Query 041357
Match_columns 169
No_of_seqs 107 out of 176
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 10:24:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041357.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041357hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dom_A RNA polymerase II trans 100.0 1.1E-37 3.8E-42 236.0 6.4 89 81-169 17-105 (108)
2 3dgp_A RNA polymerase II trans 100.0 1.4E-35 4.6E-40 214.3 6.9 76 94-169 2-77 (80)
3 2d4z_A Chloride channel protei 39.5 25 0.00086 28.4 3.7 34 41-74 210-248 (250)
4 3lab_A Putative KDPG (2-keto-3 31.7 32 0.0011 28.0 3.1 125 19-165 37-178 (217)
5 4e38_A Keto-hydroxyglutarate-a 31.3 34 0.0012 27.9 3.2 124 20-165 59-193 (232)
6 3oco_A Hemolysin-like protein 28.4 93 0.0032 21.7 4.8 45 31-76 97-147 (153)
7 2gjf_A Designed protein; proca 27.7 1.2E+02 0.004 19.7 4.9 46 122-167 17-68 (78)
8 3hf7_A Uncharacterized CBS-dom 27.7 37 0.0012 23.4 2.5 44 31-75 81-130 (130)
9 1pbj_A Hypothetical protein; s 26.7 27 0.00092 23.3 1.5 22 54-75 40-61 (125)
10 3k2v_A Putative D-arabinose 5- 26.1 27 0.00092 24.5 1.5 43 32-75 43-91 (149)
11 1yht_A DSPB; beta barrel, hydr 23.3 40 0.0014 28.9 2.3 22 120-141 90-111 (367)
12 3s4e_A Dual specificity protei 23.0 25 0.00086 25.1 0.8 49 61-109 92-144 (144)
13 1vjq_A Designed protein; struc 23.0 1E+02 0.0034 20.0 3.9 46 122-167 9-60 (79)
14 3lhh_A CBS domain protein; str 22.9 1.3E+02 0.0044 21.7 4.8 46 30-76 117-168 (172)
15 3jtf_A Magnesium and cobalt ef 21.5 94 0.0032 21.0 3.6 44 30-74 79-128 (129)
16 2yl5_A Beta-N-acetylhexosamini 20.5 54 0.0019 28.8 2.6 23 119-141 89-111 (442)
No 1
>3dom_A RNA polymerase II transcription factor B subunit; protein-protein complex, heterodimer, beta-alpha-beta split, strand addition; 2.60A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-37 Score=236.04 Aligned_cols=89 Identities=30% Similarity=0.595 Sum_probs=72.3
Q ss_pred cChhhhhcCCCCChhHHHHHHHHHHhcCceeecCceeecCCCCHHHHHHHHHHHHHcCeEEeecCCccEEEEecccchHH
Q 041357 81 AHPRVADKIPSVPKNVCDQIRLWESDLNRVETTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDSKKMRLVVNAEIHMHM 160 (169)
Q Consensus 81 aHp~m~~~~p~iP~tV~dQIrLWE~Er~Rl~~~~g~ly~~f~s~~~f~~~~~yA~~~g~llw~~~~kr~~~V~~~~h~~v 160 (169)
..|++....|+|||||+|||||||.|||||++++||||++|.|+++|+.+++||+++|+|||+|+.+|+|||+.+||++|
T Consensus 17 ~~~~~~~~~p~lPpTVvDQIrLWE~ErnRl~~~~G~LY~dF~s~~efe~v~~yA~e~gvLlW~d~~kr~~~Vs~egh~~v 96 (108)
T 3dom_A 17 LDPNCKEPLQVLPPTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKEGNSQV 96 (108)
T ss_dssp ---------------CCCHHHHHHHHHTTCEEEEEEEEECCSCHHHHHHHHHHHHHHTCEEEEEGGGTEEEEEGGGHHHH
T ss_pred cCcccccCCCCCCCcHHHHHHHHHHhhCceeccceEEEecCCCHHHHHHHHHHHHHcCeEEEecCCccEEEEeccchHHH
Confidence 34555555899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccC
Q 041357 161 REFLRGQNK 169 (169)
Q Consensus 161 r~f~k~~~~ 169 (169)
++|||++++
T Consensus 97 k~f~Kr~~~ 105 (108)
T 3dom_A 97 LDFAKRKLK 105 (108)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHh
Confidence 999999874
No 2
>3dgp_A RNA polymerase II transcription factor B subunit; protein-protein complex, beta-alpha-beta spilt, heterodimer, damage, DNA excision; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-35 Score=214.29 Aligned_cols=76 Identities=33% Similarity=0.610 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHHhcCceeecCceeecCCCCHHHHHHHHHHHHHcCeEEeecCCccEEEEecccchHHHHHHhhccC
Q 041357 94 KNVCDQIRLWESDLNRVETTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDSKKMRLVVNAEIHMHMREFLRGQNK 169 (169)
Q Consensus 94 ~tV~dQIrLWE~Er~Rl~~~~g~ly~~f~s~~~f~~~~~yA~~~g~llw~~~~kr~~~V~~~~h~~vr~f~k~~~~ 169 (169)
|||+|||||||+|||||++++|+||++|+|+++|+++++||+++|+|||+|+.+|+|||+.+||++|++|||++++
T Consensus 2 pTV~DQIrLWe~ErnRl~~~~g~Ly~~F~s~~efe~~~~yA~e~gvLlW~~~~kr~~~V~~~gh~~vk~f~k~~~~ 77 (80)
T 3dgp_A 2 PTVVDQIRLWQLELDRVITYEGSLYSDFETSQEYNLLSKYAQDIGVLLWKDDKKKKFFISKEGNSQVLDFAKRKLK 77 (80)
T ss_dssp ------------CGGGCEEEEEEEEECCSCHHHHHHHHHHHHHTTCEEEEETTTTEEEEEGGGHHHHHHHHTTC--
T ss_pred CchHHHHHHHHHhhCceeccceEEEecCCCHHHHHHHHHHHHHcCeEEEecCCccEEEEeccchHHHHHHHHHHHh
Confidence 7999999999999999999999999999999999999999999999999999999999999999999999999874
No 3
>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1
Probab=39.52 E-value=25 Score=28.43 Aligned_cols=34 Identities=21% Similarity=0.284 Sum_probs=25.8
Q ss_pred HHHHHHHhhhhcc-----CceEEEEeCHHHHHHHHHcCC
Q 041357 41 EILRLFSKIEYQL-----PNLIVGAITKESLYNAFENGI 74 (169)
Q Consensus 41 aiL~lF~~l~~r~-----PNlvvg~iTR~Sv~~Al~~GI 74 (169)
.+..||..+-.+- -|-+||+|||.-+.+|+..-.
T Consensus 210 ~v~~LF~~lglr~l~V~~~GrLVGIVTrkDl~kai~~~~ 248 (250)
T 2d4z_A 210 KTHTLFSLLGLDRAYVTSMGKLVGVVALAEIQAAIEGSY 248 (250)
T ss_dssp HHHHHHHHHTCSEEEEEETTEEEEEEEHHHHHHHHHC--
T ss_pred HHHHHHHHhCCeEEEEEECCEEEEEEEHHHHHHHHHHHh
Confidence 5678888887543 356899999999999997543
No 4
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=31.71 E-value=32 Score=27.95 Aligned_cols=125 Identities=16% Similarity=0.242 Sum_probs=75.8
Q ss_pred CceEEEEeCceEEEEcCCHhHHHHHHHHHhhhhccCceEEE---EeCHHHHHHHHHcCCCccc-cccChhhhh-----cC
Q 041357 19 CGFVVVETNFKMYAYSTSKLHCEILRLFSKIEYQLPNLIVG---AITKESLYNAFENGITTEQ-QNAHPRVAD-----KI 89 (169)
Q Consensus 19 ~g~IIvETNfRvYAYT~S~LqiaiL~lF~~l~~r~PNlvvg---~iTR~Sv~~Al~~GITA~Q-~~aHp~m~~-----~~ 89 (169)
.|.=++|.-+| +|-.++.+ ..+..+||+++|| ++|.+.++.|.+.|-.-== -+..|.+.+ ..
T Consensus 37 gGi~~iEvt~~------t~~a~~~I---~~l~~~~p~~~IGAGTVlt~~~a~~ai~AGA~fivsP~~~~evi~~~~~~~v 107 (217)
T 3lab_A 37 GGVHLLEVTLR------TEAGLAAI---SAIKKAVPEAIVGAGTVCTADDFQKAIDAGAQFIVSPGLTPELIEKAKQVKL 107 (217)
T ss_dssp TTCCEEEEETT------STTHHHHH---HHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHH
T ss_pred cCCCEEEEeCC------CccHHHHH---HHHHHHCCCCeEeeccccCHHHHHHHHHcCCCEEEeCCCcHHHHHHHHHcCC
Confidence 36667787666 55555444 4556788999997 7999999999999843211 223333322 23
Q ss_pred ------CCCCh--hHHHHHHHHHHhcCceeecCceeecCCCCHHHHHHHHHHHHHcCeEEeecCCccEEEEecccchHHH
Q 041357 90 ------PSVPK--NVCDQIRLWESDLNRVETTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDSKKMRLVVNAEIHMHMR 161 (169)
Q Consensus 90 ------p~iP~--tV~dQIrLWE~Er~Rl~~~~g~ly~~f~s~~~f~~~~~yA~~~g~llw~~~~kr~~~V~~~~h~~vr 161 (169)
|++|- |..+=.+.|+.=-+-+++.++-.+ . - .+|.+++...+ +.-+++.+..=.-+++.
T Consensus 108 ~~~~~~~~~PG~~TptE~~~A~~~Gad~vK~FPa~~~---g---G----~~~lkal~~p~---p~i~~~ptGGI~~~N~~ 174 (217)
T 3lab_A 108 DGQWQGVFLPGVATASEVMIAAQAGITQLKCFPASAI---G---G----AKLLKAWSGPF---PDIQFCPTGGISKDNYK 174 (217)
T ss_dssp HCSCCCEEEEEECSHHHHHHHHHTTCCEEEETTTTTT---T---H----HHHHHHHHTTC---TTCEEEEBSSCCTTTHH
T ss_pred CccCCCeEeCCCCCHHHHHHHHHcCCCEEEECccccc---c---C----HHHHHHHHhhh---cCceEEEeCCCCHHHHH
Confidence 66775 666666788888888888764211 0 0 24444444333 33455554444456788
Q ss_pred HHHh
Q 041357 162 EFLR 165 (169)
Q Consensus 162 ~f~k 165 (169)
+|++
T Consensus 175 ~~l~ 178 (217)
T 3lab_A 175 EYLG 178 (217)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 5
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=31.35 E-value=34 Score=27.93 Aligned_cols=124 Identities=18% Similarity=0.226 Sum_probs=70.9
Q ss_pred ceEEEEeCceEEEEcCCHhHHHHHHHHHhhhhccCceEEE---EeCHHHHHHHHHcCCCccc-cccChhhhh-----cCC
Q 041357 20 GFVVVETNFKMYAYSTSKLHCEILRLFSKIEYQLPNLIVG---AITKESLYNAFENGITTEQ-QNAHPRVAD-----KIP 90 (169)
Q Consensus 20 g~IIvETNfRvYAYT~S~LqiaiL~lF~~l~~r~PNlvvg---~iTR~Sv~~Al~~GITA~Q-~~aHp~m~~-----~~p 90 (169)
|.-.+|.-+| +|-.. ..+.++..++|++++| ++|-+.++.|++.|-.-=- -+..|.+.+ ..|
T Consensus 59 Gi~~iEvt~~------t~~a~---e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~AGA~fIvsP~~~~~vi~~~~~~gi~ 129 (232)
T 4e38_A 59 GLPAAEITFR------SDAAV---EAIRLLRQAQPEMLIGAGTILNGEQALAAKEAGATFVVSPGFNPNTVRACQEIGID 129 (232)
T ss_dssp TCCEEEEETT------STTHH---HHHHHHHHHCTTCEEEEECCCSHHHHHHHHHHTCSEEECSSCCHHHHHHHHHHTCE
T ss_pred CCCEEEEeCC------CCCHH---HHHHHHHHhCCCCEEeECCcCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHcCCC
Confidence 5556666555 44433 4455566788999998 7999999999999853211 112222211 235
Q ss_pred CCCh--hHHHHHHHHHHhcCceeecCceeecCCCCHHHHHHHHHHHHHcCeEEeecCCccEEEEecccchHHHHHHh
Q 041357 91 SVPK--NVCDQIRLWESDLNRVETTPAHYYDEFPSRDVFEAACDYARDQSGLLWEDSKKMRLVVNAEIHMHMREFLR 165 (169)
Q Consensus 91 ~iP~--tV~dQIrLWE~Er~Rl~~~~g~ly~~f~s~~~f~~~~~yA~~~g~llw~~~~kr~~~V~~~~h~~vr~f~k 165 (169)
++|- |..+=.+-|+.--+-+++.++- .. .-. +|.+++...+ +.-+++.+..=.-+++.+|++
T Consensus 130 ~ipGv~TptEi~~A~~~Gad~vK~FPa~---~~---gG~----~~lkal~~p~---p~ip~~ptGGI~~~n~~~~l~ 193 (232)
T 4e38_A 130 IVPGVNNPSTVEAALEMGLTTLKFFPAE---AS---GGI----SMVKSLVGPY---GDIRLMPTGGITPSNIDNYLA 193 (232)
T ss_dssp EECEECSHHHHHHHHHTTCCEEEECSTT---TT---THH----HHHHHHHTTC---TTCEEEEBSSCCTTTHHHHHT
T ss_pred EEcCCCCHHHHHHHHHcCCCEEEECcCc---cc---cCH----HHHHHHHHHh---cCCCeeeEcCCCHHHHHHHHH
Confidence 5553 6666667888888888886641 00 011 3334333222 234445444444567787775
No 6
>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}
Probab=28.39 E-value=93 Score=21.74 Aligned_cols=45 Identities=13% Similarity=0.158 Sum_probs=27.3
Q ss_pred EEEcCCHhHHHHHHHHHhhhh-ccC-----ceEEEEeCHHHHHHHHHcCCCc
Q 041357 31 YAYSTSKLHCEILRLFSKIEY-QLP-----NLIVGAITKESLYNAFENGITT 76 (169)
Q Consensus 31 YAYT~S~LqiaiL~lF~~l~~-r~P-----Nlvvg~iTR~Sv~~Al~~GITA 76 (169)
++..+.++. .++.+|.+-.. .+| +-++|+||+..+-+++...|.-
T Consensus 97 ~v~~~~~l~-~~~~~m~~~~~~~lpVvd~~g~~vGivt~~dil~~l~~~~~d 147 (153)
T 3oco_A 97 SVPENMKVP-DVMEEMSAHRVPMAIVIDEYGGTSGIITDKDVYEELFGNLRD 147 (153)
T ss_dssp EEETTSBHH-HHHHHHHHTTCSCEEEECTTSCEEEEECHHHHHHHHHC----
T ss_pred EECCCCCHH-HHHHHHHHcCCcEEEEEeCCCCEEEEeeHHHHHHHHhccCCC
Confidence 344444544 45566665443 333 5789999999999999876654
No 7
>2gjf_A Designed protein; procarboxypeptidase, de novo protein; NMR {}
Probab=27.68 E-value=1.2e+02 Score=19.70 Aligned_cols=46 Identities=7% Similarity=0.100 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHH--HcCeEEeecCCc----cEEEEecccchHHHHHHhhc
Q 041357 122 PSRDVFEAACDYAR--DQSGLLWEDSKK----MRLVVNAEIHMHMREFLRGQ 167 (169)
Q Consensus 122 ~s~~~f~~~~~yA~--~~g~llw~~~~k----r~~~V~~~~h~~vr~f~k~~ 167 (169)
.+.++.+.+.+.++ +.++-.|..+.. --+.|.++.-+.+.+++++.
T Consensus 17 ~~~~q~~~L~~L~~~~~~~ldfW~~~~~~~~~vdI~V~p~~~~~f~~~L~~~ 68 (78)
T 2gjf_A 17 TNEEQVAFLEALAKQDELNFDWQNPPTEPGQPVVILIPSDMVEWFLEMLKAK 68 (78)
T ss_dssp CSHHHHHHHHHHHTCTTTCCEESSCTTSTTCCEEEEECTTSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCEEeeCCCCCCCCeEEEEECHHHHHHHHHHHHHC
Confidence 45667777777766 678899986632 24688999999999998863
No 8
>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}
Probab=27.67 E-value=37 Score=23.41 Aligned_cols=44 Identities=18% Similarity=0.183 Sum_probs=28.0
Q ss_pred EEEcCCHhHHHHHHHHHhhhhc-cC-----ceEEEEeCHHHHHHHHHcCCC
Q 041357 31 YAYSTSKLHCEILRLFSKIEYQ-LP-----NLIVGAITKESLYNAFENGIT 75 (169)
Q Consensus 31 YAYT~S~LqiaiL~lF~~l~~r-~P-----Nlvvg~iTR~Sv~~Al~~GIT 75 (169)
++..+.++. .++.+|.+-..+ +| +-++|+||++.+-+++...||
T Consensus 81 ~v~~~~~l~-~~~~~m~~~~~~~~~Vvd~~g~lvGiit~~Dil~~l~g~i~ 130 (130)
T 3hf7_A 81 FVPEGTPLS-TQLVKFQRNKKKVGLVVDEYGDIQGLVTVEDILEEIVGDFT 130 (130)
T ss_dssp EEETTCBHH-HHHHHHHHHCCCEEEEECTTSCEEEEEEHHHHHHHHHC---
T ss_pred EeCCCCcHH-HHHHHHHhcCCeEEEEEcCCCCEEEEeeHHHHHHHHhCCCC
Confidence 444455553 566777765433 22 467899999999999987665
No 9
>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1
Probab=26.66 E-value=27 Score=23.27 Aligned_cols=22 Identities=23% Similarity=0.308 Sum_probs=17.9
Q ss_pred CceEEEEeCHHHHHHHHHcCCC
Q 041357 54 PNLIVGAITKESLYNAFENGIT 75 (169)
Q Consensus 54 PNlvvg~iTR~Sv~~Al~~GIT 75 (169)
.+-.+|.||+..+.+++..|..
T Consensus 40 ~~~~~G~it~~dl~~~~~~~~~ 61 (125)
T 1pbj_A 40 EGVRVGIVTTWDVLEAIAEGDD 61 (125)
T ss_dssp TTEEEEEEEHHHHHHHHHHTCC
T ss_pred CCeeEEEEeHHHHHHHHhcCCc
Confidence 3567899999999999877643
No 10
>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*
Probab=26.15 E-value=27 Score=24.51 Aligned_cols=43 Identities=19% Similarity=0.278 Sum_probs=27.0
Q ss_pred EEcCCHhHHHHHHHHHhhhh-cc-----CceEEEEeCHHHHHHHHHcCCC
Q 041357 32 AYSTSKLHCEILRLFSKIEY-QL-----PNLIVGAITKESLYNAFENGIT 75 (169)
Q Consensus 32 AYT~S~LqiaiL~lF~~l~~-r~-----PNlvvg~iTR~Sv~~Al~~GIT 75 (169)
...+.++. .++.++.+-.. .+ -+=++|+||+..+.+++..|..
T Consensus 43 v~~~~~~~-~a~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~ 91 (149)
T 3k2v_A 43 VGLQATLR-DALLEITRKNLGMTAICDDDMNIIGIFTDGDLRRVFDTGVD 91 (149)
T ss_dssp ECTTCBHH-HHHHHHHHHTSSEEEEECTTCBEEEEEEHHHHHHHHCSSSC
T ss_pred ECCCCcHH-HHHHHHHhCCCcEEEEECCCCcEEEEecHHHHHHHHhcCCC
Confidence 34444444 34455554332 22 2467899999999999977654
No 11
>1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter actinomycetemcomitans} SCOP: c.1.8.6
Probab=23.26 E-value=40 Score=28.86 Aligned_cols=22 Identities=23% Similarity=0.221 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHHHHHHHcCeEE
Q 041357 120 EFPSRDVFEAACDYARDQSGLL 141 (169)
Q Consensus 120 ~f~s~~~f~~~~~yA~~~g~ll 141 (169)
.|-+++|+..+++||++.|+-|
T Consensus 90 g~YT~~di~eiv~YA~~rgI~V 111 (367)
T 1yht_A 90 PFLSYRQLDDIKAYAKAKGIEL 111 (367)
T ss_dssp EEBCHHHHHHHHHHHHHTTCEE
T ss_pred CCcCHHHHHHHHHHHHHcCCEE
Confidence 5789999999999999999976
No 12
>3s4e_A Dual specificity protein phosphatase 19; PTP, protein tyrosine phosphatase, hydrolase; 1.26A {Homo sapiens}
Probab=22.95 E-value=25 Score=25.08 Aligned_cols=49 Identities=6% Similarity=0.034 Sum_probs=30.7
Q ss_pred eCHHHH-HHH---HHcCCCccccccChhhhhcCCCCChhHHHHHHHHHHhcCc
Q 041357 61 ITKESL-YNA---FENGITTEQQNAHPRVADKIPSVPKNVCDQIRLWESDLNR 109 (169)
Q Consensus 61 iTR~Sv-~~A---l~~GITA~Q~~aHp~m~~~~p~iP~tV~dQIrLWE~Er~R 109 (169)
++|... --| ...|.+.+++..+=.-.+..-...+.+..|++.||.+++|
T Consensus 92 ~sRS~~~v~ayLm~~~~~~~~~A~~~v~~~Rp~~~pn~~f~~qL~~~e~~~~~ 144 (144)
T 3s4e_A 92 VSRAAAIVIGFLMNSEQTSFTSAFSLVKNARPSICPNSGFMEQLRTYQEGKES 144 (144)
T ss_dssp SSHHHHHHHHHHHHHHCCCHHHHHHHHHHHSTTCCCCHHHHHHHHHTTHHHHC
T ss_pred CchHHHHHHHHHHHHcCCCHHHHHHHHHHHCCCcCCCHHHHHHHHHHHHhccC
Confidence 678644 333 2589999995555222221222345899999999988754
No 13
>1vjq_A Designed protein; structural genomics, engineered protein, PSI, protein struct initiative, structural genomics of pathogenic protozoa CONS SGPP; 2.10A {} SCOP: k.43.1.1
Probab=22.95 E-value=1e+02 Score=20.01 Aligned_cols=46 Identities=9% Similarity=0.263 Sum_probs=34.4
Q ss_pred CCHHHHHHHHHHHHHcCeEE-eecCC-----ccEEEEecccchHHHHHHhhc
Q 041357 122 PSRDVFEAACDYARDQSGLL-WEDSK-----KMRLVVNAEIHMHMREFLRGQ 167 (169)
Q Consensus 122 ~s~~~f~~~~~yA~~~g~ll-w~~~~-----kr~~~V~~~~h~~vr~f~k~~ 167 (169)
.+.++.+.+.+.++..++-. |..+. .--+.|.++.-+.+++++++.
T Consensus 9 ~~~~q~~~L~~L~~~~~~df~W~~~~~~~~~~~di~V~p~~~~~f~~~L~~~ 60 (79)
T 1vjq_A 9 TNEEQVAFLEALAKQDELNFDWQNPPTEPGQPVVILIPSDMVEWFLEMLKAK 60 (79)
T ss_dssp CSHHHHHHHHHHHTSCCTTCEESSCCCSTTCCEEEEECGGGHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhccCceEEEcCCCCCCCCCcEEEEECHHHHHHHHHHHHHC
Confidence 45667777777777777888 98664 224678999889999998863
No 14
>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}
Probab=22.86 E-value=1.3e+02 Score=21.65 Aligned_cols=46 Identities=15% Similarity=0.175 Sum_probs=31.0
Q ss_pred EEEEcCCHhHHHHHHHHHhhhhc-cC-----ceEEEEeCHHHHHHHHHcCCCc
Q 041357 30 MYAYSTSKLHCEILRLFSKIEYQ-LP-----NLIVGAITKESLYNAFENGITT 76 (169)
Q Consensus 30 vYAYT~S~LqiaiL~lF~~l~~r-~P-----Nlvvg~iTR~Sv~~Al~~GITA 76 (169)
+++..+.++. .++.+|.+-..+ +| +=++|+||++.+-+++...|.-
T Consensus 117 ~~v~~~~~l~-~a~~~m~~~~~~~~pVvd~~g~lvGiit~~Dil~~l~~~~~d 168 (172)
T 3lhh_A 117 NFVPNSLSGM-ELLEHFRTTGSQMVFVVDEYGDLKGLVTLQDMMDALTGEFFQ 168 (172)
T ss_dssp EEEETTCCHH-HHHHHHHHHTCSEEEEECTTSCEEEEEEHHHHHHHHHTTCC-
T ss_pred eEeCCCCCHH-HHHHHHHHcCCeEEEEEeCCCCEEEEeeHHHHHHHHhCCCcc
Confidence 3455555554 556677665433 33 5789999999999999877654
No 15
>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}
Probab=21.45 E-value=94 Score=21.05 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=29.3
Q ss_pred EEEEcCCHhHHHHHHHHHhhhhc-cC-----ceEEEEeCHHHHHHHHHcCC
Q 041357 30 MYAYSTSKLHCEILRLFSKIEYQ-LP-----NLIVGAITKESLYNAFENGI 74 (169)
Q Consensus 30 vYAYT~S~LqiaiL~lF~~l~~r-~P-----Nlvvg~iTR~Sv~~Al~~GI 74 (169)
+++..+.++. .++.+|.+-..+ +| |-++|+||++.+-+++...|
T Consensus 79 ~~v~~~~~l~-~~~~~m~~~~~~~~pVvd~~g~~~Giit~~Dil~~l~gei 128 (129)
T 3jtf_A 79 VFIPEVKRLN-VLLREFRASRNHLAIVIDEHGGISGLVTMEDVLEQIVGDI 128 (129)
T ss_dssp CEEETTCBHH-HHHHHHHTSSCCEEEEECC-CCEEEEEEHHHHHHHHHHTC
T ss_pred eEeCCCCcHH-HHHHHHHhcCCeEEEEEeCCCCEEEEEEHHHHHHHHhCCC
Confidence 3455555554 566777664432 32 57899999999999986544
No 16
>2yl5_A Beta-N-acetylhexosaminidase; hydrolase; 2.15A {Streptococcus pneumoniae} PDB: 2yla_A* 2yl9_A*
Probab=20.52 E-value=54 Score=28.83 Aligned_cols=23 Identities=13% Similarity=0.105 Sum_probs=21.0
Q ss_pred cCCCCHHHHHHHHHHHHHcCeEE
Q 041357 119 DEFPSRDVFEAACDYARDQSGLL 141 (169)
Q Consensus 119 ~~f~s~~~f~~~~~yA~~~g~ll 141 (169)
..|-+++|+..+++||+++|+-|
T Consensus 89 ~~~YT~~di~eIv~YA~~rgI~V 111 (442)
T 2yl5_A 89 GTALTQAEVTELIEYAKSKDIGL 111 (442)
T ss_dssp CSCBCHHHHHHHHHHHHTTTCEE
T ss_pred CCCcCHHHHHHHHHHHHHcCCee
Confidence 56889999999999999999976
Done!