BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>041344
TRRNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARA
WVSTLHAAQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLR
NALGTMTNRITDGPMDDLSIMKETLRVKDEELQNLARDLRARDSTIRDIADKLSETAEAA
EAAASAAHTMDEQRRIACAEIERINKESTKQLETCVLKVNFSQLFCGLLHNPIYTL

High Scoring Gene Products

Symbol, full name Information P value
SWAP70 protein from Arabidopsis thaliana 3.1e-76

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  041344
        (236 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2052831 - symbol:SWAP70 species:3702 "Arabidop...   768  3.1e-76   1


>TAIR|locus:2052831 [details] [associations]
            symbol:SWAP70 species:3702 "Arabidopsis thaliana"
            [GO:0005543 "phospholipid binding" evidence=IEA] [GO:0005737
            "cytoplasm" evidence=ISM] [GO:0007165 "signal transduction"
            evidence=ISS] [GO:0035091 "phosphatidylinositol binding"
            evidence=ISS] [GO:0009505 "plant-type cell wall" evidence=IDA]
            Pfam:PF00169 InterPro:IPR001849 PROSITE:PS50003 SMART:SM00233
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005543
            Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0009505 UniGene:At.58604
            EMBL:AY070724 EMBL:AY143965 IPI:IPI00547804 RefSeq:NP_850155.1
            UniGene:At.71016 UniGene:At.71415 ProteinModelPortal:Q8VYJ6
            SMR:Q8VYJ6 IntAct:Q8VYJ6 PRIDE:Q8VYJ6 EnsemblPlants:AT2G30880.1
            GeneID:817638 KEGG:ath:AT2G30880 TAIR:At2g30880
            HOGENOM:HOG000030854 InParanoid:Q8VYJ6 OMA:TPQKKDY PhylomeDB:Q8VYJ6
            ProtClustDB:CLSN2679936 Genevestigator:Q8VYJ6 Uniprot:Q8VYJ6
        Length = 504

 Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
 Identities = 147/219 (67%), Positives = 167/219 (76%)

Query:     1 TRRNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARA 60
             TRRNEPT+KGTI FDENSTI+ISPVNF GLPKY+GCC YIGTPQKKDYFLCAETPGAA+A
Sbjct:    66 TRRNEPTIKGTILFDENSTISISPVNFQGLPKYNGCCIYIGTPQKKDYFLCAETPGAAKA 125

Query:    61 WVSTLHAAQLVLKAHKEAVNSLSGNGSAKLGXXXXXXXXXXXXXQECSKEIEAAMQISLR 120
             WV+TLHA QLVLKAHKEAV SLSG+GSA LG              ECS+EI+AAMQISLR
Sbjct:   126 WVTTLHATQLVLKAHKEAVESLSGSGSATLGTVATVVAAANSTALECSREIQAAMQISLR 185

Query:   121 NALGTMTNRITDGPMDDLSIMKETLRVKDEELQNLARDLRARDSTIRDIADKLXXXXXXX 180
             NAL    N+  DGP+DDL+IMKETLRVKDEEL NLAR+LR+RDS I++IADKL       
Sbjct:   186 NALKITPNKPIDGPLDDLTIMKETLRVKDEELHNLARELRSRDSMIKEIADKLSETAEAA 245

Query:   181 XXXXXXXHTMDEQRRIACAEIERINKESTKQLETCVLKV 219
                    HTMDEQR+I C E ER+  +S +Q E   LK+
Sbjct:   246 VAAASAAHTMDEQRKIVCVEFERLTTDSQRQQEATKLKL 284


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.132   0.384    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      236       209   0.00079  112 3  11 22  0.36    33
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  166 KB (2098 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.50u 0.14s 16.64t   Elapsed:  00:00:01
  Total cpu time:  16.50u 0.14s 16.64t   Elapsed:  00:00:01
  Start:  Fri May 10 08:35:10 2013   End:  Fri May 10 08:35:11 2013

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