Query 041343
Match_columns 197
No_of_seqs 122 out of 1554
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 06:11:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041343.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041343hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0156 Cytochrome P450 CYP2 s 100.0 2.1E-35 4.6E-40 243.4 10.8 178 17-197 107-442 (489)
2 KOG0158 Cytochrome P450 CYP3/C 100.0 1.2E-34 2.7E-39 237.0 10.4 94 103-197 326-450 (499)
3 PLN02290 cytokinin trans-hydro 100.0 5.7E-32 1.2E-36 226.9 12.3 92 103-197 348-469 (516)
4 KOG0157 Cytochrome P450 CYP4/C 100.0 1.1E-31 2.3E-36 223.7 10.8 111 87-197 299-450 (497)
5 KOG0159 Cytochrome P450 CYP11/ 100.0 2.3E-31 4.9E-36 214.8 11.4 93 103-196 348-471 (519)
6 PLN02738 carotene beta-ring hy 100.0 6.7E-31 1.5E-35 223.8 13.0 95 103-197 423-548 (633)
7 PLN02971 tryptophan N-hydroxyl 100.0 8.8E-31 1.9E-35 220.8 12.8 95 103-197 359-486 (543)
8 PLN02500 cytochrome P450 90B1 100.0 9.6E-31 2.1E-35 218.2 12.8 95 103-197 311-446 (490)
9 PTZ00404 cytochrome P450; Prov 100.0 3.1E-31 6.8E-36 220.7 9.7 90 103-197 315-436 (482)
10 PLN02183 ferulate 5-hydroxylas 100.0 1.1E-30 2.4E-35 219.0 12.0 95 103-197 336-461 (516)
11 PLN00110 flavonoid 3',5'-hydro 100.0 1.9E-30 4.1E-35 217.0 12.3 95 103-197 321-449 (504)
12 PLN03234 cytochrome P450 83B1; 100.0 3.4E-30 7.3E-35 215.3 12.0 95 103-197 320-448 (499)
13 PLN02687 flavonoid 3'-monooxyg 100.0 3.8E-30 8.2E-35 215.9 12.2 95 103-197 329-458 (517)
14 PLN02426 cytochrome P450, fami 100.0 5.9E-30 1.3E-34 213.7 12.9 95 103-197 325-452 (502)
15 PLN02394 trans-cinnamate 4-mon 100.0 9.6E-30 2.1E-34 212.8 13.3 95 103-197 325-452 (503)
16 PLN02169 fatty acid (omega-1)- 100.0 5.1E-30 1.1E-34 214.1 10.5 90 103-197 333-454 (500)
17 PLN03195 fatty acid omega-hydr 100.0 8E-30 1.7E-34 213.9 11.2 95 103-197 324-470 (516)
18 PLN02966 cytochrome P450 83A1 100.0 1.4E-29 2.9E-34 211.8 12.1 95 103-197 321-449 (502)
19 PF00067 p450: Cytochrome P450 100.0 6.7E-30 1.4E-34 209.4 7.3 95 103-197 294-419 (463)
20 PLN03112 cytochrome P450 famil 100.0 3.2E-29 7E-34 210.1 11.4 95 103-197 328-457 (514)
21 PLN02655 ent-kaurene oxidase 100.0 5.7E-29 1.2E-33 206.4 11.9 94 103-197 294-417 (466)
22 PLN02936 epsilon-ring hydroxyl 100.0 1.6E-28 3.4E-33 204.8 13.6 95 103-197 310-436 (489)
23 PLN03141 3-epi-6-deoxocathaste 100.0 4.2E-28 9.1E-33 200.5 11.8 91 103-197 283-407 (452)
24 PLN02774 brassinosteroid-6-oxi 100.0 6.4E-28 1.4E-32 200.0 12.2 92 103-197 296-420 (463)
25 PLN03018 homomethionine N-hydr 100.0 7.5E-28 1.6E-32 202.4 12.2 95 103-197 346-476 (534)
26 PLN02196 abscisic acid 8'-hydr 99.9 1E-27 2.2E-32 198.7 10.8 90 103-197 296-418 (463)
27 PLN02302 ent-kaurenoic acid ox 99.9 3.4E-27 7.4E-32 196.8 12.5 91 103-197 319-443 (490)
28 PLN02987 Cytochrome P450, fami 99.9 4.9E-26 1.1E-30 188.9 12.6 94 103-197 299-425 (472)
29 PLN00168 Cytochrome P450; Prov 99.9 3.2E-26 7E-31 192.2 8.5 110 88-197 315-469 (519)
30 PLN02648 allene oxide synthase 99.9 1.4E-23 3E-28 174.1 10.9 95 103-197 305-440 (480)
31 KOG0684 Cytochrome P450 [Secon 99.9 2.7E-24 5.9E-29 170.8 6.3 102 96-197 294-438 (486)
32 COG2124 CypX Cytochrome P450 [ 99.9 7.4E-23 1.6E-27 167.2 7.8 58 130-197 280-366 (411)
33 PLN00168 Cytochrome P450; Prov 94.3 0.3 6.5E-06 41.5 8.4 38 28-65 126-201 (519)
34 PF08492 SRP72: SRP72 RNA-bind 69.6 2 4.2E-05 25.2 0.5 8 162-169 44-51 (59)
35 KOG3506 40S ribosomal protein 52.9 6.4 0.00014 22.5 0.6 10 182-191 13-22 (56)
36 COG2101 SPT15 TATA-box binding 34.7 15 0.00034 26.5 0.4 35 159-194 35-70 (185)
37 PF14394 DUF4423: Domain of un 29.7 77 0.0017 22.9 3.3 49 2-63 23-74 (171)
38 PF07886 BA14K: BA14K-like pro 29.7 40 0.00086 16.9 1.3 16 176-191 16-31 (31)
39 cd04518 TBP_archaea archaeal T 27.3 18 0.00039 26.2 -0.3 34 159-193 29-63 (174)
40 TIGR02147 Fsuc_second hypothet 24.6 3E+02 0.0066 21.5 6.0 49 2-62 121-171 (271)
41 PF15054 DUF4535: Domain of un 23.2 20 0.00044 19.8 -0.5 16 180-197 3-18 (46)
42 PRK00394 transcription factor; 21.3 31 0.00068 25.1 -0.0 35 159-193 28-62 (179)
43 PF15203 TMEM95: TMEM95 family 21.0 63 0.0014 21.9 1.4 37 5-50 53-89 (152)
44 KOG2376 Signal recognition par 20.2 46 0.001 29.0 0.8 8 162-169 582-589 (652)
No 1
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.1e-35 Score=243.41 Aligned_cols=178 Identities=28% Similarity=0.386 Sum_probs=143.0
Q ss_pred ecCCCcccccCCCcchHHHHhhhhccc-cchhhhh------------------------------------HHHHHHHHc
Q 041343 17 SRAQDLHFRPGGGQTHWASHGRIIISA-FAIDKLK------------------------------------ADIIAHTAF 59 (197)
Q Consensus 17 ~~~~~~~~~~~~~g~~wk~~Rk~~~~~-f~~~~~~------------------------------------~~~i~~~~f 59 (197)
..+.++.+++| |+.||.+||++... |+...++ .|+|++++|
T Consensus 107 ~~~~~i~~a~y--G~~Wr~~Rr~~~~~L~~~~~~~~~~~~R~~E~~~l~~~l~~~~~~~~vdl~~~l~~~~~nvI~~~~f 184 (489)
T KOG0156|consen 107 YGGKGIVFAPY--GDYWREMRRFALTELRSFGRGKSFMEIREEEVDELVKKLSKSKKGEPVDLSELLDLLVGNVICRMLF 184 (489)
T ss_pred CCCCceEeCCC--cHHHHHHHHHHHHHhcChhhhhhhHHHHHHHHHHHHHHHHhcCCCceeeHHHHHHHHHHHHHHHHHh
Confidence 36788999999 99999999998774 4433222 899999999
Q ss_pred CCCcccc-----hhHHHHHHHHHHHHHhhhhhcccC-ChhhHhh------------------------------------
Q 041343 60 GSSFAEG-----RETLEAQAELQECCAASISDIFIP-GSQHLYN------------------------------------ 97 (197)
Q Consensus 60 G~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~~~------------------------------------ 97 (197)
|++++.+ .++...+.+..+..+.....+++| ++.+++.
T Consensus 185 G~rf~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~~p~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~i~eh~~~~~~~~~~ 264 (489)
T KOG0156|consen 185 GRRFEEEDEEEFLELKELVEESLELLGSFNLSDYFPFLLRWLDGISGLEKRLKKVSKRLDEFLERIIDEHREKIGDEEGR 264 (489)
T ss_pred CCccccCCchHHHHHHHHHHHHHHHhCCccHHHHhhHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Confidence 9999742 235666777777777777777777 4444431
Q ss_pred --------------------------------------------HhhHH----HHHHHHHHHHHHHhCC-CCCCHHhhhh
Q 041343 98 --------------------------------------------GLALL----HWQAKLREEVLEYCGI-GIPDADILSN 128 (197)
Q Consensus 98 --------------------------------------------~l~ll----e~~~kl~~Ei~~~~~~-~~~~~~~~~~ 128 (197)
+++.| ++|+|+++||++++|. ..++.+|+.+
T Consensus 265 D~vD~lL~~~~~~~~~~~t~~~i~~~~~dl~~AGtdTta~Tl~Wa~a~Ll~~Pev~~K~qeEId~vvG~~r~v~e~D~~~ 344 (489)
T KOG0156|consen 265 DFVDALLKLMKEEKAEGLTDDHLKALILDLFLAGTDTTATTLEWAMAELLNNPEVQKKLQEEIDEVVGKGRLVSESDLPK 344 (489)
T ss_pred cHHHHHHHhhcccccCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCChhhhcc
Confidence 22233 9999999999999994 4499999999
Q ss_pred chhHHHHhhhcccccccccc-cccccc-----------------------------CCCCCCccCCCCCCCCcccCCCCC
Q 041343 129 LKLVNMVLLEALRLYSPVIR-LYRQGS-----------------------------QEDAEEFSPLRFINGVTKAARNPN 178 (197)
Q Consensus 129 l~yl~a~i~EslRl~~~~~~-~~r~~~-----------------------------~~dp~~F~P~R~~~~~~~~~~~~~ 178 (197)
+||++|+|+|++|++|++|. ++|.+. |+||++|+||||++.+.... ...
T Consensus 345 lpYL~Avi~E~~Rl~p~~Pl~~ph~~~~d~~i~Gy~IPkgT~v~vn~~ai~rDp~vw~dP~eF~PERFl~~~d~~~-~~~ 423 (489)
T KOG0156|consen 345 LPYLKAVIKETLRLHPPLPLLLPRETTEDTKIGGYDIPKGTTVLVNLWAIHRDPKVWEDPEEFKPERFLDSNDGKG-LDF 423 (489)
T ss_pred CHHHHHHHHHHHhcCCCccccccccccCCeeEcCEEcCCCCEEEEeehhhhcCCccCCCccccChhhhcCCccccC-Cce
Confidence 99999999999999999998 677776 99999999999999741222 678
Q ss_pred CccccCCCcccccCCccCC
Q 041343 179 AMLAFGAGPRACIGQKIEF 197 (197)
Q Consensus 179 ~~~~Fg~G~r~C~G~~lA~ 197 (197)
.++|||+|||+|||+.+|+
T Consensus 424 ~~iPFG~GRR~CpG~~La~ 442 (489)
T KOG0156|consen 424 KLIPFGSGRRICPGEGLAR 442 (489)
T ss_pred EecCCCCCcCCCCcHHHHH
Confidence 9999999999999999884
No 2
>KOG0158 consensus Cytochrome P450 CYP3/CYP5/CYP6/CYP9 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.2e-34 Score=236.96 Aligned_cols=94 Identities=43% Similarity=0.634 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHhCC-CCCCHHhhhhchhHHHHhhhcccccccccccccccc---------------------------
Q 041343 103 HWQAKLREEVLEYCGI-GIPDADILSNLKLVNMVLLEALRLYSPVIRLYRQGS--------------------------- 154 (197)
Q Consensus 103 e~~~kl~~Ei~~~~~~-~~~~~~~~~~l~yl~a~i~EslRl~~~~~~~~r~~~--------------------------- 154 (197)
++|+|||+||++++.+ +.++++.+++|+|+++||+||||+||+++.+.|++.
T Consensus 326 dvQ~kLreEI~~~~~~~~~ltyd~l~~L~YLd~Vi~ETLR~yP~~~~~~R~C~k~~~i~~~~~i~kG~~V~Ip~~alH~D 405 (499)
T KOG0158|consen 326 DVQDKLREEIDEVLEEKEGLTYDSLSKLKYLDMVIKETLRLYPPAPFLNRECTKDYEIPGGFVIPKGTPVMIPTYALHHD 405 (499)
T ss_pred HHHHHHHHHHHHHhcccCCCCHHHHhCCcHHHHHHHHHHhhCCCcccccceecCceecCCCeEeCCCCEEEeecccccCC
Confidence 9999999999999774 339999999999999999999999999998888876
Q ss_pred ---CCCCCCccCCCCCCCCcccCCCCCCccccCCCcccccCCccCC
Q 041343 155 ---QEDAEEFSPLRFINGVTKAARNPNAMLAFGAGPRACIGQKIEF 197 (197)
Q Consensus 155 ---~~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~lA~ 197 (197)
||||++|+||||.++... ..++..++|||.|||+|+|++||+
T Consensus 406 p~~~p~Pe~F~PERF~~~~~~-~~~~~~ylPFG~GPR~CIGmRfa~ 450 (499)
T KOG0158|consen 406 PEYWPEPEKFKPERFEEENNK-SRHPGAYLPFGVGPRNCIGMRFAL 450 (499)
T ss_pred cccCCCcccCCCccCCCCccc-ccCCccccCCCCCccccHHHHHHH
Confidence 999999999999987544 568899999999999999999984
No 3
>PLN02290 cytokinin trans-hydroxylase
Probab=99.97 E-value=5.7e-32 Score=226.85 Aligned_cols=92 Identities=46% Similarity=0.734 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHhhhhchhHHHHhhhcccccccccccccccc----------------------------
Q 041343 103 HWQAKLREEVLEYCGIGIPDADILSNLKLVNMVLLEALRLYSPVIRLYRQGS---------------------------- 154 (197)
Q Consensus 103 e~~~kl~~Ei~~~~~~~~~~~~~~~~l~yl~a~i~EslRl~~~~~~~~r~~~---------------------------- 154 (197)
++|+|+++||+++++++.+++++++++||++|||+||+|++|+++.++|.+.
T Consensus 348 ~vq~kl~~Ei~~v~~~~~~~~~~l~~lpYl~avi~EtlRl~p~~~~~~R~~~~d~~i~g~~IP~Gt~V~~~~~~~~rdp~ 427 (516)
T PLN02290 348 TWQDKVRAEVAEVCGGETPSVDHLSKLTLLNMVINESLRLYPPATLLPRMAFEDIKLGDLHIPKGLSIWIPVLAIHHSEE 427 (516)
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHhcChHHHHHHHHHHHcCCCccccceeecCCeeECCEEECCCCEEEecHHHhcCChh
Confidence 9999999999999997789999999999999999999999999998888776
Q ss_pred -C-CCCCCccCCCCCCCCcccCCCCCCccccCCCcccccCCccCC
Q 041343 155 -Q-EDAEEFSPLRFINGVTKAARNPNAMLAFGAGPRACIGQKIEF 197 (197)
Q Consensus 155 -~-~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~lA~ 197 (197)
| +||++|+||||++.. ......++|||+|+|.|+|++||+
T Consensus 428 ~~~~dP~~F~PeRfl~~~---~~~~~~~~pFG~G~R~C~G~~lA~ 469 (516)
T PLN02290 428 LWGKDANEFNPDRFAGRP---FAPGRHFIPFAAGPRNCIGQAFAM 469 (516)
T ss_pred hhCCChhhcCccccCCCC---CCCCCeEecCCCCCCCCccHHHHH
Confidence 8 899999999998542 123457999999999999999984
No 4
>KOG0157 consensus Cytochrome P450 CYP4/CYP19/CYP26 subfamilies [Secondary metabolites biosynthesis, transport and catabolism; Lipid transport and metabolism]
Probab=99.97 E-value=1.1e-31 Score=223.72 Aligned_cols=111 Identities=41% Similarity=0.647 Sum_probs=89.7
Q ss_pred cccCChhhHhhHhhHH--------HHHHHHHHHHHHHhCCCC--CCHHhhhhchhHHHHhhhcccccccccccccccc--
Q 041343 87 IFIPGSQHLYNGLALL--------HWQAKLREEVLEYCGIGI--PDADILSNLKLVNMVLLEALRLYSPVIRLYRQGS-- 154 (197)
Q Consensus 87 ~~~p~~~~~~~~l~ll--------e~~~kl~~Ei~~~~~~~~--~~~~~~~~l~yl~a~i~EslRl~~~~~~~~r~~~-- 154 (197)
.++++.+++..++++. ++|+|+++|+++++++.. .+....++|+|+++||+||||+|||+|...|.+.
T Consensus 299 f~faG~DTTss~ltw~l~~La~hP~vq~k~~eEi~~i~~~~~~~~~~~~~~~m~yl~~vi~EsLRLyppvp~~~R~~~~d 378 (497)
T KOG0157|consen 299 FMFAGHDTTSSALTWTLWLLAKHPEVQEKLREEVDEILGNRDDKWEVEKLDQMKYLEMVIKESLRLYPPVPLVARKATKD 378 (497)
T ss_pred heeeccchHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhCCCCCCCChhhhhhhHHHHHHHHHHhccCCCCchhhcccCCC
Confidence 3455556665555544 999999999999998332 2333444699999999999999999999888887
Q ss_pred ----------------------------CC-CCCCccCCCCCCCCcccCCCCCCccccCCCcccccCCccCC
Q 041343 155 ----------------------------QE-DAEEFSPLRFINGVTKAARNPNAMLAFGAGPRACIGQKIEF 197 (197)
Q Consensus 155 ----------------------------~~-dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~lA~ 197 (197)
|+ ||++|+||||.++.....++++.|+|||+|+|.|+|+.||+
T Consensus 379 ~~l~~g~~IPkG~~V~i~~~~~~r~~~~~~~dp~~F~PeRf~~~~~~~~~~~~~fipFsaGpR~CiG~~fA~ 450 (497)
T KOG0157|consen 379 VKLPGGYTIPKGTNVLISIYALHRDPRVWGEDPEEFDPERFLDGEEKAKRHPFAFIPFSAGPRNCIGQKFAM 450 (497)
T ss_pred eEcCCCcEeCCCCEEEEehHHhccCccccCCChhhcCccccCCCCCcCCCCCccccCCCCCcccchhHHHHH
Confidence 55 99999999999764444557899999999999999999985
No 5
>KOG0159 consensus Cytochrome P450 CYP11/CYP12/CYP24/CYP27 subfamilies [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.97 E-value=2.3e-31 Score=214.81 Aligned_cols=93 Identities=35% Similarity=0.509 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHhCC--CCCCHHhhhhchhHHHHhhhcccccccccccccccc--------------------------
Q 041343 103 HWQAKLREEVLEYCGI--GIPDADILSNLKLVNMVLLEALRLYSPVIRLYRQGS-------------------------- 154 (197)
Q Consensus 103 e~~~kl~~Ei~~~~~~--~~~~~~~~~~l~yl~a~i~EslRl~~~~~~~~r~~~-------------------------- 154 (197)
++|+++++|+.+++.. ..++.+.+.++|||.||||||+|+||.++.+.|...
T Consensus 348 ~~Q~~L~~Ei~~~~p~~~~~~~~~~l~~~pyLrAcIKEtlRlyPv~~~~~R~l~~D~vL~gY~vPagT~V~l~~~~~~r~ 427 (519)
T KOG0159|consen 348 EVQQRLREEILAVLPSGNSELTQKALTNMPYLRACIKETLRLYPVVPGNGRVLPKDLVLSGYHVPAGTLVVLFLYVLGRN 427 (519)
T ss_pred HHHHHHHHHHHhhCCCcccccchHHHhhCHHHHHHHHhhhceeccccccccccchhceeccceecCCCeEEEeehhhccC
Confidence 9999999999999984 578999999999999999999999999998877766
Q ss_pred ---CCCCCCccCCCCCCCCcccCCCCCCccccCCCcccccCCccC
Q 041343 155 ---QEDAEEFSPLRFINGVTKAARNPNAMLAFGAGPRACIGQKIE 196 (197)
Q Consensus 155 ---~~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~lA 196 (197)
|++|++|+||||++++. ...+++.++|||.|+|+|+|++||
T Consensus 428 ~~~F~~p~~F~PeRWL~~~~-~~~~pF~~LPFGfG~R~C~GRRiA 471 (519)
T KOG0159|consen 428 PAYFPDPEEFLPERWLKPST-KTIHPFASLPFGFGPRMCLGRRIA 471 (519)
T ss_pred hhhCCCccccChhhhccccc-CCCCCceecCCCCCccccchHHHH
Confidence 99999999999999854 356899999999999999999987
No 6
>PLN02738 carotene beta-ring hydroxylase
Probab=99.97 E-value=6.7e-31 Score=223.83 Aligned_cols=95 Identities=34% Similarity=0.487 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHhhhhchhHHHHhhhcccccccccccccccc----------------------------
Q 041343 103 HWQAKLREEVLEYCGIGIPDADILSNLKLVNMVLLEALRLYSPVIRLYRQGS---------------------------- 154 (197)
Q Consensus 103 e~~~kl~~Ei~~~~~~~~~~~~~~~~l~yl~a~i~EslRl~~~~~~~~r~~~---------------------------- 154 (197)
++|+|+++||++++++..++++++++|||++|||+|+||++|+++.+.|.+.
T Consensus 423 evq~kLreEl~~v~~~~~~t~edL~kLPYL~AVIkEtLRL~p~~p~~~R~a~~d~~i~gy~IPkGT~V~~s~~~ihrdp~ 502 (633)
T PLN02738 423 SVVAKLQEEVDSVLGDRFPTIEDMKKLKYTTRVINESLRLYPQPPVLIRRSLENDMLGGYPIKRGEDIFISVWNLHRSPK 502 (633)
T ss_pred HHHHHHHHHHHHhcCCCCCCHHHHccCHHHHHHHHHHHhcCCCccccceeeccCceECCEEECCCCEEEecHHHHhCCcc
Confidence 9999999999999987778999999999999999999999999998767655
Q ss_pred -CCCCCCccCCCCCCCCc--ccCCCCCCccccCCCcccccCCccCC
Q 041343 155 -QEDAEEFSPLRFINGVT--KAARNPNAMLAFGAGPRACIGQKIEF 197 (197)
Q Consensus 155 -~~dp~~F~P~R~~~~~~--~~~~~~~~~~~Fg~G~r~C~G~~lA~ 197 (197)
|+||++|+||||+++.. .....+..++|||.|+|.|+|++||+
T Consensus 503 ifpdP~~F~PERWl~~~~~~~~~~~~~~~vpFG~G~R~CiG~~lA~ 548 (633)
T PLN02738 503 HWDDAEKFNPERWPLDGPNPNETNQNFSYLPFGGGPRKCVGDMFAS 548 (633)
T ss_pred ccCCccccCcccCCCCCCCccccCCCCceeCCCCCCCCCcCHHHHH
Confidence 99999999999985322 22235678999999999999999985
No 7
>PLN02971 tryptophan N-hydroxylase
Probab=99.97 E-value=8.8e-31 Score=220.76 Aligned_cols=95 Identities=22% Similarity=0.303 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHhC-CCCCCHHhhhhchhHHHHhhhcccccccccc-cccccc--------------------------
Q 041343 103 HWQAKLREEVLEYCG-IGIPDADILSNLKLVNMVLLEALRLYSPVIR-LYRQGS-------------------------- 154 (197)
Q Consensus 103 e~~~kl~~Ei~~~~~-~~~~~~~~~~~l~yl~a~i~EslRl~~~~~~-~~r~~~-------------------------- 154 (197)
++|+|+++||+++++ ++.++++++++|||++|||+|++|++|+++. ++|.+.
T Consensus 359 evq~kl~~EI~~v~g~~~~~t~~d~~~LpYl~avi~E~lRl~p~~~~~~~r~~~~d~~~~G~~IpkGt~v~~~~~~~~~d 438 (543)
T PLN02971 359 EILHKAMEEIDRVVGKERFVQESDIPKLNYVKAIIREAFRLHPVAAFNLPHVALSDTTVAGYHIPKGSQVLLSRYGLGRN 438 (543)
T ss_pred HHHHHHHHHHHHHhCCCCCCCHHHhccCHHHHHHHHHHHhcCCCcccCcceecCCCeeECCEEECCCCEEEECcHHhcCC
Confidence 999999999999998 5779999999999999999999999999987 677664
Q ss_pred ---CCCCCCccCCCCCCCCccc--CCCCCCccccCCCcccccCCccCC
Q 041343 155 ---QEDAEEFSPLRFINGVTKA--ARNPNAMLAFGAGPRACIGQKIEF 197 (197)
Q Consensus 155 ---~~dp~~F~P~R~~~~~~~~--~~~~~~~~~Fg~G~r~C~G~~lA~ 197 (197)
|+||++|+||||++..... ...+..++|||+|+|.|+|++||+
T Consensus 439 ~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~ 486 (543)
T PLN02971 439 PKVWSDPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGCAAPALGT 486 (543)
T ss_pred hhhCCCccccCcccCCCCCccccccCCCCccCCCCCCCCCCCCHHHHH
Confidence 9999999999998753221 134678999999999999999984
No 8
>PLN02500 cytochrome P450 90B1
Probab=99.97 E-value=9.6e-31 Score=218.21 Aligned_cols=95 Identities=26% Similarity=0.411 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHhC------CCCCCHHhhhhchhHHHHhhhcccccccccccccccc----------------------
Q 041343 103 HWQAKLREEVLEYCG------IGIPDADILSNLKLVNMVLLEALRLYSPVIRLYRQGS---------------------- 154 (197)
Q Consensus 103 e~~~kl~~Ei~~~~~------~~~~~~~~~~~l~yl~a~i~EslRl~~~~~~~~r~~~---------------------- 154 (197)
++|+|+++||+++++ +..++.+|++++||++|||+|++|++|+++.++|.+.
T Consensus 311 evq~kl~~Ei~~v~~~~~~~~~~~~~~~d~~~lpyl~avikEtlRl~P~~~~~~R~~~~d~~~~G~~IPkGt~V~~~~~~ 390 (490)
T PLN02500 311 KAVQELREEHLEIARAKKQSGESELNWEDYKKMEFTQCVINETLRLGNVVRFLHRKALKDVRYKGYDIPSGWKVLPVIAA 390 (490)
T ss_pred HHHHHHHHHHHHHhhccccCCCCCCCHHHhccCHHHHHHHHHHHhcCCCccCeeeEeCCCceeCCEEECCCCEEEechhh
Confidence 999999999999863 3458999999999999999999999999998878776
Q ss_pred -------CCCCCCccCCCCCCCCcccC------CCCCCccccCCCcccccCCccCC
Q 041343 155 -------QEDAEEFSPLRFINGVTKAA------RNPNAMLAFGAGPRACIGQKIEF 197 (197)
Q Consensus 155 -------~~dp~~F~P~R~~~~~~~~~------~~~~~~~~Fg~G~r~C~G~~lA~ 197 (197)
|+||++|+||||++++.... ..+..++|||+|+|.|+|++||+
T Consensus 391 ~hrdp~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~~~lpFG~G~R~CiG~~~A~ 446 (490)
T PLN02500 391 VHLDSSLYDQPQLFNPWRWQQNNNRGGSSGSSSATTNNFMPFGGGPRLCAGSELAK 446 (490)
T ss_pred cccCcccCCCccccChhhccCCCcccccccccCCCCCCCcCCCCCCCCCCcHHHHH
Confidence 99999999999987532211 24578999999999999999984
No 9
>PTZ00404 cytochrome P450; Provisional
Probab=99.97 E-value=3.1e-31 Score=220.71 Aligned_cols=90 Identities=27% Similarity=0.354 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHhC-CCCCCHHhhhhchhHHHHhhhcccccccccc-cccccc--------------------------
Q 041343 103 HWQAKLREEVLEYCG-IGIPDADILSNLKLVNMVLLEALRLYSPVIR-LYRQGS-------------------------- 154 (197)
Q Consensus 103 e~~~kl~~Ei~~~~~-~~~~~~~~~~~l~yl~a~i~EslRl~~~~~~-~~r~~~-------------------------- 154 (197)
++|+|+++||+++++ .+.++++++++|||++|||+|+||++|+++. ++|.+.
T Consensus 315 ~vq~kl~~Ei~~v~~~~~~~~~~~l~~L~yl~avi~EtlRl~p~~~~~~~R~~~~d~~l~~g~~Ip~Gt~V~~~~~a~hr 394 (482)
T PTZ00404 315 EIQEKAYNEIKSTVNGRNKVLLSDRQSTPYTVAIIKETLRYKPVSPFGLPRSTSNDIIIGGGHFIPKDAQILINYYSLGR 394 (482)
T ss_pred HHHHHHHHHHHHHhcCCCCCCccccccChHHHHHHHHHHHhcCCcccccceeccCCEEecCCeEECCCCEEEeeHHHhhC
Confidence 999999999999998 4578999999999999999999999999986 677665
Q ss_pred ----CCCCCCccCCCCCCCCcccCCCCCCccccCCCcccccCCccCC
Q 041343 155 ----QEDAEEFSPLRFINGVTKAARNPNAMLAFGAGPRACIGQKIEF 197 (197)
Q Consensus 155 ----~~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~lA~ 197 (197)
|+||++|+||||+++ ..+..++|||+|+|.|+|++||+
T Consensus 395 dp~~~~dP~~F~PeRwl~~-----~~~~~~~pFg~G~R~C~G~~~A~ 436 (482)
T PTZ00404 395 NEKYFENPEQFDPSRFLNP-----DSNDAFMPFSIGPRNCVGQQFAQ 436 (482)
T ss_pred CccccCCccccCccccCCC-----CCCCceeccCCCCCCCccHHHHH
Confidence 999999999999864 24578999999999999999985
No 10
>PLN02183 ferulate 5-hydroxylase
Probab=99.97 E-value=1.1e-30 Score=219.03 Aligned_cols=95 Identities=24% Similarity=0.427 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHhC-CCCCCHHhhhhchhHHHHhhhcccccccccccccccc---------------------------
Q 041343 103 HWQAKLREEVLEYCG-IGIPDADILSNLKLVNMVLLEALRLYSPVIRLYRQGS--------------------------- 154 (197)
Q Consensus 103 e~~~kl~~Ei~~~~~-~~~~~~~~~~~l~yl~a~i~EslRl~~~~~~~~r~~~--------------------------- 154 (197)
++|+|+++||+++++ +..++.+++++++|++|||+|+||++|++|...|.+.
T Consensus 336 evq~kl~~Ei~~v~~~~~~~~~~~l~~L~yl~avi~EtlRl~p~~p~~~r~~~~d~~l~g~~IPkGt~V~~~~~~~hrd~ 415 (516)
T PLN02183 336 EDLKRVQQELADVVGLNRRVEESDLEKLTYLKCTLKETLRLHPPIPLLLHETAEDAEVAGYFIPKRSRVMINAWAIGRDK 415 (516)
T ss_pred HHHHHHHHHHHHHcCCCCCCCHHHhccChHHHHHHHHHhccCCCccceeeeccCceeECCEEECCCCEEEEehhhhcCCc
Confidence 999999999999998 5568999999999999999999999999998777665
Q ss_pred --CCCCCCccCCCCCCCCccc-CCCCCCccccCCCcccccCCccCC
Q 041343 155 --QEDAEEFSPLRFINGVTKA-ARNPNAMLAFGAGPRACIGQKIEF 197 (197)
Q Consensus 155 --~~dp~~F~P~R~~~~~~~~-~~~~~~~~~Fg~G~r~C~G~~lA~ 197 (197)
|+||++|+||||++++... ...+..++|||+|+|.|+|++||+
T Consensus 416 ~~~~dP~~F~PeRfl~~~~~~~~~~~~~~lpFG~G~R~CiG~~lA~ 461 (516)
T PLN02183 416 NSWEDPDTFKPSRFLKPGVPDFKGSHFEFIPFGSGRRSCPGMQLGL 461 (516)
T ss_pred cccCCccccCchhhCCCCCccccCCcceecCCCCCCCCCCChHHHH
Confidence 9999999999999753321 224568999999999999999984
No 11
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=99.97 E-value=1.9e-30 Score=216.99 Aligned_cols=95 Identities=25% Similarity=0.356 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHhC-CCCCCHHhhhhchhHHHHhhhcccccccccc-cccccc--------------------------
Q 041343 103 HWQAKLREEVLEYCG-IGIPDADILSNLKLVNMVLLEALRLYSPVIR-LYRQGS-------------------------- 154 (197)
Q Consensus 103 e~~~kl~~Ei~~~~~-~~~~~~~~~~~l~yl~a~i~EslRl~~~~~~-~~r~~~-------------------------- 154 (197)
++|+|+++|++++++ ...+++++++++||++|||+|++|++|+++. ++|.+.
T Consensus 321 ~~~~kl~~Ei~~~~~~~~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~R~~~~d~~~~g~~Ip~Gt~V~~~~~~~h~d 400 (504)
T PLN00110 321 SILKRAHEEMDQVIGRNRRLVESDLPKLPYLQAICKESFRKHPSTPLNLPRVSTQACEVNGYYIPKNTRLSVNIWAIGRD 400 (504)
T ss_pred HHHHHHHHHHHHHhCCCCCCCHHHhhcChHHHHHHHHHhcCCCCcccccccccCCCeeeCCEEECCCCEEEEeHHHhcCC
Confidence 899999999999998 4578999999999999999999999999987 677775
Q ss_pred ---CCCCCCccCCCCCCCCcccCC---CCCCccccCCCcccccCCccCC
Q 041343 155 ---QEDAEEFSPLRFINGVTKAAR---NPNAMLAFGAGPRACIGQKIEF 197 (197)
Q Consensus 155 ---~~dp~~F~P~R~~~~~~~~~~---~~~~~~~Fg~G~r~C~G~~lA~ 197 (197)
|+||++|+||||++....... .+..++|||+|+|.|+|++||+
T Consensus 401 ~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~ 449 (504)
T PLN00110 401 PDVWENPEEFRPERFLSEKNAKIDPRGNDFELIPFGAGRRICAGTRMGI 449 (504)
T ss_pred hhhcCCcccCCcccccCCCCcccccCCCeeeEeCCCCCCCCCCcHHHHH
Confidence 999999999999865322111 2357999999999999999984
No 12
>PLN03234 cytochrome P450 83B1; Provisional
Probab=99.97 E-value=3.4e-30 Score=215.34 Aligned_cols=95 Identities=26% Similarity=0.394 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHhCC-CCCCHHhhhhchhHHHHhhhcccccccccc-cccccc--------------------------
Q 041343 103 HWQAKLREEVLEYCGI-GIPDADILSNLKLVNMVLLEALRLYSPVIR-LYRQGS-------------------------- 154 (197)
Q Consensus 103 e~~~kl~~Ei~~~~~~-~~~~~~~~~~l~yl~a~i~EslRl~~~~~~-~~r~~~-------------------------- 154 (197)
++|+|+++|+++++++ ..++++++++|||++|||+|++|++|+++. ++|.+.
T Consensus 320 ~v~~kl~~Ei~~~~~~~~~~~~~~l~~l~yl~avi~E~lRl~p~~~~~~~R~~~~d~~~~g~~IP~Gt~v~~~~~~~~rd 399 (499)
T PLN03234 320 EAMKKAQDEVRNVIGDKGYVSEEDIPNLPYLKAVIKESLRLEPVIPILLHRETIADAKIGGYDIPAKTIIQVNAWAVSRD 399 (499)
T ss_pred HHHHHHHHHHHHHhCCCCCCCHHHHhcChHHHHHHHHHhccCCCccccCCcccCCCeeECCEEECCCCEEEEehHhhhCC
Confidence 9999999999999984 568999999999999999999999999998 467765
Q ss_pred ---C-CCCCCccCCCCCCCCccc--CCCCCCccccCCCcccccCCccCC
Q 041343 155 ---Q-EDAEEFSPLRFINGVTKA--ARNPNAMLAFGAGPRACIGQKIEF 197 (197)
Q Consensus 155 ---~-~dp~~F~P~R~~~~~~~~--~~~~~~~~~Fg~G~r~C~G~~lA~ 197 (197)
| +||++||||||+++.... ...+..++|||+|+|.|+|+++|+
T Consensus 400 ~~~~~~~P~~F~PeR~l~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~ 448 (499)
T PLN03234 400 TAAWGDNPNEFIPERFMKEHKGVDFKGQDFELLPFGSGRRMCPAMHLGI 448 (499)
T ss_pred cccccCChhhcCchhhcCCCCCcCcCCCcceEeCCCCCCCCCCChHHHH
Confidence 8 899999999998753321 124678999999999999999984
No 13
>PLN02687 flavonoid 3'-monooxygenase
Probab=99.97 E-value=3.8e-30 Score=215.88 Aligned_cols=95 Identities=28% Similarity=0.384 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHhC-CCCCCHHhhhhchhHHHHhhhcccccccccc-cccccc--------------------------
Q 041343 103 HWQAKLREEVLEYCG-IGIPDADILSNLKLVNMVLLEALRLYSPVIR-LYRQGS-------------------------- 154 (197)
Q Consensus 103 e~~~kl~~Ei~~~~~-~~~~~~~~~~~l~yl~a~i~EslRl~~~~~~-~~r~~~-------------------------- 154 (197)
++|+|+++||+++++ ++.++.++++++||++|||+|++|++|+++. ++|.+.
T Consensus 329 ~~~~kl~~Ei~~~~~~~~~~~~~~l~~lpyl~a~i~EtlRl~p~~~~~~~R~~~~d~~~~g~~ip~Gt~v~~~~~~~h~d 408 (517)
T PLN02687 329 DILKKAQEELDAVVGRDRLVSESDLPQLTYLQAVIKETFRLHPSTPLSLPRMAAEECEINGYHIPKGATLLVNVWAIARD 408 (517)
T ss_pred HHHHHHHHHHHHHcCCCCCCCHHHhhhCHHHHHHHHHHHccCCCccccccccCCCCeeECCEEECCCCEEEEecHHhcCC
Confidence 999999999999988 5678999999999999999999999999997 677766
Q ss_pred ---CCCCCCccCCCCCCCCccc----CCCCCCccccCCCcccccCCccCC
Q 041343 155 ---QEDAEEFSPLRFINGVTKA----ARNPNAMLAFGAGPRACIGQKIEF 197 (197)
Q Consensus 155 ---~~dp~~F~P~R~~~~~~~~----~~~~~~~~~Fg~G~r~C~G~~lA~ 197 (197)
|+||++|+||||++..... ...+..++|||+|+|.|+|++||+
T Consensus 409 ~~~~~dp~~F~PeRfl~~~~~~~~~~~~~~~~~~pFG~G~r~C~G~~~A~ 458 (517)
T PLN02687 409 PEQWPDPLEFRPDRFLPGGEHAGVDVKGSDFELIPFGAGRRICAGLSWGL 458 (517)
T ss_pred cccCCCcccCCchhcCCCCCccccccCCCceeeCCCCCCCCCCCChHHHH
Confidence 9999999999998753211 124568999999999999999984
No 14
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=99.97 E-value=5.9e-30 Score=213.74 Aligned_cols=95 Identities=24% Similarity=0.414 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHhCC--CCCCHHhhhhchhHHHHhhhcccccccccccccccc--------------------------
Q 041343 103 HWQAKLREEVLEYCGI--GIPDADILSNLKLVNMVLLEALRLYSPVIRLYRQGS-------------------------- 154 (197)
Q Consensus 103 e~~~kl~~Ei~~~~~~--~~~~~~~~~~l~yl~a~i~EslRl~~~~~~~~r~~~-------------------------- 154 (197)
++|+|+++|++++.+. ..++.+++++|||++|||+|+||++|+++...|.+.
T Consensus 325 ~v~~kl~~Ei~~~~~~~~~~~t~~~l~~LpYl~avi~EtLRl~p~v~~~~r~~~~d~~~~~G~~Ip~Gt~V~~~~~~~~r 404 (502)
T PLN02426 325 EVASAIREEADRVMGPNQEAASFEEMKEMHYLHAALYESMRLFPPVQFDSKFAAEDDVLPDGTFVAKGTRVTYHPYAMGR 404 (502)
T ss_pred HHHHHHHHHHHHhhCCCCCCCCHHHHhcChHHHHHHHHHHhCCCCCCCcceeeccCCCcCCCcEECCCCEEEEchHHhcC
Confidence 9999999999999873 368999999999999999999999999987656543
Q ss_pred ----C-CCCCCccCCCCCCCCcccCCCCCCccccCCCcccccCCccCC
Q 041343 155 ----Q-EDAEEFSPLRFINGVTKAARNPNAMLAFGAGPRACIGQKIEF 197 (197)
Q Consensus 155 ----~-~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~lA~ 197 (197)
| +||++|+||||++........+..++|||+|+|.|+|++||+
T Consensus 405 d~~~~G~dp~~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~ 452 (502)
T PLN02426 405 MERIWGPDCLEFKPERWLKNGVFVPENPFKYPVFQAGLRVCLGKEMAL 452 (502)
T ss_pred CccccCcChhhcCccccCCCCCcCCCCCcccCCCCCCCCCCccHHHHH
Confidence 7 999999999998742211234568999999999999999984
No 15
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=99.96 E-value=9.6e-30 Score=212.81 Aligned_cols=95 Identities=31% Similarity=0.391 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHhC-CCCCCHHhhhhchhHHHHhhhccccccccccc-ccccc--------------------------
Q 041343 103 HWQAKLREEVLEYCG-IGIPDADILSNLKLVNMVLLEALRLYSPVIRL-YRQGS-------------------------- 154 (197)
Q Consensus 103 e~~~kl~~Ei~~~~~-~~~~~~~~~~~l~yl~a~i~EslRl~~~~~~~-~r~~~-------------------------- 154 (197)
++|+|+++||+++++ +..+++++++++||++|||+|++|++|+++.. +|.+.
T Consensus 325 ~vq~kl~~Ei~~v~~~~~~~~~~~l~~lpyl~avi~EtlRl~p~~~~~~~r~~~~d~~i~g~~IP~Gt~V~~~~~~~~rd 404 (503)
T PLN02394 325 EIQKKLRDELDTVLGPGNQVTEPDTHKLPYLQAVVKETLRLHMAIPLLVPHMNLEDAKLGGYDIPAESKILVNAWWLANN 404 (503)
T ss_pred HHHHHHHHHHHHHhCCCCCCCHhHHhhCHHHHHHHHHHHhcCCCcccccceecCCCcccCCEEeCCCCEEEEchHHHhCC
Confidence 999999999999998 45689999999999999999999999999984 56654
Q ss_pred ---CCCCCCccCCCCCCCCcc--cCCCCCCccccCCCcccccCCccCC
Q 041343 155 ---QEDAEEFSPLRFINGVTK--AARNPNAMLAFGAGPRACIGQKIEF 197 (197)
Q Consensus 155 ---~~dp~~F~P~R~~~~~~~--~~~~~~~~~~Fg~G~r~C~G~~lA~ 197 (197)
|+||++|+||||++..+. ....+..++|||+|+|+|+|++||+
T Consensus 405 ~~~~~~P~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~ 452 (503)
T PLN02394 405 PELWKNPEEFRPERFLEEEAKVEANGNDFRFLPFGVGRRSCPGIILAL 452 (503)
T ss_pred cccCCCccccCccccCCCCCcccccCCCCceeCCCCCCCCCCCHHHHH
Confidence 999999999999875332 1224578999999999999999985
No 16
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=99.96 E-value=5.1e-30 Score=214.13 Aligned_cols=90 Identities=30% Similarity=0.516 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHhhhhchhHHHHhhhcccccccccccccccc----------------------------
Q 041343 103 HWQAKLREEVLEYCGIGIPDADILSNLKLVNMVLLEALRLYSPVIRLYRQGS---------------------------- 154 (197)
Q Consensus 103 e~~~kl~~Ei~~~~~~~~~~~~~~~~l~yl~a~i~EslRl~~~~~~~~r~~~---------------------------- 154 (197)
++|+|+++||++++ +.+++++|||++|||+||||++|++|.+.|.+.
T Consensus 333 evq~kl~~Ei~~v~-----~~~dl~~L~Yl~avi~EtLRl~P~vp~~~r~~~~d~~~~~G~~IpkGt~v~i~~~~ihrd~ 407 (500)
T PLN02169 333 QVMAKIRHEINTKF-----DNEDLEKLVYLHAALSESMRLYPPLPFNHKAPAKPDVLPSGHKVDAESKIVICIYALGRMR 407 (500)
T ss_pred HHHHHHHHHHHhhC-----CHHHHhcCHHHHHHHHHHHhcCCCCCcCceecCCCCCccCCEEECCCCEEEEcHHHhhCCc
Confidence 99999999999874 679999999999999999999999998776544
Q ss_pred --C-CCCCCccCCCCCCCCcccC-CCCCCccccCCCcccccCCccCC
Q 041343 155 --Q-EDAEEFSPLRFINGVTKAA-RNPNAMLAFGAGPRACIGQKIEF 197 (197)
Q Consensus 155 --~-~dp~~F~P~R~~~~~~~~~-~~~~~~~~Fg~G~r~C~G~~lA~ 197 (197)
| +||++|+||||++.+.... ..+..|+|||+|+|+|+|++||+
T Consensus 408 ~~w~~dP~~F~PeRfl~~~~~~~~~~~~~~lPFG~GpR~CiG~~~A~ 454 (500)
T PLN02169 408 SVWGEDALDFKPERWISDNGGLRHEPSYKFMAFNSGPRTCLGKHLAL 454 (500)
T ss_pred cccCCChhhcCccccCCCCCCccCCCCccccCCCCCCCCCcCHHHHH
Confidence 8 8999999999997533321 23688999999999999999985
No 17
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=99.96 E-value=8e-30 Score=213.89 Aligned_cols=95 Identities=32% Similarity=0.452 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHhCC---------------------CCCCHHhhhhchhHHHHhhhcccccccccccccccc-------
Q 041343 103 HWQAKLREEVLEYCGI---------------------GIPDADILSNLKLVNMVLLEALRLYSPVIRLYRQGS------- 154 (197)
Q Consensus 103 e~~~kl~~Ei~~~~~~---------------------~~~~~~~~~~l~yl~a~i~EslRl~~~~~~~~r~~~------- 154 (197)
++|+|+++||+++.++ +.+++++++++||++|||+|+||++|+++...|.+.
T Consensus 324 ~vq~kl~~Ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lpyl~Avi~EtLRl~p~~p~~~r~~~~d~~~~~ 403 (516)
T PLN03195 324 HVAEKLYSELKALEKERAKEEDPEDSQSFNQRVTQFAGLLTYDSLGKLQYLHAVITETLRLYPAVPQDPKGILEDDVLPD 403 (516)
T ss_pred HHHHHHHHHHHHhhhcccccccccccchhhhhcccccCCCCHHHHhcCHHHHHHHHHHhhcCCCCcchhhhhccCcCcCC
Confidence 9999999999987642 357899999999999999999999999998655433
Q ss_pred -----------------------C-CCCCCccCCCCCCCCcccCCCCCCccccCCCcccccCCccCC
Q 041343 155 -----------------------Q-EDAEEFSPLRFINGVTKAARNPNAMLAFGAGPRACIGQKIEF 197 (197)
Q Consensus 155 -----------------------~-~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~lA~ 197 (197)
| +||++|+||||+++.......+..++|||+|+|.|+|++||+
T Consensus 404 G~~IpkGt~V~~~~~~~h~dp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFG~G~R~CiG~~lA~ 470 (516)
T PLN03195 404 GTKVKAGGMVTYVPYSMGRMEYNWGPDAASFKPERWIKDGVFQNASPFKFTAFQAGPRICLGKDSAY 470 (516)
T ss_pred CcEECCCCEEEEehHhhccChhhhccChhhcCCcccCCCCCcCCCCCceEeccCCCCCcCcCHHHHH
Confidence 8 999999999998642212234567999999999999999985
No 18
>PLN02966 cytochrome P450 83A1
Probab=99.96 E-value=1.4e-29 Score=211.85 Aligned_cols=95 Identities=24% Similarity=0.359 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHhCC---CCCCHHhhhhchhHHHHhhhcccccccccc-cccccc------------------------
Q 041343 103 HWQAKLREEVLEYCGI---GIPDADILSNLKLVNMVLLEALRLYSPVIR-LYRQGS------------------------ 154 (197)
Q Consensus 103 e~~~kl~~Ei~~~~~~---~~~~~~~~~~l~yl~a~i~EslRl~~~~~~-~~r~~~------------------------ 154 (197)
++|+|+++||+++++. ..+++++++++||++|||+|++|++|+++. ++|.+.
T Consensus 321 ~~q~kl~~Ei~~v~~~~~~~~~~~~dl~~lpyl~avi~E~LRl~p~v~~~~~R~~~~d~~l~g~~IP~Gt~V~~~~~~~~ 400 (502)
T PLN02966 321 QVLKKAQAEVREYMKEKGSTFVTEDDVKNLPYFRALVKETLRIEPVIPLLIPRACIQDTKIAGYDIPAGTTVNVNAWAVS 400 (502)
T ss_pred HHHHHHHHHHHHHhcccCCCcCCHhhccCCcHHHHHHHHHhccCCCcccccCcccCCCeeEccEEECCCCEEEEeccccc
Confidence 9999999999999873 357999999999999999999999999998 577765
Q ss_pred -----C-CCCCCccCCCCCCCCcccCCCCCCccccCCCcccccCCccCC
Q 041343 155 -----Q-EDAEEFSPLRFINGVTKAARNPNAMLAFGAGPRACIGQKIEF 197 (197)
Q Consensus 155 -----~-~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~lA~ 197 (197)
| +||++|+||||+++.......+..++|||+|+|.|+|++||+
T Consensus 401 rdp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~ 449 (502)
T PLN02966 401 RDEKEWGPNPDEFRPERFLEKEVDFKGTDYEFIPFGSGRRMCPGMRLGA 449 (502)
T ss_pred CCcccccCChhhCChhhhcCCCCCcCCCcCCccCCCCCCCCCCCHHHHH
Confidence 7 999999999998753321234678999999999999999984
No 19
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=99.96 E-value=6.7e-30 Score=209.38 Aligned_cols=95 Identities=39% Similarity=0.577 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHhCC-CCCCHHhhhhchhHHHHhhhccccccccc-ccccccc--------------------------
Q 041343 103 HWQAKLREEVLEYCGI-GIPDADILSNLKLVNMVLLEALRLYSPVI-RLYRQGS-------------------------- 154 (197)
Q Consensus 103 e~~~kl~~Ei~~~~~~-~~~~~~~~~~l~yl~a~i~EslRl~~~~~-~~~r~~~-------------------------- 154 (197)
++|+|+++||+++.++ ..++.++++++||++|||+|++|++|+++ .++|.+.
T Consensus 294 ~~~~kl~~Ei~~~~~~~~~~~~~~l~~l~yl~a~i~EtlRl~p~~~~~~~R~~~~d~~l~g~~ip~gt~v~~~~~~~~~d 373 (463)
T PF00067_consen 294 EVQEKLREEIDSVLGDGREITFEDLSKLPYLDAVIKETLRLYPPVPFSLPRVATEDVTLGGYFIPKGTIVIVSIYALHRD 373 (463)
T ss_dssp HHHHHHHHHHHHHTTTSSSHHHHHHGTGHHHHHHHHHHHHHSTSSSTEEEEEESSSEEETTEEEETTSEEEEEHHHHTTS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999973 46899999999999999999999999999 6888877
Q ss_pred ---CCCCCCccCCCCCCCCcccCCCCCCccccCCCcccccCCccCC
Q 041343 155 ---QEDAEEFSPLRFINGVTKAARNPNAMLAFGAGPRACIGQKIEF 197 (197)
Q Consensus 155 ---~~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~lA~ 197 (197)
|+||++|+||||++...........++|||.|+|.|+|++||+
T Consensus 374 ~~~~~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~ 419 (463)
T PF00067_consen 374 PEYFPDPDEFDPERFLDERGISNRPSFAFLPFGAGPRMCPGRNLAM 419 (463)
T ss_dssp TTTSSSTTS--TTGGBTTTSTBCSSSTTSSTTESSTTS-TTHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccchHHHHHH
Confidence 9999999999999885533456789999999999999999984
No 20
>PLN03112 cytochrome P450 family protein; Provisional
Probab=99.96 E-value=3.2e-29 Score=210.14 Aligned_cols=95 Identities=23% Similarity=0.300 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHhC-CCCCCHHhhhhchhHHHHhhhcccccccccc-cccccc--------------------------
Q 041343 103 HWQAKLREEVLEYCG-IGIPDADILSNLKLVNMVLLEALRLYSPVIR-LYRQGS-------------------------- 154 (197)
Q Consensus 103 e~~~kl~~Ei~~~~~-~~~~~~~~~~~l~yl~a~i~EslRl~~~~~~-~~r~~~-------------------------- 154 (197)
++|+|+++||+++.+ ++.++.++++++||++|||+|++|++|+++. ++|.+.
T Consensus 328 ~vq~kl~~Ei~~~~~~~~~~t~~~l~~L~yl~avi~EtlRl~p~~~~~~~R~~~~d~~i~g~~IPkGt~v~~~~~~~h~d 407 (514)
T PLN03112 328 RVLRKIQEELDSVVGRNRMVQESDLVHLNYLRCVVRETFRMHPAGPFLIPHESLRATTINGYYIPAKTRVFINTHGLGRN 407 (514)
T ss_pred HHHHHHHHHHHHhcCCCCcCChhhhccCcHHHHHHHHHhccCCCcccccccccCCCeeEcCEEeCCCCEEEEehHHhhCC
Confidence 999999999999998 4568999999999999999999999999997 577766
Q ss_pred ---CCCCCCccCCCCCCCCcc--c--CCCCCCccccCCCcccccCCccCC
Q 041343 155 ---QEDAEEFSPLRFINGVTK--A--ARNPNAMLAFGAGPRACIGQKIEF 197 (197)
Q Consensus 155 ---~~dp~~F~P~R~~~~~~~--~--~~~~~~~~~Fg~G~r~C~G~~lA~ 197 (197)
|+||++|+||||.+.... . ...+..++|||+|+|.|+|++||+
T Consensus 408 ~~~~~dP~~F~PeRf~~~~~~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~ 457 (514)
T PLN03112 408 TKIWDDVEEFRPERHWPAEGSRVEISHGPDFKILPFSAGKRKCPGAPLGV 457 (514)
T ss_pred cccCCChhhcCCcccCCCCCCccccccCCCcceeCCCCCCCCCCcHHHHH
Confidence 999999999998654211 1 123468999999999999999985
No 21
>PLN02655 ent-kaurene oxidase
Probab=99.96 E-value=5.7e-29 Score=206.38 Aligned_cols=94 Identities=36% Similarity=0.507 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHhhhhchhHHHHhhhccccccccccc-ccccc---------------------------
Q 041343 103 HWQAKLREEVLEYCGIGIPDADILSNLKLVNMVLLEALRLYSPVIRL-YRQGS--------------------------- 154 (197)
Q Consensus 103 e~~~kl~~Ei~~~~~~~~~~~~~~~~l~yl~a~i~EslRl~~~~~~~-~r~~~--------------------------- 154 (197)
++|+|+++||++++++..++.++++++||++||++|+||++|+++.. +|.+.
T Consensus 294 ~~~~~l~~Ei~~~~~~~~~~~~~l~~l~yl~a~i~EtlRl~p~~~~~~~r~~~~d~~~~g~~ip~gt~v~~~~~~~~~d~ 373 (466)
T PLN02655 294 DKQERLYREIREVCGDERVTEEDLPNLPYLNAVFHETLRKYSPVPLLPPRFVHEDTTLGGYDIPAGTQIAINIYGCNMDK 373 (466)
T ss_pred HHHHHHHHHHHHHhCCCCCCHHHHhcChHHHHHHHHHhccCCCcCCCCCcccCCCcccCCEEECCCCEEEecHHHhcCCc
Confidence 99999999999999866699999999999999999999999999884 67765
Q ss_pred --CCCCCCccCCCCCCCCcccCCCCCCccccCCCcccccCCccCC
Q 041343 155 --QEDAEEFSPLRFINGVTKAARNPNAMLAFGAGPRACIGQKIEF 197 (197)
Q Consensus 155 --~~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~lA~ 197 (197)
|+||++|+||||++.... ......++|||+|+|.|||++||+
T Consensus 374 ~~~~~p~~F~PeR~~~~~~~-~~~~~~~~~Fg~G~r~C~G~~~A~ 417 (466)
T PLN02655 374 KRWENPEEWDPERFLGEKYE-SADMYKTMAFGAGKRVCAGSLQAM 417 (466)
T ss_pred ccCCChhccCccccCCCCcc-cCCcccccCCCCCCCCCCcHHHHH
Confidence 999999999999975322 223578999999999999999984
No 22
>PLN02936 epsilon-ring hydroxylase
Probab=99.96 E-value=1.6e-28 Score=204.80 Aligned_cols=95 Identities=27% Similarity=0.378 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCHHhhhhchhHHHHhhhccccccccccccccc-c---------------------------
Q 041343 103 HWQAKLREEVLEYCGIGIPDADILSNLKLVNMVLLEALRLYSPVIRLYRQG-S--------------------------- 154 (197)
Q Consensus 103 e~~~kl~~Ei~~~~~~~~~~~~~~~~l~yl~a~i~EslRl~~~~~~~~r~~-~--------------------------- 154 (197)
++|+|+++||++++++..++++++++|||++|||+|++|++|+++...|.+ .
T Consensus 310 ~~~~kl~~Ei~~~~~~~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~r~~~~~~~~~g~~Ip~Gt~v~~~~~~~~rd~ 389 (489)
T PLN02936 310 EALRKAQEELDRVLQGRPPTYEDIKELKYLTRCINESMRLYPHPPVLIRRAQVEDVLPGGYKVNAGQDIMISVYNIHRSP 389 (489)
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHhhCHHHHHHHHHhhhcCCCcccccceeccCccccCCeEECCCCEEEecHHhccCCh
Confidence 999999999999998666899999999999999999999999988743333 2
Q ss_pred --CCCCCCccCCCCCCCCcc--cCCCCCCccccCCCcccccCCccCC
Q 041343 155 --QEDAEEFSPLRFINGVTK--AARNPNAMLAFGAGPRACIGQKIEF 197 (197)
Q Consensus 155 --~~dp~~F~P~R~~~~~~~--~~~~~~~~~~Fg~G~r~C~G~~lA~ 197 (197)
|+||++|+||||+++... ....+..++|||.|+|.|+|++||+
T Consensus 390 ~~~~dP~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~C~G~~la~ 436 (489)
T PLN02936 390 EVWERAEEFVPERFDLDGPVPNETNTDFRYIPFSGGPRKCVGDQFAL 436 (489)
T ss_pred hhCCCccccCccccCCCCCCccccCCCcceeCCCCCCCCCCCHHHHH
Confidence 999999999999864321 1223468999999999999999984
No 23
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=99.95 E-value=4.2e-28 Score=200.51 Aligned_cols=91 Identities=21% Similarity=0.257 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHhC-----CCCCCHHhhhhchhHHHHhhhcccccccccccccccc-----------------------
Q 041343 103 HWQAKLREEVLEYCG-----IGIPDADILSNLKLVNMVLLEALRLYSPVIRLYRQGS----------------------- 154 (197)
Q Consensus 103 e~~~kl~~Ei~~~~~-----~~~~~~~~~~~l~yl~a~i~EslRl~~~~~~~~r~~~----------------------- 154 (197)
++|+++++|++++.+ +..++.+++.++||++|||+|++|++|+++.++|.+.
T Consensus 283 ~v~~kl~~Ei~~~~~~~~~~~~~~~~~~~~~lpyl~avi~E~lRl~p~~~~~~R~~~~d~~l~g~~IPkG~~V~~~~~~~ 362 (452)
T PLN03141 283 VALQQLTEENMKLKRLKADTGEPLYWTDYMSLPFTQNVITETLRMGNIINGVMRKAMKDVEIKGYLIPKGWCVLAYFRSV 362 (452)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCCHHHHhccHHHHHHHHHHHhccCCcCCcceeecCCeeECCEEECCCCEEEEehHhc
Confidence 899999999998753 3457899999999999999999999999988777776
Q ss_pred ------CCCCCCccCCCCCCCCcccCCCCCCccccCCCcccccCCccCC
Q 041343 155 ------QEDAEEFSPLRFINGVTKAARNPNAMLAFGAGPRACIGQKIEF 197 (197)
Q Consensus 155 ------~~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~lA~ 197 (197)
|+||++|+||||++.+ ..+..++|||+|+|.|+|++||+
T Consensus 363 ~~d~~~~~dP~~F~PeRfl~~~----~~~~~~~pFG~G~R~C~G~~lA~ 407 (452)
T PLN03141 363 HLDEENYDNPYQFNPWRWQEKD----MNNSSFTPFGGGQRLCPGLDLAR 407 (452)
T ss_pred cCCchhcCCccccCcccccCCC----CCCCCCCCCCCCCCCCChHHHHH
Confidence 9999999999998752 23678999999999999999984
No 24
>PLN02774 brassinosteroid-6-oxidase
Probab=99.95 E-value=6.4e-28 Score=199.95 Aligned_cols=92 Identities=24% Similarity=0.392 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHhCC----CCCCHHhhhhchhHHHHhhhcccccccccccccccc------------------------
Q 041343 103 HWQAKLREEVLEYCGI----GIPDADILSNLKLVNMVLLEALRLYSPVIRLYRQGS------------------------ 154 (197)
Q Consensus 103 e~~~kl~~Ei~~~~~~----~~~~~~~~~~l~yl~a~i~EslRl~~~~~~~~r~~~------------------------ 154 (197)
++|+|+++|++++++. ..+++++++++||++|+|+|+||++|+++.+.|.+.
T Consensus 296 ~~q~kl~~Ei~~~~~~~~~~~~~~~~~l~~lpyl~a~ikE~lRl~P~v~~~~R~~~~d~~l~g~~IpkGt~v~~~~~~~~ 375 (463)
T PLN02774 296 KALQELRKEHLAIRERKRPEDPIDWNDYKSMRFTRAVIFETSRLATIVNGVLRKTTQDMELNGYVIPKGWRIYVYTREIN 375 (463)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCCHHHHhcCcHHHHHHHHHHhcCCCCCCcccccCCCeeECCEEECCCCEEEEehHHhc
Confidence 9999999999999862 457899999999999999999999999988777765
Q ss_pred -----CCCCCCccCCCCCCCCcccCCCCCCccccCCCcccccCCccCC
Q 041343 155 -----QEDAEEFSPLRFINGVTKAARNPNAMLAFGAGPRACIGQKIEF 197 (197)
Q Consensus 155 -----~~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~lA~ 197 (197)
|+||++|+||||++.... ....++|||+|+|.|+|++||+
T Consensus 376 rdp~~~~dP~~F~PeRfl~~~~~---~~~~~lpFG~G~r~C~G~~~A~ 420 (463)
T PLN02774 376 YDPFLYPDPMTFNPWRWLDKSLE---SHNYFFLFGGGTRLCPGKELGI 420 (463)
T ss_pred CCcccCCChhccCchhcCCCCcC---CCccccCcCCCCCcCCcHHHHH
Confidence 999999999999865321 1246999999999999999984
No 25
>PLN03018 homomethionine N-hydroxylase
Probab=99.95 E-value=7.5e-28 Score=202.36 Aligned_cols=95 Identities=19% Similarity=0.284 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHhC-CCCCCHHhhhhchhHHHHhhhccccccccccc-ccccc--------------------------
Q 041343 103 HWQAKLREEVLEYCG-IGIPDADILSNLKLVNMVLLEALRLYSPVIRL-YRQGS-------------------------- 154 (197)
Q Consensus 103 e~~~kl~~Ei~~~~~-~~~~~~~~~~~l~yl~a~i~EslRl~~~~~~~-~r~~~-------------------------- 154 (197)
++|+|+++||+++++ +..++.+++.++||++|||+|++|++|+++.. +|.+.
T Consensus 346 ~~q~kl~~Ei~~v~~~~~~~~~~~~~~lpyl~a~i~EtlRl~p~~~~~~~r~~~~d~~i~G~~IpkGt~V~~~~~~~~~d 425 (534)
T PLN03018 346 EILRKALKELDEVVGKDRLVQESDIPNLNYLKACCRETFRIHPSAHYVPPHVARQDTTLGGYFIPKGSHIHVCRPGLGRN 425 (534)
T ss_pred HHHHHHHHHHHHHhCCCCCCCHHHhcCCHHHHHHHHHHHhcCCCccccCCcccCCCeeECCEEECCCCEEEEChHHhcCC
Confidence 999999999999998 46789999999999999999999999999985 56655
Q ss_pred ---CCCCCCccCCCCCCCCccc-----CCCCCCccccCCCcccccCCccCC
Q 041343 155 ---QEDAEEFSPLRFINGVTKA-----ARNPNAMLAFGAGPRACIGQKIEF 197 (197)
Q Consensus 155 ---~~dp~~F~P~R~~~~~~~~-----~~~~~~~~~Fg~G~r~C~G~~lA~ 197 (197)
|+||++|+||||++.+... ...+..++|||+|+|.|+|++||+
T Consensus 426 p~~~~~p~~F~PeRfl~~~~~~~~~~~~~~~~~~lpFG~G~R~C~G~~lA~ 476 (534)
T PLN03018 426 PKIWKDPLVYEPERHLQGDGITKEVTLVETEMRFVSFSTGRRGCVGVKVGT 476 (534)
T ss_pred cccCCCccccCCccCCCCCCccccccccCCCCCccCCCCCCCCCccHHHHH
Confidence 9999999999998653211 124578999999999999999984
No 26
>PLN02196 abscisic acid 8'-hydroxylase
Probab=99.95 E-value=1e-27 Score=198.74 Aligned_cols=90 Identities=23% Similarity=0.349 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHhC----CCCCCHHhhhhchhHHHHhhhcccccccccccccccc------------------------
Q 041343 103 HWQAKLREEVLEYCG----IGIPDADILSNLKLVNMVLLEALRLYSPVIRLYRQGS------------------------ 154 (197)
Q Consensus 103 e~~~kl~~Ei~~~~~----~~~~~~~~~~~l~yl~a~i~EslRl~~~~~~~~r~~~------------------------ 154 (197)
++|+|+++|++++++ +..++.+++++++|++|+|+|++|++|+++...|.+.
T Consensus 296 ~vq~kl~~Ei~~~~~~~~~~~~~~~~~~~~l~yl~avi~EtlRl~p~~~~~~R~~~~d~~i~g~~IpkGt~v~~~~~~~~ 375 (463)
T PLN02196 296 SVLEAVTEEQMAIRKDKEEGESLTWEDTKKMPLTSRVIQETLRVASILSFTFREAVEDVEYEGYLIPKGWKVLPLFRNIH 375 (463)
T ss_pred HHHHHHHHHHHHHhcccccCCCCCHHHHhcChHHHHHHHHHHhcCCCccccceeeccccccCCEEeCCCCEEEeeHHHhc
Confidence 999999999999886 2458999999999999999999999999988767655
Q ss_pred -----CCCCCCccCCCCCCCCcccCCCCCCccccCCCcccccCCccCC
Q 041343 155 -----QEDAEEFSPLRFINGVTKAARNPNAMLAFGAGPRACIGQKIEF 197 (197)
Q Consensus 155 -----~~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~lA~ 197 (197)
|+||++|+||||++. ..+..++|||+|+|.|+|++||+
T Consensus 376 rd~~~~~dP~~F~PeRfl~~-----~~~~~~lpFG~G~r~C~G~~~A~ 418 (463)
T PLN02196 376 HSADIFSDPGKFDPSRFEVA-----PKPNTFMPFGNGTHSCPGNELAK 418 (463)
T ss_pred CCchhcCCcCccChhhhcCC-----CCCCcccCcCCCCCCCchHHHHH
Confidence 999999999999863 23578999999999999999984
No 27
>PLN02302 ent-kaurenoic acid oxidase
Probab=99.95 E-value=3.4e-27 Score=196.76 Aligned_cols=91 Identities=23% Similarity=0.356 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHhCCC-----CCCHHhhhhchhHHHHhhhcccccccccccccccc-----------------------
Q 041343 103 HWQAKLREEVLEYCGIG-----IPDADILSNLKLVNMVLLEALRLYSPVIRLYRQGS----------------------- 154 (197)
Q Consensus 103 e~~~kl~~Ei~~~~~~~-----~~~~~~~~~l~yl~a~i~EslRl~~~~~~~~r~~~----------------------- 154 (197)
++|+|+++|++++.++. .+++++++++||++|+|+|++|++|+++...|.+.
T Consensus 319 ~~~~kl~~E~~~v~~~~~~~~~~~~~~~l~~lpyl~a~i~E~lRl~p~~~~~~R~~~~d~~~~g~~Ip~Gt~v~~~~~~~ 398 (490)
T PLN02302 319 EVLQKAKAEQEEIAKKRPPGQKGLTLKDVRKMEYLSQVIDETLRLINISLTVFREAKTDVEVNGYTIPKGWKVLAWFRQV 398 (490)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCHHHHhcChHHHHHHHHHHHhCCCcccchhcccCCEeECCEEECCCCEEEeeHHHh
Confidence 99999999999998631 37899999999999999999999999998777766
Q ss_pred ------CCCCCCccCCCCCCCCcccCCCCCCccccCCCcccccCCccCC
Q 041343 155 ------QEDAEEFSPLRFINGVTKAARNPNAMLAFGAGPRACIGQKIEF 197 (197)
Q Consensus 155 ------~~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~lA~ 197 (197)
|+||++|+||||++.. ..+..++|||+|+|.|+|++||+
T Consensus 399 ~rd~~~~~dP~~F~PeR~~~~~----~~~~~~~pFG~G~r~C~G~~lA~ 443 (490)
T PLN02302 399 HMDPEVYPNPKEFDPSRWDNYT----PKAGTFLPFGLGSRLCPGNDLAK 443 (490)
T ss_pred cCCcccCCCccccChhhcCCCC----CCCCCccCCCCCCcCCCcHHHHH
Confidence 9999999999998652 24578999999999999999984
No 28
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=99.94 E-value=4.9e-26 Score=188.95 Aligned_cols=94 Identities=23% Similarity=0.338 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHhC----CCCCCHHhhhhchhHHHHhhhcccccccccccccccc------------------------
Q 041343 103 HWQAKLREEVLEYCG----IGIPDADILSNLKLVNMVLLEALRLYSPVIRLYRQGS------------------------ 154 (197)
Q Consensus 103 e~~~kl~~Ei~~~~~----~~~~~~~~~~~l~yl~a~i~EslRl~~~~~~~~r~~~------------------------ 154 (197)
++|+++++|++++.+ ...++++++.++||++|+++|++|++|+++.+.|.+.
T Consensus 299 ~~~~~l~~E~~~~~~~~~~~~~~~~~~l~~lpyl~a~i~EtLRl~p~~~~~~R~~~~d~~~~G~~ip~Gt~v~~~~~~~~ 378 (472)
T PLN02987 299 LALAQLKEEHEKIRAMKSDSYSLEWSDYKSMPFTQCVVNETLRVANIIGGIFRRAMTDIEVKGYTIPKGWKVFASFRAVH 378 (472)
T ss_pred HHHHHHHHHHHHHHcccCCCCCCCHHHHhcChHHHHHHHHHHHccCCcCCccccCCCCeeECCEEECCCCEEEEehHHhh
Confidence 999999999999875 2457899999999999999999999999987777665
Q ss_pred -----CCCCCCccCCCCCCCCcccCCCCCCccccCCCcccccCCccCC
Q 041343 155 -----QEDAEEFSPLRFINGVTKAARNPNAMLAFGAGPRACIGQKIEF 197 (197)
Q Consensus 155 -----~~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~lA~ 197 (197)
|+||++|+||||++.... ......++|||+|+|.|+|++||+
T Consensus 379 ~d~~~~~~p~~F~PeRfl~~~~~-~~~~~~~l~FG~G~r~C~G~~lA~ 425 (472)
T PLN02987 379 LDHEYFKDARTFNPWRWQSNSGT-TVPSNVFTPFGGGPRLCPGYELAR 425 (472)
T ss_pred CCcccCCCccccCcccCCCCCCC-CCCCcceECCCCCCcCCCcHHHHH
Confidence 999999999999875322 224568999999999999999984
No 29
>PLN00168 Cytochrome P450; Provisional
Probab=99.93 E-value=3.2e-26 Score=192.24 Aligned_cols=110 Identities=26% Similarity=0.403 Sum_probs=89.9
Q ss_pred ccCChhhHhhHhhHH--------HHHHHHHHHHHHHhCC--CCCCHHhhhhchhHHHHhhhcccccccccc-cccccc--
Q 041343 88 FIPGSQHLYNGLALL--------HWQAKLREEVLEYCGI--GIPDADILSNLKLVNMVLLEALRLYSPVIR-LYRQGS-- 154 (197)
Q Consensus 88 ~~p~~~~~~~~l~ll--------e~~~kl~~Ei~~~~~~--~~~~~~~~~~l~yl~a~i~EslRl~~~~~~-~~r~~~-- 154 (197)
++++.+++..++++. ++|+|+++||++++++ ..++.+++++|||++|||+|++|++|+++. ++|.+.
T Consensus 315 ~~AG~dTTa~~l~~~l~~L~~~P~~q~kl~~Ei~~v~~~~~~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~R~~~~d 394 (519)
T PLN00168 315 LNAGTDTTSTALQWIMAELVKNPSIQSKLHDEIKAKTGDDQEEVSEEDVHKMPYLKAVVLEGLRKHPPAHFVLPHKAAED 394 (519)
T ss_pred HHhcchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCCCCCCCCHHHhhCChHHHHHHHHHhhcCCCCcccCCccCCCC
Confidence 445666555555533 9999999999999973 568999999999999999999999999987 577775
Q ss_pred ---------------------------CCCCCCccCCCCCCCCcc-----cCCCCCCccccCCCcccccCCccCC
Q 041343 155 ---------------------------QEDAEEFSPLRFINGVTK-----AARNPNAMLAFGAGPRACIGQKIEF 197 (197)
Q Consensus 155 ---------------------------~~dp~~F~P~R~~~~~~~-----~~~~~~~~~~Fg~G~r~C~G~~lA~ 197 (197)
|+||++|+||||++.... ....+..++|||+|+|.|+|++||+
T Consensus 395 ~~~~g~~IpkGt~v~~~~~~~~~d~~~~~~p~~F~PeRf~~~~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~ 469 (519)
T PLN00168 395 MEVGGYLIPKGATVNFMVAEMGRDEREWERPMEFVPERFLAGGDGEGVDVTGSREIRMMPFGVGRRICAGLGIAM 469 (519)
T ss_pred ccCCCEEECCCCEEEEChHHHhcCccccCCccccCcccCCCCCCCccccccccCCcceeCCCCCCCCCCcHHHHH
Confidence 999999999999874221 1123568999999999999999984
No 30
>PLN02648 allene oxide synthase
Probab=99.90 E-value=1.4e-23 Score=174.11 Aligned_cols=95 Identities=29% Similarity=0.361 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHhC--CCCCCHHhhhhchhHHHHhhhcccccccccccccccc--------------------------
Q 041343 103 HWQAKLREEVLEYCG--IGIPDADILSNLKLVNMVLLEALRLYSPVIRLYRQGS-------------------------- 154 (197)
Q Consensus 103 e~~~kl~~Ei~~~~~--~~~~~~~~~~~l~yl~a~i~EslRl~~~~~~~~r~~~-------------------------- 154 (197)
++|+++++||+.+++ +..++++++++++|++++|+|++|++|+++...|.+.
T Consensus 305 ~v~~klr~Ei~~~~~~~~~~~t~~~l~~l~yl~avi~EtLRl~p~v~~~~r~a~~d~~l~~~~~g~~IpkG~~V~~~~~~ 384 (480)
T PLN02648 305 ELQARLAEEVRSAVKAGGGGVTFAALEKMPLVKSVVYEALRIEPPVPFQYGRAREDFVIESHDAAFEIKKGEMLFGYQPL 384 (480)
T ss_pred HHHHHHHHHHHHHhccCCCCCCHHHHhcCHHHHHHHHHHHhhcCCcccccceecCCEEEecCCceEEECCCCEEEEChHH
Confidence 399999999999986 3568999999999999999999999999987555432
Q ss_pred -------CCCCCCccCCCCCCCCcccCC------CCCCccccCCCcccccCCccCC
Q 041343 155 -------QEDAEEFSPLRFINGVTKAAR------NPNAMLAFGAGPRACIGQKIEF 197 (197)
Q Consensus 155 -------~~dp~~F~P~R~~~~~~~~~~------~~~~~~~Fg~G~r~C~G~~lA~ 197 (197)
|+||++|+|+||++....... ....+.+||+|+|.|+|++||+
T Consensus 385 ~hrdp~~~~dP~~F~PeRf~~~~~~~~~~~~~f~~g~~~~~~G~G~R~C~G~~~A~ 440 (480)
T PLN02648 385 VTRDPKVFDRPEEFVPDRFMGEEGEKLLKYVFWSNGRETESPTVGNKQCAGKDFVV 440 (480)
T ss_pred HhCCcccCCCcceeCCCCCCCCCccccccccccCCCcccCCCCCCCccCccHHHHH
Confidence 999999999999864221110 0112233477889999999984
No 31
>KOG0684 consensus Cytochrome P450 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.90 E-value=2.7e-24 Score=170.77 Aligned_cols=102 Identities=30% Similarity=0.448 Sum_probs=86.7
Q ss_pred hhHhhHH----HHHHHHHHHHHHHhCC--CCCCHHhhhhchhHHHHhhhcccccccccccccccc---------------
Q 041343 96 YNGLALL----HWQAKLREEVLEYCGI--GIPDADILSNLKLVNMVLLEALRLYSPVIRLYRQGS--------------- 154 (197)
Q Consensus 96 ~~~l~ll----e~~~kl~~Ei~~~~~~--~~~~~~~~~~l~yl~a~i~EslRl~~~~~~~~r~~~--------------- 154 (197)
.+++.+| |+++.+++|+.+++|. ..++++.++++|.++.||+||+|++||.+.+.|.+.
T Consensus 294 fW~l~yLl~~Pe~~~a~~eE~k~vlG~~~~~l~~d~L~~lplL~~~IkEtLRL~~p~~~~~R~v~~D~tv~~~~~~Y~Ip 373 (486)
T KOG0684|consen 294 FWTLAYLLRHPEAQKAVREEQKRVLGEKKEKLTYDQLKDLPLLDSCIKETLRLHPPAHSLMRKVHEDLTVPGSDGEYVIP 373 (486)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHhhccCCCCCHHHHhcchHHHHHHHHHHhcCCchhhHHHhhccceeeccCCcceecC
Confidence 3445555 9999999999999993 348999999999999999999999999988777765
Q ss_pred ------------------CCCCCCccCCCCCCCCcccC----CCCCCccccCCCcccccCCccCC
Q 041343 155 ------------------QEDAEEFSPLRFINGVTKAA----RNPNAMLAFGAGPRACIGQKIEF 197 (197)
Q Consensus 155 ------------------~~dp~~F~P~R~~~~~~~~~----~~~~~~~~Fg~G~r~C~G~~lA~ 197 (197)
|+||++|+|+||+++++... .-...++|||+|++.|||+.||+
T Consensus 374 ~G~~valsP~~~hr~peif~dp~~Fk~dRf~~~~~~~~k~g~kl~yy~mpfGaGr~~CpGr~FA~ 438 (486)
T KOG0684|consen 374 KGDIVALSPFLLHRDPEIFPDPEDFKPDRFLKDNGESKKNGEKLDYYYMPFGAGRHRCPGRSFAY 438 (486)
T ss_pred CCCEEEeccccccCCccccCChhhCChhhccCCCcccccccccccccccccCCCcCCCCchHHHH
Confidence 99999999999997755431 23456799999999999999995
No 32
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.88 E-value=7.4e-23 Score=167.21 Aligned_cols=58 Identities=43% Similarity=0.736 Sum_probs=53.2
Q ss_pred hhHHHHhhhcccccccccccccccc-----------------------------CCCCCCccCCCCCCCCcccCCCCCCc
Q 041343 130 KLVNMVLLEALRLYSPVIRLYRQGS-----------------------------QEDAEEFSPLRFINGVTKAARNPNAM 180 (197)
Q Consensus 130 ~yl~a~i~EslRl~~~~~~~~r~~~-----------------------------~~dp~~F~P~R~~~~~~~~~~~~~~~ 180 (197)
+|+.++++|++|++||++...|.+. |+||++|||+||. ..+
T Consensus 280 ~~~~~~v~E~LR~~ppv~~~~R~~~~d~~igg~~Ip~G~~V~~~~~~anrDp~~f~~P~~F~p~R~~----------~~~ 349 (411)
T COG2124 280 PLLEAVVEETLRLYPPVPLARRVATEDVELGGYRIPAGTVVLLSIGAANRDPEVFPDPDEFDPERFN----------NAH 349 (411)
T ss_pred HHHHHHHHHHHHhCCchhccceeccCCEeeCCEEeCCCCEEEecHhhhcCChhhCCChhhcCCCCCC----------CCC
Confidence 7899999999999999999777666 9999999999994 779
Q ss_pred cccCCCcccccCCccCC
Q 041343 181 LAFGAGPRACIGQKIEF 197 (197)
Q Consensus 181 ~~Fg~G~r~C~G~~lA~ 197 (197)
+|||+|+|.|+|.+||+
T Consensus 350 l~FG~G~H~ClG~~lA~ 366 (411)
T COG2124 350 LPFGGGPHRCLGAALAR 366 (411)
T ss_pred cCCCCCCccccCHHHHH
Confidence 99999999999999984
No 33
>PLN00168 Cytochrome P450; Provisional
Probab=94.30 E-value=0.3 Score=41.54 Aligned_cols=38 Identities=13% Similarity=0.318 Sum_probs=31.5
Q ss_pred CCcchHHHHhh-hhccccchhhhh-------------------------------------HHHHHHHHcCCCccc
Q 041343 28 GGQTHWASHGR-IIISAFAIDKLK-------------------------------------ADIIAHTAFGSSFAE 65 (197)
Q Consensus 28 ~~g~~wk~~Rk-~~~~~f~~~~~~-------------------------------------~~~i~~~~fG~~~~~ 65 (197)
.+|+.|+++|| ++.++|+.++++ .++|+.++||.++++
T Consensus 126 ~~G~~Wk~~Rr~~~~~~fs~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~v~~~~~~~~~~~~ii~~~~fG~~~~~ 201 (519)
T PLN00168 126 SYGPVWRLLRRNLVAETLHPSRVRLFAPARAWVRRVLVDKLRREAEDAAAPRVVETFQYAMFCLLVLMCFGERLDE 201 (519)
T ss_pred CCCHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHcCCCcCh
Confidence 45999999986 788999987776 677899999998753
No 34
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=69.63 E-value=2 Score=25.16 Aligned_cols=8 Identities=25% Similarity=0.600 Sum_probs=6.6
Q ss_pred cCCCCCCC
Q 041343 162 SPLRFING 169 (197)
Q Consensus 162 ~P~R~~~~ 169 (197)
|||||+.-
T Consensus 44 DPERWLP~ 51 (59)
T PF08492_consen 44 DPERWLPK 51 (59)
T ss_pred CccccCch
Confidence 89999864
No 35
>KOG3506 consensus 40S ribosomal protein S29 [Translation, ribosomal structure and biogenesis]
Probab=52.90 E-value=6.4 Score=22.46 Aligned_cols=10 Identities=50% Similarity=1.162 Sum_probs=8.6
Q ss_pred ccCCCccccc
Q 041343 182 AFGAGPRACI 191 (197)
Q Consensus 182 ~Fg~G~r~C~ 191 (197)
+||.|.|.|-
T Consensus 13 kfg~GsrsC~ 22 (56)
T KOG3506|consen 13 KFGQGSRSCR 22 (56)
T ss_pred ccCCCCccee
Confidence 6999999984
No 36
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=34.72 E-value=15 Score=26.51 Aligned_cols=35 Identities=29% Similarity=0.462 Sum_probs=23.2
Q ss_pred CCccCCCCCCCCcccC-CCCCCccccCCCcccccCCc
Q 041343 159 EEFSPLRFINGVTKAA-RNPNAMLAFGAGPRACIGQK 194 (197)
Q Consensus 159 ~~F~P~R~~~~~~~~~-~~~~~~~~Fg~G~r~C~G~~ 194 (197)
-+|+|++|=.- -.+. .+.-..+-|..|+-.|-|..
T Consensus 35 aeYnP~qFpGl-v~Rl~ePk~a~LIF~SGK~VcTGaK 70 (185)
T COG2101 35 AEYNPEQFPGL-VYRLEEPKTAALIFRSGKVVCTGAK 70 (185)
T ss_pred CccCHhHCCee-EEEecCCcceEEEEecCcEEEeccC
Confidence 36888888321 0111 14467899999999999864
No 37
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=29.72 E-value=77 Score=22.85 Aligned_cols=49 Identities=8% Similarity=0.110 Sum_probs=35.5
Q ss_pred cchhhhhccCceEEeecCCCcccccCCCcc-hHHHHhhhhccccchhhhh--HHHHHHHHcCCCc
Q 041343 2 SYLHLVMRDIPVRVRSRAQDLHFRPGGGQT-HWASHGRIIISAFAIDKLK--ADIIAHTAFGSSF 63 (197)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~wk~~Rk~~~~~f~~~~~~--~~~i~~~~fG~~~ 63 (197)
+|+|.++|.+ .+..++. +...+=+.+.|..+...++ ++.+.++.|=++.
T Consensus 23 ~W~~~~ir~l-------------~~l~~~~~d~~~iak~l~p~is~~ev~~sL~~L~~~gli~k~ 74 (171)
T PF14394_consen 23 SWYHPAIREL-------------LPLMPFAPDPEWIAKRLRPKISAEEVRDSLEFLEKLGLIKKD 74 (171)
T ss_pred hhHHHHHHHH-------------hhcCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEC
Confidence 6999999987 3333344 7777778888888888877 7777777665543
No 38
>PF07886 BA14K: BA14K-like protein; InterPro: IPR012413 The sequences found in this family are similar to the BA14K proteins expressed by Brucella abortus (Q44701 from SWISSPROT) and by Brucella suis (Q8FVU0 from SWISSPROT). BA14K was found to be strongly immunoreactive; it induces both humoral and cellular responses in hosts throughout the infective process [].
Probab=29.66 E-value=40 Score=16.88 Aligned_cols=16 Identities=19% Similarity=0.360 Sum_probs=13.4
Q ss_pred CCCCccccCCCccccc
Q 041343 176 NPNAMLAFGAGPRACI 191 (197)
Q Consensus 176 ~~~~~~~Fg~G~r~C~ 191 (197)
....++|+.+.+|.|.
T Consensus 16 ~~~Ty~~~~G~r~~C~ 31 (31)
T PF07886_consen 16 RDNTYQPYDGPRRFCR 31 (31)
T ss_pred CCCcEeCCCCccccCc
Confidence 4678999998899994
No 39
>cd04518 TBP_archaea archaeal TATA box binding protein (TBP): TBPs are transcription factors present in archaea and eukaryotes, that recognize promoters and initiate transcription. TBP has been shown to be an essential component of three different transcription initiation complexes: SL1, TFIID and TFIIIB, directing transcription by RNA polymerases I, II and III, respectively. TBP binds directly to the TATA box promoter element, where it nucleates polymerase assembly, thus defining the transcription start site. TBP's binding in the minor groove induces a dramatic DNA bending while its own structure barely changes. The conserved core domain of TBP, which binds to the TATA box, has a bipartite structure, with intramolecular symmetry generating a saddle-shaped structure that sits astride the DNA.
Probab=27.30 E-value=18 Score=26.23 Aligned_cols=34 Identities=26% Similarity=0.396 Sum_probs=23.2
Q ss_pred CCccCCCCCCCCcccC-CCCCCccccCCCcccccCC
Q 041343 159 EEFSPLRFINGVTKAA-RNPNAMLAFGAGPRACIGQ 193 (197)
Q Consensus 159 ~~F~P~R~~~~~~~~~-~~~~~~~~Fg~G~r~C~G~ 193 (197)
-+|+|+||-.- -.+. .+.-..+-|+.|+=.|.|-
T Consensus 29 ~eY~P~~fpgl-i~Rl~~Pk~t~lIF~SGKiv~tGa 63 (174)
T cd04518 29 AEYNPDQFPGL-VYRLEDPKIAALIFRSGKMVCTGA 63 (174)
T ss_pred cEECCCcCcEE-EEEccCCcEEEEEECCCeEEEEcc
Confidence 47999998322 1111 2446788899999999985
No 40
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=24.59 E-value=3e+02 Score=21.54 Aligned_cols=49 Identities=10% Similarity=0.192 Sum_probs=29.7
Q ss_pred cchhhhhccCceEEeecCCCcccccCCCcchHHHHhhhhccccchhhhh--HHHHHHHHcCCC
Q 041343 2 SYLHLVMRDIPVRVRSRAQDLHFRPGGGQTHWASHGRIIISAFAIDKLK--ADIIAHTAFGSS 62 (197)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~wk~~Rk~~~~~f~~~~~~--~~~i~~~~fG~~ 62 (197)
+|+|.|+|.+-- ..+....+.| +=+.+.|..+...++ ++.+.++.|=++
T Consensus 121 ~W~~~virel~~----------~~~~~~~~~~--ia~~l~p~is~~ev~~sL~~L~~~glikk 171 (271)
T TIGR02147 121 HWYNSVIRELLG----------VMPFADDPEE--LAKRCFPKISAEQVKESLDLLERLGLIKK 171 (271)
T ss_pred HHHHHHHHHHhh----------cCCCCCCHHH--HHHHhCCCCCHHHHHHHHHHHHHCCCeeE
Confidence 689999988721 1222212344 566677777776665 666666666554
No 41
>PF15054 DUF4535: Domain of unknown function (DUF4535)
Probab=23.22 E-value=20 Score=19.78 Aligned_cols=16 Identities=31% Similarity=0.648 Sum_probs=11.6
Q ss_pred ccccCCCcccccCCccCC
Q 041343 180 MLAFGAGPRACIGQKIEF 197 (197)
Q Consensus 180 ~~~Fg~G~r~C~G~~lA~ 197 (197)
.++|+.| .|.|..+|+
T Consensus 3 ~fsF~~G--~~~GiY~AQ 18 (46)
T PF15054_consen 3 LFSFGAG--TYTGIYVAQ 18 (46)
T ss_pred eEEEeec--cEEEEEeee
Confidence 4567777 788877774
No 42
>PRK00394 transcription factor; Reviewed
Probab=21.31 E-value=31 Score=25.12 Aligned_cols=35 Identities=29% Similarity=0.459 Sum_probs=22.9
Q ss_pred CCccCCCCCCCCcccCCCCCCccccCCCcccccCC
Q 041343 159 EEFSPLRFINGVTKAARNPNAMLAFGAGPRACIGQ 193 (197)
Q Consensus 159 ~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~ 193 (197)
-+|+|+||-.----...+.-..+-|+.|+=.|.|-
T Consensus 28 ~eYePe~fpgli~Rl~~Pk~t~lIf~sGKiv~tGa 62 (179)
T PRK00394 28 AEYNPEQFPGLVYRLEDPKIAALIFRSGKVVCTGA 62 (179)
T ss_pred ceeCcccCceEEEEecCCceEEEEEcCCcEEEEcc
Confidence 47899998322001112446788899999999983
No 43
>PF15203 TMEM95: TMEM95 family
Probab=21.03 E-value=63 Score=21.91 Aligned_cols=37 Identities=16% Similarity=0.287 Sum_probs=26.9
Q ss_pred hhhhccCceEEeecCCCcccccCCCcchHHHHhhhhccccchhhhh
Q 041343 5 HLVMRDIPVRVRSRAQDLHFRPGGGQTHWASHGRIIISAFAIDKLK 50 (197)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~wk~~Rk~~~~~f~~~~~~ 50 (197)
|+|.|-+.++ -+++.. ..-|..++|.-.|.++..++-
T Consensus 53 HRVLRVmEiK-------~s~S~l--P~Yw~WL~ktklP~YtREalc 89 (152)
T PF15203_consen 53 HRVLRVMEIK-------GSFSSL--PLYWQWLQKTKLPQYTREALC 89 (152)
T ss_pred hhheeeeeec-------cccccC--cHHHHHHHhcccchhhhhhcC
Confidence 8888877554 223444 578999999999999877654
No 44
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.23 E-value=46 Score=29.02 Aligned_cols=8 Identities=25% Similarity=0.605 Sum_probs=6.3
Q ss_pred cCCCCCCC
Q 041343 162 SPLRFING 169 (197)
Q Consensus 162 ~P~R~~~~ 169 (197)
|||||++-
T Consensus 582 DPERWLP~ 589 (652)
T KOG2376|consen 582 DPERWLPR 589 (652)
T ss_pred Chhhcccc
Confidence 68999864
Done!