Query 041342
Match_columns 87
No_of_seqs 166 out of 1047
Neff 6.9
Searched_HMMs 13730
Date Mon Mar 25 10:08:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041342.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041342hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2fwka1 b.38.1.1 (A:24-115) U6 99.9 1.1E-28 8.2E-33 150.5 7.2 79 6-84 2-92 (92)
2 d1h641_ b.38.1.1 (1:) Archaeal 99.9 2.6E-27 1.9E-31 138.3 10.7 70 9-81 2-71 (71)
3 d1ljoa_ b.38.1.1 (A:) Archaeal 99.9 3.4E-27 2.5E-31 139.4 11.1 73 6-81 2-75 (75)
4 d1i4k1_ b.38.1.1 (1:) Archaeal 99.9 2.1E-27 1.5E-31 139.2 9.5 71 8-81 2-72 (72)
5 d1mgqa_ b.38.1.1 (A:) Archaeal 99.9 7.9E-27 5.8E-31 137.3 10.5 71 7-80 4-74 (74)
6 d1i8fa_ b.38.1.1 (A:) Archaeal 99.9 1E-25 7.5E-30 131.8 10.0 69 10-82 3-71 (71)
7 d1d3bb_ b.38.1.1 (B:) B core S 99.9 5.2E-26 3.8E-30 135.8 8.8 73 13-85 2-81 (81)
8 d1th7a1 b.38.1.1 (A:3-78) Arch 99.9 1E-25 7.3E-30 133.2 9.7 70 9-81 7-76 (76)
9 d1b34b_ b.38.1.1 (B:) D2 core 99.9 3.7E-25 2.7E-29 135.3 9.3 75 8-82 1-88 (93)
10 d1n9ra_ b.38.1.1 (A:) Small nu 99.9 7.9E-25 5.8E-29 127.0 9.4 66 14-82 1-67 (68)
11 d1d3ba_ b.38.1.1 (A:) D3 core 99.9 1.6E-24 1.2E-28 126.8 10.1 70 9-81 2-71 (72)
12 d1b34a_ b.38.1.1 (A:) D1 core 99.9 1.3E-21 9.4E-26 116.4 9.5 69 11-82 3-71 (80)
13 d1m5q1_ b.38.1.1 (1:) Sm-Like 99.8 4.5E-20 3.2E-24 118.0 9.1 67 11-84 2-68 (127)
14 d2vxfa1 b.38.1.5 (A:6-85) LSM1 98.2 8.8E-06 6.4E-10 47.1 8.0 70 17-86 2-78 (80)
15 d1biaa2 b.34.1.1 (A:271-317) B 97.4 0.00033 2.4E-08 36.2 6.3 47 17-71 1-47 (47)
16 d1kq1a_ b.38.1.2 (A:) Pleiotro 96.6 0.0028 2E-07 34.3 5.1 33 19-51 14-46 (60)
17 d1u1sa1 b.38.1.2 (A:6-71) Plei 96.4 0.002 1.5E-07 35.5 3.8 34 13-46 6-41 (66)
18 d1ycya1 b.38.1.4 (A:5-70) Hypo 95.4 0.066 4.8E-06 28.7 7.1 42 12-54 5-46 (66)
19 d1ib8a1 b.38.2.1 (A:91-164) Hy 94.1 0.039 2.8E-06 30.2 4.1 36 11-47 6-45 (74)
20 d2qqra1 b.34.9.1 (A:897-955) J 83.1 0.93 6.8E-05 23.8 3.8 23 18-40 5-27 (59)
21 d1rqpa1 b.141.1.1 (A:193-298) 78.0 0.8 5.8E-05 26.3 2.7 22 27-48 5-27 (106)
22 d2grea1 b.49.3.1 (A:74-186) De 72.5 1.9 0.00014 24.9 3.4 22 16-37 25-46 (113)
23 d2z9ia2 b.47.1.1 (A:6-226) Pro 72.4 1.9 0.00014 26.6 3.6 31 19-49 58-88 (221)
24 d1y0ya1 b.49.3.1 (A:73-163) Fr 69.3 3.1 0.00023 22.9 3.7 22 16-37 25-46 (91)
25 d2qqra2 b.34.9.1 (A:956-1011) 59.8 6.7 0.00049 20.1 3.6 24 18-41 4-27 (56)
26 d1lcya2 b.47.1.1 (A:6-210) Mit 58.7 7.4 0.00054 23.5 4.4 29 20-48 66-94 (205)
27 d1yloa1 b.49.3.1 (A:67-147) Am 56.5 5.9 0.00043 21.3 3.2 23 16-38 25-47 (81)
28 d1m7ja1 b.92.1.6 (A:7-61) N-ac 55.1 9.8 0.00071 18.5 3.8 37 45-84 4-40 (55)
29 d1ky9a2 b.47.1.1 (A:11-259) Pr 52.3 12 0.00087 23.6 4.8 30 20-49 101-130 (249)
30 d2d6fa1 b.38.3.1 (A:2-73) Glut 49.5 8 0.00058 20.7 2.9 36 18-54 17-57 (72)
31 d1yrra1 b.92.1.5 (A:1-53,A:351 46.9 14 0.001 19.6 3.8 17 66-82 19-35 (85)
32 d1zq1a1 b.38.3.1 (A:2-75) Glut 46.3 7.6 0.00056 20.9 2.5 38 18-55 13-58 (74)
33 d2qf3a1 b.47.1.1 (A:43-252) St 43.9 13 0.00098 22.3 3.8 31 20-50 60-90 (210)
34 d1ewna_ b.46.1.2 (A:) 3-methyl 43.9 18 0.0013 22.9 4.5 34 10-43 14-47 (214)
35 d2zgwa1 b.34.1.1 (A:189-235) B 41.4 17 0.0013 17.4 3.8 27 22-48 2-28 (47)
36 d1vhea1 b.49.3.1 (A:73-162) Hy 39.6 15 0.0011 19.8 3.2 23 15-38 24-46 (90)
37 d1h8ca_ d.15.1.2 (A:) Fas-asso 37.2 8.6 0.00063 20.2 1.8 21 21-41 7-27 (82)
38 d1nfga1 b.92.1.3 (A:1-51,A:382 36.5 27 0.0019 19.9 4.2 36 43-83 1-36 (127)
39 d2r8ca1 b.92.1.9 (A:2-57,A:369 35.8 30 0.0022 18.6 4.4 36 45-82 3-38 (102)
40 d2vhla1 b.92.1.5 (A:3-57,A:359 33.7 33 0.0024 18.4 5.5 34 44-81 2-35 (91)
41 d1vhka1 b.122.1.2 (A:2-73) Hyp 33.3 22 0.0016 18.1 3.1 29 13-41 31-59 (72)
42 d2hqxa1 b.34.9.1 (A:8-97) P100 31.5 32 0.0024 18.1 3.7 24 18-41 28-51 (90)
43 d1k1da1 b.92.1.3 (A:1-52,A:385 31.3 42 0.0031 18.9 5.6 34 43-81 1-34 (128)
44 d2cr5a1 d.15.1.2 (A:8-103) UBX 31.3 18 0.0013 19.4 2.6 21 21-41 18-38 (96)
45 d1ah9a_ b.40.4.5 (A:) Translat 30.3 22 0.0016 18.6 2.7 34 19-52 18-53 (71)
46 d2pi2e1 b.40.4.3 (E:3-117) Rep 30.3 8.6 0.00063 22.0 1.1 24 2-25 3-26 (115)
47 d1sg5a1 b.137.1.2 (A:1-86) Inh 29.0 11 0.00079 20.7 1.3 53 16-79 22-74 (86)
48 d1o9ya_ b.139.1.1 (A:) Structu 28.0 36 0.0026 17.1 3.5 32 17-48 37-68 (71)
49 d1vhoa1 b.49.3.1 (A:70-152) Pu 26.6 20 0.0015 19.1 2.2 22 15-37 23-44 (83)
50 d3d37a1 b.106.1.1 (A:6-178) Ba 25.5 34 0.0025 19.8 3.4 28 13-40 45-72 (173)
51 d1mhna_ b.34.9.1 (A:) Survival 25.0 39 0.0028 16.5 4.4 26 19-44 7-33 (59)
52 d2b9va2 c.69.1.21 (A:50-434) A 24.3 13 0.00096 24.4 1.3 32 6-37 15-46 (385)
53 d2qs8a1 b.92.1.9 (A:7-63,A:374 24.2 51 0.0037 17.6 4.7 22 62-83 18-39 (96)
54 d1nxza1 b.122.1.2 (A:2-73) Hyp 24.0 32 0.0024 17.3 2.7 29 13-41 30-58 (72)
55 d1onwa1 b.92.1.7 (A:1-62,A:347 24.0 54 0.0039 17.8 5.2 33 45-82 10-42 (105)
56 d2p5zx2 b.106.1.1 (X:15-201) H 22.7 58 0.0042 19.2 4.1 27 14-40 42-79 (187)
57 d1c3ga2 b.4.1.1 (A:260-349) He 22.4 19 0.0014 19.1 1.6 28 8-35 12-39 (90)
58 d2d9ta1 b.34.9.1 (A:8-67) Tudo 22.1 45 0.0033 16.2 4.6 26 19-44 6-32 (60)
59 d1i42a_ d.15.1.2 (A:) p47 {Rat 20.7 38 0.0028 17.8 2.6 21 21-41 16-36 (89)
No 1
>d2fwka1 b.38.1.1 (A:24-115) U6 snRNA-associated sm-like protein LSM5 {Cryptosporidium parvum [TaxId: 5807]}
Probab=99.95 E-value=1.1e-28 Score=150.50 Aligned_cols=79 Identities=58% Similarity=1.084 Sum_probs=70.1
Q ss_pred CCcCcHHHHhhhcCCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEccC------------CeeeEeeCeEEEcCC
Q 041342 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE------------GRRITKLDQILLNGN 73 (87)
Q Consensus 6 ~~~~Pl~~L~~~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~~------------g~~~~~~g~v~IRG~ 73 (87)
.+.+|+++|+++++++|+|.++|||.|.|+|.|||+|||++|+||.|++...+ +...+.+|++||||+
T Consensus 2 ~~~~Pl~~L~~~l~k~V~V~l~~gr~~~G~L~~~D~~~NlvL~d~~E~~~~~~~~~~~~~~~~~~~~~~r~lg~~~iRG~ 81 (92)
T d2fwka1 2 NIILPLALIDKCIGNRIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGN 81 (92)
T ss_dssp CCCCHHHHHHHTBTSBCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEECGG
T ss_pred CccChHHHHHHHcCCEEEEEEcCCCEEEEEEEEEcCCCCEEEeeEEEEEecCCccccccccccccccceeEcceEEEeCC
Confidence 47899999999999999999999999999999999999999999999875311 124578999999999
Q ss_pred cEEEEEeCCCC
Q 041342 74 NIAILVPGGSP 84 (87)
Q Consensus 74 ~I~~I~~~~~p 84 (87)
+|++|++.++|
T Consensus 82 ~Vv~I~p~~~~ 92 (92)
T d2fwka1 82 NVAMLVPGGDP 92 (92)
T ss_dssp GEEEEESSSCC
T ss_pred EEEEEEeCCCC
Confidence 99999998877
No 2
>d1h641_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Probab=99.95 E-value=2.6e-27 Score=138.31 Aligned_cols=70 Identities=29% Similarity=0.599 Sum_probs=65.7
Q ss_pred CcHHHHhhhcCCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEeC
Q 041342 9 LPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPG 81 (87)
Q Consensus 9 ~Pl~~L~~~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~~ 81 (87)
.|+++|+++++++|+|+++||+.|+|+|.+||+|||++|+||.|+. ++.+.+.+|.+||||++|++|+|.
T Consensus 2 ~Pl~~L~~~~~~~V~V~lk~g~~~~G~L~~~D~~mNlvL~~~~e~~---~~~~~~~l~~~~IRG~~I~~Isp~ 71 (71)
T d1h641_ 2 RPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQ---DGEVVKRYGKIVIRGDNVLAISPT 71 (71)
T ss_dssp CHHHHHHTTTTSEEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEE---TTEEEEEEEEEEECGGGEEEEEEC
T ss_pred CchHHHHHhCCCEEEEEEcCCCEEEEEEEEECCCCCeEEeeEEEEe---cCCcEeEcCcEEEECCeEEEEeCC
Confidence 6999999999999999999999999999999999999999999986 455688999999999999999873
No 3
>d1ljoa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Archaeoglobus fulgidus, AF-Sm2 [TaxId: 2234]}
Probab=99.95 E-value=3.4e-27 Score=139.44 Aligned_cols=73 Identities=34% Similarity=0.697 Sum_probs=67.0
Q ss_pred CCcCcHHHHhhhcCCEEEEEEcCC-cEEEEEEEEeccccceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEeC
Q 041342 6 SQLLPSELIDRCIGSKIWVIMKGD-KELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPG 81 (87)
Q Consensus 6 ~~~~Pl~~L~~~l~k~V~V~l~dg-r~~~G~L~~~D~~mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~~ 81 (87)
+++.|+++|+++++++|+|++++| +.|.|+|.|||+|||++|+||+|+. ++.+.+.+|.+||||++|.+|+|.
T Consensus 2 ~~~~P~~~L~~~~~~~V~V~lk~~~~~~~G~L~~~D~~mNlvL~~~~e~~---~~~~~~~~g~~~IRG~~I~~I~p~ 75 (75)
T d1ljoa_ 2 AMVLPNQMVKSMVGKIIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECK---GEEKVRSLGEIVLRGNNVVLIQPQ 75 (75)
T ss_dssp CCCCHHHHHHHTTTSEEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEE---TTEEEEEEEEEEECGGGEEEEEEC
T ss_pred CccccHHHHHHhcCCEEEEEEECCCEEEEEEEEEEcCCCcEEEeEEEEEc---CCCcEeEcceEEEeCCEEEEEECC
Confidence 578999999999999999999965 8999999999999999999999986 445688999999999999999873
No 4
>d1i4k1_ b.38.1.1 (1:) Archaeal homoheptameric Sm protein {Archaeon Archaeoglobus fulgidus, AF-Sm1 [TaxId: 2234]}
Probab=99.94 E-value=2.1e-27 Score=139.18 Aligned_cols=71 Identities=30% Similarity=0.645 Sum_probs=65.5
Q ss_pred cCcHHHHhhhcCCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEeC
Q 041342 8 LLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPG 81 (87)
Q Consensus 8 ~~Pl~~L~~~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~~ 81 (87)
..|+++|+++++++|+|+|+||+.|+|+|.+||+|||++|+||+|+. ++.+.+.+|.+||||++|.+|+++
T Consensus 2 ~~Pl~~L~~~~~~~V~V~lk~g~~~~G~L~~~D~~mNlvL~~~~e~~---~~~~~~~~g~~~IRG~~I~~Ispa 72 (72)
T d1i4k1_ 2 PRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQ---NGEVVRKVGSVVIRGDTVVFVSPA 72 (72)
T ss_dssp CCHHHHHHTTTTSEEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEES---SSSEEEEEEEEEECGGGEEEEECC
T ss_pred CChHHHHHHhCCCEEEEEECCCCEEEEEEEEEcCCCCeEEeeEEEEe---cCCeEeEcceEEEeCCeEEEEEcC
Confidence 46999999999999999999999999999999999999999999985 345678999999999999999853
No 5
>d1mgqa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=99.94 E-value=7.9e-27 Score=137.31 Aligned_cols=71 Identities=34% Similarity=0.652 Sum_probs=66.0
Q ss_pred CcCcHHHHhhhcCCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEe
Q 041342 7 QLLPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVP 80 (87)
Q Consensus 7 ~~~Pl~~L~~~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~ 80 (87)
...|+++|+++++++|+|+|+||+.|+|+|.+||+|||++|+||+|+. ++.+.+.+|.+||||++|.+|+|
T Consensus 4 ~~~Pl~~L~~~~~k~V~V~lk~g~~~~G~L~~~D~~mNl~L~~~~e~~---~~~~~~~~~~~~IRG~~I~~I~p 74 (74)
T d1mgqa_ 4 VQRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELE---DGEVTRRLGTVLIRGDNIVYISP 74 (74)
T ss_dssp TTCTTHHHHHTTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEE---TTEEEEEEEEEEECGGGEEEEEC
T ss_pred ccCcHHHHHHhCCCeEEEEECCCCEEEEEEEEECCCCCeEEeeEEEEe---CCCeEeEcceEEEeCCEEEEEeC
Confidence 457999999999999999999999999999999999999999999986 45568899999999999999985
No 6
>d1i8fa_ b.38.1.1 (A:) Archaeal homoheptameric Sm protein {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=99.93 E-value=1e-25 Score=131.75 Aligned_cols=69 Identities=28% Similarity=0.531 Sum_probs=62.7
Q ss_pred cHHHHhhhcCCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEeCC
Q 041342 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 82 (87)
Q Consensus 10 Pl~~L~~~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~~~ 82 (87)
.-+.|+++++++|+|+|+||+.|+|+|.+||+|||++|+||+|+. ++ +.+.+|.++|||++|++|++.+
T Consensus 3 ~~~~L~~~~~k~V~V~Lk~g~~~~G~L~~~D~~mNivL~~~~e~~---~~-~~~~~g~v~iRG~~I~~I~~~P 71 (71)
T d1i8fa_ 3 LGATLQDSIGKQVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEII---DG-NVYKRGTMVVRGENVLFISPVP 71 (71)
T ss_dssp HHHHHHTTTTSEEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEEE---TT-EEEEEEEEEECGGGEEEEEECC
T ss_pred HhHHHHHhCCCEEEEEECCCCEEEEEEEEECCCcceEEccEEEEE---CC-CEEEcceEEEeCCeEEEEeCCC
Confidence 457899999999999999999999999999999999999999986 33 4688999999999999998653
No 7
>d1d3bb_ b.38.1.1 (B:) B core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.93 E-value=5.2e-26 Score=135.85 Aligned_cols=73 Identities=25% Similarity=0.445 Sum_probs=63.8
Q ss_pred HHhhhcCCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEccC-------CeeeEeeCeEEEcCCcEEEEEeCCCCC
Q 041342 13 LIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAE-------GRRITKLDQILLNGNNIAILVPGGSPD 85 (87)
Q Consensus 13 ~L~~~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~~-------g~~~~~~g~v~IRG~~I~~I~~~~~p~ 85 (87)
.|.+|++++|+|.++|||.|.|+|.|||+||||+|++|.|++.... +...|.+|+++|||++|++|+..+.||
T Consensus 2 ~L~~~l~~rv~V~l~dgR~~~G~L~~~D~~~NlvL~~~~E~~~~~~~~~~~~~~~~~r~lG~v~IRG~~Iv~i~~~~~pp 81 (81)
T d1d3bb_ 2 KMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPP 81 (81)
T ss_dssp CCGGGTTSEEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEEEEEEEECCC
T ss_pred hhHHHCCCEEEEEEcCCCEEEEEEEEECCccCEEEcCEEEEEeecCccccccccceEEEeeeEEEeCCEEEEEEccCCCC
Confidence 4689999999999999999999999999999999999999865211 134689999999999999999877664
No 8
>d1th7a1 b.38.1.1 (A:3-78) Archaeal homoheptameric Sm protein {Sulfolobus solfataricus [TaxId: 2287]}
Probab=99.93 E-value=1e-25 Score=133.17 Aligned_cols=70 Identities=27% Similarity=0.518 Sum_probs=64.3
Q ss_pred CcHHHHhhhcCCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEeC
Q 041342 9 LPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPG 81 (87)
Q Consensus 9 ~Pl~~L~~~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~~ 81 (87)
.|..+|.++++++|+|+|+||+.|+|+|.+||+|||++|+||+|+. .+.+.+.+|.+||||++|++|++.
T Consensus 7 ~~~~~L~~~~~~~V~V~lk~g~~~~G~L~~~D~~mNlvL~~~~e~~---~~~~~~~~~~v~iRG~~I~~I~~~ 76 (76)
T d1th7a1 7 TAHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQ---SDGSGKKLGTIVIRGDNVILISPL 76 (76)
T ss_dssp HHHHHHHHHTTSEEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEC---SSSCEEEEEEEEECGGGEEEEEEC
T ss_pred cHHHHHHHhCCCEEEEEECCCCEEEEEEEEECCCCCEEEeEEEEEe---cCCcccCcceEEEECCEEEEEEeC
Confidence 4889999999999999999999999999999999999999999986 233478999999999999999974
No 9
>d1b34b_ b.38.1.1 (B:) D2 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.92 E-value=3.7e-25 Score=135.31 Aligned_cols=75 Identities=21% Similarity=0.438 Sum_probs=63.1
Q ss_pred cCcHHHHhhhc--CCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEccCC-----------eeeEeeCeEEEcCCc
Q 041342 8 LLPSELIDRCI--GSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEG-----------RRITKLDQILLNGNN 74 (87)
Q Consensus 8 ~~Pl~~L~~~l--~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~~g-----------~~~~~~g~v~IRG~~ 74 (87)
.+|+++|.+++ +++|+|.++|||.++|+|.|||+|||++|+||+|++...+. ...|.+|++||||++
T Consensus 1 tGPl~~l~~~~~~~~rV~V~lr~~r~~~G~L~afD~~~NlVL~d~~E~~~~~~~~~~~~~~~~~~~~~R~lg~~liRGdn 80 (93)
T d1b34b_ 1 TGPLSVLTQSVKNNTQVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDS 80 (93)
T ss_dssp CCHHHHHHHHHHHTCEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEEECGGG
T ss_pred CCcHHHHHHHHhCCcEEEEEECCCCEEEEEEEEeccceeEEeeceEEEEEecCCccccccccccceeEEEeceEEEeCCE
Confidence 47999999999 89999999999999999999999999999999998763211 135789999999999
Q ss_pred EEEEEeCC
Q 041342 75 IAILVPGG 82 (87)
Q Consensus 75 I~~I~~~~ 82 (87)
|++|...+
T Consensus 81 Vv~I~~~p 88 (93)
T d1b34b_ 81 VIVVLRNP 88 (93)
T ss_dssp EEEEEECC
T ss_pred EEEEEcCh
Confidence 99997654
No 10
>d1n9ra_ b.38.1.1 (A:) Small nuclear ribonucleoprotein F, Smf {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.92 E-value=7.9e-25 Score=127.02 Aligned_cols=66 Identities=24% Similarity=0.367 Sum_probs=59.8
Q ss_pred HhhhcCCEEEEEEc-CCcEEEEEEEEeccccceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEeCC
Q 041342 14 IDRCIGSKIWVIMK-GDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 82 (87)
Q Consensus 14 L~~~l~k~V~V~l~-dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~~~ 82 (87)
|+++++++|.|+|+ +|+.|+|+|.+||+|||++|+||+|+. ++...+.+|.+||||++|.+|++.+
T Consensus 1 L~~~~~~~V~V~Lk~~~~~~~G~L~~~D~~mNlvL~~~~e~~---~~~~~~~lg~~~IRG~nI~~I~~~p 67 (68)
T d1n9ra_ 1 LKGLVNHRVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFV---AGVSHGTLGEIFIRCNNVLYIRELP 67 (68)
T ss_dssp CGGGTTSEEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEE---TTEEEEECCSEEECGGGEEEEEECC
T ss_pred ChhHCCCEEEEEEEcCCEEEEEEEEEECCcCceEEeeEEEEe---cCCcccCcCeEEEECCEEEEEEeCC
Confidence 57899999999999 567899999999999999999999985 5566889999999999999998665
No 11
>d1d3ba_ b.38.1.1 (A:) D3 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.91 E-value=1.6e-24 Score=126.80 Aligned_cols=70 Identities=19% Similarity=0.327 Sum_probs=64.3
Q ss_pred CcHHHHhhhcCCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEeC
Q 041342 9 LPSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPG 81 (87)
Q Consensus 9 ~Pl~~L~~~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~~ 81 (87)
.|+.+|+++.|++|+|+|+||++|+|+|.+||+|||++|+||+++. .++ +...++.+||||++|.+|...
T Consensus 2 ~Pl~~L~~~~g~~V~VeLkng~~~~G~L~~~D~~mNi~L~~~~~~~--~~~-~~~~~~~v~IRG~~I~~i~lp 71 (72)
T d1d3ba_ 2 VPIKVLHEAEGHIVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTY--RDG-RVAQLEQVYIRGCKIRFLILP 71 (72)
T ss_dssp CHHHHHHHTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC--TTS-CEEEEEEEEECGGGEEEEEEC
T ss_pred CchHHHHhcCCCEEEEEECCCeEEEEEEEEEcCCeeEEEEEEEEEc--CCC-cEeEcCeEEEECCEEEEEEcC
Confidence 6999999999999999999999999999999999999999999875 234 467899999999999999865
No 12
>d1b34a_ b.38.1.1 (A:) D1 core SNRNP protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.86 E-value=1.3e-21 Score=116.44 Aligned_cols=69 Identities=20% Similarity=0.313 Sum_probs=62.4
Q ss_pred HHHHhhhcCCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEeCC
Q 041342 11 SELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 82 (87)
Q Consensus 11 l~~L~~~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~~~ 82 (87)
+.+|+++.|++|.|+|+||..|+|+|.++|.|||++|+||+++. .+| +...++.+||||++|.+|+..+
T Consensus 3 v~fL~~~~g~~V~VeLkng~~~~G~L~~~D~~MNl~L~~~~~~~--~~~-~~~~~~~v~IRG~~Ir~i~lPd 71 (80)
T d1b34a_ 3 VRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTL--KNR-EPVQLETLSIRGNNIRYFILPD 71 (80)
T ss_dssp HHHHHTCTTCEEEEEETTCCEEEEEEEEECTTCCEEEEEEEEEC--TTS-CCEEEEEEEECGGGEEEEECCT
T ss_pred HHHHHHcCCCEEEEEECCCCEEEEEEEEEcCCcEEEEEEEEEEc--CCC-CEEEcccEEEcCCEEEEEECCC
Confidence 57899999999999999999999999999999999999999874 234 4678999999999999998754
No 13
>d1m5q1_ b.38.1.1 (1:) Sm-Like archaeal protein Smap3 {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=99.81 E-value=4.5e-20 Score=118.03 Aligned_cols=67 Identities=16% Similarity=0.323 Sum_probs=60.5
Q ss_pred HHHHhhhcCCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEeCCCC
Q 041342 11 SELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSP 84 (87)
Q Consensus 11 l~~L~~~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~~~~p 84 (87)
++.|.+++|++|.|+|+||+.|+|+|.+||+|||++|+||++. +++ .++.++|||++|.+|...+.+
T Consensus 2 ~~~L~~~~gk~V~VeLkng~~~~G~L~~~D~~mNivL~da~~~----~~~---k~~~v~IRG~~I~~I~~~e~~ 68 (127)
T d1m5q1_ 2 VAELNNLLGREVQVVLSNGEVYKGVLHAVDNQLNIVLANASNK----AGE---KFNRVFIMYRYIVHIDSTERR 68 (127)
T ss_dssp HHHHHTTTTSEEEEEETTSCEEEEEEEEECTTCCEEEEEEEET----TCC---EEEEEEECGGGEEEEEECSCC
T ss_pred hhHHHHhCCCEEEEEECCCCEEEEEEEEECCCceEEEeEEEEC----CCC---cccEEEEeCCeEEEEEcchhh
Confidence 5789999999999999999999999999999999999999875 333 578899999999999988765
No 14
>d2vxfa1 b.38.1.5 (A:6-85) LSM14 homolog A (Lsm14a) {Zebrafish (Danio rerio) [TaxId: 7955]}
Probab=98.15 E-value=8.8e-06 Score=47.06 Aligned_cols=70 Identities=27% Similarity=0.409 Sum_probs=57.5
Q ss_pred hcCCEEEEEEcCCcEEEEEEEEecc-ccceEEcceEEEEEcc---CCe---eeEeeCeEEEcCCcEEEEEeCCCCCC
Q 041342 17 CIGSKIWVIMKGDKELVGTLKGFDV-YVNMVLEDVTEYEITA---EGR---RITKLDQILLNGNNIAILVPGGSPDP 86 (87)
Q Consensus 17 ~l~k~V~V~l~dgr~~~G~L~~~D~-~mNlvL~~~~e~~~~~---~g~---~~~~~g~v~IRG~~I~~I~~~~~p~~ 86 (87)
|+|+++.+..+.+-.|+|+|..+|. ..-+.|+|+.-+.++. ++. ...-++.++.||+.|..+...+.|+|
T Consensus 2 yIGs~IsLISk~dIRYeGiL~~Id~~~sTi~L~nVrsfGTEgR~~~~~ipp~~~vy~~IvFrgsDIKdL~v~e~p~p 78 (80)
T d2vxfa1 2 YIGSKISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSDIKDLTVCEPPKP 78 (80)
T ss_dssp STTSEEEEEETTSCEEEEEEEEEETTTTEEEEEEEEECCSTTSCCSSCCCCCCCCEEEEEEETTTEEEEEESSCCCC
T ss_pred ccCCEEEEEEcCCcEEEEEEEeeccccCEEEeeeeeEeecCCCCCCCccCCCCcceeEEEEcCcCcceEEeccCCCC
Confidence 6899999999999999999999994 6668999998765421 110 23567899999999999999998876
No 15
>d1biaa2 b.34.1.1 (A:271-317) Biotin repressor/biotin holoenzyme synthetase, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=97.44 E-value=0.00033 Score=36.19 Aligned_cols=47 Identities=26% Similarity=0.266 Sum_probs=35.9
Q ss_pred hcCCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEccCCeeeEeeCeEEEc
Q 041342 17 CIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLN 71 (87)
Q Consensus 17 ~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~~g~~~~~~g~v~IR 71 (87)
|++++|+|..- ++.+.|+..++|+...|+|+.. +|.+...-|.+.+|
T Consensus 1 f~gk~V~v~~g-~~~i~G~a~gId~~G~Lll~t~-------~g~~~~~sGEVSlR 47 (47)
T d1biaa2 1 FINRPVKLIIG-DKEIFGISRGIDKQGALLLEQD-------GIIKPWMGGEISLR 47 (47)
T ss_dssp TTTSEEEEEET-TEEEEEEEEEECTTSCEEEEET-------TEEEEESSCEEEEC
T ss_pred CCCCEEEEEEC-CeEEEEEEeeECCCCcEEEEEC-------CCEEEEEEEEEEeC
Confidence 68999999765 5789999999999999999743 23334455677665
No 16
>d1kq1a_ b.38.1.2 (A:) Pleiotropic translational regulator Hfq {Staphylococcus aureus [TaxId: 1280]}
Probab=96.56 E-value=0.0028 Score=34.35 Aligned_cols=33 Identities=15% Similarity=0.278 Sum_probs=28.1
Q ss_pred CCEEEEEEcCCcEEEEEEEEeccccceEEcceE
Q 041342 19 GSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVT 51 (87)
Q Consensus 19 ~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~ 51 (87)
...|+|.|.+|-.++|.+.+||+|.=+.-.+..
T Consensus 14 ~~~VtifL~nGvkl~G~I~~fD~ftvlL~~~~~ 46 (60)
T d1kq1a_ 14 QTEVTVFFLNGFQMKGVIEEYDKYVVSLNSQGK 46 (60)
T ss_dssp TCEEEEEETTSCEEEEEEEEECSSEEEEEETTE
T ss_pred CCcEEEEEECCcEEEEEEEEEcceEEEEEeCCc
Confidence 468999999999999999999999877655543
No 17
>d1u1sa1 b.38.1.2 (A:6-71) Pleiotropic translational regulator Hfq {Pseudomonas aeruginosa [TaxId: 287]}
Probab=96.38 E-value=0.002 Score=35.53 Aligned_cols=34 Identities=15% Similarity=0.346 Sum_probs=27.0
Q ss_pred HHhhhc--CCEEEEEEcCCcEEEEEEEEeccccceE
Q 041342 13 LIDRCI--GSKIWVIMKGDKELVGTLKGFDVYVNMV 46 (87)
Q Consensus 13 ~L~~~l--~k~V~V~l~dgr~~~G~L~~~D~~mNlv 46 (87)
+|..+. ...|+|.|.+|-.++|.+.+||+|.=+.
T Consensus 6 fLn~~rk~~~~VtifL~nGvkl~G~I~~fD~ftvLL 41 (66)
T d1u1sa1 6 YLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILL 41 (66)
T ss_dssp HHHHHHHTTCCEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred HHHHHHHcCCcEEEEEEcCcEEEEEEEEEcceEEEE
Confidence 344443 3579999999999999999999997543
No 18
>d1ycya1 b.38.1.4 (A:5-70) Hypothetical protein PF1955 {Pyrococcus furiosus [TaxId: 2261]}
Probab=95.37 E-value=0.066 Score=28.73 Aligned_cols=42 Identities=31% Similarity=0.514 Sum_probs=33.1
Q ss_pred HHHhhhcCCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEE
Q 041342 12 ELIDRCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYE 54 (87)
Q Consensus 12 ~~L~~~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~ 54 (87)
..|.++.|++|-|-......|.|+|.-||.- -+.|+|++.+.
T Consensus 5 ktL~~WKg~kvAv~vgsehSFtGiledFDeE-viLL~dV~D~~ 46 (66)
T d1ycya1 5 KVLKEWKGHKVAVSVGGDHSFTGTLEDFDEE-VILLKDVVDVI 46 (66)
T ss_dssp HHHHHHTTSEEEEEEC----CEEEEEEECSS-EEEEEEEEETT
T ss_pred HHHHHhCCcEEEEEecCcceeEEEhhhcCcc-eEeehhhHHHh
Confidence 4688999999999999999999999999975 47889998764
No 19
>d1ib8a1 b.38.2.1 (A:91-164) Hypothetical protein SP14.3 (SP0552) {Streptococcus pneumoniae [TaxId: 1313]}
Probab=94.07 E-value=0.039 Score=30.17 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=28.5
Q ss_pred HHHHhhhcCCEEEEEEc---CC-cEEEEEEEEeccccceEE
Q 041342 11 SELIDRCIGSKIWVIMK---GD-KELVGTLKGFDVYVNMVL 47 (87)
Q Consensus 11 l~~L~~~l~k~V~V~l~---dg-r~~~G~L~~~D~~mNlvL 47 (87)
.+.+..++|++|.|+|+ +| +.++|+|.++|+-. +.|
T Consensus 6 ~~~f~r~~G~~v~v~l~~p~~g~k~f~G~L~~~~~~~-i~l 45 (74)
T d1ib8a1 6 KDAVAGAVGKYIHVGLYQAIDKQKVFEGTLLAFEEDE-LTM 45 (74)
T ss_dssp HHHHHHHCSEEEEEECSSCSSSCSEEEEEEEEEETTE-EEE
T ss_pred HHHHHHhCCCEEEEEEecccCCceEEEEEEEeecCCe-EEE
Confidence 45678999999999985 34 59999999999753 444
No 20
>d2qqra1 b.34.9.1 (A:897-955) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]}
Probab=83.11 E-value=0.93 Score=23.79 Aligned_cols=23 Identities=13% Similarity=0.091 Sum_probs=20.7
Q ss_pred cCCEEEEEEcCCcEEEEEEEEec
Q 041342 18 IGSKIWVIMKGDKELVGTLKGFD 40 (87)
Q Consensus 18 l~k~V~V~l~dgr~~~G~L~~~D 40 (87)
+|.+|.-+.+|||.|.+++.+.-
T Consensus 5 ~Gq~VI~KhkNgryY~c~V~~~~ 27 (59)
T d2qqra1 5 AGQKVISKHKNGRFYQCEVVRLT 27 (59)
T ss_dssp TTCEEEEECTTSSEEEEEEEEEE
T ss_pred cccEEEEEccCCcEEEEEEEEee
Confidence 68899999999999999998864
No 21
>d1rqpa1 b.141.1.1 (A:193-298) 5'-fluoro-5'-deoxyadenosine synthase {Streptomyces cattleya [TaxId: 29303]}
Probab=77.99 E-value=0.8 Score=26.26 Aligned_cols=22 Identities=23% Similarity=0.416 Sum_probs=19.4
Q ss_pred cCCcEEEEEEEEec-cccceEEc
Q 041342 27 KGDKELVGTLKGFD-VYVNMVLE 48 (87)
Q Consensus 27 ~dgr~~~G~L~~~D-~~mNlvL~ 48 (87)
.+|..++|.+.-+| +|.|++..
T Consensus 5 ~~~~~i~G~V~~iDh~FGN~iTN 27 (106)
T d1rqpa1 5 QDGEALVGVVSAIDHPFGNVWTN 27 (106)
T ss_dssp EETTEEEEEEEEEETTTTEEEEE
T ss_pred ccCCEEEEEEEEEecCCCcEEEe
Confidence 36889999999999 69999985
No 22
>d2grea1 b.49.3.1 (A:74-186) Deblocking aminopeptidase YhfE {Bacillus cereus [TaxId: 1396]}
Probab=72.46 E-value=1.9 Score=24.86 Aligned_cols=22 Identities=18% Similarity=0.149 Sum_probs=19.4
Q ss_pred hhcCCEEEEEEcCCcEEEEEEE
Q 041342 16 RCIGSKIWVIMKGDKELVGTLK 37 (87)
Q Consensus 16 ~~l~k~V~V~l~dgr~~~G~L~ 37 (87)
.+.+++|+|..++|+.|.|++-
T Consensus 25 ~l~gq~V~I~t~~G~~i~Gvig 46 (113)
T d2grea1 25 SVEGEYCEIETSSGKTYTGTIL 46 (113)
T ss_dssp GTTTCEEEEECTTSCEEEEEEE
T ss_pred hcccCEEEEEcCCCCEEEEEEe
Confidence 4578999999999999999974
No 23
>d2z9ia2 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=72.38 E-value=1.9 Score=26.63 Aligned_cols=31 Identities=16% Similarity=0.092 Sum_probs=25.9
Q ss_pred CCEEEEEEcCCcEEEEEEEEeccccceEEcc
Q 041342 19 GSKIWVIMKGDKELVGTLKGFDVYVNMVLED 49 (87)
Q Consensus 19 ~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~ 49 (87)
..++.|.+.||+.+.+.+.++|....+.|-.
T Consensus 58 ~~~i~v~~~dg~~~~a~vi~~d~~~DlAll~ 88 (221)
T d2z9ia2 58 PPKTTVTFSDGRTAPFTVVGADPTSDIAVVR 88 (221)
T ss_dssp --EEEEEETTSCEECCEEEEEETTTTEEEEE
T ss_pred CceEEEEcCCceeeeeeeEeeccccceeeee
Confidence 3578999999999999999999999886643
No 24
>d1y0ya1 b.49.3.1 (A:73-163) Frv operon protein FrvX {Pyrococcus horikoshii [TaxId: 53953]}
Probab=69.31 E-value=3.1 Score=22.92 Aligned_cols=22 Identities=18% Similarity=0.148 Sum_probs=19.3
Q ss_pred hhcCCEEEEEEcCCcEEEEEEE
Q 041342 16 RCIGSKIWVIMKGDKELVGTLK 37 (87)
Q Consensus 16 ~~l~k~V~V~l~dgr~~~G~L~ 37 (87)
.+.+++|+|..++|+.+.|++-
T Consensus 25 ~~~gq~v~i~t~~g~~~~Gv~~ 46 (91)
T d1y0ya1 25 TLIAQRFKVWIDKGKFIYGVGA 46 (91)
T ss_dssp GTTTCEEEEEEETTEEEEEEEE
T ss_pred hcccCEEEEEeCCCCEEEEEEC
Confidence 4578999999999999999764
No 25
>d2qqra2 b.34.9.1 (A:956-1011) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]}
Probab=59.77 E-value=6.7 Score=20.07 Aligned_cols=24 Identities=8% Similarity=-0.044 Sum_probs=21.3
Q ss_pred cCCEEEEEEcCCcEEEEEEEEecc
Q 041342 18 IGSKIWVIMKGDKELVGTLKGFDV 41 (87)
Q Consensus 18 l~k~V~V~l~dgr~~~G~L~~~D~ 41 (87)
.|..|.|+.+||..|.++..+...
T Consensus 4 ~Ge~V~VrW~DG~~y~A~f~~~~~ 27 (56)
T d2qqra2 4 EGEVVQVRWTDGQVYGAKFVASHP 27 (56)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEEE
T ss_pred CCcEEEEEcCCCCEEEEEEEecce
Confidence 578899999999999999998763
No 26
>d1lcya2 b.47.1.1 (A:6-210) Mitochondrial serine protease HtrA2, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=58.65 E-value=7.4 Score=23.50 Aligned_cols=29 Identities=7% Similarity=0.121 Sum_probs=25.6
Q ss_pred CEEEEEEcCCcEEEEEEEEeccccceEEc
Q 041342 20 SKIWVIMKGDKELVGTLKGFDVYVNMVLE 48 (87)
Q Consensus 20 k~V~V~l~dgr~~~G~L~~~D~~mNlvL~ 48 (87)
.++.|...||+.+.+++.++|....+.|-
T Consensus 66 ~~i~V~~~~g~~~~a~vv~~d~~~dlall 94 (205)
T d1lcya2 66 RRVRVRLLSGDTYEAVVTAVDPVADIATL 94 (205)
T ss_dssp SEEEEECTTSCEEEEEEEEEETTTTEEEE
T ss_pred hhccccccccccccceeeeeecceeeEEE
Confidence 57899999999999999999998877664
No 27
>d1yloa1 b.49.3.1 (A:67-147) Aminopeptidase YpdE {Shigella flexneri [TaxId: 623]}
Probab=56.49 E-value=5.9 Score=21.32 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=19.6
Q ss_pred hhcCCEEEEEEcCCcEEEEEEEE
Q 041342 16 RCIGSKIWVIMKGDKELVGTLKG 38 (87)
Q Consensus 16 ~~l~k~V~V~l~dgr~~~G~L~~ 38 (87)
.+.+++|+|..++|+.+.|.+.+
T Consensus 25 ~~~gq~V~i~t~~G~~~~~~~~~ 47 (81)
T d1yloa1 25 ARQLQPVRITTREECKIPGLLDG 47 (81)
T ss_dssp GSSSEEEEEECTTCCEEEEEEEE
T ss_pred hcCCCEEEEEcCCCCCCceEECC
Confidence 45688999999999999998754
No 28
>d1m7ja1 b.92.1.6 (A:7-61) N-acyl-D-aminoacid amidohydrolase {Alcaligenes faecalis [TaxId: 511]}
Probab=55.05 E-value=9.8 Score=18.54 Aligned_cols=37 Identities=16% Similarity=0.192 Sum_probs=26.4
Q ss_pred eEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEeCCCC
Q 041342 45 MVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGSP 84 (87)
Q Consensus 45 lvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~~~~p 84 (87)
++++|+.-.. ..+. ....+.+.|++..|+.|.....+
T Consensus 4 llIkn~~i~d--~~~~-~~~~~di~I~~g~I~~Ig~~~~~ 40 (55)
T d1m7ja1 4 YILSGGTVID--GTNA-PGRLADVGVRGDRIAAVGDLSAS 40 (55)
T ss_dssp EEEESSEECC--SSSC-CCEECEEEEETTEEEEEECCTTS
T ss_pred EEEECCEEEC--CCCC-ceeEEEEEEECCEEEEEccCCCC
Confidence 7888887653 2222 34567999999999999865443
No 29
>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic domain {Escherichia coli [TaxId: 562]}
Probab=52.26 E-value=12 Score=23.64 Aligned_cols=30 Identities=17% Similarity=0.224 Sum_probs=26.1
Q ss_pred CEEEEEEcCCcEEEEEEEEeccccceEEcc
Q 041342 20 SKIWVIMKGDKELVGTLKGFDVYVNMVLED 49 (87)
Q Consensus 20 k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~ 49 (87)
.++.|.+.+++.+.+++.+.|....+.+-.
T Consensus 101 ~~~~v~~~~~~~~~a~~~~~d~~~dlavl~ 130 (249)
T d1ky9a2 101 TVIKVQLSDGRKFDAKMVGKDPRSDIALIQ 130 (249)
T ss_dssp EEEEEEETTSCEEEEEEEEEETTTTEEEEE
T ss_pred eeeeeeecccccccceeeEeccchhhceee
Confidence 368899999999999999999988887654
No 30
>d2d6fa1 b.38.3.1 (A:2-73) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=49.49 E-value=8 Score=20.73 Aligned_cols=36 Identities=22% Similarity=0.208 Sum_probs=26.1
Q ss_pred cCCEEEEEEcCCcEEEEEEEE-----eccccceEEcceEEEE
Q 041342 18 IGSKIWVIMKGDKELVGTLKG-----FDVYVNMVLEDVTEYE 54 (87)
Q Consensus 18 l~k~V~V~l~dgr~~~G~L~~-----~D~~mNlvL~~~~e~~ 54 (87)
+|-+|+|+ +++.+|+|+|.= =|.+.=|-|++-.-..
T Consensus 17 vGD~V~i~-~~~~~~eGilmP~~e~sd~~~iVlKL~nGYNiG 57 (72)
T d2d6fa1 17 VGDMVLVE-KPDVTYEGMVLDRADDADDRHIVLKLENGYNIG 57 (72)
T ss_dssp TTCEEEEE-CSSCEEEEEECCCCTTSCSSEEEEECTTSCEEE
T ss_pred CCCEEEEE-ECCcEEEEEEcCCcccCCCCEEEEEecCceeEe
Confidence 57899998 578999999982 3456666666665543
No 31
>d1yrra1 b.92.1.5 (A:1-53,A:351-382) N-acetylglucosamine-6-phosphate deacetylase, NagA {Escherichia coli [TaxId: 562]}
Probab=46.87 E-value=14 Score=19.64 Aligned_cols=17 Identities=12% Similarity=0.266 Sum_probs=12.1
Q ss_pred CeEEEcCCcEEEEEeCC
Q 041342 66 DQILLNGNNIAILVPGG 82 (87)
Q Consensus 66 g~v~IRG~~I~~I~~~~ 82 (87)
+.++|+|+.|..|.+..
T Consensus 19 ~~i~i~~g~I~~Ig~~~ 35 (85)
T d1yrra1 19 HAVVIADGLIKSVCPVA 35 (85)
T ss_dssp EEEEEETTEEEEEEEGG
T ss_pred cEEEEeccEEEEEcccc
Confidence 46788888888876543
No 32
>d1zq1a1 b.38.3.1 (A:2-75) Glutamyl-tRNA(Gln) amidotransferase subunit D, GatD {Pyrococcus abyssi [TaxId: 29292]}
Probab=46.25 E-value=7.6 Score=20.86 Aligned_cols=38 Identities=16% Similarity=0.170 Sum_probs=29.3
Q ss_pred cCCEEEEEEcCC---cEEEEEEE-----EeccccceEEcceEEEEE
Q 041342 18 IGSKIWVIMKGD---KELVGTLK-----GFDVYVNMVLEDVTEYEI 55 (87)
Q Consensus 18 l~k~V~V~l~dg---r~~~G~L~-----~~D~~mNlvL~~~~e~~~ 55 (87)
.|.+|+|..+++ .+|+|+|. +=|.+.=|-|+|-+-...
T Consensus 13 ~GD~Vri~~~~~~~~~~~eGilmP~~e~s~~~~ivlKL~nGYNiGi 58 (74)
T d1zq1a1 13 VGDFVRITKEEDGEEVTYEGYIMPPYELSAGDTLVLKLENGYNIGI 58 (74)
T ss_dssp TTCEEEEEEESSSSEEECCEEECCCCTTCCCSEEEEEETTSCEEEE
T ss_pred CCCEEEEEEecCCCceEEEEEEcCCcccCCCCEEEEEecCceeecc
Confidence 578999988765 48999998 556788888887765543
No 33
>d2qf3a1 b.47.1.1 (A:43-252) Stress sensor protease DegS, catalytic domain {Escherichia coli [TaxId: 562]}
Probab=43.92 E-value=13 Score=22.32 Aligned_cols=31 Identities=16% Similarity=0.312 Sum_probs=27.2
Q ss_pred CEEEEEEcCCcEEEEEEEEeccccceEEcce
Q 041342 20 SKIWVIMKGDKELVGTLKGFDVYVNMVLEDV 50 (87)
Q Consensus 20 k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~ 50 (87)
.+|.|.+.+++.+...+.+.|....+.|-..
T Consensus 60 ~~i~v~~~~~~~~~~~~~~~~~~~Dlall~~ 90 (210)
T d2qf3a1 60 DQIIVALQDGRVFEALLVGSDSLTDLAVLKI 90 (210)
T ss_dssp SEEEEECTTSCEEECEEEEEETTTTEEEEEC
T ss_pred cccccccccccceeeEEeccccccchhheec
Confidence 5799999999999999999999888877544
No 34
>d1ewna_ b.46.1.2 (A:) 3-methyladenine DNA glycosylase (AAG, ANPG, MPG) {Human (Homo sapiens) [TaxId: 9606]}
Probab=43.85 E-value=18 Score=22.89 Aligned_cols=34 Identities=18% Similarity=0.271 Sum_probs=28.8
Q ss_pred cHHHHhhhcCCEEEEEEcCCcEEEEEEEEecccc
Q 041342 10 PSELIDRCIGSKIWVIMKGDKELVGTLKGFDVYV 43 (87)
Q Consensus 10 Pl~~L~~~l~k~V~V~l~dgr~~~G~L~~~D~~m 43 (87)
++.+=.++||+.+.-++.+|..+.|.++....|+
T Consensus 14 ~~~vA~~LLG~~Lv~~~~~g~~~~g~IvEtEAY~ 47 (214)
T d1ewna_ 14 AVPLARAFLGQVLVRRLPNGTELRGRIVETQAYL 47 (214)
T ss_dssp HHHHHHHHTTCEEEEECTTSCEEEEEEEEEEEEC
T ss_pred HHHHHHHhCCCEEEEEcCCCCEEEEEEEEEeccC
Confidence 4566678999999999999999999998877774
No 35
>d2zgwa1 b.34.1.1 (A:189-235) Biotin--[acetyl-CoA-carboxylase] ligase C-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Probab=41.43 E-value=17 Score=17.42 Aligned_cols=27 Identities=19% Similarity=0.418 Sum_probs=20.6
Q ss_pred EEEEEcCCcEEEEEEEEeccccceEEc
Q 041342 22 IWVIMKGDKELVGTLKGFDVYVNMVLE 48 (87)
Q Consensus 22 V~V~l~dgr~~~G~L~~~D~~mNlvL~ 48 (87)
|+|+.-..-+++|+-.-+|+|.-+++.
T Consensus 2 v~vkil~dg~~egiaedide~grli~r 28 (47)
T d2zgwa1 2 VRVKILGDGSFEGIAEDIDDFGRLIIR 28 (47)
T ss_dssp SEEEEESSSEEEEEEEEECTTSCEEEE
T ss_pred CcEEEecCCceechhhhhhhhceEEEE
Confidence 345555555679999999999988874
No 36
>d1vhea1 b.49.3.1 (A:73-162) Hypothetical protein YsdC {Bacillus subtilis [TaxId: 1423]}
Probab=39.59 E-value=15 Score=19.84 Aligned_cols=23 Identities=9% Similarity=0.354 Sum_probs=18.4
Q ss_pred hhhcCCEEEEEEcCCcEEEEEEEE
Q 041342 15 DRCIGSKIWVIMKGDKELVGTLKG 38 (87)
Q Consensus 15 ~~~l~k~V~V~l~dgr~~~G~L~~ 38 (87)
..+.+++|+|..++|+ +.|++-.
T Consensus 24 ~~~~gq~V~i~t~~g~-i~Gvig~ 46 (90)
T d1vhea1 24 QVMLAQRVTIVTKKGE-ITGVIGS 46 (90)
T ss_dssp GGTTTCEEEEEETTEE-EEEEEEC
T ss_pred hhcCCcEEEEEeCCCe-EEEEEcC
Confidence 3456899999999995 8898844
No 37
>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=37.22 E-value=8.6 Score=20.24 Aligned_cols=21 Identities=10% Similarity=0.014 Sum_probs=18.0
Q ss_pred EEEEEEcCCcEEEEEEEEecc
Q 041342 21 KIWVIMKGDKELVGTLKGFDV 41 (87)
Q Consensus 21 ~V~V~l~dgr~~~G~L~~~D~ 41 (87)
+|.|++-||..+.+.+...|.
T Consensus 7 ~i~iRlPdG~~~~~~F~~~~t 27 (82)
T d1h8ca_ 7 KLRIRTPSGEFLERRFLASNK 27 (82)
T ss_dssp EEEEECTTSCEEEEEECTTSB
T ss_pred EEEEECCCCCEEEEEECCCCc
Confidence 689999999999999877664
No 38
>d1nfga1 b.92.1.3 (A:1-51,A:382-457) D-hydantoinase {Burkholderia pickettii [TaxId: 329]}
Probab=36.47 E-value=27 Score=19.93 Aligned_cols=36 Identities=11% Similarity=0.195 Sum_probs=22.9
Q ss_pred cceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEeCCC
Q 041342 43 VNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGGS 83 (87)
Q Consensus 43 mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~~~~ 83 (87)
|.|+++|+.-.. .++ ..-+.+.|++..|+.|.....
T Consensus 1 mDllikn~~v~~--~~~---~~~~di~I~dg~I~~ig~~~~ 36 (127)
T d1nfga1 1 MDIIIKNGTIVT--ADG---ISRADLGIKDGKITQIGGALG 36 (127)
T ss_dssp CCEEEEEEEEEE--TTE---EEEEEEEEETTEEEEESSCCC
T ss_pred CcEEEECCEEEC--CCC---CEEEEEEEECCEEEEeeCCCC
Confidence 567888887653 122 233577888888888765543
No 39
>d2r8ca1 b.92.1.9 (A:2-57,A:369-414) Uncharacterized protein EAJ56179 {Unidentified organism [TaxId: 32644]}
Probab=35.78 E-value=30 Score=18.58 Aligned_cols=36 Identities=8% Similarity=0.082 Sum_probs=22.1
Q ss_pred eEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEeCC
Q 041342 45 MVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 82 (87)
Q Consensus 45 lvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~~~ 82 (87)
+++.|+.-.. ..+.....-..++|+|+.|..|.+..
T Consensus 3 ~l~~n~~v~d--~~~~~~~~~~~I~I~~g~I~~i~~~~ 38 (102)
T d2r8ca1 3 FLFRNGALLD--PDHPDLLQGFEILIEDGFIREVSDKP 38 (102)
T ss_dssp EEEEEEEECC--TTSSSCEEEEEEEEESSBEEEEESSC
T ss_pred EEEECeEEEC--CCCCCcccCcEEEEECCEEEEccccC
Confidence 5677776542 11222233457889999999987643
No 40
>d2vhla1 b.92.1.5 (A:3-57,A:359-394) N-acetylglucosamine-6-phosphate deacetylase, NagA {Bacillus subtilis [TaxId: 1423]}
Probab=33.66 E-value=33 Score=18.42 Aligned_cols=34 Identities=12% Similarity=0.260 Sum_probs=22.6
Q ss_pred ceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEeC
Q 041342 44 NMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPG 81 (87)
Q Consensus 44 NlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~~ 81 (87)
+|+|+||.... .++ ...-|.++|++.-|..|...
T Consensus 2 ~llIkNa~Ivt--~~~--ii~~G~V~I~dGkI~~Ig~~ 35 (91)
T d2vhla1 2 SLLIKDIAIVT--ENE--VIKNGYVGINDGKISTVSTE 35 (91)
T ss_dssp CEEEEEEEEEC--SSC--EEEEEEEEEETTEEEEEESS
T ss_pred CEEEEeeEEEC--CCC--cEEeEEEEEeccEEEEEecc
Confidence 57788887763 122 33447888888888888653
No 41
>d1vhka1 b.122.1.2 (A:2-73) Hypothetical protein YqeU {Bacillus subtilis [TaxId: 1423]}
Probab=33.30 E-value=22 Score=18.10 Aligned_cols=29 Identities=14% Similarity=0.093 Sum_probs=24.0
Q ss_pred HHhhhcCCEEEEEEcCCcEEEEEEEEecc
Q 041342 13 LIDRCIGSKIWVIMKGDKELVGTLKGFDV 41 (87)
Q Consensus 13 ~L~~~l~k~V~V~l~dgr~~~G~L~~~D~ 41 (87)
+|+.-.|.+|.|.--+|..+.+.+..+|+
T Consensus 31 VLR~k~Gd~i~l~dg~g~~~~~~I~~i~k 59 (72)
T d1vhka1 31 VMRMNEGDQIICCSQDGFEAKCELQSVSK 59 (72)
T ss_dssp TTCCCTTCEEEEECTTSCEEEEEEEEECS
T ss_pred eeccCCCCEEEEEECCCCEEEEEEEEEEC
Confidence 45555678888888889999999999995
No 42
>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=31.51 E-value=32 Score=18.12 Aligned_cols=24 Identities=4% Similarity=-0.064 Sum_probs=20.1
Q ss_pred cCCEEEEEEcCCcEEEEEEEEecc
Q 041342 18 IGSKIWVIMKGDKELVGTLKGFDV 41 (87)
Q Consensus 18 l~k~V~V~l~dgr~~~G~L~~~D~ 41 (87)
.|..+.++..||..|+|++.+++.
T Consensus 28 ~G~~c~a~~~D~~wyRa~V~~~~~ 51 (90)
T d2hqxa1 28 RGEFCIAKFVDGEWYRARVEKVES 51 (90)
T ss_dssp TTCEEEEECTTSCEEEEEEEEEEE
T ss_pred CCCEEEEEEcCCCEEEEEEEEeCC
Confidence 467788888899999999999863
No 43
>d1k1da1 b.92.1.3 (A:1-52,A:385-460) D-hydantoinase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=31.33 E-value=42 Score=18.92 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=24.8
Q ss_pred cceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEeC
Q 041342 43 VNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPG 81 (87)
Q Consensus 43 mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~~ 81 (87)
|.++++||.... .++ ...+.++|++..|..|...
T Consensus 1 M~~likn~~v~~--~~~---~~~~Di~I~~g~I~~Ig~~ 34 (128)
T d1k1da1 1 MTKIIKNGTIVT--ATD---TYEAHLLIKDGKIAMIGQN 34 (128)
T ss_dssp CCEEEEEEEEEC--SSC---EEEEEEEECSSBEEEEESS
T ss_pred CCEEEECcEEEC--CCC---CEEeeEEEECCEEEEEcCC
Confidence 788899998763 222 2357899999999988764
No 44
>d2cr5a1 d.15.1.2 (A:8-103) UBX domain-containing protein 6 (Reproduction 8) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=31.29 E-value=18 Score=19.35 Aligned_cols=21 Identities=5% Similarity=-0.203 Sum_probs=18.1
Q ss_pred EEEEEEcCCcEEEEEEEEecc
Q 041342 21 KIWVIMKGDKELVGTLKGFDV 41 (87)
Q Consensus 21 ~V~V~l~dgr~~~G~L~~~D~ 41 (87)
+|.|++-||+.+..++..-|.
T Consensus 18 ~i~iRlPdG~r~~r~F~~~dt 38 (96)
T d2cr5a1 18 TVALRCPNGRVLRRRFFKSWN 38 (96)
T ss_dssp EEEEECTTSCEEEEEEESSSB
T ss_pred EEEEECCCCCEEEEEECCccc
Confidence 688899999999999977664
No 45
>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}
Probab=30.26 E-value=22 Score=18.56 Aligned_cols=34 Identities=12% Similarity=0.230 Sum_probs=23.3
Q ss_pred CCEEEEEEcCCcEEEEEEEEecc--ccceEEcceEE
Q 041342 19 GSKIWVIMKGDKELVGTLKGFDV--YVNMVLEDVTE 52 (87)
Q Consensus 19 ~k~V~V~l~dgr~~~G~L~~~D~--~mNlvL~~~~e 52 (87)
+.+.+|+|.||.+..+.+.|==. ...+..-|-+.
T Consensus 18 ~~~f~V~l~ng~~~~a~i~Gkmrk~ri~i~~GD~V~ 53 (71)
T d1ah9a_ 18 NTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVT 53 (71)
T ss_dssp SSEEEEEETTSCEEEEEECSSGGGTTCCCCTTCEEC
T ss_pred CCEEEEEeCCCCEEEEEccchhheeEEEecCCCEEE
Confidence 46889999999999998876542 23444444443
No 46
>d2pi2e1 b.40.4.3 (E:3-117) Replication protein A 14 KDa (RPA14) subunit {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.26 E-value=8.6 Score=21.96 Aligned_cols=24 Identities=8% Similarity=0.268 Sum_probs=17.8
Q ss_pred CCCCCCcCcHHHHhhhcCCEEEEE
Q 041342 2 AHNPSQLLPSELIDRCIGSKIWVI 25 (87)
Q Consensus 2 ~~~~~~~~Pl~~L~~~l~k~V~V~ 25 (87)
|..|++.---+.|.+|.|++|++.
T Consensus 3 ~~~p~pRVn~~~L~~~~Gk~V~iv 26 (115)
T d2pi2e1 3 MDLPRSRINAGMLAQFIDKPVCFV 26 (115)
T ss_dssp GGSCCEEECGGGGGGSTTCEEEEE
T ss_pred ccCCcceECHHHHHhhCCCeEEEE
Confidence 445555555678999999999873
No 47
>d1sg5a1 b.137.1.2 (A:1-86) Inhibitor of Rho Rof {Escherichia coli [TaxId: 562]}
Probab=28.98 E-value=11 Score=20.70 Aligned_cols=53 Identities=13% Similarity=0.053 Sum_probs=32.9
Q ss_pred hhcCCEEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEE
Q 041342 16 RCIGSKIWVIMKGDKELVGTLKGFDVYVNMVLEDVTEYEITAEGRRITKLDQILLNGNNIAILV 79 (87)
Q Consensus 16 ~~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~ 79 (87)
=..+..+.++++||..+.|+ +.|-+.| +-.|+..- ...-|...||=|.|+.|+
T Consensus 22 C~~~~~l~l~l~dG~~~~g~--a~D~~~~----~k~E~L~l-----~~~~~~~~irLD~I~si~ 74 (86)
T d1sg5a1 22 CQHHLMLTLELKDGEKLQAK--ASDLVSR----KNVEYLVV-----EAAGETRELRLDKITSFS 74 (86)
T ss_dssp HTTTTCEEEECTTTCCEEES--SCEEECC----SSSCEEEE-----EETTEEEEESTTCCSEEE
T ss_pred HHcCCcEEEEEeCCCEEEEE--EEEeEEe----cCeEEEEE-----ecCCCeEEEEeceEEeec
Confidence 34567999999999999993 3443333 22333221 111246778888888776
No 48
>d1o9ya_ b.139.1.1 (A:) Structural protein HrcQ2, C-terminal domain {Pseudomonas syringae [TaxId: 317]}
Probab=27.97 E-value=36 Score=17.06 Aligned_cols=32 Identities=6% Similarity=-0.032 Sum_probs=24.2
Q ss_pred hcCCEEEEEEcCCcEEEEEEEEeccccceEEc
Q 041342 17 CIGSKIWVIMKGDKELVGTLKGFDVYVNMVLE 48 (87)
Q Consensus 17 ~l~k~V~V~l~dgr~~~G~L~~~D~~mNlvL~ 48 (87)
..+..|.+...+-..++|.|..+|...=+.++
T Consensus 37 ~~~~~V~l~v~g~~i~~G~l~~~~~~~av~It 68 (71)
T d1o9ya_ 37 ISPGHATLCHGEQVVAEGELVDVEGRLGLQIT 68 (71)
T ss_dssp SCTTEEEEEETTEEEEEEEEEEETTEEEEEEE
T ss_pred CCCCCEEEEECCEEEEEEEEEEECCEEEEEEE
Confidence 34568888887777899999999976655444
No 49
>d1vhoa1 b.49.3.1 (A:70-152) Putative endoglucanase TM1048 {Thermotoga maritima [TaxId: 2336]}
Probab=26.58 E-value=20 Score=19.08 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=16.0
Q ss_pred hhhcCCEEEEEEcCCcEEEEEEE
Q 041342 15 DRCIGSKIWVIMKGDKELVGTLK 37 (87)
Q Consensus 15 ~~~l~k~V~V~l~dgr~~~G~L~ 37 (87)
+.+.+++|+|..++|. +.|++-
T Consensus 23 ~~l~gq~v~i~t~~g~-v~Gvig 44 (83)
T d1vhoa1 23 KVVYASKVRIYTKNGI-ERGVIG 44 (83)
T ss_dssp ---CCCEEEEEETTEE-EEEETT
T ss_pred hhcCCCEEEEEcCCCc-EEEEEc
Confidence 3567899999999884 779974
No 50
>d3d37a1 b.106.1.1 (A:6-178) Baseplate protein gpP {Neisseria meningitidis [TaxId: 487]}
Probab=25.45 E-value=34 Score=19.79 Aligned_cols=28 Identities=18% Similarity=0.252 Sum_probs=21.9
Q ss_pred HHhhhcCCEEEEEEcCCcEEEEEEEEec
Q 041342 13 LIDRCIGSKIWVIMKGDKELVGTLKGFD 40 (87)
Q Consensus 13 ~L~~~l~k~V~V~l~dgr~~~G~L~~~D 40 (87)
.+....|.++.|.+-+.+.+.|.+..+.
T Consensus 45 ~~~~~~G~~v~v~ig~~~~~~G~V~~~~ 72 (173)
T d3d37a1 45 AIPDLSGESCEVVIDGQIVMTGIIGSQR 72 (173)
T ss_dssp --CCCTTCEEEEEETTEEEEEEEEEEEE
T ss_pred cchhcCCCEEEEEEcCCcEEEEEEEEEE
Confidence 3456689999999998899999986654
No 51
>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.99 E-value=39 Score=16.46 Aligned_cols=26 Identities=19% Similarity=0.135 Sum_probs=19.3
Q ss_pred CCEEEEEEc-CCcEEEEEEEEeccccc
Q 041342 19 GSKIWVIMK-GDKELVGTLKGFDVYVN 44 (87)
Q Consensus 19 ~k~V~V~l~-dgr~~~G~L~~~D~~mN 44 (87)
|........ ||+.|++++.+++.-.|
T Consensus 7 G~~C~A~~s~Dg~wYRA~I~~v~~~~~ 33 (59)
T d1mhna_ 7 GDKCSAIWSEDGCIYPATIASIDFKRE 33 (59)
T ss_dssp TCEEEEECTTTSCEEEEEEEEEETTTT
T ss_pred CCEEEEEECCCCCEEEEEEEEEcCCCC
Confidence 555666664 89999999999865443
No 52
>d2b9va2 c.69.1.21 (A:50-434) Alpha-amino acid ester hydrolase {Acetobacter pasteurianus [TaxId: 438]}
Probab=24.26 E-value=13 Score=24.40 Aligned_cols=32 Identities=19% Similarity=0.264 Sum_probs=21.0
Q ss_pred CCcCcHHHHhhhcCCEEEEEEcCCcEEEEEEE
Q 041342 6 SQLLPSELIDRCIGSKIWVIMKGDKELVGTLK 37 (87)
Q Consensus 6 ~~~~Pl~~L~~~l~k~V~V~l~dgr~~~G~L~ 37 (87)
++..|-..-+.++.+.|.|.++||..+.+.|.
T Consensus 15 ~~~~p~~~~~~~~~~~v~ipmrDG~~L~~~v~ 46 (385)
T d2b9va2 15 SVHMPTDQQRDYIKREVMVPMRDGVKLYTVIV 46 (385)
T ss_dssp --------CCSEEEEEEEEECTTSCEEEEEEE
T ss_pred cccCCCccCCCCeEeEEEEECCCCCEEEEEEE
Confidence 35677777777888999999999999888765
No 53
>d2qs8a1 b.92.1.9 (A:7-63,A:374-412) Xaa-Pro dipeptidase {Alteromonas macleodii [TaxId: 28108]}
Probab=24.18 E-value=51 Score=17.56 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=16.4
Q ss_pred eEeeCeEEEcCCcEEEEEeCCC
Q 041342 62 ITKLDQILLNGNNIAILVPGGS 83 (87)
Q Consensus 62 ~~~~g~v~IRG~~I~~I~~~~~ 83 (87)
...-..+.|+++.|..|.....
T Consensus 18 ~~~~~~I~I~~~~I~~V~~~~~ 39 (96)
T d2qs8a1 18 VQSRISIVIDGNIISDIKKGFI 39 (96)
T ss_dssp CEEEEEEEEETTEEEEEEESCC
T ss_pred cccCceEEEECCEEEEEccccc
Confidence 4455688999999999987543
No 54
>d1nxza1 b.122.1.2 (A:2-73) Hypothetical protein HI0303 {Haemophilus influenzae [TaxId: 727]}
Probab=24.01 E-value=32 Score=17.27 Aligned_cols=29 Identities=3% Similarity=0.023 Sum_probs=22.9
Q ss_pred HHhhhcCCEEEEEEcCCcEEEEEEEEecc
Q 041342 13 LIDRCIGSKIWVIMKGDKELVGTLKGFDV 41 (87)
Q Consensus 13 ~L~~~l~k~V~V~l~dgr~~~G~L~~~D~ 41 (87)
+|+--.|.+|.+.--+|..|.+++...++
T Consensus 30 VLR~k~Gd~v~l~dg~g~~~~~~I~~i~k 58 (72)
T d1nxza1 30 VLRMTEGEQLELFDGSNHIYPAKIIESNK 58 (72)
T ss_dssp TSCCCTTCEEEEECSSSEEEEEEEEEEET
T ss_pred eeCCCCCCEEEEEeCCCCEEEEEEEEEeC
Confidence 34445577888888889999999999874
No 55
>d1onwa1 b.92.1.7 (A:1-62,A:347-389) Isoaspartyl dipeptidase {Escherichia coli [TaxId: 562]}
Probab=24.00 E-value=54 Score=17.76 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=21.3
Q ss_pred eEEcceEEEEEccCCeeeEeeCeEEEcCCcEEEEEeCC
Q 041342 45 MVLEDVTEYEITAEGRRITKLDQILLNGNNIAILVPGG 82 (87)
Q Consensus 45 lvL~~~~e~~~~~~g~~~~~~g~v~IRG~~I~~I~~~~ 82 (87)
++|+||..+. ++ .+..+.++|.+..|+.|....
T Consensus 10 llikna~i~~--~~---~~~~~dI~I~~g~I~~I~~~~ 42 (105)
T d1onwa1 10 TLLQGAHLYA--PE---DRGICDVLVANGKIIAVASNI 42 (105)
T ss_dssp EEEESCEEES--SS---EEEECEEEEETTEEEEEETTC
T ss_pred EEEECcEEEc--CC---CCeeeeEEEECCEEEEeccCc
Confidence 5667776552 11 234567888888888887543
No 56
>d2p5zx2 b.106.1.1 (X:15-201) Hypothetical protein c3393 {Escherichia coli o6 [TaxId: 217992]}
Probab=22.67 E-value=58 Score=19.24 Aligned_cols=27 Identities=15% Similarity=0.220 Sum_probs=20.8
Q ss_pred HhhhcCCEEEEEEcC-----------CcEEEEEEEEec
Q 041342 14 IDRCIGSKIWVIMKG-----------DKELVGTLKGFD 40 (87)
Q Consensus 14 L~~~l~k~V~V~l~d-----------gr~~~G~L~~~D 40 (87)
+.+++++.+.+.+.. -|.+.|.+.++-
T Consensus 42 ~~~llg~~~~l~~~~~~~~~~~~~~~~r~f~GiVt~~~ 79 (187)
T d2p5zx2 42 PESVLMQDGAFSLTAPPVQGMPVQTALRTLHGVITGFK 79 (187)
T ss_dssp GGGTTTCEEEEEECC----------CCEEEEEEEEEEE
T ss_pred HHHHcCCccceEEEecccccccCCCceEEEEEEEEEEE
Confidence 567899999888753 367889988766
No 57
>d1c3ga2 b.4.1.1 (A:260-349) Heat shock protein 40 Sis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=22.41 E-value=19 Score=19.09 Aligned_cols=28 Identities=14% Similarity=0.133 Sum_probs=22.6
Q ss_pred cCcHHHHhhhcCCEEEEEEcCCcEEEEE
Q 041342 8 LLPSELIDRCIGSKIWVIMKGDKELVGT 35 (87)
Q Consensus 8 ~~Pl~~L~~~l~k~V~V~l~dgr~~~G~ 35 (87)
..++++...++|.++.|..-||+.+.=+
T Consensus 12 ~~~I~~~eal~G~~~~i~~~dG~~i~i~ 39 (90)
T d1c3ga2 12 TLPLSFKESLLGFSKTIQTIDGRTLPLS 39 (90)
T ss_dssp EECCBHHHHHHCEEEEEECSSSCEEEEE
T ss_pred EEEeCHHHHhcCCeEEEecccccceecc
Confidence 4567788889999999999999876533
No 58
>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.11 E-value=45 Score=16.15 Aligned_cols=26 Identities=8% Similarity=0.099 Sum_probs=19.9
Q ss_pred CCEEEEEEc-CCcEEEEEEEEeccccc
Q 041342 19 GSKIWVIMK-GDKELVGTLKGFDVYVN 44 (87)
Q Consensus 19 ~k~V~V~l~-dgr~~~G~L~~~D~~mN 44 (87)
|........ ||.-|++++.+++...+
T Consensus 6 G~~c~A~~~~D~~wYRA~I~~i~~~~~ 32 (60)
T d2d9ta1 6 GDECFALYWEDNKFYRAEVEALHSSGM 32 (60)
T ss_dssp TCEEEEECTTTCCEEEEEEEEECSSSS
T ss_pred CCEEEEEECCCCCEEEEEEEEEcCCCC
Confidence 556666654 89999999999986544
No 59
>d1i42a_ d.15.1.2 (A:) p47 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=20.74 E-value=38 Score=17.80 Aligned_cols=21 Identities=14% Similarity=0.132 Sum_probs=17.8
Q ss_pred EEEEEEcCCcEEEEEEEEecc
Q 041342 21 KIWVIMKGDKELVGTLKGFDV 41 (87)
Q Consensus 21 ~V~V~l~dgr~~~G~L~~~D~ 41 (87)
+|.|++-||..+..++..-|.
T Consensus 16 ~I~iRlPdG~~~~~~F~~~~t 36 (89)
T d1i42a_ 16 NIQIRLADGGRLVQKFNHSHR 36 (89)
T ss_dssp EEEEEETTTCCEEEEECSSSC
T ss_pred EEEEEcCCCCEEEEEECCchh
Confidence 799999999999999866554
Done!