~Dii~~sF 83 (85)
T 1y96_B 21 LRSLLAMVGHQVSFTLHEGVRVAAHFGATDLDVANFYVSQLQ-T---PIG----VQAEALLRCSDIISYTF 83 (85)
T ss_dssp HHHHHHHTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEC-C---TTC----CEEEEEEEGGGEEEEEE
T ss_pred HHHHHHhCCCceEEEEeCCeEEEEEEEecCcccceeEhhhcC-C---Ccc----cchhhhhhcCCEEEEEe
Confidence 556778889999999999999999999999 47777766653 1 123 35789999999998874
No 41
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=93.16 E-value=0.86 Score=27.81 Aligned_cols=65 Identities=11% Similarity=0.121 Sum_probs=52.3
Q ss_pred hhhcCCEEEEEEcCCc-EEEEEEEEeccccceEEcceEEEEEccCCe-eeEeeCeEEEcCCcEEEEEeCCCCC
Q 041342 15 DRCIGSKIWVIMKGDK-ELVGTLKGFDVYVNMVLEDVTEYEITAEGR-RITKLDQILLNGNNIAILVPGGSPD 85 (87)
Q Consensus 15 ~~~l~k~V~V~l~dgr-~~~G~L~~~D~~mNlvL~~~~e~~~~~~g~-~~~~~g~v~IRG~~I~~I~~~~~p~ 85 (87)
.+|+|+-|.|.+.+.- .|+|.+...|+ .+|.|.+|.. +|- -+.....|.++..-|..+..++.++
T Consensus 8 edwiG~~VSI~C~d~LGVyQG~I~~V~~-~~ItL~kaFr-----NGiplk~~~~EVtLsa~DI~~L~IIe~~~ 74 (103)
T 2rm4_A 8 QDWIGCAVSIACDEVLGVFQGLIKQISA-EEITIVRAFR-----NGVPLRKQNAEVVLKCTDIRSIDLIEPAK 74 (103)
T ss_dssp GGGTTCEEEEEECTTTCEEEEEEEEEET-TEEEEEEEEE-----TTEECSCSSSCEEEETTTEEEEEEEECCC
T ss_pred cceeceEEEEeeCCcceEeeEEEEEccc-ceeEEhhhhh-----cCcCcCCCCceEEEEecchhheeeecccc
Confidence 4899999999999887 99999999995 4599999974 553 1235578889999898888777664
No 42
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=92.93 E-value=0.15 Score=35.69 Aligned_cols=34 Identities=26% Similarity=0.437 Sum_probs=30.2
Q ss_pred hcCCEEEEEEcCCcEEEEEEEEeccccceEEcce
Q 041342 17 CIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDV 50 (87)
Q Consensus 17 ~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~ 50 (87)
.+|++|+|...+|..+.|+..|+|+...|+|+..
T Consensus 222 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~v~~~ 255 (270)
T 3rux_A 222 TIGSRVRVELPGGQDVVGIARDIDDQGRLCLDVG 255 (270)
T ss_dssp STTSEEEEECTTSCEEEEEEEEECTTSCEEEEET
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEEEEEC
Confidence 3589999998889999999999999999999754
No 43
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=92.90 E-value=0.17 Score=29.06 Aligned_cols=53 Identities=13% Similarity=0.226 Sum_probs=33.3
Q ss_pred CCCCCcCcHHHHhhhcCCEEEEEEcCCcEEEEEEEEeccccceE-EcceEEEEE
Q 041342 3 HNPSQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMV-LEDVTEYEI 55 (87)
Q Consensus 3 ~~~~~~~Pl~~L~~~l~k~V~V~l~dgr~~~G~L~~~D~~mNlv-L~~~~e~~~ 55 (87)
++|+.-.|.---.=.++..|.++.+||+.|-|+++...+..=+| .+|-.+.|.
T Consensus 3 m~pp~~a~~pa~~~~~geDVL~rw~DG~fYLGtIVd~~~~~ClV~FeD~S~~Wv 56 (69)
T 2xk0_A 3 MAPPVAAPSPAVTYALQEDVFIKCNDGRFYLGTIIDQTSDQYLIRFDDQSEQWC 56 (69)
T ss_dssp SSCSSSSSCCCCCCCTTCEEEEECTTSCEEEEEEEEECSSCEEEEETTCCEEEE
T ss_pred CCCCCCCCCcccccccCCeEEEEecCCCEEEEEEEecCCceEEEEecCCcceee
Confidence 44544444322233467899999999999999996665433333 355555553
No 44
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=92.57 E-value=0.11 Score=35.63 Aligned_cols=47 Identities=17% Similarity=0.282 Sum_probs=33.8
Q ss_pred hcCCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEccCCeeeEeeCeEEEcC
Q 041342 17 CIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNG 72 (87)
Q Consensus 17 ~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG 72 (87)
.+|++|++...++ +.|+..++|+...|+++.. +|.+....|.|.+|+
T Consensus 186 ~~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~~-------~G~~~~~~Gev~~r~ 232 (233)
T 2eay_A 186 YLGEEVKLLGEGK--ITGKLVGLSEKGGALILTE-------EGIKEILSGEFSLRR 232 (233)
T ss_dssp TTTSEEEETTEEE--EEEEEEEECTTSCEEEEET-------TEEEEECSCCEEEC-
T ss_pred ccCCEEEEEECCe--EEEEEEEECCCCeEEEEEC-------CCeEEEEEeEEEEec
Confidence 3689999976654 9999999999999999753 222223456777764
No 45
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=92.28 E-value=0.12 Score=33.98 Aligned_cols=44 Identities=23% Similarity=0.339 Sum_probs=32.1
Q ss_pred CCCCCcCcHH---HHhhhcCCEEEEEEc----CCcEEEEEEEEeccccceEE
Q 041342 3 HNPSQLLPSE---LIDRCIGSKIWVIMK----GDKELVGTLKGFDVYVNMVL 47 (87)
Q Consensus 3 ~~~~~~~Pl~---~L~~~l~k~V~V~l~----dgr~~~G~L~~~D~~mNlvL 47 (87)
++|=...||. .+.+++|+.|.|+++ +.+.++|+|.++|.- .+.|
T Consensus 85 SSPGldRpL~~~~df~r~~G~~V~V~l~~~~~g~k~~~G~L~~~~~~-~v~l 135 (164)
T 1ib8_A 85 TSPGLERPLKTKDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEED-ELTM 135 (164)
T ss_dssp ECCSSSSCCSSHHHHHHHCSEEEEEECSSCSSSCSEEEEEEEEEETT-EEEE
T ss_pred eCCCCCCCCCCHHHHHHhCCcEEEEEEecccCCceEEEEEEEEEeCC-EEEE
Confidence 3555555644 456789999999994 458999999999964 3444
No 46
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=91.81 E-value=0.43 Score=33.89 Aligned_cols=48 Identities=25% Similarity=0.263 Sum_probs=35.0
Q ss_pred hcCCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEccCCeeeEeeCeEEEcC
Q 041342 17 CIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNG 72 (87)
Q Consensus 17 ~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG 72 (87)
.+|++|+|... +..+.|+..|+|....|+++.. +|......|.|.+|+
T Consensus 271 ~~g~~V~v~~~-~~~~~G~~~gid~~G~L~v~~~-------~g~~~~~~Gev~~r~ 318 (321)
T 1bia_A 271 FINRPVKLIIG-DKEIFGISRGIDKQGALLLEQD-------GIIKPWMGGEISLRS 318 (321)
T ss_dssp TTTSEEEEEET-TEEEEEEEEEECTTSCEEEEET-------TEEEEESSCEEEEC-
T ss_pred hcCCEEEEEEC-CcEEEEEEEEECCCCeEEEEEC-------CCEEEEEeeeEEEec
Confidence 46899999876 4589999999999999999743 222233456777764
No 47
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=91.08 E-value=0.59 Score=31.92 Aligned_cols=32 Identities=13% Similarity=0.314 Sum_probs=28.2
Q ss_pred hcCCEEEEEEcCCcEEEEEEEEeccccceEEcc
Q 041342 17 CIGSKIWVIMKGDKELVGTLKGFDVYVNMVLED 49 (87)
Q Consensus 17 ~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~ 49 (87)
.+|++|+|...++..+.|+..|+|....|+ +.
T Consensus 190 ~~g~~V~v~~~~~~~~~G~~~gId~~G~L~-~~ 221 (237)
T 2ej9_A 190 TIGKQVKILLSNNEIITGKVYDIDFDGIVL-GT 221 (237)
T ss_dssp STTCEEEEEETTSCEEEEEEEEECSSEEEE-EE
T ss_pred ccCCEEEEEECCCeEEEEEEEEECCCCeEE-Ec
Confidence 468999999988777999999999999998 64
No 48
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=88.68 E-value=0.26 Score=33.74 Aligned_cols=31 Identities=13% Similarity=0.367 Sum_probs=24.3
Q ss_pred cCCEEEEEEcCCcEEEEEEEEeccccceEEcce
Q 041342 18 IGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDV 50 (87)
Q Consensus 18 l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~ 50 (87)
+|++|++...++ +.|+..++|+...|+++..
T Consensus 188 ~g~~V~v~~~~~--~~G~~~gId~~G~L~v~~~ 218 (235)
T 2dxu_A 188 LGVRVKILGDGS--FEGIAEDIDDFGRLIIRLD 218 (235)
T ss_dssp CSSEEEC----C--CEEEEEEECTTSCEEEECT
T ss_pred cCCeEEEEECCe--EEEEEEEECCCCEEEEEEC
Confidence 689999988766 9999999999999999753
No 49
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=85.67 E-value=1.3 Score=24.45 Aligned_cols=37 Identities=19% Similarity=0.223 Sum_probs=27.5
Q ss_pred cCCEEEEEEcCCcEEEEEEEEecccc---ceEEcceEEEE
Q 041342 18 IGSKIWVIMKGDKELVGTLKGFDVYV---NMVLEDVTEYE 54 (87)
Q Consensus 18 l~k~V~V~l~dgr~~~G~L~~~D~~m---NlvL~~~~e~~ 54 (87)
.|..|.++-+||+.|-|++..+|..- =+...|-.+.+
T Consensus 6 ~GedVLarwsDG~fYlGtI~~V~~~~~~clV~F~D~s~~W 45 (58)
T 4hcz_A 6 EGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFL 45 (58)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETTTTEEEEEETTSCEEE
T ss_pred cCCEEEEEecCCCEEeEEEEEEecCCCEEEEEEcCCCeEE
Confidence 36789999999999999999998653 33334554444
No 50
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=84.43 E-value=2 Score=25.90 Aligned_cols=26 Identities=12% Similarity=0.248 Sum_probs=21.0
Q ss_pred HHHHhhhcC--CEEEEEEcCCcEEEEEE
Q 041342 11 SELIDRCIG--SKIWVIMKGDKELVGTL 36 (87)
Q Consensus 11 l~~L~~~l~--k~V~V~l~dgr~~~G~L 36 (87)
|+-|...++ .+|.+++.||+.+.||+
T Consensus 18 Le~~~~~LdGq~~v~i~l~DGs~l~GTv 45 (101)
T 2e12_A 18 LEHWVKLLDGQERVRIELDDGSMIAGTV 45 (101)
T ss_dssp HHHHHHTSCTTCEEEEEETTSCEEEEEE
T ss_pred HHHHHHhhCCeeEEEEEEcCCCeEeeee
Confidence 445555565 58999999999999998
No 51
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=82.93 E-value=2.1 Score=30.57 Aligned_cols=33 Identities=15% Similarity=0.205 Sum_probs=27.0
Q ss_pred hcCCEEEEEEcCCcEEEEEEEEeccccceEEcce
Q 041342 17 CIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDV 50 (87)
Q Consensus 17 ~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~ 50 (87)
.+|++|+|... +..+.|+..|+|+...|+++..
T Consensus 277 ~~g~~V~v~~~-~~~~~G~~~gId~~G~Llv~~~ 309 (323)
T 3rkx_A 277 IWNRTLLFTEN-DKQFKGQAIDLDYDGYLIVRDE 309 (323)
T ss_dssp CSSSCEEEECC--CEEEEEEEEECTTSCEEEEET
T ss_pred hcCCEEEEEEC-CeEEEEEEEEECCCCEEEEEEC
Confidence 45789999765 5689999999999999999643
No 52
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=78.35 E-value=3.2 Score=28.02 Aligned_cols=29 Identities=28% Similarity=0.300 Sum_probs=24.8
Q ss_pred hcCCEEEEEEcCCcEEEEEEEEeccccceEEcce
Q 041342 17 CIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDV 50 (87)
Q Consensus 17 ~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~ 50 (87)
.+|++|+| +| +.|+..|+|....|+++..
T Consensus 192 ~~g~~V~v---~~--~~G~~~gId~~G~L~v~~~ 220 (235)
T 3bfm_A 192 GMGEARTE---AG--RSGTFLGVDEDFGMLLRDE 220 (235)
T ss_dssp TTTSEEEE---TT--EEEEEEEECTTCCEEEECS
T ss_pred hcCCEEEE---Ee--EEEEEEEECCCCeEEEEeC
Confidence 46899999 45 9999999999999999643
No 53
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=73.29 E-value=5.8 Score=22.37 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=22.2
Q ss_pred cCCEEEEEEcCCcEEEEEEEEeccc
Q 041342 18 IGSKIWVIMKGDKELVGTLKGFDVY 42 (87)
Q Consensus 18 l~k~V~V~l~dgr~~~G~L~~~D~~ 42 (87)
.|..|+..-.||+.|.|++..+|+.
T Consensus 16 vGddVLA~wtDGl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 16 EGQDVLARWSDGLFYLGTIKKINIL 40 (66)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEETT
T ss_pred CCCEEEEEEccCcEEEeEEEEEccC
Confidence 4678899999999999999999974
No 54
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=72.34 E-value=2.9 Score=24.37 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=28.2
Q ss_pred hcCCEEEEEEcCCcEEEEEEEEeccc---cceEEcceEEEE
Q 041342 17 CIGSKIWVIMKGDKELVGTLKGFDVY---VNMVLEDVTEYE 54 (87)
Q Consensus 17 ~l~k~V~V~l~dgr~~~G~L~~~D~~---mNlvL~~~~e~~ 54 (87)
..|..|.++-+||+.|-|++..+|.. +=+..+|-.+.|
T Consensus 28 ~eGeDVLarwsDGlfYLGTI~kV~~~~e~ClV~F~D~S~~W 68 (79)
T 2m0o_A 28 WEGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFL 68 (79)
T ss_dssp CTTCEEEBCCTTSCCCEEEEEEEETTTTEEEEEETTSCEEE
T ss_pred ccCCEEEEEecCCCEEeEEEEEeccCCCEEEEEEcCCCeEE
Confidence 35788999999999999999998864 333445555444
No 55
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=71.91 E-value=5.2 Score=24.97 Aligned_cols=32 Identities=9% Similarity=0.154 Sum_probs=24.9
Q ss_pred hcCCEEEEEEcCCcEEEEEEEEecc--ccceEEc
Q 041342 17 CIGSKIWVIMKGDKELVGTLKGFDV--YVNMVLE 48 (87)
Q Consensus 17 ~l~k~V~V~l~dgr~~~G~L~~~D~--~mNlvL~ 48 (87)
.+|.+|+.+-++||.|.|++.+... |..+.++
T Consensus 7 ~vGq~V~akh~ngryy~~~V~~~~~~~~y~V~F~ 40 (118)
T 2qqr_A 7 TAGQKVISKHKNGRFYQCEVVRLTTETFYEVNFD 40 (118)
T ss_dssp CTTCEEEEECTTSSEEEEEEEEEEEEEEEEEEET
T ss_pred ccCCEEEEECCCCCEEeEEEEEEeeEEEEEEEcC
Confidence 3689999999999999999988763 4444443
No 56
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=63.25 E-value=11 Score=27.50 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=27.3
Q ss_pred CEEEEEEcCCcEEEEEEEEeccccceEEcce
Q 041342 20 SKIWVIMKGDKELVGTLKGFDVYVNMVLEDV 50 (87)
Q Consensus 20 k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~ 50 (87)
.++.|.+.||+.+.+++.++|...+|.|=..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAllkv 118 (436)
T 4a8c_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (436)
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 4799999999999999999999988877544
No 57
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=62.37 E-value=12 Score=27.63 Aligned_cols=31 Identities=16% Similarity=0.250 Sum_probs=27.0
Q ss_pred CEEEEEEcCCcEEEEEEEEeccccceEEcce
Q 041342 20 SKIWVIMKGDKELVGTLKGFDVYVNMVLEDV 50 (87)
Q Consensus 20 k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~ 50 (87)
.++.|.+.||+.+.+++.++|....|.|=..
T Consensus 111 ~~i~V~~~dg~~~~a~vv~~d~~~DlAvlkv 141 (448)
T 1ky9_A 111 TVIKVQLSDGRKFDAKMVGKDPRSDIALIQI 141 (448)
T ss_dssp EEEEEEETTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEEcCCCCEEEEEe
Confidence 3789999999999999999999998876544
No 58
>3fb9_A Uncharacterized protein; unknown function, structural genomics, MCSG, PSI2, protein S initiative; 1.80A {Streptococcus pneumoniae}
Probab=62.07 E-value=16 Score=21.74 Aligned_cols=28 Identities=18% Similarity=0.254 Sum_probs=23.4
Q ss_pred HHHhhhcCCEEEEEEcCCc----EEEEEEEEe
Q 041342 12 ELIDRCIGSKIWVIMKGDK----ELVGTLKGF 39 (87)
Q Consensus 12 ~~L~~~l~k~V~V~l~dgr----~~~G~L~~~ 39 (87)
..|..++|++|.++.+.|| +-.|+|...
T Consensus 18 ~~l~~~vG~~V~l~An~GRkK~~er~GvL~et 49 (90)
T 3fb9_A 18 EEIKAHEGQVVEMTLENGRKRQKNRLGKLIEV 49 (90)
T ss_dssp HHHHHTTTSEEEEEECCSSSCCSCEEEEEEEE
T ss_pred HHHHHcCCCEEEEEecCCcccEEEEEEEEEEe
Confidence 3578899999999999999 468999754
No 59
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.45 E-value=14 Score=20.55 Aligned_cols=37 Identities=16% Similarity=0.188 Sum_probs=28.4
Q ss_pred cCCEEEEEEcCCcEEEEEEEEeccc---cceEEcceEEEE
Q 041342 18 IGSKIWVIMKGDKELVGTLKGFDVY---VNMVLEDVTEYE 54 (87)
Q Consensus 18 l~k~V~V~l~dgr~~~G~L~~~D~~---mNlvL~~~~e~~ 54 (87)
.+..|..+-+||+.|-|++...|.. +=+...|..+.+
T Consensus 10 eGqdVLarWsDGlfYlgtV~kV~~~~~~ClV~FeD~s~~w 49 (63)
T 2e5q_A 10 EGQYVLCRWTDGLYYLGKIKRVSSSKQSCLVTFEDNSKYW 49 (63)
T ss_dssp TTCEEEEECTTSCEEEEEECCCCSTTSEEEEEETTSCEEE
T ss_pred cCCEEEEEecCCCEEEEEEEEEecCCCEEEEEEccCceeE
Confidence 4678999999999999999999954 444445665555
No 60
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.86 E-value=17 Score=20.54 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=28.0
Q ss_pred cCCEEEEEEcCCcEEEEEEEEeccc---cceEEcceEEEE
Q 041342 18 IGSKIWVIMKGDKELVGTLKGFDVY---VNMVLEDVTEYE 54 (87)
Q Consensus 18 l~k~V~V~l~dgr~~~G~L~~~D~~---mNlvL~~~~e~~ 54 (87)
.+..|..+-+||+.|-|++...|.+ .=+...|..+.+
T Consensus 12 eGqdVLarWsDGlfYlGtV~kV~~~~~~ClV~FeD~s~~w 51 (68)
T 2e5p_A 12 EGQDVLARWTDGLLYLGTIKKVDSAREVCLVQFEDDSQFL 51 (68)
T ss_dssp TTCEEEEECTTSSEEEEEEEEEETTTTEEEEEETTTEEEE
T ss_pred cCCEEEEEecCCcEEEeEEEEEecCCcEEEEEEccCCeee
Confidence 4678999999999999999999954 333445665555
No 61
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=54.57 E-value=17 Score=25.79 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=26.4
Q ss_pred CEEEEEEcCCcEEEEEEEEeccccceEEcce
Q 041342 20 SKIWVIMKGDKELVGTLKGFDVYVNMVLEDV 50 (87)
Q Consensus 20 k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~ 50 (87)
.++.|.+.||+.+.+.+.++|....|.|=..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (345)
T 3stj_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (345)
T ss_dssp EEEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEeCCCcEEEEEEEEEcCCCCEEEEEE
Confidence 3688999999999999999999888776443
No 62
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=51.35 E-value=15 Score=27.06 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=26.9
Q ss_pred CEEEEEEcCCcEEEEEEEEeccccceEEcce
Q 041342 20 SKIWVIMKGDKELVGTLKGFDVYVNMVLEDV 50 (87)
Q Consensus 20 k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~ 50 (87)
.++.|.+.||+.+.+.+.++|...+|.|=..
T Consensus 102 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 132 (451)
T 3pv2_A 102 SLITVTLQDGRRLKARLIGGDSETDLAVLKI 132 (451)
T ss_dssp EEEEEECTTSCEEECEEEEEETTTTEEEEEC
T ss_pred CEEEEEEcCCCEEEEEEEecCcCCcEEEEEE
Confidence 3689999999999999999999988877544
No 63
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=49.32 E-value=19 Score=24.32 Aligned_cols=31 Identities=23% Similarity=0.323 Sum_probs=25.7
Q ss_pred CEEEEEEcCCcEEEEEEEEeccccceEEcce
Q 041342 20 SKIWVIMKGDKELVGTLKGFDVYVNMVLEDV 50 (87)
Q Consensus 20 k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~ 50 (87)
.++.|.+.||+.+.+.+.+.|....|.|=..
T Consensus 88 ~~i~V~~~dg~~~~a~vv~~d~~~DlAlLkv 118 (245)
T 3sti_A 88 QKISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (245)
T ss_dssp -CEEEECTTSCEEEEEEEEEETTTTEEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCEEEEEe
Confidence 4688999999999999999999887766443
No 64
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=47.65 E-value=29 Score=22.86 Aligned_cols=30 Identities=17% Similarity=0.288 Sum_probs=26.0
Q ss_pred CEEEEEEcCCcEEEEEEEEeccccceEEcc
Q 041342 20 SKIWVIMKGDKELVGTLKGFDVYVNMVLED 49 (87)
Q Consensus 20 k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~ 49 (87)
.++.|.+.+|+.+.+.+.++|....|-|=.
T Consensus 77 ~~~~V~~~~g~~~~a~vv~~d~~~DlAll~ 106 (237)
T 3lgi_A 77 DQIIVALQDGRVFEALLVGSDSLTDLAVLK 106 (237)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEeCCCCEEEEEEEEEcCCCCEEEEE
Confidence 578999999999999999999988876643
No 65
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=47.29 E-value=7.3 Score=24.09 Aligned_cols=25 Identities=12% Similarity=0.315 Sum_probs=19.0
Q ss_pred CCCCCCCcCcHHHHhhhcCCEEEEE
Q 041342 1 MAHNPSQLLPSELIDRCIGSKIWVI 25 (87)
Q Consensus 1 ~~~~~~~~~Pl~~L~~~l~k~V~V~ 25 (87)
||..|.+.---+.|.+|.|++|++.
T Consensus 4 ~m~~p~pRVn~s~L~~fvgk~Vriv 28 (121)
T 3kdf_A 4 MMDLPRSRINAGMLAQFIDKPVCFV 28 (121)
T ss_dssp GGGSCCEEECGGGGGGGTTCEEEEE
T ss_pred cccCCcceECHHHHHhhCCCeEEEE
Confidence 4556666556778999999999874
No 66
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=47.09 E-value=1.2 Score=27.20 Aligned_cols=19 Identities=32% Similarity=0.244 Sum_probs=16.9
Q ss_pred EEEEEEeccccceEEcceE
Q 041342 33 VGTLKGFDVYVNMVLEDVT 51 (87)
Q Consensus 33 ~G~L~~~D~~mNlvL~~~~ 51 (87)
.|++.+||.-.|+.|++|.
T Consensus 34 ~~~~~~FDk~TNl~LEeA~ 52 (99)
T 1x4r_A 34 KNITQCFDKMTNMKLEVAW 52 (99)
T ss_dssp SSCEEECCTTHHHHHHHHH
T ss_pred CCeEeechHHHHHHHHHHH
Confidence 3668999999999999986
No 67
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=46.62 E-value=31 Score=22.76 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=26.5
Q ss_pred CEEEEEEcCCcEEEEEEEEeccccceEEcce
Q 041342 20 SKIWVIMKGDKELVGTLKGFDVYVNMVLEDV 50 (87)
Q Consensus 20 k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~ 50 (87)
.++.|.+.+|+.+.+.+.++|....|-|=..
T Consensus 87 ~~i~V~~~~g~~~~a~v~~~d~~~DlAlL~l 117 (231)
T 3tjo_A 87 HRVKVELKNGATYEAKIKDVDEKADIALIKI 117 (231)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred ceEEEEcCCCCEEEEEEEEecCCCCEEEEEe
Confidence 5789999999999999999999888776443
No 68
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=46.46 E-value=29 Score=24.15 Aligned_cols=31 Identities=6% Similarity=0.143 Sum_probs=26.4
Q ss_pred CEEEEEEcCCcEEEEEEEEeccccceEEcce
Q 041342 20 SKIWVIMKGDKELVGTLKGFDVYVNMVLEDV 50 (87)
Q Consensus 20 k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~ 50 (87)
.++.|.+.+|+.+.+++.++|....|-|=..
T Consensus 71 ~~i~V~~~~g~~~~a~v~~~d~~~DlAllkl 101 (325)
T 1lcy_A 71 RRVRVRLLSGDTYEAVVTAVDPVADIATLRI 101 (325)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEEEECCCCCEEEEEE
Confidence 4789999999999999999998888776443
No 69
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=45.44 E-value=27 Score=24.10 Aligned_cols=31 Identities=19% Similarity=0.145 Sum_probs=26.5
Q ss_pred CEEEEEEcCCcEEEEEEEEeccccceEEcce
Q 041342 20 SKIWVIMKGDKELVGTLKGFDVYVNMVLEDV 50 (87)
Q Consensus 20 k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~ 50 (87)
.++.|.+.||+.+.+.+.++|...+|-|=..
T Consensus 64 ~~i~V~~~~g~~~~a~vv~~d~~~DlAllkl 94 (324)
T 1y8t_A 64 PKTTVTFSDGRTAPFTVVGADPTSDIAVVRV 94 (324)
T ss_dssp CEEEEEETTCCEECEEEEECCTTTTEEEEEE
T ss_pred eEEEEEeCCCCEEEEEEEEeCCCCCEEEEEE
Confidence 4899999999999999999999888776433
No 70
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=45.39 E-value=30 Score=23.94 Aligned_cols=31 Identities=16% Similarity=0.266 Sum_probs=26.4
Q ss_pred CEEEEEEcCCcEEEEEEEEeccccceEEcce
Q 041342 20 SKIWVIMKGDKELVGTLKGFDVYVNMVLEDV 50 (87)
Q Consensus 20 k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~ 50 (87)
.++.|.+.+|+.+.+.+.++|...+|.|=..
T Consensus 66 ~~i~V~~~~g~~~~a~v~~~d~~~DlAllk~ 96 (318)
T 1te0_A 66 DQIIVALQDGRVFEALLVGSDSLTDLAVLII 96 (318)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEEEC
T ss_pred CEEEEEeCCCCEEEEEEEEeCCCceEEEEEE
Confidence 4689999999999999999999888877544
No 71
>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}
Probab=43.41 E-value=32 Score=21.47 Aligned_cols=23 Identities=17% Similarity=0.047 Sum_probs=20.8
Q ss_pred cCCEEEEEEcCCcEEEEEEEEec
Q 041342 18 IGSKIWVIMKGDKELVGTLKGFD 40 (87)
Q Consensus 18 l~k~V~V~l~dgr~~~G~L~~~D 40 (87)
.|..|.|.-.||..|.|++.|.-
T Consensus 67 ~G~~V~V~W~DG~~y~a~f~g~~ 89 (123)
T 2xdp_A 67 EGEVVQVKWPDGKLYGAKYFGSN 89 (123)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEE
T ss_pred CCCEEEEEcCCCCEEeEEEeeee
Confidence 46799999999999999999975
No 72
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}
Probab=40.34 E-value=41 Score=23.59 Aligned_cols=31 Identities=16% Similarity=0.302 Sum_probs=26.5
Q ss_pred CEEEEEEcCCcEEEEEEEEeccccceEEcce
Q 041342 20 SKIWVIMKGDKELVGTLKGFDVYVNMVLEDV 50 (87)
Q Consensus 20 k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~ 50 (87)
.++.|.+.+|+.+.+.+.++|....|-|=..
T Consensus 77 ~~i~V~~~~g~~~~a~~v~~d~~~DlAlLkl 107 (348)
T 3qo6_A 77 SDLRVTLADQTTFDAKVVGFDQDKDVAVLRI 107 (348)
T ss_dssp SEEEEECTTSCEEEEEEEEEEGGGTEEEEEC
T ss_pred cEEEEEECCCCEEEEEEEEEcCcCCEEEEEE
Confidence 5789999999999999999999888776433
No 73
>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.04 E-value=49 Score=18.57 Aligned_cols=25 Identities=4% Similarity=0.074 Sum_probs=21.6
Q ss_pred cCCEEEEEEcCCcEEEEEEEEeccc
Q 041342 18 IGSKIWVIMKGDKELVGTLKGFDVY 42 (87)
Q Consensus 18 l~k~V~V~l~dgr~~~G~L~~~D~~ 42 (87)
.|..+.-+-.||..|.+++.+++..
T Consensus 12 vGd~clA~wsDg~~Y~A~I~~v~~~ 36 (74)
T 2equ_A 12 AGEEVLARWTDCRYYPAKIEAINKE 36 (74)
T ss_dssp TTCEEEEECSSSSEEEEEEEEESTT
T ss_pred CCCEEEEECCCCCEEEEEEEEECCC
Confidence 4778888888999999999999863
No 74
>1sg5_A ORF, hypothetical protein; A+B protein, montreal-kingston bacterial structural genomics initiative, BSGI, structural genomics, transcription; NMR {Escherichia coli} SCOP: b.137.1.2
Probab=39.60 E-value=9.4 Score=22.33 Aligned_cols=20 Identities=10% Similarity=-0.007 Sum_probs=16.5
Q ss_pred hcCCEEEEEEcCCcEEEEEE
Q 041342 17 CIGSKIWVIMKGDKELVGTL 36 (87)
Q Consensus 17 ~l~k~V~V~l~dgr~~~G~L 36 (87)
..+..+.|+++||..+.|+.
T Consensus 23 ~~~~~l~l~l~dGe~~~g~a 42 (86)
T 1sg5_A 23 QHHLMLTLELKDGEKLQAKA 42 (86)
T ss_dssp TTTTCEEEECTTTCCEEESS
T ss_pred HcCCeEEEEEeCCCEEEEEE
Confidence 34678999999999998854
No 75
>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*
Probab=39.38 E-value=40 Score=20.82 Aligned_cols=23 Identities=9% Similarity=-0.020 Sum_probs=20.5
Q ss_pred cCCEEEEEEcCCcEEEEEEEEec
Q 041342 18 IGSKIWVIMKGDKELVGTLKGFD 40 (87)
Q Consensus 18 l~k~V~V~l~dgr~~~G~L~~~D 40 (87)
.|..|.|.-.||..|.++..|.-
T Consensus 66 ~G~~V~V~W~DG~~y~a~f~g~~ 88 (118)
T 2qqr_A 66 EGEVVQVRWTDGQVYGAKFVASH 88 (118)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEE
T ss_pred CCCEEEEEcCCCCEeeeEEecee
Confidence 46799999999999999999864
No 76
>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}
Probab=38.79 E-value=51 Score=18.31 Aligned_cols=25 Identities=4% Similarity=0.020 Sum_probs=21.9
Q ss_pred cCCEEEEEEcCCcEEEEEEEEeccc
Q 041342 18 IGSKIWVIMKGDKELVGTLKGFDVY 42 (87)
Q Consensus 18 l~k~V~V~l~dgr~~~G~L~~~D~~ 42 (87)
+|.+|..+-.|++.|.+++.+++..
T Consensus 9 vGd~vmArW~D~~yYpA~I~si~~~ 33 (67)
T 3p8d_A 9 INEQVLACWSDCRFYPAKVTAVNKD 33 (67)
T ss_dssp TTCEEEEECTTSCEEEEEEEEECTT
T ss_pred cCCEEEEEcCCCCEeeEEEEEECCC
Confidence 5678888889999999999999975
No 77
>2wr8_A Putative uncharacterized protein PH0463; transferase, SAM, SAM hydroxide adenosyltransferase (DUF-62) water activation; HET: SAH; 1.77A {Pyrococcus horikoshii} PDB: 1wu8_A*
Probab=38.38 E-value=29 Score=24.17 Aligned_cols=20 Identities=15% Similarity=0.177 Sum_probs=17.4
Q ss_pred CcEEEEEEEEeccccceEEc
Q 041342 29 DKELVGTLKGFDVYVNMVLE 48 (87)
Q Consensus 29 gr~~~G~L~~~D~~mNlvL~ 48 (87)
+..++|.+.-+|.|.|++..
T Consensus 171 ~~~i~g~V~~iD~FGN~iTn 190 (259)
T 2wr8_A 171 GDVWILKVIYIDDFGNVILN 190 (259)
T ss_dssp TTEEEEEEEEECTTCCEEES
T ss_pred CCeEEEEEEEEcccCChhhc
Confidence 45789999999999999764
No 78
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A
Probab=37.32 E-value=59 Score=22.53 Aligned_cols=30 Identities=17% Similarity=0.236 Sum_probs=26.0
Q ss_pred CEEEEEEcCCcEEEEEEEEeccccceEEcc
Q 041342 20 SKIWVIMKGDKELVGTLKGFDVYVNMVLED 49 (87)
Q Consensus 20 k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~ 49 (87)
.++.|.+.+|+.+.+.+.++|....|-|=.
T Consensus 70 ~~i~V~~~~g~~~~a~~~~~d~~~DlAlL~ 99 (332)
T 3num_A 70 HRVKVELKNGATYEAKIKDVDEKADIALIK 99 (332)
T ss_dssp SEEEEEETTSCEEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEecCCCCeEEEE
Confidence 578999999999999999999988876643
No 79
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}
Probab=37.05 E-value=34 Score=26.18 Aligned_cols=30 Identities=17% Similarity=0.202 Sum_probs=25.3
Q ss_pred CEEEEEEc-CCcEEEEEEEEeccccceEEcc
Q 041342 20 SKIWVIMK-GDKELVGTLKGFDVYVNMVLED 49 (87)
Q Consensus 20 k~V~V~l~-dgr~~~G~L~~~D~~mNlvL~~ 49 (87)
.+|.|.+. ||+.|.+++.++|....|-|=.
T Consensus 97 ~~i~V~~~~dg~~~~A~vv~~D~~~DLAvLk 127 (539)
T 4fln_A 97 TQVKVKRRGDDRKYVAKVLVRGVDCDIALLS 127 (539)
T ss_dssp EEEEEECTTCCCCEEEEEEEEETTTTEEEEE
T ss_pred CeEEEEEccCCEEEEEEEEEECCCCCEEEEE
Confidence 46888885 9999999999999998887643
No 80
>2zbv_A Uncharacterized conserved protein; NPPSFA, national project protein structural and functional analyses; HET: ADN; 2.05A {Thermotoga maritima} PDB: 2zbu_A*
Probab=36.95 E-value=31 Score=24.04 Aligned_cols=20 Identities=15% Similarity=0.393 Sum_probs=17.3
Q ss_pred CcEEEEEEEEeccccceEEc
Q 041342 29 DKELVGTLKGFDVYVNMVLE 48 (87)
Q Consensus 29 gr~~~G~L~~~D~~mNlvL~ 48 (87)
+..++|.+.-+|.|.|++..
T Consensus 167 ~~~i~g~V~~iD~FGN~iTn 186 (263)
T 2zbv_A 167 NEKVIGEVAIVDTFGNVSTN 186 (263)
T ss_dssp TTEEEEEEEEECTTCCEEEE
T ss_pred CCeEEEEEEEEcccCChhhc
Confidence 45789999999999999754
No 81
>3tee_A Flagella basal BODY P-ring formation protein FLGA; chaperone, flagellar P-ring formation, flagellar FLGI protei periplasmic protein; 1.95A {Salmonella typhimurium}
Probab=36.77 E-value=24 Score=23.73 Aligned_cols=22 Identities=18% Similarity=0.305 Sum_probs=18.4
Q ss_pred hcCCEEEEEEcCCcEEEEEEEE
Q 041342 17 CIGSKIWVIMKGDKELVGTLKG 38 (87)
Q Consensus 17 ~l~k~V~V~l~dgr~~~G~L~~ 38 (87)
.+|..|+|+...|+.+.|++.+
T Consensus 169 ~~Gd~IrVr~~Sgkiv~g~V~~ 190 (219)
T 3tee_A 169 AVAQNARVRMTSGQIVSGTVDS 190 (219)
T ss_dssp CTTSEEEEEETTSCEEEEEECT
T ss_pred CCCCEEEEECCCCCEEEEEEec
Confidence 4678899999899999998764
No 82
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=35.05 E-value=27 Score=19.54 Aligned_cols=21 Identities=10% Similarity=0.014 Sum_probs=17.8
Q ss_pred EEEEEEcCCcEEEEEEEEecc
Q 041342 21 KIWVIMKGDKELVGTLKGFDV 41 (87)
Q Consensus 21 ~V~V~l~dgr~~~G~L~~~D~ 41 (87)
+|.|++.||..+.+++..-|.
T Consensus 9 ~i~iRlpdG~r~~~~F~~~~t 29 (84)
T 3qx1_A 9 KLRIRTPSGEFLERRFLASNK 29 (84)
T ss_dssp EEEEECTTSCEEEEEEETTSB
T ss_pred EEEEECCCCCEEEEEeCCCCC
Confidence 688999999999999876654
No 83
>3hpa_A Amidohydrolase; signature of Zn ligands, structural genomics, NYSGXRC, target 9236E, PSI-2, protein structure initiative; 2.20A {Unidentified}
Probab=34.17 E-value=78 Score=21.71 Aligned_cols=38 Identities=13% Similarity=0.247 Sum_probs=24.4
Q ss_pred cceEEcceEEEEEccCC-eeeEeeCeEEEcCCcEEEEEeC
Q 041342 43 VNMVLEDVTEYEITAEG-RRITKLDQILLNGNNIAILVPG 81 (87)
Q Consensus 43 mNlvL~~~~e~~~~~~g-~~~~~~g~v~IRG~~I~~I~~~ 81 (87)
.-|+|+||....+- |+ .....-|.|.|+|..|+.|.+.
T Consensus 29 ~~llI~na~vi~T~-D~~~~vi~~gdV~I~dgrI~aVG~~ 67 (479)
T 3hpa_A 29 KTLLVKHADVLVTM-DDTRRELRDAGLYIEDNRIVAVGPS 67 (479)
T ss_dssp CEEEEEEEEEEECC-CTTCCEEEEEEEEEETTEEEEEEEG
T ss_pred CCEEEECCEEEEee-CCCCCEEcCcEEEEECCEEEEEeCC
Confidence 35788888754321 22 1223346899999999999754
No 84
>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}
Probab=34.14 E-value=67 Score=18.71 Aligned_cols=25 Identities=4% Similarity=0.020 Sum_probs=22.2
Q ss_pred cCCEEEEEEcCCcEEEEEEEEeccc
Q 041342 18 IGSKIWVIMKGDKELVGTLKGFDVY 42 (87)
Q Consensus 18 l~k~V~V~l~dgr~~~G~L~~~D~~ 42 (87)
+|.+|.-+-.|++.|.+++.+++..
T Consensus 24 vGd~VlArW~D~~yYPAkI~sV~~~ 48 (85)
T 3qii_A 24 INEQVLACWSDCRFYPAKVTAVNKD 48 (85)
T ss_dssp TTCEEEEECTTSCEEEEEEEEECTT
T ss_pred cCCEEEEEeCCCCEeeEEEEEECCC
Confidence 5778888889999999999999975
No 85
>3mkv_A Putative amidohydrolase; sargasso SEA, structural genomics, protein structure initiat NEW YORK structural genomix research consortium, nysgxrc; HET: KCX; 2.40A {Undefined}
Probab=32.40 E-value=70 Score=20.64 Aligned_cols=37 Identities=8% Similarity=0.084 Sum_probs=23.9
Q ss_pred ceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEeCC
Q 041342 44 NMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 82 (87)
Q Consensus 44 NlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~~~ 82 (87)
.++|+|+.... .++.+...-+.+.|++..|+.|.+..
T Consensus 5 ~lli~ng~i~d--~~~~~~~~~~dV~I~~G~I~~Ig~~~ 41 (426)
T 3mkv_A 5 TFLFRNGALLD--PDHPDLLQGFEILIEDGFIREVSDKP 41 (426)
T ss_dssp EEEEEEEEECC--TTSSSCEEEEEEEEETTEEEEEESSC
T ss_pred cEEEECeEEEe--CCCCcEecCcEEEEECCEEEEecCCC
Confidence 57788887642 22222334467899999999987643
No 86
>1nvp_D Transcription initiation factor IIA gamma chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: a.32.1.1 b.56.1.1
Probab=31.39 E-value=48 Score=20.14 Aligned_cols=26 Identities=27% Similarity=0.253 Sum_probs=20.5
Q ss_pred CCcEEEEEE---EEeccccceEEcceEEE
Q 041342 28 GDKELVGTL---KGFDVYVNMVLEDVTEY 53 (87)
Q Consensus 28 dgr~~~G~L---~~~D~~mNlvL~~~~e~ 53 (87)
+...+.|.| +-+|+.+.++|+|+.-.
T Consensus 53 sk~sfKG~L~tYrfcDnVWTf~lkd~~fk 81 (108)
T 1nvp_D 53 NRVNFRGSLNTYRFCDNVWTFVLNDVEFR 81 (108)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred cCCeEeeccCCccccCcEEEEEEeceEEE
Confidence 445667766 67899999999999865
No 87
>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1}
Probab=29.92 E-value=1.1e+02 Score=19.30 Aligned_cols=26 Identities=4% Similarity=0.014 Sum_probs=21.2
Q ss_pred CEEEEEEcCCcEEEEEEEEeccccceEE
Q 041342 20 SKIWVIMKGDKELVGTLKGFDVYVNMVL 47 (87)
Q Consensus 20 k~V~V~l~dgr~~~G~L~~~D~~mNlvL 47 (87)
..+.|.+ ||+.+..++. +|....|.|
T Consensus 43 ~~i~V~~-dg~~~~a~vv-~d~~~DlAl 68 (163)
T 2w5e_A 43 TFVNVCY-EGLMYEAKVR-YMPEKDIAF 68 (163)
T ss_dssp SEEEEEE-TTEEEEEEEE-ECCSSSEEE
T ss_pred ceEEEEE-CCEEEEEEEE-EECCCCEEE
Confidence 4678888 9999999999 887766655
No 88
>3uby_A DNA-3-methyladenine glycosylase; alkyladenine DNA glycosylase fold, AAG, DNA repair, DNA BIND nucleus, hydrolase-DNA complex; HET: DNA EDC; 2.00A {Homo sapiens} SCOP: b.46.1.2 PDB: 3qi5_A* 1f4r_A* 1f6o_A* 1ewn_A* 1bnk_A*
Probab=28.09 E-value=99 Score=20.97 Aligned_cols=33 Identities=18% Similarity=0.294 Sum_probs=26.0
Q ss_pred HHHHhhhcCCEEEEEEcCCcEEEEEEEEecccc
Q 041342 11 SELIDRCIGSKIWVIMKGDKELVGTLKGFDVYV 43 (87)
Q Consensus 11 l~~L~~~l~k~V~V~l~dgr~~~G~L~~~D~~m 43 (87)
+.+=.++||+.+.-++.+|..+.|.++....|+
T Consensus 17 ~~vA~~LLG~~Lv~~~~~g~~~~grIVEtEAY~ 49 (219)
T 3uby_A 17 VPLARAFLGQVLVRRLPNGTELRGRIVETEAYL 49 (219)
T ss_dssp HHHHHHTTTCEEEEECTTSCEEEEEEEEEEEEC
T ss_pred HHHHHHhCCCEEEEEcCCCCEEEEEEEEEeecc
Confidence 334457899998888889999999998776664
No 89
>3kl9_A PEPA, glutamyl aminopeptidase; tetrahedral aminopeptidase, S specificity, metallopeptidase M42, hydrolas; 2.70A {Streptococcus pneumoniae}
Probab=27.35 E-value=48 Score=23.62 Aligned_cols=23 Identities=4% Similarity=0.037 Sum_probs=18.9
Q ss_pred hhcCCEEEEEEcCCcEEEEEEEE
Q 041342 16 RCIGSKIWVIMKGDKELVGTLKG 38 (87)
Q Consensus 16 ~~l~k~V~V~l~dgr~~~G~L~~ 38 (87)
.+.+++|+|..++|+.+.|++-.
T Consensus 96 ~~~~~~v~i~t~~g~~~~Gvig~ 118 (355)
T 3kl9_A 96 VVSSQRFKLLTRDGHEIPVISGS 118 (355)
T ss_dssp TCSSCEEEEECTTSCEEEEEEC-
T ss_pred ccCCCEEEEEcCCCCEEEEEEeC
Confidence 45688999999999999998843
No 90
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=26.93 E-value=54 Score=19.42 Aligned_cols=21 Identities=5% Similarity=0.080 Sum_probs=17.8
Q ss_pred CEEEEEEcCCcEEEEEEEEec
Q 041342 20 SKIWVIMKGDKELVGTLKGFD 40 (87)
Q Consensus 20 k~V~V~l~dgr~~~G~L~~~D 40 (87)
.+|.|++-||..+++++..-|
T Consensus 14 t~IqIRlpdG~rl~~rF~~~~ 34 (109)
T 2dzk_A 14 ARIQFRLPDGSSFTNQFPSDA 34 (109)
T ss_dssp EEEEEECSSSCEEEEEECTTS
T ss_pred EEEEEECCCCCEEEEEeCCCC
Confidence 479999999999999996544
No 91
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=26.33 E-value=23 Score=22.44 Aligned_cols=22 Identities=9% Similarity=0.297 Sum_probs=15.6
Q ss_pred CCCCcCcHHHHhhhcCCEEEEE
Q 041342 4 NPSQLLPSELIDRCIGSKIWVI 25 (87)
Q Consensus 4 ~~~~~~Pl~~L~~~l~k~V~V~ 25 (87)
+|.+.---+.|.+|.|++|++.
T Consensus 28 ~~~pRVN~s~L~~fvGk~VriV 49 (142)
T 2pi2_E 28 LPRSRINAGMLAQFIDKPVCFV 49 (142)
T ss_dssp SCCEEECGGGGGGSTTCEEEEE
T ss_pred CCcceECHHHHHhhCCCEEEEE
Confidence 3444334678999999999873
No 92
>2dir_A Thump domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.308.1.3
Probab=25.87 E-value=66 Score=18.36 Aligned_cols=22 Identities=9% Similarity=-0.105 Sum_probs=18.8
Q ss_pred CEEEEEEcCCcEEEEEEEEecc
Q 041342 20 SKIWVIMKGDKELVGTLKGFDV 41 (87)
Q Consensus 20 k~V~V~l~dgr~~~G~L~~~D~ 41 (87)
..|.|++.++..+.|.+..|..
T Consensus 75 ~~I~VEI~~~~~~isv~~~y~~ 96 (98)
T 2dir_A 75 YTVVVEIIKAVCCLSVVKSGPS 96 (98)
T ss_dssp EEEEEEEETTEEEEEEEECCCT
T ss_pred EEEEEEEeCCEEEEEEcccccc
Confidence 3689999999999999998764
No 93
>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*
Probab=25.84 E-value=82 Score=16.70 Aligned_cols=25 Identities=12% Similarity=0.218 Sum_probs=21.0
Q ss_pred cCCEEEEEE-cCCcEEEEEEEEeccc
Q 041342 18 IGSKIWVIM-KGDKELVGTLKGFDVY 42 (87)
Q Consensus 18 l~k~V~V~l-~dgr~~~G~L~~~D~~ 42 (87)
.|..+..+. .||..|++++.+++..
T Consensus 11 vGd~c~A~~s~Dg~wYrA~I~~v~~~ 36 (64)
T 4a4f_A 11 VGDKCMAVWSEDGQCYEAEIEEIDEE 36 (64)
T ss_dssp TTCEEEEECTTTSSEEEEEEEEEETT
T ss_pred CCCEEEEEECCCCCEEEEEEEEEcCC
Confidence 577888887 5999999999999863
No 94
>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1
Probab=25.24 E-value=1e+02 Score=17.70 Aligned_cols=24 Identities=21% Similarity=0.234 Sum_probs=20.3
Q ss_pred cCCEEEEEEc-CCcEEEEEEEEecc
Q 041342 18 IGSKIWVIMK-GDKELVGTLKGFDV 41 (87)
Q Consensus 18 l~k~V~V~l~-dgr~~~G~L~~~D~ 41 (87)
.|..+..... ||..|++++.+++.
T Consensus 13 vGd~C~A~ys~Dg~wYrA~I~~i~~ 37 (88)
T 1g5v_A 13 VGDKCSAIWSEDGCIYPATIASIDF 37 (88)
T ss_dssp SSCEEEEECTTTCCEEEEEEEEEET
T ss_pred CCCEEEEEECCCCCEEEEEEEEecC
Confidence 4677888875 99999999999985
No 95
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=24.47 E-value=49 Score=20.17 Aligned_cols=22 Identities=14% Similarity=-0.020 Sum_probs=18.4
Q ss_pred CEEEEEEcCCcEEEEEEEEecc
Q 041342 20 SKIWVIMKGDKELVGTLKGFDV 41 (87)
Q Consensus 20 k~V~V~l~dgr~~~G~L~~~D~ 41 (87)
.+|.|+|-||..+.+++..-|.
T Consensus 44 t~IqIRlPdG~rl~~rF~~~~t 65 (124)
T 1wj4_A 44 AQLMLRYPDGKREQITLPEQAK 65 (124)
T ss_dssp EEEEEECTTSCEEEEEEETTSC
T ss_pred EEEEEECCCCCEEEEEeCCCCC
Confidence 3788999999999999977663
No 96
>2qs8_A XAA-Pro dipeptidase; amidohydrolase, TIM barrel, protein structure initiative, PSI-2, NYSGXRC, structural genomics; 2.33A {Alteromonas macleodii} SCOP: b.92.1.9 c.1.9.18
Probab=24.46 E-value=85 Score=21.72 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=25.5
Q ss_pred EeccccceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEeC
Q 041342 38 GFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPG 81 (87)
Q Consensus 38 ~~D~~mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~~ 81 (87)
++|..|.+++.|+..... ++.....-+.+.|+|..|..|.+.
T Consensus 2 ~~~~~~~~li~n~~v~~~--~~~~~~~~~~v~I~~g~I~~vg~~ 43 (418)
T 2qs8_A 2 SLDVDSKTLIHAGKLIDG--KSDQVQSRISIVIDGNIISDIKKG 43 (418)
T ss_dssp -----CCEEEEEEEECCS--SCSSCEEEEEEEEETTEEEEEEES
T ss_pred CCCCCccEEEEeeEEEeC--CCCccccCcEEEEECCEEEEEeCC
Confidence 567788889998876531 221123346899999999999764
No 97
>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*
Probab=24.35 E-value=84 Score=16.30 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=18.4
Q ss_pred CCEEEEEEc-CCcEEEEEEEEecc
Q 041342 19 GSKIWVIMK-GDKELVGTLKGFDV 41 (87)
Q Consensus 19 ~k~V~V~l~-dgr~~~G~L~~~D~ 41 (87)
|..+..... ||..|++++.+++.
T Consensus 7 G~~c~A~~s~Dg~wYrA~I~~i~~ 30 (59)
T 1mhn_A 7 GDKCSAIWSEDGCIYPATIASIDF 30 (59)
T ss_dssp TCEEEEECTTTSCEEEEEEEEEET
T ss_pred CCEEEEEECCCCCEEEEEEEEEcC
Confidence 455666665 89999999999975
No 98
>3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.05A {Thermotoga maritima}
Probab=24.18 E-value=61 Score=22.90 Aligned_cols=22 Identities=14% Similarity=0.410 Sum_probs=17.2
Q ss_pred hcCCEEEEE-EcCCcEEEEEEEE
Q 041342 17 CIGSKIWVI-MKGDKELVGTLKG 38 (87)
Q Consensus 17 ~l~k~V~V~-l~dgr~~~G~L~~ 38 (87)
..|..|+|+ +..|+.+.|++.+
T Consensus 238 a~Gd~IRVrNl~SgkiV~G~V~~ 260 (278)
T 3frn_A 238 YLGETVRAMNVESRKYVFGRVER 260 (278)
T ss_dssp CTTCEEEEEC--CCCEEEEEEET
T ss_pred CCCCEEEEEECCCCCEEEEEEec
Confidence 468899998 9999999999864
No 99
>2cw5_A Bacterial fluorinating enzyme homolog; alpha and beta protein (A/B), beta barrel, structural genomics, NPPSFA; 1.94A {Thermus thermophilus}
Probab=23.77 E-value=42 Score=23.30 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=15.6
Q ss_pred EEEEEEEeccccceEEc
Q 041342 32 LVGTLKGFDVYVNMVLE 48 (87)
Q Consensus 32 ~~G~L~~~D~~mNlvL~ 48 (87)
++|.+.-+|.|.|++..
T Consensus 174 i~g~V~~iD~FGN~iTn 190 (255)
T 2cw5_A 174 PEGEVLTFDRFGNAITT 190 (255)
T ss_dssp SEEEEEEECTTCCEEES
T ss_pred cEEEEEEEcccCCceec
Confidence 89999999999999764
No 100
>1rqp_A 5'-fluoro-5'-deoxyadenosine synthase; fluorinase, central 7 stranded beta sheets, anti-parallel BE sheets, transferase; HET: SAM; 1.80A {Streptomyces cattleya} SCOP: b.141.1.1 c.132.1.1 PDB: 1rqr_A* 2c2w_A* 2c4t_A* 2c4u_A 2c5b_A* 2c5h_A* 2cbx_A* 2cc2_A* 2v7v_A* 2v7x_A* 2v7w_A* 2v7t_A* 2v7u_A*
Probab=23.23 E-value=56 Score=23.29 Aligned_cols=20 Identities=25% Similarity=0.431 Sum_probs=17.3
Q ss_pred CcEEEEEEEEec-cccceEEc
Q 041342 29 DKELVGTLKGFD-VYVNMVLE 48 (87)
Q Consensus 29 gr~~~G~L~~~D-~~mNlvL~ 48 (87)
+..+.|.+.-+| .|.|++..
T Consensus 199 ~~~i~g~V~~iD~~FGNviTn 219 (299)
T 1rqp_A 199 GEALVGVVSAIDHPFGNVWTN 219 (299)
T ss_dssp TTEEEEEEEEEETTTTEEEEE
T ss_pred CCeEEEEEEEECCCCCCeEec
Confidence 567899999999 99999754
No 101
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=23.15 E-value=63 Score=19.03 Aligned_cols=22 Identities=5% Similarity=-0.209 Sum_probs=18.4
Q ss_pred CEEEEEEcCCcEEEEEEEEecc
Q 041342 20 SKIWVIMKGDKELVGTLKGFDV 41 (87)
Q Consensus 20 k~V~V~l~dgr~~~G~L~~~D~ 41 (87)
.+|.|++-||..+..++..-|.
T Consensus 24 ~~IqiRlpdG~r~~rrF~~~~t 45 (109)
T 2cr5_A 24 VTVALRCPNGRVLRRRFFKSWN 45 (109)
T ss_dssp EEEEEECTTSCEEEEEEESSSB
T ss_pred EEEEEECCCCCEEEEEeCCCCC
Confidence 4788899999999999977663
No 102
>1zq1_A Glutamyl-tRNA(Gln) amidotransferase subunit D; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: b.38.3.1 c.88.1.1
Probab=22.87 E-value=75 Score=23.69 Aligned_cols=40 Identities=15% Similarity=0.209 Sum_probs=26.9
Q ss_pred HHHhhhc---CCEEEEEEcCC---cEEEEEEEE-ec----cccceEEcceE
Q 041342 12 ELIDRCI---GSKIWVIMKGD---KELVGTLKG-FD----VYVNMVLEDVT 51 (87)
Q Consensus 12 ~~L~~~l---~k~V~V~l~dg---r~~~G~L~~-~D----~~mNlvL~~~~ 51 (87)
++|.+.- +.+|+|+.++| ..|+|+|.- ++ .+.=|.|+|-+
T Consensus 5 ~~~~~~~~~~gd~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~kl~~gy 55 (438)
T 1zq1_A 5 EFLKERNINVGDFVRITKEEDGEEVTYEGYIMPPYELSAGDTLVLKLENGY 55 (438)
T ss_dssp HHHHHTTCCTTCEEEEEEESSSSEEECCEEECCCCTTCCCSEEEEEETTSC
T ss_pred HHHHhcCCCCCCEEEEEECCCcceeEEEEEEecCcccCCCCeEEEEccCCc
Confidence 4455433 78999999998 899999983 33 44445555443
No 103
>2p5z_X Type VI secretion system component; structural genomics, unknown function, PSI-2, protein struct initiative; 2.60A {Escherichia coli O6} SCOP: b.40.8.1 b.106.1.1 b.106.1.1
Probab=22.83 E-value=1e+02 Score=22.52 Aligned_cols=28 Identities=14% Similarity=0.233 Sum_probs=22.1
Q ss_pred HhhhcCCEEEEEEcC----------C-cEEEEEEEEecc
Q 041342 14 IDRCIGSKIWVIMKG----------D-KELVGTLKGFDV 41 (87)
Q Consensus 14 L~~~l~k~V~V~l~d----------g-r~~~G~L~~~D~ 41 (87)
|..++++.+.|.+.. . |.+.|++..+..
T Consensus 58 l~~llg~~~~l~i~~~~~~g~~~g~~~r~~~GiVt~~~~ 96 (491)
T 2p5z_X 58 PESVLMQDGAFSLTAPPVQGMPVQTALRTLHGVITGFKH 96 (491)
T ss_dssp GGGTTTCEEEEEECC----------CCEEEEEEEEEEEE
T ss_pred HHHHcCCcEEEEEEcCCcccccCCccceEEEEEEEEEEE
Confidence 367899999998842 2 889999988764
No 104
>4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=22.24 E-value=42 Score=20.27 Aligned_cols=22 Identities=18% Similarity=0.643 Sum_probs=14.8
Q ss_pred CCCCcCcHHHHhhhcCCEEEEE
Q 041342 4 NPSQLLPSELIDRCIGSKIWVI 25 (87)
Q Consensus 4 ~~~~~~Pl~~L~~~l~k~V~V~ 25 (87)
+|.+..--+.|.+|.++.|++.
T Consensus 3 ~~tpRVn~~~L~~~~g~~Vriv 24 (114)
T 4gop_A 3 KPTPLINSSMLGQYVGQTVRIV 24 (114)
T ss_dssp CCCCEECTTTGGGGTTSEEEEE
T ss_pred CCCceECHHHHHhhCCCeEEEE
Confidence 3444333457899999998763
No 105
>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1
Probab=22.23 E-value=33 Score=22.90 Aligned_cols=30 Identities=17% Similarity=0.129 Sum_probs=24.7
Q ss_pred CEEEEEEcCCcEEEEEEEEeccccceEEcc
Q 041342 20 SKIWVIMKGDKELVGTLKGFDVYVNMVLED 49 (87)
Q Consensus 20 k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~ 49 (87)
.+++|.+.||+.+.+.+.++|....|-|=.
T Consensus 80 ~~i~V~~~~g~~~~a~vv~~d~~~DlAllk 109 (239)
T 1l1j_A 80 DNITVTMLDGSKYDAEYIGGDEELDIAVIK 109 (239)
T ss_dssp SSCEEECTTSCEEEBCCCEEETTTTEEEEE
T ss_pred CEEEEEECCCCEEEEEEEEEcCCCCEEEEE
Confidence 357888999999999999999887776643
No 106
>2q6k_A Chlorinase; complex with adenosine, biosynthetic protein; HET: ADN; 1.55A {Salinispora tropica} PDB: 2q6i_A* 2q6o_A* 2q6l_A*
Probab=21.98 E-value=47 Score=23.34 Aligned_cols=20 Identities=15% Similarity=0.288 Sum_probs=15.4
Q ss_pred CcEEEEEEEEec-cccceEEc
Q 041342 29 DKELVGTLKGFD-VYVNMVLE 48 (87)
Q Consensus 29 gr~~~G~L~~~D-~~mNlvL~ 48 (87)
+..++|.+.-+| .|.|++..
T Consensus 172 ~~~i~g~V~~iD~~FGN~iTn 192 (283)
T 2q6k_A 172 EGGIRGEVVRIDRAFGNVWTN 192 (283)
T ss_dssp ---CEEEEEEEETTTTEEEEE
T ss_pred CCeEEEEEEEECCCCCCEEec
Confidence 456899999999 99999754
No 107
>3feq_A Putative amidohydrolase; unknown source, sargasso SEA, structural GEN protein structure initiative, PSI; 2.63A {Unidentified} PDB: 3lwy_A* 3n2c_A*
Probab=20.93 E-value=2.1e+02 Score=19.55 Aligned_cols=37 Identities=14% Similarity=0.216 Sum_probs=24.3
Q ss_pred cceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEeC
Q 041342 43 VNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPG 81 (87)
Q Consensus 43 mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~~ 81 (87)
+.++|.|+.... .++.....-+.+.|++..|..|.+.
T Consensus 4 ~~~~i~n~~v~~--~~~~~~~~~~~v~I~~g~I~~vg~~ 40 (423)
T 3feq_A 4 TITVLQGGNVLD--LERGVLLEHHHVVIDGERIVEVTDR 40 (423)
T ss_dssp CEEEEEEEEEEE--TTTTEEEEEEEEEEETTEEEEEECS
T ss_pred eEEEEEccEEEe--CCCCcccCCceEEEECCEEEEecCC
Confidence 356778877653 2222234457888999999888764
No 108
>4g9s_B Inhibitor of G-type lysozyme, goose-type lysozyme; hydrolase inhibitor, hydrolase-hydrolase inhibitor; HET: FLC; 0.95A {Escherichia coli} PDB: 4dy3_A* 4dxz_A* 4dy5_A
Probab=20.42 E-value=43 Score=19.74 Aligned_cols=22 Identities=27% Similarity=0.610 Sum_probs=17.0
Q ss_pred CCEEEEEEcCC---cEEEEEEEEec
Q 041342 19 GSKIWVIMKGD---KELVGTLKGFD 40 (87)
Q Consensus 19 ~k~V~V~l~dg---r~~~G~L~~~D 40 (87)
++.|.|.+.-| ..+.|+|.|.|
T Consensus 2 ~~~~~V~F~~G~~~a~v~G~I~g~~ 26 (111)
T 4g9s_B 2 GKNVNVEFRKGHSSAQYSGEIKGYD 26 (111)
T ss_dssp CCEEECCCCTTCSEEEEEEEEETTC
T ss_pred CcceEEEECCCCCCeEEEEEEeCCC
Confidence 46777877665 58999999987
No 109
>4e0q_A COP9 signalosome complex subunit 6; MPN (MPR1P and PAD1P N-terminal) domain, unknown function; 2.50A {Drosophila melanogaster}
Probab=20.25 E-value=1.1e+02 Score=18.80 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=23.1
Q ss_pred CcEEEEEEEEeccccceEEcceEEEEE
Q 041342 29 DKELVGTLKGFDVYVNMVLEDVTEYEI 55 (87)
Q Consensus 29 gr~~~G~L~~~D~~mNlvL~~~~e~~~ 55 (87)
...+.|.|.|.+.--.+.+.||.+.-.
T Consensus 32 ~~~V~G~LLG~~~~~~veV~nsF~~p~ 58 (141)
T 4e0q_A 32 PRQVYGALIGKQKGRNIEIMNSFELKT 58 (141)
T ss_dssp CCEEEEEEEEEEETTEEEEEEEEECCE
T ss_pred CcEEEEEEEEEEeCCEEEEEEEEEecc
Confidence 468999999999888999999988643
No 110
>3j21_c 50S ribosomal protein L35AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} PDB: 1sqr_A 2lp6_A
Probab=20.00 E-value=74 Score=18.65 Aligned_cols=34 Identities=18% Similarity=0.092 Sum_probs=25.4
Q ss_pred HHHhhhcCCEEEEEEcCCcEEEEEEEEeccccce
Q 041342 12 ELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNM 45 (87)
Q Consensus 12 ~~L~~~l~k~V~V~l~dgr~~~G~L~~~D~~mNl 45 (87)
+.-.-|+||+|.-..+.|+.+-|.+.---.....
T Consensus 33 ~~a~fylGKrvayv~~~g~~iwGKVtr~HGnsGv 66 (87)
T 3j21_c 33 EEASKLIGRLVLWKSPSGKILKGKIVRVHGTKGA 66 (87)
T ss_dssp HHHGGGTTCEEEECCSSSCCEEEEEEEECCSSSC
T ss_pred HHHHhhcCceEEEEeCCCCEEEEEEEeeeCCCCe
Confidence 4456789999988888999999988765444333
Done!