BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041357
(169 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P60027|TF2H4_PANTR General transcription factor IIH subunit 4 OS=Pan troglodytes
GN=GTF2H4 PE=3 SV=1
Length = 462
Score = 116 bits (291), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 94/155 (60%), Gaps = 6/155 (3%)
Query: 20 GFVVVETNFKMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITTEQ- 78
GF+VVETN+++YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GIT +Q
Sbjct: 305 GFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQI 364
Query: 79 -----QNAHPRVADKIPSVPKNVCDQIRLWESDLNRVETTPAHYYDEFPSRDVFEAACDY 133
AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE +
Sbjct: 365 IHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAH 424
Query: 134 ARDQSGLLWEDSKKMRLVVNAEIHMHMREFLRGQN 168
AR+ L++E+S K +VV H ++ F + Q
Sbjct: 425 ARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 459
>sp|Q92759|TF2H4_HUMAN General transcription factor IIH subunit 4 OS=Homo sapiens
GN=GTF2H4 PE=2 SV=1
Length = 462
Score = 116 bits (291), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 94/155 (60%), Gaps = 6/155 (3%)
Query: 20 GFVVVETNFKMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITTEQ- 78
GF+VVETN+++YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GIT +Q
Sbjct: 305 GFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQI 364
Query: 79 -----QNAHPRVADKIPSVPKNVCDQIRLWESDLNRVETTPAHYYDEFPSRDVFEAACDY 133
AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE +
Sbjct: 365 IHFLRTRAHPVMLKQTPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAH 424
Query: 134 ARDQSGLLWEDSKKMRLVVNAEIHMHMREFLRGQN 168
AR+ L++E+S K +VV H ++ F + Q
Sbjct: 425 ARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 459
>sp|P87303|TFB2_SCHPO RNA polymerase II transcription factor B subunit 2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=tfb2 PE=1 SV=2
Length = 447
Score = 115 bits (289), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 54/155 (34%), Positives = 90/155 (58%), Gaps = 6/155 (3%)
Query: 17 DNCGFVVVETNFKMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITT 76
D+ GF++VETN+++YAY++S L I+ LF+ + + NL+VG IT++S+ A NGI
Sbjct: 288 DDKGFIIVETNYRLYAYTSSPLQIAIIGLFANLRARFSNLVVGVITRDSIRRALMNGIAA 347
Query: 77 EQ------QNAHPRVADKIPSVPKNVCDQIRLWESDLNRVETTPAHYYDEFPSRDVFEAA 130
EQ +AHP++ +P +P + DQI LWE + NR+ TP + +F + F+ A
Sbjct: 348 EQIITYLTTHAHPQMRSNVPLLPPTLVDQIYLWELEKNRLRATPGILFRDFLTDSGFDQA 407
Query: 131 CDYARDQSGLLWEDSKKMRLVVNAEIHMHMREFLR 165
+YA++ L+W+ S K + M +L+
Sbjct: 408 VEYAKELGVLVWDSSLKRMFFITTTGAQPMIAYLK 442
>sp|O70422|TF2H4_MOUSE General transcription factor IIH subunit 4 OS=Mus musculus
GN=Gtf2h4 PE=2 SV=1
Length = 463
Score = 115 bits (287), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 94/155 (60%), Gaps = 6/155 (3%)
Query: 20 GFVVVETNFKMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITTEQ- 78
GF+VVETN+++YAY+ S+L ++ LFS++ Y+ PN++V +T+ES+ A +GIT +Q
Sbjct: 306 GFIVVETNYRLYAYTESELQIALIALFSEMLYRFPNMVVAQVTRESVQQAIASGITAQQI 365
Query: 79 -----QNAHPRVADKIPSVPKNVCDQIRLWESDLNRVETTPAHYYDEFPSRDVFEAACDY 133
AHP + + P +P + DQIRLWE + +R+ T Y++F S+ FE +
Sbjct: 366 IHFLRTRAHPVMLKQNPVLPPTITDQIRLWELERDRLRFTEGVLYNQFLSQVDFELLLAH 425
Query: 134 ARDQSGLLWEDSKKMRLVVNAEIHMHMREFLRGQN 168
AR+ L++E+S K +VV H ++ F + Q
Sbjct: 426 ARELGVLVFENSAKRLMVVTPAGHSDVKRFWKRQK 460
>sp|Q6CLR2|TFB2_KLULA RNA polymerase II transcription factor B subunit 2 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=TFB2 PE=3 SV=1
Length = 496
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 59/170 (34%), Positives = 92/170 (54%), Gaps = 24/170 (14%)
Query: 20 GFVVVETNFKMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITTEQ- 78
G +++ETNFK+Y+YS S L IL LF ++ + N++ G +T+ES+ NA NGIT EQ
Sbjct: 322 GALIIETNFKLYSYSNSPLQIAILSLFVHLKSRFANMVTGQLTRESVRNALLNGITAEQI 381
Query: 79 -----QNAHPR------------------VADKIPSVPKNVCDQIRLWESDLNRVETTPA 115
+AHPR V + + +P V DQIRLW+ +L+R+ +
Sbjct: 382 IAYLETHAHPRMRRLAEENLSKKLELDPTVKETLQVLPPTVVDQIRLWQLELDRIISYDG 441
Query: 116 HYYDEFPSRDVFEAACDYARDQSGLLWEDSKKMRLVVNAEIHMHMREFLR 165
+ Y +F S ++ DYA+D LLW++ KK V+ E + + +F R
Sbjct: 442 YLYTDFESYQEYQTVADYAKDIGVLLWQNEKKKMFFVSTEGNSQVLDFHR 491
>sp|Q6BZX4|TFB2_YARLI RNA polymerase II transcription factor B subunit 2 OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=TFB2 PE=3 SV=1
Length = 467
Score = 110 bits (276), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 52/162 (32%), Positives = 94/162 (58%), Gaps = 6/162 (3%)
Query: 14 TIADNCGFVVVETNFKMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENG 73
++A + GF+++ETNF++YAY+ S L +L LF ++ + N++ G I ++S+ A NG
Sbjct: 299 SVAADSGFIILETNFRLYAYTESPLQIAVLNLFVNLKTRFANMVTGQINRDSVRFALSNG 358
Query: 74 ITTEQ------QNAHPRVADKIPSVPKNVCDQIRLWESDLNRVETTPAHYYDEFPSRDVF 127
IT EQ +AHPR+ +P V DQI+LW+ +++R+ T + + EF + D +
Sbjct: 359 ITAEQIITYLSVHAHPRMKGMEHVLPPTVVDQIKLWQLEMDRIRATDGYLFSEFKNFDEY 418
Query: 128 EAACDYARDQSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 169
+ YA++ LL+E+ K + V + EF++ +N+
Sbjct: 419 KDVSTYAKELGVLLYENPGKRKFVSTLAGSQQIVEFVKRRNQ 460
>sp|Q54C29|TF2H4_DICDI General transcription factor IIH subunit 4 OS=Dictyostelium
discoideum GN=gtf2h4 PE=3 SV=1
Length = 483
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 58/152 (38%), Positives = 92/152 (60%), Gaps = 6/152 (3%)
Query: 20 GFVVVETNFKMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITTEQ- 78
G++V+ETN+++YAY++S L +L LF K+ Y+LPNL VG IT+ES+ A +GIT +Q
Sbjct: 328 GYIVLETNYRLYAYTSSSLQISLLSLFVKMLYRLPNLAVGIITRESIRTALIHGITADQI 387
Query: 79 -----QNAHPRVADKIPSVPKNVCDQIRLWESDLNRVETTPAHYYDEFPSRDVFEAACDY 133
N+HP A+ +P V +QI LWE++ NR+ T + Y+ FP+ D + A +
Sbjct: 388 IDFVRHNSHPNAANSGQPIPDVVAEQILLWEAERNRITYTKSVLYNSFPTNDCYIATLKF 447
Query: 134 ARDQSGLLWEDSKKMRLVVNAEIHMHMREFLR 165
A++Q +W LVV E + +R F++
Sbjct: 448 AKEQDYYIWSHDPLKTLVVKEEGNDPIRNFIK 479
>sp|Q6FP41|TFB2_CANGA RNA polymerase II transcription factor B subunit 2 OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=TFB2 PE=3 SV=1
Length = 504
Score = 106 bits (265), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 58/174 (33%), Positives = 92/174 (52%), Gaps = 24/174 (13%)
Query: 20 GFVVVETNFKMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITTEQ- 78
G +++ETNFK+Y+Y S L IL LF ++ + N++ G IT+ES+ A NGIT +Q
Sbjct: 327 GALIIETNFKLYSYCNSPLQIAILSLFVHLKSRFANMVAGQITRESIRRALINGITADQV 386
Query: 79 -----QNAHPRV------------------ADKIPSVPKNVCDQIRLWESDLNRVETTPA 115
+AHP++ D + +P V DQI+LW+ +L+RV T
Sbjct: 387 IAYLESHAHPQMRRLAEEKLQKKLELDPNCKDPLQVLPPTVVDQIKLWQLELDRVLTYEG 446
Query: 116 HYYDEFPSRDVFEAACDYARDQSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 169
Y +F + F C YA+D LLW+D +K +L V+ E + + E+ + + K
Sbjct: 447 SLYIDFDTAQDFNMLCKYAQDIGALLWKDDRKRKLFVSREGNAQVLEYAKRKIK 500
>sp|Q75B51|TFB2_ASHGO RNA polymerase II transcription factor B subunit 2 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=TFB2 PE=3 SV=1
Length = 514
Score = 103 bits (258), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 60/173 (34%), Positives = 90/173 (52%), Gaps = 29/173 (16%)
Query: 20 GFVVVETNFKMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITTEQ- 78
G ++VETNFK+Y+YS S L IL LF ++ + N++ G IT+ES+ A NGIT +Q
Sbjct: 339 GALIVETNFKLYSYSNSPLQIAILSLFIHLKTRFQNMVTGQITRESIRRALHNGITADQI 398
Query: 79 -----QNAHP---RVA---------------DKIPSVPKNVCDQIRLWESDLNRVETTPA 115
+AHP R+A D + +P V DQI+LW+ +L+R+ +
Sbjct: 399 IAYMETHAHPQMRRLAGDNLEKKLELDPNCRDTLQVLPPTVVDQIKLWQLELDRIISYDG 458
Query: 116 HYYDEFPSRDVFEAACDYARDQSGLLWEDSKKMRLVVNAE-----IHMHMREF 163
+ + +F + ++ YARD LLW D KK V+ E I H R+F
Sbjct: 459 YLFRDFDNLQEYQVLAQYARDIGVLLWSDDKKKMFFVSKEGNAQVIDFHKRKF 511
>sp|Q6BGW8|TFB2_DEBHA RNA polymerase II transcription factor B subunit 2 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=TFB2 PE=3 SV=2
Length = 515
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/185 (29%), Positives = 85/185 (45%), Gaps = 47/185 (25%)
Query: 18 NCGFVVVETNFKMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITTE 77
N G +++ETNFK+YAY+ S L IL LF ++ + N++ G IT+ES+ NA NGIT +
Sbjct: 316 NQGTIILETNFKIYAYTNSPLEIAILNLFVHLKTRFSNMVCGQITRESIRNALYNGITAD 375
Query: 78 Q-----------------------------------------------QNAHPRVADKIP 90
Q +N K+
Sbjct: 376 QIIKFLETHAHSQMKILAKERLDKKIEFDTSNNINTAGGAPQSQMMTNENGTTVAQHKLE 435
Query: 91 SVPKNVCDQIRLWESDLNRVETTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDSKKMRL 150
+P V DQI+LW+ +L+R++T + + +F S+ FEA +YA + LLW + KM+
Sbjct: 436 VLPPTVVDQIKLWQLELDRIQTFEGYLFKDFASQQEFEALSNYASEIGVLLWSNKSKMKF 495
Query: 151 VVNAE 155
V +
Sbjct: 496 FVTKD 500
>sp|Q02939|TFB2_YEAST RNA polymerase II transcription factor B subunit 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TFB2 PE=1
SV=1
Length = 513
Score = 93.6 bits (231), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 55/170 (32%), Positives = 90/170 (52%), Gaps = 24/170 (14%)
Query: 20 GFVVVETNFKMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITTEQ- 78
G ++VETNFK+Y+YS S L +L LF ++ + N+++G IT+ES+ A NGIT +Q
Sbjct: 337 GSLIVETNFKIYSYSNSPLQIAVLSLFVHLKARFVNMVLGQITRESIRRALTNGITADQI 396
Query: 79 -----QNAHPRV------------------ADKIPSVPKNVCDQIRLWESDLNRVETTPA 115
+AHP++ + + +P V DQIRLW+ +L+RV T
Sbjct: 397 IAYLETHAHPQMRRLAEEKLEKKLELDPNCKEPLQVLPPTVVDQIRLWQLELDRVITYEG 456
Query: 116 HYYDEFPSRDVFEAACDYARDQSGLLWEDSKKMRLVVNAEIHMHMREFLR 165
Y +F + + YA+D LLW+D KK + ++ E + + +F +
Sbjct: 457 SLYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKEGNSQVLDFAK 506
>sp|A9BHA8|EFG_PETMO Elongation factor G OS=Petrotoga mobilis (strain DSM 10674 / SJ95)
GN=fusA PE=3 SV=1
Length = 695
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 33 YSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITTEQQN----AHPRVADK 88
Y KL E L L S+ E++ + IVG + A ENG+ Q+ +P VA +
Sbjct: 507 YGHVKLRVEPLPLNSEKEFEFVDKIVGGVIPREYIPAIENGVKESMQDGVLLGYPMVAIR 566
Query: 89 I 89
+
Sbjct: 567 V 567
>sp|Q9SHM1|ALMT6_ARATH Aluminum-activated malate transporter 6 OS=Arabidopsis thaliana
GN=ALMT6 PE=3 SV=1
Length = 538
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 21/99 (21%)
Query: 7 KESWFIPTIADNCGFVVVETNFKMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESL 66
+E+W P+++ G VV ET +K+Y ++S L + +L NL+
Sbjct: 447 RETW--PSVSFIGGSVVNETVYKVYESASSLSLATFASLLIEFVARLENLV--------- 495
Query: 67 YNAFENGITTEQQNAHPRVADKIPSVPKNVCDQIRLWES 105
NAFE ++T+ AD VP NV DQ LW +
Sbjct: 496 -NAFEE-LSTK--------ADFRDPVPLNVVDQEGLWTT 524
>sp|C6HBY6|ATP25_AJECH ATPase synthesis protein 25, mitochondrial OS=Ajellomyces capsulata
(strain H143) GN=ATP25 PE=3 SV=1
Length = 732
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 6/60 (10%)
Query: 53 LPNLIVGAITKESLYNAFENGITTEQQNAHPRVADKIPSVPKNVCDQIRLWESDLNRVET 112
L L VG + +Y E + P + ++IP VP N CD ++ +S L RV+T
Sbjct: 531 LVKLFVGVSFRAQVYPVKEKDLPNS-----PVIGNRIP-VPLNTCDAVKRVQSRLTRVKT 584
>sp|Q04GY8|ADDB_OENOB ATP-dependent helicase/deoxyribonuclease subunit B OS=Oenococcus
oeni (strain ATCC BAA-331 / PSU-1) GN=rexB PE=3 SV=1
Length = 1161
Score = 30.0 bits (66), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 14/96 (14%)
Query: 29 KMYAYSTSKLHCEILRLFSK---IEYQLPNLIVGAITKESLYNAFENGITTEQQNAHPRV 85
++ YS S+L + + + I Q +++VG + +E + E+ N R
Sbjct: 70 RLQVYSLSRLAWALTKERDQKTIISNQSVSILVGQVLRE---------LPIEKLNIFARS 120
Query: 86 ADKIPSVPKNVCDQI-RLWESDLNRVETTPAHYYDE 120
A ++P NV +Q+ +W S L E P H +D+
Sbjct: 121 A-RMPGFVANVAEQLLEIWRSGLTASEILPLHQFDD 155
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 62,540,237
Number of Sequences: 539616
Number of extensions: 2449355
Number of successful extensions: 5172
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 5146
Number of HSP's gapped (non-prelim): 21
length of query: 169
length of database: 191,569,459
effective HSP length: 109
effective length of query: 60
effective length of database: 132,751,315
effective search space: 7965078900
effective search space used: 7965078900
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)