Query 041344
Match_columns 236
No_of_seqs 20 out of 22
Neff 2.0
Searched_HMMs 29240
Date Mon Mar 25 10:10:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041344.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041344hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x1g_A Pleckstrin 2; PH domain 98.2 2.6E-06 8.9E-11 61.0 6.3 62 4-68 56-122 (129)
2 2dn6_A KIAA0640 protein; PH do 98.2 5.8E-06 2E-10 57.7 7.7 72 3-83 42-113 (115)
3 3aj4_A Pleckstrin homology dom 98.2 3.1E-06 1.1E-10 59.4 6.2 65 4-69 41-110 (112)
4 1u5d_A SKAP55, SRC kinase-asso 98.2 6.8E-06 2.3E-10 56.1 7.4 64 3-69 41-104 (108)
5 3rcp_A Pleckstrin homology dom 98.1 2.9E-06 9.9E-11 58.8 5.2 53 7-68 39-91 (103)
6 1wgq_A FYVE, rhogef and PH dom 98.1 7.5E-06 2.6E-10 57.4 7.1 60 3-68 42-101 (109)
7 2yry_A Pleckstrin homology dom 98.1 8.5E-06 2.9E-10 57.6 7.4 63 3-69 57-119 (122)
8 1v5u_A SBF1, SET binding facto 98.1 4E-06 1.4E-10 58.7 5.5 63 3-67 44-108 (117)
9 1x05_A Pleckstrin; PH domain, 98.1 1.1E-05 3.8E-10 57.9 7.8 65 3-68 54-118 (129)
10 2d9x_A Oxysterol binding prote 98.1 1.1E-05 3.6E-10 58.1 7.3 60 7-78 50-109 (120)
11 2i5f_A Pleckstrin; PH domain, 98.1 1.1E-05 3.9E-10 55.7 7.1 64 4-68 44-107 (109)
12 2d9y_A Pleckstrin homology dom 98.1 1E-05 3.6E-10 56.5 7.0 62 3-68 46-107 (117)
13 2cod_A Centaurin-delta 1; ARF 98.0 4.2E-06 1.4E-10 59.2 4.5 56 3-69 43-98 (115)
14 2dkp_A Pleckstrin homology dom 98.0 1.3E-05 4.4E-10 57.1 6.5 63 3-69 56-118 (128)
15 1v88_A Oxysterol binding prote 98.0 1.5E-05 5.2E-10 60.6 7.2 59 4-69 42-123 (130)
16 2dhk_A TBC1 domain family memb 98.0 2.4E-05 8.3E-10 56.5 7.9 58 3-69 46-103 (119)
17 1fao_A Dual adaptor of phospho 98.0 2.5E-05 8.5E-10 55.8 7.4 61 3-70 52-112 (126)
18 1pls_A Pleckstrin homology dom 97.9 2.5E-05 8.5E-10 54.9 6.9 62 3-69 39-100 (113)
19 2lul_A Tyrosine-protein kinase 97.9 2.5E-05 8.4E-10 60.7 7.5 62 6-68 58-119 (164)
20 1v89_A Hypothetical protein KI 97.9 2.5E-05 8.5E-10 54.3 6.8 63 3-69 42-111 (118)
21 1eaz_A Tandem PH domain contai 97.9 2.3E-05 7.9E-10 55.3 6.1 63 3-70 48-111 (125)
22 2rlo_A Centaurin-gamma 1; spli 97.9 1.7E-05 5.7E-10 58.0 5.4 37 33-69 87-123 (128)
23 2d9v_A Pleckstrin homology dom 97.9 4.2E-05 1.4E-09 56.4 7.4 65 4-69 44-113 (130)
24 1u5f_A SRC-associated adaptor 97.9 3.5E-05 1.2E-09 57.2 6.9 64 3-69 55-118 (148)
25 1wg7_A Dedicator of cytokinesi 97.9 2E-05 7E-10 58.2 5.6 57 5-68 66-122 (150)
26 1upq_A PEPP1; PH domain, phosp 97.8 5.8E-05 2E-09 53.3 7.5 63 3-69 46-108 (123)
27 1v5p_A Pleckstrin homology dom 97.8 6.2E-05 2.1E-09 56.8 6.9 61 4-68 58-118 (126)
28 2y7b_A Actin-binding protein a 97.8 7.6E-05 2.6E-09 53.6 6.9 64 6-73 47-131 (134)
29 1u5e_A SRC-associated adaptor 97.7 7.5E-05 2.6E-09 60.7 7.1 64 3-69 144-207 (211)
30 3tca_A Amyloid beta A4 precurs 97.6 0.00023 7.8E-09 57.3 8.7 76 3-80 202-289 (291)
31 1x1f_A Signal-transducing adap 97.6 0.00013 4.4E-09 57.3 6.5 60 3-68 52-111 (149)
32 1fgy_A GRP1; PH domain, signal 97.6 0.00027 9.2E-09 49.8 7.1 60 3-69 39-119 (127)
33 2rsg_A Collagen type IV alpha- 97.5 0.00015 5.2E-09 49.7 5.0 53 6-68 40-92 (94)
34 1unq_A RAC-alpha serine/threon 97.5 6.1E-05 2.1E-09 53.9 3.1 37 34-70 71-110 (125)
35 2cof_A Protein KIAA1914; PH do 97.4 0.00049 1.7E-08 48.4 7.4 56 7-68 43-99 (107)
36 3cxb_B Pleckstrin homology dom 97.4 0.00063 2.1E-08 49.3 7.8 61 4-68 39-99 (112)
37 1btn_A Beta-spectrin; signal t 97.4 0.0003 1E-08 48.3 5.4 34 35-68 73-106 (106)
38 2j59_M RHO-GTPase activating p 97.3 0.00044 1.5E-08 52.3 6.2 58 6-69 52-110 (168)
39 4a6h_A Phosphatidylinositol 4, 97.3 0.0007 2.4E-08 51.2 6.7 64 4-68 44-116 (120)
40 2p0d_A RHO GTPase-activating p 97.2 0.00082 2.8E-08 50.0 7.0 60 4-69 64-123 (129)
41 1btk_A Bruton'S tyrosine kinas 97.2 0.00033 1.1E-08 55.1 4.7 65 4-69 47-131 (169)
42 3lju_X ARF-GAP with dual PH do 97.2 0.00056 1.9E-08 60.5 6.6 62 4-68 305-370 (386)
43 3tfm_A Myosin X; split PH doma 97.1 0.00098 3.4E-08 54.2 7.0 57 4-69 98-154 (228)
44 3a8p_A T-lymphoma invasion and 97.1 0.0015 5.3E-08 55.0 8.0 62 4-71 64-125 (263)
45 1wjm_A Beta-spectrin III; PH d 97.0 0.0014 4.7E-08 47.0 5.9 35 35-69 82-116 (123)
46 2da0_A 130-kDa phosphatidylino 97.0 0.0021 7.1E-08 45.8 6.8 32 36-68 68-99 (114)
47 1qqg_A IRS-1, insulin receptor 96.9 0.0016 5.5E-08 55.1 6.5 66 6-78 55-120 (264)
48 2r09_A Cytohesin-3; autoinhibi 96.7 0.0037 1.3E-07 54.1 7.3 60 3-69 247-327 (347)
49 1dro_A Beta-spectrin; cytoskel 96.7 0.00055 1.9E-08 49.5 1.8 34 35-68 84-117 (122)
50 2coc_A FYVE, rhogef and PH dom 96.7 0.0046 1.6E-07 46.3 6.6 60 3-68 44-104 (112)
51 2w2x_D 1-phosphatidylinositol- 96.5 0.0055 1.9E-07 45.1 6.1 57 7-68 59-117 (124)
52 2q13_A DCC-interacting protein 96.5 0.005 1.7E-07 53.0 6.5 57 5-68 316-373 (385)
53 3lju_X ARF-GAP with dual PH do 96.2 0.0055 1.9E-07 54.2 5.3 61 3-69 182-245 (386)
54 4h8s_A DCC-interacting protein 95.9 0.0084 2.9E-07 51.9 5.2 58 4-68 338-396 (407)
55 3pp2_A RHO GTPase-activating p 95.8 0.026 8.8E-07 41.6 6.6 34 35-68 88-121 (124)
56 1w1g_A HPDK1, 3-phosphoinositi 95.6 0.014 4.8E-07 47.8 5.1 51 7-69 88-138 (151)
57 1wi1_A Calcium-dependent activ 95.5 0.046 1.6E-06 43.2 7.4 70 2-78 46-116 (126)
58 2d9w_A Docking protein 2; PH d 95.5 0.025 8.4E-07 45.6 5.8 55 7-66 62-117 (127)
59 2rov_A RHO-associated protein 94.7 0.076 2.6E-06 39.8 6.4 60 7-68 45-113 (117)
60 3zbh_A ESXA; unknown function, 93.3 1.3 4.3E-05 30.3 10.0 81 141-221 3-88 (99)
61 1mai_A Phospholipase C delta-1 93.3 0.095 3.2E-06 39.5 4.4 60 8-68 54-119 (131)
62 3hk0_A Growth factor receptor- 92.8 0.11 3.9E-06 44.5 4.8 35 36-70 201-240 (256)
63 4gmv_A RAS-associated and plec 92.8 0.11 3.6E-06 45.4 4.6 34 37-70 228-266 (281)
64 1dyn_A Dynamin; signal transdu 92.5 0.18 6E-06 40.3 5.2 60 4-68 49-116 (125)
65 2dtc_A RAL guanine nucleotide 92.4 0.14 4.9E-06 39.9 4.4 56 6-68 54-110 (126)
66 3gwk_C SAG1039, putative uncha 90.3 3.2 0.00011 28.6 9.7 81 141-221 2-87 (98)
67 4ejn_A RAC-alpha serine/threon 88.2 0.43 1.5E-05 40.5 4.1 63 4-69 42-107 (446)
68 4i0x_B ESAT-6-like protein MAB 88.0 4.3 0.00015 29.0 8.8 81 140-220 4-91 (103)
69 3a8n_A TIAM-1, T-lymphoma inva 88.0 0.41 1.4E-05 41.7 3.9 37 36-72 90-126 (279)
70 3nmd_A CGMP dependent protein 87.6 0.78 2.7E-05 34.0 4.6 35 134-175 17-51 (72)
71 4ioe_A Secreted protein ESXB; 85.1 6.8 0.00023 26.5 8.2 39 141-179 3-41 (93)
72 1dbh_A Protein (human SOS 1); 85.0 1.2 4.2E-05 37.2 5.1 36 34-69 313-348 (354)
73 2rgn_B RHOA/RAC/CDC42 exchange 82.8 2.4 8.2E-05 35.9 6.1 38 32-69 276-317 (354)
74 1nty_A Triple functional domai 80.1 3.6 0.00012 33.9 6.1 49 20-68 254-306 (311)
75 1kz7_A Guanine nucleotide exch 79.9 5 0.00017 33.9 7.1 39 30-68 284-323 (353)
76 1xcg_A PDZ-rhogef, RHO guanine 77.8 2.8 9.4E-05 35.1 4.8 36 34-69 326-365 (368)
77 2vs0_A Virulence factor ESXA; 76.9 14 0.00049 24.8 8.9 79 143-221 2-85 (97)
78 3tfm_A Myosin X; split PH doma 74.2 7 0.00024 31.5 6.1 52 8-66 174-225 (228)
79 1zc3_B Exocyst complex protein 71.9 5.3 0.00018 29.8 4.5 34 35-69 73-106 (113)
80 1txd_A RHO guanine nucleotide 70.9 7.5 0.00026 32.9 5.8 40 34-73 330-372 (385)
81 1fho_A UNC-89; pleckstrin homo 70.6 2.6 9.1E-05 32.2 2.7 56 16-71 53-113 (119)
82 2pz1_A RHO guanine nucleotide 69.9 15 0.0005 32.0 7.6 37 35-71 404-441 (466)
83 1wt6_A Myotonin-protein kinase 68.1 30 0.001 26.2 7.9 56 151-210 14-70 (81)
84 2dfk_A Collybistin II; DH doma 64.5 9.9 0.00034 32.8 5.4 39 35-73 327-366 (402)
85 3fav_B ESAT-6, 6 kDa early sec 64.1 23 0.00079 24.0 6.2 74 145-218 3-81 (94)
86 2ys3_A UNC-112-related protein 61.3 9.4 0.00032 30.8 4.3 54 7-66 52-108 (137)
87 3qr0_A Phospholipase C-beta (P 59.9 5.9 0.0002 39.1 3.5 83 31-117 99-197 (816)
88 3t06_A PDZ-rhogef, RHO guanine 58.0 9.9 0.00034 32.4 4.1 40 32-71 366-409 (418)
89 1ucu_A Phase 1 flagellin; flag 57.7 75 0.0025 29.2 10.1 101 109-214 18-128 (494)
90 3jzy_A Intersectin 2; C2 domai 54.8 2.6 8.8E-05 36.5 0.0 38 32-70 325-362 (510)
91 3fd4_A Glycoprotein GP42; C ty 53.6 2.4 8.1E-05 36.5 -0.4 13 32-45 78-90 (191)
92 2vrw_B P95VAV, VAV1, proto-onc 53.5 18 0.00063 30.8 5.1 37 35-71 299-336 (406)
93 1q06_A Transcriptional regulat 53.0 25 0.00086 26.5 5.3 61 147-207 39-101 (135)
94 3nmd_A CGMP dependent protein 52.1 9.6 0.00033 28.2 2.7 32 142-173 32-63 (72)
95 1foe_A T-lymphoma invasion and 51.4 23 0.0008 29.8 5.3 24 45-68 341-364 (377)
96 3k8w_A Flagellin homolog; flag 50.5 30 0.001 31.2 6.2 91 120-213 11-108 (326)
97 2z0q_A XPLN, RHO guanine nucle 49.5 20 0.0007 29.6 4.6 35 35-69 308-345 (346)
98 3mpx_A FYVE, rhogef and PH dom 48.8 23 0.00079 30.2 5.0 35 34-69 302-336 (434)
99 3ohm_B 1-phosphatidylinositol- 48.3 15 0.0005 36.7 4.2 37 31-67 96-136 (885)
100 3gpv_A Transcriptional regulat 48.2 39 0.0013 25.9 5.7 61 148-208 56-118 (148)
101 2zkm_X 1-phosphatidylinositol- 47.5 17 0.00057 35.5 4.3 37 32-68 93-133 (799)
102 3p6a_A RHO guanine nucleotide 47.1 11 0.00038 31.4 2.7 37 34-70 332-371 (377)
103 1y4m_A HERV-FRD_6P24.1 proviru 45.7 3.5 0.00012 29.1 -0.5 7 34-40 46-52 (53)
104 3odw_A RHO guanine nucleotide 44.9 22 0.00076 32.3 4.5 37 33-69 484-523 (536)
105 1zxa_A CGMP-dependent protein 44.8 13 0.00043 27.1 2.3 32 142-173 17-48 (67)
106 2vz4_A Tipal, HTH-type transcr 44.4 58 0.002 23.4 5.9 57 147-209 40-98 (108)
107 3gp4_A Transcriptional regulat 43.6 51 0.0017 25.2 5.7 58 149-206 43-102 (142)
108 1mof_A Moloney murine leukemia 43.6 4 0.00014 29.0 -0.5 7 34-40 48-54 (55)
109 3fav_A ESAT-6-like protein ESX 43.5 78 0.0027 21.8 6.9 80 144-223 4-88 (101)
110 3ky9_A Proto-oncogene VAV; cal 43.2 27 0.00092 31.7 4.8 36 35-70 471-507 (587)
111 3oja_B Anopheles plasmodium-re 39.4 2E+02 0.0067 25.3 10.2 20 191-210 536-555 (597)
112 1r8e_A Multidrug-efflux transp 39.3 53 0.0018 26.1 5.4 49 154-208 54-102 (278)
113 2zvf_A Alanyl-tRNA synthetase; 38.9 41 0.0014 25.5 4.5 51 158-211 8-58 (171)
114 2v0o_A FCHO2, FCH domain only 38.3 1.4E+02 0.005 23.4 8.6 20 150-169 101-120 (276)
115 1r8d_A Transcription activator 38.2 72 0.0025 22.8 5.5 56 147-208 41-98 (109)
116 3na7_A HP0958; flagellar bioge 34.3 1.9E+02 0.0066 23.7 8.7 59 149-207 17-75 (256)
117 3v47_C Flagellin; innate immun 34.2 1.2E+02 0.0042 28.1 7.7 56 157-213 32-87 (425)
118 1v61_A RAC/CDC42 guanine nucle 33.5 42 0.0014 26.1 3.9 34 35-68 91-124 (132)
119 2ykf_A Pdtas, probable sensor 39.5 9 0.00031 32.2 0.0 20 150-169 284-303 (305)
120 4ehp_B Catenin alpha-1; adhere 32.3 44 0.0015 26.3 3.8 49 169-217 34-82 (111)
121 3ksy_A SOS-1, SON of sevenless 32.0 63 0.0021 32.1 5.7 36 35-70 511-546 (1049)
122 3qwm_A Iqsec1, IQ motif and SE 31.8 69 0.0024 25.6 4.9 36 33-68 80-120 (140)
123 3es4_A Uncharacterized protein 31.3 36 0.0012 26.1 3.1 43 9-51 71-113 (116)
124 2zhg_A Redox-sensitive transcr 30.1 81 0.0028 24.4 5.0 61 147-207 49-112 (154)
125 1pgl_1 Bean POD mottle virus s 28.6 58 0.002 27.8 4.2 32 16-47 87-118 (185)
126 2lg1_A A-kinase anchor protein 27.8 1.4E+02 0.0049 23.6 6.2 39 34-72 133-174 (185)
127 4etp_A Kinesin-like protein KA 26.7 1.2E+02 0.0041 27.1 6.1 33 146-178 6-38 (403)
128 3pwx_A Putative flagellar HOOK 26.4 1.2E+02 0.004 25.0 5.6 55 159-214 37-91 (239)
129 1p3r_A Disabled homolog 2; PTB 26.3 99 0.0034 24.0 4.9 77 7-83 67-151 (160)
130 4h22_A Leucine-rich repeat fli 25.3 85 0.0029 24.6 4.3 18 192-209 51-68 (103)
131 2efr_A General control protein 24.6 2.8E+02 0.0096 22.5 8.5 30 163-192 76-105 (155)
132 1i84_S Smooth muscle myosin he 24.6 3.9E+02 0.013 26.7 9.8 42 143-184 857-898 (1184)
133 1ny7_1 Cowpea mosaic virus, sm 24.5 65 0.0022 27.6 3.8 33 15-47 85-117 (189)
134 3bas_A Myosin heavy chain, str 24.3 2E+02 0.0069 20.7 7.9 41 135-175 6-46 (89)
135 4egx_A Kinesin-like protein KI 24.1 1.5E+02 0.005 23.9 5.6 55 167-228 8-62 (184)
136 1q08_A Zn(II)-responsive regul 23.2 1.8E+02 0.0063 19.8 5.8 53 155-207 8-61 (99)
137 1h8b_B Titin, ZR7; structural 23.0 25 0.00086 25.0 0.8 13 88-100 10-22 (53)
138 3fx7_A Putative uncharacterize 22.6 2.6E+02 0.0088 21.3 7.0 68 147-220 6-73 (94)
139 2x48_A CAG38821; archeal virus 22.0 41 0.0014 20.6 1.6 20 155-174 23-42 (55)
140 1io1_A Phase 1 flagellin; beta 22.0 2.5E+02 0.0084 25.0 7.2 55 158-213 21-75 (398)
141 1x4t_A Hypothetical protein LO 21.7 56 0.0019 25.1 2.5 51 150-208 18-68 (92)
142 2efk_A CDC42-interacting prote 21.4 3.1E+02 0.011 21.8 9.3 58 150-210 98-155 (301)
143 4g2k_A General control protein 21.1 16 0.00053 29.7 -0.7 8 34-41 99-106 (125)
144 2eqe_A Tumor necrosis factor, 21.1 19 0.00064 25.2 -0.2 12 37-48 23-34 (48)
145 3pmp_A Cyclophilin A; peptidyl 20.3 8.1 0.00028 30.5 -2.4 37 7-43 14-57 (164)
146 1z87_A Alpha-1-syntrophin; pro 20.3 1.5E+02 0.0051 25.1 5.2 43 26-69 218-261 (263)
147 2d4x_A Flagellar HOOK-associat 20.2 2.9E+02 0.0099 22.1 6.7 55 159-214 35-89 (248)
No 1
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.22 E-value=2.6e-06 Score=60.98 Aligned_cols=62 Identities=18% Similarity=0.366 Sum_probs=47.5
Q ss_pred CCCCcceeEEeecCceeeeeccccCCCCC---c--cceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344 4 NEPTVKGTITFDENSTIAISPVNFHGLPK---Y--DGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 4 ~e~~~kG~I~fDa~STitiSPvNf~g~~k---Y--DgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At 68 (236)
.+..++|.|.++..+-+.+.+. +.|. . ..+||.|-||.++.|+|+|+|+.....|+..|+.+
T Consensus 56 ~~~~~~g~i~L~~~~v~~~~~~---~~p~~~~~~~~~~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~ 122 (129)
T 1x1g_A 56 EENRPVGGFSLRGSLVSALEDN---GVPTGVKGNVQGNLFKVITKDDTHYYIQASSKAERAEWIEAIKKL 122 (129)
T ss_dssp CCSSCSCCEESTTCCCEECCSS---SSCSSCSSCCCSSCEEECCTTCCCEEECCSSHHHHHHHHHHHHHH
T ss_pred cCCccceEEECcCCEEEEeCCC---CCcccccCCCCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHH
Confidence 4678999999987543333332 2221 1 46899999999889999999999999999999754
No 2
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.20 E-value=5.8e-06 Score=57.70 Aligned_cols=72 Identities=21% Similarity=0.343 Sum_probs=54.5
Q ss_pred CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 041344 3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKEAVNSL 82 (236)
Q Consensus 3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~AtqlVlkAHKEAvnsl 82 (236)
.+|..++|+|.++....|...|-. ....+||.|-|| .+.|+|+|||+.....|+..|+.+. +.+++...++
T Consensus 42 ~~~~~~~g~i~L~~~~~v~~~~~~-----~~~~~~F~i~~~-~r~~~l~a~s~~e~~~Wi~ai~~~~---~~~~~~~~~~ 112 (115)
T 2dn6_A 42 EDLKDKKGDILLDENCCVESLPDK-----DGKKCLFLVKCF-DKTFEISASDKKKKQEWIQAIHSTI---HLLKLGSSGP 112 (115)
T ss_dssp TTCSSEEEEECCCTTCEEEEECCC-----TTCCSEEEEECS-SCEEEEECSSHHHHHHHHHHHHHHH---HHHHHSCCCC
T ss_pred CCCcccCcEEEecCcEEEEECCCC-----CCCeeEEEEEeC-CCEEEEEcCCHHHHHHHHHHHHHHH---HHHhcCCCCC
Confidence 356788999999988888776532 223589999888 4679999999999999999887653 4566655544
Q ss_pred C
Q 041344 83 S 83 (236)
Q Consensus 83 s 83 (236)
+
T Consensus 113 ~ 113 (115)
T 2dn6_A 113 S 113 (115)
T ss_dssp C
T ss_pred C
Confidence 3
No 3
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=98.19 E-value=3.1e-06 Score=59.42 Aligned_cols=65 Identities=22% Similarity=0.290 Sum_probs=47.6
Q ss_pred CCCCcceeEEeecCceeeeeccc---c--CCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344 4 NEPTVKGTITFDENSTIAISPVN---F--HGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ 69 (236)
Q Consensus 4 ~e~~~kG~I~fDa~STitiSPvN---f--~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq 69 (236)
++..++|.|.+... +|.|.+.. . ....+-..+||.|-||..+.|||+|||+.....|+..|+.++
T Consensus 41 ~~~~~~g~i~l~~~-~i~l~~~~~v~~v~~~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~ 110 (112)
T 3aj4_A 41 TRQNIEDKVHMPMD-CINIRTGQECRDTQPPDGKSKDCMLQIVCRDGKTISLCAESTDDCLAWKFTLQDSR 110 (112)
T ss_dssp TCCSEEEEEEHHHH-EEEEEEGGGCCSCCCSTTCCGGGEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCcccccccc-ceeecccccccccCCCCCCCcCcEEEEEecCCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 45677888877654 34444221 1 112233368999999999999999999999999999998775
No 4
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=98.17 E-value=6.8e-06 Score=56.14 Aligned_cols=64 Identities=22% Similarity=0.417 Sum_probs=48.8
Q ss_pred CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344 3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ 69 (236)
Q Consensus 3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq 69 (236)
.++..++|.|.++..+ |.+.|.. ....-..+||.|-||..+.|+|+|+|+.....|+..|+.+.
T Consensus 41 ~~~~~~~g~i~L~~~~-v~~~~~~--~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~i 104 (108)
T 1u5d_A 41 EKSKQPKGTFLIKGYS-VRMAPHL--RRDSKKESCFELTSQDRRTYEFTATSPAEARDWVDQISFLL 104 (108)
T ss_dssp TTCSSCSEEEECTTCE-EEECGGG--CSSGGGGGEEEEECSSSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCEEEEecceE-EEeCCcc--ccccCCcceEEEEcCCCcEEEEECCCHHHHHHHHHHHHHHH
Confidence 3567899999997665 5444421 11222358999999998999999999999999999997654
No 5
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=98.15 E-value=2.9e-06 Score=58.80 Aligned_cols=53 Identities=17% Similarity=0.384 Sum_probs=44.0
Q ss_pred CcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344 7 TVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 7 ~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At 68 (236)
.++|.|.+. +.+|.+.|- +.+||.|-+|..+.|+|+|+|+.....|+..|+.+
T Consensus 39 ~~~g~i~L~-~~~v~~~~~--------~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a 91 (103)
T 3rcp_A 39 GSKGSIKMA-VCEIKVHSA--------DNTRMELIIPGEQHFYMKAVNAAERQRWLVALGSS 91 (103)
T ss_dssp CCSCEEEGG-GCEEECCTT--------CSSEEEEEETTTEEEEEECSSHHHHHHHHHHHHTT
T ss_pred CcccEEEee-eeEEEEcCC--------CCceEEEEeCCCCEEEEECCCHHHHHHHHHHHHHH
Confidence 489999994 556655442 57899999998899999999999999999988754
No 6
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=98.13 E-value=7.5e-06 Score=57.41 Aligned_cols=60 Identities=7% Similarity=0.128 Sum_probs=48.4
Q ss_pred CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344 3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At 68 (236)
..|..++|.|.++..+.+...|- .-..+||.|-||..+.|+|+|||+..+..|+..|+.+
T Consensus 42 ~~~~~~~~~i~L~~~~~~~~~~~------~~~~~~F~i~~~~~~~~~~~a~s~~e~~~Wi~al~~a 101 (109)
T 1wgq_A 42 SEDVAALESQPLLGFTVTLVKDE------NSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEG 101 (109)
T ss_dssp TTCSSCSEEEECSSEEEEECCCS------SCSSSEEEEEETTEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred CCcCccCceEECCCCEEEECCCC------CCCCcEEEEEeCCCeEEEEECCCHHHHHHHHHHHHHH
Confidence 35678899999987766654431 1135799999999999999999999999999999865
No 7
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.13 E-value=8.5e-06 Score=57.57 Aligned_cols=63 Identities=22% Similarity=0.404 Sum_probs=47.6
Q ss_pred CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344 3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ 69 (236)
Q Consensus 3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq 69 (236)
.+|..++|.|.++..+-..+.|..- .-..+||.|-++..+.|+|+|+|......|+..|+.+.
T Consensus 57 ~~~~~~~g~i~L~~~~v~~~~~~~~----~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~ 119 (122)
T 2yry_A 57 EKEESILGSIPLLSFRVAAVQPSDN----ISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAA 119 (122)
T ss_dssp TTCCSCCEEEESTTCCCEECCTTCS----CSSSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCcccEEEcCCCEEEEcCcccc----CCcccEEEEecCCCcEEEEEcCCHHHHHHHHHHHHHHH
Confidence 3567899999998765222223221 12248999999989999999999999999999997653
No 8
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=98.12 E-value=4e-06 Score=58.68 Aligned_cols=63 Identities=25% Similarity=0.466 Sum_probs=49.1
Q ss_pred CCCCCcceeEEeecCceeeeeccccCCCC--CccceeEEeeeccccceeeeecChhHHHHHHHHHHH
Q 041344 3 RNEPTVKGTITFDENSTIAISPVNFHGLP--KYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHA 67 (236)
Q Consensus 3 R~e~~~kG~I~fDa~STitiSPvNf~g~~--kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~A 67 (236)
.+|..++|.|.++..+.|...+. +.|.| .-..+||.|.|| .+.|+|||+|+.....|+..|+.
T Consensus 44 ~~~~~~~g~i~L~~~~~v~~~~~-~~~~~~~~~~~~~F~i~~~-~r~~~l~a~s~~e~~~Wi~al~~ 108 (117)
T 1v5u_A 44 RMDTECKGVIDLAEVEAVAPGTP-TIGAPKTVDEKAFFDVKTT-RRVYNFCAQDVPSAQQWVDRIQS 108 (117)
T ss_dssp SSCSSCCCEEEGGGEEEEECCCC-CTTSCSSSCTTTCEEEEES-SCEEEEECSSHHHHHHHHHHHHT
T ss_pred CCCCccceEEEccCcEEEeecCc-cccccccCCCCeEEEEECC-CceEEEECCCHHHHHHHHHHHHH
Confidence 35678999999988877765432 45555 344589999765 56899999999999999999865
No 9
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=98.11 E-value=1.1e-05 Score=57.87 Aligned_cols=65 Identities=22% Similarity=0.323 Sum_probs=46.9
Q ss_pred CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344 3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At 68 (236)
..+..++|+|.++..+.+.+.+. ......-..+||.|-||..+.|+|+|+|+.....|+..|+.+
T Consensus 54 ~~~~~~~g~i~L~~~~v~~~~~~-~~~~~~~~~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~al~~~ 118 (129)
T 1x05_A 54 AGAEDPLGAIHLRGCVVTSVESN-SNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA 118 (129)
T ss_dssp SCCSSCSEEEECTTCEEEECCCC-CCSSSCSSCSEEEEECTTCCCCEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCcceeEEEccCCEEEEccCC-ccccccCCCeEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHH
Confidence 35678999999987433333221 000001157899999998889999999999999999988654
No 10
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=1.1e-05 Score=58.11 Aligned_cols=60 Identities=28% Similarity=0.458 Sum_probs=47.3
Q ss_pred CcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHHHHHHHHHHH
Q 041344 7 TVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKEA 78 (236)
Q Consensus 7 ~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~AtqlVlkAHKEA 78 (236)
.++|.|.++..+ | .|. .-+.+||.|-||..+.|+|+|+|+.....|+..|+.+. +.|++.
T Consensus 50 ~~~g~I~L~~~~-v--~~~------~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~~---~~~~~~ 109 (120)
T 2d9x_A 50 KPRGTLQLAGAV-I--SPS------DEDSHTFTVNAASGEQYKLRATDAKERQHWVSRLQICT---QHHTEA 109 (120)
T ss_dssp CCSEEEECTTCC-E--ECC------SSSSSCEEECCSSSCCEEECCSSHHHHHHHHHHHHHHH---HHHHHH
T ss_pred CccceEEcceEE-E--Eec------CCCCCEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHH---HHhhhh
Confidence 689999998753 3 331 23579999999998999999999999999999997653 445444
No 11
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=98.08 E-value=1.1e-05 Score=55.71 Aligned_cols=64 Identities=22% Similarity=0.331 Sum_probs=45.2
Q ss_pred CCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344 4 NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 4 ~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At 68 (236)
++..++|.|.++..+.+.+.+. ..+...-..+||.|-||..+.|+|+|+|+.....|+..|+.+
T Consensus 44 ~~~~~~g~i~L~~~~v~~~~~~-~~~~~~~~~~~F~i~~~~~~~~~l~a~s~~e~~~Wi~ai~~~ 107 (109)
T 2i5f_A 44 GAEDPLGAIHLRGCVVTSVESN-SNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMA 107 (109)
T ss_dssp SCSSCSEEEECTTCEEEEECC---------CCSEEEEECTTCCEEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCccEEEECCCCEEEEccCC-cccccCCCceEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHH
Confidence 4677999999987432222211 000001156899999998888999999999999999999765
No 12
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.08 E-value=1e-05 Score=56.52 Aligned_cols=62 Identities=23% Similarity=0.411 Sum_probs=46.9
Q ss_pred CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344 3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At 68 (236)
.+|..++|.|.++..+-..+.|..- .-..+||.|-++..+.|+|+|+|+.....|+..|+.+
T Consensus 46 ~~~~~~~g~i~L~~~~v~~~~~~~~----~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~~ 107 (117)
T 2d9y_A 46 EKEESILGSIPLLSFRVAAVQPSDN----ISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEA 107 (117)
T ss_dssp TTCCSCCEEEECSSCEEEECCTTTT----CCCSSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHT
T ss_pred CCCCCcCCEEEeCCeEEEEcCcccc----CCCccEEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHH
Confidence 3567899999998765322333221 1224799999888899999999999999999999764
No 13
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.05 E-value=4.2e-06 Score=59.21 Aligned_cols=56 Identities=23% Similarity=0.336 Sum_probs=45.5
Q ss_pred CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344 3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ 69 (236)
Q Consensus 3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq 69 (236)
..+..++|.|.++..+.|...+ .+||.|-|| .+.|+|+|+|......|+..|+.+.
T Consensus 43 ~~~~~~~g~i~l~~~~~v~~~~----------~~~F~i~~~-~r~~~l~a~s~~e~~~Wi~~l~~~~ 98 (115)
T 2cod_A 43 EKEMYSKGIIPLSAISTVRVQG----------DNKFEVVTT-QRTFVFRVEKEEERNDWISILLNAL 98 (115)
T ss_dssp SCCSSCCCEEETTTEEEEEEET----------TTEEEEEES-SCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCcccCCEEECCcceEEEeCC----------CCEEEEEeC-CcEEEEECCCHHHHHHHHHHHHHHH
Confidence 3566899999998776555432 589999977 5789999999999999999998654
No 14
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=98.01 E-value=1.3e-05 Score=57.06 Aligned_cols=63 Identities=21% Similarity=0.415 Sum_probs=46.7
Q ss_pred CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344 3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ 69 (236)
Q Consensus 3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq 69 (236)
.+|..++|.|.++.. +|...+..-. .-..+||.|-+|..+.|+|+|||+.....|+..|+.+.
T Consensus 56 ~~~~~~~g~i~L~~~-~v~~~~~~~~---~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~ 118 (128)
T 2dkp_A 56 EKEEGILGSILLPSF-QIALLTSEDH---INRKYAFKAAHPNMRTYYFCTDTGKEMELWMKAMLDAA 118 (128)
T ss_dssp TTCCSEEEEECGGGS-EEEECCGGGC---CSSCSEEEEECSSSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCcccceEEEcCce-EEEEcCCccc---CCCCeEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence 356788999999643 4443322111 12247999999998999999999999999999997654
No 15
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=98.01 E-value=1.5e-05 Score=60.63 Aligned_cols=59 Identities=24% Similarity=0.401 Sum_probs=45.8
Q ss_pred CCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeecccc-----------------------ceeeeecChhHHHH
Q 041344 4 NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKK-----------------------DYFLCAETPGAARA 60 (236)
Q Consensus 4 ~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK-----------------------~yfLcAETp~aara 60 (236)
.|..++|+|.++..+.+ -. ..+.+++||.|-+|..+ .|+|||||+.....
T Consensus 42 ~~~~p~G~I~L~~~~v~-~~------~~~~~~~~F~i~~~~~~~i~~~~g~~~~~~g~~~~~~~~~~~~f~A~s~~e~~~ 114 (130)
T 1v88_A 42 KNGQWVGTVLLNACEII-ER------PSKKDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLIIRATSESDGRC 114 (130)
T ss_dssp SSCCCCEEEECSSCEEC-CC------CTTTSSCEEEEECTTCCCCSCSSCTTSCSCSCCCSCCCSSCCEEECSSHHHHHH
T ss_pred CCCCceEEEEcCCCEEE-EC------CCCCCCeEEEEEcCCccccccccCCcccccccccccCCceEEEEECCCHHHHHH
Confidence 46789999999876532 11 23457899999998653 38899999999999
Q ss_pred HHHHHHHHH
Q 041344 61 WVSTLHAAQ 69 (236)
Q Consensus 61 Wvstl~Atq 69 (236)
|+..|+.+.
T Consensus 115 Wi~ai~~a~ 123 (130)
T 1v88_A 115 WMDALELAL 123 (130)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987653
No 16
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.00 E-value=2.4e-05 Score=56.50 Aligned_cols=58 Identities=19% Similarity=0.200 Sum_probs=46.1
Q ss_pred CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344 3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ 69 (236)
Q Consensus 3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq 69 (236)
..|..++|.|.++..+.+.. ..-..+||.|-|| .+.|+|||||+.....|+..|+.+.
T Consensus 46 ~~~~~~~g~I~L~~~~~~~~--------~~~~~~~F~i~~~-~r~~~l~a~s~~e~~~Wi~al~~~~ 103 (119)
T 2dhk_A 46 AQDANPLDSIDLSSAVFDCK--------ADAEEGIFEIKTP-SRVITLKAATKQAMLYWLQQLQMKR 103 (119)
T ss_dssp TTCCSCSEEEEGGGCEEEEC--------TTGGGCEEEEECS-SCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCcccccEEECCCCEEEec--------CCCCCCEEEEEeC-CcEEEEECCCHHHHHHHHHHHHHHH
Confidence 35678999999987665542 1123579999999 7889999999999999999998765
No 17
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=97.97 E-value=2.5e-05 Score=55.83 Aligned_cols=61 Identities=21% Similarity=0.382 Sum_probs=48.2
Q ss_pred CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHHH
Q 041344 3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQL 70 (236)
Q Consensus 3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atql 70 (236)
.+|..++|.|.++..+.|...+. .-..+||.|-|| .+.|+|+|+|+.....|+..|+.+..
T Consensus 52 ~~~~~~~g~i~L~~~~~v~~~~~------~~~~~~F~i~~~-~r~~~l~a~s~~e~~~Wi~al~~~i~ 112 (126)
T 1fao_A 52 QMSPEPIRILDLTECSAVQFDYS------QERVNCFCLVFP-FRTFYLCAKTGVEADEWIKILRWKLS 112 (126)
T ss_dssp TTCSSCSEEEEGGGCCEEEEECS------SSSSSEEEEEET-TEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCCceeEEEccceEEEEeccc------CCCCCEEEEEeC-CcEEEEECCCHHHHHHHHHHHHHHHH
Confidence 45678999999998877765441 122479999987 56899999999999999999976543
No 18
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=97.95 E-value=2.5e-05 Score=54.89 Aligned_cols=62 Identities=21% Similarity=0.263 Sum_probs=48.7
Q ss_pred CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344 3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ 69 (236)
Q Consensus 3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq 69 (236)
.++..++|.|.++..+.+...+. ..-..+||.|-||..+.|+|+|+|+.....|+..|+.+.
T Consensus 39 ~~~~~~~g~i~L~~~~~~~~~~~-----~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~ai~~~~ 100 (113)
T 1pls_A 39 KSDNSPKGMIPLKGSTLTSPCQD-----FGKRMFVFKITTTKQQDHFFQAAFLEERDAWVRDINKAI 100 (113)
T ss_dssp TTCSSCSEEEESSSCCEESSCCS-----SCCSSSEEEEEETTTEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCcceEEEcCCCEEEEecCC-----CCCCccEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHH
Confidence 34678999999988776642221 122457999999998999999999999999999997654
No 19
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=97.95 E-value=2.5e-05 Score=60.74 Aligned_cols=62 Identities=18% Similarity=0.263 Sum_probs=53.1
Q ss_pred CCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344 6 PTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 6 ~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At 68 (236)
..++|.|.++..+.|...+.+-.+.+.....||-|.||. +.|||||+|+.....|+..|+.+
T Consensus 58 ~~~~G~I~L~~~~~v~~~~~~~~~~~~~~~~~f~i~t~~-rt~~l~A~s~~e~~~Wi~aL~~~ 119 (164)
T 2lul_A 58 KYRKGFIDVSKIKCVEIVKNDDGVIPCQNKYPFQVVHDA-NTLYIFAPSPQSRDLWVKKLKEE 119 (164)
T ss_dssp CCCCCEEEGGGCCEEEECCCCSSSCCSSSCSEEEEECSS-CEEEEECSSHHHHHHHHHHHHHH
T ss_pred cccccEEEEeeeEEEEeccccccCcccccceeEEEecCC-cEEEEECCCHHHHHHHHHHHHHH
Confidence 457999999988888877777666777788999999996 57999999999999999999754
No 20
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=97.95 E-value=2.5e-05 Score=54.27 Aligned_cols=63 Identities=16% Similarity=0.233 Sum_probs=47.5
Q ss_pred CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeec-------cccceeeeecChhHHHHHHHHHHHHH
Q 041344 3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTP-------QKKDYFLCAETPGAARAWVSTLHAAQ 69 (236)
Q Consensus 3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtp-------qkK~yfLcAETp~aaraWvstl~Atq 69 (236)
.+|..++|+|.++..+-+.+.|..- .-..+||-|-|| ..+.|+|+|+|+.....|+..|+.+.
T Consensus 42 ~~~~~~~g~i~L~~~~v~~~~~~~~----~~~~~~f~i~~~~~~~~~~~~~~~~l~a~s~~e~~~Wi~al~~~~ 111 (118)
T 1v89_A 42 EEDTKPQGCMYLPGCTIKEIATNPE----EAGKFVFEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVA 111 (118)
T ss_dssp SSCCSCSEEECSTTEEEEEECCCSS----CCCCCEEEEEESCCSSCCSSCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCCceEEEECCCCEEEEcCcCcc----cCCcceEEEECCccccccCCCcEEEEECCCHHHHHHHHHHHHHHH
Confidence 3567899999997665444544221 123579999996 67889999999999999999997653
No 21
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=97.90 E-value=2.3e-05 Score=55.35 Aligned_cols=63 Identities=16% Similarity=0.294 Sum_probs=48.6
Q ss_pred CCCCCcceeEEeecCceeeeeccc-cCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHHH
Q 041344 3 RNEPTVKGTITFDENSTIAISPVN-FHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQL 70 (236)
Q Consensus 3 R~e~~~kG~I~fDa~STitiSPvN-f~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atql 70 (236)
.+|..++|.|.++....|...+.. +. -..+||.|-|| .+.|+|+|+|......|+..|+.+..
T Consensus 48 ~~~~~~~g~i~l~~~~~v~~~~~~~~~----~~~~~F~i~~~-~r~~~l~a~s~~e~~~W~~al~~~i~ 111 (125)
T 1eaz_A 48 ELEKEPLRVIPLKEVHKVQECKQSDIM----MRDNLFEIVTT-SRTFYVQADSPEEMHSWIKAVSGAIV 111 (125)
T ss_dssp TTCSSCSEEEEGGGCCEEEECTTHHHH----TCSSEEEEECS-SCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCcceeEEEcccceEEeeccccccC----CcCCEEEEEeC-CcEEEEEcCCHHHHHHHHHHHHHHHH
Confidence 356789999999988877664321 11 23579999987 56799999999999999999976543
No 22
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=97.89 E-value=1.7e-05 Score=58.04 Aligned_cols=37 Identities=16% Similarity=0.281 Sum_probs=33.5
Q ss_pred ccceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344 33 YDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ 69 (236)
Q Consensus 33 YDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq 69 (236)
.+.+||.|-||..+.|+|||||+.....||..|+.+.
T Consensus 87 ~~~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~ai~~~i 123 (128)
T 2rlo_A 87 EENFEFLIVSSTGQTWHFEAASFEERDAWVQAIESQI 123 (128)
T ss_dssp CCCCCEEEECTTSCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred cCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence 5789999999988999999999999999999997653
No 23
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.88 E-value=4.2e-05 Score=56.36 Aligned_cols=65 Identities=20% Similarity=0.250 Sum_probs=45.7
Q ss_pred CCCCcceeEEeecCc-eeee----eccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344 4 NEPTVKGTITFDENS-TIAI----SPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ 69 (236)
Q Consensus 4 ~e~~~kG~I~fDa~S-Titi----SPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq 69 (236)
.|..++|.|..+.+. .|.+ +++... ..+...+||.|-|+..+.|||||||+.....|+..|+.+.
T Consensus 44 ~~~~~~g~i~l~~~~~~i~~~~~~~~v~~~-~~~~~~~~F~I~~~~~r~~~l~A~s~~e~~~Wi~al~~a~ 113 (130)
T 2d9v_A 44 TAQDEEDRVVIHFNVRDIKVGQECQDVQPP-EGRSRDGLLTVNLREGSRLHLCAETRDDAIAWKTALMEAN 113 (130)
T ss_dssp STTSEEEEEECTTTEEEEEEGGGCSSCCCC-SSCCTTTEEEEEETTSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCcCceEecccceeEEeccccccccCCC-CCCCcCcEEEEEeCCCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence 456688988765432 2222 122211 1233568999999888899999999999999999998764
No 24
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Probab=97.87 E-value=3.5e-05 Score=57.22 Aligned_cols=64 Identities=25% Similarity=0.457 Sum_probs=47.5
Q ss_pred CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344 3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ 69 (236)
Q Consensus 3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq 69 (236)
.++..++|.|.++..+ |...|-.. ...-..+||.|-||..+.|+|+|+|......|+..|+.+.
T Consensus 55 ~~~~~~~g~i~L~~~~-v~~~~~~~--~~~~~~~~F~I~~~~~r~~~l~a~s~~e~~~Wi~al~~~i 118 (148)
T 1u5f_A 55 DKDKQQKGEFAIDGYD-VRMNNTLR--KDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFIL 118 (148)
T ss_dssp TTCSSCSEEEECTTCE-EEECTTSC--SSTTGGGEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred CCCcccceEEEcCCcE-EEECCCcc--cCCCCccEEEEECCCCcEEEEECCCHHHHHHHHHHHHHHH
Confidence 3567789999998774 44333111 1111248999999998999999999999999999987653
No 25
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=97.87 E-value=2e-05 Score=58.21 Aligned_cols=57 Identities=21% Similarity=0.376 Sum_probs=46.1
Q ss_pred CCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344 5 EPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 5 e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At 68 (236)
+..++|+|.++..+.+... ++-..+||.|-||..+.|||+|+|+.....|+..|+.+
T Consensus 66 ~~~~~g~I~L~~~~~~~~~-------~~~~~~~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~a 122 (150)
T 1wg7_A 66 SKEPKGSIFLDSCMGVVQN-------NKVRRFAFELKMQDKSSYLLAADSEVEMEEWITILNKI 122 (150)
T ss_dssp SSCCSEEECTTTCCEECCC-------CSSCTTEEEEECSSSCEEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCcCcEEecccCEEEecC-------CCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHHHHH
Confidence 5679999999885554322 23346899999998899999999999999999999754
No 26
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=97.85 E-value=5.8e-05 Score=53.32 Aligned_cols=63 Identities=25% Similarity=0.400 Sum_probs=46.9
Q ss_pred CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344 3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ 69 (236)
Q Consensus 3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq 69 (236)
.+|..++|+|.++.. + |.++.-. ...-..+||.|.+|..+.|+|+|+|+.....|+..|+.+.
T Consensus 46 ~~~~~~~g~i~l~~~-~--v~~~~~~-~~~~~~~~f~i~~~~~r~~~l~a~s~~e~~~Wi~al~~a~ 108 (123)
T 1upq_A 46 SREESVLGSVLLPSY-N--IRPDGPG-APRGRRFTFTAEHPGMRTYVLAADTLEDLRGWLRALGRAS 108 (123)
T ss_dssp TTCCSCCEEEEGGGC-E--EEECCSS-CTTSSSSEEEEECTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCcccceEEECCCC-E--EEECCCC-ccCCCcEEEEEECCCCeEEEEECCCHHHHHHHHHHHHHHH
Confidence 356788999997653 3 3333211 1222468999999999999999999999999999997654
No 27
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=97.77 E-value=6.2e-05 Score=56.81 Aligned_cols=61 Identities=25% Similarity=0.440 Sum_probs=46.8
Q ss_pred CCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344 4 NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 4 ~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At 68 (236)
.+..+.|.|.++..++|...+..-. + -..+||.|-||. +.|||+|||+.....||..|+.+
T Consensus 58 ~~~~~~G~I~L~~~~~V~~~~~~~~--~-~~~~~F~i~t~~-r~y~l~A~s~~e~~~Wi~al~~a 118 (126)
T 1v5p_A 58 VGAGAVGSLQLTYISKVSIATPKQK--P-KTPFCFVINALS-QRYFLQANDQKDLKDWVEALNQA 118 (126)
T ss_dssp TTCCCSEEEETTTCCEEEECCTTTS--C-SCSSEEEEECSS-CEEEEECSSHHHHHHHHHHHHHT
T ss_pred CCceeeEEEECCCccEEecCCcccC--C-CCCEEEEEECCC-EEEEEECCCHHHHHHHHHHHHHH
Confidence 3567899999987778876554322 1 235799888775 56999999999999999988743
No 28
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Probab=97.76 E-value=7.6e-05 Score=53.62 Aligned_cols=64 Identities=20% Similarity=0.350 Sum_probs=46.7
Q ss_pred CCcceeEEeecCce--eeeeccccCCCCCccceeEEeee--ccc-----------------cceeeeecChhHHHHHHHH
Q 041344 6 PTVKGTITFDENST--IAISPVNFHGLPKYDGCCFYIGT--PQK-----------------KDYFLCAETPGAARAWVST 64 (236)
Q Consensus 6 ~~~kG~I~fDa~ST--itiSPvNf~g~~kYDgCCfyIgt--pqk-----------------K~yfLcAETp~aaraWvst 64 (236)
..++|.|.++..+. |...|-...+ ...||-|-| |.+ +.|||+|+|+.....|+..
T Consensus 47 ~~p~g~I~L~~~~~~~v~~~~~~~~~----~~~~F~i~~~~p~~~~~~~~~~~~~~~~~~~r~~~l~A~s~~e~~~Wi~a 122 (134)
T 2y7b_A 47 KNPIGRINLANCTSRQIEPANREFCA----RRNTFELITVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQK 122 (134)
T ss_dssp SCCSEEEEGGGBCSSSCEECCTTTCC----CTTEEEEEEEEECCTTCCCCSSEEEETTEEEEEEEEECSSHHHHHHHHHH
T ss_pred cCceEEEEhhhCccccccccchhhcc----CCCEEEEEecCCCcccccccccccccCCCceEEEEEECCCHHHHHHHHHH
Confidence 68899999987554 3333322222 235999988 553 3699999999999999999
Q ss_pred HHHHHHHHH
Q 041344 65 LHAAQLVLK 73 (236)
Q Consensus 65 l~AtqlVlk 73 (236)
|+.+...++
T Consensus 123 l~~~i~~~~ 131 (134)
T 2y7b_A 123 LNQVLVDIR 131 (134)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 988766655
No 29
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A
Probab=97.71 E-value=7.5e-05 Score=60.74 Aligned_cols=64 Identities=25% Similarity=0.442 Sum_probs=48.7
Q ss_pred CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344 3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ 69 (236)
Q Consensus 3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq 69 (236)
..+..++|.|.++..+.+...+. +...-..+||.|-||..+.|+|+|+|+..+..|+..|+.+.
T Consensus 144 ~~~~~p~g~I~L~~~~~v~~~~~---~~~~~k~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~aL~~ai 207 (211)
T 1u5e_A 144 DKDKQQKGEFAIDGYDVRMNNTL---RKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLKFIL 207 (211)
T ss_dssp TTCSSCSEEEECTTCEEEECGGG---CSSTTGGGEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCccceEEEEeCCcEEEEcCCc---cccCCCCCEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence 34677899999988776643221 11111358999999998999999999999999999997653
No 30
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=97.63 E-value=0.00023 Score=57.32 Aligned_cols=76 Identities=20% Similarity=0.292 Sum_probs=53.5
Q ss_pred CCCCCcceeEEeecCceeeeeccc----cCCCCCccceeEEeeeccc-----cceeeeecChhHHHHHHHHHHHHH---H
Q 041344 3 RNEPTVKGTITFDENSTIAISPVN----FHGLPKYDGCCFYIGTPQK-----KDYFLCAETPGAARAWVSTLHAAQ---L 70 (236)
Q Consensus 3 R~e~~~kG~I~fDa~STitiSPvN----f~g~~kYDgCCfyIgtpqk-----K~yfLcAETp~aaraWvstl~Atq---l 70 (236)
..+..++|.|.+..-+.+.+.++. ..+.|+ .-||.|-+|.+ ..|||||||......|+..||.|. .
T Consensus 202 ~~~~~~~~~i~l~~l~~~~v~~~~~~~~~~~~~~--~~~F~i~~~~~~~~~~~~~~l~A~s~~e~~~Wi~air~Ak~g~~ 279 (291)
T 3tca_A 202 GKTKTSRDLACFIQFENVNIYYGIQCKMKYKAPT--DHCFVLKHPQIQKESQYIKYLCCDDARTLSQWVMGIRIAKYGKT 279 (291)
T ss_dssp TCCSSTTTCEEEEEGGGCEEEEECSHHHHHCCSS--SCEEEEECTTCCSCCTTSEEEECSSHHHHHHHHHHHHHHHHTHH
T ss_pred CccccccCceeeccceeEEEEecCccccccCCCC--CeEEEEEcCCCCCCCceEEEEECCCHHHHHHHHHHHHHHhcchH
Confidence 356778888888766655553322 112221 24999999875 349999999999999999998773 4
Q ss_pred HHHHHHHHhh
Q 041344 71 VLKAHKEAVN 80 (236)
Q Consensus 71 VlkAHKEAvn 80 (236)
.++-|.+|+.
T Consensus 280 l~~ny~~~~~ 289 (291)
T 3tca_A 280 LYDNYQRAVA 289 (291)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 5677777763
No 31
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=97.59 E-value=0.00013 Score=57.33 Aligned_cols=60 Identities=8% Similarity=0.154 Sum_probs=45.4
Q ss_pred CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344 3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At 68 (236)
..|..+.|.|.++..+.++..+. .+-..|||.|-||. +.|+|||||+.....|+.-|+..
T Consensus 52 ~~d~~~~g~I~L~~~~~~~~~~~-----~~~~~~~F~I~t~~-r~~~f~A~s~ee~~eWi~aI~~v 111 (149)
T 1x1f_A 52 KKSIIYVDKLDIVDLTCLTEQNS-----TEKNCAKFTLVLPK-EEVQLKTENTESGEEWRGFILTV 111 (149)
T ss_dssp SSCSSCSEECCCSSCCEEEECCC-----TTSCCCEEEEECSS-CCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCccccCcEEECCCceEEeeccC-----CCCcCcEEEEEcCC-CEEEEEcCCHHHHHHHHHHHHHH
Confidence 45677889998888776643211 12246899999985 68999999999999999988643
No 32
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=97.55 E-value=0.00027 Score=49.77 Aligned_cols=60 Identities=18% Similarity=0.385 Sum_probs=45.1
Q ss_pred CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccc---------------------cceeeeecChhHHHHH
Q 041344 3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQK---------------------KDYFLCAETPGAARAW 61 (236)
Q Consensus 3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqk---------------------K~yfLcAETp~aaraW 61 (236)
.+|..++|.|.++..+.+.+.+ .-...||-|-+|.. +.|+|+|+|+.....|
T Consensus 39 ~~~~~~~g~i~L~~~~v~~~~~-------~~~~~~f~i~~~~~~~~~~~~~~~~~~~~~v~~~~r~~~l~a~s~~e~~~W 111 (127)
T 1fgy_A 39 TTDKEPRGIIPLENLSIREVLD-------PRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEW 111 (127)
T ss_dssp TTCSSCSEEEECTTCEEEEECC-------SSCSSEEEEECSSSTTCCCCCEEECTTSCEEECCCSEEEEECSSHHHHHHH
T ss_pred CCCCCcceEEECCceEEEEccC-------CCCCceEEEecCCccccccccccccCCcceecCCceEEEEECCCHHHHHHH
Confidence 3567899999998754332221 12357999998863 5799999999999999
Q ss_pred HHHHHHHH
Q 041344 62 VSTLHAAQ 69 (236)
Q Consensus 62 vstl~Atq 69 (236)
+..|+.+.
T Consensus 112 i~al~~~i 119 (127)
T 1fgy_A 112 MKSIKASI 119 (127)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99997653
No 33
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=97.49 E-value=0.00015 Score=49.66 Aligned_cols=53 Identities=23% Similarity=0.591 Sum_probs=38.9
Q ss_pred CCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344 6 PTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 6 ~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At 68 (236)
..++|.|.+.. .. +.|. .-+.+||-|.||. +.|+|||||+.....|+..|..|
T Consensus 40 ~~~~~~i~l~~-~~--~~~~------~~~~~~F~i~~~~-r~~~l~A~s~~e~~~Wi~aLq~A 92 (94)
T 2rsg_A 40 YGCRGSICLSK-AV--ITPH------DFDECRFDISVND-SVWYLRAQDPDHRQQWIDAIEQH 92 (94)
T ss_dssp TCCSEEEETTT-CE--EEEC------SSCSSEEEEEETT-EEEEEECCSSCCTHHHHHHHHHH
T ss_pred ccceeeEecce-ee--eecC------cccceeEEEEeCC-eEEEEECCCHHHHHHHHHHHHhh
Confidence 45778876643 22 2332 2356899999985 57999999999999999988654
No 34
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=97.48 E-value=6.1e-05 Score=53.91 Aligned_cols=37 Identities=19% Similarity=0.274 Sum_probs=31.2
Q ss_pred cceeEEeeecc---ccceeeeecChhHHHHHHHHHHHHHH
Q 041344 34 DGCCFYIGTPQ---KKDYFLCAETPGAARAWVSTLHAAQL 70 (236)
Q Consensus 34 DgCCfyIgtpq---kK~yfLcAETp~aaraWvstl~Atql 70 (236)
..+||.|-+|+ .+.|+|+|+|+.....|+..|+.+..
T Consensus 71 ~~~~F~I~~~~~~~~~~~~~~a~s~~e~~~Wi~al~~~~~ 110 (125)
T 1unq_A 71 RPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVAD 110 (125)
T ss_dssp STTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEecCCCCceeEEEEeCCHHHHHHHHHHHHHHHh
Confidence 45899999863 56899999999999999999976543
No 35
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=97.45 E-value=0.00049 Score=48.45 Aligned_cols=56 Identities=13% Similarity=0.073 Sum_probs=41.9
Q ss_pred CcceeEEeecCc-eeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344 7 TVKGTITFDENS-TIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 7 ~~kG~I~fDa~S-TitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At 68 (236)
..+|.|.++-.. +|...|- .-..+||-|-||..+.|+|+|+|......|+..|+.+
T Consensus 43 ~~~~~~~i~l~~~~v~~~~~------~~~~~~F~i~~~~~r~~~l~A~s~~e~~~Wi~al~~~ 99 (107)
T 2cof_A 43 SKVAQQPLSLVGCEVVPDPS------PDHLYSFRILHKGEELAKLEAKSSEEMGHWLGLLLSE 99 (107)
T ss_dssp CSEEEEEECTTTCEEECCCB------TTBSCEEEEEETTEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCeeEEeccceEEEECCC------CCCCeEEEEEeCCCeEEEEEcCCHHHHHHHHHHHHHH
Confidence 466777776543 3544331 2245799999998888999999999999999998754
No 36
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=97.41 E-value=0.00063 Score=49.34 Aligned_cols=61 Identities=13% Similarity=0.120 Sum_probs=42.2
Q ss_pred CCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344 4 NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 4 ~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At 68 (236)
.|..+.|.|-+...+...+.+.+-.+ .-.||.|-++..+.|+|||+++..+..|+.-|+.+
T Consensus 39 ~~~~p~~~i~l~~~~~~~~~~~~~~~----r~~~F~l~~~~~~~y~f~A~s~ee~~~Wi~ai~~~ 99 (112)
T 3cxb_B 39 TDVIPLLSVNMGGEQCGGCRRANTTD----RPHAFQVILSDRPCLELSAESEAEMAEWMQHLCQA 99 (112)
T ss_dssp SCCSCSEEEETTC-CEEEEEECCCSS----CTTEEEEEETTSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCccceEEecCCEEEeeeccCCCC----CCeEEEEEcCCCCEEEEEcCCHHHHHHHHHHHHHH
Confidence 45667777766544332222222111 23599999999999999999999999999998654
No 37
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=97.38 E-value=0.0003 Score=48.29 Aligned_cols=34 Identities=15% Similarity=0.419 Sum_probs=31.3
Q ss_pred ceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344 35 GCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 35 gCCfyIgtpqkK~yfLcAETp~aaraWvstl~At 68 (236)
.+||-|-||..+.|+|+|+|+.....|+..|++|
T Consensus 73 ~~~F~i~~~~~~~~~~~A~s~~e~~~Wi~ai~~A 106 (106)
T 1btn_A 73 KHVFKLRLSDGNEYLFQAKDDEEMNTWIQAISSA 106 (106)
T ss_dssp SSEEEEECTTSCEEEEECSSHHHHHHHHHHHHHC
T ss_pred ccEEEEEecCCCEEEEECCCHHHHHHHHHHHhcC
Confidence 4799999999899999999999999999999764
No 38
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A
Probab=97.32 E-value=0.00044 Score=52.27 Aligned_cols=58 Identities=19% Similarity=0.257 Sum_probs=38.3
Q ss_pred CCcceeEEeecCce-eeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344 6 PTVKGTITFDENST-IAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ 69 (236)
Q Consensus 6 ~~~kG~I~fDa~ST-itiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq 69 (236)
..++|.|.++.... +.+.|.. .-..+||.|-||. +.|+|+|||+.....|+..|+.+.
T Consensus 52 ~~~~g~i~l~~~~~~~~~~~~~-----~~~~~~F~I~t~~-r~~~l~A~s~~e~~~Wi~ai~~~~ 110 (168)
T 2j59_M 52 TPSEEEQPISVNACLIDISYSE-----TKRKNVFRLTTSD-CECLFQAEDRDDMLAWIKTIQESS 110 (168)
T ss_dssp -------CEECSSCEEEECSSS-----CSCSSEEEEECSS-CEEEEECSSHHHHHHHHHHHHHHC
T ss_pred cccCCceEecccceEEEecccc-----CCCCCEEEEEeCC-ceEEEEcCCHHHHHHHHHHHHHHH
Confidence 45788888777543 4444432 1124799999998 689999999999999999997653
No 39
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=97.25 E-value=0.0007 Score=51.17 Aligned_cols=64 Identities=9% Similarity=0.155 Sum_probs=45.8
Q ss_pred CCCCcceeEEeecCceeeeeccccC---CCCCccceeEEeeeccc------cceeeeecChhHHHHHHHHHHHH
Q 041344 4 NEPTVKGTITFDENSTIAISPVNFH---GLPKYDGCCFYIGTPQK------KDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 4 ~e~~~kG~I~fDa~STitiSPvNf~---g~~kYDgCCfyIgtpqk------K~yfLcAETp~aaraWvstl~At 68 (236)
.|..|.|.|.++ +.+|...+-+-. +-+.-.++||.|-+++. ..|+|+|+|+..+..|+..|+.+
T Consensus 44 ~d~~P~gsI~L~-~c~v~~~~~~~~~~~~~~~~~~~~F~i~~~~~~~~~~~~~y~f~A~s~~e~~~Wv~aI~~~ 116 (120)
T 4a6h_A 44 KDLVPVMSLALS-ECTVTEHSRKNSTSSPNSTGSDAKFVLHAKQNGIIRRGHNWVFKADSYESMMSWFDNLKIL 116 (120)
T ss_dssp TCCSCSEEEEGG-GEEEEEECCCCC---------CCEEEEEESSSSSSCTTCEEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCceEEEECC-CCEEEEcccccccccccccCCCcEEEEEeCCCCcccCceEEEEEcCCHHHHHHHHHHHHHH
Confidence 477899999995 566665332211 00112678999998885 48999999999999999999754
No 40
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Probab=97.25 E-value=0.00082 Score=49.96 Aligned_cols=60 Identities=13% Similarity=0.253 Sum_probs=44.5
Q ss_pred CCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344 4 NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ 69 (236)
Q Consensus 4 ~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq 69 (236)
.+..+.|.|.++ +.+|...+ .. .-..+||-|-||...+|+|+|+++.....|+.-|+.+.
T Consensus 64 ~~~~p~g~I~L~-~~~v~~~~-~~----~kr~~~F~l~t~~~~~yl~qA~s~~e~~~Wi~aI~~~i 123 (129)
T 2p0d_A 64 AGSRPESSVDLR-GAALAHGR-HL----SSRRNVLHIRTIPGHEFLLQSDHETELRAWHRALRTVI 123 (129)
T ss_dssp ---CCSEEEECT-TCEEEECT-TS----CSSSSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHHH
T ss_pred cCCCCccEEEeC-CcEEEECC-CC----CCCCcEEEEEcCCCCEEEEECCCHHHHHHHHHHHHHHH
Confidence 356899999987 44554421 11 11247999999999999999999999999999997654
No 41
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=97.21 E-value=0.00033 Score=55.06 Aligned_cols=65 Identities=11% Similarity=0.173 Sum_probs=45.2
Q ss_pred CCCCcceeEEeecCceeeee---ccccCC-------CCC--ccc--------eeEEeeeccccceeeeecChhHHHHHHH
Q 041344 4 NEPTVKGTITFDENSTIAIS---PVNFHG-------LPK--YDG--------CCFYIGTPQKKDYFLCAETPGAARAWVS 63 (236)
Q Consensus 4 ~e~~~kG~I~fDa~STitiS---PvNf~g-------~~k--YDg--------CCfyIgtpqkK~yfLcAETp~aaraWvs 63 (236)
.|..++|+|.++..+.|... +-+-.+ .++ -+| .||-|.||. +.|||||||+.....|+.
T Consensus 47 ~~~~~~G~I~L~~~~~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~F~I~t~~-rt~yl~A~s~~E~~eWi~ 125 (169)
T 1btk_A 47 RRGSKKGSIDVEKITCVETVVPEKNPPPERQIPRRGEESSEMEQISIIERFPYPFQVVYDE-GPLYVFSPTEELRKRWIH 125 (169)
T ss_dssp EEEEEEEEEEGGGEEEEEECCCCSSCCGGGCC---------CCTTHHHHCCCEEEEEEETT-CCEEEEESCHHHHHHHHH
T ss_pred CCCceeeEEECcceEEEEeccCCCCcchhcccccccCcccccccccccccccccEEEEeCC-ceEEEEcCCHHHHHHHHH
Confidence 35678999999887665433 111110 000 011 799999987 689999999999999999
Q ss_pred HHHHHH
Q 041344 64 TLHAAQ 69 (236)
Q Consensus 64 tl~Atq 69 (236)
.|+.+.
T Consensus 126 aI~~~i 131 (169)
T 1btk_A 126 QLKNVI 131 (169)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998653
No 42
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=97.20 E-value=0.00056 Score=60.48 Aligned_cols=62 Identities=19% Similarity=0.357 Sum_probs=46.2
Q ss_pred CCCCcceeEEeecCcee-ee---eccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344 4 NEPTVKGTITFDENSTI-AI---SPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 4 ~e~~~kG~I~fDa~STi-ti---SPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At 68 (236)
.|..++|.|.+...+.+ .+ .|....+.. -.+||-|-||. +.|||||||+.....|+..|+.+
T Consensus 305 ~d~~~~G~I~L~~~~~~~~v~~~~~~~~~~~~--~~~~F~I~t~~-rty~l~A~s~~e~~~Wi~aL~~~ 370 (386)
T 3lju_X 305 LDAFARGEVFIGSKESGYTVLHGFPPSTQGHH--WPHGITIVTPD-RKFLFACETESDQREWVAAFQKA 370 (386)
T ss_dssp TCSBCSEEEECCCGGGTCEEEESCCTTCCSCC--SCEEEEEECSS-CEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCcccceEEEeecceeeeeecccCCccccccC--CCcEEEEEeCC-eEEEEEcCCHHHHHHHHHHHHHH
Confidence 46678999999765554 23 333333221 15999999996 89999999999999999999754
No 43
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=97.14 E-value=0.00098 Score=54.19 Aligned_cols=57 Identities=25% Similarity=0.367 Sum_probs=45.1
Q ss_pred CCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344 4 NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ 69 (236)
Q Consensus 4 ~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq 69 (236)
.+..++|.|.++..+.|. +.. -..+||-|.||. +.|+|||||+..+..|+..|+.+.
T Consensus 98 ~~~~~~g~I~L~~~~~v~--~~~------~k~~~F~I~t~~-r~~~l~A~s~~e~~~Wv~aL~~~i 154 (228)
T 3tfm_A 98 SEEKLKGTVEVRSAKEII--DNT------NKENGIDIIMAD-RTFHLIAESPEDASQWFSVLSQVH 154 (228)
T ss_dssp TCCSEEEEEEGGGCSEEE--EET------TTTSEEEEECSS-CEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCcceeEEEEcCCCEEec--cCC------CCCcEEEEEcCC-cEEEEEcCCHHHHHHHHHHHHHHH
Confidence 456789999998876544 322 135899998875 789999999999999999997655
No 44
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A
Probab=97.10 E-value=0.0015 Score=55.03 Aligned_cols=62 Identities=18% Similarity=0.355 Sum_probs=47.0
Q ss_pred CCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHHHH
Q 041344 4 NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLV 71 (236)
Q Consensus 4 ~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~AtqlV 71 (236)
.+..+.|.|.++ +++|...|-+ ++ ..+||.|-||..+.|+|||+|+..+..|+..|+.+..-
T Consensus 64 ~~~~p~g~I~L~-~~~v~~~~~~----~k-k~~~F~I~t~~~r~y~f~A~s~ee~~~Wi~aI~~a~~~ 125 (263)
T 3a8p_A 64 QNSAPRCALFAE-DSIVQSVPEH----PK-KEHVFCLSNSCGDVYLFQATSQTDLENWVTAIHSACAS 125 (263)
T ss_dssp --CCCSEEEECT-TCEEEECTTC----SS-CSSEEEEECTTSCEEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred cccCccceEEcC-CcEEEECCcC----CC-CCCEEEEEcCCCcEEEEEcCCHHHHHHHHHHHHHHHHh
Confidence 356789999987 5566543322 11 36899999998899999999999999999999765543
No 45
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=97.00 E-value=0.0014 Score=47.03 Aligned_cols=35 Identities=23% Similarity=0.487 Sum_probs=31.9
Q ss_pred ceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344 35 GCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ 69 (236)
Q Consensus 35 gCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq 69 (236)
.+||.|-||..+.|+|+|+++.....|+..|+.+.
T Consensus 82 ~~~F~i~~~~~~~~~f~A~s~~e~~~Wi~ai~~~~ 116 (123)
T 1wjm_A 82 KHVFKLGLQDGKEYLFQAKDEAEMSSWLRVVNAAI 116 (123)
T ss_dssp SSEEEEECSSSCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCcEEEEECCCHHHHHHHHHHHHHHH
Confidence 58999999998999999999999999999997653
No 46
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.00 E-value=0.0021 Score=45.83 Aligned_cols=32 Identities=25% Similarity=0.391 Sum_probs=28.6
Q ss_pred eeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344 36 CCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 36 CCfyIgtpqkK~yfLcAETp~aaraWvstl~At 68 (236)
.||.|-|| .+.|+|+|+|+.....|+..|+.+
T Consensus 68 ~~F~I~~~-~r~~~l~a~s~~e~~~Wi~al~~~ 99 (114)
T 2da0_A 68 KSFDLISH-NRTYHFQAEDEQDYVAWISVLTNS 99 (114)
T ss_dssp SCEEEEET-TEEEEEECSSHHHHHHHHHHHHHH
T ss_pred CEEEEEcC-CcEEEEEcCCHHHHHHHHHHHHHH
Confidence 49999987 568999999999999999999754
No 47
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*
Probab=96.91 E-value=0.0016 Score=55.08 Aligned_cols=66 Identities=14% Similarity=0.202 Sum_probs=45.8
Q ss_pred CCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHHHHHHHHHHH
Q 041344 6 PTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKEA 78 (236)
Q Consensus 6 ~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~AtqlVlkAHKEA 78 (236)
..++|+|.++....|...|- .-..+||.|-|| .+.|+|+|||......|+..|+.+..-.+.+..+
T Consensus 55 ~~p~g~I~L~~~~~V~~~~~------~~~~~~F~I~t~-~rty~l~A~se~e~~~Wi~aL~~~~~~~k~~~~~ 120 (264)
T 1qqg_A 55 SAPKRSIPLESCFNINKRAD------SKNKHLVALYTR-DEHFAIAADSEAEQDSWYQALLQLHNRAKGHHDG 120 (264)
T ss_dssp SCCSEEEEGGGEEEEEEECC------SSCSSEEEEEES-SCEEEEECSSHHHHHHHHHHHHHHC---------
T ss_pred cCcceEEEeeceEEEEeccC------CCCCcEEEEEEC-CEEEEEEeCCHHHHHHHHHHHHHHHHhccccccc
Confidence 47899999987665544331 234579999999 7889999999999999999998766555554443
No 48
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=96.71 E-value=0.0037 Score=54.12 Aligned_cols=60 Identities=22% Similarity=0.438 Sum_probs=45.6
Q ss_pred CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeecc---------------------ccceeeeecChhHHHHH
Q 041344 3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQ---------------------KKDYFLCAETPGAARAW 61 (236)
Q Consensus 3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpq---------------------kK~yfLcAETp~aaraW 61 (236)
..|..++|+|.++..+ +.++. +.-...||.|-+|. .+.|+|||+|+.....|
T Consensus 247 ~~~~~p~G~I~L~~~~---v~~~~----~~~~~~~F~I~~~~~~~~~~~~~k~~~~g~~v~~~~r~y~l~A~s~ee~~~W 319 (347)
T 2r09_A 247 TTDKEPRGIIPLENLS---IREVE----DPRKPNCFELYNPSHKGQVIKACKTEADGRVVEGNHVVYRISAPSPEEKEEW 319 (347)
T ss_dssp TTCSSCSEEEECTTCE---EEEEC----CSSCSSEEEEECSSSTTCCCCCEEECTTSCEEECCCSCEEEECSSHHHHHHH
T ss_pred CCccCCcEEEEcCCeE---EEEcc----CCCCCCEEEEEeCCccccccccccccccccccccCceEEEEECCCHHHHHHH
Confidence 3567899999998654 33332 22345799999884 36799999999999999
Q ss_pred HHHHHHHH
Q 041344 62 VSTLHAAQ 69 (236)
Q Consensus 62 vstl~Atq 69 (236)
+..|+.+.
T Consensus 320 i~aI~~ai 327 (347)
T 2r09_A 320 MKSIKASI 327 (347)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998653
No 49
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=96.70 E-value=0.00055 Score=49.52 Aligned_cols=34 Identities=18% Similarity=0.296 Sum_probs=31.5
Q ss_pred ceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344 35 GCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 35 gCCfyIgtpqkK~yfLcAETp~aaraWvstl~At 68 (236)
.+||.|-|+..++|+|+|+++.....|+..|+.+
T Consensus 84 ~~~F~l~t~~~~~~lfqA~s~~e~~~Wi~ai~~~ 117 (122)
T 1dro_A 84 KHVLRVKLANGALFLLQAHDDTEMSQWVTSLKAQ 117 (122)
T ss_dssp TTEEEEECSSSCEEEEECSSSHHHHHHHHHHHHH
T ss_pred CeEEEEEEcCCCEEEEECCCHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999765
No 50
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=96.66 E-value=0.0046 Score=46.30 Aligned_cols=60 Identities=17% Similarity=0.379 Sum_probs=44.1
Q ss_pred CCCCCcceeEEeecCceeee-eccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344 3 RNEPTVKGTITFDENSTIAI-SPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 3 R~e~~~kG~I~fDa~STiti-SPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~At 68 (236)
..|..+.|.|.+... +|+. .|.. ..-...||=|-+++ +.||||||++..+..|+..|..+
T Consensus 44 ~~d~~p~g~I~L~g~-~V~~~~~~~----~~~~~~~Fki~~~~-~~y~f~A~s~e~~~~Wl~al~~A 104 (112)
T 2coc_A 44 SQDGRLPRTIPLPSC-KLSVPDPEE----RLDSGHVWKLQWAK-QSWYLSASSAELQQQWLETLSTA 104 (112)
T ss_dssp TTCSSSCSEECGGGC-EEECCCSSS----CCSSSEEEEEEETT-EEEEEEESSHHHHHHHHHHHHHH
T ss_pred CCccCcceEEEcCCC-EEEecCccc----ccCCCCEEEEecCC-eEEEEEcCCHHHHHHHHHHHHHH
Confidence 457788999999877 4443 3321 11134699998775 46999999999999999988654
No 51
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=96.51 E-value=0.0055 Score=45.07 Aligned_cols=57 Identities=9% Similarity=0.292 Sum_probs=40.9
Q ss_pred CcceeEEeecCceeeeeccccCCCCCccceeEEeeeccc--cceeeeecChhHHHHHHHHHHHH
Q 041344 7 TVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQK--KDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 7 ~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqk--K~yfLcAETp~aaraWvstl~At 68 (236)
.++|.|.+.... |...|-. ....+| ||-|-+|+. +.|+|+|+|+.....|+..|+.+
T Consensus 59 ~~~G~I~L~~~~-v~~~~~~-~~~k~~---~F~I~~~~~~~~~~~~~A~s~ee~~~Wi~ai~~a 117 (124)
T 2w2x_D 59 LCRGILDLNTYN-VVKAPQG-KNQKSF---VFILEPKQQGDPPVEFATDKVEELFEWFQSIREI 117 (124)
T ss_dssp SCSEEEEGGGEE-EEECTTC-BTTBSE---EEEEEECC--CCCEEEEECCCHHHHHHHHHHHHH
T ss_pred ccccEEECCCCE-EEEccCC-cCCCCE---EEEEECCCCCCceEEEEECCHHHHHHHHHHHHHH
Confidence 358999887543 4443321 122333 999999875 66999999999999999999855
No 52
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=96.47 E-value=0.005 Score=52.96 Aligned_cols=57 Identities=18% Similarity=0.294 Sum_probs=41.4
Q ss_pred CCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccc-cceeeeecChhHHHHHHHHHHHH
Q 041344 5 EPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQK-KDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 5 e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqk-K~yfLcAETp~aaraWvstl~At 68 (236)
+..+.|.|.++. ++|...+- .---+||-|-||.. +.|+|+|||+.....|+..|+.+
T Consensus 316 ~~~~~~~i~l~~-~~v~~~~~------~~r~~~F~i~t~~~~~~~~l~A~s~~e~~~Wi~ai~~~ 373 (385)
T 2q13_A 316 DVAGGLAMDIDN-CSVMAVDC------EDRRYCFQITSFDGKKSSILQAESKKDHEEWICTINNI 373 (385)
T ss_dssp CSSCEEEEECTT-CEEEEECC------TTCSSEEEEECTTSCBCCCEECSSHHHHHHHHHHHHHH
T ss_pred CcCCCceEEccc-eEEEeccc------cCCCceEEEEeCCCCeEEEEEeCCHHHHHHHHHHHHHH
Confidence 455667776654 34443321 12237999999986 88999999999999999998754
No 53
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=96.18 E-value=0.0055 Score=54.16 Aligned_cols=61 Identities=13% Similarity=0.282 Sum_probs=43.9
Q ss_pred CCCCCcceeEEeecCceeeeeccccCCCCCccceeEEee---eccccceeeeecChhHHHHHHHHHHHHH
Q 041344 3 RNEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIG---TPQKKDYFLCAETPGAARAWVSTLHAAQ 69 (236)
Q Consensus 3 R~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIg---tpqkK~yfLcAETp~aaraWvstl~Atq 69 (236)
+.|..|+|+|.++.- +++++|..+. ..+||-|- +...+.|||+|+++.....|+..|+++.
T Consensus 182 ~~~~~p~g~I~L~~~-~~~~~~~~~~-----~~~~f~I~~~~~~~~R~y~l~A~s~~e~~~Wi~aIr~a~ 245 (386)
T 3lju_X 182 NDAKEPKAVMKIEHL-NATFQPAKIG-----HPHGLQVTYLKDNSTRNIFIYHEDGKEIVDWFNALRAAR 245 (386)
T ss_dssp ----CCSEEEEGGGE-EEEECHHHHT-----STTCEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCccCcccEEEeecc-EEEEcccccC-----CCceEEEEEecCCCceEEEEEcCCHHHHHHHHHhhhhcc
Confidence 457889999999874 4445665433 35677664 3555889999999999999999998874
No 54
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=95.94 E-value=0.0084 Score=51.92 Aligned_cols=58 Identities=21% Similarity=0.363 Sum_probs=40.3
Q ss_pred CCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccc-cceeeeecChhHHHHHHHHHHHH
Q 041344 4 NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQK-KDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 4 ~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqk-K~yfLcAETp~aaraWvstl~At 68 (236)
++..+.|.|.+. ..+| .|..-.+ . ..||-|-||.+ +.|+|||||+.....|+..|..+
T Consensus 338 ~~~~~~~~~~l~-~~~v--~~~~~~~-r---~~cF~i~~~~~~~~~~l~A~s~~e~~~Wi~ai~~a 396 (407)
T 4h8s_A 338 GAVAGGLIQDLD-NCSV--MAVDCED-R---RYCFQITTPNGKSGIILQAESRKENEEWICAINNI 396 (407)
T ss_dssp TCSSCCCCBCSS-CCEE--EEECCTT-C---SSEEEEECTTSSCCEEEECSSSHHHHHHHHHHHHH
T ss_pred CCCCCCeEEECC-ceEE--EECCCCC-C---CceEEEEecCCCceEEEEcCCHHHHHHHHHHHHHH
Confidence 444556665554 2344 4433222 2 36999999986 46999999999999999998654
No 55
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Probab=95.79 E-value=0.026 Score=41.58 Aligned_cols=34 Identities=6% Similarity=0.286 Sum_probs=31.5
Q ss_pred ceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344 35 GCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 35 gCCfyIgtpqkK~yfLcAETp~aaraWvstl~At 68 (236)
-+||-|-||..++|+|+|+++.....|+..|+.+
T Consensus 88 k~vF~l~t~~~~~ylfqA~s~~e~~~Wi~aI~~a 121 (124)
T 3pp2_A 88 KNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQG 121 (124)
T ss_dssp SSEEEEECTTSCEEEEECSCHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCEEEEECCCHHHHHHHHHHHHHH
Confidence 4799999999999999999999999999999865
No 56
>1w1g_A HPDK1, 3-phosphoinositide dependent protein kinase-1; transferase, PKB, pleckstrin homology domain, inositol phosphate, signal transduction; HET: 4PT; 1.45A {Homo sapiens} SCOP: b.55.1.1 PDB: 1w1d_A* 1w1h_A 2vki_A
Probab=95.63 E-value=0.014 Score=47.83 Aligned_cols=51 Identities=25% Similarity=0.609 Sum_probs=38.7
Q ss_pred CcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344 7 TVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ 69 (236)
Q Consensus 7 ~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq 69 (236)
..||.|.+|.+-.|.+ .|+. ||+|.||- |.|+|++- ++-|..|+..+..++
T Consensus 88 ~~KGeIpls~~l~ve~--k~~~--------~F~I~Tp~-RtY~~~d~-~~~AqeWv~aI~~~~ 138 (151)
T 1w1g_A 88 VLKGEIPWSQELRPEA--KNFK--------TFFVHTPN-RTYYLMDP-SGNAHKWCRKIQEVW 138 (151)
T ss_dssp EEEEEECCCTTCEEEE--SSSS--------EEEEEETT-EEEEEECT-TSCHHHHHHHHHHHH
T ss_pred cccceEecCCCeeEEE--cCCC--------EEEEECCC-ceEEEEcC-ccCHHHHHHHHHHHH
Confidence 4688888886544443 3332 99999998 89999986 889999998775543
No 57
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=95.49 E-value=0.046 Score=43.20 Aligned_cols=70 Identities=14% Similarity=0.192 Sum_probs=50.5
Q ss_pred CCCCCCcceeEEeecCceeee-eccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHHHHHHHHHHHHHH
Q 041344 2 RRNEPTVKGTITFDENSTIAI-SPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVLKAHKEA 78 (236)
Q Consensus 2 ~R~e~~~kG~I~fDa~STiti-SPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~AtqlVlkAHKEA 78 (236)
++.+..+.|.|.++.. ||.. +|..=. ...-.||-|.+|.+ .|+|+||++..-..||.-|.-+. .++||++
T Consensus 46 ~~~~~~p~G~I~L~g~-tV~~~~~~~~~---~~~k~~F~~v~~~~-ty~~~Adseee~~~WikAi~~A~--~~~~~~~ 116 (126)
T 1wi1_A 46 REKKAEPQELLQLDGY-TVDYTDPQPGL---EGGRAFFNAVKEGD-TVIFASDDEQDRILWVQAMYRAT--GQSHKPV 116 (126)
T ss_dssp CSSSSCCSEEEECSSC-EEEECCCCSSC---CSCSSEEEEECSSC-EEEEECSSHHHHHHHHHHHHHHH--TCSSCCC
T ss_pred cccCCCCceEEECCCc-EEEEecCCccc---ccCceEEEEecCCc-eEEEEcCCHHHHHHHHHHHHHHh--ccccCCC
Confidence 4678889999999984 6653 343211 12235998888855 59999999999999999885443 3777764
No 58
>2d9w_A Docking protein 2; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=95.45 E-value=0.025 Score=45.61 Aligned_cols=55 Identities=18% Similarity=0.466 Sum_probs=45.8
Q ss_pred CcceeEEeecCceeeeeccccC-CCCCccceeEEeeeccccceeeeecChhHHHHHHHHHH
Q 041344 7 TVKGTITFDENSTIAISPVNFH-GLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLH 66 (236)
Q Consensus 7 ~~kG~I~fDa~STitiSPvNf~-g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~ 66 (236)
.+|.+|.+.. -|+|+|+|-. +-|| |-=+|.|-|++ |.|+|+||++ ....|+..|-
T Consensus 62 ~~rrVIrLsd--CisV~~~~~e~~~pk-~~~aF~l~T~e-r~~~laAe~~-E~~~Wi~~ic 117 (127)
T 2d9w_A 62 AARKVIRLSD--CLRVAEAGGEASSPR-DTSAFFLETKE-RLYLLAAPAA-ERGDWVQAIC 117 (127)
T ss_dssp CCEEEECGGG--EEEEEECCSCSSSCS-SCEEEEEEESS-CEEEEEECHH-HHHHHHHHHH
T ss_pred CCceEEEhhh--CCeEecccCccCCCC-cceEEEEEeCC-cEEEEEeCcH-HHHHHHHHHH
Confidence 4678888764 6788899988 8888 44789999998 7899999987 6899998873
No 59
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=94.75 E-value=0.076 Score=39.81 Aligned_cols=60 Identities=22% Similarity=0.263 Sum_probs=44.5
Q ss_pred CcceeEEeecCceeeeeccc----cCCCCCccceeEEeeecc-----ccceeeeecChhHHHHHHHHHHHH
Q 041344 7 TVKGTITFDENSTIAISPVN----FHGLPKYDGCCFYIGTPQ-----KKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 7 ~~kG~I~fDa~STitiSPvN----f~g~~kYDgCCfyIgtpq-----kK~yfLcAETp~aaraWvstl~At 68 (236)
.+.|.| |-+....|+||. ++-.++-..|+|-|.+++ .+.|||.|+++..-..||..|+..
T Consensus 45 ~p~~~I--dl~~~~~V~~V~~~d~i~~~~~~~p~iF~I~~~~~~~~~~~~l~l~A~s~~e~~~WV~aL~~~ 113 (117)
T 2rov_A 45 NPYMVL--DIDKLFHVRPVTQTDVYRADAKEIPRIFQILYANEGISSAKNLLLLANSTEEQQKWVSRLVKK 113 (117)
T ss_dssp CCSEEE--CGGGEEEEEECCTTTCSSSCTTTGGGEEEEEECSSSSTTCEEEEEECSSHHHHHHHHHHHHHH
T ss_pred CceEEE--ECcccEEEEEcccccccccccccCCcEEEEEeCCCCCCCCcEEEEEeCCHHHHHHHHHHHHHH
Confidence 567766 445666777773 334445447999998743 578999999999999999998753
No 60
>3zbh_A ESXA; unknown function, type 7 secretion, ESAT6 family proteins, W protein ESS; 1.94A {Geobacillus thermodenitrificans}
Probab=93.34 E-value=1.3 Score=30.27 Aligned_cols=81 Identities=17% Similarity=0.271 Sum_probs=49.5
Q ss_pred HHhhhccchHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH-----HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHh
Q 041344 141 MKETLRVKDEELQNLARDLRARDSTIRDIADKLSETAEAAEA-----AASAAHTMDEQRRIACAEIERINKESTKQLETC 215 (236)
Q Consensus 141 mkEtLrVKDeEl~~LardlraRD~tIkeiadkLseTAeAAEa-----AAsaaH~~de~r~~~~sEierL~~~~~~q~~~~ 215 (236)
|...++|..++|++.|.+++.--..|+++-+.|....+.-.. |+.+-+..=.+.+....++..+-.+...++..+
T Consensus 3 M~~~i~v~~~~l~~~A~~~~~~~~~i~~~l~~L~~~v~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~ 82 (99)
T 3zbh_A 3 MAGVIRLTPEELRGVARQYNVESSNVTELIARLDQMSHTLQGIWEGASSEAFIQQYQELRPSFEKMAVLLNEVGQQLHNS 82 (99)
T ss_dssp ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999999999998888877665422 233333333344555555555555555555555
Q ss_pred hhhhhh
Q 041344 216 VLKVNF 221 (236)
Q Consensus 216 ~l~lk~ 221 (236)
.-...+
T Consensus 83 a~~~~~ 88 (99)
T 3zbh_A 83 ATILED 88 (99)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
No 61
>1mai_A Phospholipase C delta-1; pleckstrin, inositol trisphosphate, signal transduction protein, hydrolase; HET: I3P; 1.90A {Rattus norvegicus} SCOP: b.55.1.1
Probab=93.27 E-value=0.095 Score=39.55 Aligned_cols=60 Identities=18% Similarity=0.300 Sum_probs=43.1
Q ss_pred cceeEEeecCceeeee---cc--ccCCCCCccceeEEeeeccc-cceeeeecChhHHHHHHHHHHHH
Q 041344 8 VKGTITFDENSTIAIS---PV--NFHGLPKYDGCCFYIGTPQK-KDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 8 ~kG~I~fDa~STitiS---Pv--Nf~g~~kYDgCCfyIgtpqk-K~yfLcAETp~aaraWvstl~At 68 (236)
.+|.|.++.-..|..- |. |+. .+--+.|||-|..-.. |.+.|.|.++..++.||..|++-
T Consensus 54 ~~~~i~i~~I~eIr~G~~s~~~~~~~-~~~~~~~~FsIiy~~~~k~LdlvA~s~~e~~~Wv~gL~~L 119 (131)
T 1mai_A 54 ESQLFSIEDIQEVRMGHRTEGLEKFA-RDIPEDRCFSIVFKDQRNTLDLIAPSPADAQHWVQGLRKI 119 (131)
T ss_dssp TTTEEEGGGEEEEEESSCSHHHHHHC-TTSCGGGEEEEEESSSCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred cCcEEEHhhhHHHHCCCCCHHHHhhh-hcCCccceEEEEECCCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 5677777766655543 22 111 1112789999988775 78999999999999999999864
No 62
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=92.81 E-value=0.11 Score=44.52 Aligned_cols=35 Identities=17% Similarity=0.377 Sum_probs=28.6
Q ss_pred eeEEeeecccc-----ceeeeecChhHHHHHHHHHHHHHH
Q 041344 36 CCFYIGTPQKK-----DYFLCAETPGAARAWVSTLHAAQL 70 (236)
Q Consensus 36 CCfyIgtpqkK-----~yfLcAETp~aaraWvstl~Atql 70 (236)
-||.|-.++.. -||||||++.....|++.||-++-
T Consensus 201 ~~F~ik~~k~~~~~~~~~~lcaede~~~~~W~~aIr~ak~ 240 (256)
T 3hk0_A 201 HGLCIKPNKVRNETKELRLLCAEDEQTRTSWMTAFRLLKY 240 (256)
T ss_dssp EEEEEEETTCSSCCTTCEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CEEEEEcccccCCCceEEEEEeCCHHHHHHHHHHHHHHHh
Confidence 48888755442 299999999999999999998864
No 63
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=92.78 E-value=0.11 Score=45.43 Aligned_cols=34 Identities=24% Similarity=0.611 Sum_probs=28.6
Q ss_pred eEEeeecccc-----ceeeeecChhHHHHHHHHHHHHHH
Q 041344 37 CFYIGTPQKK-----DYFLCAETPGAARAWVSTLHAAQL 70 (236)
Q Consensus 37 CfyIgtpqkK-----~yfLcAETp~aaraWvstl~Atql 70 (236)
||.|-.|++. -||||||++.....|+..||-++-
T Consensus 228 ~F~ik~~~~~~~~~~~~~~caede~~~~~Wv~Air~ak~ 266 (281)
T 4gmv_A 228 CLVLKHPQIQKKSQYIKYLCCDDVRTLHQWVNGIRIAKY 266 (281)
T ss_dssp EEEEECTTCCSCCTTCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred EEEEecCccCCCCCceEEEEeCCHHHHHHHHHHHHHHhh
Confidence 8888777642 399999999999999999988764
No 64
>1dyn_A Dynamin; signal transduction protein; 2.20A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dyn_A 3zys_C 2ys1_A
Probab=92.53 E-value=0.18 Score=40.35 Aligned_cols=60 Identities=17% Similarity=0.266 Sum_probs=44.4
Q ss_pred CCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeecccc-------ceeeeecChhHHHHHHHHH-HHH
Q 041344 4 NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKK-------DYFLCAETPGAARAWVSTL-HAA 68 (236)
Q Consensus 4 ~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK-------~yfLcAETp~aaraWvstl-~At 68 (236)
.|..++|.|-+|..+---+.| +|.+ .-=||-|-+|-.+ .|+|||+|+..-..|++-+ ||.
T Consensus 49 ~eke~~G~IpL~~~~vr~v~~-~~~~----rk~~F~l~~~d~r~v~~~h~~y~LsA~t~ee~~~Wi~s~~ra~ 116 (125)
T 1dyn_A 49 EEKEKKYMLSVDNLKLRDVEK-GFMS----SKHIFALFNTEQRNVYKDYRQLELACETQEEVDSWKASFLRAG 116 (125)
T ss_dssp TCSCEEEEEECTTEEEEECCS-CSSS----SCEEEEEEETTSSCSSTTCSSEEEEESSHHHHHHHHHHHHHTT
T ss_pred cccccceEEECCCceEeccCC-CCCC----CceEEEEECCCCccccccceEEEEeCCCHHHHHHHHHHHHhCc
Confidence 477899999997655333333 2222 3459999888643 7999999999999999988 764
No 65
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}
Probab=92.38 E-value=0.14 Score=39.90 Aligned_cols=56 Identities=18% Similarity=0.268 Sum_probs=39.8
Q ss_pred CCcceeEEeecCceeeeeccccCCCCCccceeEEeeec-cccceeeeecChhHHHHHHHHHHHH
Q 041344 6 PTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTP-QKKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 6 ~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtp-qkK~yfLcAETp~aaraWvstl~At 68 (236)
..|.|.|.+ .+.+|.. | . .|+ .-=||.|-+| ....|.|.|+|+..+..|+.-|+.+
T Consensus 54 ~~P~~~i~L-~g~~V~~-~-e---~~~-~~~~F~L~~~~~G~~Y~fqA~s~~~~~~W~~ai~~a 110 (126)
T 2dtc_A 54 STPGKKVSI-VGWMVQL-P-D---DPE-HPDIFQLNNPDKGNVYKFQTGSRFHAILWHKHLDDA 110 (126)
T ss_dssp SSCSEEEEC-TTCEEEC-C-C---CTT-STTEEEEECTTSCSEEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCceEEe-CCCEEEe-c-C---CCC-CCCEEEEeeCCCCCEEEEeCCCHHHHHHHHHHHHHH
Confidence 356777776 3455542 1 1 121 1238999999 5677999999999999999998764
No 66
>3gwk_C SAG1039, putative uncharacterized protein SAG1039; WXG motif, four-helical bundle, viral protein; 1.30A {Streptococcus agalactiae serogroup V} PDB: 3gvm_A 3o9o_A
Probab=90.33 E-value=3.2 Score=28.64 Aligned_cols=81 Identities=11% Similarity=0.160 Sum_probs=52.6
Q ss_pred HHhhhccchHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH-----HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHh
Q 041344 141 MKETLRVKDEELQNLARDLRARDSTIRDIADKLSETAEAAEA-----AASAAHTMDEQRRIACAEIERINKESTKQLETC 215 (236)
Q Consensus 141 mkEtLrVKDeEl~~LardlraRD~tIkeiadkLseTAeAAEa-----AAsaaH~~de~r~~~~sEierL~~~~~~q~~~~ 215 (236)
|+-.++|..|+|++.|.+++.--..|.++-+.|...-+.-.+ |+.+-+..=.+.+-....+..+-.+..+++...
T Consensus 2 MM~~i~V~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~l~~~W~G~a~~aF~~~~~~~~~~~~~~~~~L~~i~~~L~~~ 81 (98)
T 3gwk_C 2 AMSQIKLTPEELRSSAQKYTAGSQQVTEVLNLLTQEQAVIDENWDGSTFDSFEAQFNELSPKITEFAQLLEDINQQLLKV 81 (98)
T ss_dssp HHHHBCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHBCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778899999999999999999988888888888776655432 222223333334444444445555555555555
Q ss_pred hhhhhh
Q 041344 216 VLKVNF 221 (236)
Q Consensus 216 ~l~lk~ 221 (236)
.-+..+
T Consensus 82 a~~~~~ 87 (98)
T 3gwk_C 82 ADIIEQ 87 (98)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 544443
No 67
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=88.21 E-value=0.43 Score=40.47 Aligned_cols=63 Identities=13% Similarity=0.140 Sum_probs=39.0
Q ss_pred CCCCcceeEEeecCceeeeeccccCCCCCccceeEEeeeccccce---eeeecChhHHHHHHHHHHHHH
Q 041344 4 NEPTVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDY---FLCAETPGAARAWVSTLHAAQ 69 (236)
Q Consensus 4 ~e~~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~y---fLcAETp~aaraWvstl~Atq 69 (236)
.+..++|.|.+...+.+...++.-.+ --.+||.|-+|+.+.+ .+++|||.....|+..|+.+.
T Consensus 42 ~~~~~~~~i~l~~~~~~~~~~~~~~~---~~~~~f~I~~~~~~~~~~r~~~~~~~ee~e~W~~ai~~~i 107 (446)
T 4ejn_A 42 PQDVDQREAPLNNFSVAQCQLMKTER---PRPNTFIIRCLQWTTVIERTFHVETPEEREEWTTAIQTVA 107 (446)
T ss_dssp C-------CCCGGGBCTTCEEEEECS---SSTTEEEEEEEETTEEEEEEEECSSHHHHHHHHHHHHHHC
T ss_pred CCCCccCcccccCccccceeecCCCC---CCCceeEEEcCCCceeeeeEEecCCHHHHHHHHHHHHhhh
Confidence 34456677777665544333322221 1246999999988776 789999999999999997763
No 68
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=87.99 E-value=4.3 Score=29.00 Aligned_cols=81 Identities=12% Similarity=0.079 Sum_probs=56.7
Q ss_pred HHHhhhccchHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH-------HHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 041344 140 IMKETLRVKDEELQNLARDLRARDSTIRDIADKLSETAEAAEA-------AASAAHTMDEQRRIACAEIERINKESTKQL 212 (236)
Q Consensus 140 imkEtLrVKDeEl~~LardlraRD~tIkeiadkLseTAeAAEa-------AAsaaH~~de~r~~~~sEierL~~~~~~q~ 212 (236)
.|...++|..++|++.+.+|+.-...|.+.-+.|.-..+.-.+ |+.+-+..-.+++....++..+-.++..++
T Consensus 4 ~Ma~~i~v~~~~l~~~a~~~~~~~~~i~~~l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~~i~~~l 83 (103)
T 4i0x_B 4 HVESEFSFDLDHIEQVTSRARGFKEFVTENLDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLSQMEEAA 83 (103)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778899999999999999999988888777766544443322 455556667777888888888888887777
Q ss_pred hHhhhhhh
Q 041344 213 ETCVLKVN 220 (236)
Q Consensus 213 ~~~~l~lk 220 (236)
..+.-...
T Consensus 84 ~~a~~~y~ 91 (103)
T 4i0x_B 84 RTAHGAYS 91 (103)
T ss_dssp HHHHTCC-
T ss_pred HHHHHHHH
Confidence 76654433
No 69
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}
Probab=87.97 E-value=0.41 Score=41.74 Aligned_cols=37 Identities=11% Similarity=0.367 Sum_probs=32.9
Q ss_pred eeEEeeeccccceeeeecChhHHHHHHHHHHHHHHHH
Q 041344 36 CCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQLVL 72 (236)
Q Consensus 36 CCfyIgtpqkK~yfLcAETp~aaraWvstl~AtqlVl 72 (236)
.||.|-||...+|+|.|+++..+..|+..|+.+....
T Consensus 90 ~vF~L~t~~g~~yLFQA~s~eEm~~WI~aI~~a~~~~ 126 (279)
T 3a8n_A 90 FVFCLSNSLGDAFLFQTTSQTELENWITAIHSACAAA 126 (279)
T ss_dssp SCCCEEETTTEEEECCCSCHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCEEEEeCCCHHHHHHHHHHHHHHHhhh
Confidence 5999999999999999999999999999998665433
No 70
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=87.55 E-value=0.78 Score=34.04 Aligned_cols=35 Identities=31% Similarity=0.382 Sum_probs=27.0
Q ss_pred CCCcHHHHHhhhccchHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 041344 134 PMDDLSIMKETLRVKDEELQNLARDLRARDSTIRDIADKLSE 175 (236)
Q Consensus 134 ~~Ddl~imkEtLrVKDeEl~~LardlraRD~tIkeiadkLse 175 (236)
.|..+.-+++.|+.|||| ||.||..|+++=.+|.|
T Consensus 17 ~mgti~eLq~~L~~K~eE-------Lr~kd~~I~eLEk~L~e 51 (72)
T 3nmd_A 17 GRGSLRDLQYALQEKIEE-------LRQRDALIDELELELDQ 51 (72)
T ss_dssp --CHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence 367788889999999998 56688888888777765
No 71
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=85.13 E-value=6.8 Score=26.52 Aligned_cols=39 Identities=13% Similarity=0.319 Sum_probs=32.6
Q ss_pred HHhhhccchHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Q 041344 141 MKETLRVKDEELQNLARDLRARDSTIRDIADKLSETAEA 179 (236)
Q Consensus 141 mkEtLrVKDeEl~~LardlraRD~tIkeiadkLseTAeA 179 (236)
|+-.++|..|+|++.|.+++.--..|.++-..|...-+.
T Consensus 3 mm~~i~v~~e~l~~~A~~~~~~~~~i~~~l~~L~~~~~~ 41 (93)
T 4ioe_A 3 AMAEIKITPEELERIAGNFKNAAGEAQSQINRLEGDINS 41 (93)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667899999999999999999888888888888766554
No 72
>1dbh_A Protein (human SOS 1); guanine nucleotide exchange factor, gene regulation; 2.30A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1pms_A 1awe_A
Probab=85.04 E-value=1.2 Score=37.16 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=31.6
Q ss_pred cceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344 34 DGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ 69 (236)
Q Consensus 34 DgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq 69 (236)
..++|.|..+..+.|.|+|.|+..-..|+..|+-++
T Consensus 313 ~~~~F~i~~~~~~~~~l~a~s~~ek~~W~~~i~~~~ 348 (354)
T 1dbh_A 313 YKHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQ 348 (354)
T ss_dssp CCSEEEECCTTSCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCccEEEecCCCCEEEEEeCCHHHHHHHHHHHHHHH
Confidence 358999998876789999999999999999997664
No 73
>2rgn_B RHOA/RAC/CDC42 exchange factor; heterotrimeric G-protein, small molecular weight G-protein, complex, protein-protein complex, rhogef, galphaq; HET: GDP; 3.50A {Homo sapiens}
Probab=82.76 E-value=2.4 Score=35.90 Aligned_cols=38 Identities=26% Similarity=0.579 Sum_probs=31.2
Q ss_pred CccceeEEeee--cc--ccceeeeecChhHHHHHHHHHHHHH
Q 041344 32 KYDGCCFYIGT--PQ--KKDYFLCAETPGAARAWVSTLHAAQ 69 (236)
Q Consensus 32 kYDgCCfyIgt--pq--kK~yfLcAETp~aaraWvstl~Atq 69 (236)
.-|.|+|.|-. |. .+.|.|+|.|+..-..|+..|+-+.
T Consensus 276 ~~~~~~F~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai 317 (354)
T 2rgn_B 276 QGDPCRFALTSRGPEGGIQRYVLQAADPAISQAWIKHVAQIL 317 (354)
T ss_dssp GGCTTEEEEEEECSSSCEEEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCceEEEEecCCCCCceEEEEECCCHHHHHHHHHHHHHHH
Confidence 34679999976 32 4679999999999999999997654
No 74
>1nty_A Triple functional domain protein; DBL, pleckstrin, GEF, RHO, GTPase, guanine-nucleotide releas factor, phosphorylation, signaling protein; 1.70A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 2nz8_B 2kr9_A
Probab=80.07 E-value=3.6 Score=33.86 Aligned_cols=49 Identities=16% Similarity=0.299 Sum_probs=34.3
Q ss_pred eeeeccccCCCCCccceeEEeee---c-cccceeeeecChhHHHHHHHHHHHH
Q 041344 20 IAISPVNFHGLPKYDGCCFYIGT---P-QKKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 20 itiSPvNf~g~~kYDgCCfyIgt---p-qkK~yfLcAETp~aaraWvstl~At 68 (236)
|.++-+.+...+.-|.|+|.|-+ | ..+.|-|+|.|+..-..|+..|+-+
T Consensus 254 i~l~~~~v~e~~~~~~~~F~i~~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~ 306 (311)
T 1nty_A 254 LFTSELGVTEHVEGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIREV 306 (311)
T ss_dssp EEGGGEEEECCCTTCTTEEEEEESSSCCTTTCEEEECSSHHHHHHHHHHHHHH
T ss_pred eeccceeeEEccCCCCceEEEEeCCCCCCCceEEEECCCHHHHHHHHHHHHHH
Confidence 33444444333334679999976 2 2355889999999999999999765
No 75
>1kz7_A Guanine nucleotide exchange factor DBS; guanine nucleotide exchange factor (GEF), small G-protein, signaling protein; 2.40A {Mus musculus} SCOP: a.87.1.1 b.55.1.1 PDB: 1lb1_A 1kzg_A 1rj2_A
Probab=79.88 E-value=5 Score=33.91 Aligned_cols=39 Identities=28% Similarity=0.313 Sum_probs=31.2
Q ss_pred CCCccceeEEeeecc-ccceeeeecChhHHHHHHHHHHHH
Q 041344 30 LPKYDGCCFYIGTPQ-KKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 30 ~~kYDgCCfyIgtpq-kK~yfLcAETp~aaraWvstl~At 68 (236)
.+.-|.|+|.|-... .+.|-|+|.|+..-..|+..|+-+
T Consensus 284 ~~~~~~~~F~i~~~~~~~~~~l~a~s~~ek~~W~~~i~~a 323 (353)
T 1kz7_A 284 NVKGDTKKFEIWYNAREEVYIIQAPTPEIKAAWVNAIRKV 323 (353)
T ss_dssp CBTTBTTEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEECCCCcEEEEECCCHHHHHHHHHHHHHH
Confidence 344478999997643 356999999999999999999754
No 76
>1xcg_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; X-RAY crystallography, regulation of RHOA GTPase, protein complex; 2.50A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 3kz1_A*
Probab=77.79 E-value=2.8 Score=35.10 Aligned_cols=36 Identities=28% Similarity=0.385 Sum_probs=30.0
Q ss_pred cceeEEeeecc----ccceeeeecChhHHHHHHHHHHHHH
Q 041344 34 DGCCFYIGTPQ----KKDYFLCAETPGAARAWVSTLHAAQ 69 (236)
Q Consensus 34 DgCCfyIgtpq----kK~yfLcAETp~aaraWvstl~Atq 69 (236)
|.++|+|-+.. .+.|-|+|.|+..-..|+..|+.+.
T Consensus 326 ~~~~f~i~~~~~~g~~~~~~l~a~s~~ek~~W~~~i~~ai 365 (368)
T 1xcg_A 326 DKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAV 365 (368)
T ss_dssp CSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEecCCCCceEEEEEcCCHHHHHHHHHHHHHHH
Confidence 66899987653 3569999999999999999998764
No 77
>2vs0_A Virulence factor ESXA; secreted, four helical bundle, cell invasion; 1.4A {Staphylococcus aureus} PDB: 2vrz_A
Probab=76.93 E-value=14 Score=24.80 Aligned_cols=79 Identities=18% Similarity=0.184 Sum_probs=53.0
Q ss_pred hhhccchHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH-----HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 041344 143 ETLRVKDEELQNLARDLRARDSTIRDIADKLSETAEAAEA-----AASAAHTMDEQRRIACAEIERINKESTKQLETCVL 217 (236)
Q Consensus 143 EtLrVKDeEl~~LardlraRD~tIkeiadkLseTAeAAEa-----AAsaaH~~de~r~~~~sEierL~~~~~~q~~~~~l 217 (236)
..++|..++|++.|.+++.--..|.++-+.|....+.-.. |+.+-+..-.+.+-...++..+-.++.+.+....-
T Consensus 2 ~~i~v~~~~l~~~A~~~~~~~~~l~~~l~~L~~~~~~L~~~W~G~a~~af~~~~~~~~~~~~~~~~~L~~i~~~L~~~a~ 81 (97)
T 2vs0_A 2 AMIKMSPEEIRAKSQSYGQGSDQIRQILSDLTRAQGEIAANWEGQAFSRFEEQFQQLSPKVEKFAQLLEEIKQQLNSTAD 81 (97)
T ss_dssp -CBCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999999999999999999999887776432 22233333335555555555555555566655554
Q ss_pred hhhh
Q 041344 218 KVNF 221 (236)
Q Consensus 218 ~lk~ 221 (236)
...+
T Consensus 82 ~y~~ 85 (97)
T 2vs0_A 82 AVQE 85 (97)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 4443
No 78
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=74.18 E-value=7 Score=31.46 Aligned_cols=52 Identities=21% Similarity=0.292 Sum_probs=34.7
Q ss_pred cceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeeeecChhHHHHHHHHHH
Q 041344 8 VKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLH 66 (236)
Q Consensus 8 ~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~ 66 (236)
..|+|.++.-+++.-++. .+. .=+|-|-|| .+.|+|++|||.....|+..|.
T Consensus 174 ~~g~~~~~~i~s~~~~~~--~~~----~~~f~iit~-~r~~~~~a~s~~e~~~Wi~~lq 225 (228)
T 3tfm_A 174 AVGTLDVGLIDSVCASDS--PDR----PNSFVIITA-NRVLHCNADTPEEMHHWITLLQ 225 (228)
T ss_dssp CSEEEEGGGEEEEEECCC--SSC----TTEEEEEET-TEEEEEECSSHHHHHHHHHHHC
T ss_pred ccccCChhheeccccCCC--CCC----CCcEEEEeC-CceEEEEcCCHHHHHHHHHHHh
Confidence 457776665555543332 221 127777776 5567789999999999998773
No 79
>1zc3_B Exocyst complex protein EXO84; exocytosis, small GTPase, GTP-binding protein,, signaling protein; HET: GNP; 2.00A {Rattus norvegicus} SCOP: b.55.1.1 PDB: 1zc4_B*
Probab=71.94 E-value=5.3 Score=29.77 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=28.4
Q ss_pred ceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344 35 GCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ 69 (236)
Q Consensus 35 gCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq 69 (236)
.=||.|.+++ +.+.++|||+..=..|.+.++=+.
T Consensus 73 ~n~f~i~~~~-~s~~~~aes~~eK~~Wl~~~~~a~ 106 (113)
T 1zc3_B 73 KDMFKLLMFP-ESRIFQAENAKIKREWLEVLEETK 106 (113)
T ss_dssp SSEEEEEETT-EEEEEECSSHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeCC-ceEEEEcCCHHHHHHHHHHHHHHH
Confidence 5589998765 568889999999999999997653
No 80
>1txd_A RHO guanine nucleotide exchange factor 12; helical bundle (DH), beta sandwich (PH), signaling protein; 2.13A {Homo sapiens} SCOP: a.87.1.1 b.55.1.1 PDB: 1x86_A
Probab=70.92 E-value=7.5 Score=32.86 Aligned_cols=40 Identities=18% Similarity=0.272 Sum_probs=29.9
Q ss_pred cceeEEeeecc---ccceeeeecChhHHHHHHHHHHHHHHHHH
Q 041344 34 DGCCFYIGTPQ---KKDYFLCAETPGAARAWVSTLHAAQLVLK 73 (236)
Q Consensus 34 DgCCfyIgtpq---kK~yfLcAETp~aaraWvstl~AtqlVlk 73 (236)
|.+.||+.++. .+.|-|+|.|+..-+.|+..|+-++--++
T Consensus 330 d~~~~f~i~~~~~~~~~~~l~a~s~~ek~~W~~~i~~~i~~~~ 372 (385)
T 1txd_A 330 DNKALFVISMSDNGAQIYELVAQTVSEKTVWQDLICRMAASVK 372 (385)
T ss_dssp -CCEEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEEEEcCCCceEEEEEcCCHHHHHHHHHHHHHHHHhcc
Confidence 55666666643 45699999999999999999987655443
No 81
>1fho_A UNC-89; pleckstrin homology domain, electrostatics, muscle, signal transduction, signaling protein; NMR {Caenorhabditis elegans} SCOP: b.55.1.1
Probab=70.55 E-value=2.6 Score=32.25 Aligned_cols=56 Identities=18% Similarity=0.175 Sum_probs=41.8
Q ss_pred cCceeeeeccccCCCCC-ccceeEEeeeccccc-eee--eecChh-HHHHHHHHHHHHHHH
Q 041344 16 ENSTIAISPVNFHGLPK-YDGCCFYIGTPQKKD-YFL--CAETPG-AARAWVSTLHAAQLV 71 (236)
Q Consensus 16 a~STitiSPvNf~g~~k-YDgCCfyIgtpqkK~-yfL--cAETp~-aaraWvstl~AtqlV 71 (236)
=-+.|.+|-+++.-... -|.|+|-|-.+...+ |++ -|-|+. .=.+|+.+|+-+|-.
T Consensus 53 ~K~~ikl~~~~lte~~~~~d~~kFeiw~~~~~~~~il~~qA~s~e~~K~~Wv~~I~~~~~~ 113 (119)
T 1fho_A 53 HYSSIRLDKYNIRQHTTDEDTIVLQPQEPGLPSFRIKPKDFETSEYVRKAWLRDIAEEQEK 113 (119)
T ss_dssp SCCEEESSSCEEEEECTTCCEEEEECCSTTCCCBCCCCCSSSSCSHHHHHHHHHHHTCCHH
T ss_pred EeeEEeeceeEEEecCCCCCCcEEEEccCCCCceEEEeeecCCcHHHHHHHHHHHHHHHHH
Confidence 34567777777665556 688999998888666 555 588999 999999999765543
No 82
>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D
Probab=69.93 E-value=15 Score=31.99 Aligned_cols=37 Identities=14% Similarity=0.363 Sum_probs=30.7
Q ss_pred ceeEEeeecc-ccceeeeecChhHHHHHHHHHHHHHHH
Q 041344 35 GCCFYIGTPQ-KKDYFLCAETPGAARAWVSTLHAAQLV 71 (236)
Q Consensus 35 gCCfyIgtpq-kK~yfLcAETp~aaraWvstl~AtqlV 71 (236)
.+||.|..+. .+.|.|||.|+..-..|+..|+-++.-
T Consensus 404 ~~~F~i~~~~~~~~~~l~a~s~~eK~~W~~~i~~a~~~ 441 (466)
T 2pz1_A 404 KNAFRLHRGATGDSHLLCTRKPEQKQRWLKAFAREREQ 441 (466)
T ss_dssp CEEEEEECSSSCCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEeCCCCeEEEEEeCCHHHHHHHHHHHHHHHHH
Confidence 3789998775 456999999999999999999876553
No 83
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=68.13 E-value=30 Score=26.18 Aligned_cols=56 Identities=20% Similarity=0.257 Sum_probs=41.5
Q ss_pred HHH-HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041344 151 ELQ-NLARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTK 210 (236)
Q Consensus 151 El~-~LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~~ 210 (236)
||| .|-.+|++++++-.|| +.+-.+--++.|=..--..+.+.+..||++|+++++.
T Consensus 14 eLQSALeaEIqAKQ~i~EEL----s~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 14 ELQEALEEEVLTRQSLSREM----EAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 3667889998866555 5555555556666667778889999999999999887
No 84
>2dfk_A Collybistin II; DH domain, PH domain, cell cycle; 2.15A {Rattus norvegicus} SCOP: a.87.1.1 b.55.1.1
Probab=64.49 E-value=9.9 Score=32.77 Aligned_cols=39 Identities=8% Similarity=0.228 Sum_probs=31.6
Q ss_pred ceeEEeeecc-ccceeeeecChhHHHHHHHHHHHHHHHHH
Q 041344 35 GCCFYIGTPQ-KKDYFLCAETPGAARAWVSTLHAAQLVLK 73 (236)
Q Consensus 35 gCCfyIgtpq-kK~yfLcAETp~aaraWvstl~AtqlVlk 73 (236)
.++|.|-.+. .+.|.|||.|+..-..|+..|+-++.-.+
T Consensus 327 ~~~F~i~~~~~~~~~~l~a~s~~eK~~Wi~~i~~a~~~~~ 366 (402)
T 2dfk_A 327 KNAFKLHNKETEEVHLFFAKKLEEKIRWLRAFREERKMVQ 366 (402)
T ss_dssp SSEEEEEESSSSCEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECCCCeEEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 3689998875 45699999999999999999987665443
No 85
>3fav_B ESAT-6, 6 kDa early secretory antigenic target; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_B
Probab=64.10 E-value=23 Score=24.05 Aligned_cols=74 Identities=7% Similarity=0.114 Sum_probs=46.7
Q ss_pred hccchHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH-----HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 041344 145 LRVKDEELQNLARDLRARDSTIRDIADKLSETAEAAE-----AAASAAHTMDEQRRIACAEIERINKESTKQLETCVLK 218 (236)
Q Consensus 145 LrVKDeEl~~LardlraRD~tIkeiadkLseTAeAAE-----aAAsaaH~~de~r~~~~sEierL~~~~~~q~~~~~l~ 218 (236)
|+|..++|+..+.+|+..-..|.++-+.|....+.-. .|+.+-+..-.+++....++..+-.++..++..+.-.
T Consensus 3 i~v~~~~l~~~a~~~~~~~~~i~~~l~~l~~~v~~l~~~W~G~A~~af~~~~~~w~~~~~~~~~~L~~i~~~l~~~~~~ 81 (94)
T 3fav_B 3 QQWNFAGIEAAASAIQGNVTSIHSLLDEGKQSLTKLAAAWGGSGSEAYQGVQQKWDATATELNNALQNLARTISEAGQA 81 (94)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGGTCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred eeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999998888888887766555432 2344455555666666677776666666666655443
No 86
>2ys3_A UNC-112-related protein 2; PH domain, kindlin-3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=61.31 E-value=9.4 Score=30.75 Aligned_cols=54 Identities=11% Similarity=0.238 Sum_probs=37.3
Q ss_pred CcceeEEeecCceeeeeccccCCCCCccceeEEeeecc---ccceeeeecChhHHHHHHHHHH
Q 041344 7 TVKGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQ---KKDYFLCAETPGAARAWVSTLH 66 (236)
Q Consensus 7 ~~kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpq---kK~yfLcAETp~aaraWvstl~ 66 (236)
.|-|.|.+..-. ++|-..+...|| ||-+-.|. -++|||.+||...-..|++-++
T Consensus 52 ePig~I~L~gce---V~pd~~~~~~kf---~ikl~iPs~~g~r~y~l~cdsEeqy~~WMaA~r 108 (137)
T 2ys3_A 52 DPIQQLNLKGCE---VVPDVNVSGQKF---CIKLLVPSPEGMSEIYLRCQDEQQYARWMAGCR 108 (137)
T ss_dssp CCSCCBCTTTCE---EEECCBGGGTBE---EEEEEEECSSSEEEEEEEESSHHHHHHHHHHHH
T ss_pred CCceEEECCCCE---EeccccccCCce---EEEEEccCCCCceEEEEECCCHHHHHHHHHHHH
Confidence 688888887633 666643332222 44445553 3889999999999999999764
No 87
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Probab=59.93 E-value=5.9 Score=39.06 Aligned_cols=83 Identities=13% Similarity=0.165 Sum_probs=48.8
Q ss_pred CCccceeEEeeeccc-cce---eeeecChhHHHHHHHHHHHHHHH------------HHHHHHHhhhcCCCCcccchhHH
Q 041344 31 PKYDGCCFYIGTPQK-KDY---FLCAETPGAARAWVSTLHAAQLV------------LKAHKEAVNSLSGNGSAKLGTVA 94 (236)
Q Consensus 31 ~kYDgCCfyIgtpqk-K~y---fLcAETp~aaraWvstl~AtqlV------------lkAHKEAvnslsgNg~akLGtVA 94 (236)
..++.|||.|..-.. +.+ -|+|.++..|+.|+..|++-..- .+++....=..-|+|.-..-.+.
T Consensus 99 ~~~e~r~fTIvyg~~~~nL~~l~LvA~s~e~A~~W~~gL~~L~~~~~~~~~~~~~~~~~~~~~~~fd~n~dG~Is~kEl~ 178 (816)
T 3qr0_A 99 IPLQDKCVTICHGYNYIDLEWTHLVAENSSVAKKWSEEVFSYAYNLLSLNKNQLGEWEKLYFRLTTVEMEKNKIPVKAIQ 178 (816)
T ss_dssp SCHHHHEEEEEECSSSSSCEEEEEEESSHHHHHHHHHHHHHHHTCHHHHTCCHHHHHHHHHHHHHHTSCCSSEEEHHHHH
T ss_pred ccccccEEEEEECCCcccceEEEEeeCCHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHhccCCCCCCCCHHHHH
Confidence 356899999977543 233 79999999999999999763211 12222111123456665555666
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHH
Q 041344 95 TVVAAANSTAQECSKEIEAAMQI 117 (236)
Q Consensus 95 tvVAaAN~ta~Ea~keieaaMqi 117 (236)
.++..-. .+ .++|+..++.
T Consensus 179 ~~l~~~~---~~-~~el~~~~~~ 197 (816)
T 3qr0_A 179 KCLSKDK---DD-RARISKALEK 197 (816)
T ss_dssp HHHCSCH---HH-HHHHHHHHHH
T ss_pred HHHHhcC---Ch-HHHHHHHHHH
Confidence 5554321 22 3456655544
No 88
>3t06_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; DH-PH RHOA complex, pdzrhogef, guanine nucleotide exchange F RHOA, signaling protein; 2.84A {Homo sapiens}
Probab=58.01 E-value=9.9 Score=32.41 Aligned_cols=40 Identities=25% Similarity=0.291 Sum_probs=31.6
Q ss_pred CccceeEEeeecc----ccceeeeecChhHHHHHHHHHHHHHHH
Q 041344 32 KYDGCCFYIGTPQ----KKDYFLCAETPGAARAWVSTLHAAQLV 71 (236)
Q Consensus 32 kYDgCCfyIgtpq----kK~yfLcAETp~aaraWvstl~AtqlV 71 (236)
.-|.+.|+|.... ...|-|.|.|+..-..|+..|+.+...
T Consensus 366 ~~~~~~f~l~~~~~~~~~~~~~l~A~s~~ek~~W~~~I~~a~~~ 409 (418)
T 3t06_A 366 ATDKRAFFIICTSKLGPPQIYELVALTSSDKNTWMELLEEAVRN 409 (418)
T ss_dssp SSCSSEEEEEECCSSSTTCEEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred cccCceEEEEecCCCCCceEEEEEcCCHHHHHHHHHHHHHHHhc
Confidence 3577888887643 246999999999999999999776543
No 89
>1ucu_A Phase 1 flagellin; flagellar filament, cryo-electron microscopy, helical reconstruction, structural protein; 4.00A {Salmonella typhimurium} SCOP: e.32.1.1 PDB: 3a5x_A
Probab=57.71 E-value=75 Score=29.15 Aligned_cols=101 Identities=16% Similarity=0.205 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHH-hhhccccccCCCCCCCcHHHHH--hhhccchHHHHHHHHH-------hhhhhhhHHHHHHHHHHHHH
Q 041344 109 KEIEAAMQISLR-NALGTMTNRITDGPMDDLSIMK--ETLRVKDEELQNLARD-------LRARDSTIRDIADKLSETAE 178 (236)
Q Consensus 109 keieaaMqiS~r-~alg~~~n~~~~g~~Ddl~imk--EtLrVKDeEl~~Lard-------lraRD~tIkeiadkLseTAe 178 (236)
...+..|.-++. -+.|...|++.| |+.-+- +.||-.-..|.|..|. |..-|..+.++.+-|+..-|
T Consensus 18 ~~~~~~l~~~~~~lSSG~rIn~asD----Dpag~aia~~l~~~i~~l~q~~~N~~~~~s~lqtae~aL~~i~~~Lqr~re 93 (494)
T 1ucu_A 18 NKSQSALGTAIERLSSGLRINSAKD----DAAGQAIANRFTANIKGLTQASRNANDGISIAQTTEGALNEINNNLQRVRE 93 (494)
T ss_dssp HHHHHHHHHHHHHHHTSCCTTTSCS----SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCccCCccc----cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444443 367777777765 444433 3344444455555444 44567778899999999999
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 041344 179 AAEAAASAAHTMDEQRRIACAEIERINKESTKQLET 214 (236)
Q Consensus 179 AAEaAAsaaH~~de~r~~~~sEierL~~~~~~q~~~ 214 (236)
-+..|+....+ ++.|..+-.||+.|+.++.+-...
T Consensus 94 lavqaangt~s-~~dr~ai~~Ei~~l~~ei~~ian~ 128 (494)
T 1ucu_A 94 LAVQSANSTNS-QSDLDSIQAEITQRLNEIDRVSGQ 128 (494)
T ss_dssp HHHHHTCTTCC-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99888876654 678999999999999999887663
No 90
>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B
Probab=54.80 E-value=2.6 Score=36.46 Aligned_cols=38 Identities=26% Similarity=0.353 Sum_probs=0.0
Q ss_pred CccceeEEeeeccccceeeeecChhHHHHHHHHHHHHHH
Q 041344 32 KYDGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQL 70 (236)
Q Consensus 32 kYDgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atql 70 (236)
..+.|||-|..+. +.|.|.|.|+.....|+..|+.++.
T Consensus 325 ~~~~~~F~i~~~~-~~~~l~a~s~~ek~~W~~~i~~ai~ 362 (510)
T 3jzy_A 325 SSDEPVFHISHID-RVYTLRTDNINERTAWVQKIKAASE 362 (510)
T ss_dssp ---------------------------------------
T ss_pred Cccccceeeeccc-eeEEeccCCHHHHHHHHHHHHHHHH
Confidence 3467999998765 5799999999999999999976654
No 91
>3fd4_A Glycoprotein GP42; C type lectin, virus entry, membrane fusion, HOST-virus interaction, lectin, membrane, transmembrane, viral protein; 2.40A {Human herpesvirus 4} PDB: 1kg0_C
Probab=53.58 E-value=2.4 Score=36.48 Aligned_cols=13 Identities=62% Similarity=1.546 Sum_probs=10.1
Q ss_pred CccceeEEeeeccc
Q 041344 32 KYDGCCFYIGTPQK 45 (236)
Q Consensus 32 kYDgCCfyIgtpqk 45 (236)
-|++||||. ||++
T Consensus 78 s~~~~CyYf-tp~k 90 (191)
T 3fd4_A 78 SYKGCCFYF-TKKK 90 (191)
T ss_dssp EETTEEEEE-CSSC
T ss_pred EecceEEEe-Cccc
Confidence 378999996 6666
No 92
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=53.50 E-value=18 Score=30.78 Aligned_cols=37 Identities=16% Similarity=0.221 Sum_probs=30.2
Q ss_pred ceeEEeeec-cccceeeeecChhHHHHHHHHHHHHHHH
Q 041344 35 GCCFYIGTP-QKKDYFLCAETPGAARAWVSTLHAAQLV 71 (236)
Q Consensus 35 gCCfyIgtp-qkK~yfLcAETp~aaraWvstl~AtqlV 71 (236)
.++|+|-.. ..+.|-|+|+|+..-..|+..|+.+..-
T Consensus 299 ~~~F~i~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai~~ 336 (406)
T 2vrw_B 299 SHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAISN 336 (406)
T ss_dssp CEEEEEEETTCSCEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred ceeeEEEecCCCceEEEeCCCHHHHHHHHHHHHHHHhh
Confidence 489998764 3456999999999999999999876543
No 93
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=52.98 E-value=25 Score=26.50 Aligned_cols=61 Identities=13% Similarity=0.139 Sum_probs=37.3
Q ss_pred cchHHHHHH--HHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 041344 147 VKDEELQNL--ARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKE 207 (236)
Q Consensus 147 VKDeEl~~L--ardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~ 207 (236)
..++++..| .+.+|.-.-+++||.+-|....+...........+++++..+-.+|++|++.
T Consensus 39 Y~~~dl~~l~~I~~lr~~G~sl~eI~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~ 101 (135)
T 1q06_A 39 YTQQHLNELTLLRQARQVGFNLEESGELVNLFNDPQRHSADVKRRTLEKVAEIERHIEELQSM 101 (135)
T ss_dssp CCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHHHCCCCHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555544 3566777889999998886432211122233456777888888777777543
No 94
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=52.12 E-value=9.6 Score=28.19 Aligned_cols=32 Identities=28% Similarity=0.466 Sum_probs=27.3
Q ss_pred HhhhccchHHHHHHHHHhhhhhhhHHHHHHHH
Q 041344 142 KETLRVKDEELQNLARDLRARDSTIRDIADKL 173 (236)
Q Consensus 142 kEtLrVKDeEl~~LardlraRD~tIkeiadkL 173 (236)
-|.||.||+-|..|-..|..+|..|+++=..|
T Consensus 32 ~eELr~kd~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 32 IEELRQRDALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47899999999999999999999999875544
No 95
>1foe_A T-lymphoma invasion and metastasis inducing protein 1; DBL homology domain, pleckstrin homology domain, GTPase, guanine nucleotide exchange factor; 2.80A {Mus musculus} SCOP: a.87.1.1 b.55.1.1
Probab=51.43 E-value=23 Score=29.75 Aligned_cols=24 Identities=17% Similarity=0.674 Sum_probs=20.9
Q ss_pred ccceeeeecChhHHHHHHHHHHHH
Q 041344 45 KKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 45 kK~yfLcAETp~aaraWvstl~At 68 (236)
.+.|.|||.|+..=..|+..|.-+
T Consensus 341 ~~~~~l~A~s~~eK~~W~~~i~~~ 364 (377)
T 1foe_A 341 ERVFHLCCSSPESRKDFLKSVHSI 364 (377)
T ss_dssp CEEEEEEESSHHHHHHHHHHHHHH
T ss_pred cceEEEEeCCHHHHHHHHHHHHHH
Confidence 356999999999999999999654
No 96
>3k8w_A Flagellin homolog; flagellum, structural protein, bacterial flagellu; 1.70A {Sphingomonas SP} PDB: 2zbi_A 3k8v_A
Probab=50.54 E-value=30 Score=31.21 Aligned_cols=91 Identities=19% Similarity=0.254 Sum_probs=55.1
Q ss_pred HhhhccccccCCCCCCCcHHHHHhhhccchHHHHHHHHH-------hhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 041344 120 RNALGTMTNRITDGPMDDLSIMKETLRVKDEELQNLARD-------LRARDSTIRDIADKLSETAEAAEAAASAAHTMDE 192 (236)
Q Consensus 120 r~alg~~~n~~~~g~~Ddl~imkEtLrVKDeEl~~Lard-------lraRD~tIkeiadkLseTAeAAEaAAsaaH~~de 192 (236)
|-+.|...|++.|.|..-..+ +.||-.-..|.|..|. |..-|..+.++-+-|+..-|-+..|+....+ ++
T Consensus 11 qLSSGkRInsaSDDPag~aia--~~L~sqi~~l~Q~~rN~~da~S~LqtAE~AL~~i~diLqrmRELaVQAaNgT~s-~~ 87 (326)
T 3k8w_A 11 RLSSGLRINSAKDDAAGLAIS--DRMTAQIKGLTQAQRNANDGISLAQTAEGALGEISNNLQRIRELAVQASNGTNT-QT 87 (326)
T ss_dssp -------------CHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCC-HH
T ss_pred HHhhcCccCCcccCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-HH
Confidence 445666677776544433222 2344334445555544 3456778889999999999999888876654 78
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 041344 193 QRRIACAEIERINKESTKQLE 213 (236)
Q Consensus 193 ~r~~~~sEierL~~~~~~q~~ 213 (236)
.|..+-.||+.|++++..-..
T Consensus 88 DR~aIa~Ei~qL~~eI~~iAN 108 (326)
T 3k8w_A 88 DRDALQAEVTQLQSEIQRVAE 108 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999887665
No 97
>2z0q_A XPLN, RHO guanine nucleotide exchange factor 3; DH-PH domain, alternative splicing, cytoplasm, guanine- nucleotide releasing factor; 1.79A {Mus musculus} PDB: 3eo2_A
Probab=49.46 E-value=20 Score=29.65 Aligned_cols=35 Identities=17% Similarity=0.244 Sum_probs=28.7
Q ss_pred ceeEEeeec---cccceeeeecChhHHHHHHHHHHHHH
Q 041344 35 GCCFYIGTP---QKKDYFLCAETPGAARAWVSTLHAAQ 69 (236)
Q Consensus 35 gCCfyIgtp---qkK~yfLcAETp~aaraWvstl~Atq 69 (236)
..+|.|.+. +.+.|-|+|.|+..-..|+..|+-+.
T Consensus 308 ~~~F~i~~~~~~~~~~~~l~a~s~~ek~~W~~~i~~ai 345 (346)
T 2z0q_A 308 KNFFRVSFKNGSQSQTHSLQANDTFNKQQWLNCIRQAK 345 (346)
T ss_dssp SSEEEEEECCGGGCEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred ccceEEEEecCCCCceEEEEECCHHHHHHHHHHHHHhh
Confidence 368999753 35679999999999999999997653
No 98
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=48.82 E-value=23 Score=30.20 Aligned_cols=35 Identities=20% Similarity=0.225 Sum_probs=29.7
Q ss_pred cceeEEeeeccccceeeeecChhHHHHHHHHHHHHH
Q 041344 34 DGCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQ 69 (236)
Q Consensus 34 DgCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atq 69 (236)
...+|.|.+|.+ .|.|+|.|+..-..|+..|..+.
T Consensus 302 ~~~~f~i~~~~~-~~~l~a~s~~ek~~W~~~i~~ai 336 (434)
T 3mpx_A 302 VPYALKIETSES-CLMLSASSCAERDEWYGCLSRAL 336 (434)
T ss_dssp SCSEEEEECSSC-EEEEECSSHHHHHHHHHHHHHC-
T ss_pred CCeeEEEecCCe-EEEEecCCHHHHHHHHHHHHHHH
Confidence 458999988765 69999999999999999997664
No 99
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Probab=48.27 E-value=15 Score=36.71 Aligned_cols=37 Identities=11% Similarity=0.134 Sum_probs=28.6
Q ss_pred CCccceeEEeeeccc-c---ceeeeecChhHHHHHHHHHHH
Q 041344 31 PKYDGCCFYIGTPQK-K---DYFLCAETPGAARAWVSTLHA 67 (236)
Q Consensus 31 ~kYDgCCfyIgtpqk-K---~yfLcAETp~aaraWvstl~A 67 (236)
+..+.|||.|..-.. + -+.|+|.+...|+.|+..|++
T Consensus 96 ~~~e~r~fTIvyg~d~~n~~~LdLVA~s~e~a~~W~~gL~~ 136 (885)
T 3ohm_B 96 ARLEEKLMTVVSGPDPVNTVFLNFMAVQDDTAKVWSEELFK 136 (885)
T ss_dssp ---CTTEEEEEECSSGGGCEEEEEEESSSSHHHHHHHHHHH
T ss_pred CcccccEEEEEECCCCccceEEEEEeCChHHHHHHHHHHHH
Confidence 457799999976433 3 378999999999999999976
No 100
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=48.22 E-value=39 Score=25.91 Aligned_cols=61 Identities=18% Similarity=0.168 Sum_probs=37.4
Q ss_pred chHHHHHH--HHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 041344 148 KDEELQNL--ARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKES 208 (236)
Q Consensus 148 KDeEl~~L--ardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~ 208 (236)
.++++..| .+.||.-.-+|+||.+-|.-..+...........+.+++..+..+|++|++.+
T Consensus 56 ~~~dl~~l~~I~~lr~~G~sL~eIk~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~L~~~~ 118 (148)
T 3gpv_A 56 NEEALKYLEMILCLKNTGMPIQKIKQFIDWSMEGDSTILHRLKLMKQQEANVLQLIQDTEKNL 118 (148)
T ss_dssp CHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555544 46677778899999888763322222222334566777877777777776543
No 101
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Probab=47.47 E-value=17 Score=35.47 Aligned_cols=37 Identities=8% Similarity=0.053 Sum_probs=29.5
Q ss_pred CccceeEEeeeccc----cceeeeecChhHHHHHHHHHHHH
Q 041344 32 KYDGCCFYIGTPQK----KDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 32 kYDgCCfyIgtpqk----K~yfLcAETp~aaraWvstl~At 68 (236)
....|||.|..-.. |.+-|+|.++..|+.|+..|++-
T Consensus 93 ~~e~~~fTIvyg~~~~~l~~L~lvA~s~~ea~~Wv~GL~~L 133 (799)
T 2zkm_X 93 SFLLKTLTVVSGPDMVDLTFHNFVSYKENVGKAWAEDVLAL 133 (799)
T ss_dssp CGGGTEEEEEECSSSSSCEEEEEEESSSSHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCccceeEEEEEeCCHHHHHHHHHHHHHH
Confidence 35789998866432 34689999999999999999863
No 102
>3p6a_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 2.50A {Homo sapiens} PDB: 3odo_A
Probab=47.06 E-value=11 Score=31.42 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=27.5
Q ss_pred cceeEEeeecc---ccceeeeecChhHHHHHHHHHHHHHH
Q 041344 34 DGCCFYIGTPQ---KKDYFLCAETPGAARAWVSTLHAAQL 70 (236)
Q Consensus 34 DgCCfyIgtpq---kK~yfLcAETp~aaraWvstl~Atql 70 (236)
|.++||+.... ..-|-|.|.|+..-..|+..|+-+.-
T Consensus 332 ~~~~~~~i~~~~~~~~~~~l~A~s~~ek~~W~~~I~~ai~ 371 (377)
T 3p6a_A 332 DHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETAG 371 (377)
T ss_dssp CTTEEEEEETTCTTCCEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred ccceeEEEecCCCCCeeEEEecCCHHHHHHHHHHHHHHHH
Confidence 45666665542 23488999999999999999976653
No 103
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=45.68 E-value=3.5 Score=29.05 Aligned_cols=7 Identities=43% Similarity=1.844 Sum_probs=6.0
Q ss_pred cceeEEe
Q 041344 34 DGCCFYI 40 (236)
Q Consensus 34 DgCCfyI 40 (236)
+-|||||
T Consensus 46 e~CC~yi 52 (53)
T 1y4m_A 46 EKCCFWV 52 (53)
T ss_dssp SCCCCCC
T ss_pred Cchhccc
Confidence 5699998
No 104
>3odw_A RHO guanine nucleotide exchange factor 1; regulation of RHOA GTPase, rhogef, DH, PH, signaling PR; 3.20A {Homo sapiens} PDB: 3odx_A
Probab=44.92 E-value=22 Score=32.29 Aligned_cols=37 Identities=22% Similarity=0.334 Sum_probs=28.9
Q ss_pred ccceeEEeeecc---ccceeeeecChhHHHHHHHHHHHHH
Q 041344 33 YDGCCFYIGTPQ---KKDYFLCAETPGAARAWVSTLHAAQ 69 (236)
Q Consensus 33 YDgCCfyIgtpq---kK~yfLcAETp~aaraWvstl~Atq 69 (236)
.|.++||+.... ...|-|+|.|+..-..|+..|+-+.
T Consensus 484 ~d~~~ffli~~~~~~~~~~~L~A~S~eEK~~W~~~I~~aI 523 (536)
T 3odw_A 484 TDHKAFYVLFTWDQEAQIYELVAQTVSERKNWCALITETA 523 (536)
T ss_dssp TCTTEEEEEEC---CCCEEEEECSSHHHHHHHHHHHHHHH
T ss_pred ccCCceEEEecCCCCceEEEEECCCHHHHHHHHHHHHHHH
Confidence 467788887652 2459999999999999999996553
No 105
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=44.76 E-value=13 Score=27.09 Aligned_cols=32 Identities=25% Similarity=0.549 Sum_probs=23.5
Q ss_pred HhhhccchHHHHHHHHHhhhhhhhHHHHHHHH
Q 041344 142 KETLRVKDEELQNLARDLRARDSTIRDIADKL 173 (236)
Q Consensus 142 kEtLrVKDeEl~~LardlraRD~tIkeiadkL 173 (236)
.+-|+.||+-+..|..+|+.+|..|+++=..|
T Consensus 17 ~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~L 48 (67)
T 1zxa_A 17 AKILMLKEERIKELEKRLSEKEEEIQELKRKL 48 (67)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577788888888888888888887765444
No 106
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=44.40 E-value=58 Score=23.36 Aligned_cols=57 Identities=21% Similarity=0.299 Sum_probs=37.9
Q ss_pred cchHHHHHH--HHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 041344 147 VKDEELQNL--ARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKEST 209 (236)
Q Consensus 147 VKDeEl~~L--ardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~ 209 (236)
..++++..| .+.+|.-.-+++||.+-|.... ......+++++..+..+|++|.+..+
T Consensus 40 Y~~~dl~~l~~I~~lr~~G~sl~~I~~~l~~~~------~~~~~~l~~~~~~l~~~i~~l~~~~~ 98 (108)
T 2vz4_A 40 YSDADLDRLQQILFYRELGFPLDEVAALLDDPA------ADPRAHLRRQHELLSARIGKLQKMAA 98 (108)
T ss_dssp BCHHHHHHHHHHHHHHHTTCCHHHHHHHHTC-----------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHCCCCHHHHHHHHhCCc------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555544 4667777889999998886432 13456788888888888888876543
No 107
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=43.61 E-value=51 Score=25.23 Aligned_cols=58 Identities=21% Similarity=0.278 Sum_probs=32.9
Q ss_pred hHHHHH--HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 041344 149 DEELQN--LARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINK 206 (236)
Q Consensus 149 DeEl~~--LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~ 206 (236)
++++.. +.+.||.-.-+|+||.+-|....+...........+.+++..+..+|++|.+
T Consensus 43 ~~dl~~l~~I~~lr~~G~sL~eIk~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~ 102 (142)
T 3gp4_A 43 AEDLRWILFTRQMRRAGLSIEALIDYLALFREGEHTLEARAELLKKQRIELKNRIDVMQE 102 (142)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344443 3456777788888888877643222112222234556677777666666554
No 108
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=43.55 E-value=4 Score=28.97 Aligned_cols=7 Identities=43% Similarity=1.326 Sum_probs=6.0
Q ss_pred cceeEEe
Q 041344 34 DGCCFYI 40 (236)
Q Consensus 34 DgCCfyI 40 (236)
.-|||||
T Consensus 48 e~CCfyi 54 (55)
T 1mof_A 48 EECAFYA 54 (55)
T ss_dssp SCCCCCC
T ss_pred Cchhccc
Confidence 5699998
No 109
>3fav_A ESAT-6-like protein ESXB; complex, operon structure, four-helical-bundle, coiled-coil, WXG-motif, secreted; 2.15A {Mycobacterium tuberculosis} SCOP: a.25.3.1 PDB: 1wa8_A
Probab=43.54 E-value=78 Score=21.84 Aligned_cols=80 Identities=14% Similarity=0.153 Sum_probs=46.1
Q ss_pred hhccchHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHH-----HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhh
Q 041344 144 TLRVKDEELQNLARDLRARDSTIRDIADKLSETAEAA-----EAAASAAHTMDEQRRIACAEIERINKESTKQLETCVLK 218 (236)
Q Consensus 144 tLrVKDeEl~~LardlraRD~tIkeiadkLseTAeAA-----EaAAsaaH~~de~r~~~~sEierL~~~~~~q~~~~~l~ 218 (236)
-++|..++|++.|.+++.=...|..+-+.|....+.- =.|+.+-+..-.+++....++..+-.++..++..+.-.
T Consensus 4 ~i~v~~~~l~~~A~~~~~~~~~l~~~l~~l~~~~~~L~~~W~G~A~~af~~~~~~w~~~~~~l~~~L~~i~~~l~~~a~~ 83 (101)
T 3fav_A 4 EMKTDAATLAQEAGNFERISGDLKTQIDQVESTAGSLQGQWRGAAGTAAQAAVVRFQEAANKQKQELDEISTNIRQAGVQ 83 (101)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999999999776666666666665443221 12445566666777777777777777777777776655
Q ss_pred hhhhh
Q 041344 219 VNFSQ 223 (236)
Q Consensus 219 lk~~~ 223 (236)
..+-+
T Consensus 84 y~~~d 88 (101)
T 3fav_A 84 YSRAD 88 (101)
T ss_dssp HC---
T ss_pred HHHHH
Confidence 54433
No 110
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=43.19 E-value=27 Score=31.72 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=29.8
Q ss_pred ceeEEeeeccc-cceeeeecChhHHHHHHHHHHHHHH
Q 041344 35 GCCFYIGTPQK-KDYFLCAETPGAARAWVSTLHAAQL 70 (236)
Q Consensus 35 gCCfyIgtpqk-K~yfLcAETp~aaraWvstl~Atql 70 (236)
.++|+|..++. +.|-|.|.|+..-..|+..|+.+..
T Consensus 471 ~~~f~i~~~~~~~~~~L~A~S~eeK~~Wi~~I~~ai~ 507 (587)
T 3ky9_A 471 SHMFLLIEDQGAQGYELFFKTRELKKKWMEQFEMAIS 507 (587)
T ss_dssp CEEEEEEETTC---CEEEESSHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEcCCCceEEEEeCCHHHHHHHHHHHHHHhh
Confidence 37899998874 6699999999999999999987764
No 111
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=39.36 E-value=2e+02 Score=25.26 Aligned_cols=20 Identities=10% Similarity=0.013 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 041344 191 DEQRRIACAEIERINKESTK 210 (236)
Q Consensus 191 de~r~~~~sEierL~~~~~~ 210 (236)
.++.+.+-.|+++++++.+.
T Consensus 536 ~~~~~~~~~~~~~le~~~~~ 555 (597)
T 3oja_B 536 QKETEDLEQENIALEKQLDN 555 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hcchhhHHhhhHHHHHHHhh
Confidence 34444444555555554443
No 112
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=39.29 E-value=53 Score=26.07 Aligned_cols=49 Identities=10% Similarity=0.138 Sum_probs=35.8
Q ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 041344 154 NLARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKES 208 (236)
Q Consensus 154 ~LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~ 208 (236)
++.+.||.-.-+++||.+-|... .......+.++++.+..+|++|++.+
T Consensus 54 ~~i~~l~~~g~~l~~i~~~~~~~------~~~~~~~l~~~~~~l~~~i~~l~~~~ 102 (278)
T 1r8e_A 54 DLIKSLKYIGTPLEEMKKAQDLE------MEELFAFYTEQERQIREKLDFLSALE 102 (278)
T ss_dssp HHHHHHHHTTCCHHHHHHHTTSC------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHhC------hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777888999999888654 12345678888888988888886544
No 113
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=38.90 E-value=41 Score=25.51 Aligned_cols=51 Identities=14% Similarity=0.162 Sum_probs=28.3
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 041344 158 DLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTKQ 211 (236)
Q Consensus 158 dlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~~q 211 (236)
+++.++.++++|++.|.-.-+ .-...+..+-++.+.+-.|+++|++++-..
T Consensus 8 ~~~~~~~~l~~~a~~Lk~~~~---~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 8 AVEEMERLLREASSILRVEPA---KLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp HHHHHHHHHHHHHHTTTCCTT---SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCChH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555566666666642110 111223335556777888888888776554
No 114
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=38.32 E-value=1.4e+02 Score=23.42 Aligned_cols=20 Identities=10% Similarity=0.205 Sum_probs=12.3
Q ss_pred HHHHHHHHHhhhhhhhHHHH
Q 041344 150 EELQNLARDLRARDSTIRDI 169 (236)
Q Consensus 150 eEl~~LardlraRD~tIkei 169 (236)
+.|.++..+.+.+-..+++.
T Consensus 101 ~~l~~~~~~~~~~rK~~~~~ 120 (276)
T 2v0o_A 101 KEVQKYGEEQVKSHKKTKEE 120 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666677776665555554
No 115
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=38.19 E-value=72 Score=22.80 Aligned_cols=56 Identities=14% Similarity=0.237 Sum_probs=36.1
Q ss_pred cchHHHHHHH--HHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 041344 147 VKDEELQNLA--RDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKES 208 (236)
Q Consensus 147 VKDeEl~~La--rdlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~ 208 (236)
..++++..|. +.+|.-.-+++||.+-|.... ......+++++..+..+|++|.+.+
T Consensus 41 Y~~~dl~~l~~I~~l~~~G~~l~~I~~~l~~~~------~~~~~~l~~~~~~l~~~i~~l~~~~ 98 (109)
T 1r8d_A 41 YSDADLERLQQILFFKEIGFRLDEIKEMLDHPN------FDRKAALQSQKEILMKKKQRMDEMI 98 (109)
T ss_dssp BCHHHHHHHHHHHHHHHTTCCHHHHHHHHHCTT------SCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHHHCCCCHHHHHHHHhCCC------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666544 456666788999988886431 1223457778888888887776544
No 116
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=34.34 E-value=1.9e+02 Score=23.71 Aligned_cols=59 Identities=12% Similarity=0.145 Sum_probs=33.1
Q ss_pred hHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 041344 149 DEELQNLARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKE 207 (236)
Q Consensus 149 DeEl~~LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~ 207 (236)
|.+|..|...++.=..-|.++-+.+.......+.+......++.+.+.+-.+|+.++..
T Consensus 17 D~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~r 75 (256)
T 3na7_A 17 DKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAK 75 (256)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555444444455555556666666666666666666666666555555554443
No 117
>3v47_C Flagellin; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Salmonella enterica subsp}
Probab=34.19 E-value=1.2e+02 Score=28.12 Aligned_cols=56 Identities=14% Similarity=0.213 Sum_probs=45.9
Q ss_pred HHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 041344 157 RDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTKQLE 213 (236)
Q Consensus 157 rdlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~~q~~ 213 (236)
.-|..-|..+.++-+-|+..-|-+..|+....+ ++.|..+-.||+.|+.++.+-..
T Consensus 32 S~lqtAEgAL~~i~~iLqRmRELaVQAaNgT~s-~~DR~aIq~Ei~qL~~eI~~Ian 87 (425)
T 3v47_C 32 SIAQTTEGALNEINNNLQRVRELSVQATNGTNS-DSDLKSIQDEIQQRLEEIDRVSN 87 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567788888999999888888888876544 78899999999999999987665
No 118
>1v61_A RAC/CDC42 guanine nucleotide exchange factor (GEF) 6; pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=33.50 E-value=42 Score=26.15 Aligned_cols=34 Identities=15% Similarity=0.341 Sum_probs=30.6
Q ss_pred ceeEEeeeccccceeeeecChhHHHHHHHHHHHH
Q 041344 35 GCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 35 gCCfyIgtpqkK~yfLcAETp~aaraWvstl~At 68 (236)
-+||-|--++.+.+.+++-|+.--..|+..|..+
T Consensus 91 ~~aFeI~g~~~~~i~v~~~s~eE~~~Wl~~L~~~ 124 (132)
T 1v61_A 91 DCMFEITGSTVERIVVHCNNNQDFQEWMEQLNRL 124 (132)
T ss_dssp CCCEEEECSSSCEEEECCCCSHHHHHHHHHHHHH
T ss_pred ccEEEEecCCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 4799999999899999999999999999998654
No 119
>2ykf_A Pdtas, probable sensor histidine kinase pdtas; transferase, two-component system, GAF domain, PAS domain; 2.00A {Mycobacterium tuberculosis} PDB: 2ykh_A
Probab=39.54 E-value=9 Score=32.16 Aligned_cols=20 Identities=40% Similarity=0.635 Sum_probs=18.3
Q ss_pred HHHHHHHHHhhhhhhhHHHH
Q 041344 150 EELQNLARDLRARDSTIRDI 169 (236)
Q Consensus 150 eEl~~LardlraRD~tIkei 169 (236)
-|++++.+.|+.+|.+||||
T Consensus 284 TE~~~lE~eL~~K~~~IrEI 303 (305)
T 2ykf_A 284 TEVKRRDRALISKDATIREI 303 (305)
Confidence 47888999999999999998
No 120
>4ehp_B Catenin alpha-1; adherens junctions, vinculin binding site, vinculin binding helix bundle, cell adhesion; 2.66A {Homo sapiens}
Probab=32.31 E-value=44 Score=26.28 Aligned_cols=49 Identities=18% Similarity=0.243 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHhhh
Q 041344 169 IADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTKQLETCVL 217 (236)
Q Consensus 169 iadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~~q~~~~~l 217 (236)
+-++|-..-+-|+.-|-++-|-|++|.-+..|-..+|++++.=+-..|-
T Consensus 34 Lee~LE~Iisgaa~~aDS~~Tr~e~RerIv~eCnavRqaLQdLlseym~ 82 (111)
T 4ehp_B 34 LEERLESIISGAALMADSSCTRDDRRERIVAECNAVRQALQDLLSEYMG 82 (111)
T ss_dssp HHHHHHHHHHHHTCSCCCCSGGGHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555556666777889999999999999999999999987766554
No 121
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=31.98 E-value=63 Score=32.07 Aligned_cols=36 Identities=17% Similarity=0.293 Sum_probs=31.1
Q ss_pred ceeEEeeeccccceeeeecChhHHHHHHHHHHHHHH
Q 041344 35 GCCFYIGTPQKKDYFLCAETPGAARAWVSTLHAAQL 70 (236)
Q Consensus 35 gCCfyIgtpqkK~yfLcAETp~aaraWvstl~Atql 70 (236)
-++|.|.....+.|.|+|.|+..-..|+..|+..|-
T Consensus 511 ~~~F~I~~~~~~~~~L~A~S~eeK~~Wi~~I~~~q~ 546 (1049)
T 3ksy_A 511 KHAFEIILKDENSVIFSAKSAEEKNNWMAALISLQY 546 (1049)
T ss_dssp CSEEEECCTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred cceEEEEcCCCCEEEEeCCCHHHHHHHHHHHHHHHH
Confidence 468999887777899999999999999999976653
No 122
>3qwm_A Iqsec1, IQ motif and SEC7 domain-containing protein 1; structural genomics, structural genomics consortium, SGC; 2.39A {Homo sapiens}
Probab=31.76 E-value=69 Score=25.63 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=30.0
Q ss_pred ccceeEEeeecc-----ccceeeeecChhHHHHHHHHHHHH
Q 041344 33 YDGCCFYIGTPQ-----KKDYFLCAETPGAARAWVSTLHAA 68 (236)
Q Consensus 33 YDgCCfyIgtpq-----kK~yfLcAETp~aaraWvstl~At 68 (236)
|--+||-|-.+. +...-|+|.|+.--..|+.+|+.+
T Consensus 80 ~~p~~~~l~s~~~G~~~k~~i~~~A~s~~ER~rwi~dL~es 120 (140)
T 3qwm_A 80 YYPNGIRLTSSVPGADIKVLINFNAPNPQDRKKFTDDLRES 120 (140)
T ss_dssp SCTTEEEEEECCTTSCCEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred CCceEEEEEecCCCCcceEEEEEECCCHHHHHHHHHHHHHH
Confidence 457889998765 345889999999999999999765
No 123
>3es4_A Uncharacterized protein DUF861 with A RMLC-like C; 17741406, protein of unknown function (DUF861) with A RMLC-L fold; HET: MSE; 1.64A {Agrobacterium tumefaciens str}
Probab=31.34 E-value=36 Score=26.10 Aligned_cols=43 Identities=12% Similarity=0.042 Sum_probs=38.0
Q ss_pred ceeEEeecCceeeeeccccCCCCCccceeEEeeeccccceeee
Q 041344 9 KGTITFDENSTIAISPVNFHGLPKYDGCCFYIGTPQKKDYFLC 51 (236)
Q Consensus 9 kG~I~fDa~STitiSPvNf~g~~kYDgCCfyIgtpqkK~yfLc 51 (236)
+++|.+|...++++.|=...-.|+--.|=+-|--+.+|-||+.
T Consensus 71 ~~~lt~ddG~~~~l~aGD~~~~P~G~~gtWev~e~vrK~~~~~ 113 (116)
T 3es4_A 71 EALYSQADADPVKIGPGSIVSIAKGVPSRLEILSSFRKLATVI 113 (116)
T ss_dssp CEEEEETTCCCEEECTTEEEEECTTCCEEEEECSCEEEEEEEE
T ss_pred EEEEEeCCCeEEEECCCCEEEECCCCeEEEEEeEEEeEEEEEe
Confidence 3566678888999999999999999999999999999999986
No 124
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=30.12 E-value=81 Score=24.40 Aligned_cols=61 Identities=11% Similarity=0.046 Sum_probs=34.7
Q ss_pred cchHHHHHH--HHHhhhhhhhHHHHHHHHHHHHHHH-HHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 041344 147 VKDEELQNL--ARDLRARDSTIRDIADKLSETAEAA-EAAASAAHTMDEQRRIACAEIERINKE 207 (236)
Q Consensus 147 VKDeEl~~L--ardlraRD~tIkeiadkLseTAeAA-EaAAsaaH~~de~r~~~~sEierL~~~ 207 (236)
..++++..| .+.+|.-.-+++||.+-|....+.. .........+.+++..+-.+|++|++.
T Consensus 49 Y~~~dl~~l~~I~~lr~~G~sl~eI~~~l~~~~~~~~~~~~~~~~ll~~~~~~l~~qi~~L~~~ 112 (154)
T 2zhg_A 49 YKRDVLRYVAIIKIAQRIGIPLATIGEAFGVLPEGHTLSAKEWKQLSSQWREELDRRIHTLVAL 112 (154)
T ss_dssp BCTTHHHHHHHHHHHHHHTCCHHHHHHHHCC-----CCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHHHCCCCHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455544 3667777889999988876422111 112223445567777777777776553
No 125
>1pgl_1 Bean POD mottle virus small (S) subunit; comovirus, viral coat protein, bean POD mottle virus (BPMV), icosahedral virus, virus/RNA complex; 2.80A {Bean-pod mottle virus} SCOP: b.121.4.2 PDB: 1pgw_1 1bmv_1
Probab=28.61 E-value=58 Score=27.80 Aligned_cols=32 Identities=16% Similarity=0.275 Sum_probs=26.4
Q ss_pred cCceeeeeccccCCCCCccceeEEeeeccccc
Q 041344 16 ENSTIAISPVNFHGLPKYDGCCFYIGTPQKKD 47 (236)
Q Consensus 16 a~STitiSPvNf~g~~kYDgCCfyIgtpqkK~ 47 (236)
=.||..++=.|=-...-|+.+=|||.+|.--+
T Consensus 87 w~s~~qv~l~~s~~~~sl~a~~w~~~~p~s~e 118 (185)
T 1pgl_1 87 WASLVQVFLTNSNSTEHFDACRWTKSEPHSWE 118 (185)
T ss_dssp CCCEEEEEEESCSSTTSCCSEEEEECCSSEEE
T ss_pred chheEEEEEEecCCcccccceeEEEecCCcee
Confidence 34677888888888999999999999997633
No 126
>2lg1_A A-kinase anchor protein 13; metal binding protein; NMR {Homo sapiens}
Probab=27.78 E-value=1.4e+02 Score=23.56 Aligned_cols=39 Identities=8% Similarity=0.161 Sum_probs=30.0
Q ss_pred cceeEEeeecc--c-cceeeeecChhHHHHHHHHHHHHHHHH
Q 041344 34 DGCCFYIGTPQ--K-KDYFLCAETPGAARAWVSTLHAAQLVL 72 (236)
Q Consensus 34 DgCCfyIgtpq--k-K~yfLcAETp~aaraWvstl~AtqlVl 72 (236)
|...||+.... . .-|=|.|.|+.--+.|+..|..|+.-.
T Consensus 133 d~~~~fli~~~~~g~~~yel~a~s~~er~~W~~~I~~Ai~~~ 174 (185)
T 2lg1_A 133 EEKGLFLISMGMTDPEMVEVHASSKEERNSWIQIIQDTINTL 174 (185)
T ss_dssp CSSEEEEECCSSSCCCCEEEECSSHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEecCCCCeEEEEEcCCHHHHHHHHHHHHHHHHhC
Confidence 55678877633 2 348899999999999999998877544
No 127
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=26.65 E-value=1.2e+02 Score=27.10 Aligned_cols=33 Identities=21% Similarity=0.273 Sum_probs=25.2
Q ss_pred ccchHHHHHHHHHhhhhhhhHHHHHHHHHHHHH
Q 041344 146 RVKDEELQNLARDLRARDSTIRDIADKLSETAE 178 (236)
Q Consensus 146 rVKDeEl~~LardlraRD~tIkeiadkLseTAe 178 (236)
.-.++|+.+|-+.+..++..|+++...+.+..+
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~ 38 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNE 38 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888888888888887777644
No 128
>3pwx_A Putative flagellar HOOK-associated protein; structural genomics, structural protein, PSI-2, protein STRU initiative; 2.50A {Vibrio parahaemolyticus}
Probab=26.37 E-value=1.2e+02 Score=25.02 Aligned_cols=55 Identities=13% Similarity=0.248 Sum_probs=44.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 041344 159 LRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTKQLET 214 (236)
Q Consensus 159 lraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~~q~~~ 214 (236)
|..-|..+.++.+-|+..-|-+..|+....+ ++.|..+-.||+.|+.++..-...
T Consensus 37 l~~ae~aL~~i~~~l~r~rel~vqa~ngt~s-~~dr~ai~~E~~~l~~~i~~iaNt 91 (239)
T 3pwx_A 37 LSSQETHLDSVSESLKSMRDIVLWGANGSLT-DQDRSGMITELKSYRDSIESSFNA 91 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCSSCC-TTTHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4556778889999999998888888876654 678999999999999998765543
No 129
>1p3r_A Disabled homolog 2; PTB, signaling protein; 2.10A {Mus musculus} SCOP: b.55.1.2 PDB: 1m7e_A
Probab=26.28 E-value=99 Score=23.96 Aligned_cols=77 Identities=19% Similarity=0.274 Sum_probs=43.9
Q ss_pred CcceeEEeecCceeee-----eccccCCCCCccceeE-EeeeccccceeeeecChhHHHHHHHHH-HHHHHHHH-HHHHH
Q 041344 7 TVKGTITFDENSTIAI-----SPVNFHGLPKYDGCCF-YIGTPQKKDYFLCAETPGAARAWVSTL-HAAQLVLK-AHKEA 78 (236)
Q Consensus 7 ~~kG~I~fDa~STiti-----SPvNf~g~~kYDgCCf-yIgtpqkK~yfLcAETp~aaraWvstl-~AtqlVlk-AHKEA 78 (236)
+++|.-+.|..+-..+ .-+.|-..-.-|..+| ||.--...-+|+|.++.+.|..-+.+| .|=++..+ .++|-
T Consensus 67 S~~GI~v~d~~tk~~~~~~~l~~ISfca~d~~d~r~FafI~k~~~~h~c~vf~s~~~A~~I~~tigqAF~~ay~~~~~~~ 146 (160)
T 1p3r_A 67 SLSGIKIIDEKTGVIEHEHPVNKISFIARDVTDNRAFGYVCGGEGQHQFFAIKTGQQAEPLVVDLKDLFQVIYNVKKKEE 146 (160)
T ss_dssp ETTEEEEEETTTCCEEEEECGGGEEEEEECTTCTTEEEEEESSTTCEEEEEEEESSCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ECCeEEEEECCCCeEEEecccCeEEEEecCCCCCcEEEEEEecCCEEEEEEEccHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4567777777665443 2333444434444555 554444455888989888899999999 45454433 33444
Q ss_pred hhhcC
Q 041344 79 VNSLS 83 (236)
Q Consensus 79 vnsls 83 (236)
.+..+
T Consensus 147 ~~~~~ 151 (160)
T 1p3r_A 147 DKKKV 151 (160)
T ss_dssp CC---
T ss_pred Hhhhh
Confidence 44433
No 130
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=25.26 E-value=85 Score=24.55 Aligned_cols=18 Identities=22% Similarity=0.174 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 041344 192 EQRRIACAEIERINKEST 209 (236)
Q Consensus 192 e~r~~~~sEierL~~~~~ 209 (236)
.+.+.-|.|++++++...
T Consensus 51 Re~~eK~re~e~~Kr~~~ 68 (103)
T 4h22_A 51 RQYEEKNKEFEREKHAHS 68 (103)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445556666776666544
No 131
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=24.61 E-value=2.8e+02 Score=22.45 Aligned_cols=30 Identities=27% Similarity=0.441 Sum_probs=22.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhhhHH
Q 041344 163 DSTIRDIADKLSETAEAAEAAASAAHTMDE 192 (236)
Q Consensus 163 D~tIkeiadkLseTAeAAEaAAsaaH~~de 192 (236)
...||.+-++|-|.-.-||.|...+..+-+
T Consensus 76 EeqIk~L~~kLKEAE~RAE~AERsv~kLEk 105 (155)
T 2efr_A 76 EEEIKVLSDKLKEAETRAEFAERSVTKLEK 105 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347999999999988788888777654433
No 132
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=24.60 E-value=3.9e+02 Score=26.75 Aligned_cols=42 Identities=21% Similarity=0.383 Sum_probs=24.0
Q ss_pred hhhccchHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 041344 143 ETLRVKDEELQNLARDLRARDSTIRDIADKLSETAEAAEAAA 184 (236)
Q Consensus 143 EtLrVKDeEl~~LardlraRD~tIkeiadkLseTAeAAEaAA 184 (236)
+.++-..+||..|-..|..-...++|+-.++.+.-+..+.+.
T Consensus 857 ~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~ 898 (1184)
T 1i84_S 857 EEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQ 898 (1184)
T ss_dssp HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566666666666555566666666665544444443
No 133
>1ny7_1 Cowpea mosaic virus, small (S) subunit; comovirus, viral coat protein, cowpea mosaic virus (CPMV), icosahedral virus; 3.00A {Cowpea mosaic virus} SCOP: b.121.4.2 PDB: 2bfu_S
Probab=24.53 E-value=65 Score=27.62 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=27.3
Q ss_pred ecCceeeeeccccCCCCCccceeEEeeeccccc
Q 041344 15 DENSTIAISPVNFHGLPKYDGCCFYIGTPQKKD 47 (236)
Q Consensus 15 Da~STitiSPvNf~g~~kYDgCCfyIgtpqkK~ 47 (236)
|=.|+..++=.|=-...-|+.+=|||.+|.--+
T Consensus 85 dw~s~~q~~l~~S~~~~sl~a~~w~i~~P~s~e 117 (189)
T 1ny7_1 85 DWDGQVFVYLRQSMNPESYDARTFVISQPGSAM 117 (189)
T ss_dssp GCCCCEEEEEESCCSTTSCEEEEEEECCSSCEE
T ss_pred cchheEEEEEEecCCcccccceeEEEecCCcee
Confidence 445788888888889999999999999997633
No 134
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=24.34 E-value=2e+02 Score=20.69 Aligned_cols=41 Identities=7% Similarity=0.257 Sum_probs=29.1
Q ss_pred CCcHHHHHhhhccchHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 041344 135 MDDLSIMKETLRVKDEELQNLARDLRARDSTIRDIADKLSE 175 (236)
Q Consensus 135 ~Ddl~imkEtLrVKDeEl~~LardlraRD~tIkeiadkLse 175 (236)
|=..+..-|.++-+++|+..|-..+-.-....+|+-++...
T Consensus 6 LL~~~~~eeEm~~~eeel~~lke~l~k~e~~rkele~~~~~ 46 (89)
T 3bas_A 6 LLSIARQEEEMKEQLKQMDKMKEDLAKTERIKKELEEQNVT 46 (89)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455667888889999999988887777777777766544
No 135
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=24.09 E-value=1.5e+02 Score=23.89 Aligned_cols=55 Identities=16% Similarity=0.147 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhhhhhhhcc
Q 041344 167 RDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTKQLETCVLKVNFSQLFCGL 228 (236)
Q Consensus 167 keiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~~q~~~~~l~lk~~~~~~~~ 228 (236)
.|+.++|.|.-.. .--|.+.|..=+.+-|+++++-+++++..-+.+++...+.|+
T Consensus 8 ee~~e~L~~~e~l-------~~el~~tWeeKl~~te~~~~e~~~~l~~~gi~~~~~~~~~gv 62 (184)
T 4egx_A 8 EEAIERLKETEKI-------IAELNETWEEKLRRTEAIRMEREALLAEMGVAMREDGGTLGV 62 (184)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEETTTEEEEE
T ss_pred HHHHHHHHHHHHH-------HHHHHhHHHHHHHHHHHHHHHHHHHHHHcCcchhhcccccce
Confidence 3555666554322 122555666666777888888888888877777776555554
No 136
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=23.24 E-value=1.8e+02 Score=19.83 Aligned_cols=53 Identities=15% Similarity=0.189 Sum_probs=30.5
Q ss_pred HHHHhhhhhhhHHHHHHHHHHHHHHHH-HHHhhhhhhHHHHHHHHHHHHHHHHH
Q 041344 155 LARDLRARDSTIRDIADKLSETAEAAE-AAASAAHTMDEQRRIACAEIERINKE 207 (236)
Q Consensus 155 LardlraRD~tIkeiadkLseTAeAAE-aAAsaaH~~de~r~~~~sEierL~~~ 207 (236)
+-+-+|.=.-+++||.+-|.-..+... ........+.+++..+-.+|++|.+.
T Consensus 8 ~I~~lr~lGfsL~eIk~~l~~~~~~~~~~~~~~~~~L~~~~~~l~~~i~~L~~~ 61 (99)
T 1q08_A 8 FIRHARQLGFSLESIRELLSIRIDPEHHTCQESKGIVQERLQEVEARIAELQSM 61 (99)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHCGGGCBHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556677777777653211111 22234456777888888887777543
No 137
>1h8b_B Titin, ZR7; structural protein, Z-DISK structural complex; NMR {Oryctolagus cuniculus}
Probab=23.03 E-value=25 Score=24.96 Aligned_cols=13 Identities=62% Similarity=0.549 Sum_probs=10.3
Q ss_pred ccchhHHHHHHhh
Q 041344 88 AKLGTVATVVAAA 100 (236)
Q Consensus 88 akLGtVAtvVAaA 100 (236)
-|-++||||||+-
T Consensus 10 kka~avatVVAav 22 (53)
T 1h8b_B 10 KKAEAVATVVAAV 22 (53)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccccceeEEEecC
Confidence 3567999999974
No 138
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=22.61 E-value=2.6e+02 Score=21.32 Aligned_cols=68 Identities=13% Similarity=0.168 Sum_probs=49.6
Q ss_pred cchHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhHhhhhhh
Q 041344 147 VKDEELQNLARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTKQLETCVLKVN 220 (236)
Q Consensus 147 VKDeEl~~LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~~q~~~~~l~lk 220 (236)
+..||++.+|+.|+.=.-++++=..+|.-.=+. -+ +-=|.+|+..-.+++.|.+.+.+-.+.+--.+.
T Consensus 6 ~dpeElr~Fa~~L~~F~d~Lq~~~~~L~~~f~~----L~--sWqDqkr~kFee~fe~l~s~l~~f~e~a~e~vp 73 (94)
T 3fx7_A 6 MDTEEVREFVGHLERFKELLREEVNSLSNHFHN----LE--SWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIA 73 (94)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CC--SCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----cc--hHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhH
Confidence 567999999999987766666666666533222 12 688999999999999999888877766544433
No 139
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=22.00 E-value=41 Score=20.58 Aligned_cols=20 Identities=30% Similarity=0.461 Sum_probs=14.7
Q ss_pred HHHHhhhhhhhHHHHHHHHH
Q 041344 155 LARDLRARDSTIRDIADKLS 174 (236)
Q Consensus 155 LardlraRD~tIkeiadkLs 174 (236)
....+.....+++|||+.|-
T Consensus 23 ~i~~l~~~g~s~~eIA~~lg 42 (55)
T 2x48_A 23 VAHELAKMGYTVQQIANALG 42 (55)
T ss_dssp HHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHC
Confidence 33445677889999999874
No 140
>1io1_A Phase 1 flagellin; beta-folium, structural protein; 2.00A {Salmonella typhimurium} SCOP: e.32.1.1
Probab=21.99 E-value=2.5e+02 Score=25.04 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=44.9
Q ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 041344 158 DLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTKQLE 213 (236)
Q Consensus 158 dlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~~q~~ 213 (236)
-|..-|..+.++-+-|+..-|-+..|+....+ ++.|..+-.||+.|+.++.+-..
T Consensus 21 ~lqtae~aL~~i~~~Lqr~relavqaangt~s-~~dr~ai~~Ei~~l~~ei~~ia~ 75 (398)
T 1io1_A 21 IAQTTEGALNEINNNLQRVRELAVQSANSTNS-QSDLDSIQAEITQRLNEIDRVSG 75 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566778889999999999999988876654 57899999999999999986544
No 141
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=21.66 E-value=56 Score=25.14 Aligned_cols=51 Identities=22% Similarity=0.256 Sum_probs=38.0
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 041344 150 EELQNLARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKES 208 (236)
Q Consensus 150 eEl~~LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~ 208 (236)
.+...|..--+=|..+|+||.+|+++.-.+.- -|-+=|.+-.||.+|-++-
T Consensus 18 ~~v~~l~~AekWR~qvikEIs~Kv~~Iqn~~L--------~E~~IRdLNDEINkL~rEK 68 (92)
T 1x4t_A 18 SECTELPKAEKWRRQIIGEISKKVAQIQNAGL--------GEFRIRDLNDEINKLLREK 68 (92)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHHHHHHHCCS--------CHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHHHHHHHhhCCCC--------CHHHHHHHHHHHHHHHHHH
Confidence 34445666667799999999999999877532 4556678888998886653
No 142
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=21.44 E-value=3.1e+02 Score=21.79 Aligned_cols=58 Identities=10% Similarity=0.174 Sum_probs=33.7
Q ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 041344 150 EELQNLARDLRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTK 210 (236)
Q Consensus 150 eEl~~LardlraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~~ 210 (236)
++|.++..+.+..-..+++...++...-.... ..+...-+.+...|.|.|+++...++
T Consensus 98 ~~l~~~~~~~~~~rK~~~~~~~k~~k~~~~~~---~~l~KaKk~Y~~~~~e~e~a~~~~~~ 155 (301)
T 2efk_A 98 LELTKYSQEMKQERKMHFQEGRRAQQQLENGF---KQLENSKRKFERDCREAEKAAQTAER 155 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45677777777666667666666654433322 22222334556677788777766544
No 143
>4g2k_A General control protein GCN4, envelope glycoprote chimera; GP2-GCN4 fusion, viral protein; 1.90A {Saccharomyces cerevisiae}
Probab=21.10 E-value=16 Score=29.72 Aligned_cols=8 Identities=25% Similarity=0.468 Sum_probs=6.2
Q ss_pred cceeEEee
Q 041344 34 DGCCFYIG 41 (236)
Q Consensus 34 DgCCfyIg 41 (236)
.-|||||-
T Consensus 99 e~CCfyin 106 (125)
T 4g2k_A 99 PDCSIGIE 106 (125)
T ss_dssp GGGGCCCC
T ss_pred ccceeecc
Confidence 35999984
No 144
>2eqe_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}
Probab=21.10 E-value=19 Score=25.21 Aligned_cols=12 Identities=50% Similarity=1.331 Sum_probs=10.0
Q ss_pred eEEeeeccccce
Q 041344 37 CFYIGTPQKKDY 48 (236)
Q Consensus 37 CfyIgtpqkK~y 48 (236)
|-|.|||+++.|
T Consensus 23 C~fFGTpen~GF 34 (48)
T 2eqe_A 23 CVYFGTPENKGF 34 (48)
T ss_dssp CCSBCCTTTTTC
T ss_pred CCcccCcccCce
Confidence 677899999875
No 145
>3pmp_A Cyclophilin A; peptidyl prolyl isomerase, isomerase-immunosuppressant compl; HET: BMT; 1.47A {Moniliophthora perniciosa} SCOP: b.62.1.1 PDB: 3o7t_A
Probab=20.34 E-value=8.1 Score=30.48 Aligned_cols=37 Identities=24% Similarity=0.358 Sum_probs=23.6
Q ss_pred CcceeEEeecCcee-eeeccccCCCCC------ccceeEEeeec
Q 041344 7 TVKGTITFDENSTI-AISPVNFHGLPK------YDGCCFYIGTP 43 (236)
Q Consensus 7 ~~kG~I~fDa~STi-tiSPvNf~g~~k------YDgCCfyIgtp 43 (236)
...|.|.|+=+... -..--||..+-+ ||||+||=..|
T Consensus 14 t~~G~i~ieL~~~~aP~t~~nF~~L~~g~~g~~Y~g~~fhRvi~ 57 (164)
T 3pmp_A 14 KPEGRIVFKLYDEAVPKTAKNFRELATGQHGFGYKDSIFHRVIP 57 (164)
T ss_dssp EEEEEEEEEECTTTCHHHHHHHHHHHHTTTSCSSTTCBEEEEET
T ss_pred EEeeEEEEEEeCCCCcHHHHHHHHHhcccCCCcccCCEEEEEEC
Confidence 45677777655442 122238876664 99999986655
No 146
>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}
Probab=20.33 E-value=1.5e+02 Score=25.12 Aligned_cols=43 Identities=21% Similarity=0.325 Sum_probs=33.7
Q ss_pred ccCCCCCccceeEEeeeccccc-eeeeecChhHHHHHHHHHHHHH
Q 041344 26 NFHGLPKYDGCCFYIGTPQKKD-YFLCAETPGAARAWVSTLHAAQ 69 (236)
Q Consensus 26 Nf~g~~kYDgCCfyIgtpqkK~-yfLcAETp~aaraWvstl~Atq 69 (236)
+..|--+ ...||=|-.|-.+. .+|++.+...|..|..-||++.
T Consensus 218 ~~~~~d~-~~~~fev~s~dG~~t~~l~~~d~~~a~~W~~ai~~~i 261 (263)
T 1z87_A 218 RCTPTDP-EPRYLEICAADGQDAVFLRAKDEASARSWAGAIQAQI 261 (263)
T ss_dssp ECCSSCS-SSCEEEEEETTTTEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred eccccCC-CCceEEEECCCCCeeEEEEECCHHHHHHHHHHHHHHh
Confidence 3344333 67899998886554 8999999999999999998763
No 147
>2d4x_A Flagellar HOOK-associated protein 3; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 1.90A {Salmonella typhimurium}
Probab=20.20 E-value=2.9e+02 Score=22.07 Aligned_cols=55 Identities=11% Similarity=0.241 Sum_probs=43.8
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhH
Q 041344 159 LRARDSTIRDIADKLSETAEAAEAAASAAHTMDEQRRIACAEIERINKESTKQLET 214 (236)
Q Consensus 159 lraRD~tIkeiadkLseTAeAAEaAAsaaH~~de~r~~~~sEierL~~~~~~q~~~ 214 (236)
|..-+..+.++.+-|+..-|-+..|+....+ ++.|..+-.|++.|+.++..-...
T Consensus 35 l~~ae~aL~~i~~~l~r~rel~vqa~ngt~s-~~dr~~i~~e~~~l~~~i~~~an~ 89 (248)
T 2d4x_A 35 VSLEESVLSQVTTAIQTAQEKIVYAGNGTLS-DDDRASLATDLQGIRDQLMNLANS 89 (248)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCTTCC-HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4456777888889898888888887775553 678999999999999998876654
Done!