Query 041347
Match_columns 189
No_of_seqs 133 out of 344
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 06:13:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041347.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041347hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04305 DUF455: Protein of un 100.0 1.4E-57 2.9E-62 394.6 19.0 133 28-189 63-231 (253)
2 COG2833 Uncharacterized protei 100.0 1.5E-56 3.3E-61 387.0 16.4 131 28-188 72-238 (268)
3 cd00657 Ferritin_like Ferritin 98.5 1.5E-06 3.3E-11 61.0 9.6 94 35-137 2-130 (130)
4 cd01055 Nonheme_Ferritin nonhe 97.1 0.012 2.6E-07 46.1 11.3 103 33-142 5-137 (156)
5 PF11583 AurF: P-aminobenzoate 97.1 0.021 4.5E-07 49.7 13.5 112 34-146 81-233 (304)
6 cd07908 Mn_catalase_like Manga 96.6 0.046 1E-06 43.1 11.2 96 32-131 14-148 (154)
7 cd01045 Ferritin_like_AB Uncha 96.3 0.06 1.3E-06 39.6 9.5 47 41-92 8-54 (139)
8 PF02915 Rubrerythrin: Rubrery 96.1 0.061 1.3E-06 39.7 8.7 89 39-131 6-131 (137)
9 PRK10635 bacterioferritin; Pro 95.9 0.14 3E-06 41.9 10.7 100 33-138 8-139 (158)
10 cd00907 Bacterioferritin Bacte 95.9 0.26 5.7E-06 38.1 11.6 104 33-139 7-139 (153)
11 cd01041 Rubrerythrin Rubreryth 95.4 0.12 2.5E-06 40.1 8.0 91 38-131 8-124 (134)
12 PF05138 PaaA_PaaC: Phenylacet 95.2 0.077 1.7E-06 46.7 7.4 71 71-142 52-161 (263)
13 PF00210 Ferritin: Ferritin-li 95.2 0.64 1.4E-05 34.4 11.2 106 34-142 2-141 (142)
14 cd01051 Mn_catalase Manganese 95.1 0.68 1.5E-05 37.8 12.0 99 34-137 24-152 (156)
15 cd01042 DMQH Demethoxyubiquino 95.0 0.21 4.5E-06 41.6 9.0 85 43-133 12-134 (165)
16 TIGR02158 PA_CoA_Oxy3 phenylac 94.7 0.14 3.1E-06 44.8 7.5 72 71-143 28-136 (237)
17 TIGR02156 PA_CoA_Oxy1 phenylac 94.7 0.13 2.9E-06 46.3 7.5 71 71-142 59-165 (289)
18 PRK13778 paaA phenylacetate-Co 94.7 0.14 3E-06 46.8 7.6 71 71-142 77-183 (314)
19 TIGR00754 bfr bacterioferritin 94.3 1.5 3.2E-05 34.8 12.0 103 32-138 7-139 (157)
20 PRK13456 DNA protection protei 94.1 0.66 1.4E-05 39.7 10.1 101 33-141 22-162 (186)
21 PRK10304 ferritin; Provisional 93.0 1.9 4E-05 35.4 10.8 106 32-140 6-144 (165)
22 cd01052 DPSL DPS-like protein, 92.4 3.9 8.4E-05 31.4 11.2 97 32-131 7-142 (148)
23 COG2406 Protein distantly rela 92.2 1.9 4.1E-05 36.4 9.8 108 29-144 15-162 (172)
24 cd01044 Ferritin_CCC1_N Ferrit 90.6 5.2 0.00011 30.6 10.2 52 36-92 3-54 (125)
25 cd01046 Rubrerythrin_like rubr 89.5 6.6 0.00014 30.3 10.0 93 35-132 5-114 (123)
26 COG3396 Uncharacterized conser 88.3 2 4.3E-05 38.7 7.2 71 71-142 54-161 (265)
27 PF03232 COQ7: Ubiquinone bios 88.0 4.6 9.9E-05 33.8 8.7 69 64-133 31-140 (172)
28 PF13668 Ferritin_2: Ferritin- 87.8 5.8 0.00013 30.4 8.7 96 35-131 5-129 (137)
29 cd07911 RNRR2_Rv0233_like Ribo 87.1 4 8.6E-05 35.6 8.2 111 26-144 38-208 (280)
30 COG2193 Bfr Bacterioferritin ( 86.5 7.5 0.00016 32.7 9.1 98 31-131 6-132 (157)
31 COG1633 Uncharacterized conser 85.5 15 0.00033 30.7 10.6 95 41-141 34-170 (176)
32 cd07910 MiaE MiaE tRNA-modifyi 84.6 4.3 9.3E-05 34.7 7.0 74 28-107 15-92 (180)
33 PF02332 Phenol_Hydrox: Methan 83.7 27 0.00058 29.9 11.6 105 33-143 76-230 (233)
34 cd01050 Acyl_ACP_Desat Acyl AC 82.3 18 0.00038 32.9 10.3 90 68-184 95-223 (297)
35 cd01056 Euk_Ferritin eukaryoti 80.8 27 0.00058 27.9 11.7 108 33-142 5-145 (161)
36 cd01057 AAMH_A Aromatic and Al 77.4 50 0.0011 31.7 12.2 101 35-141 82-231 (465)
37 PF00268 Ribonuc_red_sm: Ribon 72.5 21 0.00045 30.9 7.7 110 28-143 49-211 (281)
38 cd01043 DPS DPS protein, ferri 72.2 10 0.00022 29.1 5.2 59 71-130 36-132 (139)
39 cd01045 Ferritin_like_AB Uncha 69.7 39 0.00084 24.5 7.6 55 29-88 84-138 (139)
40 PF12902 Ferritin-like: Ferrit 66.2 34 0.00075 29.6 7.7 54 37-92 2-55 (227)
41 cd01058 AAMH_B Aromatic and Al 65.7 1E+02 0.0022 27.7 11.6 103 35-143 104-257 (304)
42 PRK08326 ribonucleotide-diphos 65.5 12 0.00026 33.5 4.9 111 27-143 56-226 (311)
43 cd01048 Ferritin_like_AB2 Unch 58.8 50 0.0011 25.9 6.8 45 40-92 9-53 (135)
44 COG4445 MiaE Hydroxylase for s 56.7 55 0.0012 28.4 7.1 60 35-100 32-91 (203)
45 cd01049 RNRR2 Ribonucleotide R 52.4 56 0.0012 28.1 6.6 38 106-144 170-208 (288)
46 PF13668 Ferritin_2: Ferritin- 52.1 1E+02 0.0022 23.4 8.4 58 29-91 80-137 (137)
47 COG1084 Predicted GTPase [Gene 51.8 85 0.0018 29.5 8.0 85 29-116 41-127 (346)
48 cd07908 Mn_catalase_like Manga 51.7 1E+02 0.0023 24.0 7.6 54 31-89 101-154 (154)
49 PRK09614 nrdF ribonucleotide-d 51.1 45 0.00098 29.6 6.0 113 27-143 51-215 (324)
50 cd01050 Acyl_ACP_Desat Acyl AC 51.0 32 0.00069 31.3 5.1 21 72-92 185-205 (297)
51 PHA02891 hypothetical protein; 48.8 18 0.00039 28.8 2.8 28 88-115 6-33 (120)
52 PRK12775 putative trifunctiona 48.8 55 0.0012 34.1 7.0 48 41-92 951-998 (1006)
53 PF11266 DUF3066: Protein of u 48.5 1.9E+02 0.0042 25.5 9.6 71 65-140 37-148 (219)
54 cd01044 Ferritin_CCC1_N Ferrit 48.4 81 0.0018 24.0 6.3 23 68-90 102-124 (125)
55 PF13794 MiaE_2: tRNA-(MS[2]IO 48.1 1.4E+02 0.003 25.7 8.2 103 31-143 6-145 (185)
56 PRK07209 ribonucleotide-diphos 47.4 76 0.0016 29.2 7.0 109 27-142 91-264 (369)
57 PRK14983 aldehyde decarbonylas 46.0 1.6E+02 0.0035 26.1 8.4 71 65-140 47-158 (231)
58 cd01041 Rubrerythrin Rubreryth 45.5 1.1E+02 0.0024 23.5 6.7 60 30-92 73-133 (134)
59 cd00904 Ferritin Ferritin iron 43.7 1.7E+02 0.0036 23.4 10.5 105 33-145 5-113 (160)
60 COG2941 CAT5 Ubiquinone biosyn 43.6 42 0.0009 29.4 4.4 23 70-92 75-97 (204)
61 smart00674 CENPB Putative DNA- 41.8 1E+02 0.0023 20.5 5.5 44 93-147 20-63 (66)
62 PLN00179 acyl- [acyl-carrier p 41.3 99 0.0022 29.5 6.8 83 75-184 165-286 (390)
63 COG1592 Rubrerythrin [Energy p 41.1 85 0.0018 26.4 5.8 86 43-131 16-120 (166)
64 PRK01076 L-rhamnose isomerase; 36.2 1.3E+02 0.0029 28.9 6.9 52 91-148 348-399 (419)
65 PRK12759 bifunctional gluaredo 34.4 1E+02 0.0023 28.6 5.9 30 113-143 270-299 (410)
66 PF06175 MiaE: tRNA-(MS[2]IO[6 34.3 2.8E+02 0.006 24.9 8.2 69 29-99 25-132 (240)
67 TIGR01748 rhaA L-rhamnose isom 33.9 1.6E+02 0.0034 28.4 7.0 50 93-148 346-395 (414)
68 PF03405 FA_desaturase_2: Fatt 33.0 71 0.0015 29.6 4.5 64 68-132 100-203 (330)
69 PRK13965 ribonucleotide-diphos 32.4 1.1E+02 0.0024 27.8 5.6 35 107-142 189-224 (335)
70 COG2733 Predicted membrane pro 31.4 2E+02 0.0043 27.8 7.2 40 51-92 242-281 (415)
71 PF03405 FA_desaturase_2: Fatt 30.2 59 0.0013 30.2 3.5 21 72-92 191-211 (330)
72 PF03221 HTH_Tnp_Tc5: Tc5 tran 29.5 1.1E+02 0.0025 19.9 4.0 46 93-146 17-62 (66)
73 PF13838 Clathrin_H_link: Clat 28.0 96 0.0021 22.4 3.6 20 93-112 33-52 (66)
74 PRK12775 putative trifunctiona 26.5 1.4E+02 0.003 31.3 5.7 95 41-141 870-999 (1006)
75 COG3294 HD supefamily hydrolas 26.0 1.2E+02 0.0026 27.5 4.5 35 31-71 101-141 (269)
76 PRK13967 nrdF1 ribonucleotide- 25.5 79 0.0017 28.5 3.4 108 27-140 51-210 (322)
77 TIGR02029 AcsF magnesium-proto 24.5 54 0.0012 30.7 2.1 28 72-99 111-138 (337)
78 PHA01976 helix-turn-helix prot 24.3 1.2E+02 0.0027 20.0 3.4 30 90-119 19-48 (67)
79 PF06777 DUF1227: Protein of u 24.2 62 0.0013 26.8 2.2 38 62-99 85-122 (146)
80 CHL00185 ycf59 magnesium-proto 23.7 58 0.0013 30.6 2.2 29 71-99 116-144 (351)
81 cd01047 ACSF Aerobic Cyclase S 23.7 57 0.0012 30.4 2.1 30 70-99 99-128 (323)
82 PRK13654 magnesium-protoporphy 23.6 60 0.0013 30.6 2.2 27 73-99 122-148 (355)
83 COG1011 Predicted hydrolase (H 23.3 1.5E+02 0.0032 23.6 4.3 84 62-148 81-171 (229)
84 PTZ00211 ribonucleoside-diphos 23.3 85 0.0019 28.2 3.2 29 113-142 195-223 (330)
85 smart00530 HTH_XRE Helix-turn- 23.3 1.1E+02 0.0024 17.6 2.7 31 89-119 13-43 (56)
86 PF05569 Peptidase_M56: BlaR1 23.2 74 0.0016 27.5 2.7 28 114-142 192-219 (299)
87 PLN02492 ribonucleoside-diphos 23.1 93 0.002 27.9 3.4 112 27-142 50-212 (324)
88 PRK13966 nrdF2 ribonucleotide- 22.1 2.5E+02 0.0055 25.4 5.9 26 113-139 185-210 (324)
89 PF12652 CotJB: CotJB protein; 21.5 92 0.002 23.1 2.5 20 32-51 1-20 (78)
90 PF09079 Cdc6_C: CDC6, C termi 21.4 1.2E+02 0.0026 21.5 3.0 14 137-150 25-38 (85)
91 PRK01759 glnD PII uridylyl-tra 20.4 6.5E+02 0.014 25.9 9.0 76 31-119 477-560 (854)
92 PF13699 DUF4157: Domain of un 20.2 63 0.0014 23.5 1.4 19 27-45 57-75 (79)
93 COG0208 NrdF Ribonucleotide re 20.2 1.3E+02 0.0029 27.9 3.8 29 113-142 209-237 (348)
94 PLN02508 magnesium-protoporphy 20.1 59 0.0013 30.6 1.5 27 73-99 118-144 (357)
95 PF02915 Rubrerythrin: Rubrery 20.1 3.4E+02 0.0075 19.5 7.9 53 31-88 84-136 (137)
No 1
>PF04305 DUF455: Protein of unknown function (DUF455); InterPro: IPR007402 This is a family of uncharacterised proteins.
Probab=100.00 E-value=1.4e-57 Score=394.60 Aligned_cols=133 Identities=50% Similarity=0.879 Sum_probs=128.9
Q ss_pred ChhhHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHH---------------
Q 041347 28 GLQNRQAIVHSLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEEL--------------- 92 (189)
Q Consensus 28 s~~~RaalLHaiAHIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~el--------------- 92 (189)
|.++|++|||+||||||||||||||++|||. ++||.+||.||++||.||+|||.||.+||++|
T Consensus 63 ~~~~r~~llHaiAhIE~~AIdLa~Da~~RF~--~~lP~~f~~D~~~va~dEarHf~ll~~rL~~lG~~yGd~P~h~gLw~ 140 (253)
T PF04305_consen 63 TPEGRAALLHAIAHIELNAIDLALDAIYRFH--PNLPREFYDDWLRVADDEARHFRLLRERLEELGSDYGDLPAHDGLWE 140 (253)
T ss_pred ChhhHHHHHHHhcchHHHHHHHHHHHHHHHh--ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcchhhHHHH
Confidence 8899999999999999999999999999992 38999999999999999999999999999999
Q ss_pred ---------------------HccCCCcHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHcCCCCCcc
Q 041347 93 ---------------------ARGLNVLPTAISRFRNGGDNETAELLERVVYREEITHCAARVRWFRYLCLRSGYPTLLQ 151 (189)
Q Consensus 93 ---------------------ARGLDv~P~~i~k~~~~GD~~sa~iLe~iI~~DEI~HVa~G~rWF~~lC~~~g~~p~~~ 151 (189)
|||||+||.+++||+++||.+|++||+ |||+|||+||++|+|||+|+|+++|.||
T Consensus 141 ~~~~t~~dl~~R~A~vp~~~EArGLD~~p~~~~k~~~~gD~~sa~iL~-~I~~DEi~HV~~G~rWf~~~c~~~~~~p--- 216 (253)
T PF04305_consen 141 AAEQTAHDLLARMALVPRVLEARGLDVTPFIIEKFRSAGDEESAAILE-IILRDEIGHVAIGNRWFRYLCEQRGLDP--- 216 (253)
T ss_pred HHHHhccCHHHHHHHHHHHHHhhCCCCCHHHHHHHHHCCCHHHHHHHH-HHHHHHHHHHHhhHHHHHHHHHhccccH---
Confidence 999999999999999999999999999 8999999999999999999999999988
Q ss_pred CccccccccccCCCCCcchhhHHHHHHHHHHHhhccCC
Q 041347 152 DSLAPLESEAGENGCTTEENEEFIQNFRAMVRTHFRGH 189 (189)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~lv~~~f~g~ 189 (189)
.++|+++|+.||.|.
T Consensus 217 -----------------------~~~f~~lv~~~~~~~ 231 (253)
T PF04305_consen 217 -----------------------WETFRELVRQYFRGK 231 (253)
T ss_pred -----------------------HHHHHHHHHHhCCCC
Confidence 999999999999873
No 2
>COG2833 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=100.00 E-value=1.5e-56 Score=387.02 Aligned_cols=131 Identities=38% Similarity=0.758 Sum_probs=129.2
Q ss_pred ChhhHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHH---------------
Q 041347 28 GLQNRQAIVHSLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEEL--------------- 92 (189)
Q Consensus 28 s~~~RaalLHaiAHIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~el--------------- 92 (189)
|..||+++||+||||||||||||+|++|||. ++|.+||+||++||.||++||+||++||++|
T Consensus 72 t~~g~aallHAiAHIEfNAInLaLDa~~RF~---~~p~~F~~dWm~VA~EE~~HF~Ll~~~L~~LG~~YGDfpaHdgLw~ 148 (268)
T COG2833 72 TTHGRAALLHAIAHIEFNAINLALDAVYRFA---PLPLQFYDDWMRVADEEAKHFRLLRERLKSLGYDYGDFPAHDGLWQ 148 (268)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHhc---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCcccccHHH
Confidence 9999999999999999999999999999996 8999999999999999999999999999999
Q ss_pred ---------------------HccCCCcHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHcCCCCCcc
Q 041347 93 ---------------------ARGLNVLPTAISRFRNGGDNETAELLERVVYREEITHCAARVRWFRYLCLRSGYPTLLQ 151 (189)
Q Consensus 93 ---------------------ARGLDv~P~~i~k~~~~GD~~sa~iLe~iI~~DEI~HVa~G~rWF~~lC~~~g~~p~~~ 151 (189)
|||||+||.+.+|+++.||.+++.||+ |||+||||||++|++||+++|+++|+||
T Consensus 149 ~a~~T~~dl~~RmalVprvLEARGLDatP~l~aK~~~~gD~~~~~iLd-IIlrDEigHVaiGn~Wyrflc~r~gldp--- 224 (268)
T COG2833 149 MAEATANDLLARMALVPRVLEARGLDATPSLRAKLAETGDSEAAAILD-IILRDEIGHVAIGNKWYRFLCARRGLDP--- 224 (268)
T ss_pred HHHHhhcCHHHHhhhhhhHHhhccCCCCHHHHHHHHHcCchHHHHHHH-HHHhccccceeechHHHHHHHHhcCCCh---
Confidence 999999999999999999999999999 8999999999999999999999999999
Q ss_pred CccccccccccCCCCCcchhhHHHHHHHHHHHhhccC
Q 041347 152 DSLAPLESEAGENGCTTEENEEFIQNFRAMVRTHFRG 188 (189)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~lv~~~f~g 188 (189)
..+|++||++||++
T Consensus 225 -----------------------~~~FreL~r~y~~~ 238 (268)
T COG2833 225 -----------------------AATFRELVRAYFRF 238 (268)
T ss_pred -----------------------HHHHHHHHHHhCCc
Confidence 99999999999987
No 3
>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub
Probab=98.51 E-value=1.5e-06 Score=61.02 Aligned_cols=94 Identities=26% Similarity=0.294 Sum_probs=73.8
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHH----------------------
Q 041347 35 IVHSLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEEL---------------------- 92 (189)
Q Consensus 35 lLHaiAHIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~el---------------------- 92 (189)
.|-.+...|+.|++.....+.++. ..+...-|.+.+.||.+|+.++.+++..+
T Consensus 2 ~L~~~~~~E~~a~~~y~~~~~~~~-----~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 76 (130)
T cd00657 2 LLNDALAGEYAAIIAYGQLAARAP-----DPDLKDELLEIADEERRHADALAERLRELGGTPPLPPAHLLAAYALPKTSD 76 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhcccCCCcc
Confidence 355677899999999888787773 57788899999999999999999999886
Q ss_pred -------------HccCCCcHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhHHhhhHHH
Q 041347 93 -------------ARGLNVLPTAISRFRNGGDNETAELLERVVYREEITHCAARVRWF 137 (189)
Q Consensus 93 -------------ARGLDv~P~~i~k~~~~GD~~sa~iLe~iI~~DEI~HVa~G~rWF 137 (189)
..+++.-..+.+ .+.|..+.+++. .|..||..|+..+.+|+
T Consensus 77 ~~~~~l~~~~~~E~~~~~~y~~~~~---~~~d~~~~~~~~-~~~~~E~~H~~~~~~~~ 130 (130)
T cd00657 77 DPAEALRAALEVEARAIAAYRELIE---QADDPELRRLLE-RILADEQRHAAWFRKLL 130 (130)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH---hcCChHHHHHHH-HHHHHHHHHHHHHHhhC
Confidence 222222222332 344888899999 48999999999999985
No 4
>cd01055 Nonheme_Ferritin nonheme-containing ferritins. Nonheme Ferritin domain, found in archaea and bacteria, is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The ferritin protein shell is composed of 24 protein subunits arranged in 432 symmetry. Each protein subunit, a four-helix bundle with a fifth short terminal helix, contains a dinuclear ferroxidase center (H type). Unique to this group of proteins is a third metal site in the ferroxidase center. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite.
Probab=97.10 E-value=0.012 Score=46.15 Aligned_cols=103 Identities=16% Similarity=0.147 Sum_probs=74.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHHH-----ccC--------C--
Q 041347 33 QAIVHSLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEELA-----RGL--------N-- 97 (189)
Q Consensus 33 aalLHaiAHIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~elA-----RGL--------D-- 97 (189)
..+|-...+-|+.|+...+-...-|.. .++| .|-.=|-+.|.+|..|...+.++|..++ ..+ |
T Consensus 5 ~~~Ln~~~~~El~A~~~Yl~~a~~~~~-~~~~-~~a~~f~~~a~eE~~HA~~l~~~i~~~gg~~~~~~~~~~~~~~~~~~ 82 (156)
T cd01055 5 EKALNEQINLELYSSYLYLAMAAWFDS-KGLD-GFANFFRVQAQEEREHAMKFFDYLNDRGGRVELPAIEAPPSEFESLL 82 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-cCCh-hHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeeCCCCCCCCcccCCHH
Confidence 456777888999999987755556643 3666 5555566789999999999999998761 001 1
Q ss_pred ---------------CcHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHH
Q 041347 98 ---------------VLPTAISRFRNGGDNETAELLERVVYREEITHCAARVRWFRYLCL 142 (189)
Q Consensus 98 ---------------v~P~~i~k~~~~GD~~sa~iLe~iI~~DEI~HVa~G~rWF~~lC~ 142 (189)
.-+.+++.-...||..+++.++. |+.||+.|+ +||.-+..
T Consensus 83 ~~l~~al~~E~~~~~~~~~l~~~A~~~~D~~~~~~l~~-~l~~q~e~~----~~~~~~l~ 137 (156)
T cd01055 83 EVFEAALEHEQKVTESINNLVDLALEEKDYATFNFLQW-FVKEQVEEE----ALARDILD 137 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHH-HHHHHHHHH----HHHHHHHH
Confidence 11223344456799999999995 999999999 77777776
No 5
>PF11583 AurF: P-aminobenzoate N-oxygenase AurF; PDB: 3CHI_B 3CHT_A 3CHH_A 2JCD_B 3CHU_A.
Probab=97.05 E-value=0.021 Score=49.70 Aligned_cols=112 Identities=16% Similarity=0.138 Sum_probs=74.7
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHHH--ccCCCcHH----------
Q 041347 34 AIVHSLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEELA--RGLNVLPT---------- 101 (189)
Q Consensus 34 alLHaiAHIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~elA--RGLDv~P~---------- 101 (189)
.++.-..|+|...++.+.-.+.+..-..+.+...+...++...||++|-.|..+-++.++ |||+-.|.
T Consensus 81 ~~~~~~i~~E~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~DE~rH~~mf~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 160 (304)
T PF11583_consen 81 NYLSQGIWFEQGLVNPAFRMLARDRFPSDPDDDAKRYALTEIADEARHSLMFARAINRTGRRRGLAPLPPPYPPRRLLRR 160 (304)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHTT-STTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----S--HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccCCCCCchHHHHHH
Confidence 344556688999998877777765422457788999999999999999999988887773 33332211
Q ss_pred ---------------------------HHHHHHcCCC--HHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHcCC
Q 041347 102 ---------------------------AISRFRNGGD--NETAELLERVVYREEITHCAARVRWFRYLCLRSGY 146 (189)
Q Consensus 102 ---------------------------~i~k~~~~GD--~~sa~iLe~iI~~DEI~HVa~G~rWF~~lC~~~g~ 146 (189)
+...+.+-++ .-...++. +...||..|+++|..+++..-.+.+.
T Consensus 161 l~~~~~~~~~~~~~~~~~lv~Ee~i~~~~~~~~~D~~iqP~~r~v~~-iH~~DEaRHi~f~~~~l~~~~~~l~~ 233 (304)
T PF11583_consen 161 LARLLPPWERGLLFFAFALVAEEIIDAYQREIARDETIQPLVRQVMR-IHVRDEARHIAFAREELRRVWPRLSP 233 (304)
T ss_dssp HHTS-SHHHHHHHHHHHHHHHHHSBHHHHHHHHT-SSS-HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHS-H
T ss_pred HHHhcccccchHHHHHHHHHHHHHHHHHHHHhhcCCCCChHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 1112222221 12244665 67899999999999999998877744
No 6
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=96.61 E-value=0.046 Score=43.10 Aligned_cols=96 Identities=17% Similarity=0.105 Sum_probs=64.1
Q ss_pred HHHHHHHHH---hHHHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHHHc--------------
Q 041347 32 RQAIVHSLA---HTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEELAR-------------- 94 (189)
Q Consensus 32 RaalLHaiA---HIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~elAR-------------- 94 (189)
-+.+|-..- +-|+.||...+ ..+|.. ..--.+..+=+.+.|.+|.+|..++.+++..|+-
T Consensus 14 ~~~~~~~~~~g~~~E~~ai~~Y~--y~~~~~-~~~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~~~~~~~~~~ 90 (154)
T cd07908 14 YAELLLDDYAGTNSELTAISQYI--YQHLIS-EEKYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSSSSDKFTY 90 (154)
T ss_pred HHHHHHHHhCCcchHHHHHHHHH--HHHHHc-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhccccCCc
Confidence 344554444 59999998764 233321 1223567778889999999999999999999721
Q ss_pred --------cCCCc--------------HHHHHHHHcCCCHHHHHHHHHhhhhhhhhhHH
Q 041347 95 --------GLNVL--------------PTAISRFRNGGDNETAELLERVVYREEITHCA 131 (189)
Q Consensus 95 --------GLDv~--------------P~~i~k~~~~GD~~sa~iLe~iI~~DEI~HVa 131 (189)
+-|.. ..+.+-.+..+|..+.++|+. |..||..|..
T Consensus 91 ~~~~~~~~~~~~~~~L~~~~~~E~~ai~~Y~~~~~~~~d~~~r~ll~~-I~~eE~~H~~ 148 (154)
T cd07908 91 WTGKYVNYGESIKEMLKLDIASEKAAIAKYKRQAETIKDPYIRALLNR-IILDEKLHIK 148 (154)
T ss_pred CCccccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHHHHH
Confidence 01111 111122445688888999995 8999999985
No 7
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=96.30 E-value=0.06 Score=39.61 Aligned_cols=47 Identities=21% Similarity=0.262 Sum_probs=37.6
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041347 41 HTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEEL 92 (189)
Q Consensus 41 HIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~el 92 (189)
-+|..+++.....+.++. -| ..-.=|.+.|.+|.+|..+|.+++..+
T Consensus 8 ~~E~~~~~~Y~~~a~~~~----~~-~~~~~~~~la~eE~~H~~~l~~~~~~~ 54 (139)
T cd01045 8 KMEEEAAEFYLELAEKAK----DP-ELKKLFEELAEEEKEHAERLEELYEKL 54 (139)
T ss_pred HHHHHHHHHHHHHHhHCC----CH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468888888876666663 23 566667789999999999999999987
No 8
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=96.09 E-value=0.061 Score=39.71 Aligned_cols=89 Identities=20% Similarity=0.226 Sum_probs=65.1
Q ss_pred HHhHHHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHHHcc-----------------------
Q 041347 39 LAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEELARG----------------------- 95 (189)
Q Consensus 39 iAHIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~elARG----------------------- 95 (189)
-...|..+.++.....-++.+ .+ .+.-.=|...|.||.+|..++.+.+..+.-+
T Consensus 6 A~~~E~~~~~~Y~~~a~~~~~-~~--p~~~~~f~~lA~~E~~H~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (137)
T PF02915_consen 6 AIKMELEAAKFYRELAEKAKD-EG--PELKELFRRLAEEEQEHAKFLEKLLRKLGPGEEPPFLEEKVEYSFFPKLEEETD 82 (137)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHHHHHHHHHCHCSTTHHTHCHCCCCCHCCCCTCCSSHH
T ss_pred HHHHHHHHHHHHHHHHHHhhh-cc--cHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCcchhhhhhhhhhcchhhhhhh
Confidence 346799999987766666642 12 5678888999999999999999999877111
Q ss_pred --------------CCCcHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhHH
Q 041347 96 --------------LNVLPTAISRFRNGGDNETAELLERVVYREEITHCA 131 (189)
Q Consensus 96 --------------LDv~P~~i~k~~~~GD~~sa~iLe~iI~~DEI~HVa 131 (189)
-+.-+.+..-.+..+|.+..++++. |..||-.|+.
T Consensus 83 ~~~~~~l~~a~~~E~~~~~~Y~~~a~~~~~~~~~~~~~~-l~~~E~~H~~ 131 (137)
T PF02915_consen 83 ENLEEALEMAIKEEKDAYEFYAELARKAPDPEIRKLFEE-LAKEEKEHED 131 (137)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHTTSHHHHHHHHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHH
Confidence 1112334445667788888889994 8889999985
No 9
>PRK10635 bacterioferritin; Provisional
Probab=95.91 E-value=0.14 Score=41.85 Aligned_cols=100 Identities=13% Similarity=0.024 Sum_probs=67.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCC---hhHHHhHHHHHHHHHHHHHHHHHHHHHH------------Hcc--
Q 041347 33 QAIVHSLAHTESWAIDLSWDIIARFGKQKAMP---REFFMDFVKVAQDKGRHFTLLAAQLEEL------------ARG-- 95 (189)
Q Consensus 33 aalLHaiAHIEl~AIdLA~Dai~RF~~~~~lP---~~Fy~Dwl~VA~DEarHF~LL~~rL~el------------ARG-- 95 (189)
+.+|=..-..|+.||...+-...=|. ..+++ ..||. -|.||-+|...|.+|+-.| .-|
T Consensus 8 i~~LN~~L~~El~Ai~QY~~ha~~~~-~~G~~~la~~~~~----ea~eEm~HA~~l~eRIl~LgG~P~~~~~~~~~~g~~ 82 (158)
T PRK10635 8 INYLNKLLGNELVAINQYFLHARMFK-NWGLMRLNDVEYH----ESIDEMKHADKYIERILFLEGIPNLQDLGKLNIGED 82 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHH----HHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCC
Confidence 34455555679999998874444442 22333 23333 3899999999999999999 122
Q ss_pred ------------CCCcHHHHH---HHHcCCCHHHHHHHHHhhhhhhhhhHHhhhHHHH
Q 041347 96 ------------LNVLPTAIS---RFRNGGDNETAELLERVVYREEITHCAARVRWFR 138 (189)
Q Consensus 96 ------------LDv~P~~i~---k~~~~GD~~sa~iLe~iI~~DEI~HVa~G~rWF~ 138 (189)
.++...+.+ -....||..|.++++. |+.||-.|..+=..|+.
T Consensus 83 v~eml~~dl~~E~~ai~~y~e~i~~a~~~~D~~s~~ll~~-iL~dEe~H~~~le~~l~ 139 (158)
T PRK10635 83 VEEMLRSDLRLELEGAKDLREAIAYADSVHDYVSRDMMIE-ILADEEGHIDWLETELD 139 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 222233333 2344799999999995 99999999976666665
No 10
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=95.85 E-value=0.26 Score=38.12 Aligned_cols=104 Identities=18% Similarity=0.138 Sum_probs=67.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHHH------------ccCCCcH
Q 041347 33 QAIVHSLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEELA------------RGLNVLP 100 (189)
Q Consensus 33 aalLHaiAHIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~elA------------RGLDv~P 100 (189)
+..|=..-..|+.|+....-..+-|. ..+. ..+-.=|...|.||..|+..+.+|+.+++ .|-|+..
T Consensus 7 ~~~Ln~~l~~E~~a~~~Y~~~a~~~~-~~~~-~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg~p~~~~~~~~~~~~~~~~ 84 (153)
T cd00907 7 IEALNKALTGELTAINQYFLHARMLE-DWGL-EKLAERFRKESIEEMKHADKLIERILFLEGLPNLQRLGKLRIGEDVPE 84 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-cCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCCCCCcCCCHHH
Confidence 44555566789999987665555553 1122 23444556799999999999999999981 1212211
Q ss_pred H-----------------HHHHHHcCCCHHHHHHHHHhhhhhhhhhHHhhhHHHHH
Q 041347 101 T-----------------AISRFRNGGDNETAELLERVVYREEITHCAARVRWFRY 139 (189)
Q Consensus 101 ~-----------------~i~k~~~~GD~~sa~iLe~iI~~DEI~HVa~G~rWF~~ 139 (189)
. +++.-...+|..++++|+. |..||..|..+=..|+.-
T Consensus 85 ~l~~~l~~E~~~~~~y~~~~~~A~~~~D~~t~~~l~~-~~~~e~~h~~~l~~~l~~ 139 (153)
T cd00907 85 MLENDLALEYEAIAALNEAIALCEEVGDYVSRDLLEE-ILEDEEEHIDWLETQLDL 139 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 1 1112234789999999995 899999998654444443
No 11
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=95.39 E-value=0.12 Score=40.12 Aligned_cols=91 Identities=16% Similarity=0.100 Sum_probs=61.7
Q ss_pred HHHhHHHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHHH------------------------
Q 041347 38 SLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEELA------------------------ 93 (189)
Q Consensus 38 aiAHIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~elA------------------------ 93 (189)
..-.-|++|.....-...-+ ...++ .++-.-|-..|.+|..|-.++.++|..+.
T Consensus 8 ~a~~~E~~a~~~Y~~~a~~a-~~~g~-~~~a~~f~~~a~eE~~HA~~~~~~l~~l~g~~~~~~~~~~~~~~~l~~~~~~E 85 (134)
T cd01041 8 AAFAGESQARNRYTYFAEKA-RKEGY-EQIARLFRATAENEKEHAKGHFKLLKGLGGGDTGPPIGIGDTLENLKAAIAGE 85 (134)
T ss_pred HHHHhHHHHHHHHHHHHHHH-HHCCH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCCCCCcchHHHHHHHHHHhh
Confidence 33455788887643222212 11233 34555566889999999999999997761
Q ss_pred --ccCCCcHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhHH
Q 041347 94 --RGLNVLPTAISRFRNGGDNETAELLERVVYREEITHCA 131 (189)
Q Consensus 94 --RGLDv~P~~i~k~~~~GD~~sa~iLe~iI~~DEI~HVa 131 (189)
-..+.-|.+++.-+..||..++..++ .|..+|..|+.
T Consensus 86 ~~e~~~~y~~~~~~A~~e~d~~~~~~f~-~i~~~E~~H~~ 124 (134)
T cd01041 86 TYEYTEMYPEFAEVAEEEGFKEAARSFE-AIAEAEKVHAE 124 (134)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHH-HHHHHHHHHHH
Confidence 11233455666777899999999999 48999999985
No 12
>PF05138 PaaA_PaaC: Phenylacetic acid catabolic protein; InterPro: IPR007814 This family includes proteins such as PaaA and PaaC that are part of a catabolic pathway of phenylacetic acid []. These proteins may form part of a dioxygenase complex.; PDB: 3PWQ_K 3PVT_B 1OTK_B 3PW1_B 3PW8_B 3PVR_B 3PVY_B 3Q1G_A 3PF7_B 3PM5_C ....
Probab=95.23 E-value=0.077 Score=46.73 Aligned_cols=71 Identities=27% Similarity=0.332 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH------------------HccCCC---------------------cHHHHHHHHcCCC
Q 041347 71 FVKVAQDKGRHFTLLAAQLEEL------------------ARGLNV---------------------LPTAISRFRNGGD 111 (189)
Q Consensus 71 wl~VA~DEarHF~LL~~rL~el------------------ARGLDv---------------------~P~~i~k~~~~GD 111 (189)
+..+|.||..|..++-+.|.++ -|++.+ .-.....|.+..|
T Consensus 52 l~~ia~DelGHAr~ly~ll~el~g~G~~~d~la~~R~~~~~rn~~l~e~p~~dwa~~v~r~~l~d~~~~~~l~~l~~ssy 131 (263)
T PF05138_consen 52 LANIAQDELGHARLLYRLLEELEGEGRDEDDLAFLRDAREFRNLLLFEQPNGDWADTVARQFLFDRAGKVLLEALADSSY 131 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHCCCHHHHHHHHHHHTTCS-SSGGGGS---SHHHHHHHHHHHHHHHHHHHHHHTT-SB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHhhcccchhhhhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 5799999999999999999998 122221 1234556677777
Q ss_pred HHHHHHHHHhhhhhhhhhHHhhhHHHHHHHH
Q 041347 112 NETAELLERVVYREEITHCAARVRWFRYLCL 142 (189)
Q Consensus 112 ~~sa~iLe~iI~~DEI~HVa~G~rWF~~lC~ 142 (189)
..-++++.+ |..||--|+..|..|++.|+.
T Consensus 132 ~pla~~a~k-~~kEe~yH~~h~~~w~~rL~~ 161 (263)
T PF05138_consen 132 EPLAAIAAK-ILKEEAYHLRHGEDWLRRLGD 161 (263)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 888999996 899999999999999999993
No 13
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=95.16 E-value=0.64 Score=34.44 Aligned_cols=106 Identities=20% Similarity=0.158 Sum_probs=70.6
Q ss_pred HHHHHHHhHHHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHHH--------------------
Q 041347 34 AIVHSLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEELA-------------------- 93 (189)
Q Consensus 34 alLHaiAHIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~elA-------------------- 93 (189)
..|=...+.|+.+....+-..+-|. ..++| .+-.=+-+.+.+|..|+..+.+|+..++
T Consensus 2 ~~Ln~~l~~e~~~~~~y~~~~~~~~-~~~~~-~l~~~~~~~a~e~~~h~~~l~e~i~~lgg~p~~~~~~~~~~~~~~~~~ 79 (142)
T PF00210_consen 2 EALNEQLALELQASQQYLNMHWNFD-GPNFP-GLAKFFQDQAEEEREHADELAERILMLGGKPSGSPVEIPEIPKPPEWT 79 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-STTHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTTS-SSTSHHHHHHHHSSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCCch-hhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHhhhhhccccCC
Confidence 4556677788888887665544443 12222 2222233578899999999999999871
Q ss_pred --------------ccCCCcHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHH
Q 041347 94 --------------RGLNVLPTAISRFRNGGDNETAELLERVVYREEITHCAARVRWFRYLCL 142 (189)
Q Consensus 94 --------------RGLDv~P~~i~k~~~~GD~~sa~iLe~iI~~DEI~HVa~G~rWF~~lC~ 142 (189)
...+.--.+++.....||..+.++++. +..+|..|+..=..|+..+++
T Consensus 80 ~~~~~l~~~l~~e~~~~~~~~~l~~~a~~~~D~~t~~~~~~-~l~~~~~~~~~l~~~l~~l~~ 141 (142)
T PF00210_consen 80 DPREALEAALEDEKEIIEEYRELIKLAEKEGDPETADFLDE-FLEEEEKHIWMLQAHLTNLKR 141 (142)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhc
Confidence 111111122334445589999999984 899999999988888887764
No 14
>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain. Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz
Probab=95.06 E-value=0.68 Score=37.82 Aligned_cols=99 Identities=16% Similarity=0.157 Sum_probs=69.4
Q ss_pred HHHHHHH--hHHHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHHH---ccC-----------C
Q 041347 34 AIVHSLA--HTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEELA---RGL-----------N 97 (189)
Q Consensus 34 alLHaiA--HIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~elA---RGL-----------D 97 (189)
.|+=.++ .=|+.||-..| ..+|.- .-..++.+=+..+|.||-.|+.||.+++..|. .|. |
T Consensus 24 ~l~~~~gG~~gEl~ai~qYl--~q~~~~--~~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~~~~g~pw~~~yv~~~~d 99 (156)
T cd01051 24 LLQEQLGGAFGELSAAMQYL--FQSFNF--REDPKYRDLLLDIGTEELSHLEMVATLIAMLLKDSQGVPWTAAYIQSSGN 99 (156)
T ss_pred HHHHHhCCccHHHHHHHHHH--HHHhhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCCCcccCCCCC
Confidence 3444444 57999998876 455532 24578899999999999999999999999882 221 1
Q ss_pred CcH--------------HHHHHHHcCCCHHHHHHHHHhhhhhhhhhHHhhhHHH
Q 041347 98 VLP--------------TAISRFRNGGDNETAELLERVVYREEITHCAARVRWF 137 (189)
Q Consensus 98 v~P--------------~~i~k~~~~GD~~sa~iLe~iI~~DEI~HVa~G~rWF 137 (189)
+.. .+.+.++...|....++|.. |..||+.|...=-+++
T Consensus 100 ~~~~L~~ni~aE~~Ai~~Y~~l~~~~~Dp~v~~~l~~-I~~rE~~H~~~f~~~l 152 (156)
T cd01051 100 LVADLRSNIAAESRARLTYERLYEMTDDPGVKDTLSF-LLVREIVHQNAFGKAL 152 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 111 22334445678888889995 8999999987543333
No 15
>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain. Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.
Probab=95.05 E-value=0.21 Score=41.65 Aligned_cols=85 Identities=15% Similarity=0.177 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHH--------------HccC---------C--
Q 041347 43 ESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEEL--------------ARGL---------N-- 97 (189)
Q Consensus 43 El~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~el--------------ARGL---------D-- 97 (189)
|+.|+.|+-=-+.-+. + ..-..-.-+.+.+|.+|+.+..++|.++ +-+| .
T Consensus 12 E~gA~~IY~gQ~~~~~---~--~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps~l~PlW~~~gf~lG~~tal~G~~~a 86 (165)
T cd01042 12 EVGAVRIYRGQLAVAR---D--PAVRPLIKEMLDEEKDHLAWFEELLPELGVRPSLLLPLWYVAGFALGALTALLGKKAA 86 (165)
T ss_pred hHHHHHHHHHHHHHhC---C--HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHhhChHHH
Confidence 6666655322222221 1 3444555678899999999999999999 1111 0
Q ss_pred -------------CcHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhHHhh
Q 041347 98 -------------VLPTAISRFRNGGDNETAELLERVVYREEITHCAAR 133 (189)
Q Consensus 98 -------------v~P~~i~k~~~~GD~~sa~iLe~iI~~DEI~HVa~G 133 (189)
.-...+++|...+|.++.++|++ +..||+.|-..+
T Consensus 87 ~~~~~avE~~V~~Hy~~ql~~L~~~~d~~l~~~l~~-~r~DE~~H~d~A 134 (165)
T cd01042 87 MACTAAVETVVEEHYNDQLRELPAQPDKELRAIIEQ-FRDDELEHADIA 134 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHH-HHHHHHHHHHHH
Confidence 01123455655569999999996 899999997665
No 16
>TIGR02158 PA_CoA_Oxy3 phenylacetate-CoA oxygenase, PaaI subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=94.70 E-value=0.14 Score=44.80 Aligned_cols=72 Identities=18% Similarity=0.218 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----------------------------------HccCCCcH---HHHHHHHcCCCHH
Q 041347 71 FVKVAQDKGRHFTLLAAQLEEL----------------------------------ARGLNVLP---TAISRFRNGGDNE 113 (189)
Q Consensus 71 wl~VA~DEarHF~LL~~rL~el----------------------------------ARGLDv~P---~~i~k~~~~GD~~ 113 (189)
+..++.||..|.+++-+.+.++ +|++=+.. ...+.|.+..|..
T Consensus 28 lanialD~lGhAr~~y~~a~el~g~~ed~La~~R~~~~frn~~l~e~P~gdwa~tv~r~~l~d~~~~~~l~~L~~ss~~p 107 (237)
T TIGR02158 28 LANIALDLLGHARMFLSLAGQLGGGDEDTLAFFRDEAEFRNLRLTELPNGDFALTIARQFLYDAYKVLLLEALTQSRDVP 107 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhcChHHhhhhHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcHH
Confidence 4578888888888888888887 22222221 2345688888888
Q ss_pred HHHHHHHhhhhhhhhhHHhhhHHHHHHHHH
Q 041347 114 TAELLERVVYREEITHCAARVRWFRYLCLR 143 (189)
Q Consensus 114 sa~iLe~iI~~DEI~HVa~G~rWF~~lC~~ 143 (189)
-++|..| |..||--|+..|..|+..|++.
T Consensus 108 la~ia~K-~~kEe~yH~~h~~~w~~rL~~g 136 (237)
T TIGR02158 108 LAAIAAK-ALKEARYHLQHAKTWLERLGLG 136 (237)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHhC
Confidence 8999996 8999999999999999999954
No 17
>TIGR02156 PA_CoA_Oxy1 phenylacetate-CoA oxygenase, PaaG subunit. Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.
Probab=94.70 E-value=0.13 Score=46.33 Aligned_cols=71 Identities=20% Similarity=0.115 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------------------------HccCCCcHH---HHHHHHcCCCHHH
Q 041347 71 FVKVAQDKGRHFTLLAAQLEEL---------------------------------ARGLNVLPT---AISRFRNGGDNET 114 (189)
Q Consensus 71 wl~VA~DEarHF~LL~~rL~el---------------------------------ARGLDv~P~---~i~k~~~~GD~~s 114 (189)
+..++.||.-|..+|-..+.+| +|++=+.-. ....|.+..|..-
T Consensus 59 l~niaqDelGHar~ly~~a~~LG~~r~ed~~a~~r~~~~f~nl~e~P~~dwA~tivr~~l~D~~~~~~~~~L~~SSy~pl 138 (289)
T TIGR02156 59 LMAKVQDEAGHGLYLYAAAETLGVSREELLDALLTGKAKYSSIFNYPTLTWADIGVIGWLVDGAAIMNQTPLCRCSYGPY 138 (289)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHhcChHhhccchhCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 5799999999999999999998 333322211 2346777788888
Q ss_pred HHHHHHhhhhhhhhhHHhhhHHHHHHHH
Q 041347 115 AELLERVVYREEITHCAARVRWFRYLCL 142 (189)
Q Consensus 115 a~iLe~iI~~DEI~HVa~G~rWF~~lC~ 142 (189)
++|+.+ |+.||-=|+..|..|+..||+
T Consensus 139 A~ia~K-i~KEe~yH~rh~~~wl~rL~~ 165 (289)
T TIGR02156 139 SRAMVR-ICKEESFHQRQGYEIMLTLAR 165 (289)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHc
Confidence 899996 899999999999999999996
No 18
>PRK13778 paaA phenylacetate-CoA oxygenase subunit PaaA; Provisional
Probab=94.66 E-value=0.14 Score=46.82 Aligned_cols=71 Identities=20% Similarity=0.101 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------------------------HccCCCcHH---HHHHHHcCCCHHH
Q 041347 71 FVKVAQDKGRHFTLLAAQLEEL---------------------------------ARGLNVLPT---AISRFRNGGDNET 114 (189)
Q Consensus 71 wl~VA~DEarHF~LL~~rL~el---------------------------------ARGLDv~P~---~i~k~~~~GD~~s 114 (189)
+..++.||.-|..+|-..+++| +||+=+.-. ....|.+..+..-
T Consensus 77 l~niaqDelGHa~~ly~~aeeLG~~r~e~~~a~~r~~~~f~n~fe~P~~dwAdtvvr~~L~D~a~~~~~~~L~~sSy~pl 156 (314)
T PRK13778 77 LLAKVQDEAGHGLYLYSAAETLGVSREELIDDLLSGKAKYSSIFNYPTLTWADVGVIGWLVDGAAIMNQVPLCRCSYGPY 156 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHhcchHHhcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 5799999999999999999998 333322211 2346778888888
Q ss_pred HHHHHHhhhhhhhhhHHhhhHHHHHHHH
Q 041347 115 AELLERVVYREEITHCAARVRWFRYLCL 142 (189)
Q Consensus 115 a~iLe~iI~~DEI~HVa~G~rWF~~lC~ 142 (189)
++|+.+ |..||-=|++.|..|+..||+
T Consensus 157 A~~a~K-i~KEe~yH~rhg~~wl~rL~~ 183 (314)
T PRK13778 157 ARAMVR-ICKEESFHQRQGEEILLALAR 183 (314)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 999996 899999999999999999996
No 19
>TIGR00754 bfr bacterioferritin. Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.
Probab=94.34 E-value=1.5 Score=34.84 Aligned_cols=103 Identities=15% Similarity=0.024 Sum_probs=68.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH-hhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHH------------HccCCC
Q 041347 32 RQAIVHSLAHTESWAIDLSWDII-ARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEEL------------ARGLNV 98 (189)
Q Consensus 32 RaalLHaiAHIEl~AIdLA~Dai-~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~el------------ARGLDv 98 (189)
-+.+|=..-.-|++|+-..+-.. +.+. .+++ .+-.-+...|.||..|..++.+|+.++ ..+-|+
T Consensus 7 ~~~~LN~~l~~E~~a~~~Y~~~~~~~~~--~~~~-g~a~~~~~~a~EE~~Ha~~laeri~~lGg~p~~~~i~~~~~~~~~ 83 (157)
T TIGR00754 7 VIQHLNKQLTNELTAINQYFLHARMQKN--WGLK-ELADHEYHESIDEMKHADEIIERILFLEGLPNLQDLGKLRIGETV 83 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCcCCCCCCCCCH
Confidence 34556666678999998754332 2332 3433 222335688999999999999999999 112121
Q ss_pred c--------------HHHH---HHHHcCCCHHHHHHHHHhhhhhhhhhHHhhhHHHH
Q 041347 99 L--------------PTAI---SRFRNGGDNETAELLERVVYREEITHCAARVRWFR 138 (189)
Q Consensus 99 ~--------------P~~i---~k~~~~GD~~sa~iLe~iI~~DEI~HVa~G~rWF~ 138 (189)
. ..+. +.....||..+..+|+. |..||..|..+=..|+.
T Consensus 84 ~e~l~~~l~~E~~~~~~~~e~i~~A~~~~D~~t~~ll~~-~i~eee~h~~~l~~~l~ 139 (157)
T TIGR00754 84 REMLEADLALELDVLNRLKEAIAYAEEVRDYVSRDLLEE-ILEDEEEHIDWLETQLE 139 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 1 1111 11235799999999995 89999999877666665
No 20
>PRK13456 DNA protection protein DPS; Provisional
Probab=94.15 E-value=0.66 Score=39.70 Aligned_cols=101 Identities=25% Similarity=0.267 Sum_probs=59.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHH-HHHHHHHHHHHHHHHHHccCCC-------------
Q 041347 33 QAIVHSLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQ-DKGRHFTLLAAQLEELARGLNV------------- 98 (189)
Q Consensus 33 aalLHaiAHIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~-DEarHF~LL~~rL~elARGLDv------------- 98 (189)
+.+|-.-.=-|+.|+=-.| ..+|.. .++-.+=...+++.+. ||.+||.+|.+|+.+|+-=.+.
T Consensus 22 i~lLn~AlA~E~~a~~~Y~--~~a~~~-~G~~~e~V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~~p~~~~~ls~~~~ 98 (186)
T PRK13456 22 VELLVKNAAAEFTTYYYYT--ILRAHL-IGLEGEGLKEIAEDARLEDRNHFEALVPRIYELGGKLPRDIREFHDISACPD 98 (186)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHH-hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHhhhhcCcc
Confidence 3333333334666654443 334421 2444445556777777 9999999999999999222221
Q ss_pred -----cH-----HH--------------HH--HHHcCCCHHHHHHHHHhhhhhhhhhHHhhhHHHHHHH
Q 041347 99 -----LP-----TA--------------IS--RFRNGGDNETAELLERVVYREEITHCAARVRWFRYLC 141 (189)
Q Consensus 99 -----~P-----~~--------------i~--k~~~~GD~~sa~iLe~iI~~DEI~HVa~G~rWF~~lC 141 (189)
+| .+ .+ ++....|..+..++.. |+.||+.|-. ||.-+-
T Consensus 99 ~~~p~d~tdv~~mL~~~L~AEr~AI~~Y~eii~~~~~kDp~T~~l~~~-IL~dE~eH~~----dl~~lL 162 (186)
T PRK13456 99 AYLPENPTDPKEILKVLLEAERCAIRTYTEICDMTAGKDPRTYDLALA-ILQEEIEHEA----WFSELL 162 (186)
T ss_pred ccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHH-HHHHHHHHHH----HHHHHH
Confidence 12 11 11 1222347788888886 8999999975 555554
No 21
>PRK10304 ferritin; Provisional
Probab=93.04 E-value=1.9 Score=35.45 Aligned_cols=106 Identities=12% Similarity=0.004 Sum_probs=74.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHH-------------------
Q 041347 32 RQAIVHSLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEEL------------------- 92 (189)
Q Consensus 32 RaalLHaiAHIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~el------------------- 92 (189)
-+..|-.-.+.||.|+.+.+-...=| +..++| .|=.=+-+-+.||-.|...+.++|...
T Consensus 6 i~~~Ln~qin~El~As~~Yl~ma~~~-~~~gl~-g~A~~f~~qs~EE~~HA~kl~~~i~~rgg~~~~~~i~~p~~~~~s~ 83 (165)
T PRK10304 6 MIEKLNEQMNLELYSSLLYQQMSAWC-SYHTFE-GAAAFLRRHAQEEMTHMQRLFDYLTDTGNLPRINTVESPFAEYSSL 83 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-hhCCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeCCCCCCccccCCH
Confidence 45667777899999999877544434 335664 344445578999999999999999988
Q ss_pred --------HccCCCcH---HHHHHHHcCCCHHHHHHHHHhhhhh---hhhhHHhhhHHHHHH
Q 041347 93 --------ARGLNVLP---TAISRFRNGGDNETAELLERVVYRE---EITHCAARVRWFRYL 140 (189)
Q Consensus 93 --------ARGLDv~P---~~i~k~~~~GD~~sa~iLe~iI~~D---EI~HVa~G~rWF~~l 140 (189)
+-=..|+. .+++.-...+|..|...|+. ++.| |..||+.=..+++.+
T Consensus 84 ~e~~~~~l~~E~~vt~~i~~l~~~A~~~~D~~t~~fl~~-fl~EQveEe~~~~~l~~~l~~~ 144 (165)
T PRK10304 84 DELFQETYKHEQLITQKINELAHAAMTNQDYPTFNFLQW-YVSEQHEEEKLFKSIIDKLSLA 144 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHH-HHHHHHHHHHHHHHHHHHHHhh
Confidence 11111122 23445566799999999994 7888 999998777776655
No 22
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=92.38 E-value=3.9 Score=31.39 Aligned_cols=97 Identities=19% Similarity=0.095 Sum_probs=59.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHH-------------Hc----
Q 041347 32 RQAIVHSLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEEL-------------AR---- 94 (189)
Q Consensus 32 RaalLHaiAHIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~el-------------AR---- 94 (189)
-+..|=..-.-|+.|+-...-..+=+. ..+. ..+..=+-+.+.+|..|...+.+|+..| ..
T Consensus 7 ~~~~Ln~~la~e~~~~~~y~~~~~~~~-g~~f-~~l~~~~~~~~~ee~~Had~laEri~~lGg~p~~~~~~~~~~~~~~~ 84 (148)
T cd01052 7 LIELLNKAFADEWLAYYYYTILAKHVK-GPEG-EGIKEELEEAAEEELNHAELLAERIYELGGTPPRDPKDWYEISGCKC 84 (148)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc-CCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHHHHhcccc
Confidence 344455555667777775432222221 0111 2455556678999999999999999999 11
Q ss_pred ------cCCCcHH--------------HHHHHH--cCCCHHHHHHHHHhhhhhhhhhHH
Q 041347 95 ------GLNVLPT--------------AISRFR--NGGDNETAELLERVVYREEITHCA 131 (189)
Q Consensus 95 ------GLDv~P~--------------~i~k~~--~~GD~~sa~iLe~iI~~DEI~HVa 131 (189)
+-|+... +.+.++ ..||..+.++|+. |+.||..|+.
T Consensus 85 ~~~~~~~~~~~~~l~~~~~~e~~~i~~~~~~~~~a~~~D~~t~~ll~~-~l~de~~h~~ 142 (148)
T cd01052 85 GYLPPDPPDVKGILKVNLKAERCAIKVYKELCDMTHGKDPVTYDLALA-ILNEEIEHEE 142 (148)
T ss_pred cCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHH-HHHHHHHHHH
Confidence 1121111 111122 2389999999995 8999999985
No 23
>COG2406 Protein distantly related to bacterial ferritins [General function prediction only]
Probab=92.24 E-value=1.9 Score=36.43 Aligned_cols=108 Identities=25% Similarity=0.334 Sum_probs=71.4
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHH-HHHHHHHHHHHHH---------------
Q 041347 29 LQNRQAIVHSLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKG-RHFTLLAAQLEEL--------------- 92 (189)
Q Consensus 29 ~~~RaalLHaiAHIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEa-rHF~LL~~rL~el--------------- 92 (189)
.+.-+-+|-+-+--|+-+---. ++.||.- .+|-.+-..-++++|.+|- +||+|+..||+++
T Consensus 15 ~~kli~~Llka~AaE~tt~YYY--tilr~~l-~Gle~e~~keiae~Ar~E~r~H~e~i~~Ri~elg~~~Prd~~~l~dIS 91 (172)
T COG2406 15 KDKLIELLLKAAAAEWTTYYYY--TILRYAL-KGLEGEGIKEIAEEAREEDRKHFELIAPRIYELGGDLPRDMKKLHDIS 91 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHH-hccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhHHHHHhhc
Confidence 3445555555555666665333 5678752 3588888999999999886 5999999999999
Q ss_pred --------HccCCCcHHHHH----------------HHHcCCCHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHc
Q 041347 93 --------ARGLNVLPTAIS----------------RFRNGGDNETAELLERVVYREEITHCAARVRWFRYLCLRS 144 (189)
Q Consensus 93 --------ARGLDv~P~~i~----------------k~~~~GD~~sa~iLe~iI~~DEI~HVa~G~rWF~~lC~~~ 144 (189)
..--|+.-.++. -+....|..+-++-+ -|++|||.|-. ||--+-.+.
T Consensus 92 gC~~a~LPedp~D~~~~l~vlv~AE~CAir~ykeic~~T~GkDprTyeLa~-~IL~eEi~hr~----~~~~ll~~~ 162 (172)
T COG2406 92 GCKPAYLPEDPYDIDEILAVLVKAERCAIRAYKEICNLTAGKDPRTYELAE-AILREEIEHRT----WFLELLGKE 162 (172)
T ss_pred CCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHccccCCCcchHHHHH-HHHHHHHHHHH----HHHHHhccC
Confidence 122222222211 123445778888888 49999999964 776654433
No 24
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=90.62 E-value=5.2 Score=30.64 Aligned_cols=52 Identities=17% Similarity=0.126 Sum_probs=37.7
Q ss_pred HHHHHhHHHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041347 36 VHSLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEEL 92 (189)
Q Consensus 36 LHaiAHIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~el 92 (189)
+...-.+|.++..+.....-.-. ...-..=|...|.+|.+|...+.+.+.++
T Consensus 3 ~~~~~~~E~~~~~~Y~~la~~~~-----~~~~k~~f~~lA~~E~~H~~~~~~~~~~~ 54 (125)
T cd01044 3 LRKFQKDEITEAAIYRKLAKREK-----DPENREILLKLAEDERRHAEFWKKFLGKR 54 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34455788888877654443332 23466668899999999999999999876
No 25
>cd01046 Rubrerythrin_like rubrerythrin-like, diiron-binding domain. Rubrerythrin-like domain, similar to rubrerythrin, a nonheme iron binding domain found in many air-sensitive bacteria and archaea, and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system. The rubrerythrin protein has two domains, a binuclear metal center located within a four-helix bundle of the rubrerythrin domain, and a rubredoxin domain. The Rubrerythrin-like domains in this CD are singular domains (no C-terminus rubredoxin domain) and are phylogenetically distinct from rubrerythrin domains of rubrerythrin-rubredoxin proteins.
Probab=89.48 E-value=6.6 Score=30.32 Aligned_cols=93 Identities=14% Similarity=0.224 Sum_probs=66.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHH-----------------HccCC
Q 041347 35 IVHSLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEEL-----------------ARGLN 97 (189)
Q Consensus 35 lLHaiAHIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~el-----------------ARGLD 97 (189)
.|=.-.+-|+.|........ +.....++|. +-+=|-..|.+|..|...+.+.|..+ ....
T Consensus 5 ~L~~a~~~E~~a~~~Y~~~a-~~a~~eG~~~-~A~~f~~~a~eE~~HA~~~~~~l~~i~~~~~~~le~a~~~E~~~~~~- 81 (123)
T cd01046 5 DLEANFKGETTEVGMYLAMA-RVAQREGYPE-VAEELKRIAMEEAEHAARFAELLGKVSEDTKENLEMMLEGEAGANEG- 81 (123)
T ss_pred HHHHHHHhHHHHHHHHHHHH-HHHHHCCCHH-HHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhHHHHHHh-
Confidence 34445577888887654332 2222235554 44555578999999999999887654 2211
Q ss_pred CcHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhHHh
Q 041347 98 VLPTAISRFRNGGDNETAELLERVVYREEITHCAA 132 (189)
Q Consensus 98 v~P~~i~k~~~~GD~~sa~iLe~iI~~DEI~HVa~ 132 (189)
=|.+++.-+.-||..++..|+. |..+|-.|+..
T Consensus 82 -~~~~~~~A~~egd~~~~~~~~~-~~~~E~~H~~~ 114 (123)
T cd01046 82 -KKDAATEAKAEGLDEAHDFFHE-AAKDEARHGKM 114 (123)
T ss_pred -HHHHHHHHHHcCCHHHHHHHHH-HHHHHHHHHHH
Confidence 3788888899999999999994 89999999864
No 26
>COG3396 Uncharacterized conserved protein [Function unknown]
Probab=88.29 E-value=2 Score=38.71 Aligned_cols=71 Identities=27% Similarity=0.288 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH----------------------------------HccCCCcHHHHHHHHcCC---CHH
Q 041347 71 FVKVAQDKGRHFTLLAAQLEEL----------------------------------ARGLNVLPTAISRFRNGG---DNE 113 (189)
Q Consensus 71 wl~VA~DEarHF~LL~~rL~el----------------------------------ARGLDv~P~~i~k~~~~G---D~~ 113 (189)
+++.+.||..|-.+|-..+++| +||-=|.-..+-.+.... +..
T Consensus 54 la~~vqDe~GHg~~l~~laeel~Gk~~~d~la~~r~g~~k~n~~~n~P~~~Wadt~~~~fLvD~~~~~~l~~l~~ssy~P 133 (265)
T COG3396 54 LANIVQDEMGHGWLLYRLAEELEGKGREDDLAYLRDGRHKRNSLFNLPTGDWADTIVRGFLVDGAAIYQLEALADSSYGP 133 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHhhhHHHHHHHHcCCCccHHHHHHHHHHHhHHHHHHHHHHHhccchH
Confidence 5789999999999999999998 555555555555444444 446
Q ss_pred HHHHHHHhhhhhhhhhHHhhhHHHHHHHH
Q 041347 114 TAELLERVVYREEITHCAARVRWFRYLCL 142 (189)
Q Consensus 114 sa~iLe~iI~~DEI~HVa~G~rWF~~lC~ 142 (189)
-++|+.+ |..||--|-+.|--|+..+.+
T Consensus 134 lA~~a~k-~~kEe~fHl~~~~~~l~~l~~ 161 (265)
T COG3396 134 LARAAQK-ICKEEEFHLRHGKTWLKRLAN 161 (265)
T ss_pred HHHHHHH-HHHhHHHHHHHHHHHHHHHHh
Confidence 6888985 899999999999988888775
No 27
>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]. It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process
Probab=87.98 E-value=4.6 Score=33.84 Aligned_cols=69 Identities=17% Similarity=0.237 Sum_probs=51.6
Q ss_pred ChhHHHhHHHHHHHHHHHHHHHHHHHHHH-----------------------HccCC---------------CcHHHHHH
Q 041347 64 PREFFMDFVKVAQDKGRHFTLLAAQLEEL-----------------------ARGLN---------------VLPTAISR 105 (189)
Q Consensus 64 P~~Fy~Dwl~VA~DEarHF~LL~~rL~el-----------------------ARGLD---------------v~P~~i~k 105 (189)
........-+.+.+|..|..+..++|.++ .-|=. .--..+++
T Consensus 31 ~~~~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~l~Plw~~~g~~LG~~tal~G~~~~~a~t~avE~~V~~Hy~~Ql~~ 110 (172)
T PF03232_consen 31 DPELRPFLKEMAEEEKDHLAWFEQLLPELRVRPSLLNPLWYVAGFALGALTALLGDKAAMACTAAVETVVEEHYNDQLRE 110 (172)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhHHcCCCCcHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888889999999999999998 11111 11234556
Q ss_pred HHc---CCCHHHHHHHHHhhhhhhhhhHHhh
Q 041347 106 FRN---GGDNETAELLERVVYREEITHCAAR 133 (189)
Q Consensus 106 ~~~---~GD~~sa~iLe~iI~~DEI~HVa~G 133 (189)
|.. ..|.++.++|++ +..||+.|-..+
T Consensus 111 L~~~~~~~d~~l~~~i~~-~r~DE~~H~d~A 140 (172)
T PF03232_consen 111 LPAMGEEEDPELRAIIEQ-FRDDELEHRDTA 140 (172)
T ss_pred HHhccccchHHHHHHHHH-HHHHHHHHHHHH
Confidence 764 568889999996 899999998776
No 28
>PF13668 Ferritin_2: Ferritin-like domain
Probab=87.75 E-value=5.8 Score=30.40 Aligned_cols=96 Identities=21% Similarity=0.159 Sum_probs=67.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhcCCC---CCCChhHHHhHHHHHHHHHHHHHHHHHHHH---HH-HccCCC------cH-
Q 041347 35 IVHSLAHTESWAIDLSWDIIARFGKQ---KAMPREFFMDFVKVAQDKGRHFTLLAAQLE---EL-ARGLNV------LP- 100 (189)
Q Consensus 35 lLHaiAHIEl~AIdLA~Dai~RF~~~---~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~---el-ARGLDv------~P- 100 (189)
+|.-....|+.+++....++..|..+ ..++..-+.=+-+++.+|..|...|++.|. .. .-..|. ++
T Consensus 5 iL~~Al~lE~l~~~fY~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~E~~H~~~l~~~l~g~~~~~~~~~~~~~~~~~~~~ 84 (137)
T PF13668_consen 5 ILNFALNLEYLEADFYQQAAEGFTLQDNKAALDPEVRDLFQEIADQEQGHVDFLQAALEGGRPVPPPAYDFPFDPFTDDA 84 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCChhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccCCCCCHH
Confidence 55666789999999988888876311 257777777888899999999999999995 11 111222 11
Q ss_pred ---------------HHHHHHHcCCCHHHHHHHHHhhhhhhhhhHH
Q 041347 101 ---------------TAISRFRNGGDNETAELLERVVYREEITHCA 131 (189)
Q Consensus 101 ---------------~~i~k~~~~GD~~sa~iLe~iI~~DEI~HVa 131 (189)
.+..-.....|....+++.. |...|..|.+
T Consensus 85 ~~L~~A~~~E~~~~~~Y~g~~~~~~~~~~~~~~~~-i~~~Ea~H~~ 129 (137)
T PF13668_consen 85 SFLRLAYTLEDVGVSAYKGAAPQIEDPELKALAAS-IAGVEARHAA 129 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHHHHHHH
Confidence 12223344567777778885 8999999986
No 29
>cd07911 RNRR2_Rv0233_like Ribonucleotide Reductase R2-like protein, Mn/Fe-binding domain. Rv0233 is a Mycobacterium tuberculosis ribonucleotide reductase R2 protein with a heterodinuclear manganese/iron-carboxylate cofactor located in its metal center. The Rv0233-like family may represent a structural/functional counterpart of the evolutionary ancestor of the RNRR2's (Ribonucleotide Reductase, R2/beta subunit) and the bacterial multicomponent monooxygenases. RNRR2s belong to a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in prokaryotes and archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites.
Probab=87.08 E-value=4 Score=35.56 Aligned_cols=111 Identities=16% Similarity=0.150 Sum_probs=67.1
Q ss_pred CCChhhHHHHHHHHH---hHHH-HHHHHHHHHHhh-cCCCCCCCh---hHHHhHHHHHHHHHHHHHHHHHHHHHHHccC-
Q 041347 26 GNGLQNRQAIVHSLA---HTES-WAIDLSWDIIAR-FGKQKAMPR---EFFMDFVKVAQDKGRHFTLLAAQLEELARGL- 96 (189)
Q Consensus 26 ~~s~~~RaalLHaiA---HIEl-~AIdLA~Dai~R-F~~~~~lP~---~Fy~Dwl~VA~DEarHF~LL~~rL~elARGL- 96 (189)
+.++.-|-.+.+.++ +.|- .+-+|+ -+++ .. ..|. ..| ....+.+|++|...+..-|.++..+-
T Consensus 38 ~L~~~Er~~~~~~l~~f~~~D~~v~~~l~--~~~~~~~---~~~~~e~~~~--l~~q~~~EaiH~esYs~~l~tl~~~~~ 110 (280)
T cd07911 38 QLSEEERDLALRLCAGFIAGEEAVTLDLL--PLMMAMA---AEGRLEEEMY--LTQFLFEEAKHTDFFRRWLDAVGVSDD 110 (280)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhh---cCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 357888888887765 4453 222232 2222 11 2232 222 23679999999999999888872221
Q ss_pred --------------------------CCcHH-----------HHH-------------HHHcCC-CHHHHHHHHHhhhhh
Q 041347 97 --------------------------NVLPT-----------AIS-------------RFRNGG-DNETAELLERVVYRE 125 (189)
Q Consensus 97 --------------------------Dv~P~-----------~i~-------------k~~~~G-D~~sa~iLe~iI~~D 125 (189)
+-+|. +++ -++..| -..+.++++ .|.+|
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~lEGilf~sgF~~~~~~l~~~g~m~g~~~~i~-~I~RD 189 (280)
T cd07911 111 LSDLHTAVYREPFYEALPYAELRLYLDASPAAQVRASVTYNMIVEGVLAETGYYAWRTICEKRGILPGMQEGIR-RLGDD 189 (280)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcCHHHHHH-HHHHH
Confidence 11111 111 122233 234567777 69999
Q ss_pred hhhhHHhhhHHHHHHHHHc
Q 041347 126 EITHCAARVRWFRYLCLRS 144 (189)
Q Consensus 126 EI~HVa~G~rWF~~lC~~~ 144 (189)
|..||.+|..=|+.+.++.
T Consensus 190 E~~H~~fg~~l~~~l~~e~ 208 (280)
T cd07911 190 ESRHIAWGTFTCRRLVAAD 208 (280)
T ss_pred HHHHHHHHHHHHHHHHHHC
Confidence 9999999999999998653
No 30
>COG2193 Bfr Bacterioferritin (cytochrome b1) [Inorganic ion transport and metabolism]
Probab=86.50 E-value=7.5 Score=32.70 Aligned_cols=98 Identities=17% Similarity=0.161 Sum_probs=70.2
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHH------------------
Q 041347 31 NRQAIVHSLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEEL------------------ 92 (189)
Q Consensus 31 ~RaalLHaiAHIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~el------------------ 92 (189)
.-+..|+.+---|+-|||-.| .=+|--.+.++- ..+.-+.+.+.||-+|...|.+|+--|
T Consensus 6 ~Vi~~LN~~L~~EL~ainQYf-lHsrM~~~WG~~-~L~~~~~~esi~Em~HAd~lieRIlfLeG~Pnlq~~~~l~iG~tv 83 (157)
T COG2193 6 KVIRLLNEALGLELAAINQYF-LHSRMYKNWGLT-KLAAHEYHESIEEMKHADQLIERILFLEGLPNLQDLGKLRIGETV 83 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHhCcChH-HHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccccCCCH
Confidence 446788888899999999887 233433222221 233344578999999999999997766
Q ss_pred -----------HccCCCcHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhHH
Q 041347 93 -----------ARGLNVLPTAISRFRNGGDNETAELLERVVYREEITHCA 131 (189)
Q Consensus 93 -----------ARGLDv~P~~i~k~~~~GD~~sa~iLe~iI~~DEI~HVa 131 (189)
--+.+.-...|.-..+.+|.-|.++++. |+.||-.|.-
T Consensus 84 ~E~L~~DL~~E~~a~~~lk~~i~~~e~~~Dyvsrdl~~~-iL~deEEHid 132 (157)
T COG2193 84 KEMLEADLALEYEARDALKEAIAYCEEVQDYVSRDLLEE-ILADEEEHID 132 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHH-HHcchHHHHH
Confidence 2223334455677888999999999995 8999988974
No 31
>COG1633 Uncharacterized conserved protein [Function unknown]
Probab=85.55 E-value=15 Score=30.68 Aligned_cols=95 Identities=18% Similarity=0.213 Sum_probs=62.9
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHH-Hcc-----------------------C
Q 041347 41 HTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEEL-ARG-----------------------L 96 (189)
Q Consensus 41 HIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~el-ARG-----------------------L 96 (189)
-.|..||.-..-..-|+.+ .+...=+..+|.||.+|..++.+.|.++ .++ .
T Consensus 34 ~~E~eA~~fY~~lae~~~~-----~~~rk~~~~la~eE~~H~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (176)
T COG1633 34 RGELEAIKFYEELAERIED-----EEIRKLFEDLADEEMRHLRKFEKLLEKLTPKEVSSEEEEGEIESEILEYLQPGKEM 108 (176)
T ss_pred HHHHHHHHHHHHHHHhcCC-----HhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhcchhhhhccccCccccc
Confidence 5788888876555555531 2566667789999999999999999999 111 2
Q ss_pred CCc------------------HHHHHHHHcCCCHHHHHHHHHhhhhhhhhhHHhhhHHHHHHH
Q 041347 97 NVL------------------PTAISRFRNGGDNETAELLERVVYREEITHCAARVRWFRYLC 141 (189)
Q Consensus 97 Dv~------------------P~~i~k~~~~GD~~sa~iLe~iI~~DEI~HVa~G~rWF~~lC 141 (189)
+.. +.+-..+...-|....+++.+ |-.+|=+|+..=..=++.+|
T Consensus 109 ~~~~~~~~~I~~a~~~E~~t~~~Y~~~~~~~~~~~~~~~~~~-~a~~E~~H~~~l~~~~~~~~ 170 (176)
T COG1633 109 EKSVSYLEAIEAAMEAEKDTIEFYEELLDELVNEEAKKLFKT-IADDEKGHASGLLSLYNRLT 170 (176)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence 222 223334444555566668884 88999999875555555544
No 32
>cd07910 MiaE MiaE tRNA-modifying nonheme diiron monooxygenase, ferritin-like diiron-binding domain. MiaE is a nonheme diiron monooxygenase that catalyzes the posttranscriptional allylic hydroxylation of a modified nucleoside in tRNA called 2-methylthio-N-6-isopentenyl adenosine (ms2i6A). ms2i6A is found at position 37, next to the anticodon at the 3' position in almost all eukaryotic and bacterial tRNA's that read codons beginning with uridine. The miaE gene is absent in Escherichia coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species.
Probab=84.63 E-value=4.3 Score=34.70 Aligned_cols=74 Identities=23% Similarity=0.324 Sum_probs=56.3
Q ss_pred ChhhHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCC----cHHHH
Q 041347 28 GLQNRQAIVHSLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEELARGLNV----LPTAI 103 (189)
Q Consensus 28 s~~~RaalLHaiAHIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~elARGLDv----~P~~i 103 (189)
-..+-..+|-.=||-|.-|--.|+-.+.||+. -.+...-....|.||-.||.++.+-|. +||+-. .+.+.
T Consensus 15 a~~nl~~iL~DHA~CE~KAA~~A~~L~~rY~~----~~~Lv~~m~~LarEEL~HFeqV~~im~--~Rgi~l~~~~~~~Ya 88 (180)
T cd07910 15 ALANLDEILIDHAHCEKKAASSAMSLIFRYPE----KPELVEAMSDLAREELQHFEQVLKIMK--KRGIPLGPDSKDPYA 88 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC----cHhHHHHHHHHHHHHHHHHHHHHHHHH--HcCCCCCCCCCCHHH
Confidence 44566677778889999888888778899973 367788889999999999999999888 477644 23355
Q ss_pred HHHH
Q 041347 104 SRFR 107 (189)
Q Consensus 104 ~k~~ 107 (189)
+.|.
T Consensus 89 ~~L~ 92 (180)
T cd07910 89 SGLR 92 (180)
T ss_pred HHHH
Confidence 5443
No 33
>PF02332 Phenol_Hydrox: Methane/Phenol/Toluene Hydroxylase; InterPro: IPR003430 Bacterial phenol hydroxylase (1.14.13.7 from EC) is a multicomponent enzyme that catabolises phenol and some of its methylated derivatives. This family contains both the P1 and P3 polypeptides of phenol hydroxlase and the alpha and beta chain of methane hydroxylase protein A. Methane hydroxylase protein A (1.14.13.25 from EC) is responsible for the initial oxygenation of methane to methanol in methanotrophs. It also catalyses the monohydroxylation of a variety of unactivated alkenes, alicyclic, aromatic and heterocyclic compounds. Also included in this family is toluene-4-monooxygenase system protein A (1.14.13 from EC), which hydroxylates toluene to form P-cresol.; GO: 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 3N20_B 3RNA_B 3N1X_B 3RNC_B 3RNG_B 3RNF_B 3N1Z_B 3RN9_B 3N1Y_B 3RNB_B ....
Probab=83.73 E-value=27 Score=29.94 Aligned_cols=105 Identities=26% Similarity=0.115 Sum_probs=80.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHH--------------------
Q 041347 33 QAIVHSLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEEL-------------------- 92 (189)
Q Consensus 33 aalLHaiAHIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~el-------------------- 92 (189)
...+=.+.|.|+.|-=... .+.||+ .......--+=-+.||-||...+.-++.++
T Consensus 76 ~~~~~~~~~~E~ga~~~~a-~~~r~~----~~~~i~n~~~f~a~DelR~~q~~~~~~~~~~~~~~~~~~~~k~~w~~~p~ 150 (233)
T PF02332_consen 76 KRHLGPLRHAEYGAQMASA-YIARFA----PGTAIRNAATFQAMDELRHAQRQALLLKELAGAYPDFAGAAKEAWLNDPA 150 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHH-----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHCCCSCCCTHHHHHHSHH
T ss_pred HHHcCCcchHHHHHHHHHH-HHHhhc----CcHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhCcccChHHHHHHhhCch
Confidence 3455678899999876432 578995 556666667778999999999999999988
Q ss_pred ----------------------HccCCCcH--------HHHHHHHcCCCHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHH
Q 041347 93 ----------------------ARGLNVLP--------TAISRFRNGGDNETAELLERVVYREEITHCAARVRWFRYLCL 142 (189)
Q Consensus 93 ----------------------ARGLDv~P--------~~i~k~~~~GD~~sa~iLe~iI~~DEI~HVa~G~rWF~~lC~ 142 (189)
|-+|=+-| .+.+.....||....-++. -|..||-.|.++|.-=|+++.+
T Consensus 151 wq~~R~~vE~~~~~~Dw~E~~va~nlv~e~l~~~l~~~~~~~~A~~nGD~~~~~l~~-~~q~d~~r~~~~~~al~~~~~~ 229 (233)
T PF02332_consen 151 WQPLRRLVEDLLVTYDWFEAFVALNLVFEPLFTNLLFVEFDRLAAANGDFLTPTLTS-SIQSDEARHMRWGDALFKMALE 229 (233)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Confidence 44443322 2345667789999999999 5899999999999998888875
Q ss_pred H
Q 041347 143 R 143 (189)
Q Consensus 143 ~ 143 (189)
.
T Consensus 230 ~ 230 (233)
T PF02332_consen 230 D 230 (233)
T ss_dssp T
T ss_pred C
Confidence 4
No 34
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=82.25 E-value=18 Score=32.92 Aligned_cols=90 Identities=22% Similarity=0.252 Sum_probs=60.0
Q ss_pred HHhHH-HHHHHHHHHHHHHHHHHHHH----------------HccCCC----cH--HH----------------HHHHHc
Q 041347 68 FMDFV-KVAQDKGRHFTLLAAQLEEL----------------ARGLNV----LP--TA----------------ISRFRN 108 (189)
Q Consensus 68 y~Dwl-~VA~DEarHF~LL~~rL~el----------------ARGLDv----~P--~~----------------i~k~~~ 108 (189)
+..|+ +=..||.||-.+|++.|.-- ..|.|. +| .+ +.++.+
T Consensus 95 w~~w~~~WtaEE~rHg~aL~~YL~~sg~vdp~~le~~~~~~~~~G~~~~~~~~~~~~~~y~~fqE~aT~v~y~nl~~~a~ 174 (297)
T cd01050 95 WARWVRRWTAEENRHGDLLNKYLYLTGRVDPRALERTRQYLIGSGFDPGTDNSPYRGFVYTSFQELATRISHRNTARLAG 174 (297)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444 34789999999999888553 667665 34 11 123333
Q ss_pred CCCHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHcCCCCCccCccccccccccCCCCCcchhhHHHHHHHHHHHh
Q 041347 109 GGDNETAELLERVVYREEITHCAARVRWFRYLCLRSGYPTLLQDSLAPLESEAGENGCTTEENEEFIQNFRAMVRT 184 (189)
Q Consensus 109 ~GD~~sa~iLe~iI~~DEI~HVa~G~rWF~~lC~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~lv~~ 184 (189)
.||..-++|+. .|-.||..|..+=.+-+ -.-...+| ++.+..|...+++
T Consensus 175 ~gdPvL~~i~~-~IA~DE~rH~~fy~~~v---~~~le~dp-----------------------~~~~~Ai~~v~~~ 223 (297)
T cd01050 175 AGDPVLAKLLG-RIAADEARHEAFYRDIV---EALFELDP-----------------------DGAVLAFADMMRK 223 (297)
T ss_pred CCChHHHHHHH-HHHHHHHHHHHHHHHHH---HHHHHhCc-----------------------hHHHHHHHHHHHh
Confidence 48888899999 69999999998744333 33344454 2348888888876
No 35
>cd01056 Euk_Ferritin eukaryotic ferritins. Eukaryotic Ferritin (Euk_Ferritin) domain. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary role, negatively charged r
Probab=80.84 E-value=27 Score=27.86 Aligned_cols=108 Identities=19% Similarity=0.163 Sum_probs=73.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhcCCCC--CCChhHHHhHHHHHHHHHHHHHHHHHHHHHHHcc---------------
Q 041347 33 QAIVHSLAHTESWAIDLSWDIIARFGKQK--AMPREFFMDFVKVAQDKGRHFTLLAAQLEELARG--------------- 95 (189)
Q Consensus 33 aalLHaiAHIEl~AIdLA~Dai~RF~~~~--~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~elARG--------------- 95 (189)
...|....+.|+.|+...+-...=|.. . ++| .|-.=+-+-|.+|-.|...+.+++..++-.
T Consensus 5 ~~~Ln~~i~~El~as~~Yl~~a~~~~~-~~~~l~-g~a~~f~~~a~eE~~HA~~l~~~i~~rgg~~~~~~i~~~~~~~~~ 82 (161)
T cd01056 5 EAALNKQINLELNASYVYLSMAAYFDR-DDVALP-GFAKFFRKLSDEEREHAEKLIKYQNKRGGRVVLQDIKKPEKDEWG 82 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcc-ccccch-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCCcccC
Confidence 467888899999999998766555642 3 454 344445578999999999999999988000
Q ss_pred ---------C----CCcH---HHHHHHHcCCCHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHH
Q 041347 96 ---------L----NVLP---TAISRFRNGGDNETAELLERVVYREEITHCAARVRWFRYLCL 142 (189)
Q Consensus 96 ---------L----Dv~P---~~i~k~~~~GD~~sa~iLe~iI~~DEI~HVa~G~rWF~~lC~ 142 (189)
| +++. .+++--.+.+|..+...|+.-++.|++.|++.=..++..+-.
T Consensus 83 ~~~e~l~~al~~E~~vt~~~~~l~~~A~~~~D~~t~~fl~~~fl~eQ~e~~~~~~~~l~~l~~ 145 (161)
T cd01056 83 SGLEALELALDLEKLVNQSLLDLHKLASEHNDPHLADFLESEFLEEQVESIKKLAGYITNLKR 145 (161)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCCHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 0 0111 122233456899999999932788999998776666666553
No 36
>cd01057 AAMH_A Aromatic and Alkene Monooxygenase Hydroxylase, subunit A, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit A (AAMH_A). Subunit A of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds, however, the beta-subunit lacks critical diiron ligands and a C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphtho
Probab=77.35 E-value=50 Score=31.75 Aligned_cols=101 Identities=17% Similarity=0.108 Sum_probs=69.0
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHH----------------------
Q 041347 35 IVHSLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEEL---------------------- 92 (189)
Q Consensus 35 lLHaiAHIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~el---------------------- 92 (189)
.+=++.|.|+.|.--.. .+.|+. .-..-..-.+--+.||-||..+..-++.+|
T Consensus 82 ~~~a~~~~Ey~a~~~~a-~~~R~a----~s~~irn~~~~qa~DelRhaQ~~~~~~~~l~k~~~GFd~~~~~~~~~~~~~~ 156 (465)
T cd01057 82 FLGAITPGEYAAVRGMA-MLGRFA----PAAELRNGYLMQMLDELRHTQIQLYLPHYYAKNYAGFDWAQKAFHGNWYAGA 156 (465)
T ss_pred HhccccHHHHHHHHHHH-HHHhhc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHhhCcHHHH
Confidence 44567789999886421 467774 233355556667889999999999888888
Q ss_pred -------------------HccCCCcH--------HHHHHHHcCCCHHHHHHHHHhhhhhhhhhHHhhhHHHHHHH
Q 041347 93 -------------------ARGLNVLP--------TAISRFRNGGDNETAELLERVVYREEITHCAARVRWFRYLC 141 (189)
Q Consensus 93 -------------------ARGLDv~P--------~~i~k~~~~GD~~sa~iLe~iI~~DEI~HVa~G~rWF~~lC 141 (189)
|-+|=+-| .+.+--..+||..+..++-. |..||-.|.+.|.-=+..+.
T Consensus 157 ~R~~~ed~~~t~D~~E~~valnlvfE~~ftnl~~~~~~~~Aa~nGD~~tptv~~S-~QsDe~Rh~~~g~~ll~~l~ 231 (465)
T cd01057 157 AKRFFFDGFITGDAVEAALALQFVFETAFTNLLFVALASDAAANGDYATPTVFLS-IQSDEARHMANGYPTLVLLE 231 (465)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHcCChhhHHHHHH-HHHHHHHHHHhHHHHHHHHH
Confidence 22222112 12233356788888888884 78999999999999883333
No 37
>PF00268 Ribonuc_red_sm: Ribonucleotide reductase, small chain; InterPro: IPR000358 Ribonucleotide reductase (1.17.4.1 from EC) [, ] catalyzes the reductive synthesis of deoxyribonucleotides from their corresponding ribonucleotides: 2'-deoxyribonucleoside diphosphate + oxidized thioredoxin + H2O = ribonucleoside diphosphate + reduced thioredoxin It provides the precursors necessary for DNA synthesis. RNRs divide into three classes on the basis of their metallocofactor usage. Class I RNRs, found in eukaryotes, bacteria, bacteriophage and viruses, use a diiron-tyrosyl radical, Class II RNRs, found in bacteria, bacteriophage, algae and archaea, use coenzyme B12 (adenosylcobalamin, AdoCbl). Class III RNRs, found in anaerobic bacteria and bacteriophage, use an FeS cluster and S-adenosylmethionine to generate a glycyl radical. Many organisms have more than one class of RNR present in their genomes. Ribonucleotide reductase is an oligomeric enzyme composed of a large subunit (700 to 1000 residues) and a small subunit (300 to 400 residues) - class II RNRs are less complex, using the small molecule B12 in place of the small chain []. The small chain binds two iron atoms [] (three Glu, one Asp, and two His are involved in metal binding) and contains an active site tyrosine radical. The regions of the sequence that contain the metal-binding residues and the active site tyrosine are conserved in ribonucleotide reductase small chain from prokaryotes, eukaryotes and viruses. We have selected one of these regions as a signature pattern. It contains the active site residue as well as a glutamate and a histidine involved in the binding of iron.; GO: 0004748 ribonucleoside-diphosphate reductase activity, 0009186 deoxyribonucleoside diphosphate metabolic process, 0055114 oxidation-reduction process; PDB: 1JK0_B 1SMS_B 2VUX_B 4DJN_B 3HF1_B 2RCC_B 2BQ1_I 1R2F_A 2R2F_A 2O1Z_A ....
Probab=72.48 E-value=21 Score=30.91 Aligned_cols=110 Identities=20% Similarity=0.151 Sum_probs=66.0
Q ss_pred ChhhHHHHHHHHHh---HH-HHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHH-----------
Q 041347 28 GLQNRQAIVHSLAH---TE-SWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEEL----------- 92 (189)
Q Consensus 28 s~~~RaalLHaiAH---IE-l~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~el----------- 92 (189)
+...|.++++.++= .| ...-++. ..+.+.- ..| +...=+...+.+|+.|-..++.-|..+
T Consensus 49 s~~e~~~~~~~l~~~~~~D~~v~~~l~-~~i~~~~---~~~-E~~~~l~~q~~~E~iH~~sYs~il~~l~~~~~~~~~~~ 123 (281)
T PF00268_consen 49 SEEEREAYKRILAFFAQLDSLVSENLL-PNIMPEI---TSP-EIRAFLTFQAFMEAIHAESYSYILDSLGNDPKERDEIF 123 (281)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHC---SSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHhHHHhhHH-HHHHHHc---CHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 67777777777763 22 1222221 2233332 234 223334457888999999988888777
Q ss_pred ----------------HccCC-------------------CcH--HHHHHHHcCCCH-HHHHHHHHhhhhhhhhhHHhhh
Q 041347 93 ----------------ARGLN-------------------VLP--TAISRFRNGGDN-ETAELLERVVYREEITHCAARV 134 (189)
Q Consensus 93 ----------------ARGLD-------------------v~P--~~i~k~~~~GD~-~sa~iLe~iI~~DEI~HVa~G~ 134 (189)
.+-++ ... .++.-|+..|-. .++++++ -|.+||.-|+.+|.
T Consensus 124 ~~~~~~~~l~~k~~~i~~~~~~~~~~~~~lv~~~~lEgi~f~s~F~~~~~l~~~g~m~g~~~~i~-~I~RDE~~H~~~~~ 202 (281)
T PF00268_consen 124 DWVEEDPELQKKLDWIEKWYEDNDSLAEKLVASVILEGILFYSGFAYILYLARQGKMPGLAEIIK-LIMRDESLHVEFGI 202 (281)
T ss_dssp HHHHHSHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHTTTHHHHHHHHHHHHTTSSHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred HHHHhhhHHhhHHHHHHhhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhHHHHHH-HHHHHHHHHHHHHH
Confidence 11111 111 122234555543 5577888 69999999999999
Q ss_pred HHHHHHHHH
Q 041347 135 RWFRYLCLR 143 (189)
Q Consensus 135 rWF~~lC~~ 143 (189)
.=|+.+++.
T Consensus 203 ~l~~~l~~e 211 (281)
T PF00268_consen 203 YLFRTLVEE 211 (281)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhhh
Confidence 999999976
No 38
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=72.21 E-value=10 Score=29.08 Aligned_cols=59 Identities=25% Similarity=0.309 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------------HccCCCcHH-----------------HHHHHHcCCCH
Q 041347 71 FVKVAQDKGRHFTLLAAQLEEL---------------------ARGLNVLPT-----------------AISRFRNGGDN 112 (189)
Q Consensus 71 wl~VA~DEarHF~LL~~rL~el---------------------ARGLDv~P~-----------------~i~k~~~~GD~ 112 (189)
+=+++.+|.+|+-.+.+|+..| ..+.|+... .|+.....||.
T Consensus 36 l~e~~~~~~~~~D~lAERi~~lgg~P~~~~~~~~~~s~l~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~i~~a~~~~D~ 115 (139)
T cd01043 36 FEELYDELREAIDEIAERIRALGGKPLGTLKEYAELSTIKEEPAGVLSAKEMVAELLEDYETLIEELREAIELADEAGDP 115 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 3367789999999999999988 133333221 12223336888
Q ss_pred HHHHHHHHhhhhhhhhhH
Q 041347 113 ETAELLERVVYREEITHC 130 (189)
Q Consensus 113 ~sa~iLe~iI~~DEI~HV 130 (189)
.++.+|+. |+.++-.|.
T Consensus 116 ~t~~ll~~-il~~~ek~~ 132 (139)
T cd01043 116 ATADLLTE-IIRELEKQA 132 (139)
T ss_pred HHHHHHHH-HHHHHHHHH
Confidence 88888885 666666553
No 39
>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.
Probab=69.75 E-value=39 Score=24.51 Aligned_cols=55 Identities=18% Similarity=0.180 Sum_probs=39.4
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHH
Q 041347 29 LQNRQAIVHSLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQ 88 (189)
Q Consensus 29 ~~~RaalLHaiAHIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~r 88 (189)
..+...+|-.....|..||...-.++-.+. +..-..=+.+.+.||.+|..+|.+.
T Consensus 84 ~~~~~~~l~~a~~~E~~~~~~Y~~~~~~~~-----d~~~~~~~~~l~~~E~~H~~~l~~~ 138 (139)
T cd01045 84 LMDPLEALRLAIEIEKDAIEFYEELAEKAE-----DPEVKKLFEELAEEERGHLRLLEEL 138 (139)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345566777778899999987655444442 3345555668999999999999864
No 40
>PF12902 Ferritin-like: Ferritin-like; PDB: 3HL1_A.
Probab=66.23 E-value=34 Score=29.61 Aligned_cols=54 Identities=19% Similarity=0.055 Sum_probs=43.8
Q ss_pred HHHHhHHHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041347 37 HSLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEEL 92 (189)
Q Consensus 37 HaiAHIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~el 92 (189)
+.=+-+|+.-|=..+=|.|.-. .+...+-+.=...||.||-.|+.|..+.|..+
T Consensus 2 q~Ai~lE~atip~YL~a~ySi~--~~~~~~~~~~i~~V~~eEMlHl~l~~Nll~al 55 (227)
T PF12902_consen 2 QQAIELELATIPPYLTALYSIK--PGTNEEARNLIRSVAIEEMLHLSLAANLLNAL 55 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHBS---TTSH-HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHcccC--CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4446789999988877777663 35667788889999999999999999999999
No 41
>cd01058 AAMH_B Aromatic and Alkene Monooxygenase Hydroxylase, subunit B, ferritin-like diiron-binding domain. Aromatic and Alkene Monooxygenase Hydroxylases, subunit B (AAMH_B). Subunit B (beta) of the soluble hydroxylase of multicomponent, aromatic and alkene monooxygenases are members of a superfamily of ferritin-like iron-storage proteins. AAMH exists as a hexamer (an alpha2-beta2-gamma2 homodimer) with each alpha-subunit housing one nonheme diiron center embedded in a four-helix bundle. The N-terminal domain of the alpha- and noncatalytic beta-subunits possess nearly identical folds; the beta-subunit lacks the C-terminal domain found in the alpha-subunit. Methane monooxygenase is a multicomponent enzyme found in methanotrophic bacteria that catalyzes the hydroxylation of methane and higher alkenes (as large as octane). Phenol monooxygenase, found in a diverse group of bacteria, catalyses the hydroxylation of phenol, chloro- and methyl-phenol and naphthol. Both enzyme systems consis
Probab=65.72 E-value=1e+02 Score=27.69 Aligned_cols=103 Identities=19% Similarity=0.059 Sum_probs=75.1
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHH----------------------
Q 041347 35 IVHSLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEEL---------------------- 92 (189)
Q Consensus 35 lLHaiAHIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~el---------------------- 92 (189)
.+=.+.|.|+.|.--. =.+.|++ .-..+..-.+=-+.||-||..++.-+...|
T Consensus 104 ~l~p~~~~E~ga~~~~-a~~~r~~----~~~~i~n~~~~qa~D~lR~aQ~~~~~~~~l~~~~~~~~~~~~k~~W~~dp~W 178 (304)
T cd01058 104 YLGPLRHVEHGLQMAN-AYVAQYA----PSTTITNAAAFQAMDKLRIAQDIAYRGLELDGNTPGFDGDAAKEAWEEDPAW 178 (304)
T ss_pred HHhhHHHHHHHHHHHH-HHHHhhc----chHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccCCCCCchHHHHHHhcCchh
Confidence 3356679998876532 1467774 445666677778999999999988776666
Q ss_pred ---------------------HccCCCcH--------HHHHHHHcCCCHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHH
Q 041347 93 ---------------------ARGLNVLP--------TAISRFRNGGDNETAELLERVVYREEITHCAARVRWFRYLCLR 143 (189)
Q Consensus 93 ---------------------ARGLDv~P--------~~i~k~~~~GD~~sa~iLe~iI~~DEI~HVa~G~rWF~~lC~~ 143 (189)
|-+|=+-| .+.+-....||..+.-++. -|..||-.|-+.|.-=|++++++
T Consensus 179 q~~R~~~E~~~~~~Dw~E~~va~nlv~e~l~~~l~~~~~~~~Aa~nGD~~t~~l~~-s~q~d~~Rh~~~~~alvk~l~~~ 257 (304)
T cd01058 179 QGLRELVEKLLVTYDWGEAFVAQNLVFDPLVGELVRRELDRLAASNGDTLTPLLTE-FMLDDAQRHRRWTDALVKTAAED 257 (304)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchhHHHHH-HHHHHHHHHHHHHHHHHHHHHcc
Confidence 22221111 1455666789999999998 48999999999999999999887
No 42
>PRK08326 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=65.50 E-value=12 Score=33.48 Aligned_cols=111 Identities=17% Similarity=0.143 Sum_probs=67.0
Q ss_pred CChhhHHHHHHHHH---hHHH-HHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHHHccCC-----
Q 041347 27 NGLQNRQAIVHSLA---HTES-WAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEELARGLN----- 97 (189)
Q Consensus 27 ~s~~~RaalLHaiA---HIEl-~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~elARGLD----- 97 (189)
.++.-|-.+.+.++ +.|. .+.+|. ..+..|.. .+-|. -..=....+.+|++|...+..-|..+ |++
T Consensus 56 Lt~~Er~~~~~ila~f~~~d~~V~~nl~-~~i~~~~~-~~~~e-~~~~l~~q~~~EaiH~e~Y~~~le~l--~~~~~~~~ 130 (311)
T PRK08326 56 LSDEERDYATRLCAQFIAGEEAVTLDIQ-PLISAMAA-EGRLE-DEMYLTQFAFEEAKHTEAFRRWFDAV--GVTEDLSV 130 (311)
T ss_pred CCHHHHHHHHHHHHHHHhhhHHHHHHHH-HHHhhccc-cCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHh--CCCHHHHH
Confidence 47778888877765 5553 233332 33444421 01122 22223478999999999999888776 111
Q ss_pred ---CcHHHHHHH-----------------------------------------------HcCCC-HHHHHHHHHhhhhhh
Q 041347 98 ---VLPTAISRF-----------------------------------------------RNGGD-NETAELLERVVYREE 126 (189)
Q Consensus 98 ---v~P~~i~k~-----------------------------------------------~~~GD-~~sa~iLe~iI~~DE 126 (189)
-+|.+.+|+ +..|- ...+++++ .|.+||
T Consensus 131 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~a~v~~~~~iEGi~f~sgF~~~~~~l~~~~~mpgl~~~i~-~I~RDE 209 (311)
T PRK08326 131 YTDDNPSYRQIFYEELPAALNRLSTDPSPENQVRASVTYNHVVEGVLAETGYYAWRKICVTRGILPGLQELVR-RIGDDE 209 (311)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHH-HHHHHH
Confidence 113343332 12222 23455666 589999
Q ss_pred hhhHHhhhHHHHHHHHH
Q 041347 127 ITHCAARVRWFRYLCLR 143 (189)
Q Consensus 127 I~HVa~G~rWF~~lC~~ 143 (189)
..||.+|..=++.+...
T Consensus 210 ~~H~~fg~~l~~~l~~e 226 (311)
T PRK08326 210 RRHIAWGTYTCRRLVAA 226 (311)
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999999999865
No 43
>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria. Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.
Probab=58.79 E-value=50 Score=25.93 Aligned_cols=45 Identities=27% Similarity=0.396 Sum_probs=34.5
Q ss_pred HhHHHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041347 40 AHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEEL 92 (189)
Q Consensus 40 AHIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~el 92 (189)
-..|..|=|......-+|+ +..- |..+|..|++|...|...++..
T Consensus 9 le~Ek~a~~~Y~~~~~k~~-----~~~~---F~~la~~E~~H~~~l~~L~~~~ 53 (135)
T cd01048 9 LEEEKLARDVYLALYEKFG-----GLRP---FSNIAESEQRHMDALKTLLERY 53 (135)
T ss_pred HHHHHHHHHHHHHHHHHhc-----Ccch---HHHHHHHHHHHHHHHHHHHHHc
Confidence 3678888888777777773 2222 4457999999999999999977
No 44
>COG4445 MiaE Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=56.70 E-value=55 Score=28.38 Aligned_cols=60 Identities=20% Similarity=0.352 Sum_probs=47.5
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCCcH
Q 041347 35 IVHSLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEELARGLNVLP 100 (189)
Q Consensus 35 lLHaiAHIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~elARGLDv~P 100 (189)
||-.=-|-|+-|---|+..+.+|+. -.+..+-.+..|.||-+||..+.+-|+ +||+-+-|
T Consensus 32 lLlDH~~CE~KAa~tAl~li~kY~~----~~~lv~km~~larEEL~HFeqV~eilq--~RnI~~~~ 91 (203)
T COG4445 32 LLLDHLHCELKAAQTALNLIRKYPS----NTDLVDKMVLLAREELHHFEQVLEILQ--ARNIPYVP 91 (203)
T ss_pred ehhhhHHHHHHHHHHHHHHHHHccc----hHHHHHHHHHHHHHHHHHHHHHHHHHH--HcCCcccc
Confidence 4444457799888888888999973 377888899999999999999998887 56666543
No 45
>cd01049 RNRR2 Ribonucleotide Reductase, R2/beta subunit, ferritin-like diiron-binding domain. Ribonucleotide Reductase, R2/beta subunit (RNRR2) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The RNR protein catalyzes the conversion of ribonucleotides to deoxyribonucleotides and is found in all eukaryotes, many prokaryotes, several viruses, and few archaea. The catalytically active form of RNR is a proposed alpha2-beta2 tetramer. The homodimeric alpha subunit (R1) contains the active site and redox active cysteines as well as the allosteric binding sites. The beta subunit (R2) contains a diiron cluster that, in its reduced state, reacts with dioxygen to form a stable tyrosyl radical and a diiron(III) cluster. This essential tyrosyl radical is proposed to generate a thiyl radical, located on a cysteine residue in the R1 active site that initiates ribonucleotide reduction. The beta subunit is composed of 10-13 helices, the 8 longest helices form an alpha-
Probab=52.40 E-value=56 Score=28.06 Aligned_cols=38 Identities=24% Similarity=0.276 Sum_probs=29.4
Q ss_pred HHcCCCH-HHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHc
Q 041347 106 FRNGGDN-ETAELLERVVYREEITHCAARVRWFRYLCLRS 144 (189)
Q Consensus 106 ~~~~GD~-~sa~iLe~iI~~DEI~HVa~G~rWF~~lC~~~ 144 (189)
|...|-. ..+++++ .|.+||..|+.+|..=++.+.++.
T Consensus 170 l~~~g~m~g~~~~i~-~I~RDE~~H~~~~~~~~~~l~~~~ 208 (288)
T cd01049 170 LARRGKMPGLAEIIE-LISRDESLHGDFACLLIRELLNEN 208 (288)
T ss_pred HHHCCCccchHHHhH-HHHccHHHHHHHHHHHHHHHHHhC
Confidence 3344433 4567887 699999999999999999999763
No 46
>PF13668 Ferritin_2: Ferritin-like domain
Probab=52.13 E-value=1e+02 Score=23.42 Aligned_cols=58 Identities=10% Similarity=0.067 Sum_probs=46.7
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHH
Q 041347 29 LQNRQAIVHSLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEE 91 (189)
Q Consensus 29 ~~~RaalLHaiAHIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~e 91 (189)
..+...+|-.-.=+|-.++.....++.++. ..+...=...++..|++|-.+++..|.+
T Consensus 80 ~~~~~~~L~~A~~~E~~~~~~Y~g~~~~~~-----~~~~~~~~~~i~~~Ea~H~~~ir~ll~~ 137 (137)
T PF13668_consen 80 FTDDASFLRLAYTLEDVGVSAYKGAAPQIE-----DPELKALAASIAGVEARHAAWIRNLLGQ 137 (137)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 335556666666889999999988888774 3567888899999999999999998853
No 47
>COG1084 Predicted GTPase [General function prediction only]
Probab=51.78 E-value=85 Score=29.52 Aligned_cols=85 Identities=15% Similarity=0.239 Sum_probs=56.7
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHHHccC--CCcHHHHHHH
Q 041347 29 LQNRQAIVHSLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEELARGL--NVLPTAISRF 106 (189)
Q Consensus 29 ~~~RaalLHaiAHIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~elARGL--Dv~P~~i~k~ 106 (189)
.+.|..=.+-+..+.---.|--++++-|||.-.+|| -||++++.+..| .+|++.-...+.- |.++ .+.-.++.++
T Consensus 41 ~kar~~e~~rv~t~~~i~~d~l~~iv~~~P~id~Lh-pFY~eLidvl~d-~d~~k~sLs~v~~-A~~~i~~l~~eYi~~l 117 (346)
T COG1084 41 VKAREFEIRRVKTASNIVRDRLDKIVERFPSLDDLH-PFYRELIDVLVD-IDHLKISLSAVSW-ASKIIEKLAREYIRLL 117 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccC-hHHHHHHHHHhC-HHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 344444466777777777777788899998655666 499999999884 6777665444433 2221 2344688888
Q ss_pred HcCCCHHHHH
Q 041347 107 RNGGDNETAE 116 (189)
Q Consensus 107 ~~~GD~~sa~ 116 (189)
+.+.|...+.
T Consensus 118 k~a~~~~~~~ 127 (346)
T COG1084 118 KAAKDPKEAN 127 (346)
T ss_pred hcCCChhHHH
Confidence 8887765544
No 48
>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain. This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio
Probab=51.69 E-value=1e+02 Score=24.01 Aligned_cols=54 Identities=13% Similarity=0.036 Sum_probs=38.8
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHH
Q 041347 31 NRQAIVHSLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQL 89 (189)
Q Consensus 31 ~RaalLHaiAHIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL 89 (189)
+-..+|-.-.-+|..||+..-.++-... + ..-..=+.+++.||..|..+|.+.|
T Consensus 101 ~~~~~L~~~~~~E~~ai~~Y~~~~~~~~---d--~~~r~ll~~I~~eE~~H~~~L~~~l 154 (154)
T cd07908 101 SIKEMLKLDIASEKAAIAKYKRQAETIK---D--PYIRALLNRIILDEKLHIKILEELL 154 (154)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHcC---C--HHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 3444666667899999999877665442 1 3444556789999999999998754
No 49
>PRK09614 nrdF ribonucleotide-diphosphate reductase subunit beta; Reviewed
Probab=51.12 E-value=45 Score=29.65 Aligned_cols=113 Identities=12% Similarity=0.054 Sum_probs=65.6
Q ss_pred CChhhHHHHHHHHHhHHHHHHHH--HHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHHHcc---------
Q 041347 27 NGLQNRQAIVHSLAHTESWAIDL--SWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEELARG--------- 95 (189)
Q Consensus 27 ~s~~~RaalLHaiAHIEl~AIdL--A~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~elARG--------- 95 (189)
.+++-|.++.|.++=. .+.|. +-+.+-.|...-..| +...=....+..|+.|-..+..-|..+.-.
T Consensus 51 Lt~~Er~~~~~~l~~~--~~~D~~v~~~~~~~~~~~~~~~-E~~~~~~~q~~~E~iH~~sYs~il~tl~~~~~~~~~f~~ 127 (324)
T PRK09614 51 LSDEEKNLYTRVFGGL--TLLDTLQNNNGMPNLMPDITTP-EEEAVLANIAFMEAVHAKSYSYIFSTLCSPEEIDEAFEW 127 (324)
T ss_pred CCHHHHHHHHHHHHHH--HHHHHHHHhhhHHHHHHHCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHH
Confidence 4777888888877742 22221 111111221111233 223334467888999998888888876100
Q ss_pred CCCcHHHHHH----------------------------------------HHcCCCH-HHHHHHHHhhhhhhhhhHHhhh
Q 041347 96 LNVLPTAISR----------------------------------------FRNGGDN-ETAELLERVVYREEITHCAARV 134 (189)
Q Consensus 96 LDv~P~~i~k----------------------------------------~~~~GD~-~sa~iLe~iI~~DEI~HVa~G~ 134 (189)
..-.|.+.+| |+..|-. .++++++ .|.+||.-|+.+|.
T Consensus 128 ~~~~p~l~~K~~~i~~~~~~~~~~~~~~~~~~~~~lEgi~f~sgF~~~~~l~~~g~m~g~~~~i~-~I~RDE~~H~~f~~ 206 (324)
T PRK09614 128 AEENPYLQKKADIIQDFYEPLKKKILRKAAVASVFLEGFLFYSGFYYPLYLARQGKMTGTAQIIR-LIIRDESLHGYYIG 206 (324)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccHHHHHH-HHHhhhHHHHHHHH
Confidence 0023333322 3333333 3466777 69999999999999
Q ss_pred HHHHHHHHH
Q 041347 135 RWFRYLCLR 143 (189)
Q Consensus 135 rWF~~lC~~ 143 (189)
.=++.+.++
T Consensus 207 ~l~~~l~~e 215 (324)
T PRK09614 207 YLFQEGLEE 215 (324)
T ss_pred HHHHHHHHh
Confidence 999999864
No 50
>cd01050 Acyl_ACP_Desat Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 1
Probab=51.02 E-value=32 Score=31.29 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041347 72 VKVAQDKGRHFTLLAAQLEEL 92 (189)
Q Consensus 72 l~VA~DEarHF~LL~~rL~el 92 (189)
-++|.||+||+..+.+.++.+
T Consensus 185 ~~IA~DE~rH~~fy~~~v~~~ 205 (297)
T cd01050 185 GRIAADEARHEAFYRDIVEAL 205 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999998876
No 51
>PHA02891 hypothetical protein; Provisional
Probab=48.85 E-value=18 Score=28.82 Aligned_cols=28 Identities=29% Similarity=0.487 Sum_probs=22.9
Q ss_pred HHHHHHccCCCcHHHHHHHHcCCCHHHH
Q 041347 88 QLEELARGLNVLPTAISRFRNGGDNETA 115 (189)
Q Consensus 88 rL~elARGLDv~P~~i~k~~~~GD~~sa 115 (189)
-|+.+.||=|.||.|++||-+.=|.+++
T Consensus 6 IMkdIKrGkDITPSMi~kFi~~ld~e~~ 33 (120)
T PHA02891 6 IMKDIKRGKDITPSMIKKFIELLDIEAA 33 (120)
T ss_pred HHHHhhccCCCCHHHHHHHHHHhcHHHH
Confidence 3566689999999999999887776653
No 52
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=48.83 E-value=55 Score=34.10 Aligned_cols=48 Identities=17% Similarity=0.142 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041347 41 HTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEEL 92 (189)
Q Consensus 41 HIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~el 92 (189)
-+|-.||++.-++.-+-. -|..=.+=+.+.|.+|-.|.++|.+.|..+
T Consensus 951 ~~Ekdai~fY~~la~~~~----d~e~~k~l~~~LA~EEk~Hl~~L~~~~d~~ 998 (1006)
T PRK12775 951 EFERRAVKFFKERVAETP----DGSVERQLYKELAAEEREHVALLTTEFERW 998 (1006)
T ss_pred HHHHHHHHHHHHHHhhCC----ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999876655442 222122224578999999999999999998
No 53
>PF11266 DUF3066: Protein of unknown function (DUF3066); InterPro: IPR022612 This cyanobacterial family of fatty aldehyde decarbonylases acts on mainly C16 and C18 substrates to form hydrocarbons and carbon monoxide []. Note that the corresponding EC number (4.1.99.5 from EC) dating from 1989 refers to a nonorthologous Pisum sativum enzyme that acts on C18 and longer chains and attaches the overly narrow narrow name octadecanal decarbonylase. ; PDB: 2OC5_A.
Probab=48.48 E-value=1.9e+02 Score=25.46 Aligned_cols=71 Identities=21% Similarity=0.285 Sum_probs=46.1
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHH-------------HHHHcC----------------------
Q 041347 65 REFFMDFVKVAQDKGRHFTLLAAQLEELARGLNVLPTAI-------------SRFRNG---------------------- 109 (189)
Q Consensus 65 ~~Fy~Dwl~VA~DEarHF~LL~~rL~elARGLDv~P~~i-------------~k~~~~---------------------- 109 (189)
.+..+++.+.+.=|.||.+=.. ..+|+|-|+|.|- ++-...
T Consensus 37 P~~~deL~rLakME~rH~kgF~----aCGrNL~V~~Dm~fA~~fF~~Lh~nFq~A~~~gk~~tCLlIQaliIE~FAIaAY 112 (219)
T PF11266_consen 37 PDQKDELIRLAKMENRHKKGFQ----ACGRNLGVTPDMPFAKEFFSPLHGNFQRAAAEGKVVTCLLIQALIIECFAIAAY 112 (219)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHH----HHHHHTT----HHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHTHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhHHH----HhccCCcCCCCcHHHHHHHHHHHHHHHHHHHcCCeeehHHHHHHHHHHHHHHHh
Confidence 3567889999999999976544 4477788777542 111122
Q ss_pred ------CCHHHHHHHHHhhhhhhhhhHHhhhHHHHHH
Q 041347 110 ------GDNETAELLERVVYREEITHCAARVRWFRYL 140 (189)
Q Consensus 110 ------GD~~sa~iLe~iI~~DEI~HVa~G~rWF~~l 140 (189)
-|.-+.+|-+- +..||-.|..+|-.|++--
T Consensus 113 niYIpVAD~FARkITeg-VVkDEy~HLNfGe~WLk~~ 148 (219)
T PF11266_consen 113 NIYIPVADPFARKITEG-VVKDEYTHLNFGEEWLKAN 148 (219)
T ss_dssp HHHGGGS-HHHHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred hhceecccHHHHHHHHH-HHhhHHHhcchHHHHHHHH
Confidence 34444556663 6789999999999999754
No 54
>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain. Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.
Probab=48.40 E-value=81 Score=24.01 Aligned_cols=23 Identities=22% Similarity=0.249 Sum_probs=19.0
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Q 041347 68 FMDFVKVAQDKGRHFTLLAAQLE 90 (189)
Q Consensus 68 y~Dwl~VA~DEarHF~LL~~rL~ 90 (189)
..-..+++.||..|...|.+.+.
T Consensus 102 ~~~~~~Ii~dE~~H~~~L~~~~~ 124 (125)
T cd01044 102 RPELKEIIADELEHEEVLIALLD 124 (125)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhh
Confidence 44556899999999999988764
No 55
>PF13794 MiaE_2: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like; PDB: 3EZ0_C.
Probab=48.07 E-value=1.4e+02 Score=25.71 Aligned_cols=103 Identities=23% Similarity=0.239 Sum_probs=63.9
Q ss_pred hHHHHHHHHHhHHHHHHH-HHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHH--------
Q 041347 31 NRQAIVHSLAHTESWAID-LSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEELARGLNVLPT-------- 101 (189)
Q Consensus 31 ~RaalLHaiAHIEl~AId-LA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~elARGLDv~P~-------- 101 (189)
+-+-||=.+|-.|+.|.+ ||-|+ ++. .+|.. .-...+.|.-|-.||..|.++|.++ |.|+...
T Consensus 6 ~v~~llg~lAy~eL~aF~rLa~da--~~A--P~l~~--r~ala~mAaae~~hf~~L~~~l~~~--G~d~~~am~pf~~~l 77 (185)
T PF13794_consen 6 AVVDLLGVLAYGELAAFERLAEDA--RMA--PTLAD--RIALARMAAAEFGHFERLEARLAER--GVDPEEAMEPFVGAL 77 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--CC---SSSTT--HHHHHHHHHHHHHHHHHHHHHHHHT--T--HHHHHGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--hhC--cCHHH--HHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHH
Confidence 345577788999999998 57775 553 24544 3467799999999999999999975 4443322
Q ss_pred ---------------HH-------------HHHHcCCCHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHH
Q 041347 102 ---------------AI-------------SRFRNGGDNETAELLERVVYREEITHCAARVRWFRYLCLR 143 (189)
Q Consensus 102 ---------------~i-------------~k~~~~GD~~sa~iLe~iI~~DEI~HVa~G~rWF~~lC~~ 143 (189)
++ .++...=|.++..++.. ++ ++-+|-.+-...++-.+..
T Consensus 78 d~f~~rT~P~dW~E~LvKaYVg~gla~DFy~~va~~L~~~~r~~v~~-vl-~~~~~s~f~~~~vraai~a 145 (185)
T PF13794_consen 78 DAFHARTRPSDWLESLVKAYVGDGLAADFYREVASGLDPETRALVLD-VL-ADTGHSEFAVAEVRAAIAA 145 (185)
T ss_dssp HHHHHTT--SSHHHHHHHHHHHHHHHHHHHHHHCCCS-HHHHHHHHH-HS---HHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCChHHHHHHHHHHHhHHHHHHHHHHhcCCHHHHHHHHH-Hh-ccccchHHHHHHHHHHHhh
Confidence 22 23333334555555553 33 5567777777777766665
No 56
>PRK07209 ribonucleotide-diphosphate reductase subunit beta; Validated
Probab=47.42 E-value=76 Score=29.16 Aligned_cols=109 Identities=17% Similarity=0.107 Sum_probs=66.6
Q ss_pred CChhhHHHHHHHHHhHHHHHHHH----H-HHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHH---------
Q 041347 27 NGLQNRQAIVHSLAHTESWAIDL----S-WDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEEL--------- 92 (189)
Q Consensus 27 ~s~~~RaalLHaiAHIEl~AIdL----A-~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~el--------- 92 (189)
.++.-|-++.+.++=. .+.|. . +..+++.- ...+...=....+.+|+.|-..++--|..+
T Consensus 91 Lt~~Er~~~~~il~ff--~~~Ds~v~~nl~~~l~~~i----~~pE~r~~l~~q~~~E~iHs~sYs~ildtl~~~~~e~f~ 164 (369)
T PRK07209 91 LTEDERRIVKRNLGFF--STADSLVANNIVLAIYRHI----TNPECRQYLLRQAFEEAIHTHAYQYIVESLGLDEGEIFN 164 (369)
T ss_pred CCHHHHHHHHHHHHHH--HHHHHHHHHhHHHHHHHHc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 4667777777777641 12221 1 12233332 223444455678999999999999888877
Q ss_pred ---------------H---ccC-CC---------cHHHHH----------------------HHHcCCCH-HHHHHHHHh
Q 041347 93 ---------------A---RGL-NV---------LPTAIS----------------------RFRNGGDN-ETAELLERV 121 (189)
Q Consensus 93 ---------------A---RGL-Dv---------~P~~i~----------------------k~~~~GD~-~sa~iLe~i 121 (189)
. +.+ |. ...+.+ -|...|-. .++++++ .
T Consensus 165 ~~~~~p~l~~K~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lva~~~ilEGi~FysgFa~~~~l~r~g~M~G~~~~i~-~ 243 (369)
T PRK07209 165 MYHEVPSIRAKDEFLIPFTRSLTDPNFKTGTPENDQKLLRNLIAFYCIMEGIFFYVGFTQILSLGRQNKMTGIAEQYQ-Y 243 (369)
T ss_pred HHHhCHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcccHHHHHH-H
Confidence 1 111 10 111111 22344444 4577888 6
Q ss_pred hhhhhhhhHHhhhHHHHHHHH
Q 041347 122 VYREEITHCAARVRWFRYLCL 142 (189)
Q Consensus 122 I~~DEI~HVa~G~rWF~~lC~ 142 (189)
|.+||..|+.+|..=++.++.
T Consensus 244 I~RDE~~H~~f~~~l~~~l~~ 264 (369)
T PRK07209 244 ILRDESMHLNFGIDLINQIKL 264 (369)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999986
No 57
>PRK14983 aldehyde decarbonylase; Provisional
Probab=46.02 E-value=1.6e+02 Score=26.14 Aligned_cols=71 Identities=21% Similarity=0.266 Sum_probs=48.9
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHH----------------------------HHHH----------
Q 041347 65 REFFMDFVKVAQDKGRHFTLLAAQLEELARGLNVLPTA----------------------------ISRF---------- 106 (189)
Q Consensus 65 ~~Fy~Dwl~VA~DEarHF~LL~~rL~elARGLDv~P~~----------------------------i~k~---------- 106 (189)
.+..+++.+.|.=|.||.+=.. ..+|+|.|+|.| |+.|
T Consensus 47 P~~~dEL~rLakME~rH~kgF~----aCGrNL~V~~Dm~fA~~fF~~Lh~nFq~A~~egkv~TCLlIQaLiIE~FAIaAY 122 (231)
T PRK14983 47 PEHAEELTRLAKMEMRHKKGFT----ACGRNLGVTPDMPFAKEFFSPLHGNFQKAAAEGKVVTCLLIQALIIEAFAIAAY 122 (231)
T ss_pred cccHHHHHHHHHHHHHHHhHHH----HHcccCcCCCCcHHHHHHHHHHHHHHHHHHhcCCeeehHHHHHHHHHHHHHHHH
Confidence 3567889999999999976544 347777776643 2211
Q ss_pred ---HcCCCHHHHHHHHHhhhhhhhhhHHhhhHHHHHH
Q 041347 107 ---RNGGDNETAELLERVVYREEITHCAARVRWFRYL 140 (189)
Q Consensus 107 ---~~~GD~~sa~iLe~iI~~DEI~HVa~G~rWF~~l 140 (189)
-.+-|.-+.+|-+- +..||-.|..+|-.|++--
T Consensus 123 niYIpVAD~FARkITeg-VVkDEY~HLN~Ge~WLk~~ 158 (231)
T PRK14983 123 NIYIPVADPFARKITEG-VVKDEYLHLNFGEEWLKAN 158 (231)
T ss_pred hhccccccHHHHHHHHh-HHhhHHHhcchHHHHHHHH
Confidence 12334555567774 6889999999999999753
No 58
>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.
Probab=45.51 E-value=1.1e+02 Score=23.46 Aligned_cols=60 Identities=10% Similarity=-0.016 Sum_probs=38.1
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCChhHHHhHHH-HHHHHHHHHHHHHHHHHHH
Q 041347 30 QNRQAIVHSLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVK-VAQDKGRHFTLLAAQLEEL 92 (189)
Q Consensus 30 ~~RaalLHaiAHIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~-VA~DEarHF~LL~~rL~el 92 (189)
.-+..|-.+++|-+..+++..-+.+---. ..-..=..+|++ .+.+|.+|..+|.+.|..|
T Consensus 73 ~~~~~l~~~~~~E~~e~~~~y~~~~~~A~---~e~d~~~~~~f~~i~~~E~~H~~~l~~~l~~l 133 (134)
T cd01041 73 DTLENLKAAIAGETYEYTEMYPEFAEVAE---EEGFKEAARSFEAIAEAEKVHAERYKKALENL 133 (134)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34566777777766667776443322111 122333455555 8999999999999988753
No 59
>cd00904 Ferritin Ferritin iron storage proteins. Ferritins are the primary iron storage proteins of most living organisms and members of a broad superfamily of ferritin-like diiron-carboxylate proteins. The iron-free (apoferritin) ferritin molecule is a protein shell composed of 24 protein chains arranged in 432 symmetry. Iron storage involves the uptake of iron (II) at the protein shell, its oxidation by molecular oxygen at the dinuclear ferroxidase centers, and the movement of iron (III) into the cavity for deposition as ferrihydrite; the protein shell can hold up to 4500 iron atoms. In vertebrates, two types of chains (subunits) have been characterized, H or M (fast) and L (slow), which differ in rates of iron uptake and mineralization. Bacterial non-heme ferritins are composed only of H chains. Fe(II) oxidation in the H/M subunits take place initially at the ferroxidase center, a carboxylate-bridged diiron center, located within the subunit four-helix bundle. In a complementary rol
Probab=43.68 E-value=1.7e+02 Score=23.40 Aligned_cols=105 Identities=18% Similarity=0.124 Sum_probs=69.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHhhcCCCC--CCChhHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHc--
Q 041347 33 QAIVHSLAHTESWAIDLSWDIIARFGKQK--AMPREFFMDFVKVAQDKGRHFTLLAAQLEELARGLNVLPTAISRFRN-- 108 (189)
Q Consensus 33 aalLHaiAHIEl~AIdLA~Dai~RF~~~~--~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~elARGLDv~P~~i~k~~~-- 108 (189)
..+|=...+.|++|....+-...=|. .. ++| .|-.=+.+-+.+|-.|...+.++|.. ||-.++..-|++...
T Consensus 5 ~~~Ln~qi~~El~as~~Yl~ma~~~~-~~~~~l~-g~a~~f~~~s~eE~~HA~~l~~yi~~--rgg~~~l~~i~~~~~~~ 80 (160)
T cd00904 5 EAAVNRQLNLELYASYTYLSMATYFD-RDDVALK-GVAHFFKEQAQEEREHAEKFYKYQNE--RGGRVELQDIEKPPSDE 80 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc-cccccch-hHHHHHHHHHHHHHHHHHHHHHHHHH--CCCccccCcCCCCcccc
Confidence 45677778999999998775544453 22 454 34444456799999999999999986 565555444444332
Q ss_pred CCCHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHcC
Q 041347 109 GGDNETAELLERVVYREEITHCAARVRWFRYLCLRSG 145 (189)
Q Consensus 109 ~GD~~sa~iLe~iI~~DEI~HVa~G~rWF~~lC~~~g 145 (189)
.++. .++++ ..+.-|.. |....+=+..+|.+.+
T Consensus 81 ~~~~--~e~~e-~al~~Ek~-v~~~i~~l~~~A~~~~ 113 (160)
T cd00904 81 WGGT--LDAME-AALKLEKF-VNQALLDLHELASEEK 113 (160)
T ss_pred cCCH--HHHHH-HHHHHHHH-HHHHHHHHHHHHHHCC
Confidence 2332 45777 46777765 7777777777777765
No 60
>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]
Probab=43.63 E-value=42 Score=29.38 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 041347 70 DFVKVAQDKGRHFTLLAAQLEEL 92 (189)
Q Consensus 70 Dwl~VA~DEarHF~LL~~rL~el 92 (189)
-.-+.+.+|.-|..+.++||.++
T Consensus 75 ~l~em~d~E~~HL~~f~~~l~e~ 97 (204)
T COG2941 75 QLKEMADEEIDHLAWFEQRLLEL 97 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 55678889999999999999999
No 61
>smart00674 CENPB Putative DNA-binding domain in centromere protein B, mouse jerky and transposases.
Probab=41.81 E-value=1e+02 Score=20.52 Aligned_cols=44 Identities=20% Similarity=0.290 Sum_probs=32.8
Q ss_pred HccCCCcHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHcCCC
Q 041347 93 ARGLNVLPTAISRFRNGGDNETAELLERVVYREEITHCAARVRWFRYLCLRSGYP 147 (189)
Q Consensus 93 ARGLDv~P~~i~k~~~~GD~~sa~iLe~iI~~DEI~HVa~G~rWF~~lC~~~g~~ 147 (189)
.+|+-+|+.+|.... ..|... .. ++.-.+|..|+...+++.++.
T Consensus 20 ~~g~~it~~~i~~~A-------~~i~~~--~~--~~~f~~s~~Wl~rF~~Rh~~~ 63 (66)
T smart00674 20 ALGIPISGEQIREKA-------LEILQR--LG--LENFKASNGWLTRFKKRHNIV 63 (66)
T ss_pred HCCCCCCHHHHHHHH-------HHHHHH--cC--CCCCCCCHHHHHHHHHHcCCc
Confidence 889999999988653 334442 22 346789999999999998874
No 62
>PLN00179 acyl- [acyl-carrier protein] desaturase
Probab=41.27 E-value=99 Score=29.52 Aligned_cols=83 Identities=22% Similarity=0.238 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHHHHHH----------------HccCCCc----HHH------------------HHHHH-cCCCHHHH
Q 041347 75 AQDKGRHFTLLAAQLEEL----------------ARGLNVL----PTA------------------ISRFR-NGGDNETA 115 (189)
Q Consensus 75 A~DEarHF~LL~~rL~el----------------ARGLDv~----P~~------------------i~k~~-~~GD~~sa 115 (189)
..||-||=-+|++.|.-- ++|.|.. |-. ..|+. +.||..-+
T Consensus 165 TAEENRHgdlL~~YLylTgrVDm~~iE~t~q~li~~G~d~~~~~~py~~~vYtSFQErAT~VSH~NTarlA~~~gDp~la 244 (390)
T PLN00179 165 TAEENRHGDLLNKYLYLSGRVDMRQIEKTIQYLIGSGMDPKTENNPYLGFIYTSFQERATFISHGNTARLAKEHGDAKLA 244 (390)
T ss_pred ccccchHHHHHHHHHhhccCcCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCChHHH
Confidence 468999999999876533 7888863 311 22343 36798889
Q ss_pred HHHHHhhhhhhhhhHHhhhHHHHHHHHHcCCCCCccCccccccccccCCCCCcchhhHHHHHHHHHHHh
Q 041347 116 ELLERVVYREEITHCAARVRWFRYLCLRSGYPTLLQDSLAPLESEAGENGCTTEENEEFIQNFRAMVRT 184 (189)
Q Consensus 116 ~iLe~iI~~DEI~HVa~G~rWF~~lC~~~g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~lv~~ 184 (189)
+|+. +|-.||-.|-.+=.+ .+.+-..+||. ..+.+|..+++.
T Consensus 245 ~icg-~IAaDE~rHe~fY~~---iV~~~le~dPd-----------------------~tm~Aiadmm~~ 286 (390)
T PLN00179 245 KICG-TIAADEKRHETAYTR---IVEKLFEIDPD-----------------------GAVLAFADMMRK 286 (390)
T ss_pred HHHH-HHhccHHHHHHHHHH---HHHHHHhhCcc-----------------------HHHHHHHHHHHh
Confidence 9999 699999999886333 23334566762 237888888876
No 63
>COG1592 Rubrerythrin [Energy production and conversion]
Probab=41.09 E-value=85 Score=26.45 Aligned_cols=86 Identities=20% Similarity=0.189 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHH-------------------HccCCCcHHHH
Q 041347 43 ESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEEL-------------------ARGLNVLPTAI 103 (189)
Q Consensus 43 El~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~el-------------------ARGLDv~P~~i 103 (189)
|..|+...+ +..+-....+.|. --.=+.++|.+|..|-..+.+.|.++ -.--+--|.+.
T Consensus 16 Es~a~~rY~-~~A~~A~~eG~~~-va~lfr~iA~~E~~HA~~~~~~l~~~~~~~~~~~eNl~~aieGE~~e~~emyp~~a 93 (166)
T COG1592 16 ESMAVMRYL-IFAKVAEEEGYPE-IARLFRAIAEAEAVHAKNHLKLLGKLLLVLGDTRENLEEAIEGETYEITEMYPVFA 93 (166)
T ss_pred hHHHHHHHH-HHHHHHHHCCCHH-HHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHccchHHHHHhChHHH
Confidence 556665432 1222222234553 12235589999999988887777752 34456678888
Q ss_pred HHHHcCCCHHHHHHHHHhhhhhhhhhHH
Q 041347 104 SRFRNGGDNETAELLERVVYREEITHCA 131 (189)
Q Consensus 104 ~k~~~~GD~~sa~iLe~iI~~DEI~HVa 131 (189)
..-+.-|+.+.+.-++ .+..+|..|-.
T Consensus 94 e~A~~~g~~~~a~~f~-~~~~~Ek~H~~ 120 (166)
T COG1592 94 EVAEEEGFKEAARSFR-AAAKAEKRHAE 120 (166)
T ss_pred HHHHHcCcHHHHHHHH-HHHHHHHHHHH
Confidence 8888888888888888 68899999954
No 64
>PRK01076 L-rhamnose isomerase; Provisional
Probab=36.24 E-value=1.3e+02 Score=28.92 Aligned_cols=52 Identities=23% Similarity=0.358 Sum_probs=41.2
Q ss_pred HHHccCCCcHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHcCCCC
Q 041347 91 ELARGLNVLPTAISRFRNGGDNETAELLERVVYREEITHCAARVRWFRYLCLRSGYPT 148 (189)
Q Consensus 91 elARGLDv~P~~i~k~~~~GD~~sa~iLe~iI~~DEI~HVa~G~rWF~~lC~~~g~~p 148 (189)
.+++.|=+-....++++..||.-+ +..+.||..=.-+|.-| .|.|.+.+.+.
T Consensus 348 All~ALL~p~~~L~~~q~~gD~~~-----rla~~ee~k~~p~g~vw-d~~c~~~~vp~ 399 (419)
T PRK01076 348 ALLRALLEPTDQLRKLELEGDYTA-----RLALLEEQKSLPWGAVW-DMYCQRHDVPV 399 (419)
T ss_pred HHHHHHcCCHHHHHHHHHcCCHHH-----HHHHHHHHhcCChHHHH-HHHHHhcCCCC
Confidence 336777777788889999998644 34566899999999999 78899999965
No 65
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=34.44 E-value=1e+02 Score=28.62 Aligned_cols=30 Identities=23% Similarity=0.431 Sum_probs=26.0
Q ss_pred HHHHHHHHhhhhhhhhhHHhhhHHHHHHHHH
Q 041347 113 ETAELLERVVYREEITHCAARVRWFRYLCLR 143 (189)
Q Consensus 113 ~sa~iLe~iI~~DEI~HVa~G~rWF~~lC~~ 143 (189)
.++++++ -|.+||.-|+.+|..=|+.+++.
T Consensus 270 g~~~~i~-~I~RDE~lH~~~~~~l~~~l~~e 299 (410)
T PRK12759 270 GMGKVVE-WSIRDESMHVEGNAALFRIYCQE 299 (410)
T ss_pred eHHHHHH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3467888 69999999999999999999974
No 66
>PF06175 MiaE: tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE); InterPro: IPR010386 This family consists of several bacterial tRNA-(MSIO[6]A)-hydroxylase (MiaE) proteins. The modified nucleoside 2-methylthio-N-6-isopentenyl adenosine (ms2i6A) is present at position 37 (3' of the anticodon) of tRNAs that read codons beginning with U except tRNA(I,V Ser) in Escherichia coli. Salmonella typhimurium 2-methylthio-cis-ribozeatin (ms2io6A) is found in tRNA, probably in the corresponding species that have ms2i6A in E. coli. The miaE gene is absent in E. coli, a finding consistent with the absence of the hydroxylated derivative of ms2i6A in this species [].; PDB: 2ITB_B.
Probab=34.32 E-value=2.8e+02 Score=24.92 Aligned_cols=69 Identities=19% Similarity=0.315 Sum_probs=45.7
Q ss_pred hhhHHHHHHHHHhHHHHHHHHHHHHHhhcCCCC-----CCC----------------------------------hhHHH
Q 041347 29 LQNRQAIVHSLAHTESWAIDLSWDIIARFGKQK-----AMP----------------------------------REFFM 69 (189)
Q Consensus 29 ~~~RaalLHaiAHIEl~AIdLA~Dai~RF~~~~-----~lP----------------------------------~~Fy~ 69 (189)
+++-..+|-.=||-|.-|---|.-.+.||.... =++ .+...
T Consensus 25 ~~nl~~lL~DHa~CE~KAA~tAm~li~rY~~~~~~~~~ll~~~~py~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~eLv~ 104 (240)
T PF06175_consen 25 PANLPTLLIDHANCEKKAAQTAMSLIRRYAVDKESGQALLAWLKPYEDFVYRKDGDIQKNQLSKSLQPKSHYPEKEELVD 104 (240)
T ss_dssp TH--HHHHHHHHHHHHHHHHHHHHHHHHTT---------------------------------------------HHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHH
Confidence 456677888889999988888877789996211 011 23445
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHccCCCc
Q 041347 70 DFVKVAQDKGRHFTLLAAQLEELARGLNVL 99 (189)
Q Consensus 70 Dwl~VA~DEarHF~LL~~rL~elARGLDv~ 99 (189)
..+.+|.||-.||.++.+.|.+ ||+...
T Consensus 105 ~Ms~LarEEL~HFeqVl~im~~--RGi~l~ 132 (240)
T PF06175_consen 105 KMSRLAREELHHFEQVLEIMKK--RGIPLG 132 (240)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH--TT----
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--cCCCCC
Confidence 5678999999999999998885 555443
No 67
>TIGR01748 rhaA L-rhamnose isomerase. This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, including E. coli, this is the first step in rhamnose catabolism. Sequential steps are catalyzed by rhamnulose kinase (rhaB), then rhamnulose-1-phosphate aldolase (rhaD) to yield glycerone phosphate and (S)-lactaldehyde. Characterization of this family is based on members in E. coli and Salmonella.
Probab=33.87 E-value=1.6e+02 Score=28.41 Aligned_cols=50 Identities=24% Similarity=0.419 Sum_probs=39.2
Q ss_pred HccCCCcHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHcCCCC
Q 041347 93 ARGLNVLPTAISRFRNGGDNETAELLERVVYREEITHCAARVRWFRYLCLRSGYPT 148 (189)
Q Consensus 93 ARGLDv~P~~i~k~~~~GD~~sa~iLe~iI~~DEI~HVa~G~rWF~~lC~~~g~~p 148 (189)
++.|=+-....++++..||.-+ +..+.||..-.-+|.-| .|.|.+.+.+.
T Consensus 346 l~ALL~p~~~L~~~q~~gD~~~-----rla~~ee~k~~p~gavw-~~~c~~~~vp~ 395 (414)
T TIGR01748 346 LRALLEPTAELKKLEAEGDYTA-----RLALLEEQKSLPFGAVW-EMYCERHGVPV 395 (414)
T ss_pred HHHHcCCHHHHHHHHHcCCHHH-----HHHHHHHHhcCChHHHH-HHHHHHcCCCC
Confidence 6666677777788888888543 34567899999999999 67899999975
No 68
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=33.01 E-value=71 Score=29.63 Aligned_cols=64 Identities=23% Similarity=0.272 Sum_probs=43.0
Q ss_pred HHhHHH-HHHHHHHHHHHHHHHHHHH----------------HccCCCc----HH------------------HHHHHH-
Q 041347 68 FMDFVK-VAQDKGRHFTLLAAQLEEL----------------ARGLNVL----PT------------------AISRFR- 107 (189)
Q Consensus 68 y~Dwl~-VA~DEarHF~LL~~rL~el----------------ARGLDv~----P~------------------~i~k~~- 107 (189)
..-|+. =..||-||-.+|++.|.-- ..|.|.. |. -..|+.
T Consensus 100 W~~wv~~WTAEEnRHg~~L~~YL~vsg~vDp~~lE~~r~~~i~~G~~~~~~~~p~~~~vYtsfQE~AT~vsh~n~~~~a~ 179 (330)
T PF03405_consen 100 WGRWVGRWTAEENRHGDALRDYLYVSGRVDPVALERTRMYLITAGFDPGFESDPYLGFVYTSFQERATQVSHRNTGRLAK 179 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCTSS-CCCCCHCCHHHHHH----S-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcccccccccccHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334443 3789999999999998532 5555433 21 012333
Q ss_pred cCCCHHHHHHHHHhhhhhhhhhHHh
Q 041347 108 NGGDNETAELLERVVYREEITHCAA 132 (189)
Q Consensus 108 ~~GD~~sa~iLe~iI~~DEI~HVa~ 132 (189)
+.||..-++||. .|-.||..|-.+
T Consensus 180 ~~~DpvL~~il~-~IA~DE~rH~~f 203 (330)
T PF03405_consen 180 QAGDPVLAQILG-RIAADEARHEAF 203 (330)
T ss_dssp HTTSHHHHHHHH-HHHHHHHHHHHH
T ss_pred hcCChHHHHHHH-HHHhhHHHHHHH
Confidence 559999999999 599999999876
No 69
>PRK13965 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=32.40 E-value=1.1e+02 Score=27.76 Aligned_cols=35 Identities=11% Similarity=0.234 Sum_probs=24.5
Q ss_pred HcCCCH-HHHHHHHHhhhhhhhhhHHhhhHHHHHHHH
Q 041347 107 RNGGDN-ETAELLERVVYREEITHCAARVRWFRYLCL 142 (189)
Q Consensus 107 ~~~GD~-~sa~iLe~iI~~DEI~HVa~G~rWF~~lC~ 142 (189)
+..|-. .++++++ .|.+||.-|+.+|..=|+.+..
T Consensus 189 ~~~gkM~g~~~~i~-~I~RDE~lH~~~~~~l~~~~~~ 224 (335)
T PRK13965 189 SARGKLPNTSDIIR-LILRDKVIHNYYSGYKYQQKVA 224 (335)
T ss_pred hhcCCCccHHHHHH-HHHHhHHHHHHHHHHHHHHHHh
Confidence 333443 4567888 6999999999987776655443
No 70
>COG2733 Predicted membrane protein [Function unknown]
Probab=31.44 E-value=2e+02 Score=27.77 Aligned_cols=40 Identities=25% Similarity=0.203 Sum_probs=26.8
Q ss_pred HHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 041347 51 WDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEEL 92 (189)
Q Consensus 51 ~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~el 92 (189)
+|.+.|= +.+.|+++||+ |+.--.+--+|=-=+.+|++++
T Consensus 242 ~D~v~~~-p~h~~rk~~~R-~~~~~i~~L~~Dp~~~~r~e~i 281 (415)
T COG2733 242 LDEVRRD-PDHKMRKDFDR-FLFDLIDDLYHDPGMAARAEAI 281 (415)
T ss_pred HHHHHhC-cCccchHHHHH-HHHHHHHHHhcCHHHHHHHHHH
Confidence 4566673 34679999999 7776666666665555555555
No 71
>PF03405 FA_desaturase_2: Fatty acid desaturase; InterPro: IPR005067 Fatty acid desaturases are enzymes that catalyze the insertion of a double bond at the delta position of fatty acids. There seem to be two distinct families of fatty acid desaturases which do not seem to be evolutionary related. Family 1 is composed of: - Stearoyl-CoA desaturase (SCD) (1.14.19.1 from EC) []. Family 2 is composed of: - Bacterial fatty acid desaturases. - Plant stearoyl-acyl-carrier-protein desaturase (1.14.19.1 from EC) [], this enzyme catalyzes the introduction of a double bond at the delta(9) position of steraoyl-ACP to produce oleoyl-ACP. This enzyme is responsible for the conversion of saturated fatty acids to unsaturated fatty acids in the synthesis of vegetable oils. - Cyanobacterial DesA [], an enzyme that can introduce a second cis double bond at the delta(12) position of fatty acid bound to membranes glycerolipids. DesA is involved in chilling tolerance; the phase transition temperature of lipids of cellular membranes being dependent on the degree of unsaturation of fatty acids of the membrane lipids. This entry contains fatty acid desaturases belonging to Family 2. ; GO: 0045300 acyl-[acyl-carrier-protein] desaturase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 1OQ7_B 1AFR_A 2XZ0_B 1OQB_A 2J2F_E 1OQ4_B 1OQ9_A 2XZ1_A 1ZA0_A.
Probab=30.17 E-value=59 Score=30.15 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 041347 72 VKVAQDKGRHFTLLAAQLEEL 92 (189)
Q Consensus 72 l~VA~DEarHF~LL~~rL~el 92 (189)
-++|.||++|+..+.+-++++
T Consensus 191 ~~IA~DE~rH~~fy~~iv~~~ 211 (330)
T PF03405_consen 191 GRIAADEARHEAFYRNIVEAY 211 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHH
Confidence 378999999999999998776
No 72
>PF03221 HTH_Tnp_Tc5: Tc5 transposase DNA-binding domain; InterPro: IPR006600 This entry represents a DNA-binding helix-turn-helix domain found in the pogo family of transposable elements, the centromere protein Cenp-B, and yeast PCD2. There is extensive sequence similarity between Cenp-B and transposase proteins encoded by the pogo superfamily of transposable elements, which includes the human Tigger and Jerky elements []. The HTH domain is composed of three alpha-helices, with the second and third helices connected via a turn comprise the helix-turn-helix motif. Helix 3 is termed the recognition helix as it binds the DNA major groove, as in other HTHs []. This conserved DNA-binding domain is found in the following proteins: Cenp-B (major centromere autoantigen B or centromere protein B), which appears to organise arrays of centromere satellite DNA into a higher order structure that then direct centromere formation and kinetochore assembly in mammalian chromosomes. The N terminus of Cenp-B contains two DNA-binding HTH domains, which bind to adjacent major grooves of DNA: a psq-type HTH domain followed by a CenpB-type HTH domain, which together bind specifically to the Cenp-B box, which occurs in alpha-satellite DNA in human centromeres []. Pogo family transposable elements includes both Tigger and Jerky elements []. Pogo contains two open reading frames flanked by inverted repeats. The N-terminal region of pogo transposase contains a Cenp-B-type HTH DNA-binding domain []. Mammalian jerky protein, involved in epileptic seizures in mice []. PDC2 (Pyruvate DeCarboxylase 2), which is a transcription factor required for the synthesis of the glycolytic enzyme pyruvate decarboxylase, required for high level expression of both the THI and the PDC genes. PDC2 may be important for a high basal level of PDC gene expression or play a positive role in the autoregulation control of PDC1 and PDC5 [, ]. ; PDB: 1HLV_A 1IUF_A.
Probab=29.49 E-value=1.1e+02 Score=19.94 Aligned_cols=46 Identities=20% Similarity=0.255 Sum_probs=24.9
Q ss_pred HccCCCcHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhHHhhhHHHHHHHHHcCC
Q 041347 93 ARGLNVLPTAISRFRNGGDNETAELLERVVYREEITHCAARVRWFRYLCLRSGY 146 (189)
Q Consensus 93 ARGLDv~P~~i~k~~~~GD~~sa~iLe~iI~~DEI~HVa~G~rWF~~lC~~~g~ 146 (189)
.+|..+|..+|.... ..|.+ .-......--.+|..|+...+++.++
T Consensus 17 ~~g~~vt~~~i~~~A-------~~i~~-~~~~~~~~~~~~s~~W~~~F~~Rh~i 62 (66)
T PF03221_consen 17 RKGFPVTREMIREKA-------KEIAE-LAKSPGPPEFKASKGWLDRFKKRHGI 62 (66)
T ss_dssp GCT---SCHHHHHHH-------HHHHH--SCCCT-TT-S--CHHHHHHHHHTS-
T ss_pred HcCCCCCHHHHHHHH-------HHHHH-hhcccccCcCCcccHHHHHHHHHcCC
Confidence 677777777776543 22222 12445567788999999999998876
No 73
>PF13838 Clathrin_H_link: Clathrin-H-link; PDB: 2XZG_A 3GD1_I 1BPO_C 1C9I_B 1C9L_A.
Probab=28.04 E-value=96 Score=22.44 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=15.0
Q ss_pred HccCCCcHHHHHHHHcCCCH
Q 041347 93 ARGLNVLPTAISRFRNGGDN 112 (189)
Q Consensus 93 ARGLDv~P~~i~k~~~~GD~ 112 (189)
-||+==||.+|+||++++..
T Consensus 33 P~giLRt~~Ti~rFk~~p~~ 52 (66)
T PF13838_consen 33 PRGILRTPETINRFKQVPAQ 52 (66)
T ss_dssp GGGTT-SHHHHHHHHTS---
T ss_pred ccchhcCHHHHHHHHcCCCC
Confidence 58999999999999998865
No 74
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=26.51 E-value=1.4e+02 Score=31.26 Aligned_cols=95 Identities=18% Similarity=0.083 Sum_probs=56.6
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHH----------H-----c---cCCCcHH-
Q 041347 41 HTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEEL----------A-----R---GLNVLPT- 101 (189)
Q Consensus 41 HIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~el----------A-----R---GLDv~P~- 101 (189)
.+|..+-+-.-.+.-+.. -.+-.+=|.+.|.+|.+|...+.+++... . . ..+-++.
T Consensus 870 ~mE~~g~~FY~~~A~~a~-----~~~~K~lF~~LA~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 944 (1006)
T PRK12775 870 EIELGGMAFYARAAKETS-----DPVLKELFLKFAGMEQEHMATLARRYHAAAPSPTEGFKIERAAIMAGVKGRPDDPGN 944 (1006)
T ss_pred HHHHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccchhhhhhhhccccCCHHH
Confidence 566666665554444442 12233334467899999999998887742 0 0 1111221
Q ss_pred ---------------HHHHHHcCCCHH-HHHHHHHhhhhhhhhhHHhhhHHHHHHH
Q 041347 102 ---------------AISRFRNGGDNE-TAELLERVVYREEITHCAARVRWFRYLC 141 (189)
Q Consensus 102 ---------------~i~k~~~~GD~~-sa~iLe~iI~~DEI~HVa~G~rWF~~lC 141 (189)
+.+..+...|.+ ..++++ .|-.+|-+|++.=.+=+..+.
T Consensus 945 al~lAm~~Ekdai~fY~~la~~~~d~e~~k~l~~-~LA~EEk~Hl~~L~~~~d~~~ 999 (1006)
T PRK12775 945 LFRIAIEFERRAVKFFKERVAETPDGSVERQLYK-ELAAEEREHVALLTTEFERWK 999 (1006)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 223344566764 578898 489999999977555555544
No 75
>COG3294 HD supefamily hydrolase [General function prediction only]
Probab=25.97 E-value=1.2e+02 Score=27.54 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=28.8
Q ss_pred hHHHHHHHHH------hHHHHHHHHHHHHHhhcCCCCCCChhHHHhH
Q 041347 31 NRQAIVHSLA------HTESWAIDLSWDIIARFGKQKAMPREFFMDF 71 (189)
Q Consensus 31 ~RaalLHaiA------HIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dw 71 (189)
--+++||.|- |+|+.-+=||+|++-|- | ..||.||
T Consensus 101 lLga~LHDIGnsVHRd~H~~~sa~La~~IldrI-----L-~kiy~~~ 141 (269)
T COG3294 101 LLGAYLHDIGNSVHRDDHELYSAVLALDILDRI-----L-SKIYPDP 141 (269)
T ss_pred HHHHHHHhccchhccccHHHHhHHHhHHHHHHH-----h-hhhcCCH
Confidence 3578899996 48999999999999887 3 4689998
No 76
>PRK13967 nrdF1 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=25.48 E-value=79 Score=28.50 Aligned_cols=108 Identities=16% Similarity=0.096 Sum_probs=60.4
Q ss_pred CChhhHHHHHHHHHhH---HHHHH-HHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHHHc--------
Q 041347 27 NGLQNRQAIVHSLAHT---ESWAI-DLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEELAR-------- 94 (189)
Q Consensus 27 ~s~~~RaalLHaiAHI---El~AI-dLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~elAR-------- 94 (189)
.+..-|-.+.|.++=. +..-. ++........ .-|.+ ..=....+..|+.|-+.+.--|..|..
T Consensus 51 Lt~~Er~~i~~~l~~lt~lDs~q~~~~~~~~~~~~----~~~e~-~~~l~~~~~~E~iHs~sYs~il~tl~~~~~~~~~f 125 (322)
T PRK13967 51 LSSTEQQTTIRVFTGLTLLDTAQATVGAVAMIDDA----VTPHE-EAVLTNMAFMESVHAKSYSSIFSTLCSTKQIDDAF 125 (322)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhc----CCHHH-HHHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHH
Confidence 4778888888888753 31111 1111112222 22322 222347789999999998888887710
Q ss_pred -cCCCcHHHHHHH-------------------------------------HcCCCH-HHHHHHHHhhhhhhhhhHHhhhH
Q 041347 95 -GLNVLPTAISRF-------------------------------------RNGGDN-ETAELLERVVYREEITHCAARVR 135 (189)
Q Consensus 95 -GLDv~P~~i~k~-------------------------------------~~~GD~-~sa~iLe~iI~~DEI~HVa~G~r 135 (189)
-.+-.|.+.+|. .+.|-. .++++++ .|.+||.-|+.+|..
T Consensus 126 ~~~~~~~~l~~K~~~i~~~~~~~~~~~~~v~~~~lEgi~FysgF~~~~~l~~~g~m~g~~~~i~-~I~RDE~~H~~~~~~ 204 (322)
T PRK13967 126 DWSEQNPYLQRKAQIIVDYYRGDDALKRKASSVMLESFLFYSGFYLPMYWSSRGKLTNTADLIR-LIIRDEAVHGYYIGY 204 (322)
T ss_pred HHHhcCHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCccHHHHHH-HHHHHHHHHHHHHHH
Confidence 011223333222 222322 3466787 699999999997664
Q ss_pred -HHHHH
Q 041347 136 -WFRYL 140 (189)
Q Consensus 136 -WF~~l 140 (189)
+++.+
T Consensus 205 ~~~~~~ 210 (322)
T PRK13967 205 KCQRGL 210 (322)
T ss_pred HHHHHh
Confidence 65665
No 77
>TIGR02029 AcsF magnesium-protoporphyrin IX monomethyl ester aerobic oxidative cyclase. This model respresents the oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under aerobic conditions. This enzyme is believed to utilize a binuclear iron center and molecular oxygen. There are two isoforms of this enzyme in some plants and cyanobacterai which are differentially regulated based on the levels of copper and oxygen. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under aerobic conditions (a separate enzyme, BchE, acts under anaerobic conditions). This enzyme is found in plants, cyanobacteria and other photosynthetic bacteria.
Probab=24.51 E-value=54 Score=30.69 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCCc
Q 041347 72 VKVAQDKGRHFTLLAAQLEELARGLNVL 99 (189)
Q Consensus 72 l~VA~DEarHF~LL~~rL~elARGLDv~ 99 (189)
-=.|.|||||.--|++-|.+.+=+||.+
T Consensus 111 ~~MaRDEARHAGFlNkam~df~l~lDLg 138 (337)
T TIGR02029 111 QLMARDEARHAGFLNKALGDFGLALDLG 138 (337)
T ss_pred HHHhhhhHHHhhhHHHHHHHcCcccchh
Confidence 3468899999999999999987777754
No 78
>PHA01976 helix-turn-helix protein
Probab=24.28 E-value=1.2e+02 Score=20.04 Aligned_cols=30 Identities=23% Similarity=0.180 Sum_probs=21.7
Q ss_pred HHHHccCCCcHHHHHHHHcCCCHHHHHHHH
Q 041347 90 EELARGLNVLPTAISRFRNGGDNETAELLE 119 (189)
Q Consensus 90 ~elARGLDv~P~~i~k~~~~GD~~sa~iLe 119 (189)
.++|+-+++++.++.++++..-.-+.+.+.
T Consensus 19 ~~lA~~~gvs~~~v~~~e~g~~~p~~~~l~ 48 (67)
T PHA01976 19 PELSRRAGVRHSLIYDFEADKRLPNLKTLL 48 (67)
T ss_pred HHHHHHhCCCHHHHHHHHcCCCCCCHHHHH
Confidence 345999999999999999866544444443
No 79
>PF06777 DUF1227: Protein of unknown function (DUF1227); InterPro: IPR010643 This domain represents a conserved region within a number of eukaryotic DNA repair helicases.; GO: 0005634 nucleus
Probab=24.19 E-value=62 Score=26.79 Aligned_cols=38 Identities=16% Similarity=0.258 Sum_probs=35.2
Q ss_pred CCChhHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCCc
Q 041347 62 AMPREFFMDFVKVAQDKGRHFTLLAAQLEELARGLNVL 99 (189)
Q Consensus 62 ~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~elARGLDv~ 99 (189)
.-|.+|..+.-+...=|.++++.+.+||..|-|.|.++
T Consensus 85 e~P~sFL~~~~~~~~id~k~LrFc~eRL~sLl~TLei~ 122 (146)
T PF06777_consen 85 ESPLSFLQHLKDETFIDRKPLRFCSERLSSLLRTLEIT 122 (146)
T ss_pred cCHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHCCC
Confidence 57999999999999999999999999999998888765
No 80
>CHL00185 ycf59 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=23.69 E-value=58 Score=30.62 Aligned_cols=29 Identities=21% Similarity=0.448 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCc
Q 041347 71 FVKVAQDKGRHFTLLAAQLEELARGLNVL 99 (189)
Q Consensus 71 wl~VA~DEarHF~LL~~rL~elARGLDv~ 99 (189)
+-=.|.|||||.--|++-|.+..=+||.+
T Consensus 116 F~lMaRDEARHAGFlNkam~df~l~lDLg 144 (351)
T CHL00185 116 FLLMSRDEARHAGFLNKAMSDFNLSLDLG 144 (351)
T ss_pred HHHHhhhhHHHhhhHHHHHHHcCccccch
Confidence 34468899999999999999987777754
No 81
>cd01047 ACSF Aerobic Cyclase System Fe-containing subunit (ACSF), ferritin-like diiron-binding domain. Aerobic Cyclase System, Fe-containing subunit (ACSF) is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Rubrivivax gelatinosus acsF codes for a conserved, putative binuclear iron-cluster-containing protein involved in aerobic oxidative cyclization of Mg-protoporphyrin IX monomethyl ester. AcsF and homologs have a leucine zipper and two copies of the conserved glutamate and histidine residues predicted to act as ligands for iron in the Ex(29-35)DExRH motifs. Several homologs of AcsF are found in a wide range of photosynthetic organisms, including Chlamydomonas reinhardtii Crd1 and Pharbitis nil PNZIP, suggesting that this aerobic oxidative cyclization mechanism is conserved from bacteria to plants.
Probab=23.67 E-value=57 Score=30.36 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHccCCCc
Q 041347 70 DFVKVAQDKGRHFTLLAAQLEELARGLNVL 99 (189)
Q Consensus 70 Dwl~VA~DEarHF~LL~~rL~elARGLDv~ 99 (189)
-+-=.|.|||||.--|++-|.+.+=+||.+
T Consensus 99 ~F~lMaRDEARHAGFlNkam~df~l~lDLg 128 (323)
T cd01047 99 LFRLMARDEARHAGFLNKALSDFNLALDLG 128 (323)
T ss_pred HHHHHhhhHHHHhhhHHHHHHHcCcccchh
Confidence 344578999999999999999987777754
No 82
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=23.56 E-value=60 Score=30.60 Aligned_cols=27 Identities=22% Similarity=0.411 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCc
Q 041347 73 KVAQDKGRHFTLLAAQLEELARGLNVL 99 (189)
Q Consensus 73 ~VA~DEarHF~LL~~rL~elARGLDv~ 99 (189)
=.|.|||||.--|++-|.+.+=+||.+
T Consensus 122 lMaRDEARHAGFlNkam~df~l~lDLg 148 (355)
T PRK13654 122 LMARDEARHAGFLNKAMKDFGLSLDLG 148 (355)
T ss_pred HHhhhHHHHhhhHHHHHHHcCccccch
Confidence 367899999999999999987777754
No 83
>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=23.28 E-value=1.5e+02 Score=23.62 Aligned_cols=84 Identities=17% Similarity=0.270 Sum_probs=55.4
Q ss_pred CCChhHHHhHHHHHHHHHHHHHHHHHHHHHH-Hc---cCC---CcHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhHHhhh
Q 041347 62 AMPREFFMDFVKVAQDKGRHFTLLAAQLEEL-AR---GLN---VLPTAISRFRNGGDNETAELLERVVYREEITHCAARV 134 (189)
Q Consensus 62 ~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~el-AR---GLD---v~P~~i~k~~~~GD~~sa~iLe~iI~~DEI~HVa~G~ 134 (189)
..+.+.+.++...-..+.+.+.-..+-|.++ .+ |+= .++....+++..| -....+.|+..+++++.+==.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~l~ilTNg~~~~~~~~l~~~g---l~~~Fd~v~~s~~~g~~KP~~ 157 (229)
T COG1011 81 DEDAELVEELLAALAKLLPDYPEALEALKELGKKYKLGILTNGARPHQERKLRQLG---LLDYFDAVFISEDVGVAKPDP 157 (229)
T ss_pred cccHHHHHHHHHHHHhhCccChhHHHHHHHHHhhccEEEEeCCChHHHHHHHHHcC---ChhhhheEEEecccccCCCCc
Confidence 3445566666655222355566666666665 22 222 4456777888877 234555678889999777678
Q ss_pred HHHHHHHHHcCCCC
Q 041347 135 RWFRYLCLRSGYPT 148 (189)
Q Consensus 135 rWF~~lC~~~g~~p 148 (189)
+=|.++|++.|++|
T Consensus 158 ~~f~~~~~~~g~~p 171 (229)
T COG1011 158 EIFEYALEKLGVPP 171 (229)
T ss_pred HHHHHHHHHcCCCc
Confidence 99999999999987
No 84
>PTZ00211 ribonucleoside-diphosphate reductase small subunit; Provisional
Probab=23.28 E-value=85 Score=28.23 Aligned_cols=29 Identities=17% Similarity=0.021 Sum_probs=23.9
Q ss_pred HHHHHHHHhhhhhhhhhHHhhhHHHHHHHH
Q 041347 113 ETAELLERVVYREEITHCAARVRWFRYLCL 142 (189)
Q Consensus 113 ~sa~iLe~iI~~DEI~HVa~G~rWF~~lC~ 142 (189)
.++++++ .|.+||.-|+.+|..=++.+.+
T Consensus 195 g~~~~i~-~I~RDE~~H~~f~~~l~~~l~~ 223 (330)
T PTZ00211 195 GLTFSNE-LISRDEGLHTDFACLLYSHLKN 223 (330)
T ss_pred chHHHHH-HHHhhHHHHHHHHHHHHHHHhc
Confidence 3466787 6999999999999888888874
No 85
>smart00530 HTH_XRE Helix-turn-helix XRE-family like proteins.
Probab=23.28 E-value=1.1e+02 Score=17.57 Aligned_cols=31 Identities=39% Similarity=0.500 Sum_probs=22.3
Q ss_pred HHHHHccCCCcHHHHHHHHcCCCHHHHHHHH
Q 041347 89 LEELARGLNVLPTAISRFRNGGDNETAELLE 119 (189)
Q Consensus 89 L~elARGLDv~P~~i~k~~~~GD~~sa~iLe 119 (189)
..++|+.+.+++..+.++.+.+...+...+.
T Consensus 13 ~~~la~~~~i~~~~i~~~~~~~~~~~~~~~~ 43 (56)
T smart00530 13 QEELAEKLGVSRSTLSRIENGKRKPSLETLK 43 (56)
T ss_pred HHHHHHHhCCCHHHHHHHHCCCCCCCHHHHH
Confidence 3456888999999999998876444444444
No 86
>PF05569 Peptidase_M56: BlaR1 peptidase M56; InterPro: IPR008756 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M56 (clan M-). The predicted active site residues for members of this family occur in the motif HEXXH. The type example is BlaR1 peptidase from Bacillus licheniformis. Production of beta-Lactamase and penicillin-binding protein 2a (which mediate staphylococcal resistance to beta-lactam antibiotics) is regulated by a signal-transducing integral membrane protein and a transcriptional repressor. The signal transducer is a fusion protein with penicillin-binding and zinc metalloprotease domains. The signal for protein expression is transmitted by site-specific proteolytic cleavage of both the transducer, which auto-activates, and the repressor, which is inactivated, unblocking gene transcription.
Probab=23.15 E-value=74 Score=27.52 Aligned_cols=28 Identities=21% Similarity=0.310 Sum_probs=23.1
Q ss_pred HHHHHHHhhhhhhhhhHHhhhHHHHHHHH
Q 041347 114 TAELLERVVYREEITHCAARVRWFRYLCL 142 (189)
Q Consensus 114 sa~iLe~iI~~DEI~HVa~G~rWF~~lC~ 142 (189)
+.+-++ .|+.-|..|++-|+-|+++++.
T Consensus 192 ~~~el~-~il~HEl~Hikr~D~~~~~l~~ 219 (299)
T PF05569_consen 192 SEEELR-AILLHELAHIKRRDLLWKLLAE 219 (299)
T ss_pred CHHHHH-HHHHHHHHHHHCCChHHHHHHH
Confidence 455666 5888999999999999988875
No 87
>PLN02492 ribonucleoside-diphosphate reductase
Probab=23.15 E-value=93 Score=27.86 Aligned_cols=112 Identities=21% Similarity=0.184 Sum_probs=63.2
Q ss_pred CChhhHHHHHHHHHhHHHHHHHH--HHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHHHc----------
Q 041347 27 NGLQNRQAIVHSLAHTESWAIDL--SWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEELAR---------- 94 (189)
Q Consensus 27 ~s~~~RaalLHaiAHIEl~AIdL--A~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~elAR---------- 94 (189)
.|..-|..+.+.++-. .+.|. +-+....|...-..| +...=....+..|+.|-..+..-+..+..
T Consensus 50 Lt~~Er~~~~~il~~~--~~~D~~v~~~~~~~~~~~~~~~-E~~~~~~~q~~~E~iH~~sYs~i~~tl~~d~~~~~~~f~ 126 (324)
T PLN02492 50 LTDDERHFISHVLAFF--AASDGIVLENLAARFMKEVQVP-EARAFYGFQIAIENIHSEMYSLLLDTYIKDPKEKDRLFN 126 (324)
T ss_pred CCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4777888888888753 34442 111112332111122 22333345677889998888766665510
Q ss_pred cCCCcHHHHHH--------------------------------------HHcCCCH-HHHHHHHHhhhhhhhhhHHhhhH
Q 041347 95 GLNVLPTAISR--------------------------------------FRNGGDN-ETAELLERVVYREEITHCAARVR 135 (189)
Q Consensus 95 GLDv~P~~i~k--------------------------------------~~~~GD~-~sa~iLe~iI~~DEI~HVa~G~r 135 (189)
-..-.|.+.+| |+..|-. .++++++ .|.+||.-|+.+|..
T Consensus 127 ~~~~~p~l~~K~~~~~~~~~~~~~~~~~lva~~~lEgi~F~sgF~~~~~l~~~g~m~g~~~~i~-~I~RDE~~H~~~~~~ 205 (324)
T PLN02492 127 AIETIPCVAKKADWALRWIDSSASFAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNE-LISRDEGLHCDFACL 205 (324)
T ss_pred HHHhCHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHhhhhhHHHHHHHHHcCCCcchHHHHH-HHHhhHHHHHHHHHH
Confidence 01122323322 2233333 3466787 699999999999988
Q ss_pred HHHHHHH
Q 041347 136 WFRYLCL 142 (189)
Q Consensus 136 WF~~lC~ 142 (189)
=++.+.+
T Consensus 206 l~~~l~~ 212 (324)
T PLN02492 206 LYSLLKN 212 (324)
T ss_pred HHHHHHh
Confidence 7887773
No 88
>PRK13966 nrdF2 ribonucleotide-diphosphate reductase subunit beta; Provisional
Probab=22.10 E-value=2.5e+02 Score=25.36 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=20.6
Q ss_pred HHHHHHHHhhhhhhhhhHHhhhHHHHH
Q 041347 113 ETAELLERVVYREEITHCAARVRWFRY 139 (189)
Q Consensus 113 ~sa~iLe~iI~~DEI~HVa~G~rWF~~ 139 (189)
.++++++ .|.+||.-|+.+|..=|+.
T Consensus 185 g~~~~i~-~I~RDE~lH~~f~~~l~~~ 210 (324)
T PRK13966 185 NTADMIR-LIIRDEAVHGYYIGYKFQR 210 (324)
T ss_pred cHHHHHH-HHHHhHHHHHHHHHHHHHH
Confidence 4677888 6999999999988655553
No 89
>PF12652 CotJB: CotJB protein; InterPro: IPR024207 The cotJ operon proteins affect spore coat composition, and is controlled by sigma E. The genes, which include CotJB, are either required for the normal formation of the inner layers of the coat or are themselves structural components of the coat []. CotJB has been identified as a spore coat protein [].
Probab=21.47 E-value=92 Score=23.08 Aligned_cols=20 Identities=15% Similarity=0.346 Sum_probs=17.6
Q ss_pred HHHHHHHHHhHHHHHHHHHH
Q 041347 32 RQAIVHSLAHTESWAIDLSW 51 (189)
Q Consensus 32 RaalLHaiAHIEl~AIdLA~ 51 (189)
|..||+.|.-++|.++||++
T Consensus 1 r~~LL~~I~~~~Fa~~dl~L 20 (78)
T PF12652_consen 1 REELLREIQEVSFAVVDLNL 20 (78)
T ss_pred CHHHHHHHHHHhhHHHHHHH
Confidence 56799999999999999864
No 90
>PF09079 Cdc6_C: CDC6, C terminal ; InterPro: IPR015163 The C-terminal domain of CDC6 assumes a winged helix fold, with a five alpha-helical bundle (alpha15-alpha19) structure, backed on one side by three beta strands (beta6-beta8). It has been shown that this domain acts as a DNA-localisation factor, however its exact function is, as yet, unknown. Putative functions include: (1) mediation of protein-protein interactions and (2) regulation of nucleotide binding and hydrolysis. Mutagenesis studies have shown that this domain is essential for appropriate Cdc6 activity []. ; PDB: 2QBY_A 2V1U_A 1W5T_A 1W5S_B 1FNN_B.
Probab=21.40 E-value=1.2e+02 Score=21.48 Aligned_cols=14 Identities=29% Similarity=0.477 Sum_probs=9.0
Q ss_pred HHHHHHHcCCCCCc
Q 041347 137 FRYLCLRSGYPTLL 150 (189)
Q Consensus 137 F~~lC~~~g~~p~~ 150 (189)
++.+|+..|.+|+.
T Consensus 25 Y~~lc~~~~~~pls 38 (85)
T PF09079_consen 25 YEELCESLGVDPLS 38 (85)
T ss_dssp HHHHHHHTTS----
T ss_pred HHHHHHHcCCCCCC
Confidence 57899999999955
No 91
>PRK01759 glnD PII uridylyl-transferase; Provisional
Probab=20.42 E-value=6.5e+02 Score=25.92 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=51.4
Q ss_pred hHHHHHHHHH------hHHHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCC-cHHHH
Q 041347 31 NRQAIVHSLA------HTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQLEELARGLNV-LPTAI 103 (189)
Q Consensus 31 ~RaalLHaiA------HIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~rL~elARGLDv-~P~~i 103 (189)
--++|+|.|+ |=|..| .+|-..+-|+ ++|.+..+.-..... .|..|. .+|.-=|. +|..|
T Consensus 477 ~lAaLlHDIGKG~~~dHs~~Ga-~~a~~i~~rl----~l~~~~~~~v~~LV~---~Hl~ms-----~~Aqr~Di~dp~~i 543 (854)
T PRK01759 477 YIAALFHDIAKGRGGDHAELGA-VDMRQFAQQH----GFDQREIETMAWLVQ---QHLLMS-----VTAQRRDIHDPEVV 543 (854)
T ss_pred HHHHHHHhhcCCCCCChhHHHH-HHHHHHHHHc----CCCHHHHHHHHHHHH---HhhHHH-----HHHhccCCCCHHHH
Confidence 4688999997 555555 5666778888 599888776554443 454432 34544565 89999
Q ss_pred HHH-HcCCCHHHHHHHH
Q 041347 104 SRF-RNGGDNETAELLE 119 (189)
Q Consensus 104 ~k~-~~~GD~~sa~iLe 119 (189)
.+| ...|+.+..+.|-
T Consensus 544 ~~fa~~vg~~~~L~~L~ 560 (854)
T PRK01759 544 MNFAEEVQNQVRLDYLT 560 (854)
T ss_pred HHHHHHhCCHhhhHHHH
Confidence 999 7788877666554
No 92
>PF13699 DUF4157: Domain of unknown function (DUF4157)
Probab=20.20 E-value=63 Score=23.53 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=16.4
Q ss_pred CChhhHHHHHHHHHhHHHH
Q 041347 27 NGLQNRQAIVHSLAHTESW 45 (189)
Q Consensus 27 ~s~~~RaalLHaiAHIEl~ 45 (189)
.+..++..|-|.++|+-.+
T Consensus 57 ~s~~~~~llaHEl~Hv~Qq 75 (79)
T PF13699_consen 57 DSPEGRALLAHELAHVVQQ 75 (79)
T ss_pred CCCCcchhHhHHHHHHHhh
Confidence 4778999999999999765
No 93
>COG0208 NrdF Ribonucleotide reductase, beta subunit [Nucleotide transport and metabolism]
Probab=20.17 E-value=1.3e+02 Score=27.90 Aligned_cols=29 Identities=24% Similarity=0.256 Sum_probs=21.5
Q ss_pred HHHHHHHHhhhhhhhhhHHhhhHHHHHHHH
Q 041347 113 ETAELLERVVYREEITHCAARVRWFRYLCL 142 (189)
Q Consensus 113 ~sa~iLe~iI~~DEI~HVa~G~rWF~~lC~ 142 (189)
-+++|++ .|.+||..|+.+|..=|+.+-+
T Consensus 209 g~a~iir-lI~RDE~~H~~~~~~l~~~~~~ 237 (348)
T COG0208 209 GTAEIIR-LIIRDEALHLYFIGYLIQRLVA 237 (348)
T ss_pred CHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 5688998 7999999999876554444433
No 94
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=20.12 E-value=59 Score=30.61 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCc
Q 041347 73 KVAQDKGRHFTLLAAQLEELARGLNVL 99 (189)
Q Consensus 73 ~VA~DEarHF~LL~~rL~elARGLDv~ 99 (189)
=.|.|||||.--|++-|.+..=+||.+
T Consensus 118 lMaRDEARHAGFlNkam~Df~l~lDLg 144 (357)
T PLN02508 118 LMSRDEARHAGFLNKALSDFNLALDLG 144 (357)
T ss_pred HhCchhHHHHhHHHHHHHHcCccccch
Confidence 468899999999999999987777754
No 95
>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []. The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....
Probab=20.06 E-value=3.4e+02 Score=19.49 Aligned_cols=53 Identities=19% Similarity=0.178 Sum_probs=36.0
Q ss_pred hHHHHHHHHHhHHHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHHHHHHHHHHHH
Q 041347 31 NRQAIVHSLAHTESWAIDLSWDIIARFGKQKAMPREFFMDFVKVAQDKGRHFTLLAAQ 88 (189)
Q Consensus 31 ~RaalLHaiAHIEl~AIdLA~Dai~RF~~~~~lP~~Fy~Dwl~VA~DEarHF~LL~~r 88 (189)
+-...+-.-...|-.+++..-..+-.++ -| +-..=+-+++.||.+|..+|.+.
T Consensus 84 ~~~~~l~~a~~~E~~~~~~Y~~~a~~~~----~~-~~~~~~~~l~~~E~~H~~~l~~l 136 (137)
T PF02915_consen 84 NLEEALEMAIKEEKDAYEFYAELARKAP----DP-EIRKLFEELAKEEKEHEDLLEKL 136 (137)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHTT----SH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC----CH-HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444455556888889888776665553 22 22333667999999999999864
Done!