BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041344
(236 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P15800|LAMB2_RAT Laminin subunit beta-2 OS=Rattus norvegicus GN=Lamb2 PE=2 SV=1
Length = 1801
Score = 37.7 bits (86), Expect = 0.062, Method: Composition-based stats.
Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 3/89 (3%)
Query: 85 NGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLRNALGTMTNRITDGPMDDLSIMKET 144
N KLG V +VAA N++A +K +EA LR+ +G T R+T + + E
Sbjct: 1236 NLQGKLGMVQAIVAARNTSAASTAKLVEATE--GLRHEIGKTTERLTQLEAELTDVQDEN 1293
Query: 145 LRVKDEELQNLARDLRARDSTIRDIADKL 173
+ L L RD A + T+R + L
Sbjct: 1294 FNA-NHALSGLERDGLALNLTLRQLDQHL 1321
>sp|Q5U312|RAI14_RAT Ankycorbin OS=Rattus norvegicus GN=Rai14 PE=2 SV=2
Length = 978
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 20/133 (15%)
Query: 82 LSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLRNALGTMTNRITDGPMDDLSIM 141
+S NGS ++ + S +E KE+ + + + LG +++ DG S +
Sbjct: 473 ISENGS----DLSQKLKDTQSKYEEAMKEV---LSVQKQMKLGLLSHESADGD----SRL 521
Query: 142 KETLRVKDEELQNLARDL-RARDSTIRDIA------DKLSETAEAAEAAASAAHTMDEQR 194
+E +RV DE++ L +DL RA + + RD A KL E E AEA ++ +E R
Sbjct: 522 RE-VRVTDEDVDALKQDLQRALEESKRDKARVQELETKLVEK-EKAEATKPSSEVCEEMR 579
Query: 195 RIACAEIERINKE 207
C+ IE +NKE
Sbjct: 580 NSYCSVIENMNKE 592
>sp|Q61292|LAMB2_MOUSE Laminin subunit beta-2 OS=Mus musculus GN=Lamb2 PE=2 SV=2
Length = 1799
Score = 36.6 bits (83), Expect = 0.17, Method: Composition-based stats.
Identities = 26/89 (29%), Positives = 43/89 (48%), Gaps = 3/89 (3%)
Query: 85 NGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLRNALGTMTNRITDGPMDDLSIMKET 144
N KLG V +++A N++A +K +EA LR+ +G T R+T + ++ E
Sbjct: 1234 NMQGKLGMVQAIMSARNASAASTAKLVEATE--GLRHEIGKTTERLTQLEAELTAVQDEN 1291
Query: 145 LRVKDEELQNLARDLRARDSTIRDIADKL 173
+ L L RD A + T+R + L
Sbjct: 1292 FNA-NHALSGLERDGLALNLTLRQLDQHL 1319
>sp|Q8BZ05|ARAP2_MOUSE Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing
protein 2 OS=Mus musculus GN=Arap2 PE=1 SV=2
Length = 1703
Score = 34.3 bits (77), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 9/125 (7%)
Query: 44 QKKDYFLCAETPGAARAWVSTLHAAQ----LVLKAHKEAVNSLSGNGSAKLGTVATVVAA 99
+K + LC ++ A W++++ AQ + A KE S++ N K+G + +
Sbjct: 1505 EKHHWHLCCDSLQAQMEWMASIFIAQHENDIWPPAGKERKRSITKN--PKIGGLPLIPIQ 1562
Query: 100 ANSTAQECSKEIEAAMQISLRNALGTMTN--RITDGPMDD-LSIMKETLRVKDEELQNLA 156
A + K IE A R L + TD + D S++ L KDE+L+N A
Sbjct: 1563 HERNATQARKNIETARAELERLRLSEKHDPRDFTDSSLKDRASLIAHCLEHKDEKLRNRA 1622
Query: 157 RDLRA 161
R R+
Sbjct: 1623 RKHRS 1627
>sp|P55268|LAMB2_HUMAN Laminin subunit beta-2 OS=Homo sapiens GN=LAMB2 PE=1 SV=2
Length = 1798
Score = 33.9 bits (76), Expect = 1.1, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Query: 89 KLGTVATVVAAANSTAQECSKEIEAAMQISLRNALGTMTNRITDGPMDDLSIMKETLRVK 148
KLG V +V A N++A ++ +EA + LR +G T +T D + E
Sbjct: 1237 KLGIVQGIVGARNTSAASTAQLVEATEE--LRREIGEATEHLTQLEADLTDVQDENFNA- 1293
Query: 149 DEELQNLARDLRARDSTIRDIADKL 173
+ L L RD A + T+R + L
Sbjct: 1294 NHALSGLERDRLALNLTLRQLDQHL 1318
>sp|Q9C5X3|KEULE_ARATH SNARE-interacting protein KEULE OS=Arabidopsis thaliana GN=KEU PE=1
SV=2
Length = 666
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 20/155 (12%)
Query: 28 HGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA--AQLVLKAHKEAVNSLSGN 85
H +P G G P+KKD L P W+ HA A + H + N LS N
Sbjct: 291 HVIPSKSG-----GQPEKKDVLLEEHDP----IWLELRHAHIADASERLHDKMTNFLSKN 341
Query: 86 GSAKLGTVATVVAAANSTAQECSKEIEAAMQISLRNALGTMTNRITDGPMDDLSIMKETL 145
+A+L A + ++ K ++A Q S + ++ I ++DL I ++ L
Sbjct: 342 KAAQLQGKRD---GAELSTRDLQKMVQALPQYSEQIDKLSLHVEIARK-LNDL-IREQGL 396
Query: 146 RVKDEELQNLARDLRARDSTIRDIADKLSETAEAA 180
R EL L +DL D+ ++D+ LS EA+
Sbjct: 397 R----ELGQLEQDLVFGDAGMKDVIKYLSTQEEAS 427
>sp|Q9EP71|RAI14_MOUSE Ankycorbin OS=Mus musculus GN=Rai14 PE=1 SV=1
Length = 979
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 21/133 (15%)
Query: 82 LSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLRNALGTMTNRITDGPMDDLSIM 141
+S NGS ++ + S +E KE+ + + + LG ++ DG S +
Sbjct: 475 ISENGS----DLSQKLKETQSKYEEAMKEV---LSVQKQMKLGLLSQESADG----YSHL 523
Query: 142 KETLRVKDEELQNLARDLR------ARDST-IRDIADKLSETAEAAEAAASAAHTMDEQR 194
+E DE++ L +DL+ AR+ +R++ KL+E E AEA A +E R
Sbjct: 524 REA--PADEDIDTLKQDLQKAVEESARNKERVRELETKLAEK-EQAEATKPPAEACEELR 580
Query: 195 RIACAEIERINKE 207
C+ IE +NKE
Sbjct: 581 SSYCSVIENMNKE 593
>sp|Q32LP7|SKAP2_BOVIN Src kinase-associated phosphoprotein 2 OS=Bos taurus GN=SKAP2 PE=2
SV=1
Length = 358
Score = 32.3 bits (72), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 36 CCFYIGTPQKKDYFLCAETPGAARAWVSTLH 66
CCF I P K+ Y A +P A WV L+
Sbjct: 185 CCFEISAPDKRIYQFTAASPKDAEEWVQQLN 215
>sp|O75563|SKAP2_HUMAN Src kinase-associated phosphoprotein 2 OS=Homo sapiens GN=SKAP2
PE=1 SV=1
Length = 359
Score = 32.0 bits (71), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 36 CCFYIGTPQKKDYFLCAETPGAARAWVSTL 65
CCF I P K+ Y A +P A WV L
Sbjct: 185 CCFEISAPDKRIYQFTAASPKDAEEWVQQL 214
>sp|Q5RDS2|SKAP2_PONAB Src kinase-associated phosphoprotein 2 OS=Pongo abelii GN=SKAP2
PE=2 SV=2
Length = 359
Score = 32.0 bits (71), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 36 CCFYIGTPQKKDYFLCAETPGAARAWVSTL 65
CCF I P K+ Y A +P A WV L
Sbjct: 185 CCFEISAPDKRIYQFTAASPKDAEEWVQQL 214
>sp|Q5U597|SKA2B_XENLA Src kinase-associated phosphoprotein 2-B OS=Xenopus laevis
GN=skap2-b PE=2 SV=1
Length = 330
Score = 32.0 bits (71), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 36 CCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKEAV 79
CCF I P K+ Y A +P A W++ + ++ ++ E +
Sbjct: 174 CCFEIFAPDKRVYQFAASSPKEAEEWINAIMNSRGIIATEDEEL 217
>sp|Q9D180|WDR65_MOUSE WD repeat-containing protein 65 OS=Mus musculus GN=Wdr65 PE=2 SV=3
Length = 1249
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 49/105 (46%), Gaps = 27/105 (25%)
Query: 145 LRVKDEELQNLARDLRARDSTIRD----IAD-----------------KLSETAEAAEAA 183
+R ++++Q L R+++ RD TI+D I D K+ E + E
Sbjct: 930 IRSLEKDIQGLKREIQERDETIQDKEKRIYDLKKKNQELEKFKFVLDYKIKELKKQIEPR 989
Query: 184 ASAAHTMDEQRRIACAEIERINKESTKQLETCVLKVNFSQLFCGL 228
+ M EQ + AE+ER +K++T+ L++N ++L L
Sbjct: 990 ENEIKVMKEQIQEMEAELERFHKQNTQ------LELNITELLQKL 1028
>sp|Q9ES64|USH1C_MOUSE Harmonin OS=Mus musculus GN=Ush1c PE=1 SV=1
Length = 910
Score = 31.6 bits (70), Expect = 4.9, Method: Composition-based stats.
Identities = 38/146 (26%), Positives = 59/146 (40%), Gaps = 18/146 (12%)
Query: 20 IAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKA----- 74
+ IS V GL GC G QK F+ PG+ A V Q+V
Sbjct: 212 VFISLVGSRGL----GCSISSGPIQKPGIFVSHVKPGSLSAEVGLETGDQIVEVNGIDFT 267
Query: 75 ---HKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLRNALGTMTNRIT 131
HKEAVN L S++ T++ V A + +E A Q L+ M R+
Sbjct: 268 NLDHKEAVNVLK---SSRSLTISIVAGAGRELFMTDRERLEEARQRELQRQELLMQKRLA 324
Query: 132 DGPMDDLSIMKETLRVKDEELQNLAR 157
M+ I++E ++ + + +A+
Sbjct: 325 ---MESNKILQEQQEMERQRRKEIAQ 347
>sp|Q6PG29|SKAP2_DANRE Src kinase-associated phosphoprotein 2 OS=Danio rerio GN=skap2 PE=2
SV=1
Length = 341
Score = 31.6 bits (70), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 36 CCFYIGTPQKKDYFLCAETPGAARAWVSTL 65
CCF + P K+ Y CA + A+ WV +
Sbjct: 174 CCFEVSAPDKRVYQFCAASEKEAKEWVEHI 203
>sp|Q7VQX1|HIS1_BLOFL ATP phosphoribosyltransferase OS=Blochmannia floridanus GN=hisG
PE=3 SV=1
Length = 299
Score = 31.6 bits (70), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 190 MDEQR-RIACAEIERINKESTKQLETCVLKVNFSQ 223
+D+ R RIA + R++KES K LE C +K+N Q
Sbjct: 2 LDKSRLRIAMQKSGRLSKESQKLLEQCGIKINLQQ 36
>sp|Q65VZ7|ENO_MANSM Enolase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=eno
PE=3 SV=1
Length = 436
Score = 31.2 bits (69), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 11/81 (13%)
Query: 141 MKETLRVKDEELQNLARDLRAR--DSTIRD---IADKLSETAEA----AEAAASAAHTMD 191
++E LR+ E NLA+ L+A+ ++ + D A L AEA EA A + +
Sbjct: 179 LREALRIGAEVFHNLAKVLKAKGLNTAVGDEGGFAPNLGSNAEALACIKEAVEKAGYVLG 238
Query: 192 EQRRIA--CAEIERINKESTK 210
+ +A CA E NKE+ K
Sbjct: 239 KDVTLAMDCASSEFYNKENGK 259
>sp|Q82EU9|CLPB1_STRAW Chaperone protein ClpB 1 OS=Streptomyces avermitilis (strain ATCC
31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 /
MA-4680) GN=clpB1 PE=3 SV=1
Length = 870
Score = 31.2 bits (69), Expect = 6.6, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 135 MDDLSIMKETLRVKDEELQNLARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQR 194
M++L+I KET E L+ L RDL ++ +R + + + ++ +DE R
Sbjct: 426 MEELAIGKETDAASRERLEKLRRDLADKEEELRGLTARWEKEKQSLNRVGELKEKLDELR 485
>sp|O14529|CUX2_HUMAN Homeobox protein cut-like 2 OS=Homo sapiens GN=CUX2 PE=1 SV=4
Length = 1486
Score = 30.8 bits (68), Expect = 7.7, Method: Composition-based stats.
Identities = 38/176 (21%), Positives = 72/176 (40%), Gaps = 29/176 (16%)
Query: 63 STLHAAQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLRNA 122
S L A Q L + + + + + ++G + T + AN A+ +E+E SLR
Sbjct: 212 SALKATQAELLELRRKYDEEAASKADEVGLIMTNLEKANQRAEAAQREVE-----SLREQ 266
Query: 123 LGTMTNRI------TDGPMDDL--------SIMKETLRVKDEELQNLARDLRARDSTIRD 168
L ++ + I GP D ++ L KD E+ L +D++ S+++
Sbjct: 267 LASVNSSIRLACCSPQGPSGDKVNFTLCSGPRLEAALASKDREILRLLKDVQHLQSSLQ- 325
Query: 169 IADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTKQLETCVLKVNFSQL 224
E EA+A+ ++ Q IE++ ++ Q + +K S L
Sbjct: 326 ---------ELEEASANQIADLERQLTAKSEAIEKLEEKLQAQSDYEEIKTELSIL 372
>sp|Q9Y6N9|USH1C_HUMAN Harmonin OS=Homo sapiens GN=USH1C PE=1 SV=3
Length = 552
Score = 30.8 bits (68), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 61/151 (40%), Gaps = 18/151 (11%)
Query: 15 DENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLK- 73
++ + IS V GL GC G QK F+ PG+ A V Q+V
Sbjct: 207 NKEKKVFISLVGSRGL----GCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVN 262
Query: 74 -------AHKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLRNALGTM 126
HKEAVN L S++ T++ V AA + + A Q L+ M
Sbjct: 263 GVDFSNLDHKEAVNVLK---SSRSLTISIVAAAGRELFMTDRERLAEARQRELQRQELLM 319
Query: 127 TNRITDGPMDDLSIMKETLRVKDEELQNLAR 157
R+ M+ I++E ++ + + +A+
Sbjct: 320 QKRLA---MESNKILQEQQEMERQRRKEIAQ 347
>sp|Q7ZVT3|SAS6_DANRE Spindle assembly abnormal protein 6 homolog OS=Danio rerio GN=sass6
PE=1 SV=1
Length = 627
Score = 30.8 bits (68), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 63/130 (48%), Gaps = 14/130 (10%)
Query: 71 VLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKE--IEAAMQISLRNALGTM-- 126
VL+A ++ NS+ GN +K ++ + + S ++E K I +Q L+ LG +
Sbjct: 348 VLEATQQQKNSVEGNAESKQLQISKLESTVKSLSEELIKANGIIKKLQADLKALLGKIKV 407
Query: 127 TNRITDGPMDDLSIMKETLRVKDEELQNLARDLRARDSTIRDIADKLSETAEAAEAAASA 186
N +T P + I++ET ++LQ R+L+ T + ++ K E A+ E +
Sbjct: 408 KNSVT-VPQE--KILQET----SDKLQRQQRELQ---DTQQRLSLKEEEAAKLKEQLEAT 457
Query: 187 AHTMDEQRRI 196
+DE R +
Sbjct: 458 VQKLDESREV 467
>sp|Q82TC8|DEF2_NITEU Peptide deformylase 2 OS=Nitrosomonas europaea (strain ATCC 19718 /
NBRC 14298) GN=def2 PE=3 SV=1
Length = 185
Score = 30.8 bits (68), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%)
Query: 145 LRVKDEELQNLARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERI 204
LR DE L +A ++ + IR + ++ET AA AA +D +RI ++
Sbjct: 24 LRYPDERLHKIATEVPSITREIRTLVSNMAETMYAAPGIGLAATQVDVHQRIIVIDVSET 83
Query: 205 NKE 207
E
Sbjct: 84 RDE 86
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.128 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,826,258
Number of Sequences: 539616
Number of extensions: 2799119
Number of successful extensions: 12423
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 126
Number of HSP's that attempted gapping in prelim test: 12301
Number of HSP's gapped (non-prelim): 254
length of query: 236
length of database: 191,569,459
effective HSP length: 114
effective length of query: 122
effective length of database: 130,053,235
effective search space: 15866494670
effective search space used: 15866494670
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)