BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041347
(189 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P43935|Y077_HAEIN Uncharacterized protein HI_0077 OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=HI_0077 PE=4 SV=1
Length = 288
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 68/177 (38%), Gaps = 42/177 (23%)
Query: 9 PYNPALDLPVSCRPARLGNGLQNRQAIVHSLAHTESWAIDLSWDIIARFGK--QKAMPR- 65
P P L P P R + A +H++AH E AI+L D RFG+ Q+ +
Sbjct: 60 PEKPLLVAPKDV-PKRSFATEEGYAATLHAIAHIEFNAINLGLDAAWRFGRNAQEELGEG 118
Query: 66 -EFFMDFVKVAQDKGRHFTLLAAQLEEL-------------------------------- 92
F D+++VA+++ HF+L+ L+ L
Sbjct: 119 LAFVKDWLRVAREESTHFSLVNEHLKTLGYQYGDFEAHAGLWEMAQATAHDIWERMALVP 178
Query: 93 ----ARGLNVLPTAISRFRNGGDNETAELLERVVYREEITHCAARVRWFRYLCLRSG 145
ARGL+ P + D +L+ ++ R+EI H W+ L + G
Sbjct: 179 RVLEARGLDATPVLQEKIAQRKDFAAVNILD-IILRDEIGHVYIGNHWYHALSKKRG 234
>sp|B0T1S7|FMT_CAUSK Methionyl-tRNA formyltransferase OS=Caulobacter sp. (strain K31)
GN=fmt PE=3 SV=1
Length = 312
Score = 34.3 bits (77), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 93 ARGLNVLPTAISRFRNGGDNETAELLERVVYREEITHCAARVRWFR 138
A G +LP A++ GG ET + E V Y ++I AR+ W R
Sbjct: 170 AVGSRMLPVALAAIERGGARETPQSEEGVTYAKKIKAAEARIDWTR 215
>sp|A9C3D4|SYT_DELAS Threonine--tRNA ligase OS=Delftia acidovorans (strain DSM 14801 /
SPH-1) GN=thrS PE=3 SV=1
Length = 643
Score = 33.9 bits (76), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 21/126 (16%)
Query: 15 DLPVSCRPARLGNGLQNRQAIVHSLAHTESWAI-DLSWDIIARFGKQKAMPREFFMDFVK 73
D+P+S A+ +GL I HS AH ++A+ DL D G + F+ DF
Sbjct: 58 DMPLSIVTAKDADGLD---VIRHSTAHLLAYAVKDLFPDAQVTIGP--VIENGFYYDFSY 112
Query: 74 ---------VAQDKGRHFTLLAAQLEELARGLNVLP--TAISRFRNGGDNETAELLERVV 122
VA +K LAA+ E + R VLP A++ F+ G+N AE++ +
Sbjct: 113 KRPFTPEDLVAIEK--RMAELAAKDEPVVR--RVLPRDEAVAYFKGIGENYKAEIIASIP 168
Query: 123 YREEIT 128
E+++
Sbjct: 169 SNEDVS 174
>sp|Q8AVL0|C19L1_XENLA CWF19-like protein 1 OS=Xenopus laevis GN=cwf19l1 PE=2 SV=1
Length = 540
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 19 SCRPARLGNGLQNRQAIVHSLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDK 78
+C A GL + ++ + H +S +DLS D++ + KA R FF + K
Sbjct: 350 NCYVALAKGGLMSDHVLILPIGHYQS-TVDLSSDVVKEVEQYKAALRTFF-------KTK 401
Query: 79 GRHFTLLAAQLEELARGLNVLPTAIS 104
G+ + + + L V+P +S
Sbjct: 402 GKRYVMFERNYKSQHLQLQVVPLPLS 427
>sp|B2J5J5|SYH_NOSP7 Histidine--tRNA ligase OS=Nostoc punctiforme (strain ATCC 29133 /
PCC 73102) GN=hisS PE=3 SV=1
Length = 470
Score = 31.6 bits (70), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 6/52 (11%)
Query: 68 FMDFVKV------AQDKGRHFTLLAAQLEELARGLNVLPTAISRFRNGGDNE 113
+DF+K+ DK +H TL + E+L+ G++ L T I+ RN G E
Sbjct: 244 IIDFIKIDGSVDEVLDKLKHLTLNLPETEQLSLGISELETVIAGVRNLGVTE 295
>sp|B6EIN2|SYL_ALISL Leucine--tRNA ligase OS=Aliivibrio salmonicida (strain LFI1238)
GN=leuS PE=3 SV=1
Length = 858
Score = 30.4 bits (67), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 52 DIIARFGKQKAMPREFFMDFVKVAQDKGRH--FTLLAAQLEELARGLNVLPTAISRFR 107
D+ A G QKA+ R+ KV+ D GR F A + EL LN P ++ R
Sbjct: 689 DVAALSGDQKALRRDVHKTIAKVSDDIGRRQTFNTAIAAIMELMNKLNKAPQGSAQDR 746
>sp|Q83034|POLG_RTSVA Genome polyprotein OS=Rice tungro spherical virus (strain A) PE=1
SV=1
Length = 3473
Score = 30.4 bits (67), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 7/94 (7%)
Query: 90 EELARGLNVLPTAISRFRNGGDNETAELLERVVYREEITHCAARVRWFRYLC-------L 142
+ + RG+ + A R NG D + + ++TH RV C
Sbjct: 267 QHVTRGVGMGHLAFCRDANGVDRGEHKFYLHGPFDLKMTHAMFRVFMILLNCHGYVQSEF 326
Query: 143 RSGYPTLLQDSLAPLESEAGENGCTTEENEEFIQ 176
R +P + SL L S AG G NEEFI
Sbjct: 327 RDEFPDIKDRSLCGLLSVAGLRGVNVSCNEEFIH 360
>sp|O35156|UGPA_CRIGR UTP--glucose-1-phosphate uridylyltransferase OS=Cricetulus griseus
GN=UGP2 PE=2 SV=3
Length = 508
Score = 30.4 bits (67), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 12/87 (13%)
Query: 84 LLAAQLEELARGLNV-LPTAISRFRNGGDNETAELLERVVYREEITHCAARVRWFRYLCL 142
L Q+E L + N +P + N D +T ++L++ HC ++ F
Sbjct: 141 LTVQQIEHLNKSYNTDVPLVLMNSFNT-DEDTKKILQKY------NHCRVKIYTFN---- 189
Query: 143 RSGYPTLLQDSLAPLESEAGENGCTTE 169
+S YP + ++SL P+ + +G +TE
Sbjct: 190 QSRYPRINKESLLPVAKDVSSSGESTE 216
>sp|Q6LN98|SYL_PHOPR Leucine--tRNA ligase OS=Photobacterium profundum GN=leuS PE=3 SV=1
Length = 858
Score = 30.0 bits (66), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 52 DIIARFGKQKAMPREFFMDFVKVAQDKGRH--FTLLAAQLEELARGLNVLPTAISRFR 107
D+ A G QKA+ R+ KV+ D GR F A + EL LN P ++ R
Sbjct: 689 DVAALSGNQKALRRDVHKTIAKVSDDIGRRQTFNTAIAAIMELMNKLNKAPQESAQDR 746
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,365,154
Number of Sequences: 539616
Number of extensions: 2909511
Number of successful extensions: 5774
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 5770
Number of HSP's gapped (non-prelim): 17
length of query: 189
length of database: 191,569,459
effective HSP length: 111
effective length of query: 78
effective length of database: 131,672,083
effective search space: 10270422474
effective search space used: 10270422474
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)