Query 041344
Match_columns 236
No_of_seqs 20 out of 22
Neff 2.0
Searched_HMMs 46136
Date Fri Mar 29 06:11:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041344.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041344hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01235 PH_SETbf Set binding f 98.3 2.1E-06 4.6E-11 61.5 7.2 63 3-67 35-99 (101)
2 cd01251 PH_centaurin_alpha Cen 98.0 2.3E-05 4.9E-10 59.1 7.4 63 3-69 34-100 (103)
3 PF00169 PH: PH domain; Inter 97.9 5.5E-05 1.2E-09 51.0 6.9 64 5-69 40-103 (104)
4 cd01250 PH_centaurin Centaurin 97.8 2.6E-05 5.6E-10 54.2 4.5 33 34-67 61-93 (94)
5 cd01233 Unc104 Unc-104 pleckst 97.7 0.0001 2.2E-09 54.8 6.2 61 4-68 37-97 (100)
6 cd01266 PH_Gab Gab (Grb2-assoc 97.7 0.00014 3E-09 54.7 6.6 62 3-66 44-105 (108)
7 cd01260 PH_CNK Connector enhan 97.7 0.00012 2.5E-09 52.9 5.9 59 3-68 38-96 (96)
8 cd01246 PH_oxysterol_bp Oxyste 97.7 0.00013 2.7E-09 50.4 5.8 53 7-68 39-91 (91)
9 cd01265 PH_PARIS-1 PARIS-1 ple 97.7 0.00014 3E-09 54.0 6.2 56 3-67 37-92 (95)
10 cd00821 PH Pleckstrin homology 97.2 0.0012 2.6E-08 42.8 5.8 56 6-67 40-95 (96)
11 cd01236 PH_outspread Outspread 97.2 0.0009 2E-08 52.1 6.1 56 5-66 46-101 (104)
12 cd01238 PH_Tec Tec pleckstrin 97.2 0.0014 3E-08 49.7 6.4 61 6-67 44-105 (106)
13 cd01252 PH_cytohesin Cytohesin 97.1 0.0022 4.8E-08 49.0 6.7 59 4-69 35-113 (125)
14 cd01247 PH_GPBP Goodpasture an 97.0 0.0017 3.7E-08 48.4 5.5 52 6-66 38-89 (91)
15 smart00233 PH Pleckstrin homol 96.8 0.0092 2E-07 38.9 6.8 59 6-68 42-100 (102)
16 cd01254 PH_PLD Phospholipase D 96.3 0.015 3.3E-07 45.2 6.7 62 4-66 52-119 (121)
17 cd01264 PH_melted Melted pleck 96.3 0.016 3.4E-07 45.4 6.4 58 7-67 42-99 (101)
18 cd00900 PH-like Pleckstrin hom 95.5 0.071 1.5E-06 34.8 6.1 32 35-66 64-97 (99)
19 cd01257 PH_IRS Insulin recepto 95.3 0.07 1.5E-06 41.2 6.3 53 6-65 46-98 (101)
20 cd01253 PH_beta_spectrin Beta- 95.2 0.051 1.1E-06 39.8 5.2 32 36-67 72-103 (104)
21 cd01245 PH_RasGAP_CG5898 RAS G 95.2 0.053 1.2E-06 42.1 5.5 58 4-67 39-97 (98)
22 cd01219 PH_FGD FGD (faciogenit 94.6 0.2 4.3E-06 37.6 7.1 34 34-68 65-98 (101)
23 cd01244 PH_RasGAP_CG9209 RAS_G 94.3 0.15 3.3E-06 39.2 6.0 56 6-66 41-96 (98)
24 cd01222 PH_clg Clg (common-sit 91.6 0.58 1.3E-05 36.3 5.8 55 14-68 38-94 (97)
25 PF15413 PH_11: Pleckstrin hom 90.8 0.84 1.8E-05 35.1 5.9 37 31-68 76-112 (112)
26 PF14593 PH_3: PH domain; PDB: 90.1 0.58 1.3E-05 36.9 4.6 49 7-67 49-97 (104)
27 cd01248 PH_PLC Phospholipase C 88.3 0.91 2E-05 34.5 4.4 36 32-67 76-114 (115)
28 cd01220 PH_CDEP Chondrocyte-de 87.0 1.1 2.3E-05 34.4 4.1 32 36-68 65-96 (99)
29 cd01227 PH_Dbs Dbs (DBL's big 83.2 4.7 0.0001 33.2 6.4 56 11-66 56-112 (133)
30 cd01232 PH_TRIO Trio pleckstri 82.3 2.7 5.8E-05 33.5 4.6 49 18-66 57-109 (114)
31 PF10824 DUF2580: Protein of u 81.7 6.9 0.00015 27.4 6.0 30 141-170 1-30 (100)
32 cd01230 PH_EFA6 EFA6 Pleckstri 78.5 3.1 6.7E-05 33.1 3.8 33 37-69 79-111 (117)
33 cd01241 PH_Akt Akt pleckstrin 77.9 5.8 0.00013 29.8 4.9 36 31-67 61-100 (102)
34 cd01261 PH_SOS Son of Sevenles 71.2 7.9 0.00017 30.9 4.4 35 35-69 75-109 (112)
35 PF15409 PH_8: Pleckstrin homo 70.7 16 0.00034 28.4 5.8 54 4-68 35-88 (89)
36 cd01263 PH_anillin Anillin Ple 68.7 8.2 0.00018 31.2 4.0 59 6-66 43-120 (122)
37 PF15410 PH_9: Pleckstrin homo 68.3 9.7 0.00021 29.4 4.2 34 34-67 83-116 (119)
38 PRK11448 hsdR type I restricti 67.9 63 0.0014 34.6 11.2 110 102-212 100-211 (1123)
39 cd07652 F-BAR_Rgd1 The F-BAR ( 66.9 26 0.00057 30.3 7.0 56 149-207 92-147 (234)
40 cd01259 PH_Apbb1ip Apbb1ip (Am 65.9 7.4 0.00016 32.1 3.3 33 36-68 69-107 (114)
41 PF08826 DMPK_coil: DMPK coile 65.6 52 0.0011 24.3 7.4 53 154-210 5-57 (61)
42 PF06013 WXG100: Proteins of 1 65.3 37 0.00081 22.5 8.3 66 144-209 1-68 (86)
43 PRK14161 heat shock protein Gr 65.3 29 0.00063 29.7 6.9 58 159-216 6-64 (178)
44 PRK11637 AmiB activator; Provi 64.8 64 0.0014 29.8 9.4 57 165-221 76-132 (428)
45 KOG0161 Myosin class II heavy 63.7 40 0.00088 38.4 9.2 75 143-217 1069-1150(1930)
46 PF05266 DUF724: Protein of un 63.4 59 0.0013 28.0 8.4 134 38-210 20-170 (190)
47 PRK12806 flagellin; Provisiona 63.0 79 0.0017 30.8 10.1 105 107-214 17-129 (475)
48 PF05659 RPW8: Arabidopsis bro 62.8 23 0.00049 29.3 5.6 31 150-180 16-46 (147)
49 cd01237 Unc112 Unc-112 pleckst 61.4 42 0.0009 27.1 6.7 61 4-68 39-102 (106)
50 cd00176 SPEC Spectrin repeats, 60.7 70 0.0015 24.1 8.0 68 147-214 37-108 (213)
51 cd01218 PH_phafin2 Phafin2 Pl 58.8 18 0.00038 28.4 4.1 32 36-68 66-97 (104)
52 PHA02591 hypothetical protein; 57.4 9.4 0.0002 30.3 2.4 31 149-179 45-75 (83)
53 cd07648 F-BAR_FCHO The F-BAR ( 57.0 95 0.0021 26.6 8.6 15 194-208 132-146 (261)
54 PRK08869 flagellin; Reviewed 56.9 1.4E+02 0.003 27.9 10.2 103 109-214 18-128 (376)
55 PF08317 Spc7: Spc7 kinetochor 56.4 58 0.0013 29.4 7.5 75 131-208 204-285 (325)
56 PRK06819 flagellin; Validated 56.3 1.7E+02 0.0037 27.9 10.8 102 110-214 20-129 (376)
57 KOG0963 Transcription factor/C 53.2 1.5E+02 0.0032 30.8 10.4 111 88-213 235-345 (629)
58 PF04156 IncA: IncA protein; 52.5 1.2E+02 0.0027 24.4 9.8 69 137-205 82-150 (191)
59 PRK12808 flagellin; Provisiona 52.4 1.8E+02 0.004 29.1 10.7 107 105-214 13-127 (476)
60 PF09738 DUF2051: Double stran 51.6 64 0.0014 29.9 7.1 63 165-227 78-140 (302)
61 PF00669 Flagellin_N: Bacteria 50.8 1.1E+02 0.0024 23.3 10.2 90 116-210 23-121 (139)
62 PF10498 IFT57: Intra-flagella 50.2 1.5E+02 0.0032 28.0 9.4 65 167-231 276-356 (359)
63 PRK13588 flagellin B; Provisio 49.8 2E+02 0.0044 28.5 10.6 107 105-214 15-129 (514)
64 PRK08870 flgL flagellar hook-a 49.8 2.1E+02 0.0045 26.3 11.8 90 120-214 29-127 (404)
65 PF07750 GcrA: GcrA cell cycle 49.5 5.9 0.00013 33.1 0.2 32 26-58 109-140 (162)
66 PRK08027 flgL flagellar hook-a 49.2 1.7E+02 0.0037 26.3 9.3 90 120-214 29-127 (317)
67 KOG3647 Predicted coiled-coil 49.0 68 0.0015 30.7 7.0 47 164-210 112-158 (338)
68 cd01106 HTH_TipAL-Mta Helix-Tu 49.0 87 0.0019 23.3 6.4 57 147-209 39-97 (103)
69 cd01262 PH_PDK1 3-Phosphoinosi 47.9 43 0.00092 26.5 4.7 52 6-68 36-87 (89)
70 PF07851 TMPIT: TMPIT-like pro 47.4 1.9E+02 0.0041 27.5 9.6 56 149-204 3-58 (330)
71 smart00502 BBC B-Box C-termina 46.3 1.1E+02 0.0023 22.0 9.7 78 137-217 4-82 (127)
72 PF05529 Bap31: B-cell recepto 46.1 1.2E+02 0.0025 25.1 7.2 21 191-211 153-173 (192)
73 PRK12584 flagellin A; Reviewed 45.8 2.7E+02 0.0058 27.4 10.7 108 104-214 14-129 (510)
74 PRK12807 flagellin; Provisiona 45.8 1.2E+02 0.0026 26.8 7.7 92 120-214 29-127 (287)
75 KOG0994 Extracellular matrix g 45.7 5.2E+02 0.011 29.7 15.1 143 57-211 1410-1585(1758)
76 PRK12802 flagellin; Provisiona 45.4 2.1E+02 0.0046 25.0 10.1 92 120-214 31-129 (282)
77 PRK08026 flagellin; Validated 44.3 2.8E+02 0.0061 27.8 10.7 106 106-214 16-129 (529)
78 PF12814 Mcp5_PH: Meiotic cell 43.4 40 0.00087 26.4 3.9 32 35-67 88-119 (123)
79 cd01109 HTH_YyaN Helix-Turn-He 42.6 70 0.0015 24.2 5.1 53 156-208 50-102 (113)
80 PLN02958 diacylglycerol kinase 41.4 25 0.00054 33.6 3.0 67 33-101 68-143 (481)
81 PRK11637 AmiB activator; Provi 41.3 2.3E+02 0.0049 26.2 9.0 23 151-173 48-70 (428)
82 TIGR03166 alt_F1F0_F1_eps alte 41.0 39 0.00085 27.0 3.6 31 182-212 92-122 (122)
83 PRK13589 flagellin; Provisiona 41.0 3E+02 0.0064 28.3 10.4 102 108-214 18-129 (576)
84 cd01258 PH_syntrophin Syntroph 40.6 42 0.00091 27.0 3.7 29 37-65 76-105 (108)
85 PRK08411 flagellin; Reviewed 40.6 4.2E+02 0.0091 27.2 11.3 104 108-214 18-129 (572)
86 cd01925 cyclophilin_CeCYP16-li 40.0 18 0.00039 29.7 1.6 38 5-42 1-51 (171)
87 COG0840 Tar Methyl-accepting c 39.4 2.6E+02 0.0056 24.3 9.0 62 149-210 165-226 (408)
88 PF00640 PID: Phosphotyrosine 39.3 1.6E+02 0.0034 21.9 6.4 68 7-78 59-140 (140)
89 cd04766 HTH_HspR Helix-Turn-He 39.3 90 0.0019 22.8 5.0 50 146-210 38-90 (91)
90 PRK08073 flgL flagellar hook-a 39.2 2.7E+02 0.0058 24.5 8.7 89 120-213 29-126 (287)
91 cd01242 PH_ROK Rok (Rho- assoc 38.9 1.5E+02 0.0033 24.5 6.8 55 12-66 48-107 (112)
92 PTZ00267 NIMA-related protein 38.3 52 0.0011 30.1 4.4 38 30-68 438-475 (478)
93 PLN03188 kinesin-12 family pro 37.9 2.8E+02 0.006 31.2 10.2 28 197-224 1230-1257(1320)
94 cd01927 cyclophilin_WD40 cyclo 37.8 11 0.00023 30.3 -0.0 40 8-52 5-50 (148)
95 KOG2129 Uncharacterized conser 37.8 49 0.0011 33.4 4.4 29 194-222 255-283 (552)
96 PRK07192 flgL flagellar hook-a 37.8 2.8E+02 0.006 24.2 11.3 91 121-214 30-127 (305)
97 PF11839 DUF3359: Protein of u 37.7 2.2E+02 0.0047 22.9 8.4 44 150-193 31-74 (96)
98 cd04770 HTH_HMRTR Helix-Turn-H 36.7 84 0.0018 23.9 4.7 53 155-207 49-101 (123)
99 smart00787 Spc7 Spc7 kinetocho 34.4 1.3E+02 0.0029 27.7 6.4 81 136-219 204-291 (312)
100 PRK14692 lagellar hook-associa 34.4 5.2E+02 0.011 27.2 11.1 86 122-213 31-126 (749)
101 PF08317 Spc7: Spc7 kinetochor 34.1 1.9E+02 0.0041 26.1 7.2 66 147-212 206-271 (325)
102 PF14197 Cep57_CLD_2: Centroso 33.9 86 0.0019 23.3 4.2 21 192-212 47-67 (69)
103 cd01108 HTH_CueR Helix-Turn-He 33.7 1.5E+02 0.0033 23.1 5.8 52 155-206 49-100 (127)
104 PF04799 Fzo_mitofusin: fzo-li 33.7 72 0.0016 27.8 4.3 51 180-231 108-158 (171)
105 KOG0972 Huntingtin interacting 33.2 2.3E+02 0.0049 27.7 7.9 64 166-229 282-361 (384)
106 cd04768 HTH_BmrR-like Helix-Tu 33.2 1.2E+02 0.0025 22.7 4.9 52 149-206 41-94 (96)
107 KOG3811 Transcription factor A 33.2 98 0.0021 30.7 5.6 57 149-205 289-348 (434)
108 cd07221 Pat_PNPLA3 Patatin-lik 33.1 94 0.002 27.3 5.0 66 14-89 169-249 (252)
109 PF02344 Myc-LZ: Myc leucine z 33.0 90 0.002 21.1 3.8 28 191-221 2-29 (32)
110 COG4942 Membrane-bound metallo 33.0 2.6E+02 0.0056 27.6 8.3 60 149-208 37-96 (420)
111 TIGR02044 CueR Cu(I)-responsiv 32.8 1.3E+02 0.0028 23.4 5.2 53 155-207 49-101 (127)
112 PF05600 DUF773: Protein of un 32.5 3.2E+02 0.0069 26.9 8.9 65 150-215 419-483 (507)
113 COG5293 Predicted ATPase [Gene 32.2 1.6E+02 0.0035 30.2 6.9 54 150-208 342-395 (591)
114 TIGR02837 spore_II_R stage II 32.0 97 0.0021 27.1 4.8 45 158-213 57-101 (168)
115 smart00502 BBC B-Box C-termina 31.2 2E+02 0.0043 20.6 8.7 27 150-176 3-29 (127)
116 KOG1029 Endocytic adaptor prot 30.8 1.4E+02 0.003 32.5 6.5 61 153-213 440-500 (1118)
117 PRK12803 flagellin; Provisiona 30.3 4.6E+02 0.0099 24.5 10.3 92 120-214 29-127 (335)
118 cd04782 HTH_BltR Helix-Turn-He 30.2 1.3E+02 0.0028 22.5 4.7 46 155-205 49-94 (97)
119 cd01924 cyclophilin_TLP40_like 30.2 20 0.00043 29.9 0.4 43 4-51 1-49 (176)
120 COG0856 Orotate phosphoribosyl 29.9 44 0.00096 30.2 2.5 25 150-174 5-29 (203)
121 cd01226 PH_exo84 Exocyst compl 29.7 96 0.0021 24.8 4.1 43 24-68 55-97 (100)
122 PF06056 Terminase_5: Putative 29.5 48 0.001 23.6 2.2 26 151-176 1-26 (58)
123 KOG4677 Golgi integral membran 29.2 1.8E+02 0.0039 29.6 6.7 63 147-209 405-469 (554)
124 PRK12718 flgL flagellar hook-a 29.1 3.3E+02 0.0072 27.0 8.4 94 117-213 26-126 (510)
125 PHA02949 Hypothetical protein; 29.1 26 0.00056 26.7 0.8 21 35-55 35-55 (65)
126 PF06548 Kinesin-related: Kine 28.9 6.3E+02 0.014 25.7 10.7 18 104-121 321-338 (488)
127 PRK03080 phosphoserine aminotr 28.5 31 0.00067 30.8 1.3 29 11-45 166-194 (378)
128 PRK12717 flgL flagellar hook-a 27.7 5.1E+02 0.011 25.4 9.4 89 120-213 29-126 (523)
129 COG5374 Uncharacterized conser 27.6 1.3E+02 0.0027 27.1 4.9 44 137-184 144-187 (192)
130 PF05335 DUF745: Protein of un 27.1 4.3E+02 0.0092 23.1 8.9 53 147-199 64-116 (188)
131 PF10824 DUF2580: Protein of u 26.8 1.9E+02 0.0042 20.0 4.9 36 159-194 59-94 (100)
132 KOG0996 Structural maintenance 26.4 4.5E+02 0.0098 29.6 9.5 31 185-215 850-881 (1293)
133 KOG1917 Membrane-associated he 26.3 2.2E+02 0.0048 31.3 7.1 73 141-213 288-361 (1125)
134 PF02601 Exonuc_VII_L: Exonucl 26.3 4.5E+02 0.0097 23.1 9.6 181 19-227 43-271 (319)
135 KOG0161 Myosin class II heavy 25.7 3.3E+02 0.0071 31.6 8.6 65 159-223 1374-1441(1930)
136 cd04784 HTH_CadR-PbrR Helix-Tu 25.5 1.7E+02 0.0036 22.6 4.7 52 155-206 49-100 (127)
137 PF03962 Mnd1: Mnd1 family; I 25.4 2.4E+02 0.0052 24.0 6.0 57 147-211 66-122 (188)
138 PF02248 Como_SCP: Small coat 25.4 1.3E+02 0.0029 26.7 4.6 39 7-45 64-114 (182)
139 PF13807 GNVR: G-rich domain o 25.2 81 0.0018 22.8 2.8 43 150-192 4-46 (82)
140 PF09726 Macoilin: Transmembra 25.1 3.5E+02 0.0077 27.8 8.1 20 191-210 544-563 (697)
141 PF09738 DUF2051: Double stran 25.1 1.4E+02 0.003 27.7 4.9 63 149-211 153-245 (302)
142 cd07657 F-BAR_Fes_Fer The F-BA 24.9 4.8E+02 0.01 22.9 8.2 58 151-211 95-152 (237)
143 PRK10227 DNA-binding transcrip 24.7 1.9E+02 0.004 23.3 5.0 20 155-174 49-68 (135)
144 PF13870 DUF4201: Domain of un 24.4 3.9E+02 0.0085 21.8 9.6 14 220-233 129-142 (177)
145 cd04783 HTH_MerR1 Helix-Turn-H 24.2 2.2E+02 0.0048 22.0 5.2 50 155-206 49-98 (126)
146 PLN03149 peptidyl-prolyl isome 24.1 29 0.00062 29.2 0.3 36 9-44 32-79 (186)
147 PLN02678 seryl-tRNA synthetase 23.9 1.9E+02 0.0041 28.1 5.7 12 196-207 75-86 (448)
148 TIGR02047 CadR-PbrR Cd(II)/Pb( 23.8 1.8E+02 0.0038 22.9 4.6 52 156-207 50-101 (127)
149 PRK06397 V-type ATP synthase s 23.6 4.4E+02 0.0095 22.0 8.5 60 136-198 10-71 (111)
150 PF10234 Cluap1: Clusterin-ass 23.5 5.9E+02 0.013 23.5 10.7 33 190-222 216-248 (267)
151 cd04787 HTH_HMRTR_unk Helix-Tu 23.5 2.6E+02 0.0055 22.0 5.5 53 154-206 48-100 (133)
152 COG5509 Uncharacterized small 23.4 1.2E+02 0.0026 23.3 3.4 24 188-211 28-51 (65)
153 PRK14126 cell division protein 23.1 3.2E+02 0.007 20.7 5.8 58 149-210 26-83 (85)
154 cd04785 HTH_CadR-PbrR-like Hel 23.0 2.5E+02 0.0053 21.9 5.3 51 156-206 50-100 (126)
155 cd01224 PH_Collybistin Collybi 23.0 2.9E+02 0.0063 22.4 5.8 63 2-66 39-104 (109)
156 PF02895 H-kinase_dim: Signal 23.0 73 0.0016 22.2 2.1 61 143-212 2-65 (68)
157 TIGR03185 DNA_S_dndD DNA sulfu 22.9 6.1E+02 0.013 24.9 9.0 45 165-209 422-466 (650)
158 PF09787 Golgin_A5: Golgin sub 22.8 7E+02 0.015 24.1 9.3 94 130-223 262-368 (511)
159 KOG0169 Phosphoinositide-speci 22.6 80 0.0017 33.1 3.1 40 34-73 86-126 (746)
160 PF13700 DUF4158: Domain of un 22.1 4.2E+02 0.009 21.2 8.6 93 114-206 48-147 (166)
161 KOG0521 Putative GTPase activa 22.1 1.3E+02 0.0028 31.3 4.5 45 33-80 333-377 (785)
162 TIGR00606 rad50 rad50. This fa 22.1 6.1E+02 0.013 27.3 9.4 73 149-223 969-1041(1311)
163 PF12325 TMF_TATA_bd: TATA ele 22.0 4.4E+02 0.0095 21.4 8.8 37 135-171 15-55 (120)
164 PF07704 PSK_trans_fac: Rv0623 21.9 67 0.0014 24.1 1.9 19 145-163 3-21 (82)
165 PRK15048 methyl-accepting chem 21.9 6.6E+02 0.014 23.5 12.9 63 165-227 453-518 (553)
166 PF12329 TMF_DNA_bd: TATA elem 21.7 3.4E+02 0.0074 20.1 8.0 39 141-179 3-44 (74)
167 cd05718 Ig1_PVR_like First imm 21.7 1.6E+02 0.0035 20.4 3.6 37 6-44 46-86 (98)
168 PF13935 Ead_Ea22: Ead/Ea22-li 21.4 4.4E+02 0.0095 21.2 7.6 56 151-206 75-133 (139)
169 PRK13848 conjugal transfer pro 21.1 1.2E+02 0.0025 24.9 3.1 34 195-228 6-39 (98)
170 KOG3828 Uncharacterized conser 20.7 53 0.0011 32.6 1.4 59 159-217 194-252 (457)
171 PRK02277 orotate phosphoribosy 20.7 72 0.0016 26.8 2.0 25 150-174 5-29 (200)
172 PF10018 Med4: Vitamin-D-recep 20.6 1.2E+02 0.0026 25.4 3.3 30 149-178 28-57 (188)
173 cd05775 Ig_SLAM-CD84_like_N N- 20.4 1.4E+02 0.0031 21.6 3.3 45 5-51 47-95 (97)
174 PRK12687 flagellin; Reviewed 20.3 6.6E+02 0.014 22.9 10.6 105 104-214 13-129 (311)
175 COG3415 Transposase and inacti 20.2 1.2E+02 0.0025 25.4 3.1 29 146-174 63-91 (138)
176 KOG1029 Endocytic adaptor prot 20.2 6.4E+02 0.014 27.8 8.9 72 152-223 530-601 (1118)
177 PF10409 PTEN_C2: C2 domain of 20.0 70 0.0015 24.4 1.7 27 19-45 5-34 (134)
178 PRK10884 SH3 domain-containing 20.0 6E+02 0.013 22.2 7.9 56 149-211 117-172 (206)
No 1
>cd01235 PH_SETbf Set binding factor Pleckstrin Homology (PH) domain. Set binding factor Pleckstrin Homology (PH) domain. Set binding factor is a myotubularin-related pseudo-phosphatase consisting of a Denn domain, a Gram domain, an inactive phosphatase domain, a SID motif and a C-terminal PH domain. Its PH domain is predicted to bind lipids based upon its ability to respond to phosphatidylinositol 3-kinase .
Probab=98.35 E-value=2.1e-06 Score=61.52 Aligned_cols=63 Identities=24% Similarity=0.416 Sum_probs=46.2
Q ss_pred CCCCCcceeEEeecCceeeeeccccCCCCCc-c-ceeEEeeeccccceeeeecChhHHHHHHHHHHH
Q 041344 3 RNEPTVKGTITFDENSTIAISPVNFHGLPKY-D-GCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA 67 (236)
Q Consensus 3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kY-D-gCCfyIgtpqkK~yfLcAETp~aaraWvstl~A 67 (236)
.+|..++|+|.++...+|.+..-+. +.|+. + .|||-|-| .++.||||||++..+..|+..|+.
T Consensus 35 ~~~~~~~g~I~L~~~~~v~~~~~~~-~~~~~~~~~~~f~i~t-~~r~~~~~a~s~~e~~~Wi~ai~~ 99 (101)
T cd01235 35 FEDTAEKGCIDLAEVKSVNLAQPGM-GAPKHTSRKGFFDLKT-SKRTYNFLAENINEAQRWKEKIQQ 99 (101)
T ss_pred CCCCccceEEEcceeEEEeecCCCC-CCCCCCCCceEEEEEe-CCceEEEECCCHHHHHHHHHHHHh
Confidence 3567899999999888777643332 33432 2 34555544 578999999999999999999975
No 2
>cd01251 PH_centaurin_alpha Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha Pleckstrin homology (PH) domain. Centaurin alpha is a phophatidlyinositide binding protein consisting of an N-terminal ArfGAP domain and two PH domains. In response to growth factor activation, PI3K phosphorylates phosphatidylinositol 4,5-bisphosphate to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 1 is recruited to the plasma membrane following growth factor stimulation by specific binding of its PH domain to phosphatidylinositol 3,4,5-trisphosphate. Centaurin alpha 2 is constitutively bound to the plasma membrane since it binds phosphatidylinositol 4,5-bisphosphate and phosphatidylinositol 3,4,5-trisphosphate with equal affinity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specifici
Probab=98.04 E-value=2.3e-05 Score=59.07 Aligned_cols=63 Identities=16% Similarity=0.339 Sum_probs=45.8
Q ss_pred CCCCCcceeEEeecCce---eee-eccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344 3 RNEPTVKGTITFDENST---IAI-SPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ 69 (236)
Q Consensus 3 R~e~~~kG~I~fDa~ST---iti-SPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq 69 (236)
.+|..++|.|.++.... |.. .|-...+ --.+||-|.|| .+.|+|+|||+...+.|+..|+.+.
T Consensus 34 ~~d~~~~G~I~L~~~~~~~~v~~~~~~~~~~---~~~~~F~i~t~-~Rty~l~a~s~~e~~~Wi~ai~~v~ 100 (103)
T cd01251 34 PLDAFAKGEVFLGSQEDGYEVREGLPPGTQG---NHWYGVTLVTP-ERKFLFACETEQDRREWIAAFQNVL 100 (103)
T ss_pred CCCcCcCcEEEeeccccceeEeccCCccccc---cccceEEEEeC-CeEEEEECCCHHHHHHHHHHHHHHh
Confidence 45788999999987543 322 1222222 12349999999 7899999999999999999887543
No 3
>PF00169 PH: PH domain; InterPro: IPR001849 The pleckstrin homology (PH) domain is a domain of about 100 residues that occurs in a wide range of proteins involved in intracellular signalling or as constituents of the cytoskeleton [, , , , , , ]. The pleckstrin homology domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids. The 3D structure of several PH domains has been determined []. All known cases have a common structure consisting of two perpendicular anti-parallel beta sheets, followed by a C-terminal amphipathic helix. The loops connecting the beta-strands differ greatly in length, making the PH domain relatively difficult to detect. There are no totally invariant residues within the PH domain. Proteins reported to contain one more PH domains belong to the following families: Pleckstrin, the protein where this domain was first detected, is the major substrate of protein kinase C in platelets. Pleckstrin is one of the rare proteins to contains two PH domains. Ser/Thr protein kinases such as the Akt/Rac family, the beta-adrenergic receptor kinases, the mu isoform of PKC and the trypanosomal NrkA family. Tyrosine protein kinases belonging to the Btk/Itk/Tec subfamily. Insulin Receptor Substrate 1 (IRS-1). Regulators of small G-proteins like guanine nucleotide releasing factor GNRP (Ras-GRF) (which contains 2 PH domains), guanine nucleotide exchange proteins like vav, dbl, SoS and Saccharomyces cerevisiae CDC24, GTPase activating proteins like rasGAP and BEM2/IPL2, and the human break point cluster protein bcr. Cytoskeletal proteins such as dynamin (see IPR001401 from INTERPRO), Caenorhabditis elegans kinesin-like protein unc-104 (see IPR001752 from INTERPRO), spectrin beta-chain, syntrophin (2 PH domains) and S. cerevisiae nuclear migration protein NUM1. Mammalian phosphatidylinositol-specific phospholipase C (PI-PLC) (see IPR000909 from INTERPRO) isoforms gamma and delta. Isoform gamma contains two PH domains, the second one is split into two parts separated by about 400 residues. Oxysterol binding proteins OSBP, S. cerevisiae OSH1 and YHR073w. Mouse protein citron, a putative rho/rac effector that binds to the GTP-bound forms of rho and rac. Several S. cerevisiae proteins involved in cell cycle regulation and bud formation like BEM2, BEM3, BUD4 and the BEM1-binding proteins BOI2 (BEB1) and BOI1 (BOB1). C. elegans protein MIG-10. C. elegans hypothetical proteins C04D8.1, K06H7.4 and ZK632.12. S. cerevisiae hypothetical proteins YBR129c and YHR155w. ; GO: 0005515 protein binding; PDB: 1DYN_B 2DYN_B 3SNH_A 3ZYS_C 1X05_A 2I5F_A 1ZM0_B 1XX0_A 2I5C_C 3A8P_D ....
Probab=97.92 E-value=5.5e-05 Score=51.03 Aligned_cols=64 Identities=28% Similarity=0.494 Sum_probs=54.9
Q ss_pred CCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344 5 EPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ 69 (236)
Q Consensus 5 e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq 69 (236)
+..++|.|.++.. +|.-.+-.-.+..+-...||.|-+|..+.|+|+++|+...+.|+..|+.+.
T Consensus 40 ~~~~~~~i~l~~~-~v~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~i~~~~ 103 (104)
T PF00169_consen 40 DSKPKGSIPLDDC-TVRPDPSSDFLSNKKRKNCFEITTPNGKSYLFSAESEEERKRWIQAIQKAI 103 (104)
T ss_dssp ESSESEEEEGTTE-EEEEETSSTSTSTSSSSSEEEEEETTSEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred ceeeeEEEEecCc-eEEEcCccccccccCCCcEEEEEeCCCcEEEEEcCCHHHHHHHHHHHHHHh
Confidence 5678899999888 777766665556777889999999999999999999999999999998764
No 4
>cd01250 PH_centaurin Centaurin Pleckstrin homology (PH) domain. Centaurin Pleckstrin homology (PH) domain. Centaurin beta and gamma consist of a PH domain, an ArfGAP domain and three ankyrin repeats. Centaurain gamma also has an N-terminal Ras homology domain. Centaurin alpha has a different domain architecture and its PH domain is in a different subfamily. Centaurin can bind to phosphatidlyinositol (3,4,5)P3. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.85 E-value=2.6e-05 Score=54.17 Aligned_cols=33 Identities=21% Similarity=0.570 Sum_probs=30.4
Q ss_pred cceeEEeeeccccceeeeecChhHHHHHHHHHHH
Q 041344 34 DGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA 67 (236)
Q Consensus 34 DgCCfyIgtpqkK~yfLcAETp~aaraWvstl~A 67 (236)
..+||.|.||. +.|+|||+|......|+..|+.
T Consensus 61 ~~~~f~i~~~~-~~~~f~a~s~~~~~~Wi~al~~ 93 (94)
T cd01250 61 RRFCFEVISPT-KTWHFQADSEEERDDWISAIQE 93 (94)
T ss_pred CceEEEEEcCC-cEEEEECCCHHHHHHHHHHHhc
Confidence 47899999999 8999999999999999999864
No 5
>cd01233 Unc104 Unc-104 pleckstrin homology (PH) domain. Unc-104 pleckstrin homology (PH) domain. Unc-104 is a kinesin-like protein containing an N-terminal kinesin catalytic domain, followed by a forkhead associated domain with a C-terminal PH domain. These proteins are responsible for the transport of membrane vesicles along microtubules. The mechanism involves the binding of the PH domain to phosphatidiylinositol (4,5) P2-containing liposomes.
Probab=97.72 E-value=0.0001 Score=54.83 Aligned_cols=61 Identities=16% Similarity=0.270 Sum_probs=46.4
Q ss_pred CCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344 4 NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 4 ~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At 68 (236)
+|..+.|+|.++ +.+|..+|-.-.. .-..+||.|.||. +.|+|||+++.....|+.-|++.
T Consensus 37 ~~~~~~~~I~L~-~~~v~~~~~~~~~--~~~~~~F~I~t~~-rt~~~~A~s~~e~~~Wi~ai~~~ 97 (100)
T cd01233 37 KDPVERGVINLS-TARVEHSEDQAAM--VKGPNTFAVCTKH-RGYLFQALSDKEMIDWLYALNPL 97 (100)
T ss_pred CCccEeeEEEec-ccEEEEccchhhh--cCCCcEEEEECCC-CEEEEEcCCHHHHHHHHHHhhhh
Confidence 467889999998 6667666432110 0135799999985 66999999999999999998764
No 6
>cd01266 PH_Gab Gab (Grb2-associated binder) pleckstrin homology (PH) domain. Gab (Grb2-associated binder) pleckstrin homology (PH) domain. The Gab subfamily includes several Gab proteins, Drosophila DOS and C. elegans SOC-1. They are scaffolding adaptor proteins, which possess N-terminal PH domains and a C-terminus with proline-rich regions and multiple phosphorylation sites. Following activation of growth factor receptors, Gab proteins are tyrosine phosphorylated and activate PI3K, which generates 3-phosphoinositide lipids. By binding to these lipids via the PH domain, Gab proteins remain in proximity to the receptor, leading to further signaling. While not all Gab proteins depend on the PH domain for recruitment, it is required for Gab activity. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display str
Probab=97.69 E-value=0.00014 Score=54.66 Aligned_cols=62 Identities=19% Similarity=0.220 Sum_probs=44.8
Q ss_pred CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHH
Q 041344 3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLH 66 (236)
Q Consensus 3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~ 66 (236)
.++..++|+|.++.-+.|..++.--.+.++ -..+|.|.||. +.|||+|||+.....||..|+
T Consensus 44 ~~~~k~~g~I~L~~~~~v~~~~~~~~~~~~-~~~~f~i~t~~-r~y~l~A~s~ee~~~Wi~~I~ 105 (108)
T cd01266 44 SRKFKLEFVIDLESCSQVDPGLLCTAGNCI-FGYGFDIETIV-RDLYLVAKNEEEMTLWVNCIC 105 (108)
T ss_pred CCCCccceEEECCccEEEcccccccccCcc-cceEEEEEeCC-ccEEEEECCHHHHHHHHHHHH
Confidence 346789999999985554433211122222 34789999984 699999999999999999884
No 7
>cd01260 PH_CNK Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. Connector enhancer of KSR (Kinase suppressor of ras) (CNK) pleckstrin homology (PH) domain. CNK is believed to regulate the activity and the subcellular localization of RAS activated RAF. CNK is composed of N-terminal SAM and PDZ domains along with a central or C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskelet
Probab=97.69 E-value=0.00012 Score=52.95 Aligned_cols=59 Identities=25% Similarity=0.414 Sum_probs=46.5
Q ss_pred CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344 3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At 68 (236)
.+|..++|+|.++.. +|...+ . .+ ...||-|.+|..+.|+|+|||+.-...|+.-|+.|
T Consensus 38 ~~~~~~~~~I~L~~~-~v~~~~-~----~~-k~~~F~I~~~~~~~~~f~a~s~~e~~~Wi~ai~~~ 96 (96)
T cd01260 38 KQDEKAEGLIFLSGF-TIESAK-E----VK-KKYAFKVCHPVYKSFYFAAETLDDLSQWVNHLITA 96 (96)
T ss_pred CCCCccceEEEccCC-EEEEch-h----cC-CceEEEECCCCCcEEEEEeCCHHHHHHHHHHHHhC
Confidence 457788999999876 443321 1 12 46799999999899999999999999999988753
No 8
>cd01246 PH_oxysterol_bp Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding protein (OSBP) Pleckstrin homology (PH) domain. Oxysterol binding proteins are a multigene family that is conserved in yeast, flies, worms, mammals and plants. They all contain a C-terminal oxysterol binding domain, and most contain an N-terminal PH domain. OSBP PH domains bind to membrane phosphoinositides and thus likely play an important role in intracellular targeting. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.68 E-value=0.00013 Score=50.42 Aligned_cols=53 Identities=30% Similarity=0.451 Sum_probs=43.5
Q ss_pred CcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344 7 TVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 7 ~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At 68 (236)
.++|.|.++.. +|...|. +..||.|-+|+.+.|+|+|+|......|+..|+.|
T Consensus 39 ~~~~~i~l~~~-~~~~~~~--------~~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a 91 (91)
T cd01246 39 KPRGTILLSGA-VISEDDS--------DDKCFTIDTGGDKTLHLRANSEEERQRWVDALELA 91 (91)
T ss_pred CceEEEEeceE-EEEECCC--------CCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHhC
Confidence 78999999874 3444331 25799999999999999999999999999988753
No 9
>cd01265 PH_PARIS-1 PARIS-1 pleckstrin homology (PH) domain. PARIS-1 pleckstrin homology (PH) domain. PARIS-1 contains a PH domain and a TBC-type GTPase catalytic domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.67 E-value=0.00014 Score=53.97 Aligned_cols=56 Identities=14% Similarity=0.271 Sum_probs=44.9
Q ss_pred CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHH
Q 041344 3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA 67 (236)
Q Consensus 3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~A 67 (236)
..|..++|.|.++. .+++.+|-+ ..++|-|.||. +.|+|+|+++...+.|+..|.-
T Consensus 37 ~~d~~p~G~I~L~~-~~~~~~~~~-------~~~~F~i~t~~-r~y~l~A~s~~e~~~Wi~al~~ 92 (95)
T cd01265 37 SQDAKPLGRVDLSG-AAFTYDPRE-------EKGRFEIHSNN-EVIALKASSDKQMNYWLQALQS 92 (95)
T ss_pred CCcccccceEECCc-cEEEcCCCC-------CCCEEEEEcCC-cEEEEECCCHHHHHHHHHHHHh
Confidence 35788999999986 556555533 24799999986 5699999999999999988754
No 10
>cd00821 PH Pleckstrin homology (PH) domain. Pleckstrin homology (PH) domain. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.24 E-value=0.0012 Score=42.80 Aligned_cols=56 Identities=29% Similarity=0.516 Sum_probs=44.8
Q ss_pred CCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHH
Q 041344 6 PTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA 67 (236)
Q Consensus 6 ~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~A 67 (236)
..+.|.|.++. ..|...|-+. -..+||.|-++..+.|+||++++.....|+..|+.
T Consensus 40 ~~~~~~i~l~~-~~v~~~~~~~-----~~~~~f~i~~~~~~~~~~~~~s~~~~~~W~~~l~~ 95 (96)
T cd00821 40 YKPKGSIPLSG-AEVEESPDDS-----GRKNCFEIRTPDGRSYLLQAESEEEREEWIEALQS 95 (96)
T ss_pred CCCcceEEcCC-CEEEECCCcC-----CCCcEEEEecCCCcEEEEEeCCHHHHHHHHHHHhc
Confidence 46778888877 6666555444 24589999999989999999999999999998864
No 11
>cd01236 PH_outspread Outspread Pleckstrin homology (PH) domain. Outspread Pleckstrin homology (PH) domain. Outspread contains two PH domains and a C-terminal coiled-coil region. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=97.23 E-value=0.0009 Score=52.08 Aligned_cols=56 Identities=25% Similarity=0.359 Sum_probs=43.4
Q ss_pred CCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHH
Q 041344 5 EPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLH 66 (236)
Q Consensus 5 e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~ 66 (236)
+..++|+|.++.-++|.-. ....| .++||-|.|| .+.|||+|||+...+.|+.-|.
T Consensus 46 ~~~p~G~IdL~~~~~V~~~-~~~~~----~~~~f~I~tp-~R~f~l~Aete~E~~~Wi~~l~ 101 (104)
T cd01236 46 TTLPQGTIDMNQCTDVVDA-EARTG----QKFSICILTP-DKEHFIKAETKEEISWWLNMLM 101 (104)
T ss_pred CcccceEEEccceEEEeec-ccccC----CccEEEEECC-CceEEEEeCCHHHHHHHHHHHH
Confidence 5678999999776665522 22222 3789999999 5889999999999999998764
No 12
>cd01238 PH_Tec Tec pleckstrin homology (PH) domain. Tec pleckstrin homology (PH) domain. Proteins in the Tec family of cytoplasmic protein tyrosine kinases that includes Bruton's tyrosine kinase (BTK), BMX, IL2-inducible T-cell kinase (Itk) and Tec. These proteins generally have an N-terminal PH domain, followed by a Tek homology (TH) domain, a SH3 domain, a SH2 domain and a kinase domain. Tec PH domains tether these proteins to membranes following the activation of PI3K and its subsequent phosphorylation of phosphoinositides. The importance of PH domain membrane anchoring is confirmed by the discovery of a mutation of a critical arginine residue in the BTK PH domain, which causes X-linked agammaglobulinemia (XLA) in humans and a related disorder is mice. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few dis
Probab=97.17 E-value=0.0014 Score=49.65 Aligned_cols=61 Identities=15% Similarity=0.258 Sum_probs=45.6
Q ss_pred CCcceeEEeecCceeeeeccccCC-CCCccceeEEeeeccccceeeeecChhHHHHHHHHHHH
Q 041344 6 PTVKGTITFDENSTIAISPVNFHG-LPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA 67 (236)
Q Consensus 6 ~~~kG~I~fDa~STitiSPvNf~g-~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~A 67 (236)
..++|.|.+...+.|...+.-..+ ..--+.|||-|.|| .+.||+.|+|+.....|+..|+.
T Consensus 44 ~~~kG~I~L~~~~~ve~~~~~~~~~~~~~~~~~F~i~t~-~r~~yl~A~s~~er~~WI~ai~~ 105 (106)
T cd01238 44 GSKKGSIDLSKIKCVETVKPEKNPPIPERFKYPFQVVHD-EGTLYVFAPTEELRKRWIKALKQ 105 (106)
T ss_pred cCcceeEECCcceEEEEecCCcCcccccccCccEEEEeC-CCeEEEEcCCHHHHHHHHHHHHh
Confidence 479999999987766654332221 12235799999997 46788999999999999998863
No 13
>cd01252 PH_cytohesin Cytohesin Pleckstrin homology (PH) domain. Cytohesin Pleckstrin homology (PH) domain. Cytohesin is an ARF-Guanine nucleotide Exchange Factor (GEF), which has a Sec7-type Arf-GEFdomain and a pleckstrin homology domain. It specifically binds phosphatidylinositol-3,4,5-trisphosphate (PtdIns(3,4, 5)P3) via its PH domain and it acts as a PI 3-kinase effector mediating biological responses such as cell adhesion and membrane trafficking. PH domains are only found in eukaryotes. They share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=97.06 E-value=0.0022 Score=49.02 Aligned_cols=59 Identities=19% Similarity=0.388 Sum_probs=44.2
Q ss_pred CCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccc--------------------cceeeeecChhHHHHHHH
Q 041344 4 NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQK--------------------KDYFLCAETPGAARAWVS 63 (236)
Q Consensus 4 ~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqk--------------------K~yfLcAETp~aaraWvs 63 (236)
.|..++|+|.++ +.+|...+- .+ .-.||-|-+|.. +.|+|||||+.-...|+.
T Consensus 35 ~~~~~~g~I~L~-~~~v~~~~~--~~----~~~~F~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~A~s~~e~~~Wi~ 107 (125)
T cd01252 35 TDKEPRGIIPLE-NVSIREVED--PS----KPFCFELFSPSDKQQIKACKTESDGRVVEGNHSVYRISAANDEEMDEWIK 107 (125)
T ss_pred CCCCceEEEECC-CcEEEEccc--CC----CCeeEEEECCccccccccccccccccccccCceEEEEECCCHHHHHHHHH
Confidence 467889999999 444444332 11 336999988875 568899999999999999
Q ss_pred HHHHHH
Q 041344 64 TLHAAQ 69 (236)
Q Consensus 64 tl~Atq 69 (236)
.|+.+.
T Consensus 108 al~~~~ 113 (125)
T cd01252 108 SIKASI 113 (125)
T ss_pred HHHHHH
Confidence 997643
No 14
>cd01247 PH_GPBP Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. Goodpasture antigen binding protein (GPBP) Pleckstrin homology (PH) domain. The GPBP protein is a kinase that phosphorylates an N-terminal region of the alpha 3 chain of type IV collagen , which is commonly known as the goodpasture antigen. It has has an N-terminal PH domain and a C-terminal START domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cyt
Probab=97.02 E-value=0.0017 Score=48.38 Aligned_cols=52 Identities=21% Similarity=0.400 Sum_probs=40.9
Q ss_pred CCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHH
Q 041344 6 PTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLH 66 (236)
Q Consensus 6 ~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~ 66 (236)
+.++|.|.+..- +|. + +..|.|+|.|.++..+.|+|.|++|.....|+..|.
T Consensus 38 ~~~~G~I~L~~~-~i~--~------~~~~~~~F~i~~~~~r~~~L~A~s~~e~~~Wi~al~ 89 (91)
T cd01247 38 HGCRGSIFLKKA-IIA--A------HEFDENRFDISVNENVVWYLRAENSQSRLLWMDSVV 89 (91)
T ss_pred CCCcEEEECccc-EEE--c------CCCCCCEEEEEeCCCeEEEEEeCCHHHHHHHHHHHh
Confidence 457999988752 222 2 246789999988877999999999999999998763
No 15
>smart00233 PH Pleckstrin homology domain. Domain commonly found in eukaryotic signalling proteins. The domain family possesses multiple functions including the abilities to bind inositol phosphates, and various proteins. PH domains have been found to possess inserted domains (such as in PLC gamma, syntrophins) and to be inserted within other domains. Mutations in Brutons tyrosine kinase (Btk) within its PH domain cause X-linked agammaglobulinaemia (XLA) in patients. Point mutations cluster into the positively charged end of the molecule around the predicted binding site for phosphatidylinositol lipids.
Probab=96.76 E-value=0.0092 Score=38.88 Aligned_cols=59 Identities=29% Similarity=0.442 Sum_probs=43.2
Q ss_pred CCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344 6 PTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 6 ~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At 68 (236)
..+.+.|.++.. .|...+-+-. .-...||.|.++..+.|+|+++|+.....|+..|+.+
T Consensus 42 ~~~~~~i~l~~~-~v~~~~~~~~---~~~~~~f~l~~~~~~~~~f~~~s~~~~~~W~~~i~~~ 100 (102)
T smart00233 42 YKPKGSIDLSGI-TVREAPDPDS---AKKPHCFEIKTADRRSYLLQAESEEEREEWVDALRKA 100 (102)
T ss_pred CCCceEEECCcC-EEEeCCCCcc---CCCceEEEEEecCCceEEEEcCCHHHHHHHHHHHHHh
Confidence 355667777665 4444333211 1235799999999999999999999999999999754
No 16
>cd01254 PH_PLD Phospholipase D (PLD) pleckstrin homology (PH) domain. Phospholipase D (PLD) pleckstrin homology (PH) domain. PLD hydrolyzes phosphatidylcholine to phosphatidic acid (PtdOH), which can bind target proteins. PLD contains a PH domain, a PX domain and four conserved PLD signature domains. The PLD PH domain is specific for bisphosphorylated inositides. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=96.34 E-value=0.015 Score=45.18 Aligned_cols=62 Identities=10% Similarity=0.085 Sum_probs=47.2
Q ss_pred CCCCcceeEEeecCceeeeeccc------cCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHH
Q 041344 4 NEPTVKGTITFDENSTIAISPVN------FHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLH 66 (236)
Q Consensus 4 ~e~~~kG~I~fDa~STitiSPvN------f~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~ 66 (236)
.++.++|+|.||.+..|...-.- -......-.|+|-|-||.++ |.|.|+|..-.+.|+.-|.
T Consensus 52 ~~~~~~~vil~D~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~R~-~~l~a~s~~~~~~Wi~~i~ 119 (121)
T cd01254 52 SSAQILDVILFDVDFKVNGGGKEDISLAVELKDITGLRHGLKITNSNRS-LKLKCKSSRKLKQWMASIE 119 (121)
T ss_pred CCCceeeEEEEcCCccEEeCCcccccccccccccCCCceEEEEEcCCcE-EEEEeCCHHHHHHHHHHHH
Confidence 46789999999999988754321 00011234799999999876 9999999999999998774
No 17
>cd01264 PH_melted Melted pleckstrin homology (PH) domain. Melted pleckstrin homology (PH) domain. The melted protein has a C-terminal PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=96.26 E-value=0.016 Score=45.36 Aligned_cols=58 Identities=19% Similarity=0.215 Sum_probs=41.9
Q ss_pred CcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHH
Q 041344 7 TVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA 67 (236)
Q Consensus 7 ~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~A 67 (236)
+++|+|.++.-++|....- -...+-.-.||-|.||. +.|||+|+++..+..|+.-|.-
T Consensus 42 ~~~g~IdL~~~~sVk~~~~--~~~~~~~~~~Fei~tp~-rt~~l~A~se~e~e~WI~~i~~ 99 (101)
T cd01264 42 PDDCSIDLSKIRSVKAVAK--KRRDRSLPKAFEIFTAD-KTYILKAKDEKNAEEWLQCLNI 99 (101)
T ss_pred CCCceEEcccceEEeeccc--cccccccCcEEEEEcCC-ceEEEEeCCHHHHHHHHHHHHh
Confidence 3469999988887653210 00001114799999998 8999999999999999987753
No 18
>cd00900 PH-like Pleckstrin homology-like domain. Pleckstrin homology-like domain. This family includes the PH domain, both the Shc-like and IRS-like PTB domains, the ran-binding domain, the EVH1 domain, a domain in neurobeachin and the third domain of FERM. All of these domains have a PH fold, but lack significant sequence similarity. They are generally involved in targeting to protein to the appropriate cellular location or interacting with a binding partner. The PH domain is commonly found in eukaryotic signaling proteins. This domain family possesses multiple functions including the ability to bind inositol phosphates and to other proteins.
Probab=95.50 E-value=0.071 Score=34.79 Aligned_cols=32 Identities=28% Similarity=0.589 Sum_probs=28.8
Q ss_pred ceeEEeeecc--ccceeeeecChhHHHHHHHHHH
Q 041344 35 GCCFYIGTPQ--KKDYFLCAETPGAARAWVSTLH 66 (236)
Q Consensus 35 gCCfyIgtpq--kK~yfLcAETp~aaraWvstl~ 66 (236)
.-||.|-++. .+.|+||+||+..+..|+..|+
T Consensus 64 ~~~F~i~~~~~~~~~~~~~~~~~~~~~~W~~al~ 97 (99)
T cd00900 64 PNCFAIVTKDRGRRVFVFQADSEEEAQEWVEALQ 97 (99)
T ss_pred CceEEEECCCCCcEEEEEEcCCHHHHHHHHHHHh
Confidence 4699999996 8899999999999999998875
No 19
>cd01257 PH_IRS Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. Insulin receptor substrate (IRS) pleckstrin homology (PH) domain. PH domains are only found in eukaryotes, and are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes. The IRS PH domain targets IRS molecules to the plasma membrane, usually in response to insulin stimulation.
Probab=95.26 E-value=0.07 Score=41.25 Aligned_cols=53 Identities=17% Similarity=0.208 Sum_probs=43.1
Q ss_pred CCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHH
Q 041344 6 PTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTL 65 (236)
Q Consensus 6 ~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl 65 (236)
..|+|+|.++.-.+|.-.| ..+ .+.||-|.||. ..|+|.|||....+.|+..|
T Consensus 46 ~~p~~vI~L~~c~~v~~~~-----d~k-~~~~f~i~t~d-r~f~l~aese~E~~~Wi~~i 98 (101)
T cd01257 46 SAPKRVIPLESCFNINKRA-----DAK-HRHLIALYTRD-EYFAVAAENEAEQDSWYQAL 98 (101)
T ss_pred CCceEEEEccceEEEeecc-----ccc-cCeEEEEEeCC-ceEEEEeCCHHHHHHHHHHH
Confidence 6799999999887765433 123 25899999988 58999999999999999876
No 20
>cd01253 PH_beta_spectrin Beta-spectrin pleckstrin homology (PH) domain. Beta-spectrin pleckstrin homology (PH) domain. Beta spectrin binds actin and functions as a major component of the cytoskeleton underlying cellular membranes. Beta spectrin consists of multiple spectrin repeats followed by a PH domain, which binds to Inositol-1,4,5-Trisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. PH domains are often involved in targeting proteins to the plasma membrane via lipid binding. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.20 E-value=0.051 Score=39.77 Aligned_cols=32 Identities=19% Similarity=0.473 Sum_probs=30.1
Q ss_pred eeEEeeeccccceeeeecChhHHHHHHHHHHH
Q 041344 36 CCFYIGTPQKKDYFLCAETPGAARAWVSTLHA 67 (236)
Q Consensus 36 CCfyIgtpqkK~yfLcAETp~aaraWvstl~A 67 (236)
-+|.|-+|..+.|+|+|+++.....|+..|++
T Consensus 72 ~~F~l~~~~~~~~~f~a~s~e~~~~Wi~aL~~ 103 (104)
T cd01253 72 HVFRLRLPDGAEFLFQAPDEEEMSSWVRALKS 103 (104)
T ss_pred eEEEEEecCCCEEEEECCCHHHHHHHHHHHhc
Confidence 69999999999999999999999999998875
No 21
>cd01245 PH_RasGAP_CG5898 RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. RAS GTPase-activating protein (GAP) CG5898 Pleckstrin homology (PH) domain. This protein has a domain architecture of SH2-SH3-SH2-PH-C2-Ras_GAP. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=95.19 E-value=0.053 Score=42.06 Aligned_cols=58 Identities=21% Similarity=0.430 Sum_probs=39.9
Q ss_pred CCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccc-cceeeeecChhHHHHHHHHHHH
Q 041344 4 NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQK-KDYFLCAETPGAARAWVSTLHA 67 (236)
Q Consensus 4 ~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqk-K~yfLcAETp~aaraWvstl~A 67 (236)
.|..++|.|-... . .|-||.=--..+ -.||-|.+|.. --||+||+| .....|+..|++
T Consensus 39 ~~~~p~gli~l~~-~--~V~~v~ds~~~r--~~cFel~~~~~~~~y~~~a~~-~er~~Wi~~l~~ 97 (98)
T cd01245 39 KKTKPIGLIDLSD-A--YLYPVHDSLFGR--PNCFQIVERALPTVYYSCRSS-EERDKWIESLQA 97 (98)
T ss_pred CCCCccceeeccc-c--EEEEccccccCC--CeEEEEecCCCCeEEEEeCCH-HHHHHHHHHHhc
Confidence 4667777444332 2 444543221111 28999999987 679999999 999999999875
No 22
>cd01219 PH_FGD FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD (faciogenital dysplasia protein) pleckstrin homology (PH) domain. FGD has a RhoGEF (DH) domain, followed by a PH domain, a FYVE domain and a C-terminal PH domain. FGD is a guanine nucleotide exchange factor that activates the Rho GTPase Cdc42. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.61 E-value=0.2 Score=37.62 Aligned_cols=34 Identities=21% Similarity=0.301 Sum_probs=30.6
Q ss_pred cceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344 34 DGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 34 DgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At 68 (236)
.-++|.|-++| +.|.|||+|+..=..|+..|..+
T Consensus 65 ~~~~F~I~~~~-rsf~l~A~s~eEk~~W~~ai~~~ 98 (101)
T cd01219 65 RPHSFLVSGKQ-RCLELQARTQKEKNDWVQAIFSI 98 (101)
T ss_pred cCceEEEecCC-cEEEEEcCCHHHHHHHHHHHHHH
Confidence 46899999998 89999999999999999998754
No 23
>cd01244 PH_RasGAP_CG9209 RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. RAS_GTPase activating protein (GAP)_CG9209 pleckstrin homology (PH) domain. This protein consists of two C2 domains, followed by a RasGAP domain, a PH domain and a BTK domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=94.27 E-value=0.15 Score=39.21 Aligned_cols=56 Identities=14% Similarity=0.044 Sum_probs=39.4
Q ss_pred CCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHH
Q 041344 6 PTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLH 66 (236)
Q Consensus 6 ~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~ 66 (236)
..++|.|-+..-..|-.-.-...+ ...||=|.||. +.||+.|+|+.....|+..|+
T Consensus 41 ~~~~g~I~L~~i~~ve~v~~~~~~----~~~~fqivt~~-r~~yi~a~s~~E~~~Wi~al~ 96 (98)
T cd01244 41 CKKSALIKLAAIKGTEPLSDKSFV----NVDIITIVCED-DTMQLQFEAPVEATDWLNALE 96 (98)
T ss_pred CceeeeEEccceEEEEEcCCcccC----CCceEEEEeCC-CeEEEECCCHHHHHHHHHHHh
Confidence 356777776655544322221112 24699999996 589999999999999999885
No 24
>cd01222 PH_clg Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg (common-site lymphoma/leukemia guanine nucleotide exchange factor) pleckstrin homology (PH) domain. Clg contains a RhoGEF (DH) domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=91.62 E-value=0.58 Score=36.27 Aligned_cols=55 Identities=18% Similarity=0.218 Sum_probs=41.5
Q ss_pred eecCceeeeeccccCCCCCccceeEEeeec-ccc-ceeeeecChhHHHHHHHHHHHH
Q 041344 14 FDENSTIAISPVNFHGLPKYDGCCFYIGTP-QKK-DYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 14 fDa~STitiSPvNf~g~~kYDgCCfyIgtp-qkK-~yfLcAETp~aaraWvstl~At 68 (236)
|.=.+.|.+|-+.+..-+.-|.|||+|+.. +-+ .|-|+|-|+..=+.|+..|+.+
T Consensus 38 y~~K~~i~~~~l~i~e~~~~d~~~F~v~~~~~p~~~~~l~A~s~e~K~~W~~~i~~~ 94 (97)
T cd01222 38 YQFKAYIPCKNLMLVEHLPGEPLCFRVIPFDDPKGALQLTARNREEKRIWTQQLKRA 94 (97)
T ss_pred eEEEEEEEecceEEecCCCCCCcEEEEEecCCCceEEEEEecCHHHHHHHHHHHHHH
Confidence 444566777766555555556799999666 334 6889999999999999998765
No 25
>PF15413 PH_11: Pleckstrin homology domain; PDB: 3MDB_D 3FEH_A 3LJU_X 3FM8_C.
Probab=90.76 E-value=0.84 Score=35.11 Aligned_cols=37 Identities=30% Similarity=0.395 Sum_probs=29.3
Q ss_pred CCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344 31 PKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 31 ~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At 68 (236)
..-+.+.|+|-||+ |.|+|.+||...-.+|+..|.++
T Consensus 76 ~~~~~~~~~i~T~~-kt~~l~~~t~~d~~~Wi~aL~~~ 112 (112)
T PF15413_consen 76 GEIHLKVFSIFTPT-KTFHLRCETREDRYDWIEALQEA 112 (112)
T ss_dssp SS-SSEEEEEE-SS--EEEEEESSHHHHHHHHHHHHH-
T ss_pred cCcCCCCcEEECCC-cEEEEEECCHHHHHHHHHHHHhC
Confidence 44677999998885 59999999999999999998764
No 26
>PF14593 PH_3: PH domain; PDB: 1W1H_D 1W1D_A 1W1G_A 2VKI_A.
Probab=90.11 E-value=0.58 Score=36.90 Aligned_cols=49 Identities=31% Similarity=0.727 Sum_probs=31.0
Q ss_pred CcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHH
Q 041344 7 TVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA 67 (236)
Q Consensus 7 ~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~A 67 (236)
..||.|.++ +.+++..+|+. +|.|-|| ++.|+|.. ..+-|..|+..|-.
T Consensus 49 ~~KGeI~~~--~~l~v~~k~~~--------~F~I~tp-~RtY~l~d-~~~~A~~W~~~I~~ 97 (104)
T PF14593_consen 49 VLKGEIPWS--KELSVEVKSFK--------TFFIHTP-KRTYYLED-PEGNAQQWVEAIEE 97 (104)
T ss_dssp EEEEEE--S--TT-EEEECSSS--------EEEEEET-TEEEEEE--TTS-HHHHHHHHHH
T ss_pred eECcEEecC--CceEEEEccCC--------EEEEECC-CcEEEEEC-CCCCHHHHHHHHHH
Confidence 457888887 44455556654 7999999 66677665 45668889987743
No 27
>cd01248 PH_PLC Phospholipase C (PLC) pleckstrin homology (PH) domain. Phospholipase C (PLC) pleckstrin homology (PH) domain. There are several isozymes of PLC (beta, gamma, delta, epsilon. zeta). While, PLC beta, gamma and delta all have N-terminal PH domains, lipid binding specificity is not conserved between them. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=88.30 E-value=0.91 Score=34.48 Aligned_cols=36 Identities=31% Similarity=0.445 Sum_probs=30.4
Q ss_pred CccceeEEeeeccc---cceeeeecChhHHHHHHHHHHH
Q 041344 32 KYDGCCFYIGTPQK---KDYFLCAETPGAARAWVSTLHA 67 (236)
Q Consensus 32 kYDgCCfyIgtpqk---K~yfLcAETp~aaraWvstl~A 67 (236)
....|||-|..-.. |.+-|+|.++..|+.|+..|++
T Consensus 76 ~~e~~~fTIiy~~~~~~k~L~lVA~s~~~a~~W~~gL~~ 114 (115)
T cd01248 76 SLEERCFTIVYGTDLNLKSLDLVAPSEEEAKTWVSGLRK 114 (115)
T ss_pred CccccEEEEEECCCCCeeEEEEEECCHHHHHHHHHHHhh
Confidence 36779998876554 7799999999999999999975
No 28
>cd01220 PH_CDEP Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. Chondrocyte-derived ezrin-like domain containing protein (CDEP) Pleckstrin homology (PH) domain. CDEP consists of a Ferm domain, a rhoGEF (DH) domain followed by two PH domains. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=87.04 E-value=1.1 Score=34.42 Aligned_cols=32 Identities=28% Similarity=0.393 Sum_probs=28.7
Q ss_pred eeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344 36 CCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 36 CCfyIgtpqkK~yfLcAETp~aaraWvstl~At 68 (236)
.||-|-+|+ |.|.|+|.|+..-..|+..|..+
T Consensus 65 ~~F~I~~~~-ks~~l~A~s~~Ek~~Wi~~i~~a 96 (99)
T cd01220 65 HCFTIFGGQ-CAITVAASTRAEKEKWLADLSKA 96 (99)
T ss_pred eeEEEEcCC-eEEEEECCCHHHHHHHHHHHHHH
Confidence 699999885 67999999999999999999765
No 29
>cd01227 PH_Dbs Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs (DBL's big sister) pleckstrin homology (PH) domain. Dbs is a guanine nucleotide exchange factor (GEF), which contains spectrin repeats, a rhoGEF (DH) domain and a PH domain. The Dbs PH domain participates in binding to both the Cdc42 and RhoA GTPases. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=83.18 E-value=4.7 Score=33.21 Aligned_cols=56 Identities=23% Similarity=0.349 Sum_probs=41.8
Q ss_pred eEEeecCceeeeeccccCCCCCccceeEEeeeccccc-eeeeecChhHHHHHHHHHH
Q 041344 11 TITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKD-YFLCAETPGAARAWVSTLH 66 (236)
Q Consensus 11 ~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~-yfLcAETp~aaraWvstl~ 66 (236)
...|-=-+.|.+|-+.+---.+-|.|+|=|-+....+ |-|.|-||..=.+|+..|+
T Consensus 56 ~p~Y~yK~~ikls~lglte~v~gd~~kFeiw~~~~~~~yilqA~t~e~K~~Wv~~I~ 112 (133)
T cd01227 56 APSYSFKQSLKMTAVGITENVKGDTKKFEIWYNAREEVYILQAPTPEIKAAWVNEIR 112 (133)
T ss_pred ceeEEEeeeEEeecccccccCCCCccEEEEEeCCCCcEEEEEcCCHHHHHHHHHHHH
Confidence 3344444566666665555566789999887766655 8899999999999999986
No 30
>cd01232 PH_TRIO Trio pleckstrin homology (PH) domain. Trio pleckstrin homology (PH) domain. Trio is a multidomain signaling protein that contains two RhoGEF(DH)-PH domains in tandem. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=82.32 E-value=2.7 Score=33.50 Aligned_cols=49 Identities=22% Similarity=0.472 Sum_probs=39.6
Q ss_pred ceeeeeccccCCCCCccceeEEe--eecc--ccceeeeecChhHHHHHHHHHH
Q 041344 18 STIAISPVNFHGLPKYDGCCFYI--GTPQ--KKDYFLCAETPGAARAWVSTLH 66 (236)
Q Consensus 18 STitiSPvNf~g~~kYDgCCfyI--gtpq--kK~yfLcAETp~aaraWvstl~ 66 (236)
+.|.+|-+.+--...-|.|+|=| ++|. .+.|-|.|-||..=.+|+..|+
T Consensus 57 ~~ikls~l~l~e~v~gd~~kF~i~~~~~~~~~~~~ilqA~s~e~K~~W~~~I~ 109 (114)
T cd01232 57 SKLQVSKMGLTEHVEGDPCRFALWSGDPPISDNRIILKANSQETKQEWVKKIR 109 (114)
T ss_pred cceeeeeeEeEEccCCCCceEEEEeCCCCCCceEEEEECCCHHHHHHHHHHHH
Confidence 56777777776667779999966 6665 3569999999999999999986
No 31
>PF10824 DUF2580: Protein of unknown function (DUF2580); InterPro: IPR022536 This entry represents the ESX-1 secretion-associated protein EspC protein family.
Probab=81.72 E-value=6.9 Score=27.37 Aligned_cols=30 Identities=27% Similarity=0.346 Sum_probs=21.2
Q ss_pred HHhhhccchHHHHHHHHHhhhhhhhHHHHH
Q 041344 141 MKETLRVKDEELQNLARDLRARDSTIRDIA 170 (236)
Q Consensus 141 mkEtLrVKDeEl~~LardlraRD~tIkeia 170 (236)
|-+.|+|-.++|+.+++.+..--..+.+..
T Consensus 1 Ms~~l~Vdp~~Lr~~A~~~~~~A~~~~~~~ 30 (100)
T PF10824_consen 1 MSDPLHVDPEALRQAAAQLDDIADQLAAAA 30 (100)
T ss_pred CCCCceECHHHHHHHHHHHHHHHHHHHHHH
Confidence 557899999999999988654443333333
No 32
>cd01230 PH_EFA6 EFA6 Pleckstrin Homology (PH) domain. EFA6 Pleckstrin Homology (PH) domain. EFA6 is an guanine nucleotide exchange factor for ARF6, which is involved in membrane recycling. It consists of a SEC7 domain followed by a PH domain. The EFA6 PH domain regulates its association with the plasma membrane. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=78.48 E-value=3.1 Score=33.12 Aligned_cols=33 Identities=9% Similarity=0.414 Sum_probs=30.2
Q ss_pred eEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344 37 CFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ 69 (236)
Q Consensus 37 CfyIgtpqkK~yfLcAETp~aaraWvstl~Atq 69 (236)
=|.|-||..++|+|-|.+...+..||..|+.+.
T Consensus 79 VF~L~~~~g~~~lfqA~~~ee~~~Wi~~I~~~~ 111 (117)
T cd01230 79 VFRLRTADWREFLFQTSSLKELQSWIERINVVA 111 (117)
T ss_pred EEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999998764
No 33
>cd01241 PH_Akt Akt pleckstrin homology (PH) domain. Akt pleckstrin homology (PH) domain. Akt (Protein Kinase B (PKB)) is a phosphatidylinositol 3'-kinase (PI3K)-dependent Ser/Thr kinase. The PH domain recruits Akt to the plasma membrane by binding to phosphoinositides (PtdIns-3,4-P2) and is required for activation. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=77.90 E-value=5.8 Score=29.77 Aligned_cols=36 Identities=19% Similarity=0.379 Sum_probs=25.2
Q ss_pred CCccceeEEeeecc----ccceeeeecChhHHHHHHHHHHH
Q 041344 31 PKYDGCCFYIGTPQ----KKDYFLCAETPGAARAWVSTLHA 67 (236)
Q Consensus 31 ~kYDgCCfyIgtpq----kK~yfLcAETp~aaraWvstl~A 67 (236)
.+....||.|...+ ...+| +|||+.....|+.-|+.
T Consensus 61 ~~~~~~~F~i~~~~~~~~~~r~f-~a~s~ee~~eWi~ai~~ 100 (102)
T cd01241 61 ERPRPNTFIIRCLQWTTVIERTF-HVESPEEREEWIHAIQT 100 (102)
T ss_pred cCCCcceEEEEeccCCcccCEEE-EeCCHHHHHHHHHHHHh
Confidence 34556799997322 11244 78999999999998864
No 34
>cd01261 PH_SOS Son of Sevenless (SOS) Pleckstrin homology (PH) domain. Son of Sevenless (SOS) Pleckstrin homology (PH) domain. SOS is a Ras guanine nucleotide exchange factor. It has a RhoGEF (DbH) domain, a PH domain, and a RasGEF domain. The SOS PH domain can bind to inositol 1,4,5-triphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=71.22 E-value=7.9 Score=30.89 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=30.3
Q ss_pred ceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344 35 GCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ 69 (236)
Q Consensus 35 gCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq 69 (236)
-+.|+|-+.+.+-|.|||.|+..=..|...|..++
T Consensus 75 knaF~I~~~~~~s~~l~Akt~eeK~~Wm~~l~~~~ 109 (112)
T cd01261 75 KNAFEIILKDGNSVIFSAKNAEEKNNWMAALISVQ 109 (112)
T ss_pred CceEEEEcCCCCEEEEEECCHHHHHHHHHHHHHHh
Confidence 57899998766789999999999999999886654
No 35
>PF15409 PH_8: Pleckstrin homology domain
Probab=70.71 E-value=16 Score=28.45 Aligned_cols=54 Identities=22% Similarity=0.327 Sum_probs=38.2
Q ss_pred CCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344 4 NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 4 ~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At 68 (236)
++...+|.|.+ ..|+|.++ -+.|||-|-+-. .-|.|-|.++.....||..|+.+
T Consensus 35 ~~~~~rGsi~v-~~a~is~~---------~~~~~I~idsg~-~i~hLKa~s~~~f~~Wv~aL~~a 88 (89)
T PF15409_consen 35 NSGKLRGSIDV-SLAVISAN---------KKSRRIDIDSGD-EIWHLKAKSQEDFQRWVSALQKA 88 (89)
T ss_pred CCCeeEeEEEc-cceEEEec---------CCCCEEEEEcCC-eEEEEEcCCHHHHHHHHHHHHhc
Confidence 44567787743 23333332 257999997653 36999999999999999998764
No 36
>cd01263 PH_anillin Anillin Pleckstrin homology (PH) domain. Anillin Pleckstrin homology (PH) domain. Anillin is an actin binding protein involved in cytokinesis. It has a C-terminal PH domain, which has been shown to be necessary, but not sufficient for targetting of anillin to ectopic septin containing foci . PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPAses, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=68.70 E-value=8.2 Score=31.15 Aligned_cols=59 Identities=15% Similarity=0.154 Sum_probs=38.4
Q ss_pred CCcceeEEeecCceeeeeccccCCCCCccceeEEeeecc-------------------ccceeeeecChhHHHHHHHHHH
Q 041344 6 PTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQ-------------------KKDYFLCAETPGAARAWVSTLH 66 (236)
Q Consensus 6 ~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpq-------------------kK~yfLcAETp~aaraWvstl~ 66 (236)
..|.|.|-++.-.+..+.+..=- -..-.=.|.|-+.| +.-|||.|||+..-..|++.|.
T Consensus 43 ~~Plg~I~L~~c~~~~v~~~~r~--~c~Rp~tF~i~~~~~~~~~~~~~~~~~~~~~~~r~~~~lsaDt~eer~~W~~ain 120 (122)
T cd01263 43 KGPTGLIDLSTCTSSEGASAVRD--ICARPNTFHLDVWRPKMETDDETLVSQCRRGIERLRVMLSADTKEERQTWLSLLN 120 (122)
T ss_pred CCceEEEEhhhCcccccccCChh--hcCCCCeEEEEEecccccccccceeeccCCceeEEEEEEecCCHHHHHHHHHHHh
Confidence 57889999888776666332100 01111147774432 2338999999999999999875
No 37
>PF15410 PH_9: Pleckstrin homology domain; PDB: 1WJM_A 1BTN_A 1MPH_A.
Probab=68.26 E-value=9.7 Score=29.41 Aligned_cols=34 Identities=15% Similarity=0.390 Sum_probs=28.1
Q ss_pred cceeEEeeeccccceeeeecChhHHHHHHHHHHH
Q 041344 34 DGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA 67 (236)
Q Consensus 34 DgCCfyIgtpqkK~yfLcAETp~aaraWvstl~A 67 (236)
--++|.+-|+.-.+|.|-|+++.....|+..|..
T Consensus 83 r~~VFrL~~~dg~e~Lfqa~~~~~m~~Wi~~IN~ 116 (119)
T PF15410_consen 83 RKNVFRLRTADGSEYLFQASDEEEMNEWIDAINY 116 (119)
T ss_dssp CSSEEEEE-TTS-EEEEE-SSHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCEEEEECCCHHHHHHHHHHHhh
Confidence 4579999999999999999999999999999853
No 38
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=67.89 E-value=63 Score=34.58 Aligned_cols=110 Identities=13% Similarity=0.165 Sum_probs=48.0
Q ss_pred hhHHHHHHHHHHHHHHHHHh--hhccccccCCCCCCCcHHHHHhhhccchHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 041344 102 STAQECSKEIEAAMQISLRN--ALGTMTNRITDGPMDDLSIMKETLRVKDEELQNLARDLRARDSTIRDIADKLSETAEA 179 (236)
Q Consensus 102 ~ta~Ea~keieaaMqiS~r~--alg~~~n~~~~g~~Ddl~imkEtLrVKDeEl~~LardlraRD~tIkeiadkLseTAeA 179 (236)
.+-.+|..-++.+.+++.=- ..|.. .+...+++|...+=.......-+||+.|-..|...-.-..+..+.+.+..+.
T Consensus 100 ~~~~~Al~~Lk~lf~l~~Wf~~~Y~~~-~~~~~~~F~~p~~p~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1123)
T PRK11448 100 GDHREALMGLKLAFRLAVWFHRTYGKD-WDFKPGPFVPPEDPENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQE 178 (1123)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHcCCc-cCCCCCCCCCCCCCcchhhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Confidence 45566666676666655332 22221 1234455554433211122244555555555422111222222222222222
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041344 180 AEAAASAAHTMDEQRRIACAEIERINKESTKQL 212 (236)
Q Consensus 180 AEaAAsaaH~~de~r~~~~sEierL~~~~~~q~ 212 (236)
.+.....+-...++...+..|++.|+.+...+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (1123)
T PRK11448 179 LVALEGLAAELEEKQQELEAQLEQLQEKAAETS 211 (1123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 222222233345566667777777766554443
No 39
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=66.87 E-value=26 Score=30.29 Aligned_cols=56 Identities=23% Similarity=0.405 Sum_probs=45.9
Q ss_pred hHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 041344 149 DEELQNLARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKE 207 (236)
Q Consensus 149 DeEl~~LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~ 207 (236)
-+||..|+.+++.....|++-+.|+..--..++++..-+. ..+.-.|.|.|++|..
T Consensus 92 ~~eL~~l~~~~e~~RK~~ke~~~k~~k~~~~a~~~leKAK---~~Y~~~c~e~Ekar~~ 147 (234)
T cd07652 92 SDELSSLAKTVEKSRKSIKETGKRAEKKVQDAEAAAEKAK---ARYDSLADDLERVKTG 147 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhcc
Confidence 3679999999999999999999999888777777665443 4677789999999865
No 40
>cd01259 PH_Apbb1ip Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip (Amyloid beta (A4) Precursor protein-Binding, family B, member 1 Interacting Protein) pleckstrin homology (PH) domain. Apbb1ip consists of a Ras-associated domain and a PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=65.93 E-value=7.4 Score=32.10 Aligned_cols=33 Identities=24% Similarity=0.570 Sum_probs=25.2
Q ss_pred eeEEeeeccc-----cc-eeeeecChhHHHHHHHHHHHH
Q 041344 36 CCFYIGTPQK-----KD-YFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 36 CCfyIgtpqk-----K~-yfLcAETp~aaraWvstl~At 68 (236)
=||+|=-|+. ++ -+||||....-+.|++-||-+
T Consensus 69 ~~F~~K~~~~q~~~s~~ik~lCaeDe~t~~~W~ta~Ri~ 107 (114)
T cd01259 69 YCFGFKAVGDQSKGSQSIKYLCAEDLPTLDRWLTAIRIA 107 (114)
T ss_pred ceEEEeccccCcccchhheeeccCCHHHHHHHHHHHHHH
Confidence 3777755542 22 689999999999999999854
No 41
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=65.62 E-value=52 Score=24.26 Aligned_cols=53 Identities=25% Similarity=0.354 Sum_probs=39.4
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041344 154 NLARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTK 210 (236)
Q Consensus 154 ~LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~~ 210 (236)
.|-..||++..+=.|| +.+-.+--++.+=---.+++.+.+..||++|+++++.
T Consensus 5 aL~~EirakQ~~~eEL----~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 5 ALEAEIRAKQAIQEEL----TKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888888766665 3444444555566666789999999999999999875
No 42
>PF06013 WXG100: Proteins of 100 residues with WXG; InterPro: IPR010310 ESAT-6 is a small protein appears to be of fundamental importance in virulence and protective immunity in Mycobacterium tuberculosis. Homologues have been detected in other Gram-positive bacterial species. It may represent a novel secretion system potentially driven by the PF01580 from PFAM domains in the YukA-like proteins []. Members of this protein family include secretion targets for type main variants of type VII secretion systems (T7SS), one found in the Actinobacteria, one found in the Firmicutes. This model was derived through iteration from PF06013 from PFAM. The best characterised member of this family is ESAT-6 from Mycobacterium tuberculosis. Members of this family usually are ~100 amino acids in length but occasionally have long C-terminal extension. ; PDB: 3FAV_A 1WA8_A 3Q4H_B 2KG7_A 2VRZ_B 2VS0_B 3OGI_A 3H6P_B 3GVM_B 3GWK_C ....
Probab=65.31 E-value=37 Score=22.50 Aligned_cols=66 Identities=17% Similarity=0.304 Sum_probs=43.8
Q ss_pred hhccchHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH--HhhhhhhHHHHHHHHHHHHHHHHHHH
Q 041344 144 TLRVKDEELQNLARDLRARDSTIRDIADKLSETAEAAEAA--ASAAHTMDEQRRIACAEIERINKEST 209 (236)
Q Consensus 144 tLrVKDeEl~~LardlraRD~tIkeiadkLseTAeAAEaA--AsaaH~~de~r~~~~sEierL~~~~~ 209 (236)
+++|..++|+.++..+...-..|+++.+.|....+...+. -.++-..+...+.....++++...+.
T Consensus 1 qi~vd~~~l~~~a~~~~~~~~~l~~~~~~l~~~~~~l~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~ 68 (86)
T PF06013_consen 1 QIKVDPEQLRAAAQQLQAQADELQSQLQQLESSIDSLQASWQGEAADAFQDKFEEWNQAFRQLNEALE 68 (86)
T ss_dssp HBTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGBTSSTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999988999888888777665321 12233334444444444554444443
No 43
>PRK14161 heat shock protein GrpE; Provisional
Probab=65.28 E-value=29 Score=29.71 Aligned_cols=58 Identities=24% Similarity=0.318 Sum_probs=40.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHhh
Q 041344 159 LRARDSTIRDIADKLSETAEAAE-AAASAAHTMDEQRRIACAEIERINKESTKQLETCV 216 (236)
Q Consensus 159 lraRD~tIkeiadkLseTAeAAE-aAAsaaH~~de~r~~~~sEierL~~~~~~q~~~~~ 216 (236)
|..-..+|..|+++.-+|+++-- ....-...+.++...+.+|+|-+||..+++.+...
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~ 64 (178)
T PRK14161 6 IENNEQTINDIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAK 64 (178)
T ss_pred ccccHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456688888888888877652 23334455667777788899988888888776543
No 44
>PRK11637 AmiB activator; Provisional
Probab=64.82 E-value=64 Score=29.77 Aligned_cols=57 Identities=9% Similarity=0.193 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhh
Q 041344 165 TIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTKQLETCVLKVNF 221 (236)
Q Consensus 165 tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~~q~~~~~l~lk~ 221 (236)
-|+++-.+|.++.+.-...-...-.++.+-..+-.||+.++++++.+.+...-+++.
T Consensus 76 ~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra 132 (428)
T PRK11637 76 QLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDA 132 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444333333333344444455555556666666655555554444443
No 45
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=63.68 E-value=40 Score=38.40 Aligned_cols=75 Identities=25% Similarity=0.361 Sum_probs=57.2
Q ss_pred hhhccchHHHHHHHHHh-------hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHh
Q 041344 143 ETLRVKDEELQNLARDL-------RARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTKQLETC 215 (236)
Q Consensus 143 EtLrVKDeEl~~Lardl-------raRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~~q~~~~ 215 (236)
+.|+.|..||++|...+ ..=-..|+|+..++.|..|--|+---+.--++++|+.++.|++-|+++++.|....
T Consensus 1069 ~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~~Lee~~~~t 1148 (1930)
T KOG0161|consen 1069 NQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKEELEEQGGTT 1148 (1930)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 35667777777765433 33345788888888888887777777777899999999999999999999996554
Q ss_pred hh
Q 041344 216 VL 217 (236)
Q Consensus 216 ~l 217 (236)
..
T Consensus 1149 ~~ 1150 (1930)
T KOG0161|consen 1149 AA 1150 (1930)
T ss_pred HH
Confidence 43
No 46
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=63.36 E-value=59 Score=28.05 Aligned_cols=134 Identities=18% Similarity=0.262 Sum_probs=81.5
Q ss_pred EEeeeccccceeeeecChhHHHHHHHH------HHHH-----------HHHHHHHHHHhhhcCCCCcccchhHHHHHHhh
Q 041344 38 FYIGTPQKKDYFLCAETPGAARAWVST------LHAA-----------QLVLKAHKEAVNSLSGNGSAKLGTVATVVAAA 100 (236)
Q Consensus 38 fyIgtpqkK~yfLcAETp~aaraWvst------l~At-----------qlVlkAHKEAvnslsgNg~akLGtVAtvVAaA 100 (236)
+|=..||+--|.=..+++...|.|.+- ..-+ ..++.-+.+....|-.||+ +|...-.-
T Consensus 20 vfk~vPQ~PHF~pL~~~~e~~REg~A~Glm~~f~~l~e~v~~l~idd~~~~f~~~~~tl~~LE~~GF----nV~~l~~R- 94 (190)
T PF05266_consen 20 VFKKVPQSPHFSPLQEFKEELREGMAVGLMVTFANLAEKVKKLQIDDSRSSFESLMKTLSELEEHGF----NVKFLRSR- 94 (190)
T ss_pred HHHcCCCCCCChhhhcCcHHhhhHHHHHHHHHHHHHHHHHHHcccCCcHHHHHHHHHHHHHHHHcCC----ccHHHHHH-
Confidence 345679998888888888888877542 1111 2233344555555555665 12221111
Q ss_pred hhhHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCcHHHHHhhhccchHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 041344 101 NSTAQECSKEIEAAMQISLRNALGTMTNRITDGPMDDLSIMKETLRVKDEELQNLARDLRARDSTIRDIADKLSETAEAA 180 (236)
Q Consensus 101 N~ta~Ea~keieaaMqiS~r~alg~~~n~~~~g~~Ddl~imkEtLrVKDeEl~~LardlraRD~tIkeiadkLseTAeAA 180 (236)
|..-+ ++ -|+.+-.+|..+-.++++-+--.+.+..+..|++|-.||.|.-+.+
T Consensus 95 ----------L~kLL--~l---------------k~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~ 147 (190)
T PF05266_consen 95 ----------LNKLL--SL---------------KDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQA 147 (190)
T ss_pred ----------HHHHH--HH---------------HHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 11111 11 3455666677777777776665677888999999999999998876
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041344 181 EAAASAAHTMDEQRRIACAEIERINKESTK 210 (236)
Q Consensus 181 EaAAsaaH~~de~r~~~~sEierL~~~~~~ 210 (236)
... ++......+||.||+.+.+.
T Consensus 148 ~~~-------~~~ke~~~~ei~~lks~~~~ 170 (190)
T PF05266_consen 148 AKL-------KEKKEAKDKEISRLKSEAEA 170 (190)
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 654 44444555777777765543
No 47
>PRK12806 flagellin; Provisional
Probab=62.95 E-value=79 Score=30.84 Aligned_cols=105 Identities=15% Similarity=0.179 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHHH-HhhhccccccCCCCCCCcHHHHHhhhccchHHHHHHHHHhh-------hhhhhHHHHHHHHHHHHH
Q 041344 107 CSKEIEAAMQISL-RNALGTMTNRITDGPMDDLSIMKETLRVKDEELQNLARDLR-------ARDSTIRDIADKLSETAE 178 (236)
Q Consensus 107 a~keieaaMqiS~-r~alg~~~n~~~~g~~Ddl~imkEtLrVKDeEl~~Lardlr-------aRD~tIkeiadkLseTAe 178 (236)
-....+..|.-++ |-+.|...|++.|.|.--...++ |+-.-..|.+-.|.+. .-|..+.|+.+-|...-|
T Consensus 17 ~L~~~~~~l~~~~erLSSG~RIn~asDDpag~aia~~--l~sqi~~l~qa~~N~~dgis~lqtae~aL~~i~~iLqr~re 94 (475)
T PRK12806 17 NLGVSGNMMQTSIQRLSSGLRINSAKDDAAGLAISQR--MTAQIRGMNQAVRNANDGISLAQVAEGAMQETTNILQRMRE 94 (475)
T ss_pred HHHHHHHHHHHHHHHHhccCccCCchhCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444 34667778888765543333333 3333344444444332 246678899999999989
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 041344 179 AAEAAASAAHTMDEQRRIACAEIERINKESTKQLET 214 (236)
Q Consensus 179 AAEaAAsaaH~~de~r~~~~sEierL~~~~~~q~~~ 214 (236)
-+-.|+...++ ++.|..+-.||+.|++++.+-...
T Consensus 95 LavqaaNgt~s-~~dR~ai~~Ei~~L~~~i~~ian~ 129 (475)
T PRK12806 95 LSVQAANSTNN-SSDRASIQSEISQLKSELERIAQN 129 (475)
T ss_pred HHHHhccCCCC-HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888887665 578999999999999998876643
No 48
>PF05659 RPW8: Arabidopsis broad-spectrum mildew resistance protein RPW8; InterPro: IPR008808 This entry represents the RPW8 domain found in several broad-spectrum mildew resistance proteins from Arabidopsis thaliana and other dicots. Plant disease resistance (R) genes control the recognition of specific pathogens and activate subsequent defence responses. The R protein-mediated defences typically involve a rapid, localized necrosis, or hypersensitive response (HR), at the site of infection, and the localised formation of antimicrobial chemicals and proteins that restrict growth of the pathogen. The A. thaliana locus Resistance to Powdery Mildew 8 (RPW8) contains two naturally polymorphic, dominant R genes: RPW8.1 and RPW8.2, which individually control resistance to a broad range of powdery mildew pathogens. They induce localised, salicylic acid-dependent defences similar to those induced by R genes that control specific resistance. Apparently, broad-spectrum resistance mediated by RPW8 uses the same mechanisms as specific resistance [, ]. RPW8.1 and RPW8.2 share similarity with an ~150 amino acid module forming the N terminus of a group of disease resistance proteins, which have a nucleotide-binding site (NBS) and leucine-rich repeats (LRRs) [, ]. The RPW8 domain sequences contain a predicted N-terminal transmembrane (TM) region or possibly a signal peptide, and a coiled-coil (CC) motif [].
Probab=62.75 E-value=23 Score=29.28 Aligned_cols=31 Identities=23% Similarity=0.300 Sum_probs=16.2
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 041344 150 EELQNLARDLRARDSTIRDIADKLSETAEAA 180 (236)
Q Consensus 150 eEl~~LardlraRD~tIkeiadkLseTAeAA 180 (236)
.||.....+...+-..-|.++++|.+|-+.-
T Consensus 16 ~eLlk~v~~~~~k~~~fk~~l~~L~sTl~~i 46 (147)
T PF05659_consen 16 GELLKAVIDASKKSLSFKSILKRLESTLESI 46 (147)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Confidence 3444555555555555555555555555443
No 49
>cd01237 Unc112 Unc-112 pleckstrin homology (PH) domain. Unc-112 pleckstrin homology (PH) domain. Unc-112 and related proteins contain two FERM domains with a PH domain between them. Both the PH and FERM domains have a PH-like fold. The FERM domains are likely responsible for the role of Unc-112 in organizing beta-integrin. The specific role of the Unc-112 PH domain is not known, but it is predicted to be involved in mediating membrane interactions. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=61.36 E-value=42 Score=27.14 Aligned_cols=61 Identities=10% Similarity=0.117 Sum_probs=47.3
Q ss_pred CCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeecc---ccceeeeecChhHHHHHHHHHHHH
Q 041344 4 NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQ---KKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 4 ~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpq---kK~yfLcAETp~aaraWvstl~At 68 (236)
.|....|+|.+.--.-+-...+|+-+.. =||=+.+|. .++|||.+||..--..|++-+|=|
T Consensus 39 ee~~~~p~i~lnl~gcev~~dv~~~~~k----f~I~l~~ps~~~~r~y~l~cdsEeqya~Wmaa~rla 102 (106)
T cd01237 39 EDSNGAPIGQLNLKGCEVTPDVNVAQQK----FHIKLLIPTAEGMNEVWLRCDNEKQYAKWMAACRLA 102 (106)
T ss_pred hhcCCCCeEEEecCceEEcccccccccc----eEEEEecCCccCCeEEEEECCCHHHHHHHHHHHHHh
Confidence 4556788888887777777788886652 467777775 268999999999999999988644
No 50
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=60.68 E-value=70 Score=24.06 Aligned_cols=68 Identities=13% Similarity=0.184 Sum_probs=48.6
Q ss_pred cchHHHHHHHHHhhhhhhhHHH---HHHHHHHHHH-HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 041344 147 VKDEELQNLARDLRARDSTIRD---IADKLSETAE-AAEAAASAAHTMDEQRRIACAEIERINKESTKQLET 214 (236)
Q Consensus 147 VKDeEl~~LardlraRD~tIke---iadkLseTAe-AAEaAAsaaH~~de~r~~~~sEierL~~~~~~q~~~ 214 (236)
..=+++++|.+++..+...+.+ .|++|.+... .+..-...+..+...+..++..++.-+..++..++.
T Consensus 37 ~~l~~~~~~~~e~~~~~~~~~~l~~~~~~L~~~~~~~~~~i~~~~~~l~~~w~~l~~~~~~r~~~L~~~~~~ 108 (213)
T cd00176 37 ALLKKHEALEAELAAHEERVEALNELGEQLIEEGHPDAEEIQERLEELNQRWEELRELAEERRQRLEEALDL 108 (213)
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446788888888777665554 4566666553 455666777888899999999888888777776543
No 51
>cd01218 PH_phafin2 Phafin2 Pleckstrin Homology (PH) domain. Phafin2 Pleckstrin Homology (PH) domain. Phafin contains a PH domain and a FYVE domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, as well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=58.82 E-value=18 Score=28.38 Aligned_cols=32 Identities=25% Similarity=0.470 Sum_probs=27.9
Q ss_pred eeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344 36 CCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 36 CCfyIgtpqkK~yfLcAETp~aaraWvstl~At 68 (236)
++|-|-+|+| .+.++|+|+..=+.|+..|.-|
T Consensus 66 n~f~I~~~~k-Sf~v~A~s~~eK~eWl~~i~~a 97 (104)
T cd01218 66 NGWIIKTPTK-SFAVYAATETEKREWMLHINKC 97 (104)
T ss_pred ceEEEecCCe-EEEEEcCCHHHHHHHHHHHHHH
Confidence 7899999864 7889999999999999998543
No 52
>PHA02591 hypothetical protein; Provisional
Probab=57.40 E-value=9.4 Score=30.29 Aligned_cols=31 Identities=19% Similarity=0.378 Sum_probs=25.5
Q ss_pred hHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 041344 149 DEELQNLARDLRARDSTIRDIADKLSETAEA 179 (236)
Q Consensus 149 DeEl~~LardlraRD~tIkeiadkLseTAeA 179 (236)
.+++.+||++|+.+--++.+||+.|-=+-++
T Consensus 45 ~dd~~~vA~eL~eqGlSqeqIA~~LGVsqet 75 (83)
T PHA02591 45 EDDLISVTHELARKGFTVEKIASLLGVSVRK 75 (83)
T ss_pred cchHHHHHHHHHHcCCCHHHHHHHhCCCHHH
Confidence 3567899999999999999999998654443
No 53
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=57.04 E-value=95 Score=26.63 Aligned_cols=15 Identities=33% Similarity=0.727 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHH
Q 041344 194 RRIACAEIERINKES 208 (236)
Q Consensus 194 r~~~~sEierL~~~~ 208 (236)
+.-.|.|+++++++.
T Consensus 132 Y~~~c~e~e~~~~~~ 146 (261)
T cd07648 132 YHARCLELERLRREN 146 (261)
T ss_pred HHHHHHHHHHHHHcc
Confidence 345677777776654
No 54
>PRK08869 flagellin; Reviewed
Probab=56.89 E-value=1.4e+02 Score=27.88 Aligned_cols=103 Identities=17% Similarity=0.215 Sum_probs=69.2
Q ss_pred HHHHHHHHHHH-HhhhccccccCCCCCCCcHHHHHhhhccchHHHHHHHHHhh-------hhhhhHHHHHHHHHHHHHHH
Q 041344 109 KEIEAAMQISL-RNALGTMTNRITDGPMDDLSIMKETLRVKDEELQNLARDLR-------ARDSTIRDIADKLSETAEAA 180 (236)
Q Consensus 109 keieaaMqiS~-r~alg~~~n~~~~g~~Ddl~imkEtLrVKDeEl~~Lardlr-------aRD~tIkeiadkLseTAeAA 180 (236)
...+..|.-++ |-+.|...|++.|.|.--..+ +.||-.-..+.+..+.+. .-|..+.+|.+-|...-|-+
T Consensus 18 ~~~~~~l~~~~~qlSSG~rIn~asDDpa~~ai~--~~l~~~~~~~~q~~~N~~~~~s~lq~ae~aL~~i~~~L~r~reLa 95 (376)
T PRK08869 18 NGATSALSQSMERLSSGKRINSAKDDAAGLQIS--NRLTTQIRGLDVAVRNANDGISIAQTAEGAMNETTNILQRMRDLS 95 (376)
T ss_pred HHHHHHHHHHHHHHhccCcCCCcccCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333 346677778887766443333 445555555555555543 34566889999999988888
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 041344 181 EAAASAAHTMDEQRRIACAEIERINKESTKQLET 214 (236)
Q Consensus 181 EaAAsaaH~~de~r~~~~sEierL~~~~~~q~~~ 214 (236)
..|+....+ |+.|..+..|++.|+.++..-...
T Consensus 96 vqa~Ngt~s-~~dr~ai~~E~~~L~~~i~~ian~ 128 (376)
T PRK08869 96 LQSANGSNS-ASDRQALQEEVTALNDELNRIAET 128 (376)
T ss_pred HHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888877654 577999999999999998876653
No 55
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=56.42 E-value=58 Score=29.35 Aligned_cols=75 Identities=17% Similarity=0.336 Sum_probs=40.5
Q ss_pred CCCCCCcHHHHHhhhccchHHHH-------HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 041344 131 TDGPMDDLSIMKETLRVKDEELQ-------NLARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIER 203 (236)
Q Consensus 131 ~~g~~Ddl~imkEtLrVKDeEl~-------~LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEier 203 (236)
.+.+-+.+..+++.|.--+.+|. +|-..+..-+..|.++..+.++.-+.-..+ -...++.|..-..||.+
T Consensus 204 ~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~---~~~~~~~r~~t~~Ev~~ 280 (325)
T PF08317_consen 204 ESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEA---EKIREECRGWTRSEVKR 280 (325)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCCCHHHHHH
Confidence 34445666666666665555555 445555555555555555555544333222 22233445556677777
Q ss_pred HHHHH
Q 041344 204 INKES 208 (236)
Q Consensus 204 L~~~~ 208 (236)
|+...
T Consensus 281 Lk~~~ 285 (325)
T PF08317_consen 281 LKAKV 285 (325)
T ss_pred HHHHH
Confidence 77664
No 56
>PRK06819 flagellin; Validated
Probab=56.29 E-value=1.7e+02 Score=27.88 Aligned_cols=102 Identities=14% Similarity=0.199 Sum_probs=71.8
Q ss_pred HHHHHHHHHH-HhhhccccccCCCCCCCcHHHHHhhhccchHHHHHHHHH-------hhhhhhhHHHHHHHHHHHHHHHH
Q 041344 110 EIEAAMQISL-RNALGTMTNRITDGPMDDLSIMKETLRVKDEELQNLARD-------LRARDSTIRDIADKLSETAEAAE 181 (236)
Q Consensus 110 eieaaMqiS~-r~alg~~~n~~~~g~~Ddl~imkEtLrVKDeEl~~Lard-------lraRD~tIkeiadkLseTAeAAE 181 (236)
..+..|.-++ |-+.|...|++.|.|.--. .-+.||-.-..+.+-.+. |..-|..+.+|.+-|+..-|-+.
T Consensus 20 ~~~~~l~~~~erLSSGkRIn~asDDpag~a--ia~~l~aqi~~l~qa~~N~~dgis~Lqtae~aL~~i~~iLqR~reLav 97 (376)
T PRK06819 20 KSQSSLGTAIERLSSGLRINSAKDDAAGQA--IANRFTSNIKGLTQAARNANDGISIAQTTEGALNEINNNLQRVRELTV 97 (376)
T ss_pred HHHHHHHHHHHHHhccCccCCcccCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444433 4477888899988666222 356666665666665554 34457888999999999888888
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 041344 182 AAASAAHTMDEQRRIACAEIERINKESTKQLET 214 (236)
Q Consensus 182 aAAsaaH~~de~r~~~~sEierL~~~~~~q~~~ 214 (236)
.|+.... -|+.|..+..||+.|++++..-...
T Consensus 98 qAaNgT~-s~~dR~ai~~Ei~qL~~qI~~ian~ 129 (376)
T PRK06819 98 QAQNGSN-SSSDLDSIQDEISQRLAEIDRVSDQ 129 (376)
T ss_pred HhccCCC-CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8877544 4689999999999999998876553
No 57
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=53.20 E-value=1.5e+02 Score=30.76 Aligned_cols=111 Identities=18% Similarity=0.316 Sum_probs=76.2
Q ss_pred ccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccccccCCCCCCCcHHHHHhhhccchHHHHHHHHHhhhhhhhHH
Q 041344 88 AKLGTVATVVAAANSTAQECSKEIEAAMQISLRNALGTMTNRITDGPMDDLSIMKETLRVKDEELQNLARDLRARDSTIR 167 (236)
Q Consensus 88 akLGtVAtvVAaAN~ta~Ea~keieaaMqiS~r~alg~~~n~~~~g~~Ddl~imkEtLrVKDeEl~~LardlraRD~tIk 167 (236)
+-++-|-+=++-||..+..+=.+++. +|..+..-+-....+..||+.-...+|--||.|+.+|..||..=.+-
T Consensus 235 aev~lim~eLe~aq~ri~~lE~e~e~-----L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S-- 307 (629)
T KOG0963|consen 235 AEVSLIMTELEDAQQRIVFLEREVEQ-----LREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEAS-- 307 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHH--
Confidence 34455555667777777777777643 44444444434445567888888888989999999999998653322
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 041344 168 DIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTKQLE 213 (236)
Q Consensus 168 eiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~~q~~ 213 (236)
+.+.-|.-+...-.+..+=....+|||.|++.++.+.+
T Consensus 308 --------~~~e~e~~~~qI~~le~~l~~~~~~leel~~kL~~~sD 345 (629)
T KOG0963|consen 308 --------LVEEREKHKAQISALEKELKAKISELEELKEKLNSRSD 345 (629)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 22333444555566777888889999999999998754
No 58
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=52.49 E-value=1.2e+02 Score=24.42 Aligned_cols=69 Identities=22% Similarity=0.358 Sum_probs=55.7
Q ss_pred cHHHHHhhhccchHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 041344 137 DLSIMKETLRVKDEELQNLARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERIN 205 (236)
Q Consensus 137 dl~imkEtLrVKDeEl~~LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~ 205 (236)
++.-....|..-++|+.++-+.+..-.+-+.++-+...+--+.-+...+-....|+.+....+|+.+++
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556667788888899999998888888888888777777767777777788888888888888888887
No 59
>PRK12808 flagellin; Provisional
Probab=52.42 E-value=1.8e+02 Score=29.14 Aligned_cols=107 Identities=21% Similarity=0.265 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHH-HhhhccccccCCCCCCCcHHHHHhhhccchHHHHHHH-------HHhhhhhhhHHHHHHHHHHH
Q 041344 105 QECSKEIEAAMQISL-RNALGTMTNRITDGPMDDLSIMKETLRVKDEELQNLA-------RDLRARDSTIRDIADKLSET 176 (236)
Q Consensus 105 ~Ea~keieaaMqiS~-r~alg~~~n~~~~g~~Ddl~imkEtLrVKDeEl~~La-------rdlraRD~tIkeiadkLseT 176 (236)
+.-....+..|.-++ |-+.|...|++.|.|.--.+. +.||-.-..|.|.. .-+..-|..+.+|-+.|+..
T Consensus 13 l~nL~~~qs~LsksqeqLSSGkRINsASDDPAGlAIA--~rLrsqiagL~Qa~rNi~dgiS~LQTAEgAL~eIsdILQRm 90 (476)
T PRK12808 13 QEYMRQNQAKMSNAMDRLSSGKRINNASDDAAGLAIA--TRMRARESGLGVAANNTQDGMSLIRTADSAMNSVSNILLRM 90 (476)
T ss_pred HHHHHHHHHHHHHHHHHHhccCccCCcccCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455555444 446777788888766554333 33443334444443 34567788899999999999
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 041344 177 AEAAEAAASAAHTMDEQRRIACAEIERINKESTKQLET 214 (236)
Q Consensus 177 AeAAEaAAsaaH~~de~r~~~~sEierL~~~~~~q~~~ 214 (236)
-|-+..|+....+ ++.|..+-.||+.|+.++.+-...
T Consensus 91 RELAVQAANGT~S-~~DRaAIq~EI~qLleeI~~IAnn 127 (476)
T PRK12808 91 RDIANQSANGTNT-DKNQAALQKEFAELQKQITYIADN 127 (476)
T ss_pred HHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999888887766 467999999999999999877643
No 60
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=51.60 E-value=64 Score=29.90 Aligned_cols=63 Identities=16% Similarity=0.168 Sum_probs=38.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhc
Q 041344 165 TIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTKQLETCVLKVNFSQLFCG 227 (236)
Q Consensus 165 tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~~q~~~~~l~lk~~~~~~~ 227 (236)
.+++|-+.|.|.-|-=.-|--+---.|-.+..+.-+||-|+..++...+.....-|+++.||+
T Consensus 78 s~r~lk~~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~ 140 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIR 140 (302)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666555555544444566666666666666666666666666666666666655
No 61
>PF00669 Flagellin_N: Bacterial flagellin N-terminal helical region; InterPro: IPR001029 Bacterial flagella are responsible for motility and chemotaxis []. They comprise a basal body, a hook and a filament, the latter accounting for 98% of the mass []. Flagellin is the subunit protein that polymerises to form the flagellae [], the subunits being transported through the centre of the filament to the tip, where they then polymerise []. Both the N- and C- termini of the subunit protein, which are alpha-helical in structure [], are required to mediate polymerisation. Although no export or assembly consensus sequences have been identified, Ala, Val, Leu, Ile, Gly, Ser, Thr, Asn, Gln and Asp tend to make up around 90% of the sequence, Cys and Trp being absent []. This entry represents the N and C termini that come together to form the D0 and D1 structural domains []. These domains are responsible for flagellin's ability to polymerise into a filament. ; GO: 0005198 structural molecule activity, 0001539 ciliary or flagellar motility, 0009288 bacterial-type flagellum; PDB: 1IO1_A 1UCU_A 3A5X_A 3V47_C 2D4X_A 3PWX_B 3K8V_A 2ZBI_B 3K8W_A.
Probab=50.77 E-value=1.1e+02 Score=23.26 Aligned_cols=90 Identities=21% Similarity=0.352 Sum_probs=57.8
Q ss_pred HHHHHhhhccccccCCCCCCCcHHHHHhhhccch--HHHH-------HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Q 041344 116 QISLRNALGTMTNRITDGPMDDLSIMKETLRVKD--EELQ-------NLARDLRARDSTIRDIADKLSETAEAAEAAASA 186 (236)
Q Consensus 116 qiS~r~alg~~~n~~~~g~~Ddl~imkEtLrVKD--eEl~-------~LardlraRD~tIkeiadkLseTAeAAEaAAsa 186 (236)
+..-+-+.|...|.+.|.|.+-..+ ++.+. ..+. ....-|..-|..+.+|.+-|...-+.+..+++.
T Consensus 23 ~~~~qlsTG~k~~~~sd~p~~~~~~----~~l~~~~~~~~~~~~n~~~~~~~l~~~~~al~~i~~~l~~~~~~~~~~~~~ 98 (139)
T PF00669_consen 23 KLQEQLSTGKKINSPSDDPAAASRA----LSLRSQISRLEQYQRNIDDAKSRLSTAETALSSISDILQRARELAVQAANG 98 (139)
T ss_dssp HHHHHHHTS--TTTCGCSHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred HHHHHHHcCCCcccHHHhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4444556666666666555444333 33322 2222 233345566778888999999888888888888
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH
Q 041344 187 AHTMDEQRRIACAEIERINKESTK 210 (236)
Q Consensus 187 aH~~de~r~~~~sEierL~~~~~~ 210 (236)
... ++.|+.+-.|++.|..++..
T Consensus 99 ~~~-~~~~~~~~~el~~l~~~l~~ 121 (139)
T PF00669_consen 99 TNS-DEDRQAIAAELQQLLDQLNQ 121 (139)
T ss_dssp TS--HHHHHHHHHHHHHHHHHHHH
T ss_pred ccc-chhHHhHHHHHHHHHHHHHH
Confidence 774 44899999999999888763
No 62
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=50.21 E-value=1.5e+02 Score=28.01 Aligned_cols=65 Identities=20% Similarity=0.313 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH------------HhHhhhhhh----hhhhhhcccc
Q 041344 167 RDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTKQ------------LETCVLKVN----FSQLFCGLLH 230 (236)
Q Consensus 167 keiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~~q------------~~~~~l~lk----~~~~~~~~~~ 230 (236)
+...++|++.-+.-..+...+-.+-.+-..+..|+|+.+++++.+ +++++-||| +..+++|++-
T Consensus 276 r~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMdvrIGVle 355 (359)
T PF10498_consen 276 RSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMDVRIGVLE 355 (359)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhheeh
Confidence 345666777766666666666666666677889999999998864 566666665 4568888875
Q ss_pred C
Q 041344 231 N 231 (236)
Q Consensus 231 ~ 231 (236)
+
T Consensus 356 h 356 (359)
T PF10498_consen 356 H 356 (359)
T ss_pred h
Confidence 4
No 63
>PRK13588 flagellin B; Provisional
Probab=49.83 E-value=2e+02 Score=28.52 Aligned_cols=107 Identities=21% Similarity=0.201 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHH-hhhccccccCCCCCCCcHHHHHhhhccchHHHHHHHH-------HhhhhhhhHHHHHHHHHHH
Q 041344 105 QECSKEIEAAMQISLR-NALGTMTNRITDGPMDDLSIMKETLRVKDEELQNLAR-------DLRARDSTIRDIADKLSET 176 (236)
Q Consensus 105 ~Ea~keieaaMqiS~r-~alg~~~n~~~~g~~Ddl~imkEtLrVKDeEl~~Lar-------dlraRD~tIkeiadkLseT 176 (236)
+.-.+..+..|.-++. -+.|...|+..|.|.--.++++ ||-.-.-|.|..| -|..-|..+.+|-+-|+..
T Consensus 15 ~~~L~~~~~~l~~~~erLSSG~RIn~AsDDpag~aia~~--l~sqi~~l~Qa~~N~~dgis~lqtae~aL~~i~~iLqri 92 (514)
T PRK13588 15 HAVGVQNNRDLSSSLEKLSSGLRINKAADDASGMAIADS--LRSQSANLGQAIRNANDAIGMVQTADKAMDEQIKILDTI 92 (514)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCccCCcccCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445544443 3677778888775554444333 3333334444433 3455678889999999999
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 041344 177 AEAAEAAASAAHTMDEQRRIACAEIERINKESTKQLET 214 (236)
Q Consensus 177 AeAAEaAAsaaH~~de~r~~~~sEierL~~~~~~q~~~ 214 (236)
-|-+..|+...++ ++.|..+-.||+.|++++.+-...
T Consensus 93 reLavqAaNgt~s-~~dR~aiq~Ei~qL~~eI~~iant 129 (514)
T PRK13588 93 KTKAVQAAQDGQT-LESRRALQSDIQRLLEELDNIANT 129 (514)
T ss_pred HHHHHHhhcCCCC-HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9988888887765 568999999999999998876654
No 64
>PRK08870 flgL flagellar hook-associated protein FlgL; Reviewed
Probab=49.80 E-value=2.1e+02 Score=26.26 Aligned_cols=90 Identities=16% Similarity=0.258 Sum_probs=60.5
Q ss_pred HhhhccccccCCCCCCCcHHHHHhhhccch--HHHHHH-------HHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 041344 120 RNALGTMTNRITDGPMDDLSIMKETLRVKD--EELQNL-------ARDLRARDSTIRDIADKLSETAEAAEAAASAAHTM 190 (236)
Q Consensus 120 r~alg~~~n~~~~g~~Ddl~imkEtLrVKD--eEl~~L-------ardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~ 190 (236)
+-+.|...|++.|.|.+-.. -++.+. ..+.+. ..-|..-|..+..|.+.|.+.-|.+..|+....+
T Consensus 29 qlsTGkki~~~sDdp~~~~~----~~~l~~~~~~~~qy~~n~~~~~~~l~~~~~~L~~i~~~l~~~r~~~v~a~n~t~s- 103 (404)
T PRK08870 29 QLSSGKKLLTPSDDPVAAAQ----AVNLSQQSALLDQYTKNINLARNRLQQEESTLGSVEDLLQRARELVVQAGNGSLS- 103 (404)
T ss_pred HhhccCccCChhhCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-
Confidence 34556666766655544444 334433 333333 3345566778888888888888888877776554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Q 041344 191 DEQRRIACAEIERINKESTKQLET 214 (236)
Q Consensus 191 de~r~~~~sEierL~~~~~~q~~~ 214 (236)
+++|..+-.|++.|++++......
T Consensus 104 ~~~r~aia~e~~~l~~~l~~~~Nt 127 (404)
T PRK08870 104 DSDRQAIATELQGLRDQLLNLANS 127 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 788999999999999998776654
No 65
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=49.53 E-value=5.9 Score=33.12 Aligned_cols=32 Identities=22% Similarity=0.537 Sum_probs=24.9
Q ss_pred ccCCCCCccceeEEeeeccccceeeeecChhHH
Q 041344 26 NFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAA 58 (236)
Q Consensus 26 Nf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aa 58 (236)
+|..+. -.-|||-||.|...+++||..+....
T Consensus 109 ~l~~L~-~~~CrwPiGdp~~~~f~FCG~~~~~g 140 (162)
T PF07750_consen 109 TLLELT-EGTCRWPIGDPGEPDFHFCGAPTQPG 140 (162)
T ss_pred ChhhCC-cCCccCcCCCCCCCCccccCCcCCCC
Confidence 455553 36899999999999999998766543
No 66
>PRK08027 flgL flagellar hook-associated protein FlgL; Reviewed
Probab=49.21 E-value=1.7e+02 Score=26.32 Aligned_cols=90 Identities=10% Similarity=0.182 Sum_probs=58.3
Q ss_pred HhhhccccccCCCCCCCcHHHHHhhhccch--HHHHHHH---HHh----hhhhhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 041344 120 RNALGTMTNRITDGPMDDLSIMKETLRVKD--EELQNLA---RDL----RARDSTIRDIADKLSETAEAAEAAASAAHTM 190 (236)
Q Consensus 120 r~alg~~~n~~~~g~~Ddl~imkEtLrVKD--eEl~~La---rdl----raRD~tIkeiadkLseTAeAAEaAAsaaH~~ 190 (236)
+-+.|...|++.|.|. .+...++.+. ..+.+.. .+. ..-|..+..+.+-|+..-|-+..|++..+ -
T Consensus 29 qlsTGkri~~psDDP~----~~~~~~~l~~~~~~~~qy~~n~~~a~~~l~~~e~~L~~i~~~l~r~rel~v~a~ngt~-s 103 (317)
T PRK08027 29 QMSTGKRVVNPSDDPI----AASQAVVLSQAQAQNSQYTLARTFATQKVSLEESVLSQVTTAIQNAQEKIVYAGNGTL-S 103 (317)
T ss_pred HHhccCccCChhhCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-C
Confidence 3466777777766444 3444433332 1222322 222 23377788888888888888887777654 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH
Q 041344 191 DEQRRIACAEIERINKESTKQLET 214 (236)
Q Consensus 191 de~r~~~~sEierL~~~~~~q~~~ 214 (236)
++.|..+-.|++.|++++-.....
T Consensus 104 ~~dr~aia~Ei~~l~~~l~~~aNt 127 (317)
T PRK08027 104 DDDRASLATDLQGLRDQLLNLANT 127 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 688999999999999988776553
No 67
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=49.02 E-value=68 Score=30.73 Aligned_cols=47 Identities=23% Similarity=0.249 Sum_probs=26.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041344 164 STIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTK 210 (236)
Q Consensus 164 ~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~~ 210 (236)
++|++|+-+++.+-.--+.+||---..++.-..-..|+||+||.+++
T Consensus 112 ~aIq~i~~~~q~~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~ 158 (338)
T KOG3647|consen 112 SAIQAIQVRLQSSRAQLNNVASDEAALGSKIERRKAELERTRKRLEA 158 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666555666665555554333334577777766654
No 68
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=48.99 E-value=87 Score=23.33 Aligned_cols=57 Identities=19% Similarity=0.323 Sum_probs=40.0
Q ss_pred cchHHHHHH--HHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 041344 147 VKDEELQNL--ARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKEST 209 (236)
Q Consensus 147 VKDeEl~~L--ardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~ 209 (236)
..++++..| ...+|.-.-+|++|..-+.... ......+++++..+-.|+++|+...+
T Consensus 39 y~~~di~~l~~i~~lr~~g~~l~~i~~~~~~~~------~~~~~~l~~~~~~l~~~i~~l~~~~~ 97 (103)
T cd01106 39 YTEEDLERLQQILFLKELGFSLKEIKELLKDPS------EDLLEALREQKELLEEKKERLDKLIK 97 (103)
T ss_pred eCHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCc------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555544 4567888899999988876553 33455688888888888888866543
No 69
>cd01262 PH_PDK1 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. 3-Phosphoinositide dependent protein kinase 1 (PDK1) pleckstrin homology (PH) domain. PDK1 contains an N-terminal serine/threonine kinase domain followed by a PH domain. Following binding of the PH domain to PtdIns(3,4,5)P3 and PtdIns(3,4)P2, PDK1 activates kinases such as Akt (PKB). PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=47.89 E-value=43 Score=26.47 Aligned_cols=52 Identities=25% Similarity=0.500 Sum_probs=33.9
Q ss_pred CCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344 6 PTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 6 ~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At 68 (236)
...||.|-... +.+.+..+|++ .|+|-||.+ +|+|+ +--+-|-.|+..+-.+
T Consensus 36 ~~~KgeIp~s~-~~l~v~~~~~~--------~F~I~Tp~r-ty~le-D~~~~a~~W~~~I~~~ 87 (89)
T cd01262 36 KVVKGEIPWSD-VELRVEVKNSS--------HFFVHTPNK-VYSFE-DPKGRASQWKKAIEDL 87 (89)
T ss_pred CeEEeEecccc-cceEEEEecCc--------cEEEECCCc-eEEEE-CCCCCHHHHHHHHHHH
Confidence 34577777766 23446666664 699999975 55553 2236788899877544
No 70
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=47.43 E-value=1.9e+02 Score=27.49 Aligned_cols=56 Identities=18% Similarity=0.291 Sum_probs=37.2
Q ss_pred hHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 041344 149 DEELQNLARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERI 204 (236)
Q Consensus 149 DeEl~~LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL 204 (236)
.+|...|..|-+.=..+-++.-.||.|..+.-...+++.-.--++=+.+...+.++
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~L~~sLk~~ 58 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKELKKSLKRC 58 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36777777777777778888888888888877777665433333333444445555
No 71
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=46.34 E-value=1.1e+02 Score=21.98 Aligned_cols=78 Identities=18% Similarity=0.241 Sum_probs=43.6
Q ss_pred cHHHHHhhhccchHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH-hhhhhhHHHHHHHHHHHHHHHHHHHHHHhHh
Q 041344 137 DLSIMKETLRVKDEELQNLARDLRARDSTIRDIADKLSETAEAAEAAA-SAAHTMDEQRRIACAEIERINKESTKQLETC 215 (236)
Q Consensus 137 dl~imkEtLrVKDeEl~~LardlraRD~tIkeiadkLseTAeAAEaAA-saaH~~de~r~~~~sEierL~~~~~~q~~~~ 215 (236)
.+.-+.++|+-|-+++.+..+.|...-..+++=++ .+-+--.+.. .-.-.+++++..++++|++.+++....+..-
T Consensus 4 ~L~~~l~~l~~~~~~~~~~~~~l~~~~~~l~~~~~---~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q 80 (127)
T smart00502 4 ALEELLTKLRKKAAELEDALKQLISIIQEVEENAA---DVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQ 80 (127)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666677777777766666554333333222 2222222222 2333578888888999988886665555444
Q ss_pred hh
Q 041344 216 VL 217 (236)
Q Consensus 216 ~l 217 (236)
..
T Consensus 81 ~~ 82 (127)
T smart00502 81 LE 82 (127)
T ss_pred HH
Confidence 33
No 72
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=46.10 E-value=1.2e+02 Score=25.07 Aligned_cols=21 Identities=33% Similarity=0.515 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041344 191 DEQRRIACAEIERINKESTKQ 211 (236)
Q Consensus 191 de~r~~~~sEierL~~~~~~q 211 (236)
++.-...-.||+.|++++++.
T Consensus 153 ~~~~~~~~~ei~~lk~el~~~ 173 (192)
T PF05529_consen 153 KEENKKLSEEIEKLKKELEKK 173 (192)
T ss_pred hhhhhhhHHHHHHHHHHHHHH
Confidence 344456678888888888773
No 73
>PRK12584 flagellin A; Reviewed
Probab=45.82 E-value=2.7e+02 Score=27.40 Aligned_cols=108 Identities=20% Similarity=0.197 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHH-HhhhccccccCCCCCCCcHHHHHhhhccchHHHHHHHHH-------hhhhhhhHHHHHHHHHH
Q 041344 104 AQECSKEIEAAMQISL-RNALGTMTNRITDGPMDDLSIMKETLRVKDEELQNLARD-------LRARDSTIRDIADKLSE 175 (236)
Q Consensus 104 a~Ea~keieaaMqiS~-r~alg~~~n~~~~g~~Ddl~imkEtLrVKDeEl~~Lard-------lraRD~tIkeiadkLse 175 (236)
++.-....+..|.-++ |-+.|...|++.|.|.--...+ .||-.-..|.|..|. |..-|..+.|+-+-|..
T Consensus 14 a~~~l~~~~~~l~~~~~qLSSG~rIn~asDDpag~aia~--~l~~~i~~l~q~~~N~~~g~s~lqtae~aL~~i~~~Lqr 91 (510)
T PRK12584 14 AHVQSALTQNALKTSLEKLSSGLRINKAADDASGMTIAD--SLRSQASSLGQAIANTNDGMGIIQVADKAMDEQLKILDT 91 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCccCChhhCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444433 4477777888876554433332 233333344443333 44567778899999998
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 041344 176 TAEAAEAAASAAHTMDEQRRIACAEIERINKESTKQLET 214 (236)
Q Consensus 176 TAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~~q~~~ 214 (236)
.-|-+..|+...++ ++.|..+..||+.|+.++.+-...
T Consensus 92 ~relavqaangt~s-~~dR~ai~~Ei~~L~~ei~~ian~ 129 (510)
T PRK12584 92 IKVKATQAAQDGQT-TESRKAIQSDIVRLIQGLDNIGNT 129 (510)
T ss_pred HHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888888776664 578999999999999999876664
No 74
>PRK12807 flagellin; Provisional
Probab=45.75 E-value=1.2e+02 Score=26.76 Aligned_cols=92 Identities=14% Similarity=0.223 Sum_probs=64.1
Q ss_pred HhhhccccccCCCCCCCcHHHHHhhhccchHHHHHHHH-------HhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 041344 120 RNALGTMTNRITDGPMDDLSIMKETLRVKDEELQNLAR-------DLRARDSTIRDIADKLSETAEAAEAAASAAHTMDE 192 (236)
Q Consensus 120 r~alg~~~n~~~~g~~Ddl~imkEtLrVKDeEl~~Lar-------dlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de 192 (236)
+-+.|...|++.|.|.--..++ .||-.-..+.+..+ -|..-|..+.++.+-|...-|-+..|+....+ ++
T Consensus 29 qlssG~ri~~~sDDp~~~~~~~--~l~~~~~~~~q~~~N~~~~~s~l~~ad~~L~~i~~~l~r~rel~v~a~ngt~s-~~ 105 (287)
T PRK12807 29 RLSSGKRINSAADDAAGLAIAT--RMRARQSGLEKASQNTQDGMSLIRTAESAMNSVSNILTRMRDIAVQSSNGTNT-AE 105 (287)
T ss_pred HHhccCCcCChhhCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC-HH
Confidence 3466777788776554443332 34433344444433 45567888999999999988888888776554 57
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 041344 193 QRRIACAEIERINKESTKQLET 214 (236)
Q Consensus 193 ~r~~~~sEierL~~~~~~q~~~ 214 (236)
+|..+..||+.|++++..-...
T Consensus 106 dr~ai~~Ei~~l~~~i~~~a~~ 127 (287)
T PRK12807 106 NQSALQKEFAELQEQIDYIAKN 127 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 7999999999999998876643
No 75
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=45.66 E-value=5.2e+02 Score=29.67 Aligned_cols=143 Identities=21% Similarity=0.251 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCcccchhHHHHHHhhhhhHHHHHHHHHHHHHHHHHhh-------------h
Q 041344 57 AARAWVSTLHAAQLVLKAHKEAVNSLSGNGSAKLGTVATVVAAANSTAQECSKEIEAAMQISLRNA-------------L 123 (236)
Q Consensus 57 aaraWvstl~AtqlVlkAHKEAvnslsgNg~akLGtVAtvVAaAN~ta~Ea~keieaaMqiS~r~a-------------l 123 (236)
|-.||.---+|.+-++.+-+||=..|+ .|..|---|.||-..-|++...+=+.. +
T Consensus 1410 A~~A~~~A~~~~~~l~~~~ae~eq~~~------------~v~ea~~~aseA~~~Aq~~~~~a~as~~q~~~s~~el~~Li 1477 (1758)
T KOG0994|consen 1410 AGGALLMAGDADTQLRSKLAEAEQTLS------------MVREAKLSASEAQQSAQRALEQANASRSQMEESNRELRNLI 1477 (1758)
T ss_pred cchHHHHhhhHHHHHHHHHHHHHHHHH------------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777777777788888888755443 555555555555444444433322221 1
Q ss_pred ccccccCCCCC--CCcHHHHH-hh----hccchHHHHHHHHHhhhhhhhHHHH-------------HHHHHHHHHHHHHH
Q 041344 124 GTMTNRITDGP--MDDLSIMK-ET----LRVKDEELQNLARDLRARDSTIRDI-------------ADKLSETAEAAEAA 183 (236)
Q Consensus 124 g~~~n~~~~g~--~Ddl~imk-Et----LrVKDeEl~~LardlraRD~tIkei-------------adkLseTAeAAEaA 183 (236)
-...|-++... .|++.-+. |+ |....|+|++|..+|+.|-+.|+.+ |+.|.+-|+.|.+-
T Consensus 1478 ~~v~~Flt~~~adp~si~~vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~ 1557 (1758)
T KOG0994|consen 1478 QQVRDFLTQPDADPDSIEEVAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSR 1557 (1758)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhH
Confidence 11113333222 33333332 23 4567899999999999987666544 45555555444433
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 041344 184 ASAAHTMDEQRRIACAEIERINKESTKQ 211 (236)
Q Consensus 184 AsaaH~~de~r~~~~sEierL~~~~~~q 211 (236)
|-.+-.--+.=++++.|.++....-++.
T Consensus 1558 A~~v~~~ae~V~eaL~~Ad~Aq~~a~~a 1585 (1758)
T KOG0994|consen 1558 AEDVKGQAEDVVEALEEADVAQGEAQDA 1585 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322222233344455555444333333
No 76
>PRK12802 flagellin; Provisional
Probab=45.41 E-value=2.1e+02 Score=25.04 Aligned_cols=92 Identities=12% Similarity=0.108 Sum_probs=62.5
Q ss_pred HhhhccccccCCCCCCCcHHHHHhhhccchHHHHHHHHH-------hhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 041344 120 RNALGTMTNRITDGPMDDLSIMKETLRVKDEELQNLARD-------LRARDSTIRDIADKLSETAEAAEAAASAAHTMDE 192 (236)
Q Consensus 120 r~alg~~~n~~~~g~~Ddl~imkEtLrVKDeEl~~Lard-------lraRD~tIkeiadkLseTAeAAEaAAsaaH~~de 192 (236)
+-+.|...|++.|.|.--..++ .++-.-..+.+-.++ |..-|..+.+|.+-|...-|-+-.|+....+ ++
T Consensus 31 qlstG~ri~~~sDDp~~~~~~~--~~~~~~~~~~q~~~n~~~~~s~l~~ad~~l~~i~~~l~r~rel~v~a~ngt~s-~~ 107 (282)
T PRK12802 31 RLSSGLKINSAKDDAAGLQIAT--RQTSQIRGQTQAIKNANDGISIAQTAEGALQESTNILQRMRELAVQSRNDSND-ST 107 (282)
T ss_pred HHhccCCCCCcccCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCC-HH
Confidence 3366777788887665444444 333322333333333 2335778888889888888888888876653 57
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 041344 193 QRRIACAEIERINKESTKQLET 214 (236)
Q Consensus 193 ~r~~~~sEierL~~~~~~q~~~ 214 (236)
.|..+..||+.|++++..-...
T Consensus 108 dr~ai~~ei~~l~~~i~~~an~ 129 (282)
T PRK12802 108 DRAALNKEFTTMLDEITRIATS 129 (282)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999998876654
No 77
>PRK08026 flagellin; Validated
Probab=44.28 E-value=2.8e+02 Score=27.77 Aligned_cols=106 Identities=16% Similarity=0.172 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHH-HhhhccccccCCCCCCCcHHHHHhhhccchHHHHHHHHH-------hhhhhhhHHHHHHHHHHHH
Q 041344 106 ECSKEIEAAMQISL-RNALGTMTNRITDGPMDDLSIMKETLRVKDEELQNLARD-------LRARDSTIRDIADKLSETA 177 (236)
Q Consensus 106 Ea~keieaaMqiS~-r~alg~~~n~~~~g~~Ddl~imkEtLrVKDeEl~~Lard-------lraRD~tIkeiadkLseTA 177 (236)
.-....+..|.-++ |-+.|..+|++.|.|.--.+++ .||-.-..|.|..|+ |..-|..+.+|-+-|+..-
T Consensus 16 ~~L~~~~~~l~~s~eqLSSG~RInsAsDDpag~aia~--~l~sqi~~l~qa~rN~~dg~s~lqtAE~aL~~i~d~LqRmr 93 (529)
T PRK08026 16 NNINKNQSALSSSIERLSSGLRINSAKDDAAGQAIAN--RFTSNIKGLTQAARNANDGISVAQTTEGALSEINNNLQRVR 93 (529)
T ss_pred HHHHHHHHHHHHHHHHHhhcCccCCcccCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444 3467778898888766655544 344444555555544 5566778888999999888
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 041344 178 EAAEAAASAAHTMDEQRRIACAEIERINKESTKQLET 214 (236)
Q Consensus 178 eAAEaAAsaaH~~de~r~~~~sEierL~~~~~~q~~~ 214 (236)
|-+..|+....+ ++.|..+-.||..|.+++.+-.+.
T Consensus 94 ELaVqAaNGT~S-~~DR~aiq~Ei~qL~~eI~~ia~~ 129 (529)
T PRK08026 94 ELTVQAATGTNS-QSDLDSIQDEIKSRLDEIDRVSGQ 129 (529)
T ss_pred HHHHHhccCCCC-HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888887776544 578999999999999999876653
No 78
>PF12814 Mcp5_PH: Meiotic cell cortex C-terminal pleckstrin homology; InterPro: IPR024774 This pleckstrin homology domain is found in eukaryotic proteins, including Mcp5, a fungal protein that anchors dynein at the cell cortex during the horsetail phase (prophase I) of meiosis. During prophase I of fission yeast all the telomeres become bundled at the spindle pole body and subsequently the nucleus undergoes a dynamic oscillation, resulting in elongated nuclear morphology known as "horsetail" nucleus. The pleckstrin homology domain is necessary for the cortical localisation of the Mcp5 protein during meiosis [].; GO: 0005515 protein binding, 0032065 cortical protein anchoring, 0005938 cell cortex
Probab=43.36 E-value=40 Score=26.38 Aligned_cols=32 Identities=22% Similarity=0.314 Sum_probs=26.8
Q ss_pred ceeEEeeeccccceeeeecChhHHHHHHHHHHH
Q 041344 35 GCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA 67 (236)
Q Consensus 35 gCCfyIgtpqkK~yfLcAETp~aaraWvstl~A 67 (236)
..||.|.||. +.+=|.|+|......|+.-|+.
T Consensus 88 ~~si~i~t~~-R~L~l~a~s~~~~~~W~~aL~~ 119 (123)
T PF12814_consen 88 NKSIIIVTPD-RSLDLTAPSRERHEIWFNALRY 119 (123)
T ss_pred ceEEEEEcCC-eEEEEEeCCHHHHHHHHHHHHH
Confidence 4578888885 5888999999999999998863
No 79
>cd01109 HTH_YyaN Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB. Putative helix-turn-helix (HTH) MerR-like transcription regulators of Bacillus subtilis, YyaN and YraB, and related proteins; N-terminal domain. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=42.61 E-value=70 Score=24.24 Aligned_cols=53 Identities=17% Similarity=0.233 Sum_probs=32.3
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 041344 156 ARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKES 208 (236)
Q Consensus 156 ardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~ 208 (236)
.+.+|.=.-+++||.+-|....+.........+.+.+++..+..+|++|.+.+
T Consensus 50 I~~lr~~G~sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~ 102 (113)
T cd01109 50 IKCLRNTGMSIKDIKEYAELRREGDSTIPERLELLEEHREELEEQIAELQETL 102 (113)
T ss_pred HHHHHHcCCCHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778889999887764322211222334566777777777776665443
No 80
>PLN02958 diacylglycerol kinase/D-erythro-sphingosine kinase
Probab=41.43 E-value=25 Score=33.64 Aligned_cols=67 Identities=25% Similarity=0.416 Sum_probs=43.1
Q ss_pred ccceeEEeeec---cccceeeeecChhHHHHHHHHHHHHHHHHHHHHH---HhhhcCCCCccc-c--hhHHHHHHhhh
Q 041344 33 YDGCCFYIGTP---QKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKE---AVNSLSGNGSAK-L--GTVATVVAAAN 101 (236)
Q Consensus 33 YDgCCfyIgtp---qkK~yfLcAETp~aaraWvstl~AtqlVlkAHKE---AvnslsgNg~ak-L--GtVAtvVAaAN 101 (236)
---||| |.| ..|+|-|.+-++..++.|+.+|+.-.--+...|. =||=-||+|.++ + ..|......++
T Consensus 68 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~kr~lvIvNP~SGkg~a~k~~~~~v~~~L~~~g 143 (481)
T PLN02958 68 GGICCR--GSAGALARKDFVFEPLSDESRRLWCQKLRDYLDSLGRPKRLLVFVNPFGGKKSASKIFFDVVKPLLEDAD 143 (481)
T ss_pred Cccccc--CCCCCceeeeEEEeCCCHHHHHHHHHHHHHHHhhccCCcEEEEEEcCCCCCcchhHHHHHHHHHHHHHcC
Confidence 345787 666 3488988888899999999999873211101111 267778988753 2 35665555554
No 81
>PRK11637 AmiB activator; Provisional
Probab=41.34 E-value=2.3e+02 Score=26.24 Aligned_cols=23 Identities=17% Similarity=0.512 Sum_probs=8.6
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHH
Q 041344 151 ELQNLARDLRARDSTIRDIADKL 173 (236)
Q Consensus 151 El~~LardlraRD~tIkeiadkL 173 (236)
+|+++-+.|..-..-|+++-+++
T Consensus 48 ~l~~l~~qi~~~~~~i~~~~~~~ 70 (428)
T PRK11637 48 QLKSIQQDIAAKEKSVRQQQQQR 70 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 82
>TIGR03166 alt_F1F0_F1_eps alternate F1F0 ATPase, F1 subunit epsilon. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 epsilon subunit of this apparent second ATP synthase.
Probab=41.02 E-value=39 Score=27.03 Aligned_cols=31 Identities=29% Similarity=0.402 Sum_probs=23.9
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041344 182 AAASAAHTMDEQRRIACAEIERINKESTKQL 212 (236)
Q Consensus 182 aAAsaaH~~de~r~~~~sEierL~~~~~~q~ 212 (236)
+-..+-+-.++..+.+++.+.||..++.+|+
T Consensus 92 ~i~~~~~~~~~~~~~~r~~~~~l~~~~~r~~ 122 (122)
T TIGR03166 92 AVRQEFLTLDEQERSARSAMARLESDFIRRL 122 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3334455788889999999999999888764
No 83
>PRK13589 flagellin; Provisional
Probab=41.01 E-value=3e+02 Score=28.32 Aligned_cols=102 Identities=23% Similarity=0.235 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHH-HhhhccccccCCCCCCCcHHHHHhhhcc--chHHHHHHHHH-------hhhhhhhHHHHHHHHHHHH
Q 041344 108 SKEIEAAMQISL-RNALGTMTNRITDGPMDDLSIMKETLRV--KDEELQNLARD-------LRARDSTIRDIADKLSETA 177 (236)
Q Consensus 108 ~keieaaMqiS~-r~alg~~~n~~~~g~~Ddl~imkEtLrV--KDeEl~~Lard-------lraRD~tIkeiadkLseTA 177 (236)
.+..+..|.-++ |-+.|...|++.| |+.-+.-..|. --..|.|..|+ +..-|..+.|+-+-|+..-
T Consensus 18 L~~~~s~Ls~s~eRLSSGlRINsASD----DpAGlAIA~rLrsQi~gL~Qa~rNandgiS~LQTAEgAL~ei~diLQRmR 93 (576)
T PRK13589 18 SVVNSRELDKSLSRLSSGLRINSAAD----DASGMAIADSLRSQAATLGQAINNGNDAIGILQTADKAMDEQLKILDTIK 93 (576)
T ss_pred HHHHHHHHHHHHHHHhhcCccCChhh----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444443 3366777777765 55444443333 33444444443 4556778899999999999
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 041344 178 EAAEAAASAAHTMDEQRRIACAEIERINKESTKQLET 214 (236)
Q Consensus 178 eAAEaAAsaaH~~de~r~~~~sEierL~~~~~~q~~~ 214 (236)
|-+..|+...++- +.|+.+-.||+.|+.++.+-...
T Consensus 94 ELAVQAANGT~S~-~DR~AIq~El~qL~eeI~~IANt 129 (576)
T PRK13589 94 TKATQAAQDGQSL-KTRTMLQADINRLMEELDNIANT 129 (576)
T ss_pred HHHHHHhcCCCCH-HHHHHHHHHHHHHHHHHHHHHhh
Confidence 9998888877764 57999999999999998877664
No 84
>cd01258 PH_syntrophin Syntrophin pleckstrin homology (PH) domain. Syntrophin pleckstrin homology (PH) domain. Syntrophins are peripheral membrane proteins, which associate with the Duchenne muscular dystrophy protein dystrophin and other proteins to form the dystrophin glycoprotein complex (DGC). There are five syntrophin isoforms, alpha1, beta1, beta2, gamma1, and gamma2. They all contain two PH domains, with the N-teminal PH domain interupted by a PDZ domain. The N-terminal PH domain of alpha1syntrophin binds phosphatidylinositol 4,5-bisphosphate. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=40.61 E-value=42 Score=26.98 Aligned_cols=29 Identities=31% Similarity=0.596 Sum_probs=26.2
Q ss_pred eEEeeeccc-cceeeeecChhHHHHHHHHH
Q 041344 37 CFYIGTPQK-KDYFLCAETPGAARAWVSTL 65 (236)
Q Consensus 37 CfyIgtpqk-K~yfLcAETp~aaraWvstl 65 (236)
||.|-|.+. ...+|..||+.....|-.-|
T Consensus 76 ~F~irtg~~vesh~fsVEt~~dL~~W~rai 105 (108)
T cd01258 76 CFLIRTGTQVENHYLRVETHRDLASWERAL 105 (108)
T ss_pred EEEEEcCCceeeEEEEecCHHHHHHHHHHH
Confidence 899999999 99999999999999997543
No 85
>PRK08411 flagellin; Reviewed
Probab=40.61 E-value=4.2e+02 Score=27.17 Aligned_cols=104 Identities=21% Similarity=0.255 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHH-HhhhccccccCCCCCCCcHHHHHhhhccchHHHHHHHHH-------hhhhhhhHHHHHHHHHHHHHH
Q 041344 108 SKEIEAAMQISL-RNALGTMTNRITDGPMDDLSIMKETLRVKDEELQNLARD-------LRARDSTIRDIADKLSETAEA 179 (236)
Q Consensus 108 ~keieaaMqiS~-r~alg~~~n~~~~g~~Ddl~imkEtLrVKDeEl~~Lard-------lraRD~tIkeiadkLseTAeA 179 (236)
.+..+..|.-++ |-+.|..+|++.|.|.--... +.||---..|.|..|. |..-|..+.|+-+-|+..-|-
T Consensus 18 L~~~~~~Ls~~~eqLSSGkRInsASDDPAGlAia--~rL~sqi~~L~Qa~rNa~dgiS~LqtAEgAL~ei~diLqRiREL 95 (572)
T PRK08411 18 SDLNAKSLDASLSRLSSGLRINSAADDASGMAIA--DSLRSQANTLGQAISNGNDALGILQTADKAMDEQLKILDTIKTK 95 (572)
T ss_pred HHHHHHHHHHHHHHHhhcCccCCchhCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333434444333 336677778877644433322 3344333444444433 455678889999999999999
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 041344 180 AEAAASAAHTMDEQRRIACAEIERINKESTKQLET 214 (236)
Q Consensus 180 AEaAAsaaH~~de~r~~~~sEierL~~~~~~q~~~ 214 (236)
+..|+...++- +.|..+-.||+.|+.++.+-...
T Consensus 96 aVQAaNGT~S~-~DR~AIq~EI~qL~eqI~~IANt 129 (572)
T PRK08411 96 ATQAAQDGQSL-KTRTMLQADINRLMEELDNIANT 129 (572)
T ss_pred HHHHhcCCCCH-HHHHHHHHHHHHHHHHHHHHHhh
Confidence 88888877664 68999999999999999877664
No 86
>cd01925 cyclophilin_CeCYP16-like cyclophilin_CeCYP16-like: cyclophilin-type peptidylprolyl cis- trans isomerase) (PPIase) domain similar to Caenorhabditis elegans cyclophilin 16. C. elegans CeCYP-16, compared to the archetypal cyclophilin Human cyclophilin A has, a reduced peptidylprolyl cis- trans isomerase activity, is cyclosporin insensitive and shows an altered substrate preference favoring, hydrophobic, acidic or amide amino acids. Most members of this subfamily have a glutamate residue in the active site at the position equivalent to a tryptophan (W121 in Human cyclophilin A), which has been shown to be important for cyclophilin binding.
Probab=39.98 E-value=18 Score=29.71 Aligned_cols=38 Identities=29% Similarity=0.485 Sum_probs=22.6
Q ss_pred CCCcceeEEeecCc---eeee----ecc---ccCCCC---CccceeEEeee
Q 041344 5 EPTVKGTITFDENS---TIAI----SPV---NFHGLP---KYDGCCFYIGT 42 (236)
Q Consensus 5 e~~~kG~I~fDa~S---Titi----SPv---Nf~g~~---kYDgCCfyIgt 42 (236)
||+.+|.+.|+.+. +|.| +|. ||..+- -||||+||=..
T Consensus 1 ~~~~~~~v~i~Ts~G~i~ieL~~~~~P~t~~nF~~L~~~~~Y~~~~f~Rvi 51 (171)
T cd01925 1 EPPTTGKVILKTTAGDIDIELWSKEAPKACRNFIQLCLEGYYDNTIFHRVV 51 (171)
T ss_pred CCCcccEEEEEEccccEEEEEeCCCChHHHHHHHHHHhcCCCCCCEEEEEc
Confidence 45566666665432 2222 454 776654 49999999544
No 87
>COG0840 Tar Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]
Probab=39.42 E-value=2.6e+02 Score=24.32 Aligned_cols=62 Identities=24% Similarity=0.331 Sum_probs=39.6
Q ss_pred hHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041344 149 DEELQNLARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTK 210 (236)
Q Consensus 149 DeEl~~LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~~ 210 (236)
.+++.+.+..+.....++++++....+.++.++.+...+....+.=+.+...+.++....++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~ 226 (408)
T COG0840 165 AESLEEVASAIEELSETVKEVAFNAKEAAALASEASQVAEEGGEEVRQAVEQMQEIAEELAE 226 (408)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666777777777777776666666666666555555555555566666666655554
No 88
>PF00640 PID: Phosphotyrosine interaction domain (PTB/PID) A page on PI domains.; InterPro: IPR006020 The PI domain has a similar structure to the insulin receptor substrate-1 PTB domain, a 7-stranded beta-sandwich, capped by a C-terminal helix. However, the PI domain contains an additional short N-terminal helix and a large insertion between strands 1 and 2, which forms a helix and 2 long connecting loops. The substrate peptide fits into a surface cleft formed from the C-terminal helix and strand 5 [].; GO: 0005515 protein binding; PDB: 1WGU_A 2YT0_A 2YT1_A 2YSZ_A 2ROZ_B 3SO6_A 2DYQ_A 1AQC_A 1X11_B 1WJ1_A ....
Probab=39.29 E-value=1.6e+02 Score=21.95 Aligned_cols=68 Identities=21% Similarity=0.399 Sum_probs=39.0
Q ss_pred CcceeEEeecCc--eeeeecc---ccCCC--CCccceeEEeeeccccc------eeeeecChhHHHHHHHHH-HHHHHHH
Q 041344 7 TVKGTITFDENS--TIAISPV---NFHGL--PKYDGCCFYIGTPQKKD------YFLCAETPGAARAWVSTL-HAAQLVL 72 (236)
Q Consensus 7 ~~kG~I~fDa~S--TitiSPv---Nf~g~--~kYDgCCfyIgtpqkK~------yfLcAETp~aaraWvstl-~AtqlVl 72 (236)
+..|...+|..+ .|.=-|+ -|.+. ++ |.++|...++..+. -|.| ++ .|..-+.+| .|-++..
T Consensus 59 s~~gI~v~~~~t~~~l~~~~i~~Is~~~~~d~~-~~~~Fafi~~~~~~~~~~CHVF~~-~~--~A~~i~~~i~~aF~~a~ 134 (140)
T PF00640_consen 59 SSDGIKVIDPDTGEVLMSHPIRRISFCAVGDPD-DKRVFAFIARDPRSSRFYCHVFKC-ED--QAQEICQAIGQAFELAY 134 (140)
T ss_dssp ETTEEEEEETTTTCEEEEEEGGGEEEEEESSTT-ETTEEEEEEEETSSSCEEEEEEEE-SS--CHHHHHHHHHHHHHHHH
T ss_pred cCCeEEEecCccccccccCCccceEEEEecCCC-cceEEEEEeccCCCCccccEeeeH-hh--HHHHHHHHHHHHHHHHH
Confidence 457888888755 4433343 34444 44 77777665444433 3444 44 777777777 4445555
Q ss_pred HHHHHH
Q 041344 73 KAHKEA 78 (236)
Q Consensus 73 kAHKEA 78 (236)
+..++|
T Consensus 135 ~~~~~~ 140 (140)
T PF00640_consen 135 QEFLRA 140 (140)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 555543
No 89
>cd04766 HTH_HspR Helix-Turn-Helix DNA binding domain of the HspR transcription regulator. Helix-turn-helix (HTH) transcription regulator HspR, N-terminal domain. Heat shock protein regulators (HspR) have been shown to regulate expression of specific regulons in response to high temperature or high osmolarity in Streptomyces and Helicobacter, respectively. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=39.26 E-value=90 Score=22.85 Aligned_cols=50 Identities=14% Similarity=0.295 Sum_probs=33.6
Q ss_pred ccchHHHHHHH--HHhhh-hhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041344 146 RVKDEELQNLA--RDLRA-RDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTK 210 (236)
Q Consensus 146 rVKDeEl~~La--rdlra-RD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~~ 210 (236)
+..++++..|. +.|+. -.-++++|..-|. +.++...+..||++|++++.+
T Consensus 38 ~y~~~dv~~l~~i~~L~~d~g~~l~~i~~~l~---------------l~~~~~~l~~~l~~l~~~~~~ 90 (91)
T cd04766 38 RYSERDIERLRRIQRLTQELGVNLAGVKRILE---------------LEEELAELRAELDELRARLRR 90 (91)
T ss_pred eECHHHHHHHHHHHHHHHHcCCCHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHhcc
Confidence 34555665543 44555 6678888876664 677777888888888877653
No 90
>PRK08073 flgL flagellar hook-associated protein FlgL; Validated
Probab=39.16 E-value=2.7e+02 Score=24.49 Aligned_cols=89 Identities=12% Similarity=0.304 Sum_probs=59.0
Q ss_pred HhhhccccccCCCCCCCcHHHHHhhhccch--HHHHHHHHHhhh-------hhhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 041344 120 RNALGTMTNRITDGPMDDLSIMKETLRVKD--EELQNLARDLRA-------RDSTIRDIADKLSETAEAAEAAASAAHTM 190 (236)
Q Consensus 120 r~alg~~~n~~~~g~~Ddl~imkEtLrVKD--eEl~~Lardlra-------RD~tIkeiadkLseTAeAAEaAAsaaH~~ 190 (236)
+-+.|...|++.|.|.. +..-++.+. ..+.+..+.+.. =|..+.+|.+-|+..-|-+-.|++...+
T Consensus 29 qlstG~~i~~~sDDp~~----~~~~~~l~~~~~~~~~~~~n~~~~~~~L~~~d~aL~~i~~~l~~~rel~v~a~n~t~s- 103 (287)
T PRK08073 29 QVTSGKKNLSMSEDPLA----ASKSFAIQHSLANIEQMQKDVADSKNVLNQTENTLSGMSKSLTRVDQLVLQALNGTND- 103 (287)
T ss_pred HHhcCCccCCcccCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-
Confidence 34567777777765444 444334333 233333333332 5677788888888888877777776554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 041344 191 DEQRRIACAEIERINKESTKQLE 213 (236)
Q Consensus 191 de~r~~~~sEierL~~~~~~q~~ 213 (236)
++.|..+-.|++.+++++-....
T Consensus 104 ~~~r~aia~e~~~l~~~i~~~~N 126 (287)
T PRK08073 104 EKELKAIGAEIDQILKQVVYLAN 126 (287)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 67899999999999999877666
No 91
>cd01242 PH_ROK Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok (Rho- associated kinase) pleckstrin homology (PH) domain. Rok is a serine/threonine kinase that binds GTP-rho. It consists of a kinase domain, a coiled coil region and a PH domain. The Rok PH domain is interrupted by a C1 domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=38.87 E-value=1.5e+02 Score=24.45 Aligned_cols=55 Identities=24% Similarity=0.329 Sum_probs=41.7
Q ss_pred EEeecCceeeeeccc----cCCCCCccceeEEeeecc-ccceeeeecChhHHHHHHHHHH
Q 041344 12 ITFDENSTIAISPVN----FHGLPKYDGCCFYIGTPQ-KKDYFLCAETPGAARAWVSTLH 66 (236)
Q Consensus 12 I~fDa~STitiSPvN----f~g~~kYDgCCfyIgtpq-kK~yfLcAETp~aaraWvstl~ 66 (236)
..||.+-.+.++||+ .|-.+|-=-|=|=|-++. ..+.+|-|++..-=+-||..|+
T Consensus 48 ~vldl~~~fhv~~V~asDVi~a~~kDiP~IF~I~~~~~~~~lllLA~s~~ek~kWV~~L~ 107 (112)
T cd01242 48 MILDIDKLFHVRPVTQGDVYRADAKEIPKIFQILYANEARDLLLLAPQTDEQNKWVSRLV 107 (112)
T ss_pred EEEEccceeeeecccHHHeeecCcccCCeEEEEEeCCccceEEEEeCCchHHHHHHHHHH
Confidence 457777799999997 344555556777777655 3678999999999999998774
No 92
>PTZ00267 NIMA-related protein kinase; Provisional
Probab=38.28 E-value=52 Score=30.07 Aligned_cols=38 Identities=16% Similarity=0.191 Sum_probs=29.0
Q ss_pred CCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344 30 LPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 30 ~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At 68 (236)
+++.+- ||-|-|-..|.+|+-++|+..-..|+..|+.+
T Consensus 438 ~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~W~~~~~~~ 475 (478)
T PTZ00267 438 SQKHPN-QLVLWFNNGQKIIAYAKTAEDRDQWISKFQRA 475 (478)
T ss_pred cCCCCc-eEEEEecCCcEEEEecCChHHHHHHHHHHHHH
Confidence 444444 47777766778888889999999999998754
No 93
>PLN03188 kinesin-12 family protein; Provisional
Probab=37.85 E-value=2.8e+02 Score=31.16 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhhhhh
Q 041344 197 ACAEIERINKESTKQLETCVLKVNFSQL 224 (236)
Q Consensus 197 ~~sEierL~~~~~~q~~~~~l~lk~~~~ 224 (236)
+-.+||.||+..+..+......|.|+.+
T Consensus 1230 ~~k~~~klkrkh~~e~~t~~q~~aes~l 1257 (1320)
T PLN03188 1230 AYKQIDKLKRKHENEISTLNQLVAESRL 1257 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 3445666666666555555555666654
No 94
>cd01927 cyclophilin_WD40 cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.
Probab=37.83 E-value=11 Score=30.30 Aligned_cols=40 Identities=20% Similarity=0.317 Sum_probs=27.6
Q ss_pred cceeEEeecCceeeeecc---ccCCCCC---ccceeEEeeeccccceeeee
Q 041344 8 VKGTITFDENSTIAISPV---NFHGLPK---YDGCCFYIGTPQKKDYFLCA 52 (236)
Q Consensus 8 ~kG~I~fDa~STitiSPv---Nf~g~~k---YDgCCfyIgtpqkK~yfLcA 52 (236)
..|.|.|+=+.. .+|. ||..+-+ ||||+||=-.| ++++..
T Consensus 5 ~~G~i~ieL~~~--~aP~t~~nF~~L~~~g~Y~~~~f~Rvi~---~f~iq~ 50 (148)
T cd01927 5 TKGDIHIRLFPE--EAPKTVENFTTHARNGYYNNTIFHRVIK---GFMIQT 50 (148)
T ss_pred ccccEEEEEeCC--CCcHHHHHHHHHhhcCCcCCcEEEEEcC---CcEEEe
Confidence 467787776654 3665 8877665 99999997765 455543
No 95
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=37.82 E-value=49 Score=33.36 Aligned_cols=29 Identities=17% Similarity=0.071 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhhhhhhhh
Q 041344 194 RRIACAEIERINKESTKQLETCVLKVNFS 222 (236)
Q Consensus 194 r~~~~sEierL~~~~~~q~~~~~l~lk~~ 222 (236)
-+++.+||||||+++-.+.++...|+-.|
T Consensus 255 i~~l~~EveRlrt~l~~Aqk~~~ek~~qy 283 (552)
T KOG2129|consen 255 IDKLQAEVERLRTYLSRAQKSYQEKLMQY 283 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788999999999988887776665444
No 96
>PRK07192 flgL flagellar hook-associated protein FlgL; Reviewed
Probab=37.78 E-value=2.8e+02 Score=24.20 Aligned_cols=91 Identities=15% Similarity=0.250 Sum_probs=62.1
Q ss_pred hhhccccccCCCCCCCcHHHHHhhhccchHHHHH-------HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 041344 121 NALGTMTNRITDGPMDDLSIMKETLRVKDEELQN-------LARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQ 193 (236)
Q Consensus 121 ~alg~~~n~~~~g~~Ddl~imkEtLrVKDeEl~~-------LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~ 193 (236)
-+.|...|++.|.|.+-..++. ||--...+.+ ...-|..-|..+.++.+.|.+.-+.+-.+++...+ ++.
T Consensus 30 lsTGk~i~~~sddp~~~~~~~~--l~~~~~~~~~~~~n~~~a~~~l~~~d~~L~~i~~~l~~~r~~~v~a~n~t~~-~~~ 106 (305)
T PRK07192 30 MSTGKRILTPSDDPIASARLLE--LSREQSNNSQYADNIANLSNSLNNQEGHLSGVNDQLQSIRSLLVAAGNGSLS-DED 106 (305)
T ss_pred HhcCCcCCCcccCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-HHH
Confidence 3667777777765555443332 2222223433 33345667888889999998888888887776654 688
Q ss_pred HHHHHHHHHHHHHHHHHHHhH
Q 041344 194 RRIACAEIERINKESTKQLET 214 (236)
Q Consensus 194 r~~~~sEierL~~~~~~q~~~ 214 (236)
|..+-.|++.+++++-.....
T Consensus 107 ~~~~a~e~~~l~~~l~~~~Nt 127 (305)
T PRK07192 107 RSAMATELRSMLDSLLGLANA 127 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHCC
Confidence 999999999999988776654
No 97
>PF11839 DUF3359: Protein of unknown function (DUF3359); InterPro: IPR021793 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=37.66 E-value=2.2e+02 Score=22.94 Aligned_cols=44 Identities=25% Similarity=0.274 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 041344 150 EELQNLARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQ 193 (236)
Q Consensus 150 eEl~~LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~ 193 (236)
+|++..+.++..+-.-++..|+.-+.+|+.|...|-.++.-=+.
T Consensus 31 d~~~~~a~~a~~~a~~a~~~A~~A~~~AdeA~~kA~~A~aaA~~ 74 (96)
T PF11839_consen 31 DEAQSTAEQAQATAASAQSAAASAQQRADEAASKADAALAAAEA 74 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 47888888888888889999999999988888777777765443
No 98
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=36.70 E-value=84 Score=23.92 Aligned_cols=53 Identities=19% Similarity=0.213 Sum_probs=32.2
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 041344 155 LARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKE 207 (236)
Q Consensus 155 LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~ 207 (236)
+-+.+|.-.-+++||.+-|..-.+...+-....+.+.+++..+-.+|++|.+.
T Consensus 49 ~I~~lr~~G~sl~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~ 101 (123)
T cd04770 49 FIRRAQALGFSLAEIRELLSLRDDGAAPCAEVRALLEEKLAEVEAKIAELQAL 101 (123)
T ss_pred HHHHHHHCCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777889999988775432221112233455677777777777666443
No 99
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=34.38 E-value=1.3e+02 Score=27.70 Aligned_cols=81 Identities=25% Similarity=0.354 Sum_probs=51.1
Q ss_pred CcHHHHHhhhcc-------chHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 041344 136 DDLSIMKETLRV-------KDEELQNLARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKES 208 (236)
Q Consensus 136 Ddl~imkEtLrV-------KDeEl~~LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~ 208 (236)
+.+...+|.|+- |-.++.++-..+..-+..|.+..++.+|+-+.--.|- ...++.|..-..||.+|+...
T Consensus 204 ~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae---~~~~~~r~~t~~Ei~~Lk~~~ 280 (312)
T smart00787 204 TELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAE---KKLEQCRGFTFKEIEKLKEQL 280 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhcCCCCHHHHHHHHHHH
Confidence 445555555543 4445566667777777778887777777665543333 356677777888999998776
Q ss_pred HHHHhHhhhhh
Q 041344 209 TKQLETCVLKV 219 (236)
Q Consensus 209 ~~q~~~~~l~l 219 (236)
+.=...+.+++
T Consensus 281 ~~Le~l~g~~~ 291 (312)
T smart00787 281 KLLQSLTGWKI 291 (312)
T ss_pred HHHHHHhCCee
Confidence 55444444443
No 100
>PRK14692 lagellar hook-associated protein FlgL; Provisional
Probab=34.37 E-value=5.2e+02 Score=27.24 Aligned_cols=86 Identities=20% Similarity=0.268 Sum_probs=60.2
Q ss_pred hhccccccCCCCCCCcHHHHHhhhccchHHHHHHHH----------HhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 041344 122 ALGTMTNRITDGPMDDLSIMKETLRVKDEELQNLAR----------DLRARDSTIRDIADKLSETAEAAEAAASAAHTMD 191 (236)
Q Consensus 122 alg~~~n~~~~g~~Ddl~imkEtLrVKDeEl~~Lar----------dlraRD~tIkeiadkLseTAeAAEaAAsaaH~~d 191 (236)
+.|...|++ -||+..+...+|.+. ++..+.+ -|..-|..+.+|.+-|+..-|-+..|+...++ +
T Consensus 31 SSGkrI~~p----SDDPaaa~~alrL~s-~i~~l~Qy~~Ni~~A~s~L~~tEtaL~sI~~iLqr~ReLaVqAaNGT~S-~ 104 (749)
T PRK14692 31 ASGLKIQNS----YEDASTYIDNTRLEY-EIKTLEQVKESTSRAQEMTQNSMKALQDMVKLLEDFKVKVTQAASDSNS-Q 104 (749)
T ss_pred hccCccCCh----hhCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-H
Confidence 445555554 566777777766654 3333333 34455677788888888887888888877764 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 041344 192 EQRRIACAEIERINKESTKQLE 213 (236)
Q Consensus 192 e~r~~~~sEierL~~~~~~q~~ 213 (236)
+.|..+-.|++.|++++-....
T Consensus 105 ~dR~AIA~El~~L~eqLl~iAN 126 (749)
T PRK14692 105 TSREAIAKELERIKESIVQLAN 126 (749)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 7899999999999999877665
No 101
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=34.14 E-value=1.9e+02 Score=26.15 Aligned_cols=66 Identities=24% Similarity=0.303 Sum_probs=51.1
Q ss_pred cchHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041344 147 VKDEELQNLARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTKQL 212 (236)
Q Consensus 147 VKDeEl~~LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~~q~ 212 (236)
...+||..|-..|..-+..|.+.-.+|.+.-+--+.--.....+.+++..+.+||..+.+..++.-
T Consensus 206 ~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r 271 (325)
T PF08317_consen 206 CDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECR 271 (325)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455788888888888888888766666666665566666677788999999999999998887443
No 102
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=33.91 E-value=86 Score=23.26 Aligned_cols=21 Identities=24% Similarity=0.140 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041344 192 EQRRIACAEIERINKESTKQL 212 (236)
Q Consensus 192 e~r~~~~sEierL~~~~~~q~ 212 (236)
..-..+-+|+|.|+++++...
T Consensus 47 ~e~~~Lk~E~e~L~~el~~~r 67 (69)
T PF14197_consen 47 EENNKLKEENEALRKELEELR 67 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 445568889999999876543
No 103
>cd01108 HTH_CueR Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators. Helix-turn-helix (HTH) transcription regulators CueR and ActP, copper efflux regulators. In Bacillus subtilis, copper induced CueR regulates the copZA operon, preventing copper toxicity. In Rhizobium leguminosarum, ActP controls copper homeostasis; it detects cytoplasmic copper stress and activates transcription in response to increasing copper concentrations. These proteins are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have two conserved cysteines that define a monovalent copper ion binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements
Probab=33.72 E-value=1.5e+02 Score=23.05 Aligned_cols=52 Identities=15% Similarity=0.132 Sum_probs=31.6
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 041344 155 LARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINK 206 (236)
Q Consensus 155 LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~ 206 (236)
+.+.+|.=.-+|+||..-|....+...........++++...+-.+|++|.+
T Consensus 49 ~I~~lr~~G~sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~ 100 (127)
T cd01108 49 FIRRARDLGFSLEEIRELLALWRDPSRASADVKALALEHIAELERKIAELQA 100 (127)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677778899998877543222112222345677777777777777643
No 104
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=33.67 E-value=72 Score=27.84 Aligned_cols=51 Identities=20% Similarity=0.190 Sum_probs=37.1
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhccccC
Q 041344 180 AEAAASAAHTMDEQRRIACAEIERINKESTKQLETCVLKVNFSQLFCGLLHN 231 (236)
Q Consensus 180 AEaAAsaaH~~de~r~~~~sEierL~~~~~~q~~~~~l~lk~~~~~~~~~~~ 231 (236)
.+.-+.-.+.+|+-.+.+-.||++|.++.+ ++|....++|-..-|.+.|++
T Consensus 108 ~~tf~rL~~~Vd~~~~eL~~eI~~L~~~i~-~le~~~~~~k~LrnKa~~L~~ 158 (171)
T PF04799_consen 108 SSTFARLCQQVDQTKNELEDEIKQLEKEIQ-RLEEIQSKSKTLRNKANWLES 158 (171)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 344566778899999999999999998875 466666677766666666543
No 105
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=33.23 E-value=2.3e+02 Score=27.73 Aligned_cols=64 Identities=25% Similarity=0.315 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH------------HhHhhhhhhhhh----hhhccc
Q 041344 166 IRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTKQ------------LETCVLKVNFSQ----LFCGLL 229 (236)
Q Consensus 166 IkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~~q------------~~~~~l~lk~~~----~~~~~~ 229 (236)
.|+..+.|+|.-|+-..+.--+-.--+.-..+..|+|.+++++|+| ++++.-|||+-- +.+|++
T Consensus 282 fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemEe~G~~msDGaplvkIkqavsKLk~et~~mnv~igv~ 361 (384)
T KOG0972|consen 282 FRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEMEEQGAKMSDGAPLVKIKQAVSKLKEETQTMNVQIGVF 361 (384)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCchHHHHHHHHHHHHHHHHhhhhheehh
Confidence 3455666666666555544333333334445778999999999975 566777777643 556655
No 106
>cd04768 HTH_BmrR-like Helix-Turn-Helix DNA binding domain of BmrR-like transcription regulators. Helix-turn-helix (HTH) BmrR-like transcription regulators (TipAL, Mta, SkgA, BmrR, and BltR), N-terminal domain. These proteins have been shown to regulate expression of specific regulons in response to various toxic substances, antibiotics, or oxygen radicals in Bacillus subtilis, Streptomyces, and Caulobacter crescentus. They are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=33.23 E-value=1.2e+02 Score=22.70 Aligned_cols=52 Identities=15% Similarity=0.220 Sum_probs=35.1
Q ss_pred hHHHHH--HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 041344 149 DEELQN--LARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINK 206 (236)
Q Consensus 149 DeEl~~--LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~ 206 (236)
++++.. +.+.+|.-.-.|+||.+-|.... ......+++++..+..+|++|.+
T Consensus 41 ~~~l~~l~~I~~lr~~G~~l~~I~~~l~~~~------~~~~~~l~~~~~~l~~~i~~l~~ 94 (96)
T cd04768 41 YAQLYQLQFILFLRELGFSLAEIKELLDTEM------EELTAMLLEKKQAIQQKIDRLQQ 94 (96)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHhcCc------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 344443 34667888899999998876432 14556677788777777777754
No 107
>KOG3811 consensus Transcription factor AP-2 [Transcription]
Probab=33.16 E-value=98 Score=30.72 Aligned_cols=57 Identities=26% Similarity=0.304 Sum_probs=49.4
Q ss_pred hHHHHHHHHHhhh---hhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 041344 149 DEELQNLARDLRA---RDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERIN 205 (236)
Q Consensus 149 DeEl~~Lardlra---RD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~ 205 (236)
.+|--+||||+-. -+--+|+||+-|.+..-+-+..--..+.|++.-+..|.|+..|-
T Consensus 289 E~EAvHLArDf~~vcE~efP~~~Iae~l~r~~l~~~~~~~~rk~ml~~t~q~~ke~~~lL 348 (434)
T KOG3811|consen 289 EEEAVHLARDFGYVCETEFPARAIAEELLRKHLAPENDLDDRKNMLLATTQICKELTDLL 348 (434)
T ss_pred HHHHHHHHHhhhhhhhhhccHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3788999999864 34568999999999988888888899999999999999998876
No 108
>cd07221 Pat_PNPLA3 Patatin-like phospholipase domain containing protein 3. PNPLA3 is a triacylglycerol lipase that mediates triacylglycerol hydrolysis in adipocytes and is an indicator of the nutritional state. PNPLA3 is also known as adiponutrin (ADPN) or iPLA2-epsilon. Human adiponutrins are bound to the cell membrane of adipocytes and show transacylase, TG hydrolase, and PLA2 activity. This family includes patatin-like proteins: ADPN (adiponutrin) from mammals, PNPLA3 (Patatin-like phospholipase domain-containing protein 3), and iPLA2-epsilon (Calcium-independent phospholipase A2) from Homo sapiens.
Probab=33.14 E-value=94 Score=27.30 Aligned_cols=66 Identities=29% Similarity=0.388 Sum_probs=40.5
Q ss_pred eecCceeeeeccccCCCCCccceeEEeeeccccc----eeeee------cChhHHHHHHHHH-----HHHHHHHHHHHHH
Q 041344 14 FDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKD----YFLCA------ETPGAARAWVSTL-----HAAQLVLKAHKEA 78 (236)
Q Consensus 14 fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~----yfLcA------ETp~aaraWvstl-----~AtqlVlkAHKEA 78 (236)
+|+.-|||||| |+|. +|-| |+.+. ++.+. .+...-|-|.+-. ...++..+--+.|
T Consensus 169 ~~~~~~I~Vsp--f~~~--~di~------p~~~~~~~~~~~~~~~~~~~~~~n~~~~~~a~~pp~~~~l~~~~~~G~~da 238 (252)
T cd07221 169 FDAKTTITVSP--FYGE--YDIC------PKVKSTNFLHVDFTKLSLRLCTENLYLLTRALFPPDVKVLGEICLRGYLDA 238 (252)
T ss_pred cCCCCeEEEec--CcCC--CCcC------CCCCCccceeeeeecceEEeeHHHHHHHHHHhCCCCHHHHHHHHHhhHHHH
Confidence 35778999999 4664 6766 55432 22221 2233445555432 5566777778889
Q ss_pred hhhcCCCCccc
Q 041344 79 VNSLSGNGSAK 89 (236)
Q Consensus 79 vnslsgNg~ak 89 (236)
+.+|--||-.+
T Consensus 239 ~~~l~~~~~~~ 249 (252)
T cd07221 239 FRFLEENGICN 249 (252)
T ss_pred HHHHHHCCCcc
Confidence 99988888543
No 109
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=33.00 E-value=90 Score=21.13 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhhh
Q 041344 191 DEQRRIACAEIERINKESTKQLETCVLKVNF 221 (236)
Q Consensus 191 de~r~~~~sEierL~~~~~~q~~~~~l~lk~ 221 (236)
|||| +.+|.|.||+..| |++.-+-+|+.
T Consensus 2 dEqk--L~sekeqLrrr~e-qLK~kLeqlrn 29 (32)
T PF02344_consen 2 DEQK--LISEKEQLRRRRE-QLKHKLEQLRN 29 (32)
T ss_dssp HHHH--HHHHHHHHHHHHH-HHHHHHHHH--
T ss_pred hhHH--HHHHHHHHHHHHH-HHHHHHHHHhc
Confidence 5555 5678888877654 44444444443
No 110
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=32.96 E-value=2.6e+02 Score=27.57 Aligned_cols=60 Identities=13% Similarity=0.340 Sum_probs=35.9
Q ss_pred hHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 041344 149 DEELQNLARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKES 208 (236)
Q Consensus 149 DeEl~~LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~ 208 (236)
|+.|.+..+||..-...|+++.|+++.+...--..-.-.-.++.+++..-.+++.+++++
T Consensus 37 ~~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I 96 (420)
T COG4942 37 DKQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQI 96 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH
Confidence 355666677776666666666666666655544444445555666665555555555543
No 111
>TIGR02044 CueR Cu(I)-responsive transcriptional regulator. This model represents the copper-, silver- and gold- (I) responsive transcriptional activator of the gamma proteobacterial copper efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X7-Cys. This family also lacks a conserved cysteine at the N-terminal end of the dimerization helix which is required for the binding of divalent metals such as zinc; here it is replaced by a serine residue.
Probab=32.77 E-value=1.3e+02 Score=23.41 Aligned_cols=53 Identities=11% Similarity=0.070 Sum_probs=29.9
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 041344 155 LARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKE 207 (236)
Q Consensus 155 LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~ 207 (236)
+.+.+|.-.-+|+||.+-|....+...........+.+++..+-.+|++|.+.
T Consensus 49 ~I~~lr~~G~sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~ 101 (127)
T TIGR02044 49 LISRARQVGFSLEECKELLNLWNDPNRTSADVKARTLEKVAEIERKISELQSM 101 (127)
T ss_pred HHHHHHHCCCCHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777888999988775321111111222334566677776666665543
No 112
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=32.51 E-value=3.2e+02 Score=26.88 Aligned_cols=65 Identities=14% Similarity=0.225 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHh
Q 041344 150 EELQNLARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTKQLETC 215 (236)
Q Consensus 150 eEl~~LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~~q~~~~ 215 (236)
..++||.. |++--.-.--+++.|.+....++-.-.....|.+.|..+..|+..++-.++.-++..
T Consensus 419 ~~~~~L~~-Ik~SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~pkL~~l~~~T 483 (507)
T PF05600_consen 419 PRTQHLFM-IKSSPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELEPKLDALVERT 483 (507)
T ss_pred HHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34556554 555556666788888888899999999999999999999999999887666555444
No 113
>COG5293 Predicted ATPase [General function prediction only]
Probab=32.18 E-value=1.6e+02 Score=30.19 Aligned_cols=54 Identities=20% Similarity=0.327 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 041344 150 EELQNLARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKES 208 (236)
Q Consensus 150 eEl~~LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~ 208 (236)
+||-.+-+||+.|+.-+.++..++.|.++- --.|-+=|.++.+|.|+-+++-++
T Consensus 342 ~ei~~i~~dLk~~n~~~~~l~~~rae~l~~-----Lk~~g~~e~y~~l~ee~~~~~~el 395 (591)
T COG5293 342 EEIAEIEGDLKEVNAELDDLGKRRAEGLAF-----LKNRGVFEKYQTLCEEIIALRGEL 395 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhCCcHHHHHHHHHHHHHHhhhH
Confidence 678888999999999999999887665433 335778888999998887776543
No 114
>TIGR02837 spore_II_R stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage II sporulation protein R.
Probab=32.02 E-value=97 Score=27.08 Aligned_cols=45 Identities=22% Similarity=0.460 Sum_probs=33.1
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 041344 158 DLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTKQLE 213 (236)
Q Consensus 158 dlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~~q~~ 213 (236)
-++=||.++..|..+|.+ +++.++-|+.+.+.++.+++..++.+.
T Consensus 57 Kl~VRD~Vl~~~~~~~~~-----------~~s~~ea~~~i~~~l~~Ie~~a~~~l~ 101 (168)
T TIGR02837 57 KLKVRDAVLKEIRPWLSG-----------LKSLEEARRVIRENLPEIERIAESVIK 101 (168)
T ss_pred HHHHHHHHHHHHHHHhcc-----------CCCHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 367789999999999877 456667777777777777666655544
No 115
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=31.18 E-value=2e+02 Score=20.60 Aligned_cols=27 Identities=26% Similarity=0.430 Sum_probs=15.0
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHH
Q 041344 150 EELQNLARDLRARDSTIRDIADKLSET 176 (236)
Q Consensus 150 eEl~~LardlraRD~tIkeiadkLseT 176 (236)
++|.++...++.+-..+...-..|.+.
T Consensus 3 ~~L~~~l~~l~~~~~~~~~~~~~l~~~ 29 (127)
T smart00502 3 EALEELLTKLRKKAAELEDALKQLISI 29 (127)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 456666666666655555444444443
No 116
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.81 E-value=1.4e+02 Score=32.52 Aligned_cols=61 Identities=15% Similarity=0.313 Sum_probs=39.1
Q ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 041344 153 QNLARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTKQLE 213 (236)
Q Consensus 153 ~~LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~~q~~ 213 (236)
.||-..|.+=+--+++|-.||..+-----.+--..-.|+++|....+||+.|..+++.+.+
T Consensus 440 ~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~ 500 (1118)
T KOG1029|consen 440 KQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQE 500 (1118)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555544333334445567999999999999999887765544
No 117
>PRK12803 flagellin; Provisional
Probab=30.29 E-value=4.6e+02 Score=24.49 Aligned_cols=92 Identities=16% Similarity=0.221 Sum_probs=65.4
Q ss_pred HhhhccccccCCCCCCCcHHHHHhhhccchHHHHHHHH-------HhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 041344 120 RNALGTMTNRITDGPMDDLSIMKETLRVKDEELQNLAR-------DLRARDSTIRDIADKLSETAEAAEAAASAAHTMDE 192 (236)
Q Consensus 120 r~alg~~~n~~~~g~~Ddl~imkEtLrVKDeEl~~Lar-------dlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de 192 (236)
|-+.|...|++.|.|.--..+ +.||-.-..+.+..+ -|..-|..+.++-+-|+..-|-+..|+....+ ++
T Consensus 29 qLSSGkrIn~asDDPa~~aia--~~l~s~i~~l~q~~~Ni~~a~s~lqtae~aL~~i~~~LqrirELavqA~Ngt~s-~~ 105 (335)
T PRK12803 29 KLSSGHRINRASDDAAGMGVA--GKINAQIRGLSQASRNTSKAINFIQTTEGNLNEVEKVLVRMKELAVQSGNGTYS-DA 105 (335)
T ss_pred HHhccCccCCcccCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC-HH
Confidence 557788888888766554433 334433334444433 35667888899999999988888888766554 57
Q ss_pred HHHHHHHHHHHHHHHHHHHHhH
Q 041344 193 QRRIACAEIERINKESTKQLET 214 (236)
Q Consensus 193 ~r~~~~sEierL~~~~~~q~~~ 214 (236)
.|..+-.||+.|++++..-...
T Consensus 106 dR~ai~~Ei~qL~~~i~~ian~ 127 (335)
T PRK12803 106 DRGSIQIEIEQLTDEINRIADQ 127 (335)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 7999999999999998876653
No 118
>cd04782 HTH_BltR Helix-Turn-Helix DNA binding domain of the BltR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BltR (BmrR-like transporter) of Bacillus subtilis, and related proteins; N-terminal domain. Blt, like Bmr, is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. These regulators are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=30.24 E-value=1.3e+02 Score=22.48 Aligned_cols=46 Identities=17% Similarity=0.261 Sum_probs=29.3
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 041344 155 LARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERIN 205 (236)
Q Consensus 155 LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~ 205 (236)
+.+.+|.-.-.|+||.+-|.... .....+.+.+++..+..||++|.
T Consensus 49 ~I~~lr~~G~~l~eI~~~l~~~~-----~~~~~~~l~~~~~~l~~~i~~l~ 94 (97)
T cd04782 49 IILLLKELGISLKEIKDYLDNRN-----PDELIELLKKQEKEIKEEIEELQ 94 (97)
T ss_pred HHHHHHHcCCCHHHHHHHHhcCC-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888899999998775321 12234456666666666666654
No 119
>cd01924 cyclophilin_TLP40_like cyclophilin_TLP40_like: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) similar ot the Spinach thylakoid lumen protein TLP40. Compared to the archetypal cyclophilin Human cyclophilin A, these proteins have similar peptidylprolyl cis- trans isomerase activity and reduced affinity for cyclosporin A. Spinach TLP40 has been shown to have a dual function as a folding catalyst and regulator of dephosphorylation.
Probab=30.17 E-value=20 Score=29.94 Aligned_cols=43 Identities=35% Similarity=0.398 Sum_probs=27.7
Q ss_pred CCCCcceeEEeecCceeeeecc---ccCCCC---CccceeEEeeeccccceeee
Q 041344 4 NEPTVKGTITFDENSTIAISPV---NFHGLP---KYDGCCFYIGTPQKKDYFLC 51 (236)
Q Consensus 4 ~e~~~kG~I~fDa~STitiSPv---Nf~g~~---kYDgCCfyIgtpqkK~yfLc 51 (236)
++.+..|.|.|+-+-- .+|+ ||..+- -||+|+||=.. |+++++
T Consensus 1 ~~~T~~G~i~ieL~~~--~aP~t~~NF~~L~~~g~Ydg~~FhRVi---~~fviQ 49 (176)
T cd01924 1 GEATDNGTITIVLDGY--NAPVTAGNFVDLVERGFYDGMEFHRVE---GGFVVQ 49 (176)
T ss_pred CCccccceEEEEEcCC--CCCHHHHHHHHHHHhCCcCCCEEEEec---CCcEEE
Confidence 3566788888875543 3453 665544 49999999654 455554
No 120
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=29.88 E-value=44 Score=30.15 Aligned_cols=25 Identities=44% Similarity=0.628 Sum_probs=23.3
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHH
Q 041344 150 EELQNLARDLRARDSTIRDIADKLS 174 (236)
Q Consensus 150 eEl~~LardlraRD~tIkeiadkLs 174 (236)
|||-+=|+.|++|--|..||||.|.
T Consensus 5 eeLi~kA~eLk~~Glt~gEIAdELN 29 (203)
T COG0856 5 EELIKKARELKSKGLTTGEIADELN 29 (203)
T ss_pred HHHHHHHHHHHHCCCcHHHhhhhhh
Confidence 6888899999999999999999985
No 121
>cd01226 PH_exo84 Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exocyst complex 84-kDa subunit Pleckstrin Homology (PH) domain. Exo84 is a subunit of the exocyt complex, which is important in intracellular trafficking. In metazoa, Exo84 has a PH domain towards its N-terminus. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains. PH domains are found in cellular signaling proteins such as serine/threonine kinase, tyrosine kinsases, regulators of G-proteins, endocytotic GTPases, adaptors, a well as cytoskeletal associated molecules and in lipid associated enzymes.
Probab=29.73 E-value=96 Score=24.77 Aligned_cols=43 Identities=14% Similarity=0.111 Sum_probs=30.7
Q ss_pred ccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344 24 PVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 24 PvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At 68 (236)
.+|+--.+ +-.=+|-|.||.+.-. +.||||..=+.|.+.|.=|
T Consensus 55 V~ni~D~~-~~kNafki~t~~~s~i-~qaes~~~K~eWl~~le~a 97 (100)
T cd01226 55 VVNVKDRE-NAKKVLKLLIFPESRI-YQCESARIKTEWFEELEQA 97 (100)
T ss_pred EEecCCCc-CcCceEEEEeCCccEE-EEeCCHHHHHHHHHHHHHH
Confidence 34443333 3466899999976654 5679999999999998644
No 122
>PF06056 Terminase_5: Putative ATPase subunit of terminase (gpP-like); InterPro: IPR010332 This family of proteins are annotated as ATPase subunits of phage terminase after []. Terminases are viral proteins that are involved in packaging viral DNA into the capsid.; GO: 0005524 ATP binding, 0019069 viral capsid assembly
Probab=29.50 E-value=48 Score=23.59 Aligned_cols=26 Identities=31% Similarity=0.474 Sum_probs=21.6
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHH
Q 041344 151 ELQNLARDLRARDSTIRDIADKLSET 176 (236)
Q Consensus 151 El~~LardlraRD~tIkeiadkLseT 176 (236)
|+.+.|+.|--+--+++|||++|.--
T Consensus 1 e~k~~A~~LY~~G~~~~eIA~~Lg~~ 26 (58)
T PF06056_consen 1 EVKEQARSLYLQGWSIKEIAEELGVP 26 (58)
T ss_pred CHHHHHHHHHHcCCCHHHHHHHHCCC
Confidence 45677888888899999999999753
No 123
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=29.17 E-value=1.8e+02 Score=29.64 Aligned_cols=63 Identities=17% Similarity=0.175 Sum_probs=48.2
Q ss_pred cchHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 041344 147 VKDEELQNLARDLRAR--DSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKEST 209 (236)
Q Consensus 147 VKDeEl~~LardlraR--D~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~ 209 (236)
=|++||+.|+.+||.| |--.+++=+.+.+.-+---..---.|.+-+.-+.+..-+|||.+++-
T Consensus 405 dk~~el~kl~~~l~~r~~~~s~~~l~~~~~qLt~tl~qkq~~le~v~~~~~~ln~~lerLq~~~N 469 (554)
T KOG4677|consen 405 DKQYELTKLAARLKLRAWNDSVDALFTTKNQLTYTLKQKQIGLERVVEILHKLNAPLERLQEYVN 469 (554)
T ss_pred chHHHHHHHHHHHHHHhhhhhHHHHhchhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhc
Confidence 3789999999998765 55677787777777766666666677777777777888888887765
No 124
>PRK12718 flgL flagellar hook-associated protein FlgL; Provisional
Probab=29.07 E-value=3.3e+02 Score=26.98 Aligned_cols=94 Identities=12% Similarity=0.173 Sum_probs=61.5
Q ss_pred HHHHhhhccccccCCCCCCCcHHHHHhhhccchHHHHHHHHHhh-------hhhhhHHHHHHHHHHHHHHHHHHHhhhhh
Q 041344 117 ISLRNALGTMTNRITDGPMDDLSIMKETLRVKDEELQNLARDLR-------ARDSTIRDIADKLSETAEAAEAAASAAHT 189 (236)
Q Consensus 117 iS~r~alg~~~n~~~~g~~Ddl~imkEtLrVKDeEl~~Lardlr-------aRD~tIkeiadkLseTAeAAEaAAsaaH~ 189 (236)
+--+-+.|...|++.|.|+--..+|. |+-.-..+.|..+.+. .=+.++.++.+-|+..-|-+..|+....+
T Consensus 26 ~q~QlsSGkrI~~pSDDPvaaa~~l~--l~q~~~~~eQY~~Ni~~A~~~L~~~EstL~sv~~~L~rirel~VqA~Ngt~s 103 (510)
T PRK12718 26 LQEQLSSGRRVLTPADDPLAAALAVN--VSQTSSMNSNYDANRKQAEQALGAQTNTLQSVVKNMQEMLKRVVEAGNGTMS 103 (510)
T ss_pred HHHHHhcCCccCCcccCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 33355777778888776655554432 3333444555555432 23466778888888888777777665444
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Q 041344 190 MDEQRRIACAEIERINKESTKQLE 213 (236)
Q Consensus 190 ~de~r~~~~sEierL~~~~~~q~~ 213 (236)
++.|..+-.||+.|++++..-..
T Consensus 104 -~~dR~aia~El~~l~~qL~~laN 126 (510)
T PRK12718 104 -DADRQALVIALKGAREELVGLAN 126 (510)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHh
Confidence 67899999999999988765443
No 125
>PHA02949 Hypothetical protein; Provisional
Probab=29.06 E-value=26 Score=26.68 Aligned_cols=21 Identities=19% Similarity=0.351 Sum_probs=17.3
Q ss_pred ceeEEeeeccccceeeeecCh
Q 041344 35 GCCFYIGTPQKKDYFLCAETP 55 (236)
Q Consensus 35 gCCfyIgtpqkK~yfLcAETp 55 (236)
||||-|--|+|++-+|--.=|
T Consensus 35 G~clnIKk~sk~e~~L~NdYP 55 (65)
T PHA02949 35 GHSFNVKRFTNEEMCLKNDYP 55 (65)
T ss_pred ceeeeecccccchhhhccCCC
Confidence 999999999999887765444
No 126
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=28.95 E-value=6.3e+02 Score=25.68 Aligned_cols=18 Identities=22% Similarity=0.665 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 041344 104 AQECSKEIEAAMQISLRN 121 (236)
Q Consensus 104 a~Ea~keieaaMqiS~r~ 121 (236)
=..|+.|+..|||.+|-.
T Consensus 321 Ek~c~eEL~~al~~A~~G 338 (488)
T PF06548_consen 321 EKKCTEELDDALQRAMEG 338 (488)
T ss_pred HHHhHHHHHHHHHHHHHH
Confidence 467889999999988754
No 127
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=28.54 E-value=31 Score=30.76 Aligned_cols=29 Identities=24% Similarity=0.252 Sum_probs=25.0
Q ss_pred eEEeecCceeeeeccccCCCCCccceeEEeeeccc
Q 041344 11 TITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQK 45 (236)
Q Consensus 11 ~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqk 45 (236)
.+.+|+.|++-.-|+++.+ .| ||++..||
T Consensus 166 ~~vVDa~qs~G~~pidv~~---iD---~~~~s~~K 194 (378)
T PRK03080 166 LTICDATSAAFALPLDWSK---LD---VYTFSWQK 194 (378)
T ss_pred eEEEecccccccCCCCHHH---Cc---EEEEehhh
Confidence 4669999999999999985 35 88899997
No 128
>PRK12717 flgL flagellar hook-associated protein FlgL; Provisional
Probab=27.65 E-value=5.1e+02 Score=25.43 Aligned_cols=89 Identities=21% Similarity=0.350 Sum_probs=59.1
Q ss_pred HhhhccccccCCCCCCCcHHHHHhhhccc--hHHHHHHHH-------HhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 041344 120 RNALGTMTNRITDGPMDDLSIMKETLRVK--DEELQNLAR-------DLRARDSTIRDIADKLSETAEAAEAAASAAHTM 190 (236)
Q Consensus 120 r~alg~~~n~~~~g~~Ddl~imkEtLrVK--DeEl~~Lar-------dlraRD~tIkeiadkLseTAeAAEaAAsaaH~~ 190 (236)
+-+.|...|++.|-|.. +..-++++ -..+.+..+ -|..-|..+..+.+-|+..-|-+..|+....+
T Consensus 29 QlSSGkri~~psDDP~~----a~~~~~l~~~~~~l~qy~~Ni~~a~~~L~~~esaL~~i~~~lqr~rel~vqa~ngt~s- 103 (523)
T PRK12717 29 QASSGIRIQTAADDPVG----AARLLQLQQQQAMLDQYSGNITTIKNSLTQEESTLTSINDTLQRARELAVSAGNGGLT- 103 (523)
T ss_pred HHhccCccCCcccCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-
Confidence 33556666766654444 44444443 333444333 34556777888888888888888777776554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 041344 191 DEQRRIACAEIERINKESTKQLE 213 (236)
Q Consensus 191 de~r~~~~sEierL~~~~~~q~~ 213 (236)
++.|..+-.|++.|++++-...-
T Consensus 104 ~~dr~aia~El~~l~~~l~~~aN 126 (523)
T PRK12717 104 DADRKAIASELKQIEAQLLGLMN 126 (523)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999998876543
No 129
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=27.59 E-value=1.3e+02 Score=27.14 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=34.0
Q ss_pred cHHHHHhhhccchHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 041344 137 DLSIMKETLRVKDEELQNLARDLRARDSTIRDIADKLSETAEAAEAAA 184 (236)
Q Consensus 137 dl~imkEtLrVKDeEl~~LardlraRD~tIkeiadkLseTAeAAEaAA 184 (236)
|.+..+|.+|=++++|++|-.....++. +=|+.-|-+++++.-+
T Consensus 144 ~~t~lk~~~~~~~~~le~Lqkn~~~~~k----~~d~~ne~~~~v~~e~ 187 (192)
T COG5374 144 DSTDLKARLRKAQILLEGLQKNQEELFK----LLDKYNELREQVQKES 187 (192)
T ss_pred chHHHHHHHhhhhHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHH
Confidence 5789999999999999999998887765 4466666666665544
No 130
>PF05335 DUF745: Protein of unknown function (DUF745); InterPro: IPR007999 This family consists of several uncharacterised Drosophila melanogaster proteins of unknown function.
Probab=27.05 E-value=4.3e+02 Score=23.08 Aligned_cols=53 Identities=21% Similarity=0.297 Sum_probs=40.8
Q ss_pred cchHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH
Q 041344 147 VKDEELQNLARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACA 199 (236)
Q Consensus 147 VKDeEl~~LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~s 199 (236)
=|.-=+++|-+++|.-+..+.|....|..+-..+.+|..+++..-.+-..+..
T Consensus 64 GKq~iveqLe~ev~EAe~vV~ee~~sL~~aq~na~aA~~aa~~A~~q~~~L~~ 116 (188)
T PF05335_consen 64 GKQQIVEQLEQEVREAEAVVQEEKASLQQAQANAQAAQRAAQQAQQQLETLKA 116 (188)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666889999999999999999999999988888877777665555444433
No 131
>PF10824 DUF2580: Protein of unknown function (DUF2580); InterPro: IPR022536 This entry represents the ESX-1 secretion-associated protein EspC protein family.
Probab=26.85 E-value=1.9e+02 Score=20.00 Aligned_cols=36 Identities=36% Similarity=0.493 Sum_probs=26.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHH
Q 041344 159 LRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQR 194 (236)
Q Consensus 159 lraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r 194 (236)
+..+...++.+++.+.++++.-..+|..-+..|+.-
T Consensus 59 ~~~~~~~~~~~~~~~~~~a~~L~~aA~~Y~~~D~~~ 94 (100)
T PF10824_consen 59 LEARQAALEQLAEALDEFADALRAAADRYEATDEDN 94 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556778888888888888888888888777653
No 132
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=26.43 E-value=4.5e+02 Score=29.58 Aligned_cols=31 Identities=26% Similarity=0.313 Sum_probs=20.8
Q ss_pred hhhhhhHHHHHHHHHH-HHHHHHHHHHHHhHh
Q 041344 185 SAAHTMDEQRRIACAE-IERINKESTKQLETC 215 (236)
Q Consensus 185 saaH~~de~r~~~~sE-ierL~~~~~~q~~~~ 215 (236)
...-+.|+.|.....| |++|+++.+.-.+.+
T Consensus 850 ~~k~~~d~~~l~~~~~~ie~l~kE~e~~qe~~ 881 (1293)
T KOG0996|consen 850 VLKKVVDKKRLKELEEQIEELKKEVEELQEKA 881 (1293)
T ss_pred hhhccCcHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555677777666666 888888877665443
No 133
>KOG1917 consensus Membrane-associated hematopoietic protein [General function prediction only]
Probab=26.30 E-value=2.2e+02 Score=31.26 Aligned_cols=73 Identities=21% Similarity=0.243 Sum_probs=60.4
Q ss_pred HHhhhccchHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHH-HHHHHHHHHHHHHHHHHHHh
Q 041344 141 MKETLRVKDEELQNLARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQ-RRIACAEIERINKESTKQLE 213 (236)
Q Consensus 141 mkEtLrVKDeEl~~LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~-r~~~~sEierL~~~~~~q~~ 213 (236)
|-=-|++-++|+.++=+-+-+----||.+..++.+.-|+=|+|-.-+-+|+-+ |+++.+++.+|-.=+.+|-+
T Consensus 288 m~~~l~~frde~~~lh~~~e~~~~~i~g~sKr~~~i~e~~~~a~q~a~~~hrerr~flr~~l~el~l~~tdQpg 361 (1125)
T KOG1917|consen 288 MSYCLLLFRDEVFVIHQVIEAKFMAIKGYSKRIKDIKEAHEQAVQLADTMHRERRKFLRSALKELALFLTDQPG 361 (1125)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 34457899999999999999999999999999999999999998888888755 45677888888777766654
No 134
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=26.27 E-value=4.5e+02 Score=23.07 Aligned_cols=181 Identities=17% Similarity=0.221 Sum_probs=90.5
Q ss_pred eeeeeccccCCCC-------------------CccceeEEeeeccccceeeeecChhHHHHHHHHHHHHHHHHHHHHHHh
Q 041344 19 TIAISPVNFHGLP-------------------KYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKEAV 79 (236)
Q Consensus 19 TitiSPvNf~g~~-------------------kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~AtqlVlkAHKEAv 79 (236)
.|.+-|+-|+|.. .||.-+.-=|---.-|+| |-.....||++.. --+
T Consensus 43 ~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs~eDL~-~FN~e~varai~~-------------~~~ 108 (319)
T PF02601_consen 43 EIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGSIEDLW-AFNDEEVARAIAA-------------SPI 108 (319)
T ss_pred EEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCChHHhc-ccChHHHHHHHHh-------------CCC
Confidence 4667777777753 355555444444445655 5566777776542 125
Q ss_pred hhcCCCCcccchhHHHHHHhhhhhH-----HHHHHHHHHHHHHHHHhhhccccccCCCCCCCcHHHHHhhhccchHHHHH
Q 041344 80 NSLSGNGSAKLGTVATVVAAANSTA-----QECSKEIEAAMQISLRNALGTMTNRITDGPMDDLSIMKETLRVKDEELQN 154 (236)
Q Consensus 80 nslsgNg~akLGtVAtvVAaAN~ta-----~Ea~keieaaMqiS~r~alg~~~n~~~~g~~Ddl~imkEtLrVKDeEl~~ 154 (236)
=-+||=||-.==|++=-||--..-+ .-+..+....++ -+... . -.-...|+..|.-+...|++
T Consensus 109 PvisaIGHe~D~ti~D~vAd~ra~TPtaaAe~~~~~~~~~~~-~l~~~----~-------~~l~~~~~~~l~~~~~~L~~ 176 (319)
T PF02601_consen 109 PVISAIGHETDFTIADFVADLRAPTPTAAAELIVPDRRELLQ-RLDEL----R-------QRLNRAMRNRLQRKRQRLNQ 176 (319)
T ss_pred CEEEecCCCCCchHHHHHHHhhCCCHHHHHHHHhhhHHHHHH-HHHHH----H-------HHHHHHHHHHHHHHHHHHHH
Confidence 5688999876667666665322211 111111111111 00000 0 01123466667777777777
Q ss_pred HHHHhhhhh-----hhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH-------------------HHHHHHHHHHHHH
Q 041344 155 LARDLRARD-----STIRDIADKLSETAEAAEAAASAAHTMDEQRRIA-------------------CAEIERINKESTK 210 (236)
Q Consensus 155 LardlraRD-----~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~-------------------~sEierL~~~~~~ 210 (236)
+.+.+.... ..|.+--.+|.+.-+..+.+. -|.+...+..+ ...+.+|++.++.
T Consensus 177 l~~~l~~~~~~~p~~~l~~~~~~Ld~l~~rL~~~~--~~~l~~~~~~L~~l~~~l~~~~~~~~l~~~~~~~~~l~~~~~~ 254 (319)
T PF02601_consen 177 LAKRLQLQSRRLPERKLEQQQQRLDELKQRLKQAI--QQKLQRKRQRLQNLSNRLKRQSPQQKLNQQRQQLQRLQKRLQR 254 (319)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhhhhhHHHhh
Confidence 777776655 345555555555555444421 12222111111 1445566666666
Q ss_pred HHhHhhhhhhhhhhhhc
Q 041344 211 QLETCVLKVNFSQLFCG 227 (236)
Q Consensus 211 q~~~~~l~lk~~~~~~~ 227 (236)
.++....+|.......-
T Consensus 255 ~l~~~~~~l~~~~~~L~ 271 (319)
T PF02601_consen 255 KLSQKRQRLERLEARLE 271 (319)
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 66555555555554443
No 135
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=25.67 E-value=3.3e+02 Score=31.62 Aligned_cols=65 Identities=15% Similarity=0.219 Sum_probs=52.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH---HhHhhhhhhhhh
Q 041344 159 LRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTKQ---LETCVLKVNFSQ 223 (236)
Q Consensus 159 lraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~~q---~~~~~l~lk~~~ 223 (236)
+-..+...|.++++|++-.+.-|.+....+...+-|..+-.|++.+.-++++. ....-.++|.++
T Consensus 1374 ~eelee~kk~l~~~lq~~qe~~e~~~~~~~~Lek~k~~l~~el~d~~~d~~~~~~~~~~le~k~k~f~ 1441 (1930)
T KOG0161|consen 1374 LEELEELKKKLQQRLQELEEQIEAANAKNASLEKAKNRLQQELEDLQLDLERSRAAVAALEKKQKRFE 1441 (1930)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778899999999999999999999999999999999999999888776 333344444443
No 136
>cd04784 HTH_CadR-PbrR Helix-Turn-Helix DNA binding domain of the CadR and PbrR transcription regulators. Helix-turn-helix (HTH) CadR and PbrR transcription regulators including Pseudomonas aeruginosa CadR and Ralstonia metallidurans PbrR that regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which form a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=25.45 E-value=1.7e+02 Score=22.61 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=31.4
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 041344 155 LARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINK 206 (236)
Q Consensus 155 LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~ 206 (236)
+.+.+|.=.-+++||.+-|..-.+..++.......+.++++.+-.+|+.|.+
T Consensus 49 ~I~~lr~~G~sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~ 100 (127)
T cd04784 49 FIRRCRSLDMSLDEIRTLLQLQDDPEASCAEVNALIDEHLAHVRARIAELQA 100 (127)
T ss_pred HHHHHHHcCCCHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677788999998877532221112223345567777777777777653
No 137
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=25.42 E-value=2.4e+02 Score=24.05 Aligned_cols=57 Identities=19% Similarity=0.412 Sum_probs=30.7
Q ss_pred cchHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 041344 147 VKDEELQNLARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTKQ 211 (236)
Q Consensus 147 VKDeEl~~LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~~q 211 (236)
.+...+..|-+++..=..-|.++-++|.+... ..--.+.|.....|++.|+++...-
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~--------~r~~~~eR~~~l~~l~~l~~~~~~l 122 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEAKK--------GREESEEREELLEELEELKKELKEL 122 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------cccccHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555554444445555555444322 2222378888888888777765443
No 138
>PF02248 Como_SCP: Small coat protein; InterPro: IPR003182 The virus capsid is composed 60 icosahedral units, each of which is composed of one copy of each of the two coat proteins. This family contains the small coat protein (SCP) [] of the comoviridae viral family.; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 1PGW_1 1PGL_1 1BMV_1 1NY7_1 2BFU_S.
Probab=25.42 E-value=1.3e+02 Score=26.74 Aligned_cols=39 Identities=31% Similarity=0.409 Sum_probs=27.1
Q ss_pred CcceeEEe------------ecCceeeeeccccCCCCCccceeEEeeeccc
Q 041344 7 TVKGTITF------------DENSTIAISPVNFHGLPKYDGCCFYIGTPQK 45 (236)
Q Consensus 7 ~~kG~I~f------------Da~STitiSPvNf~g~~kYDgCCfyIgtpqk 45 (236)
=-||+++| |=.||..|+=+|=....-|+.+=|||.+|.-
T Consensus 64 WkrGTLh~kVv~~gssvkrsdw~st~qi~l~~s~n~~s~~a~~~~is~p~s 114 (182)
T PF02248_consen 64 WKRGTLHFKVVMRGSSVKRSDWRSTSQISLTNSENSSSYNARSWVISEPHS 114 (182)
T ss_dssp CEEEEEEEEEEEEETTS-CCC--BEEEEEEESSSSTTS--SEEEEEBSSSC
T ss_pred hhcCeEEEEEEEEecccccccccceEEEEEEecCCcccccceeEEEcCCCc
Confidence 34677766 3356777777888888899999999999954
No 139
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=25.19 E-value=81 Score=22.80 Aligned_cols=43 Identities=16% Similarity=0.275 Sum_probs=33.0
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 041344 150 EELQNLARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDE 192 (236)
Q Consensus 150 eEl~~LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de 192 (236)
.|.-+|-||......+-..+..|+.|+.-....-.+-++.+|+
T Consensus 4 q~~l~L~R~~~~~~~~Y~~Ll~r~~e~~~~~~~~~~~~~ivd~ 46 (82)
T PF13807_consen 4 QEYLRLQRDVEIKRELYETLLQRYEEARLSKASNVSNVRIVDP 46 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeccc
Confidence 4555899999999999999999999887776555555666654
No 140
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=25.09 E-value=3.5e+02 Score=27.79 Aligned_cols=20 Identities=20% Similarity=0.443 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041344 191 DEQRRIACAEIERINKESTK 210 (236)
Q Consensus 191 de~r~~~~sEierL~~~~~~ 210 (236)
-.+|+.+-+|+.+||.++..
T Consensus 544 r~r~~~lE~E~~~lr~elk~ 563 (697)
T PF09726_consen 544 RQRRRQLESELKKLRRELKQ 563 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34667788889999887754
No 141
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=25.05 E-value=1.4e+02 Score=27.73 Aligned_cols=63 Identities=22% Similarity=0.327 Sum_probs=35.0
Q ss_pred hHHHHHHHHHhhhhhhhHHHHHHHHHH----------------------HHHHHHHHHhh--------hhhhHHHHHHHH
Q 041344 149 DEELQNLARDLRARDSTIRDIADKLSE----------------------TAEAAEAAASA--------AHTMDEQRRIAC 198 (236)
Q Consensus 149 DeEl~~LardlraRD~tIkeiadkLse----------------------TAeAAEaAAsa--------aH~~de~r~~~~ 198 (236)
-.|+..|--.|+.||..|.+=+=-|.. +.|+|..-.++ .--+.+.|..+.
T Consensus 153 ~~e~~~Lre~L~~rdeli~khGlVlv~~~~ngd~~~~~~~~~~~~~~~vs~e~a~~L~~aG~g~LDvRLkKl~~eke~L~ 232 (302)
T PF09738_consen 153 REELDELREQLKQRDELIEKHGLVLVPDATNGDTSDEPNNVGHPKRALVSQEAAQLLESAGDGSLDVRLKKLADEKEELL 232 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCeeeCCCCCCCccccCccccCCCcccccchhhhhhhcccCCCCHHHHHHHHHHHHHHHH
Confidence 344445555677788877763322221 34444444444 222335577777
Q ss_pred HHHHHHHHHHHHH
Q 041344 199 AEIERINKESTKQ 211 (236)
Q Consensus 199 sEierL~~~~~~q 211 (236)
++|..|+.+++..
T Consensus 233 ~qv~klk~qLee~ 245 (302)
T PF09738_consen 233 EQVRKLKLQLEER 245 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888777543
No 142
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=24.85 E-value=4.8e+02 Score=22.92 Aligned_cols=58 Identities=9% Similarity=0.149 Sum_probs=31.6
Q ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 041344 151 ELQNLARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTKQ 211 (236)
Q Consensus 151 El~~LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~~q 211 (236)
+|..|..|++.=-..+.+...+|++--+... +..+..-+.+...|.|.|..++..++.
T Consensus 95 ~l~~l~~~~~~~rK~~~~~~~kl~~el~~~~---~el~k~Kk~Y~~~~~e~e~Ar~k~e~a 152 (237)
T cd07657 95 KLTLLIKDKRKAKKAYQEERQQIDEQYKKLT---DEVEKLKSEYQKLLEDYKAAKSKFEEA 152 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555545555555555544333222 444455566667777777776665554
No 143
>PRK10227 DNA-binding transcriptional regulator CueR; Provisional
Probab=24.73 E-value=1.9e+02 Score=23.27 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=13.7
Q ss_pred HHHHhhhhhhhHHHHHHHHH
Q 041344 155 LARDLRARDSTIRDIADKLS 174 (236)
Q Consensus 155 LardlraRD~tIkeiadkLs 174 (236)
+.+.+|.=.-.|+||.+-|.
T Consensus 49 ~I~~lr~~G~sl~eI~~~l~ 68 (135)
T PRK10227 49 LLRQARQVGFNLEESGELVN 68 (135)
T ss_pred HHHHHHHCCCCHHHHHHHHH
Confidence 44566666778888877664
No 144
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=24.40 E-value=3.9e+02 Score=21.76 Aligned_cols=14 Identities=29% Similarity=0.204 Sum_probs=9.1
Q ss_pred hhhhhhhccccCcc
Q 041344 220 NFSQLFCGLLHNPI 233 (236)
Q Consensus 220 k~~~~~~~~~~~~~ 233 (236)
.+.....|++++|-
T Consensus 129 ~~l~~~~~~~~~P~ 142 (177)
T PF13870_consen 129 KKLRQQGGLLGVPA 142 (177)
T ss_pred HHHHHhcCCCCCcH
Confidence 34456678888874
No 145
>cd04783 HTH_MerR1 Helix-Turn-Helix DNA binding domain of the MerR1 transcription regulator. Helix-turn-helix (HTH) transcription regulator MerR1. MerR1 transcription regulators, such as Tn21 MerR and Tn501 MerR, mediate response to mercury exposure in eubacteria. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines that define a mercury binding site. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=24.16 E-value=2.2e+02 Score=22.00 Aligned_cols=50 Identities=12% Similarity=0.167 Sum_probs=30.1
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 041344 155 LARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINK 206 (236)
Q Consensus 155 LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~ 206 (236)
+.+.+|.=.-+++||.+-|....+. ........+.+++..+-.+|++|++
T Consensus 49 ~I~~lr~~G~sL~eI~~~l~~~~~~--~~~~~~~~l~~~~~~l~~~i~~L~~ 98 (126)
T cd04783 49 FIKRAQELGFTLDEIAELLELDDGT--DCSEARELAEQKLAEVDEKIADLQR 98 (126)
T ss_pred HHHHHHHcCCCHHHHHHHHhcccCC--CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777778888888777532211 1122344566677777777776644
No 146
>PLN03149 peptidyl-prolyl isomerase H (cyclophilin H); Provisional
Probab=24.13 E-value=29 Score=29.22 Aligned_cols=36 Identities=25% Similarity=0.408 Sum_probs=21.4
Q ss_pred ceeEEeecCcee-eeeccccCCCCC-----------ccceeEEeeecc
Q 041344 9 KGTITFDENSTI-AISPVNFHGLPK-----------YDGCCFYIGTPQ 44 (236)
Q Consensus 9 kG~I~fDa~STi-tiSPvNf~g~~k-----------YDgCCfyIgtpq 44 (236)
.|.|.|+=+... -..--||..+-+ |++|+||=..|.
T Consensus 32 ~G~i~ieL~~~~aP~t~~NF~~Lc~g~~~~~g~~~~Y~~~~fhrVi~~ 79 (186)
T PLN03149 32 AGRIKMELFADIAPKTAENFRQFCTGEFRKAGLPQGYKGCQFHRVIKD 79 (186)
T ss_pred cccEEEEEcCCCCcHHHHHHHHHHhhhccccCcccccCCcEEEEEcCC
Confidence 455655544332 122248877642 999999976653
No 147
>PLN02678 seryl-tRNA synthetase
Probab=23.88 E-value=1.9e+02 Score=28.12 Aligned_cols=12 Identities=33% Similarity=0.346 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 041344 196 IACAEIERINKE 207 (236)
Q Consensus 196 ~~~sEierL~~~ 207 (236)
.+..|+..|+++
T Consensus 75 ~l~~~~~~Lk~e 86 (448)
T PLN02678 75 ELIAETKELKKE 86 (448)
T ss_pred HHHHHHHHHHHH
Confidence 344444444433
No 148
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=23.77 E-value=1.8e+02 Score=22.86 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=30.7
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 041344 156 ARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKE 207 (236)
Q Consensus 156 ardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~ 207 (236)
.+-+|.=.-+++||.+-|.-..+...+.....+.+++++..+-.+|++|++.
T Consensus 50 I~~lr~lG~sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~ 101 (127)
T TIGR02047 50 IRNCRTLDMSLAEIRQLLRYQDKPEKSCSDVNALLDEHISHVRARIIKLQAL 101 (127)
T ss_pred HHHHHHcCCCHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666778888888775322221222334456677777777777776543
No 149
>PRK06397 V-type ATP synthase subunit H; Validated
Probab=23.60 E-value=4.4e+02 Score=22.03 Aligned_cols=60 Identities=23% Similarity=0.361 Sum_probs=35.4
Q ss_pred CcHHHHHhhhccchHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH--HHhhhhhhHHHHHHHH
Q 041344 136 DDLSIMKETLRVKDEELQNLARDLRARDSTIRDIADKLSETAEAAEA--AASAAHTMDEQRRIAC 198 (236)
Q Consensus 136 Ddl~imkEtLrVKDeEl~~LardlraRD~tIkeiadkLseTAeAAEa--AAsaaH~~de~r~~~~ 198 (236)
+.+.|.||-=---|+|+.|+- ...+..|||+-.+--+-++--|. -+----.++++|.++-
T Consensus 10 e~ikiIKeKE~S~dkEI~~~k---~eqe~~iKEa~~k~ee~~~kteeE~~~~Y~~~l~e~RkeaE 71 (111)
T PRK06397 10 EEIKIIKEKEESIDKEIANIK---NEQENEIKEAKSKYEEKAKKTEEESLNMYNAALMEARKEAE 71 (111)
T ss_pred HHHHHHHHhhhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 334566665555688888775 45788899987765554443322 1222234677776653
No 150
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=23.55 E-value=5.9e+02 Score=23.53 Aligned_cols=33 Identities=24% Similarity=0.210 Sum_probs=23.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhh
Q 041344 190 MDEQRRIACAEIERINKESTKQLETCVLKVNFS 222 (236)
Q Consensus 190 ~de~r~~~~sEierL~~~~~~q~~~~~l~lk~~ 222 (236)
+-.-|=....|.|+|..+++++-+..+.|.+-.
T Consensus 216 Lq~vRPAfmdEyEklE~EL~~lY~~Y~~kfRNl 248 (267)
T PF10234_consen 216 LQSVRPAFMDEYEKLEEELQKLYEIYVEKFRNL 248 (267)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 334455566788888888888888888877643
No 151
>cd04787 HTH_HMRTR_unk Helix-Turn-Helix DNA binding domain of putative Heavy Metal Resistance transcription regulators. Putative helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR), unknown subgroup. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules, such as, metal ions, drugs, and organic substrates. This subgroup lacks one of the c
Probab=23.54 E-value=2.6e+02 Score=21.98 Aligned_cols=53 Identities=13% Similarity=0.196 Sum_probs=32.9
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 041344 154 NLARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINK 206 (236)
Q Consensus 154 ~LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~ 206 (236)
.+-+.+|.=.-+++||.+-|....+...........+.+++..+-.+|.+|.+
T Consensus 48 ~~I~~lr~~G~sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~ 100 (133)
T cd04787 48 RFILSARQLGFSLKDIKEILSHADQGESPCPMVRRLIEQRLAETERRIKELLK 100 (133)
T ss_pred HHHHHHHHcCCCHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777788899988866543222112223345567777777777777654
No 152
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=23.38 E-value=1.2e+02 Score=23.29 Aligned_cols=24 Identities=33% Similarity=0.476 Sum_probs=17.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHH
Q 041344 188 HTMDEQRRIACAEIERINKESTKQ 211 (236)
Q Consensus 188 H~~de~r~~~~sEierL~~~~~~q 211 (236)
--++++--++.+||+||+-++.+.
T Consensus 28 ~El~eRIalLq~EIeRlkAe~~kK 51 (65)
T COG5509 28 AELEERIALLQAEIERLKAELAKK 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345666667889999999887654
No 153
>PRK14126 cell division protein ZapA; Provisional
Probab=23.10 E-value=3.2e+02 Score=20.67 Aligned_cols=58 Identities=14% Similarity=0.134 Sum_probs=32.4
Q ss_pred hHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041344 149 DEELQNLARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTK 210 (236)
Q Consensus 149 DeEl~~LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~~ 210 (236)
.+.|+++|+.+-.+=.-|++-+..|+..--|--+|-..+ |+.- .+..|++.|+++++.
T Consensus 26 ee~l~~vA~~vd~km~ei~~~~~~ls~~~iAVLaALNia---~El~-k~~~~~~~l~~~~~~ 83 (85)
T PRK14126 26 TSHIRMVAAIVDDKMRELNEKNPSLDTSKLAVLTAVNVI---HDYI-KLKEEYEKLKESMTK 83 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH---HHHH-HHHHHHHHHHHHHhc
Confidence 467888888886554444444434554444444443333 3332 335677777777664
No 154
>cd04785 HTH_CadR-PbrR-like Helix-Turn-Helix DNA binding domain of the CadR- and PbrR-like transcription regulators. Helix-turn-helix (HTH) CadR- and PbrR-like transcription regulators. CadR and PbrR regulate expression of the cadmium and lead resistance operons, respectively. These proteins are comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains have three conserved cysteines which comprise a putative metal binding site. Some members in this group have a histidine-rich C-terminal extension. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=22.98 E-value=2.5e+02 Score=21.88 Aligned_cols=51 Identities=16% Similarity=0.154 Sum_probs=29.7
Q ss_pred HHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 041344 156 ARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINK 206 (236)
Q Consensus 156 ardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~ 206 (236)
-+.+|.=.-+++||.+-|................+.++++.+-.+|++|.+
T Consensus 50 I~~lr~~G~sL~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~ 100 (126)
T cd04785 50 IRRARDLGFSLEEIRALLALSDRPDRSCAEADAIARAHLADVRARIADLRR 100 (126)
T ss_pred HHHHHHCCCCHHHHHHHHhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667888888766432211112223344567777777777777644
No 155
>cd01224 PH_Collybistin Collybistin pleckstrin homology (PH) domain. Collybistin pleckstrin homology (PH) domain. Collybistin is GEF which induces submembrane clustering of the receptor-associated peripheral membrane protein gephyrin. It consists of an SH3 domain, followed by a RhoGEF(dbH) and PH domain. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or insertions in the N-terminus of the domain, which are not conserved across all PH domains.
Probab=22.96 E-value=2.9e+02 Score=22.43 Aligned_cols=63 Identities=19% Similarity=0.292 Sum_probs=41.5
Q ss_pred CCCCCCcceeEEeecCceeeeeccccC--CCCCccceeEEeeeccc-cceeeeecChhHHHHHHHHHH
Q 041344 2 RRNEPTVKGTITFDENSTIAISPVNFH--GLPKYDGCCFYIGTPQK-KDYFLCAETPGAARAWVSTLH 66 (236)
Q Consensus 2 ~R~e~~~kG~I~fDa~STitiSPvNf~--g~~kYDgCCfyIgtpqk-K~yfLcAETp~aaraWvstl~ 66 (236)
+|+.-..||.|..|..--+-+.+-.-. |. ---..|+|--.++ +-|-||+-||..=..|...|.
T Consensus 39 r~~~~~yKgri~l~~~~I~d~~Dg~~~~~~~--~~knafkl~~~~~~~~~~f~~Kt~e~K~~Wm~a~~ 104 (109)
T cd01224 39 RRDHLYYKGRIDLDRCEVVNIRDGKMFSSGH--TIKNSLKIYSESTDEWYLFSFKSAERKHRWLSAFA 104 (109)
T ss_pred cCCcEEEEEEEEcccEEEEECCCCccccCCc--eeEEEEEEEEcCCCeEEEEEECCHHHHHHHHHHHH
Confidence 566677788887776433333222111 11 1235788887774 569999999999999998874
No 156
>PF02895 H-kinase_dim: Signal transducing histidine kinase, homodimeric domain; InterPro: IPR004105 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This helical bundle domain is the homodimer interface of the signal transducing histidine kinase family [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0006935 chemotaxis, 0005737 cytoplasm; PDB: 1I5D_A 1B3Q_A.
Probab=22.95 E-value=73 Score=22.18 Aligned_cols=61 Identities=20% Similarity=0.366 Sum_probs=25.9
Q ss_pred hhhccchHHHHH---HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041344 143 ETLRVKDEELQN---LARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTKQL 212 (236)
Q Consensus 143 EtLrVKDeEl~~---LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~~q~ 212 (236)
+|+||.-+-|.+ |+-+|=-=...+..++..+. .......++.=......++|+-++++..+
T Consensus 2 ~tiRV~~~kLD~L~nlvGELvi~r~~l~~~~~~~~---------~~~~~~~~~~l~~~~~~l~rl~~eLq~~v 65 (68)
T PF02895_consen 2 STIRVDVEKLDRLMNLVGELVIARNRLEQLAEQLE---------ESQLDALSRELEESLERLSRLSRELQEAV 65 (68)
T ss_dssp -EEEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCH------------------HCCHHHHHHHHHHHHHHHHHH
T ss_pred CceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------hhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578887655544 44444332333333333333 01111122222345566667777766543
No 157
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=22.91 E-value=6.1e+02 Score=24.94 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 041344 165 TIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKEST 209 (236)
Q Consensus 165 tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~ 209 (236)
-|+++-++|.+.-..-...-..-....++...+-.+|++++++++
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 466 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLD 466 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444433333333333344444444555555555555443
No 158
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=22.80 E-value=7e+02 Score=24.09 Aligned_cols=94 Identities=19% Similarity=0.250 Sum_probs=58.1
Q ss_pred CCCCCCCc------HHHHHhhhccchHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH-------HHhhhhhhHHHHHH
Q 041344 130 ITDGPMDD------LSIMKETLRVKDEELQNLARDLRARDSTIRDIADKLSETAEAAEA-------AASAAHTMDEQRRI 196 (236)
Q Consensus 130 ~~~g~~Dd------l~imkEtLrVKDeEl~~LardlraRD~tIkeiadkLseTAeAAEa-------AAsaaH~~de~r~~ 196 (236)
+..+.+|. +.-+++-.----||++.|-+.|.....=+.+.-..+....+..+. ......+-+.+-+.
T Consensus 262 ~~~~~~~~~~~~~el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~e~e~~l 341 (511)
T PF09787_consen 262 CLEEGFDSSTNSIELEELKQERDHLQEEIQLLERQIEQLRAELQDLEAQLEGEQESFREQPQELSQQLEPELTTEAELRL 341 (511)
T ss_pred ccccccccccchhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhchHHHHHH
Confidence 34455665 555555555555888888888866666666666666654444322 22222222566667
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhhhhh
Q 041344 197 ACAEIERINKESTKQLETCVLKVNFSQ 223 (236)
Q Consensus 197 ~~sEierL~~~~~~q~~~~~l~lk~~~ 223 (236)
...|+..++.++.++.....+|+++-+
T Consensus 342 ~~~el~~~~ee~~~~~s~~~~k~~~ke 368 (511)
T PF09787_consen 342 YYQELYHYREELSRQKSPLQLKLKEKE 368 (511)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 778888888888777777666665544
No 159
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=22.56 E-value=80 Score=33.15 Aligned_cols=40 Identities=28% Similarity=0.321 Sum_probs=33.5
Q ss_pred cceeEEeeeccccc-eeeeecChhHHHHHHHHHHHHHHHHH
Q 041344 34 DGCCFYIGTPQKKD-YFLCAETPGAARAWVSTLHAAQLVLK 73 (236)
Q Consensus 34 DgCCfyIgtpqkK~-yfLcAETp~aaraWvstl~AtqlVlk 73 (236)
.+|||-|.+-+.++ ..|-|-++..|.-||+.|+......+
T Consensus 86 ~~~~fsi~~~~~~e~ldl~a~s~~~a~~wV~gl~~l~s~~~ 126 (746)
T KOG0169|consen 86 EDRCFSIIFKDRYESLDLIANSKEDANIWVSGLRKLISRSK 126 (746)
T ss_pred cceeEEEEeccccccccccCCCHHHHHHHhhhHHHHHhccc
Confidence 47999999955444 89999999999999999988777666
No 160
>PF13700 DUF4158: Domain of unknown function (DUF4158)
Probab=22.12 E-value=4.2e+02 Score=21.24 Aligned_cols=93 Identities=28% Similarity=0.344 Sum_probs=65.7
Q ss_pred HHHHHHHhhhccccccCCCCCCCcHHHHHhhhccchHHHHHHHHHhhhhhhhHHHHHHHH-------HHHHHHHHHHHhh
Q 041344 114 AMQISLRNALGTMTNRITDGPMDDLSIMKETLRVKDEELQNLARDLRARDSTIRDIADKL-------SETAEAAEAAASA 186 (236)
Q Consensus 114 aMqiS~r~alg~~~n~~~~g~~Ddl~imkEtLrVKDeEl~~LardlraRD~tIkeiadkL-------seTAeAAEaAAsa 186 (236)
++|+..-.+.|.......+-|-+++..+.+-|.+..+++......=++|..-.++|-+.| +.-....+.+...
T Consensus 48 alqL~~fr~~g~f~~~~~~~p~~~i~~va~ql~~~~~~~~~y~~r~~T~~~h~~~I~~~lg~r~~~~~~~~~L~~~l~~~ 127 (166)
T PF13700_consen 48 ALQLGYFRALGRFPDDPEDIPKADIEYVAKQLGLPPSDLSSYAQRSRTRYRHRAEIREYLGYRPFDESDRAELEEWLREA 127 (166)
T ss_pred HHHHHHHhcccccccccccCCHHHHHHHHHHhCCchHHHHhhhhhhhHHHHHHHHHHHHhCcccCchhHHHHHHHHHHHH
Confidence 558888888899888888889999999999999999998888864455555556665554 1234445555666
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 041344 187 AHTMDEQRRIACAEIERINK 206 (236)
Q Consensus 187 aH~~de~r~~~~sEierL~~ 206 (236)
|...+....++-.=++.|++
T Consensus 128 a~~~~~~~~l~~~~~~~L~~ 147 (166)
T PF13700_consen 128 ARTTDDPDDLFNALIEWLRQ 147 (166)
T ss_pred HHHhCCHHHHHHHHHHHHHH
Confidence 66666666655555555554
No 161
>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]
Probab=22.11 E-value=1.3e+02 Score=31.29 Aligned_cols=45 Identities=31% Similarity=0.508 Sum_probs=37.1
Q ss_pred ccceeEEeeeccccceeeeecChhHHHHHHHHHHHHHHHHHHHHHHhh
Q 041344 33 YDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKEAVN 80 (236)
Q Consensus 33 YDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~AtqlVlkAHKEAvn 80 (236)
+.-+||=|.+ .+|.|-|-||.-.--.+|++.|..+ ++.++..+.-
T Consensus 333 drr~CF~iiS-~tks~~lQAes~~d~~~Wi~~i~ns--i~s~l~~~~~ 377 (785)
T KOG0521|consen 333 DRRFCFEIIS-PTKSYLLQAESEKDCQDWISALQNS--ILSALNSAFL 377 (785)
T ss_pred cceeeEEEec-CCcceEEecCchhHHHHHHHHHHHH--HHHHHhccCc
Confidence 6778999999 6789999999999999999999765 4566665544
No 162
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=22.08 E-value=6.1e+02 Score=27.26 Aligned_cols=73 Identities=11% Similarity=0.119 Sum_probs=34.3
Q ss_pred hHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhh
Q 041344 149 DEELQNLARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTKQLETCVLKVNFSQ 223 (236)
Q Consensus 149 DeEl~~LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~~q~~~~~l~lk~~~ 223 (236)
+++|..+-+.|..-..+|.+|...+.+..+.-...-......+..++.+-..|+.++ ++++++....+|.+.+
T Consensus 969 ~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~--~~~~l~el~~eI~~l~ 1041 (1311)
T TIGR00606 969 DDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRK--RENELKEVEEELKQHL 1041 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 334444444444444455555555555544444444455555555555555555443 3333333334444333
No 163
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=21.95 E-value=4.4e+02 Score=21.45 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=25.5
Q ss_pred CCcHHHHHhhhccchHHHHHHHHHhhh----hhhhHHHHHH
Q 041344 135 MDDLSIMKETLRVKDEELQNLARDLRA----RDSTIRDIAD 171 (236)
Q Consensus 135 ~Ddl~imkEtLrVKDeEl~~Lardlra----RD~tIkeiad 171 (236)
+--+.-|.=+||-++.|++.|-..+.. ||..=.||..
T Consensus 15 ~~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~ 55 (120)
T PF12325_consen 15 VQLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVK 55 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334556777899999999988777755 5555555544
No 164
>PF07704 PSK_trans_fac: Rv0623-like transcription factor; InterPro: IPR011660 This entry represents the Rv0623 (P96913 from SWISSPROT)-like group of transcription factors associated with the PSK operon [].
Probab=21.93 E-value=67 Score=24.07 Aligned_cols=19 Identities=42% Similarity=0.628 Sum_probs=16.1
Q ss_pred hccchHHHHHHHHHhhhhh
Q 041344 145 LRVKDEELQNLARDLRARD 163 (236)
Q Consensus 145 LrVKDeEl~~LardlraRD 163 (236)
|-+||+|.+.||+.|-.+-
T Consensus 3 L~Ikd~ev~~LareLA~~t 21 (82)
T PF07704_consen 3 LNIKDPEVDRLARELARLT 21 (82)
T ss_pred CCcCCHHHHHHHHHHHHHH
Confidence 6799999999999887653
No 165
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=21.86 E-value=6.6e+02 Score=23.47 Aligned_cols=63 Identities=17% Similarity=0.131 Sum_probs=25.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhHHHHH---HHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhc
Q 041344 165 TIRDIADKLSETAEAAEAAASAAHTMDEQRR---IACAEIERINKESTKQLETCVLKVNFSQLFCG 227 (236)
Q Consensus 165 tIkeiadkLseTAeAAEaAAsaaH~~de~r~---~~~sEierL~~~~~~q~~~~~l~lk~~~~~~~ 227 (236)
.+.+|+....|.++..+.-+.+...|+..=+ ....|+...-.++..+.+.-...+..|.+.-+
T Consensus 453 ~~~~i~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~~~~~a~~l~~~a~~L~~~v~~fk~~~~ 518 (553)
T PRK15048 453 IMGEIASASDEQSRGIDQVALAVSEMDRVTQQNASLVQESAAAAAALEEQASRLTQAVSAFRLAAS 518 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 3444444444444444444333333333222 22233333444444444444444444544433
No 166
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=21.69 E-value=3.4e+02 Score=20.08 Aligned_cols=39 Identities=21% Similarity=0.396 Sum_probs=21.1
Q ss_pred HHhhhccchHHHHHHH---HHhhhhhhhHHHHHHHHHHHHHH
Q 041344 141 MKETLRVKDEELQNLA---RDLRARDSTIRDIADKLSETAEA 179 (236)
Q Consensus 141 mkEtLrVKDeEl~~La---rdlraRD~tIkeiadkLseTAeA 179 (236)
|...|+=||+.|.+|- ..|.....-...+-.||......
T Consensus 3 l~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e 44 (74)
T PF12329_consen 3 LEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKE 44 (74)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3456777888887776 33444444344444444444333
No 167
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=21.66 E-value=1.6e+02 Score=20.44 Aligned_cols=37 Identities=30% Similarity=0.603 Sum_probs=25.2
Q ss_pred CCcceeEEeec----CceeeeeccccCCCCCccceeEEeeecc
Q 041344 6 PTVKGTITFDE----NSTIAISPVNFHGLPKYDGCCFYIGTPQ 44 (236)
Q Consensus 6 ~~~kG~I~fDa----~STitiSPvNf~g~~kYDgCCfyIgtpq 44 (236)
+..+|.+.|.. +.+++|+.+.+.-...| .|..+..|.
T Consensus 46 ~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y--~C~v~~~~~ 86 (98)
T cd05718 46 PSYEGRVSFLNSSLEDATISISNLRLEDEGNY--ICEFATFPQ 86 (98)
T ss_pred cCcCceEEEeCCCCCceEEEEccCCcccCEEE--EEEEEeCCC
Confidence 44588888874 67899998877766555 455544454
No 168
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=21.43 E-value=4.4e+02 Score=21.25 Aligned_cols=56 Identities=23% Similarity=0.207 Sum_probs=28.0
Q ss_pred HHHHHHHHhhhhhhh--HHHHHHHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHHHH
Q 041344 151 ELQNLARDLRARDST--IRDIADKLSETAEAAEAAASAA-HTMDEQRRIACAEIERINK 206 (236)
Q Consensus 151 El~~LardlraRD~t--IkeiadkLseTAeAAEaAAsaa-H~~de~r~~~~sEierL~~ 206 (236)
||...-+.+..++.. .-+|+++..+.-+.-|++-+.. |...+++...-.+|.++++
T Consensus 75 ElE~~~~~i~~~~~~~e~~~~a~~~~~l~~~Le~ae~~~~~~~~~~~~~~e~~~~~~~~ 133 (139)
T PF13935_consen 75 ELERAQQRIAELEQECENEDIALDVQKLRVELEAAEKRIAAELAEQAEAYEGEIADYAK 133 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 344444445555544 4445544444444444443333 5666666655555555554
No 169
>PRK13848 conjugal transfer protein TraC; Provisional
Probab=21.14 E-value=1.2e+02 Score=24.92 Aligned_cols=34 Identities=15% Similarity=0.146 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcc
Q 041344 195 RIACAEIERINKESTKQLETCVLKVNFSQLFCGL 228 (236)
Q Consensus 195 ~~~~sEierL~~~~~~q~~~~~l~lk~~~~~~~~ 228 (236)
..+..||++|+.++........-++-..-+++||
T Consensus 6 s~I~~eI~kLqe~lk~~e~keAERigRiAlKAGL 39 (98)
T PRK13848 6 SKIREEIAKLQEQLKQAETREAERIGRIALKAGL 39 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 3456777777776665555555555555566665
No 170
>KOG3828 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.71 E-value=53 Score=32.58 Aligned_cols=59 Identities=15% Similarity=0.246 Sum_probs=49.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 041344 159 LRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTKQLETCVL 217 (236)
Q Consensus 159 lraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~~q~~~~~l 217 (236)
-|+||----.+-++++|+-.|--.-++-.|.---.=-...+|||-||.|..++++++..
T Consensus 194 aksrd~~~~~~~~~k~~~~~a~~~~~~p~HsC~~sP~~IR~EVe~Lk~Dfn~R~Kevif 252 (457)
T KOG3828|consen 194 AKSRDILFSLVEERKSESPPAQIDLESPTHSCSLSPALIREEVEVLKDDFNLRVKEVIF 252 (457)
T ss_pred hhhccchHHHHHHHHhhCCcccCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899988999999999988876667888887666778889999999999999987653
No 171
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=20.69 E-value=72 Score=26.82 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHH
Q 041344 150 EELQNLARDLRARDSTIRDIADKLS 174 (236)
Q Consensus 150 eEl~~LardlraRD~tIkeiadkLs 174 (236)
|||-+=|++||+|..+..||||.|.
T Consensus 5 ~~l~~~a~~l~~~~~~~~~ia~el~ 29 (200)
T PRK02277 5 EELIEKAAELKNKGLSTGEIADELN 29 (200)
T ss_pred HHHHHHHHHHHHcCCChhhhhhhhc
Confidence 6888889999999999999999774
No 172
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=20.62 E-value=1.2e+02 Score=25.39 Aligned_cols=30 Identities=30% Similarity=0.512 Sum_probs=21.5
Q ss_pred hHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 041344 149 DEELQNLARDLRARDSTIRDIADKLSETAE 178 (236)
Q Consensus 149 DeEl~~LardlraRD~tIkeiadkLseTAe 178 (236)
..+|++|-..+.++|.-|++|...|.+.-.
T Consensus 28 ~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~ 57 (188)
T PF10018_consen 28 QARIQQLRAEIEELDEQIRDILKQLKEARK 57 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777788888887777776543
No 173
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=20.45 E-value=1.4e+02 Score=21.63 Aligned_cols=45 Identities=22% Similarity=0.402 Sum_probs=29.7
Q ss_pred CCCcceeEEeecC-ceeeeeccccCCCCCccceeEEe---eeccccceeee
Q 041344 5 EPTVKGTITFDEN-STIAISPVNFHGLPKYDGCCFYI---GTPQKKDYFLC 51 (236)
Q Consensus 5 e~~~kG~I~fDa~-STitiSPvNf~g~~kYDgCCfyI---gtpqkK~yfLc 51 (236)
++..+|.+.||.+ .+++|+++-..-..-| .|-.+ |.+..++++|.
T Consensus 47 ~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y--~c~v~~~~~~~~~~~f~L~ 95 (97)
T cd05775 47 DPSYKERVNFSQNDYSLQISNLKMEDAGSY--RAEINTKNGVTITKEFTLH 95 (97)
T ss_pred CCCceeeEEecCCceeEEECCCchHHCEEE--EEEEEcCCCCeEEEEEEEE
Confidence 4456788888875 8899988866555555 45544 44555667664
No 174
>PRK12687 flagellin; Reviewed
Probab=20.34 E-value=6.6e+02 Score=22.86 Aligned_cols=105 Identities=15% Similarity=0.179 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHH-HhhhccccccCCCCCCCcHHHHHhhhccchHHHHHHHHHh-------hhhhhhHHHH----HH
Q 041344 104 AQECSKEIEAAMQISL-RNALGTMTNRITDGPMDDLSIMKETLRVKDEELQNLARDL-------RARDSTIRDI----AD 171 (236)
Q Consensus 104 a~Ea~keieaaMqiS~-r~alg~~~n~~~~g~~Ddl~imkEtLrVKDeEl~~Lardl-------raRD~tIkei----ad 171 (236)
++...+.+...|.-++ |-+.|...|++.|.|.--. .-+.||-.-..+++..+.+ ..=|.-+.++ -|
T Consensus 13 a~~~L~~~~~~l~~~~~rlSTG~rIn~asDdpa~~~--ia~~l~s~~~~l~q~~~n~~~g~s~l~ta~~al~~i~~~~~~ 90 (311)
T PRK12687 13 ALQTLRNVSSSLATTQNRISTGYRVATASDNSAYWS--IATTMRSDNEALSAVSDALGLGAATVDTMYTALTSVVGDSKS 90 (311)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCccCCccccHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4455555555555554 3477888898887665433 3455665555666555543 3455556666 57
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 041344 172 KLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTKQLET 214 (236)
Q Consensus 172 kLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~~q~~~ 214 (236)
-|...-|-+-.|+... ..|..+-.||+.|.+++.+-.+.
T Consensus 91 ~L~r~relavqA~n~~----~dr~~i~~Ei~~L~~~i~~ia~~ 129 (311)
T PRK12687 91 GLTALKAKLVAAREPG----IDRTKIQSEITAIQNDLKNTAGL 129 (311)
T ss_pred HHHHHHHHHHHhcCCh----hhHHHHHHHHHHHHHHHHHHHHh
Confidence 7777777777776643 47999999999999999887765
No 175
>COG3415 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=20.19 E-value=1.2e+02 Score=25.38 Aligned_cols=29 Identities=28% Similarity=0.611 Sum_probs=25.9
Q ss_pred ccchHHHHHHHHHhhhhhhhHHHHHHHHH
Q 041344 146 RVKDEELQNLARDLRARDSTIRDIADKLS 174 (236)
Q Consensus 146 rVKDeEl~~LardlraRD~tIkeiadkLs 174 (236)
++.+++++.|...++.+|-|.+++.+.|.
T Consensus 63 kl~~~q~~~l~e~~~~k~wTl~~~~~~l~ 91 (138)
T COG3415 63 KLSEEQLEILLERLREKDWTLKELVEELG 91 (138)
T ss_pred ccCHHHHHHHHHHHhcccchHHHHHHHHh
Confidence 57789999999999999999999988765
No 176
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=20.18 E-value=6.4e+02 Score=27.81 Aligned_cols=72 Identities=13% Similarity=0.139 Sum_probs=47.6
Q ss_pred HHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhh
Q 041344 152 LQNLARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTKQLETCVLKVNFSQ 223 (236)
Q Consensus 152 l~~LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~~q~~~~~l~lk~~~ 223 (236)
.-.|-+-.+.|+.+++-|-|+|-|..---|+--+-..+.|-|-.++..++-.+.-+.++-.+....+||+-|
T Consensus 530 ~s~L~aa~~~ke~irq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~~q~lake~~yk~e~d~~ke~e 601 (1118)
T KOG1029|consen 530 KSELEAARRKKELIRQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVNSQQLAKEELYKNERDKLKEAE 601 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555667777777777777777766666666666677777777766666655555555666666666555
No 177
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=20.03 E-value=70 Score=24.38 Aligned_cols=27 Identities=26% Similarity=0.669 Sum_probs=16.5
Q ss_pred eeeeeccccCCCCCc---cceeEEeeeccc
Q 041344 19 TIAISPVNFHGLPKY---DGCCFYIGTPQK 45 (236)
Q Consensus 19 TitiSPvNf~g~~kY---DgCCfyIgtpqk 45 (236)
++.|.-+-++|.|.+ .||+-||-.-+.
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I~~~ 34 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEIYNG 34 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEEEET
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEEECC
Confidence 455555666666655 489999864433
No 178
>PRK10884 SH3 domain-containing protein; Provisional
Probab=20.01 E-value=6e+02 Score=22.24 Aligned_cols=56 Identities=9% Similarity=0.160 Sum_probs=0.0
Q ss_pred hHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 041344 149 DEELQNLARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTKQ 211 (236)
Q Consensus 149 DeEl~~LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~~q 211 (236)
+++...+.+.+..++..|.+|-....+..+.-+. .-.+.+.+-.|.++++++.+.+
T Consensus 117 ~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~-------~~~~~~~l~~~~~~~~~~~~~~ 172 (206)
T PRK10884 117 NQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIV-------AQKKVDAANLQLDDKQRTIIMQ 172 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Done!