Query         041358
Match_columns 226
No_of_seqs    164 out of 1670
Neff          6.1 
Searched_HMMs 46136
Date          Fri Mar 29 06:19:56 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041358.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041358hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PLN02792 oxidoreductase        100.0 1.3E-44 2.8E-49  347.5  21.0  188    1-224   242-525 (536)
  2 PLN02991 oxidoreductase        100.0 2.2E-44 4.8E-49  346.1  20.9  188    1-224   251-532 (543)
  3 PLN00044 multi-copper oxidase- 100.0 2.4E-44 5.2E-49  348.6  20.4  121   73-224   434-556 (596)
  4 TIGR03389 laccase laccase, pla 100.0 1.3E-43 2.8E-48  341.0  22.3  122   74-222   417-539 (539)
  5 PLN02835 oxidoreductase        100.0 1.6E-43 3.4E-48  340.4  20.9  120   74-224   413-533 (539)
  6 KOG1263 Multicopper oxidases [ 100.0 5.3E-43 1.2E-47  336.8  20.5  196    1-224   258-557 (563)
  7 PLN02168 copper ion binding /  100.0 1.7E-42 3.6E-47  333.4  21.8  120   74-224   417-543 (545)
  8 PLN02354 copper ion binding /  100.0   2E-42 4.3E-47  333.5  20.3  120   74-224   420-540 (552)
  9 TIGR03388 ascorbase L-ascorbat 100.0 5.5E-42 1.2E-46  329.9  20.5  119   74-224   418-540 (541)
 10 PLN02191 L-ascorbate oxidase   100.0 7.3E-42 1.6E-46  331.0  20.9  119   74-224   441-563 (574)
 11 PLN02604 oxidoreductase        100.0 3.5E-41 7.7E-46  325.8  20.7  119   74-224   441-563 (566)
 12 TIGR03390 ascorbOXfungal L-asc 100.0 3.9E-38 8.5E-43  303.1  19.8  115   73-204   413-533 (538)
 13 PF07731 Cu-oxidase_2:  Multico 100.0 2.7E-29 5.9E-34  199.8  11.5  102   72-204    34-136 (138)
 14 PRK10965 multicopper oxidase;   99.9 3.6E-24 7.7E-29  205.8  18.1   93   73-202   427-522 (523)
 15 TIGR01480 copper_res_A copper-  99.9 4.4E-24 9.4E-29  207.5  18.1   86   73-202   500-586 (587)
 16 PRK10883 FtsI repressor; Provi  99.9 2.8E-22 6.1E-27  190.6  16.4   89   73-204   376-469 (471)
 17 COG2132 SufI Putative multicop  99.9 4.9E-21 1.1E-25  180.7  17.9   91   73-203   358-449 (451)
 18 TIGR02376 Cu_nitrite_red nitri  99.1 6.9E-10 1.5E-14  100.8  10.0   83   73-205    60-147 (311)
 19 PLN02604 oxidoreductase         98.9 1.6E-08 3.4E-13   98.7  12.6   89   73-205    56-145 (566)
 20 PF07732 Cu-oxidase_3:  Multico  98.7   5E-08 1.1E-12   76.8   7.8   88   73-205    27-116 (117)
 21 TIGR02376 Cu_nitrite_red nitri  98.6 2.6E-07 5.6E-12   84.1   9.6   90   74-203   204-296 (311)
 22 TIGR03388 ascorbase L-ascorbat  98.5 1.3E-06 2.8E-11   84.9  13.3   89   73-205    33-122 (541)
 23 PF00394 Cu-oxidase:  Multicopp  98.2 7.5E-06 1.6E-10   67.1   8.6   91   72-203    60-156 (159)
 24 TIGR03095 rusti_cyanin rusticy  98.1 2.9E-05 6.2E-10   63.7   9.3   34  170-203   114-148 (148)
 25 PLN02191 L-ascorbate oxidase    98.0 2.3E-05   5E-10   76.9   8.9   89   73-205    55-144 (574)
 26 TIGR01480 copper_res_A copper-  97.9 0.00015 3.3E-09   71.4  12.6   86   73-205    77-163 (587)
 27 TIGR03389 laccase laccase, pla  97.7 0.00038 8.3E-09   67.8  11.9   88   73-206    35-124 (539)
 28 PLN02835 oxidoreductase         97.7 0.00046   1E-08   67.4  12.0  117   21-204    30-148 (539)
 29 PLN02168 copper ion binding /   97.6 0.00068 1.5E-08   66.3  12.1  103   42-206    43-147 (545)
 30 PLN02792 oxidoreductase         97.5 0.00073 1.6E-08   66.0  10.9   87   73-205    48-136 (536)
 31 PRK10965 multicopper oxidase;   97.5  0.0015 3.3E-08   63.5  12.6   84   73-206    78-167 (523)
 32 PLN02354 copper ion binding /   97.4 0.00073 1.6E-08   66.2   9.7  102   42-205    44-147 (552)
 33 PLN00044 multi-copper oxidase-  97.2 0.00088 1.9E-08   66.2   7.7   88   73-206    61-150 (596)
 34 PRK10883 FtsI repressor; Provi  97.2   0.012 2.5E-07   56.7  14.6   55   73-141   221-276 (471)
 35 PLN02991 oxidoreductase         96.9    0.01 2.2E-07   58.1  11.2  102   42-205    45-148 (543)
 36 TIGR03390 ascorbOXfungal L-asc  96.9   0.013 2.8E-07   57.3  11.8   88   73-205    40-130 (538)
 37 TIGR02656 cyanin_plasto plasto  96.9  0.0063 1.4E-07   46.1   7.7   82   73-203    18-99  (99)
 38 PF00127 Copper-bind:  Copper b  96.0    0.12 2.7E-06   38.9  10.3   26  176-203    74-99  (99)
 39 TIGR03096 nitroso_cyanin nitro  95.6   0.066 1.4E-06   43.5   7.7   59   73-189    62-121 (135)
 40 KOG1263 Multicopper oxidases [  95.5   0.055 1.2E-06   53.3   8.3   88   73-206    60-149 (563)
 41 PRK02888 nitrous-oxide reducta  95.0    0.13 2.8E-06   51.3   9.0   77   73-204   556-634 (635)
 42 PF13473 Cupredoxin_1:  Cupredo  93.9    0.36 7.9E-06   36.5   7.4   61   73-191    36-97  (104)
 43 PRK02710 plastocyanin; Provisi  92.8    0.63 1.4E-05   36.4   7.4   26  176-203    94-119 (119)
 44 COG2132 SufI Putative multicop  92.6    0.59 1.3E-05   44.5   8.3   87   73-206    65-152 (451)
 45 TIGR02375 pseudoazurin pseudoa  90.5     1.6 3.4E-05   34.4   7.4   29  175-205    61-89  (116)
 46 COG4454 Uncharacterized copper  88.4     1.7 3.6E-05   36.2   6.3   94   73-203    64-157 (158)
 47 TIGR03102 halo_cynanin halocya  87.4     4.4 9.6E-05   31.8   8.0   27  175-203    89-115 (115)
 48 PF06525 SoxE:  Sulfocyanin (So  86.9     9.3  0.0002   32.9  10.2   30  176-205   159-188 (196)
 49 TIGR02657 amicyanin amicyanin.  86.5     4.5 9.8E-05   29.3   7.1   25  175-203    59-83  (83)
 50 TIGR03094 sulfo_cyanin sulfocy  83.9      16 0.00035   31.3  10.1   31  175-205   157-187 (195)
 51 TIGR02866 CoxB cytochrome c ox  73.4      20 0.00044   30.4   7.8   34  171-204   157-192 (201)
 52 PF00116 COX2:  Cytochrome C ox  52.6 1.1E+02  0.0024   23.8   9.5   27   72-102    46-72  (120)
 53 COG3794 PetE Plastocyanin [Ene  48.9      99  0.0022   24.8   7.1   27  175-203   101-127 (128)
 54 COG1622 CyoA Heme/copper-type   41.5 1.7E+02  0.0038   25.9   8.2   75   72-205   137-213 (247)
 55 PF12690 BsuPI:  Intracellular   36.5      28 0.00061   25.5   2.1   14    2-15     18-31  (82)
 56 PF07732 Cu-oxidase_3:  Multico  36.0      36 0.00077   26.4   2.7   28    3-30     73-100 (117)
 57 MTH00140 COX2 cytochrome c oxi  34.0 2.5E+02  0.0055   24.3   8.0   19   72-90    140-158 (228)
 58 TIGR03121 one_C_dehyd_A formyl  30.8      16 0.00034   36.3  -0.1   12   94-105   226-237 (556)
 59 TIGR01432 QOXA cytochrome aa3   28.9 1.9E+02  0.0042   24.7   6.4   17   73-89    131-147 (217)
 60 PF06775 Seipin:  Putative adip  28.8      72  0.0016   27.0   3.6   47    3-50     52-105 (199)
 61 TIGR01433 CyoA cytochrome o ub  28.1 1.9E+02  0.0041   25.2   6.2   18   72-89    139-156 (226)
 62 PF10633 NPCBM_assoc:  NPCBM-as  27.9      85  0.0018   22.1   3.3   27    3-29     45-75  (78)
 63 PTZ00047 cytochrome c oxidase   23.3 4.5E+02  0.0097   22.0   7.3   17   73-89     74-90  (162)
 64 TIGR03833 conserved hypothetic  21.3      95  0.0021   21.9   2.4   20    3-22      7-26  (62)

No 1  
>PLN02792 oxidoreductase
Probab=100.00  E-value=1.3e-44  Score=347.51  Aligned_cols=188  Identities=21%  Similarity=0.295  Sum_probs=153.3

Q ss_pred             CEEeccCceEEEEEEeCCCCCeeEEEEEeccCCCccCCCCCceEEEEEecCCCCCC--CCCC------------------
Q 041358            1 YLTISPGQIIDVLIKANQIPNKYYMSAKAHSSATDVYDDNTTTTAIVQYEGLYPSS--KTPL------------------   60 (226)
Q Consensus         1 ~l~I~pGQRydVLV~a~~~pg~Y~ira~~~~~~~~~~~~~~~~~AILrY~g~~p~~--~~~l------------------   60 (226)
                      .|.|++||||||||++++++|+|||++.+...+     .+..++|||+|.|+....  .+.+                  
T Consensus       242 ~l~i~~GqRydVlV~a~~~~g~Y~i~a~~~~~~-----~~~~~~ail~Y~g~~~~~~~~p~~p~~~~~~~~~~~~~~~~~  316 (536)
T PLN02792        242 SLDIHVGQTYSVLVTMDQPPQNYSIVVSTRFIA-----AKVLVSSTLHYSNSKGHKIIHARQPDPDDLEWSIKQAQSIRT  316 (536)
T ss_pred             EEEEccCceEEEEEEcCCCCceEEEEEEeccCC-----CCCceEEEEEECCCCCCCCCCCCCCCcCCccccccchhhhhh
Confidence            378999999999999999889999999876432     235788999998753210  0000                  


Q ss_pred             ------C-CCCC-----------C-------------------CCC----------------------------------
Q 041358           61 ------P-NLPS-----------Y-------------------DDT----------------------------------   69 (226)
Q Consensus        61 ------P-~~p~-----------~-------------------~d~----------------------------------   69 (226)
                            | ..|.           .                   |+.                                  
T Consensus       317 ~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~  396 (536)
T PLN02792        317 NLTASGPRTNPQGSYHYGKMKISRTLILESSAALVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGG  396 (536)
T ss_pred             ccCCCCCCCCCCcccccceeccceeEEecccccccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccCCcccC
Confidence                  0 0110           0                   000                                  


Q ss_pred             ----cceEEEeecCCEEEEEEEcCCCCCCcCcceeecCceEEEEecCCCCCCCccccccCCCCCCCccceEEcCCCCCCC
Q 041358           70 ----KASVKVLEYNTAVEIVFQGTDLLAGTDHPMHLHGYSFYVVGGGFGNFDRAKDAKRFNFVEPSLQNTIMVPKNVNGP  145 (226)
Q Consensus        70 ----~~~~~~~~~g~~v~iv~~n~~~~~~~~HP~HlHG~~f~vv~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~  145 (226)
                          ..+++.+++|++|||+|+|.   ....||||||||+||||++|.|.|++. +...+|+.+|++|||+.|+++    
T Consensus       397 ~~~~~~~v~~~~~~~~VeiViqn~---~~~~HP~HLHGh~F~Vvg~G~G~~~~~-~~~~~Nl~nP~~RdTv~v~~~----  468 (536)
T PLN02792        397 GMRLDTSVMGAHHNAFLEIIFQNR---EKIVQSYHLDGYNFWVVGINKGIWSRA-SRREYNLKDAISRSTTQVYPE----  468 (536)
T ss_pred             CCccCceEEEcCCCCEEEEEEECC---CCCCCCeeeCCCceEEEeecCCCCCcc-cccccCcCCCCccceEEECCC----
Confidence                01245688999999999997   356899999999999999999999874 456799999999999999999    


Q ss_pred             CCCCCCcccchhhhhhhccccceeEEEEE-eCCCCeeEEEeecchhhhhccceeEEEEEcCcccccccCCCchhHhhccc
Q 041358          146 KTFKCPKITCHEQALIHMNMCLHAWVLTD-TCHKKRAWFVHCHLDHHQSWAMQMAFIVKNDRCAKAKMLPPLCELYKLCH  224 (226)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ir-~adnpG~W~~HCHi~~H~~~Gm~~~~~v~~~~~~~~~~~~~p~~~~~~~~  224 (226)
                                             ||++|| ++||||+|+||||+.+|+.+||+++|+|+++....+++.+||.+++.|+.
T Consensus       469 -----------------------gw~aIRf~aDNPGvW~~HCh~~~h~~~Gm~~~~~v~~~~~~~~~~~~pP~~~~~Cg~  525 (536)
T PLN02792        469 -----------------------SWTAVYVALDNVGMWNLRSQFWARQYLGQQFYLRVYSPTHSLKDEYPLPKNALLCGR  525 (536)
T ss_pred             -----------------------CEEEEEEEeeCCEEEeeeEcchhccccceEEEEEEccCCCccccccCCCcccCcccc
Confidence                                   999999 99999999999999999999999999999988877899999999999964


No 2  
>PLN02991 oxidoreductase
Probab=100.00  E-value=2.2e-44  Score=346.14  Aligned_cols=188  Identities=24%  Similarity=0.323  Sum_probs=152.4

Q ss_pred             CEEeccCceEEEEEEeCCCCCeeEEEEEeccCCCccCCCCCceEEEEEecCCCCCC--C-CC------------------
Q 041358            1 YLTISPGQIIDVLIKANQIPNKYYMSAKAHSSATDVYDDNTTTTAIVQYEGLYPSS--K-TP------------------   59 (226)
Q Consensus         1 ~l~I~pGQRydVLV~a~~~pg~Y~ira~~~~~~~~~~~~~~~~~AILrY~g~~p~~--~-~~------------------   59 (226)
                      .|.|++||||||||++++++|+||||+.+....     .+..++|||+|+|+....  + +.                  
T Consensus       251 ~l~i~~GQRydvlv~a~~~~~~y~i~~~~~~~~-----~~~~~~AIl~Y~g~~~~~~~~~p~~p~~~~~~~~~~~~~~~~  325 (543)
T PLN02991        251 SLDVHVGQSYSVLITADQPAKDYYIVVSSRFTS-----KILITTGVLHYSNSAGPVSGPIPDGPIQLSWSFDQARAIKTN  325 (543)
T ss_pred             EEEEcCCcEEEEEEECCCCCCcEEEEEeeccCC-----CCcceEEEEEeCCCCCCCCCCCCCCCccccccccchhhhhhc
Confidence            378999999999999999999999999875331     235679999998863110  0 00                  


Q ss_pred             C-----CCCCC---------CC------------C--Ccc----------------------------------------
Q 041358           60 L-----PNLPS---------YD------------D--TKA----------------------------------------   71 (226)
Q Consensus        60 l-----P~~p~---------~~------------d--~~~----------------------------------------   71 (226)
                      |     +..|.         .+            +  ..|                                        
T Consensus       326 l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~~~  405 (543)
T PLN02991        326 LTASGPRPNPQGSYHYGKINITRTIRLANSAGNIEGKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQPTNGAI  405 (543)
T ss_pred             ccCCCCCCCCCccccccccccceeEEEeecccccCceEEEEECCCccCCCCCChhhhhhhcccCccccccccccCCCCcc
Confidence            0     00010         00            0  001                                        


Q ss_pred             ----eEEEeecCCEEEEEEEcCCCCCCcCcceeecCceEEEEecCCCCCCCccccccCCCCCCCccceEEcCCCCCCCCC
Q 041358           72 ----SVKVLEYNTAVEIVFQGTDLLAGTDHPMHLHGYSFYVVGGGFGNFDRAKDAKRFNFVEPSLQNTIMVPKNVNGPKT  147 (226)
Q Consensus        72 ----~~~~~~~g~~v~iv~~n~~~~~~~~HP~HlHG~~f~vv~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~~~  147 (226)
                          .++.+++|++|||+|+|..   ...||||||||+||||++|.|.|+.. +...+|+.+|++|||+.|+++      
T Consensus       406 ~~~~~v~~~~~~~~VeiViqn~~---~~~HP~HLHGh~F~Vvg~G~G~f~~~-~~~~~Nl~nP~rRDTv~vp~~------  475 (543)
T PLN02991        406 FPVTSVMQTDYKAFVEIVFENWE---DIVQTWHLDGYSFYVVGMELGKWSAA-SRKVYNLNDAVSRCTVQVYPR------  475 (543)
T ss_pred             ccCCcEEEcCCCCEEEEEEeCCC---CCCCCeeeCCcceEEEEeCCCCCCcc-cccccCCCCCCcccEEEECCC------
Confidence                1355678999999999984   56999999999999999999999976 456799999999999999999      


Q ss_pred             CCCCcccchhhhhhhccccceeEEEEE-eCCCCeeEEEeecchhhhhccceeEEEEEcCcccccccCCCchhHhhccc
Q 041358          148 FKCPKITCHEQALIHMNMCLHAWVLTD-TCHKKRAWFVHCHLDHHQSWAMQMAFIVKNDRCAKAKMLPPLCELYKLCH  224 (226)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~ir-~adnpG~W~~HCHi~~H~~~Gm~~~~~v~~~~~~~~~~~~~p~~~~~~~~  224 (226)
                                           ||++|| ++||||+|+|||||.+|+.+||+++++|+++....++++++|.++++|+.
T Consensus       476 ---------------------Gw~vIRF~aDNPG~W~~HCHi~~h~~~gm~~~~~v~~~~~~~~~~~~~P~~~~~Cg~  532 (543)
T PLN02991        476 ---------------------SWTAIYVSLDNVGMWNLRSELWERQYLGQQFYMRVYTTSTSLRDEYLIPKNALLCGR  532 (543)
T ss_pred             ---------------------CEEEEEEECCCCEEeeeeeCccccccccEEEEEEecCCCCccccccCCCcccCcccc
Confidence                                 999999 99999999999999999999999999999988888899999999999964


No 3  
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00  E-value=2.4e-44  Score=348.62  Aligned_cols=121  Identities=21%  Similarity=0.263  Sum_probs=110.6

Q ss_pred             EEEeecCCEEEEEEEcCCCCCCcCcceeecCceEEEEecCCCCCCCccccccCCCCCCCccceEEcCCCCCCCCCCCCCc
Q 041358           73 VKVLEYNTAVEIVFQGTDLLAGTDHPMHLHGYSFYVVGGGFGNFDRAKDAKRFNFVEPSLQNTIMVPKNVNGPKTFKCPK  152 (226)
Q Consensus        73 ~~~~~~g~~v~iv~~n~~~~~~~~HP~HlHG~~f~vv~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~~~~~~~~  152 (226)
                      ++.+++|++|||+|||.   ....||||||||+||||++|.|+|+.. +...||+.+|++|||+.|+++           
T Consensus       434 v~~~~~n~~VeiV~qn~---~~~~HP~HLHGh~F~Vvg~G~G~~~~~-~~~~~Nl~nPp~RdTv~vp~~-----------  498 (596)
T PLN00044        434 IINGTYKGFMEIIFQNN---ATNVQSYHLDGYAFFVVGMDYGLWTDN-SRGTYNKWDGVARSTIQVFPG-----------  498 (596)
T ss_pred             EEEcCCCCEEEEEEeCC---CCCCCCeeEcCccEEEEeecCCCCCCC-cccccccCCCCccceEEeCCC-----------
Confidence            45677899999999997   366999999999999999999999965 456799999999999999999           


Q ss_pred             ccchhhhhhhccccceeEEEEE-eCCCCeeEEEeecchhhhhccceeEEEEEcCccc-ccccCCCchhHhhccc
Q 041358          153 ITCHEQALIHMNMCLHAWVLTD-TCHKKRAWFVHCHLDHHQSWAMQMAFIVKNDRCA-KAKMLPPLCELYKLCH  224 (226)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~ir-~adnpG~W~~HCHi~~H~~~Gm~~~~~v~~~~~~-~~~~~~~p~~~~~~~~  224 (226)
                                      ||++|| ++||||+|+||||++.|+.+||+++|+|+++.+. .+++++||.+++.|+.
T Consensus       499 ----------------gW~aIRF~aDNPG~W~lHCH~~~h~~~Gm~~~~~v~~~~~~~~~~~~~pP~~~~~Cg~  556 (596)
T PLN00044        499 ----------------AWTAILVFLDNAGIWNLRVENLDAWYLGQEVYINVVNPEDNSNKTVLPIPDNAIFCGA  556 (596)
T ss_pred             ----------------CeEEEEEecCCCEEehhhccCchhhcccCcEEEEEecCCCCccccccCCCcccCcccc
Confidence                            999999 9999999999999999999999999999988765 6789999999999964


No 4  
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00  E-value=1.3e-43  Score=341.01  Aligned_cols=122  Identities=43%  Similarity=0.932  Sum_probs=109.2

Q ss_pred             EEeecCCEEEEEEEcCCCCCCcCcceeecCceEEEEecCCCCCCCccccccCCCCCCCccceEEcCCCCCCCCCCCCCcc
Q 041358           74 KVLEYNTAVEIVFQGTDLLAGTDHPMHLHGYSFYVVGGGFGNFDRAKDAKRFNFVEPSLQNTIMVPKNVNGPKTFKCPKI  153 (226)
Q Consensus        74 ~~~~~g~~v~iv~~n~~~~~~~~HP~HlHG~~f~vv~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~~~~~~~~~  153 (226)
                      +.++.|++|||+|+|.+......||||||||+||||++|.|.|+..++...+|+.+|++|||++|+++            
T Consensus       417 ~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~------------  484 (539)
T TIGR03389       417 VRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTG------------  484 (539)
T ss_pred             EEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCCC------------
Confidence            56677899999999974212458999999999999999999998765555789999999999999999            


Q ss_pred             cchhhhhhhccccceeEEEEE-eCCCCeeEEEeecchhhhhccceeEEEEEcCcccccccCCCchhHhhc
Q 041358          154 TCHEQALIHMNMCLHAWVLTD-TCHKKRAWFVHCHLDHHQSWAMQMAFIVKNDRCAKAKMLPPLCELYKL  222 (226)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~ir-~adnpG~W~~HCHi~~H~~~Gm~~~~~v~~~~~~~~~~~~~p~~~~~~  222 (226)
                                     ||++|| ++||||+|+|||||+||++.||+++|++.++.+...+++++|++++.|
T Consensus       485 ---------------g~vvirf~adNPG~W~~HCHi~~H~~~Gm~~~~~~~~~~~~~~~~~~~p~~~~~c  539 (539)
T TIGR03389       485 ---------------GWAAIRFVADNPGVWFMHCHLEVHTTWGLKMAFLVDNGKGPNQSLLPPPSDLPSC  539 (539)
T ss_pred             ---------------ceEEEEEecCCCeEEEEEecccchhhhcceEEEEEccCCCCccccCCCCccCCCC
Confidence                           999999 999999999999999999999999999998877667899999999988


No 5  
>PLN02835 oxidoreductase
Probab=100.00  E-value=1.6e-43  Score=340.40  Aligned_cols=120  Identities=23%  Similarity=0.299  Sum_probs=109.5

Q ss_pred             EEeecCCEEEEEEEcCCCCCCcCcceeecCceEEEEecCCCCCCCccccccCCCCCCCccceEEcCCCCCCCCCCCCCcc
Q 041358           74 KVLEYNTAVEIVFQGTDLLAGTDHPMHLHGYSFYVVGGGFGNFDRAKDAKRFNFVEPSLQNTIMVPKNVNGPKTFKCPKI  153 (226)
Q Consensus        74 ~~~~~g~~v~iv~~n~~~~~~~~HP~HlHG~~f~vv~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~~~~~~~~~  153 (226)
                      +.+++|++|||+|+|.   ....||||||||+||||++|.|.|+... ...+|+.+|++|||+.|+++            
T Consensus       413 ~~~~~~~~Veivi~N~---~~~~HP~HLHGh~F~Vlg~G~g~~~~~~-~~~~nl~nP~~RDTv~vp~~------------  476 (539)
T PLN02835        413 MQTSLHDFLEVVFQNN---EKTMQSWHLDGYDFWVVGYGSGQWTPAK-RSLYNLVDALTRHTAQVYPK------------  476 (539)
T ss_pred             EEcCCCCEEEEEEECC---CCCCCCCCCCCccEEEEeccCCCCCccc-ccccCCCCCCccceEEeCCC------------
Confidence            4557789999999998   4678999999999999999999998653 45678999999999999999            


Q ss_pred             cchhhhhhhccccceeEEEEE-eCCCCeeEEEeecchhhhhccceeEEEEEcCcccccccCCCchhHhhccc
Q 041358          154 TCHEQALIHMNMCLHAWVLTD-TCHKKRAWFVHCHLDHHQSWAMQMAFIVKNDRCAKAKMLPPLCELYKLCH  224 (226)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~ir-~adnpG~W~~HCHi~~H~~~Gm~~~~~v~~~~~~~~~~~~~p~~~~~~~~  224 (226)
                                     ||++|| ++||||+|+||||+++|+.+||+++|+|+++.+..++++++|.++++|+.
T Consensus       477 ---------------gw~~IrF~aDNPG~Wl~HCHi~~H~~~Gm~~~~~V~~~~~~~~~~~~~P~~~~~Cg~  533 (539)
T PLN02835        477 ---------------SWTTILVSLDNQGMWNMRSAIWERQYLGQQFYLRVWNQVHSLANEYDIPDNALLCGK  533 (539)
T ss_pred             ---------------CEEEEEEECcCCEEeeeeecchhhhhcccEEEEEEccCCCccccccCCCcccccccc
Confidence                           999999 99999999999999999999999999999988778899999999999974


No 6  
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00  E-value=5.3e-43  Score=336.83  Aligned_cols=196  Identities=42%  Similarity=0.715  Sum_probs=163.3

Q ss_pred             CEEeccCceEEEEEEeCCCCCeeEEEEEeccCCCccCCCCCceEEEEEecCCC-CCCCC-C-CCCCCCCCCC--------
Q 041358            1 YLTISPGQIIDVLIKANQIPNKYYMSAKAHSSATDVYDDNTTTTAIVQYEGLY-PSSKT-P-LPNLPSYDDT--------   69 (226)
Q Consensus         1 ~l~I~pGQRydVLV~a~~~pg~Y~ira~~~~~~~~~~~~~~~~~AILrY~g~~-p~~~~-~-lP~~p~~~d~--------   69 (226)
                      +|.|+|||||||||+|+|.+++|||++.++..+..... +.+..|+|+|.++. +.+.. + .|.+|..+++        
T Consensus       258 ~l~i~~GQ~~~vLvtadq~~~~Y~i~~~~~~~~~~~~~-~~t~~~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~s~~~~~  336 (563)
T KOG1263|consen  258 SLDIHPGQTYSVLLTADQSPGDYYIAASPYFDASNVPF-NLTTTGILRYSGSTHPASEKLPIYPFLPPGNDTAWSTYQAR  336 (563)
T ss_pred             eEEEcCCcEEEEEEeCCCCCCcEEEEEEeeeccCCcce-eeeEEEEEEEeCCcccCcccCcccccCCcccCchhhhhhhh
Confidence            47899999999999999999999999999876543222 67899999999842 11110 0 0000000000        


Q ss_pred             --------------------------------------------------------------------------------
Q 041358           70 --------------------------------------------------------------------------------   69 (226)
Q Consensus        70 --------------------------------------------------------------------------------   69 (226)
                                                                                                      
T Consensus       337 ~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~siN~isf~~P~tp~~l~~~~~~~~~~~~~d~p~~P  416 (563)
T KOG1263|consen  337 SIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDNKNNGKLRASINNISFVTPKTPSLLAAYFKNIPGYFTNDFPDKP  416 (563)
T ss_pred             cccccccccCcccCCCccccccceeeeccEEeccCCCCCCcEEEEEEcceEEECCCCchhhhhhhccCCccccCccCCCC
Confidence                                                                                            


Q ss_pred             -----------cceEEEeecCCEEEEEEEcCCCCCCcCcceeecCceEEEEecCCCCCCCcccc-ccCCCCCCCccceEE
Q 041358           70 -----------KASVKVLEYNTAVEIVFQGTDLLAGTDHPMHLHGYSFYVVGGGFGNFDRAKDA-KRFNFVEPSLQNTIM  137 (226)
Q Consensus        70 -----------~~~~~~~~~g~~v~iv~~n~~~~~~~~HP~HlHG~~f~vv~~g~g~~~~~~~~-~~~n~~~p~~rDtv~  137 (226)
                                 ..+++.+++++.|||+|||.+......||||||||+|||++.|.|+|++.++. ..+|+.+|+.||||.
T Consensus       417 ~~~~~~~~~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G~~~~~~d~~~~yNl~dp~~R~Tv~  496 (563)
T KOG1263|consen  417 PIKFDYTGPTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFGNWDPAKDPRKKYNLVDPVSRDTVQ  496 (563)
T ss_pred             ccccCCccccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEecccccCcCcChhhhcccCCCcccceEE
Confidence                       01157899999999999999877788999999999999999999999996555 789999999999999


Q ss_pred             cCCCCCCCCCCCCCcccchhhhhhhccccceeEEEEE-eCCCCeeEEEeecchhhhhccceeEEEEEcCcccccccCCCc
Q 041358          138 VPKNVNGPKTFKCPKITCHEQALIHMNMCLHAWVLTD-TCHKKRAWFVHCHLDHHQSWAMQMAFIVKNDRCAKAKMLPPL  216 (226)
Q Consensus       138 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir-~adnpG~W~~HCHi~~H~~~Gm~~~~~v~~~~~~~~~~~~~p  216 (226)
                      ||||                           ||++|| .|||||+|++|||+++|+.+||+++|+|.+++....++.++|
T Consensus       497 V~pg---------------------------gw~aIrf~adNPG~W~~HCHie~H~~~G~~~~f~V~~~~~~~~~~~~~P  549 (563)
T KOG1263|consen  497 VPPG---------------------------GWTAIRFVADNPGVWLMHCHIEDHLYLGMETVFIVGNGEESLSSEYPPP  549 (563)
T ss_pred             eCCC---------------------------CEEEEEEEcCCCcEEEEEEecHHHHhccCeEEEEEeCCCccCCcCCCCC
Confidence            9999                           999999 999999999999999999999999999999988888899999


Q ss_pred             hhHhhccc
Q 041358          217 CELYKLCH  224 (226)
Q Consensus       217 ~~~~~~~~  224 (226)
                      .++++|+.
T Consensus       550 ~~~~~cg~  557 (563)
T KOG1263|consen  550 KNLPKCGR  557 (563)
T ss_pred             CCcccccc
Confidence            99999975


No 7  
>PLN02168 copper ion binding / pectinesterase
Probab=100.00  E-value=1.7e-42  Score=333.41  Aligned_cols=120  Identities=22%  Similarity=0.360  Sum_probs=105.9

Q ss_pred             EEeecCCEEEEEEEcCCCCCCcCcceeecCceEEEEecCCCCCCCccccccCCCCCCCccceEEcCCCCCCCCCCCCCcc
Q 041358           74 KVLEYNTAVEIVFQGTDLLAGTDHPMHLHGYSFYVVGGGFGNFDRAKDAKRFNFVEPSLQNTIMVPKNVNGPKTFKCPKI  153 (226)
Q Consensus        74 ~~~~~g~~v~iv~~n~~~~~~~~HP~HlHG~~f~vv~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~~~~~~~~~  153 (226)
                      +.+++|++|||+|+|.   ....||||||||+||||++|.|.|++.. ...+|+.+|++|||+.|+++            
T Consensus       417 ~~~~~~~~VeiViqn~---~~~~HP~HLHGh~F~Vvg~g~g~~~~~~-~~~~Nl~nP~rRDTv~vp~~------------  480 (545)
T PLN02168        417 VDIHYKDFYHIVFQNP---LFSLESYHIDGYNFFVVGYGFGAWSESK-KAGYNLVDAVSRSTVQVYPY------------  480 (545)
T ss_pred             EEecCCCEEEEEEeCC---CCCCCCeeeCCCceEEEECCCCCCCccc-cccCCCCCCCccceEEeCCC------------
Confidence            5677899999999998   3569999999999999999999998653 45689999999999999999            


Q ss_pred             cchhhhhhhccccceeEEEEE-eCCCCeeEEEeecchhhhhccceeEEEEEcCcc------cccccCCCchhHhhccc
Q 041358          154 TCHEQALIHMNMCLHAWVLTD-TCHKKRAWFVHCHLDHHQSWAMQMAFIVKNDRC------AKAKMLPPLCELYKLCH  224 (226)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~ir-~adnpG~W~~HCHi~~H~~~Gm~~~~~v~~~~~------~~~~~~~~p~~~~~~~~  224 (226)
                                     ||++|| ++||||+|+|||||++|+.+||.++|+|+++.+      ..++++++|.++++|+.
T Consensus       481 ---------------Gw~vIRF~aDNPG~Wl~HCHi~~~~h~g~gl~~~v~~~~~e~p~~~~~~~~~~~P~~~~~cg~  543 (545)
T PLN02168        481 ---------------SWTAILIAMDNQGMWNVRSQKAEQWYLGQELYMRVKGEGEEDPSTIPVRDENPIPGNVIRCGK  543 (545)
T ss_pred             ---------------CEEEEEEEccCCeEEeeeecCcccceecCcEEEEEEcccccCccccccccccCCChhhccccc
Confidence                           999999 999999999999999999999999998865443      34567889999999964


No 8  
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00  E-value=2e-42  Score=333.49  Aligned_cols=120  Identities=19%  Similarity=0.266  Sum_probs=107.4

Q ss_pred             EEeecCCEEEEEEEcCCCCCCcCcceeecCceEEEEecCCCCCCCccccccCCCCCCCccceEEcCCCCCCCCCCCCCcc
Q 041358           74 KVLEYNTAVEIVFQGTDLLAGTDHPMHLHGYSFYVVGGGFGNFDRAKDAKRFNFVEPSLQNTIMVPKNVNGPKTFKCPKI  153 (226)
Q Consensus        74 ~~~~~g~~v~iv~~n~~~~~~~~HP~HlHG~~f~vv~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~~~~~~~~~  153 (226)
                      +.+++|++|||+|+|.   ....||||||||+||||++|.|.|+.+. ...+|+.+|++|||+.|+++            
T Consensus       420 ~~~~~~~~VeiVi~n~---~~~~HP~HLHGh~F~Vlg~G~G~~~~~~-~~~~nl~nP~rRDTv~vp~~------------  483 (552)
T PLN02354        420 LNITFRTFVEIIFENH---EKSMQSWHLDGYSFFAVAVEPGTWTPEK-RKNYNLLDAVSRHTVQVYPK------------  483 (552)
T ss_pred             EEcCCCCEEEEEEeCC---CCCCCCCcCCCccEEEEeecCCCCCccc-cccCCcCCCCccceEEeCCC------------
Confidence            4566789999999998   3678999999999999999999998753 55789999999999999999            


Q ss_pred             cchhhhhhhccccceeEEEEE-eCCCCeeEEEeecchhhhhccceeEEEEEcCcccccccCCCchhHhhccc
Q 041358          154 TCHEQALIHMNMCLHAWVLTD-TCHKKRAWFVHCHLDHHQSWAMQMAFIVKNDRCAKAKMLPPLCELYKLCH  224 (226)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~ir-~adnpG~W~~HCHi~~H~~~Gm~~~~~v~~~~~~~~~~~~~p~~~~~~~~  224 (226)
                                     ||++|| ++||||+|+||||+.+|+.+||.++|+|..+....+++.++|.+.+.|+.
T Consensus       484 ---------------Gw~vIRF~aDNPGvW~~HCHi~~H~~~g~~l~~~v~~~~~~~~~~~~~P~~~~~C~~  540 (552)
T PLN02354        484 ---------------SWAAILLTFDNAGMWNIRSENWERRYLGQQLYASVLSPERSLRDEYNMPENALLCGK  540 (552)
T ss_pred             ---------------CeEEEEEEecCCeEEeeeccccccccccceEEEEEeCCccccCcCCCCCcccccccc
Confidence                           999999 99999999999999999999999999998776666677788999999964


No 9  
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00  E-value=5.5e-42  Score=329.86  Aligned_cols=119  Identities=29%  Similarity=0.540  Sum_probs=104.4

Q ss_pred             EEeecCCEEEEEEEcCCCC---CCcCcceeecCceEEEEecCCCCCCCccccccCCCCCCCccceEEcCCCCCCCCCCCC
Q 041358           74 KVLEYNTAVEIVFQGTDLL---AGTDHPMHLHGYSFYVVGGGFGNFDRAKDAKRFNFVEPSLQNTIMVPKNVNGPKTFKC  150 (226)
Q Consensus        74 ~~~~~g~~v~iv~~n~~~~---~~~~HP~HlHG~~f~vv~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~~~~~~  150 (226)
                      +.++.|++|||+|+|....   ....||||||||+||||++|.|.|+.+.+...+|+.+|++|||++|+++         
T Consensus       418 ~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~---------  488 (541)
T TIGR03388       418 YRLKFNTTVDVILQNANTLNGNNSETHPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPY---------  488 (541)
T ss_pred             EEecCCCeEEEEEECCccccCCCCCCCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCC---------
Confidence            5667899999999997421   2468999999999999999999998765556799999999999999999         


Q ss_pred             CcccchhhhhhhccccceeEEEEE-eCCCCeeEEEeecchhhhhccceeEEEEEcCcccccccCCCchhHhhccc
Q 041358          151 PKITCHEQALIHMNMCLHAWVLTD-TCHKKRAWFVHCHLDHHQSWAMQMAFIVKNDRCAKAKMLPPLCELYKLCH  224 (226)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~ir-~adnpG~W~~HCHi~~H~~~Gm~~~~~v~~~~~~~~~~~~~p~~~~~~~~  224 (226)
                                        ||++|| ++||||.|+|||||+||+..||+++|++..     ++++++|.++++|+.
T Consensus       489 ------------------gwvvIRF~adNPG~W~~HCHi~~H~~~GM~~~~~e~~-----~~~~~~P~~~~~C~~  540 (541)
T TIGR03388       489 ------------------GWTALRFVADNPGVWAFHCHIEPHLHMGMGVVFAEGV-----EKVGKLPKEALGCGL  540 (541)
T ss_pred             ------------------ceEEEEEECCCCeEeeeeccchhhhhcccEEEEeccc-----cccCCCCccccCCCC
Confidence                              999999 999999999999999999999999998764     356678999999963


No 10 
>PLN02191 L-ascorbate oxidase
Probab=100.00  E-value=7.3e-42  Score=330.98  Aligned_cols=119  Identities=29%  Similarity=0.552  Sum_probs=102.5

Q ss_pred             EEeecCCEEEEEEEcCCCC---CCcCcceeecCceEEEEecCCCCCCCccccccCCCCCCCccceEEcCCCCCCCCCCCC
Q 041358           74 KVLEYNTAVEIVFQGTDLL---AGTDHPMHLHGYSFYVVGGGFGNFDRAKDAKRFNFVEPSLQNTIMVPKNVNGPKTFKC  150 (226)
Q Consensus        74 ~~~~~g~~v~iv~~n~~~~---~~~~HP~HlHG~~f~vv~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~~~~~~  150 (226)
                      +.++.|++|||+|+|.+..   ....||||||||+||||++|.|.|+++.+...+|+.+|++|||+.|+++         
T Consensus       441 ~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~---------  511 (574)
T PLN02191        441 YVFPFNVTVDVIIQNANVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPY---------  511 (574)
T ss_pred             EEecCCCEEEEEEECCCcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCC---------
Confidence            3455699999999997421   2678999999999999999999999765556789999999999999999         


Q ss_pred             CcccchhhhhhhccccceeEEEEE-eCCCCeeEEEeecchhhhhccceeEEEEEcCcccccccCCCchhHhhccc
Q 041358          151 PKITCHEQALIHMNMCLHAWVLTD-TCHKKRAWFVHCHLDHHQSWAMQMAFIVKNDRCAKAKMLPPLCELYKLCH  224 (226)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~ir-~adnpG~W~~HCHi~~H~~~Gm~~~~~v~~~~~~~~~~~~~p~~~~~~~~  224 (226)
                                        ||++|| ++||||+|+|||||+||+++||+++|++..+     .++++|.++..|+.
T Consensus       512 ------------------Gw~vIRf~aDNPG~Wl~HCHi~~Hl~~Gm~~~~~e~~~-----~~~~~p~~~~~C~~  563 (574)
T PLN02191        512 ------------------GWTAIRFVTDNPGVWFFHCHIEPHLHMGMGVVFAEGLN-----RIGKIPDEALGCGL  563 (574)
T ss_pred             ------------------CEEEEEEECCCCEEEEEecCchhhhhcCCEEEEecChh-----hccCCCcchhhhhc
Confidence                              999999 9999999999999999999999999987653     33446788888864


No 11 
>PLN02604 oxidoreductase
Probab=100.00  E-value=3.5e-41  Score=325.80  Aligned_cols=119  Identities=28%  Similarity=0.565  Sum_probs=104.9

Q ss_pred             EEeecCCEEEEEEEcCCCC---CCcCcceeecCceEEEEecCCCCCCCccccccCCCCCCCccceEEcCCCCCCCCCCCC
Q 041358           74 KVLEYNTAVEIVFQGTDLL---AGTDHPMHLHGYSFYVVGGGFGNFDRAKDAKRFNFVEPSLQNTIMVPKNVNGPKTFKC  150 (226)
Q Consensus        74 ~~~~~g~~v~iv~~n~~~~---~~~~HP~HlHG~~f~vv~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~~~~~~  150 (226)
                      +.++.|++|||+|+|....   ....||||||||+||||++|.|.|+...+...+|+.+|++|||++|+++         
T Consensus       441 ~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~---------  511 (566)
T PLN02604        441 YRLQFNSTVDIILQNANTMNANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPY---------  511 (566)
T ss_pred             EEccCCCeEEEEEECCccccCCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCC---------
Confidence            5667799999999997411   2568999999999999999999998776666799999999999999999         


Q ss_pred             CcccchhhhhhhccccceeEEEEE-eCCCCeeEEEeecchhhhhccceeEEEEEcCcccccccCCCchhHhhccc
Q 041358          151 PKITCHEQALIHMNMCLHAWVLTD-TCHKKRAWFVHCHLDHHQSWAMQMAFIVKNDRCAKAKMLPPLCELYKLCH  224 (226)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~ir-~adnpG~W~~HCHi~~H~~~Gm~~~~~v~~~~~~~~~~~~~p~~~~~~~~  224 (226)
                                        ||++|| ++||||.|+|||||+||+..||+++|++..     +.++++|..+++|++
T Consensus       512 ------------------gwvvIRF~aDNPG~WlfHCHI~~Hl~~GM~~v~~e~~-----~~~~~~p~~~~~C~~  563 (566)
T PLN02604        512 ------------------GWTALRFRADNPGVWAFHCHIESHFFMGMGVVFEEGI-----ERVGKLPSSIMGCGE  563 (566)
T ss_pred             ------------------ceEEEEEECCCCeEeeEeecchhHhhcCCEEEEeeCh-----hhccCCCCCcCcccc
Confidence                              999999 999999999999999999999999998764     356678889999865


No 12 
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00  E-value=3.9e-38  Score=303.05  Aligned_cols=115  Identities=24%  Similarity=0.447  Sum_probs=92.4

Q ss_pred             EEEeecCCEEEEEEEcCCC-----CCCcCcceeecCceEEEEecCCCCCCCccccccCCCCCCCccceEEcCCCCCCCCC
Q 041358           73 VKVLEYNTAVEIVFQGTDL-----LAGTDHPMHLHGYSFYVVGGGFGNFDRAKDAKRFNFVEPSLQNTIMVPKNVNGPKT  147 (226)
Q Consensus        73 ~~~~~~g~~v~iv~~n~~~-----~~~~~HP~HlHG~~f~vv~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~~~  147 (226)
                      ++.++.|++|||+|+|...     .....||||||||+||||++|.|.|+++.+...+|+.+|++|||++|++...    
T Consensus       413 ~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~----  488 (538)
T TIGR03390       413 AFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAV----  488 (538)
T ss_pred             EEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeeccccc----
Confidence            4557789999999999741     1257899999999999999999999976544567888999999999972200    


Q ss_pred             CCCCcccchhhhhhhccccceeEEEEE-eCCCCeeEEEeecchhhhhccceeEEEEEc
Q 041358          148 FKCPKITCHEQALIHMNMCLHAWVLTD-TCHKKRAWFVHCHLDHHQSWAMQMAFIVKN  204 (226)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~ir-~adnpG~W~~HCHi~~H~~~Gm~~~~~v~~  204 (226)
                             ++     .+ ....||++|| ++||||+|+|||||+||+++||+++|+|.+
T Consensus       489 -------~~-----~~-~~~~~~~~ir~~~dNPG~W~~HCHi~~H~~~Gm~~~~~~~~  533 (538)
T TIGR03390       489 -------KV-----VP-GAPAGWRAWRIRVTNPGVWMMHCHILQHMVMGMQTVWVFGD  533 (538)
T ss_pred             -------cc-----cc-cCCCceEEEEEEcCCCeeEEEeccchhhhhccceEEEEeCC
Confidence                   00     00 0012999999 999999999999999999999999999875


No 13 
>PF07731 Cu-oxidase_2:  Multicopper oxidase;  InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include:   Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase.  Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ].   In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08.  This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.96  E-value=2.7e-29  Score=199.79  Aligned_cols=102  Identities=33%  Similarity=0.672  Sum_probs=91.1

Q ss_pred             eEEEeecCCEEEEEEEcCCCCCCcCcceeecCceEEEEecCCCCCCCccccccCCCCCCCccceEEcCCCCCCCCCCCCC
Q 041358           72 SVKVLEYNTAVEIVFQGTDLLAGTDHPMHLHGYSFYVVGGGFGNFDRAKDAKRFNFVEPSLQNTIMVPKNVNGPKTFKCP  151 (226)
Q Consensus        72 ~~~~~~~g~~v~iv~~n~~~~~~~~HP~HlHG~~f~vv~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~~~~~~~  151 (226)
                      ..+.++.|++|||+|+|.   +...||||+||++|++++.+.+.++.. ....+++.+|.+|||+.|+++          
T Consensus        34 ~~~~~~~g~~v~~~l~N~---~~~~Hp~HlHG~~F~vl~~~~~~~~~~-~~~~~~~~~~~~~DTv~v~~~----------   99 (138)
T PF07731_consen   34 PVIEVKNGDVVEIVLQNN---GSMPHPFHLHGHSFQVLGRGGGPWNPD-DTQSYNPENPGWRDTVLVPPG----------   99 (138)
T ss_dssp             SEEEEETTSEEEEEEEEC---TTSSEEEEETTSEEEEEEETTEESTTH-CGGCCCSSSSSEESEEEEETT----------
T ss_pred             ceEEEeCCCEEEEEEECC---CCCccceEEEeeEEEeeecCCcccccc-cccccccccCcccccccccce----------
Confidence            489999999999999998   578999999999999999986655433 345678889999999999999          


Q ss_pred             cccchhhhhhhccccceeEEEEE-eCCCCeeEEEeecchhhhhccceeEEEEEc
Q 041358          152 KITCHEQALIHMNMCLHAWVLTD-TCHKKRAWFVHCHLDHHQSWAMQMAFIVKN  204 (226)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~ir-~adnpG~W~~HCHi~~H~~~Gm~~~~~v~~  204 (226)
                                       +|++|| .++|||.|+||||+++|++.||++.|+|.+
T Consensus       100 -----------------~~~~i~~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~  136 (138)
T PF07731_consen  100 -----------------GWVVIRFRADNPGPWLFHCHILEHEDNGMMAVFVVGP  136 (138)
T ss_dssp             -----------------EEEEEEEEETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred             -----------------eEEEEEEEeecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence                             999999 999999999999999999999999999875


No 14 
>PRK10965 multicopper oxidase; Provisional
Probab=99.92  E-value=3.6e-24  Score=205.83  Aligned_cols=93  Identities=25%  Similarity=0.389  Sum_probs=73.6

Q ss_pred             EEEeecCCEEEEEEEcCCCCCCcCcceeecCceEEEEecCCCCCCCccccccCCCCCCCccceEEcCCCCCCCCCCCCCc
Q 041358           73 VKVLEYNTAVEIVFQGTDLLAGTDHPMHLHGYSFYVVGGGFGNFDRAKDAKRFNFVEPSLQNTIMVPKNVNGPKTFKCPK  152 (226)
Q Consensus        73 ~~~~~~g~~v~iv~~n~~~~~~~~HP~HlHG~~f~vv~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~~~~~~~~  152 (226)
                      .+.++.|++++|.|.|.+  ....|||||||++|+|+++. |.        .....++.|||||.|+++.          
T Consensus       427 ~~~~~~G~~e~w~i~N~~--~~~~Hp~HlHg~~F~Vl~~~-g~--------~~~~~~~~wkDTv~v~~~~----------  485 (523)
T PRK10965        427 MFAAKKGQYERWVISGVG--DMMLHPFHIHGTQFRILSEN-GK--------PPAAHRAGWKDTVRVEGGR----------  485 (523)
T ss_pred             ceecCCCCEEEEEEEeCC--CCCccCeEEeCcEEEEEEec-CC--------CCCccccccccEEEECCcE----------
Confidence            356899999999999983  23689999999999999874 21        1112346799999998761          


Q ss_pred             ccchhhhhhhccccceeEEEEE---eCCCCeeEEEeecchhhhhccceeEEEE
Q 041358          153 ITCHEQALIHMNMCLHAWVLTD---TCHKKRAWFVHCHLDHHQSWAMQMAFIV  202 (226)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~ir---~adnpG~W~~HCHi~~H~~~Gm~~~~~v  202 (226)
                                      .-++++   .++++|.|+||||+++|++.|||..|.|
T Consensus       486 ----------------~~i~~~f~~~~~~~g~~~~HCHiL~Hed~GMM~~~~V  522 (523)
T PRK10965        486 ----------------SEVLVKFDHDAPKEHAYMAHCHLLEHEDTGMMLGFTV  522 (523)
T ss_pred             ----------------EEEEEEecCCCCCCCCEEEEeCchhhhccCccceeEe
Confidence                            334444   3678999999999999999999999987


No 15 
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.92  E-value=4.4e-24  Score=207.49  Aligned_cols=86  Identities=24%  Similarity=0.342  Sum_probs=76.5

Q ss_pred             EEEeecCCEEEEEEEcCCCCCCcCcceeecCceEEEEecCCCCCCCccccccCCCCCCCccceEEcCCCCCCCCCCCCCc
Q 041358           73 VKVLEYNTAVEIVFQGTDLLAGTDHPMHLHGYSFYVVGGGFGNFDRAKDAKRFNFVEPSLQNTIMVPKNVNGPKTFKCPK  152 (226)
Q Consensus        73 ~~~~~~g~~v~iv~~n~~~~~~~~HP~HlHG~~f~vv~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~~~~~~~~  152 (226)
                      .+.++.|++|+|+|.|.   +...||||+|||.|+++..+ |.             .+.++||+.|+||           
T Consensus       500 pl~v~~Gervri~l~N~---t~~~HpmHlHG~~f~v~~~~-G~-------------~~~~~dTv~V~Pg-----------  551 (587)
T TIGR01480       500 PLRFNYGERLRVVLVND---TMMAHPIHLHGMWSELEDGQ-GE-------------FQVRKHTVDVPPG-----------  551 (587)
T ss_pred             ceEecCCCEEEEEEECC---CCCCcceeEcCceeeeecCC-Cc-------------ccccCCceeeCCC-----------
Confidence            57799999999999998   68999999999999998643 21             1457899999999           


Q ss_pred             ccchhhhhhhccccceeEEEEE-eCCCCeeEEEeecchhhhhccceeEEEE
Q 041358          153 ITCHEQALIHMNMCLHAWVLTD-TCHKKRAWFVHCHLDHHQSWAMQMAFIV  202 (226)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~ir-~adnpG~W~~HCHi~~H~~~Gm~~~~~v  202 (226)
                                      +.+.++ .+||||.|+||||++.|+..||+..|.|
T Consensus       552 ----------------~t~~~~f~ad~pG~w~~HCH~l~H~~~GM~~~~~v  586 (587)
T TIGR01480       552 ----------------GKRSFRVTADALGRWAYHCHMLLHMEAGMFREVTV  586 (587)
T ss_pred             ----------------CEEEEEEECCCCeEEEEcCCCHHHHhCcCcEEEEe
Confidence                            778999 9999999999999999999999999987


No 16 
>PRK10883 FtsI repressor; Provisional
Probab=99.89  E-value=2.8e-22  Score=190.60  Aligned_cols=89  Identities=9%  Similarity=-0.008  Sum_probs=71.7

Q ss_pred             EEEeecCCEEEEEEEcCCCCCCcCcceeecCceEEEEecCCCCCCCccccccCCCCCCCccceEEcCCCCCCCCCCCCCc
Q 041358           73 VKVLEYNTAVEIVFQGTDLLAGTDHPMHLHGYSFYVVGGGFGNFDRAKDAKRFNFVEPSLQNTIMVPKNVNGPKTFKCPK  152 (226)
Q Consensus        73 ~~~~~~g~~v~iv~~n~~~~~~~~HP~HlHG~~f~vv~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~~~~~~~~  152 (226)
                      .+.++.|++++|+|.|.     ..|||||||+.|+|++++...         ....+..|||||.|+ +           
T Consensus       376 ~~~~~~g~~e~W~~~n~-----~~HP~HlHg~~FqVl~~~G~~---------~~~~~~gwkDTV~v~-~-----------  429 (471)
T PRK10883        376 DVTAQQGTWERWTVRAD-----MPQAFHIEGVMFLIRNVNGAM---------PFPEDRGWKDTVWVD-G-----------  429 (471)
T ss_pred             eeecCCCCEEEEEEECC-----CCcCEeECCccEEEEEecCCC---------CCccccCcCcEEEcC-C-----------
Confidence            35789999999999885     479999999999999874210         111224689999995 4           


Q ss_pred             ccchhhhhhhccccceeEEEEE-eCCCCe----eEEEeecchhhhhccceeEEEEEc
Q 041358          153 ITCHEQALIHMNMCLHAWVLTD-TCHKKR----AWFVHCHLDHHQSWAMQMAFIVKN  204 (226)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~ir-~adnpG----~W~~HCHi~~H~~~Gm~~~~~v~~  204 (226)
                                      . +.|+ +.+++|    .|||||||++|++.|||..|.|.+
T Consensus       430 ----------------~-v~i~~~f~~~~~~~~~~m~HCHiLeHeD~GMM~~~~V~~  469 (471)
T PRK10883        430 ----------------Q-VELLVYFGQPSWAHFPFLFYSQTLEMADRGSIGQLLVNP  469 (471)
T ss_pred             ----------------e-EEEEEEecCCCCCCCcEEeecccccccccCCccCeEEec
Confidence                            2 6777 788887    899999999999999999999964


No 17 
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.87  E-value=4.9e-21  Score=180.69  Aligned_cols=91  Identities=25%  Similarity=0.422  Sum_probs=80.4

Q ss_pred             EEEeecCCEEEEEEEcCCCCCCcCcceeecCceEEEEecCCCCCCCccccccCCCCCCCccceEEcCCCCCCCCCCCCCc
Q 041358           73 VKVLEYNTAVEIVFQGTDLLAGTDHPMHLHGYSFYVVGGGFGNFDRAKDAKRFNFVEPSLQNTIMVPKNVNGPKTFKCPK  152 (226)
Q Consensus        73 ~~~~~~g~~v~iv~~n~~~~~~~~HP~HlHG~~f~vv~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~~~~~~~~  152 (226)
                      ...++.|++++|+|.|.   +...||||+||+.|+|+..+ ..         +....+.+|||+.+.++           
T Consensus       358 ~~~~~~G~~~~~~i~n~---~~~~HP~HlHg~~F~v~~~~-~~---------~~~~~~~~kDTv~v~~~-----------  413 (451)
T COG2132         358 TLIAKAGTRERWVLTND---TPMPHPFHLHGHFFQVLSGD-AP---------APGAAPGWKDTVLVAPG-----------  413 (451)
T ss_pred             ceeecCCCEEEEEEECC---CCCccCeEEcCceEEEEecC-CC---------cccccCccceEEEeCCC-----------
Confidence            67899999999999998   46999999999999999886 11         11234789999999999           


Q ss_pred             ccchhhhhhhccccceeEEEEE-eCCCCeeEEEeecchhhhhccceeEEEEE
Q 041358          153 ITCHEQALIHMNMCLHAWVLTD-TCHKKRAWFVHCHLDHHQSWAMQMAFIVK  203 (226)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~ir-~adnpG~W~~HCHi~~H~~~Gm~~~~~v~  203 (226)
                                      ..+.++ .+++||.|+||||+++|++.||+..+.|.
T Consensus       414 ----------------~~~~v~~~a~~~g~~~~HCH~l~H~~~Gm~~~~~v~  449 (451)
T COG2132         414 ----------------ERLLVRFDADYPGPWMFHCHILEHEDNGMMGQFGVV  449 (451)
T ss_pred             ----------------eEEEEEEeCCCCCceEEeccchhHhhcCCeeEEEec
Confidence                            779999 99999999999999999999999999875


No 18 
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=99.07  E-value=6.9e-10  Score=100.84  Aligned_cols=83  Identities=16%  Similarity=0.142  Sum_probs=65.4

Q ss_pred             EEEeecCCEEEEEEEcCCCCCCcCcceeecCceEEEEecCCCCCCCccccccCCCCCCCccceEEcCCCCCCCCCCCCCc
Q 041358           73 VKVLEYNTAVEIVFQGTDLLAGTDHPMHLHGYSFYVVGGGFGNFDRAKDAKRFNFVEPSLQNTIMVPKNVNGPKTFKCPK  152 (226)
Q Consensus        73 ~~~~~~g~~v~iv~~n~~~~~~~~HP~HlHG~~f~vv~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~~~~~~~~  152 (226)
                      .++++.|++|+|.+.|.. .....|++|+||+..    .+ |             . +   .+..|+||           
T Consensus        60 ~irv~~Gd~v~v~v~N~~-~~~~~h~~h~H~~~~----~d-g-------------~-~---~~~~I~PG-----------  105 (311)
T TIGR02376        60 LIRVHEGDYVELTLINPP-TNTMPHNVDFHAATG----AL-G-------------G-A---ALTQVNPG-----------  105 (311)
T ss_pred             eEEEECCCEEEEEEEeCC-CCCCceeeeecCCCc----cC-C-------------C-C---cceeECCC-----------
Confidence            688999999999999973 113689999999631    11 1             0 1   23458899           


Q ss_pred             ccchhhhhhhccccceeEEEEE-eCCCCeeEEEeec----chhhhhccceeEEEEEcC
Q 041358          153 ITCHEQALIHMNMCLHAWVLTD-TCHKKRAWFVHCH----LDHHQSWAMQMAFIVKND  205 (226)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~ir-~adnpG~W~~HCH----i~~H~~~Gm~~~~~v~~~  205 (226)
                                      +...++ .+++||.|+||||    +..|...||+..|+|.+.
T Consensus       106 ----------------~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~  147 (311)
T TIGR02376       106 ----------------ETATLRFKATRPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPR  147 (311)
T ss_pred             ----------------CeEEEEEEcCCCEEEEEEcCCCCchhHHhhcCcceEEEeecc
Confidence                            557788 8999999999999    578999999999999864


No 19 
>PLN02604 oxidoreductase
Probab=98.90  E-value=1.6e-08  Score=98.74  Aligned_cols=89  Identities=11%  Similarity=0.134  Sum_probs=67.7

Q ss_pred             EEEeecCCEEEEEEEcCCCCCCcCcceeecCceEEEEecCCCCCCCccccccCCCCCCCccceEEcCCCCCCCCCCCCCc
Q 041358           73 VKVLEYNTAVEIVFQGTDLLAGTDHPMHLHGYSFYVVGGGFGNFDRAKDAKRFNFVEPSLQNTIMVPKNVNGPKTFKCPK  152 (226)
Q Consensus        73 ~~~~~~g~~v~iv~~n~~~~~~~~HP~HlHG~~f~vv~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~~~~~~~~  152 (226)
                      +++++.|++|+|.+.|..  ....|+||+||...  .+.  ...|.           ........|+||           
T Consensus        56 ~i~~~~Gd~v~v~v~N~l--~~~~~~iH~HG~~~--~~~--~~~DG-----------~~~~tq~~i~pg-----------  107 (566)
T PLN02604         56 TILAQQGDTVIVELKNSL--LTENVAIHWHGIRQ--IGT--PWFDG-----------TEGVTQCPILPG-----------  107 (566)
T ss_pred             cEEEECCCEEEEEEEeCC--CCCCCCEEeCCCCC--CCC--ccccC-----------CCccccCccCCC-----------
Confidence            588999999999999972  25689999999942  111  00011           112234567888           


Q ss_pred             ccchhhhhhhccccceeEEEEE-eCCCCeeEEEeecchhhhhccceeEEEEEcC
Q 041358          153 ITCHEQALIHMNMCLHAWVLTD-TCHKKRAWFVHCHLDHHQSWAMQMAFIVKND  205 (226)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~ir-~adnpG~W~~HCHi~~H~~~Gm~~~~~v~~~  205 (226)
                                      +....+ .++++|.|.||||...|...||...|+|.++
T Consensus       108 ----------------~s~~y~f~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~  145 (566)
T PLN02604        108 ----------------ETFTYEFVVDRPGTYLYHAHYGMQREAGLYGSIRVSLP  145 (566)
T ss_pred             ----------------CeEEEEEEcCCCEEEEEeeCcHHHHhCCCeEEEEEEec
Confidence                            557778 8999999999999999999999999999864


No 20 
>PF07732 Cu-oxidase_3:  Multicopper oxidase;  InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include:   Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase.  Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ].   In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08.  This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=98.72  E-value=5e-08  Score=76.81  Aligned_cols=88  Identities=15%  Similarity=0.157  Sum_probs=61.8

Q ss_pred             EEEeecCCEEEEEEEcCCCCCCcCcceeecCceEEEEecCCCCCCCccccccCCCCCCCccceEEcCCCCCCCCCCCCCc
Q 041358           73 VKVLEYNTAVEIVFQGTDLLAGTDHPMHLHGYSFYVVGGGFGNFDRAKDAKRFNFVEPSLQNTIMVPKNVNGPKTFKCPK  152 (226)
Q Consensus        73 ~~~~~~g~~v~iv~~n~~~~~~~~HP~HlHG~~f~vv~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~~~~~~~~  152 (226)
                      +++++.|+.|+|.+.|.   ....+.+|.||.....-     .|.   |.....   +    .-.|.||           
T Consensus        27 tI~v~~Gd~v~i~~~N~---l~~~~siH~HG~~~~~~-----~~~---DG~~~~---~----~~~i~pG-----------   77 (117)
T PF07732_consen   27 TIRVREGDTVRITVTNN---LDEPTSIHWHGLHQPPS-----PWM---DGVPGV---T----QCPIAPG-----------   77 (117)
T ss_dssp             EEEEETTEEEEEEEEEE---SSSGBSEEEETSBSTTG-----GGG---SGGTTT---S----GSSBSTT-----------
T ss_pred             EEEEEcCCeeEEEEEec---cccccccccceeeeeee-----eec---CCcccc---c----ceeEEee-----------
Confidence            79999999999999998   47889999999653110     000   000000   0    0135666           


Q ss_pred             ccchhhhhhhccccceeEEEEE-eCCC-CeeEEEeecchhhhhccceeEEEEEcC
Q 041358          153 ITCHEQALIHMNMCLHAWVLTD-TCHK-KRAWFVHCHLDHHQSWAMQMAFIVKND  205 (226)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~ir-~adn-pG~W~~HCHi~~H~~~Gm~~~~~v~~~  205 (226)
                                      +-...+ .+.. +|.+.||||...|...||...|+|+++
T Consensus        78 ----------------~~~~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~  116 (117)
T PF07732_consen   78 ----------------ESFTYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPP  116 (117)
T ss_dssp             ----------------EEEEEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred             ----------------cceeeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence                            334555 6666 999999999999888999999999863


No 21 
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=98.59  E-value=2.6e-07  Score=84.06  Aligned_cols=90  Identities=17%  Similarity=0.085  Sum_probs=70.7

Q ss_pred             EEeecCCEEEEEEEcCCCCCCcCcceeecCceEEEEecCCCCCCCccccccCCCCCCC-ccceEEcCCCCCCCCCCCCCc
Q 041358           74 KVLEYNTAVEIVFQGTDLLAGTDHPMHLHGYSFYVVGGGFGNFDRAKDAKRFNFVEPS-LQNTIMVPKNVNGPKTFKCPK  152 (226)
Q Consensus        74 ~~~~~g~~v~iv~~n~~~~~~~~HP~HlHG~~f~vv~~g~g~~~~~~~~~~~n~~~p~-~rDtv~v~~~~~~~~~~~~~~  152 (226)
                      ..++.|++++|+|.|.+  ....+.||++|+.|+++... |.+        +  ..+. ..|++.|.||           
T Consensus       204 ~~v~~G~~~RlRiiNa~--~~~~~~~~~~g~~~~~v~~D-G~~--------~--~~~~~~~~~~~i~PG-----------  259 (311)
T TIGR02376       204 NALTAGVGERVLFVHSQ--PNRDSRPHLIGGHGDYVWVT-GKF--------A--NPPNRDVETWFIPGG-----------  259 (311)
T ss_pred             cccccCCcEEEEEEcCC--CCCCCCCeEecCCceEEEEC-Ccc--------c--CCCCCCcceEEECCC-----------
Confidence            46899999999999985  45778999999999999873 321        1  1122 3689999999           


Q ss_pred             ccchhhhhhhccccceeEEEEE-eCCCCeeEEEeecchhhh-hccceeEEEEE
Q 041358          153 ITCHEQALIHMNMCLHAWVLTD-TCHKKRAWFVHCHLDHHQ-SWAMQMAFIVK  203 (226)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~ir-~adnpG~W~~HCHi~~H~-~~Gm~~~~~v~  203 (226)
                                      ....+. ++++||.|.+|||...|. ..|++..|.+.
T Consensus       260 ----------------~R~dv~v~~~~pG~y~~~~~~~~~~~~~g~~~~i~~~  296 (311)
T TIGR02376       260 ----------------SAAAALYTFEQPGVYAYVDHNLIEAFEKGAAAQVKVE  296 (311)
T ss_pred             ----------------ceEEEEEEeCCCeEEEEECcHHHHHHhCCCEEEEEEC
Confidence                            334555 788899999999999887 77988888764


No 22 
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=98.53  E-value=1.3e-06  Score=84.88  Aligned_cols=89  Identities=11%  Similarity=0.115  Sum_probs=65.6

Q ss_pred             EEEeecCCEEEEEEEcCCCCCCcCcceeecCceEEEEecCCCCCCCccccccCCCCCCCccceEEcCCCCCCCCCCCCCc
Q 041358           73 VKVLEYNTAVEIVFQGTDLLAGTDHPMHLHGYSFYVVGGGFGNFDRAKDAKRFNFVEPSLQNTIMVPKNVNGPKTFKCPK  152 (226)
Q Consensus        73 ~~~~~~g~~v~iv~~n~~~~~~~~HP~HlHG~~f~vv~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~~~~~~~~  152 (226)
                      .++++.|+.|+|.+.|.-  ....+.+|+||...    .+. .|.          +.........|+||           
T Consensus        33 ~i~~~~Gd~v~v~v~N~l--~~~~t~iHwHGl~~----~~~-~~~----------DG~~~vtq~~I~PG-----------   84 (541)
T TIGR03388        33 TIRAQAGDTIVVELTNKL--HTEGVVIHWHGIRQ----IGT-PWA----------DGTAGVTQCAINPG-----------   84 (541)
T ss_pred             eEEEEcCCEEEEEEEECC--CCCCccEEecCcCC----cCC-ccc----------CCCCccccCCcCCC-----------
Confidence            688999999999999972  24679999999842    111 000          00111122356788           


Q ss_pred             ccchhhhhhhccccceeEEEEE-eCCCCeeEEEeecchhhhhccceeEEEEEcC
Q 041358          153 ITCHEQALIHMNMCLHAWVLTD-TCHKKRAWFVHCHLDHHQSWAMQMAFIVKND  205 (226)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~ir-~adnpG~W~~HCHi~~H~~~Gm~~~~~v~~~  205 (226)
                                      +....+ .++++|.|.||||...|...||...|+|.++
T Consensus        85 ----------------~s~~y~f~~~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~  122 (541)
T TIGR03388        85 ----------------ETFIYNFVVDRPGTYFYHGHYGMQRSAGLYGSLIVDVP  122 (541)
T ss_pred             ----------------CEEEEEEEcCCCEEEEEEecchHHhhccceEEEEEecC
Confidence                            446667 8899999999999999999999999999865


No 23 
>PF00394 Cu-oxidase:  Multicopper oxidase;  InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include:   Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase.  Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ].   In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=98.21  E-value=7.5e-06  Score=67.10  Aligned_cols=91  Identities=13%  Similarity=0.158  Sum_probs=70.9

Q ss_pred             eEEEeecCCEEEEEEEcCCCCCCcCcceeecCceEEEEecCCCCCCCccccccCCCCCCCccceEEcCCCCCCCCCCCCC
Q 041358           72 SVKVLEYNTAVEIVFQGTDLLAGTDHPMHLHGYSFYVVGGGFGNFDRAKDAKRFNFVEPSLQNTIMVPKNVNGPKTFKCP  151 (226)
Q Consensus        72 ~~~~~~~g~~v~iv~~n~~~~~~~~HP~HlHG~~f~vv~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~~~~~~~  151 (226)
                      .++.++.|++++|+|.|.+  ....+.|++.||+|+|++.. |.           +..|...|++.|.+|          
T Consensus        60 ~~~~v~~g~~~rlRliNa~--~~~~~~~~i~gh~~~Via~D-G~-----------~v~p~~~~~l~l~~G----------  115 (159)
T PF00394_consen   60 PVIKVKPGERYRLRLINAG--ASTSFNFSIDGHPMTVIAAD-GV-----------PVEPYKVDTLVLAPG----------  115 (159)
T ss_dssp             GEEEEETTTEEEEEEEEES--SS-BEEEEETTBCEEEEEET-TE-----------EEEEEEESBEEE-TT----------
T ss_pred             ceEEEcCCcEEEEEEEecc--CCeeEEEEeeccceeEeeec-cc-----------cccccccceEEeeCC----------
Confidence            4899999999999999986  56789999999999999874 31           123788899999999          


Q ss_pred             cccchhhhhhhccccceeEEEEE-eCCC-CeeEEEee----cchhhhhccceeEEEEE
Q 041358          152 KITCHEQALIHMNMCLHAWVLTD-TCHK-KRAWFVHC----HLDHHQSWAMQMAFIVK  203 (226)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~ir-~adn-pG~W~~HC----Hi~~H~~~Gm~~~~~v~  203 (226)
                                       ..+.+. +++. +|.|.+++    +...+...|+...+++-
T Consensus       116 -----------------~R~dvlv~~~~~~g~y~i~~~~~~~~~~~~~~~~~~aiL~Y  156 (159)
T PF00394_consen  116 -----------------QRYDVLVTADQPPGNYWIRASYQHDSINDPQNGNALAILRY  156 (159)
T ss_dssp             -----------------EEEEEEEEECSCSSEEEEEEEESSSSSHSHGGGTTEEEEEE
T ss_pred             -----------------eEEEEEEEeCCCCCeEEEEEecccCCCccCCCcEEEEEEEE
Confidence                             334444 6665 99999999    55677788888777654


No 24 
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=98.07  E-value=2.9e-05  Score=63.72  Aligned_cols=34  Identities=15%  Similarity=0.217  Sum_probs=29.5

Q ss_pred             EEEEE-eCCCCeeEEEeecchhhhhccceeEEEEE
Q 041358          170 WVLTD-TCHKKRAWFVHCHLDHHQSWAMQMAFIVK  203 (226)
Q Consensus       170 ~~~ir-~adnpG~W~~HCHi~~H~~~Gm~~~~~v~  203 (226)
                      |..+. +++.+|...||||+..|...||...|+|+
T Consensus       114 ~~~~tf~f~~aGtywyhC~~pgH~~~GM~G~iiV~  148 (148)
T TIGR03095       114 YTDFTYHFSTAGTYWYLCTYPGHAENGMYGKIVVK  148 (148)
T ss_pred             eeEEEEECCCCeEEEEEcCChhHHHCCCEEEEEEC
Confidence            44556 77899999999999999999999999873


No 25 
>PLN02191 L-ascorbate oxidase
Probab=98.01  E-value=2.3e-05  Score=76.87  Aligned_cols=89  Identities=15%  Similarity=0.074  Sum_probs=64.7

Q ss_pred             EEEeecCCEEEEEEEcCCCCCCcCcceeecCceEEEEecCCCCCCCccccccCCCCCCCccceEEcCCCCCCCCCCCCCc
Q 041358           73 VKVLEYNTAVEIVFQGTDLLAGTDHPMHLHGYSFYVVGGGFGNFDRAKDAKRFNFVEPSLQNTIMVPKNVNGPKTFKCPK  152 (226)
Q Consensus        73 ~~~~~~g~~v~iv~~n~~~~~~~~HP~HlHG~~f~vv~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~~~~~~~~  152 (226)
                      +++++.|+.|+|.+.|.-  ....+.+|.||....    +....|.           ....-...|+||           
T Consensus        55 ~i~~~~Gd~v~v~v~N~l--~~~~tsiHwHGl~~~----~~~~~DG-----------v~gvtq~pI~PG-----------  106 (574)
T PLN02191         55 TIDAVAGDTIVVHLTNKL--TTEGLVIHWHGIRQK----GSPWADG-----------AAGVTQCAINPG-----------  106 (574)
T ss_pred             eEEEEcCCEEEEEEEECC--CCCCccEECCCCCCC----CCccccC-----------CCccccCCcCCC-----------
Confidence            689999999999999972  346799999998621    1100010           001111347788           


Q ss_pred             ccchhhhhhhccccceeEEEEE-eCCCCeeEEEeecchhhhhccceeEEEEEcC
Q 041358          153 ITCHEQALIHMNMCLHAWVLTD-TCHKKRAWFVHCHLDHHQSWAMQMAFIVKND  205 (226)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~ir-~adnpG~W~~HCHi~~H~~~Gm~~~~~v~~~  205 (226)
                                      +....+ .++.+|.+.||||...+...||...|+|.+.
T Consensus       107 ----------------~s~~Y~f~~~~~GT~wYHsH~~~q~~~Gl~G~liV~~~  144 (574)
T PLN02191        107 ----------------ETFTYKFTVEKPGTHFYHGHYGMQRSAGLYGSLIVDVA  144 (574)
T ss_pred             ----------------CeEEEEEECCCCeEEEEeeCcHHHHhCCCEEEEEEccC
Confidence                            446667 8899999999999999999999999999753


No 26 
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=97.91  E-value=0.00015  Score=71.40  Aligned_cols=86  Identities=13%  Similarity=0.174  Sum_probs=64.2

Q ss_pred             EEEeecCCEEEEEEEcCCCCCCcCcceeecCceEEEEecCCCCCCCccccccCCCCCCCccceEEcCCCCCCCCCCCCCc
Q 041358           73 VKVLEYNTAVEIVFQGTDLLAGTDHPMHLHGYSFYVVGGGFGNFDRAKDAKRFNFVEPSLQNTIMVPKNVNGPKTFKCPK  152 (226)
Q Consensus        73 ~~~~~~g~~v~iv~~n~~~~~~~~HP~HlHG~~f~vv~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~~~~~~~~  152 (226)
                      +++++.|+.|+|.+.|.   ....+.+|+||...   ..   ..|.    .      |. .-.-.|+||           
T Consensus        77 ~ir~~~Gd~v~v~v~N~---l~~~tsiHwHGl~~---~~---~~DG----v------P~-vt~~~I~PG-----------  125 (587)
T TIGR01480        77 LLRWREGDTVRLRVTNT---LPEDTSIHWHGILL---PF---QMDG----V------PG-VSFAGIAPG-----------  125 (587)
T ss_pred             eEEEECCCEEEEEEEcC---CCCCceEEcCCCcC---Cc---cccC----C------Cc-ccccccCCC-----------
Confidence            68999999999999998   46889999999752   11   0010    0      11 111247788           


Q ss_pred             ccchhhhhhhccccceeEEEEE-eCCCCeeEEEeecchhhhhccceeEEEEEcC
Q 041358          153 ITCHEQALIHMNMCLHAWVLTD-TCHKKRAWFVHCHLDHHQSWAMQMAFIVKND  205 (226)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~ir-~adnpG~W~~HCHi~~H~~~Gm~~~~~v~~~  205 (226)
                                      +....+ .+..+|.+.||||...+...||...|+|.+.
T Consensus       126 ----------------~s~~Y~f~~~~~GTyWYHsH~~~q~~~GL~G~lIV~~~  163 (587)
T TIGR01480       126 ----------------ETFTYRFPVRQSGTYWYHSHSGFQEQAGLYGPLIIDPA  163 (587)
T ss_pred             ----------------CeEEEEEECCCCeeEEEecCchhHhhccceEEEEECCC
Confidence                            445666 7788999999999999999999999999763


No 27 
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=97.72  E-value=0.00038  Score=67.76  Aligned_cols=88  Identities=13%  Similarity=0.144  Sum_probs=61.6

Q ss_pred             EEEeecCCEEEEEEEcCCCCCCcCcceeecCceEEEEecCCCCCCCccccccCCCCCCCccceEEcCCCCCCCCCCCCCc
Q 041358           73 VKVLEYNTAVEIVFQGTDLLAGTDHPMHLHGYSFYVVGGGFGNFDRAKDAKRFNFVEPSLQNTIMVPKNVNGPKTFKCPK  152 (226)
Q Consensus        73 ~~~~~~g~~v~iv~~n~~~~~~~~HP~HlHG~~f~vv~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~~~~~~~~  152 (226)
                      ++++..|++|+|.+.|.   ....+.+|.||-..  .+.  ...|           .+...--..|+||           
T Consensus        35 ~i~~~~GD~v~v~v~N~---l~~~tsiHwHGl~q--~~~--~~~D-----------Gv~~vTq~pI~PG-----------   85 (539)
T TIGR03389        35 TLYAREGDTVIVNVTNN---VQYNVTIHWHGVRQ--LRN--GWAD-----------GPAYITQCPIQPG-----------   85 (539)
T ss_pred             EEEEEcCCEEEEEEEeC---CCCCeeEecCCCCC--CCC--CCCC-----------CCcccccCCcCCC-----------
Confidence            68999999999999997   36789999999742  111  1001           1111122246788           


Q ss_pred             ccchhhhhhhccccceeEEEEE-eC-CCCeeEEEeecchhhhhccceeEEEEEcCc
Q 041358          153 ITCHEQALIHMNMCLHAWVLTD-TC-HKKRAWFVHCHLDHHQSWAMQMAFIVKNDR  206 (226)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~ir-~a-dnpG~W~~HCHi~~H~~~Gm~~~~~v~~~~  206 (226)
                                      ....-+ ++ +.+|.+.||||.. ++..||...|+|.++.
T Consensus        86 ----------------~s~~Y~f~~~~~~GT~WYHsH~~-~~~~Gl~G~lIV~~~~  124 (539)
T TIGR03389        86 ----------------QSYVYNFTITGQRGTLWWHAHIS-WLRATVYGAIVILPKP  124 (539)
T ss_pred             ----------------CeEEEEEEecCCCeeEEEecCch-hhhccceEEEEEcCCC
Confidence                            335556 65 6999999999985 4567999999998643


No 28 
>PLN02835 oxidoreductase
Probab=97.69  E-value=0.00046  Score=67.37  Aligned_cols=117  Identities=9%  Similarity=-0.011  Sum_probs=77.3

Q ss_pred             CeeEEEEEeccCCCccCCCCCceEEEEEecCCCCCCCCCCCCCCCCCCCcceEEEeecCCEEEEEEEcCCCCCCcCccee
Q 041358           21 NKYYMSAKAHSSATDVYDDNTTTTAIVQYEGLYPSSKTPLPNLPSYDDTKASVKVLEYNTAVEIVFQGTDLLAGTDHPMH  100 (226)
Q Consensus        21 g~Y~ira~~~~~~~~~~~~~~~~~AILrY~g~~p~~~~~lP~~p~~~d~~~~~~~~~~g~~v~iv~~n~~~~~~~~HP~H  100 (226)
                      ..|.++++......     ....+-++-|.|..|..                +++++.|++|+|.+.|.   ......+|
T Consensus        30 ~~y~~~v~~~~~~~-----dg~~~~~~~~NG~~PGP----------------~I~~~~GD~v~v~v~N~---L~~~ttiH   85 (539)
T PLN02835         30 KYYTWTVTYGTISP-----LGVPQQVILINGQFPGP----------------RLDVVTNDNIILNLINK---LDQPFLLT   85 (539)
T ss_pred             EEEEEEEEEEEecc-----CCeEEEEEEECCcCCCC----------------CEEEECCCEEEEEEEeC---CCCCCcEE
Confidence            45766665432211     22445567777754321                58999999999999997   36788999


Q ss_pred             ecCceEEEEecCCCCCCCccccccCCCCCCCccceEEcCCCCCCCCCCCCCcccchhhhhhhccccceeEEEEE-e-CCC
Q 041358          101 LHGYSFYVVGGGFGNFDRAKDAKRFNFVEPSLQNTIMVPKNVNGPKTFKCPKITCHEQALIHMNMCLHAWVLTD-T-CHK  178 (226)
Q Consensus       101 lHG~~f~vv~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir-~-adn  178 (226)
                      .||-...-...-.|               ... -...|+||                           +...-+ . .+.
T Consensus        86 WHGl~~~~~~~~DG---------------v~~-tQ~pI~PG---------------------------~sf~Y~F~~~~q  122 (539)
T PLN02835         86 WNGIKQRKNSWQDG---------------VLG-TNCPIPPN---------------------------SNYTYKFQTKDQ  122 (539)
T ss_pred             eCCcccCCCCCCCC---------------Ccc-CcCCCCCC---------------------------CcEEEEEEECCC
Confidence            99976311100001               111 12347788                           334555 4 468


Q ss_pred             CeeEEEeecchhhhhccceeEEEEEc
Q 041358          179 KRAWFVHCHLDHHQSWAMQMAFIVKN  204 (226)
Q Consensus       179 pG~W~~HCHi~~H~~~Gm~~~~~v~~  204 (226)
                      +|.+.||||..++...||...|+|.+
T Consensus       123 ~GT~WYHsH~~~q~~~Gl~G~lIV~~  148 (539)
T PLN02835        123 IGTFTYFPSTLFHKAAGGFGAINVYE  148 (539)
T ss_pred             CEeEEEEeCccchhcCcccceeEEeC
Confidence            99999999999999999999999964


No 29 
>PLN02168 copper ion binding / pectinesterase
Probab=97.62  E-value=0.00068  Score=66.30  Aligned_cols=103  Identities=8%  Similarity=0.047  Sum_probs=72.1

Q ss_pred             ceEEEEEecCCCCCCCCCCCCCCCCCCCcceEEEeecCCEEEEEEEcCCCCCCcCcceeecCceEEEEecCCCCCCCccc
Q 041358           42 TTTAIVQYEGLYPSSKTPLPNLPSYDDTKASVKVLEYNTAVEIVFQGTDLLAGTDHPMHLHGYSFYVVGGGFGNFDRAKD  121 (226)
Q Consensus        42 ~~~AILrY~g~~p~~~~~lP~~p~~~d~~~~~~~~~~g~~v~iv~~n~~~~~~~~HP~HlHG~~f~vv~~g~g~~~~~~~  121 (226)
                      ..+-++.|.|..|..                .++++.|++|+|.+.|.   -.....+|.||...  .+.+   |.    
T Consensus        43 ~~~~~~~vNG~~PGP----------------~I~~~~GD~v~V~v~N~---L~~~ttiHWHGl~~--~~~~---~~----   94 (545)
T PLN02168         43 GNKQVIVINDMFPGP----------------LLNATANDVINVNIFNN---LTEPFLMTWNGLQL--RKNS---WQ----   94 (545)
T ss_pred             eEEEEEEECCcCCCC----------------cEEEECCCEEEEEEEeC---CCCCccEeeCCccC--CCCC---Cc----
Confidence            345566787764321                58899999999999997   35778999999652  1110   00    


Q ss_pred             cccCCCCCCCccceEEcCCCCCCCCCCCCCcccchhhhhhhccccceeEEEEE-eC-CCCeeEEEeecchhhhhccceeE
Q 041358          122 AKRFNFVEPSLQNTIMVPKNVNGPKTFKCPKITCHEQALIHMNMCLHAWVLTD-TC-HKKRAWFVHCHLDHHQSWAMQMA  199 (226)
Q Consensus       122 ~~~~n~~~p~~rDtv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir-~a-dnpG~W~~HCHi~~H~~~Gm~~~  199 (226)
                            +..+. -...|+||                           +...-+ ++ +.+|.+.||+|...+...||...
T Consensus        95 ------DGv~g-tQcpI~PG---------------------------~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~  140 (545)
T PLN02168         95 ------DGVRG-TNCPILPG---------------------------TNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGA  140 (545)
T ss_pred             ------CCCCC-CcCCCCCC---------------------------CcEEEEEEeCCCCceEEEecChhhhhhCcceeE
Confidence                  11111 12457788                           335555 65 58999999999999999999999


Q ss_pred             EEEEcCc
Q 041358          200 FIVKNDR  206 (226)
Q Consensus       200 ~~v~~~~  206 (226)
                      |+|.+++
T Consensus       141 lII~~~~  147 (545)
T PLN02168        141 IRIYNPE  147 (545)
T ss_pred             EEEcCCc
Confidence            9998643


No 30 
>PLN02792 oxidoreductase
Probab=97.53  E-value=0.00073  Score=65.98  Aligned_cols=87  Identities=9%  Similarity=-0.009  Sum_probs=62.1

Q ss_pred             EEEeecCCEEEEEEEcCCCCCCcCcceeecCceEEEEecCCCCCCCccccccCCCCCCCccceEEcCCCCCCCCCCCCCc
Q 041358           73 VKVLEYNTAVEIVFQGTDLLAGTDHPMHLHGYSFYVVGGGFGNFDRAKDAKRFNFVEPSLQNTIMVPKNVNGPKTFKCPK  152 (226)
Q Consensus        73 ~~~~~~g~~v~iv~~n~~~~~~~~HP~HlHG~~f~vv~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~~~~~~~~  152 (226)
                      ++++..|++|+|.+.|.   ......+|.||....-  .  . |.          +.+.. -...|+||           
T Consensus        48 ~I~~~~GD~v~V~v~N~---L~~~ttiHWHGl~q~~--~--~-~~----------DGv~~-tqcPI~PG-----------   97 (536)
T PLN02792         48 EIRSLTNDNLVINVHND---LDEPFLLSWNGVHMRK--N--S-YQ----------DGVYG-TTCPIPPG-----------   97 (536)
T ss_pred             cEEEECCCEEEEEEEeC---CCCCcCEeCCCcccCC--C--C-cc----------CCCCC-CcCccCCC-----------
Confidence            68999999999999997   3678899999975311  1  0 00          11111 12457777           


Q ss_pred             ccchhhhhhhccccceeEEEEE-eC-CCCeeEEEeecchhhhhccceeEEEEEcC
Q 041358          153 ITCHEQALIHMNMCLHAWVLTD-TC-HKKRAWFVHCHLDHHQSWAMQMAFIVKND  205 (226)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~ir-~a-dnpG~W~~HCHi~~H~~~Gm~~~~~v~~~  205 (226)
                                      +...-+ .+ |.+|.+.||+|..++...||...|+|.++
T Consensus        98 ----------------~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~  136 (536)
T PLN02792         98 ----------------KNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSL  136 (536)
T ss_pred             ----------------CcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCC
Confidence                            334555 54 68999999999999999999999887653


No 31 
>PRK10965 multicopper oxidase; Provisional
Probab=97.50  E-value=0.0015  Score=63.54  Aligned_cols=84  Identities=15%  Similarity=0.257  Sum_probs=62.2

Q ss_pred             EEEeecCCEEEEEEEcCCCCCCcCcceeecCceEEEEecCCCCCCCccccccCCCCCCCccceEEcCCCCCCCCCCCCCc
Q 041358           73 VKVLEYNTAVEIVFQGTDLLAGTDHPMHLHGYSFYVVGGGFGNFDRAKDAKRFNFVEPSLQNTIMVPKNVNGPKTFKCPK  152 (226)
Q Consensus        73 ~~~~~~g~~v~iv~~n~~~~~~~~HP~HlHG~~f~vv~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~~~~~~~~  152 (226)
                      +++++.|+.|+|.+.|.   -.....+|+||-...  +.    .|.          .|    ...|+||           
T Consensus        78 tIr~~~Gd~v~v~~~N~---L~~~ttiHwHGl~~~--~~----~DG----------~p----q~~I~PG-----------  123 (523)
T PRK10965         78 AVRLQRGKAVTVDITNQ---LPEETTLHWHGLEVP--GE----VDG----------GP----QGIIAPG-----------  123 (523)
T ss_pred             eEEEECCCEEEEEEEEC---CCCCccEEcccccCC--Cc----cCC----------CC----CCCCCCC-----------
Confidence            79999999999999997   367889999998631  11    111          01    1246677           


Q ss_pred             ccchhhhhhhccccceeEEEEE-eCCC-CeeEEEeecc----hhhhhccceeEEEEEcCc
Q 041358          153 ITCHEQALIHMNMCLHAWVLTD-TCHK-KRAWFVHCHL----DHHQSWAMQMAFIVKNDR  206 (226)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~ir-~adn-pG~W~~HCHi----~~H~~~Gm~~~~~v~~~~  206 (226)
                                      +....+ ..+. +|.+.||+|.    ..+...||...|+|.++.
T Consensus       124 ----------------~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~  167 (523)
T PRK10965        124 ----------------GKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDE  167 (523)
T ss_pred             ----------------CEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCcc
Confidence                            334556 6665 6999999996    688899999999998754


No 32 
>PLN02354 copper ion binding / oxidoreductase
Probab=97.45  E-value=0.00073  Score=66.16  Aligned_cols=102  Identities=9%  Similarity=0.005  Sum_probs=71.2

Q ss_pred             ceEEEEEecCCCCCCCCCCCCCCCCCCCcceEEEeecCCEEEEEEEcCCCCCCcCcceeecCceEEEEecCCCCCCCccc
Q 041358           42 TTTAIVQYEGLYPSSKTPLPNLPSYDDTKASVKVLEYNTAVEIVFQGTDLLAGTDHPMHLHGYSFYVVGGGFGNFDRAKD  121 (226)
Q Consensus        42 ~~~AILrY~g~~p~~~~~lP~~p~~~d~~~~~~~~~~g~~v~iv~~n~~~~~~~~HP~HlHG~~f~vv~~g~g~~~~~~~  121 (226)
                      ..+-++-|.|..|..                ++++..|++|+|.+.|.   ....-.+|.||....-...-         
T Consensus        44 ~~r~~~~iNGq~PGP----------------~I~~~~GD~v~V~v~N~---l~~~ttiHWHGi~q~~~~~~---------   95 (552)
T PLN02354         44 VPQQVILINGQFPGP----------------NINSTSNNNIVINVFNN---LDEPFLLTWSGIQQRKNSWQ---------   95 (552)
T ss_pred             eEEEEEEECCCCcCC----------------cEEEeCCCEEEEEEEEC---CCCCcccccccccCCCCccc---------
Confidence            445667777753311                68999999999999997   24566799999753211100         


Q ss_pred             cccCCCCCCCccceEEcCCCCCCCCCCCCCcccchhhhhhhccccceeEEEEE-eC-CCCeeEEEeecchhhhhccceeE
Q 041358          122 AKRFNFVEPSLQNTIMVPKNVNGPKTFKCPKITCHEQALIHMNMCLHAWVLTD-TC-HKKRAWFVHCHLDHHQSWAMQMA  199 (226)
Q Consensus       122 ~~~~n~~~p~~rDtv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir-~a-dnpG~W~~HCHi~~H~~~Gm~~~  199 (226)
                            +.++. --..|+||                           +...-+ ++ +.+|.+.||+|...+...||...
T Consensus        96 ------DGv~~-TQcpI~PG---------------------------~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~  141 (552)
T PLN02354         96 ------DGVPG-TNCPIPPG---------------------------TNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGG  141 (552)
T ss_pred             ------CCCcC-CcCCCCCC---------------------------CcEEEEEEeCCCCcceEEecCccceecCCccce
Confidence                  11112 22457788                           335555 55 68999999999999999999999


Q ss_pred             EEEEcC
Q 041358          200 FIVKND  205 (226)
Q Consensus       200 ~~v~~~  205 (226)
                      |+|.++
T Consensus       142 lII~~~  147 (552)
T PLN02354        142 LRVNSR  147 (552)
T ss_pred             EEEcCC
Confidence            999864


No 33 
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=97.25  E-value=0.00088  Score=66.18  Aligned_cols=88  Identities=10%  Similarity=-0.006  Sum_probs=64.7

Q ss_pred             EEEeecCCEEEEEEEcCCCCCCcCcceeecCceEEEEecCCCCCCCccccccCCCCCCCccceEEcCCCCCCCCCCCCCc
Q 041358           73 VKVLEYNTAVEIVFQGTDLLAGTDHPMHLHGYSFYVVGGGFGNFDRAKDAKRFNFVEPSLQNTIMVPKNVNGPKTFKCPK  152 (226)
Q Consensus        73 ~~~~~~g~~v~iv~~n~~~~~~~~HP~HlHG~~f~vv~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~~~~~~~~  152 (226)
                      ++++..|+.|+|.+.|.   ......+|.||.......-..|               +.. ....|+||           
T Consensus        61 tI~~~~GD~v~V~V~N~---L~~~ttIHWHGl~q~~t~w~DG---------------v~~-TQcPI~PG-----------  110 (596)
T PLN00044         61 ALNVTTNWNLVVNVRNA---LDEPLLLTWHGVQQRKSAWQDG---------------VGG-TNCAIPAG-----------  110 (596)
T ss_pred             cEEEECCCEEEEEEEeC---CCCCccEEECCccCCCCccccC---------------CCC-CcCCcCCC-----------
Confidence            68899999999999998   3678899999965321111111               111 23457788           


Q ss_pred             ccchhhhhhhccccceeEEEEE-eC-CCCeeEEEeecchhhhhccceeEEEEEcCc
Q 041358          153 ITCHEQALIHMNMCLHAWVLTD-TC-HKKRAWFVHCHLDHHQSWAMQMAFIVKNDR  206 (226)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~ir-~a-dnpG~W~~HCHi~~H~~~Gm~~~~~v~~~~  206 (226)
                                      +...-+ .+ |.+|...||+|..++...||...|+|.+..
T Consensus       111 ----------------~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~  150 (596)
T PLN00044        111 ----------------WNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRD  150 (596)
T ss_pred             ----------------CcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcc
Confidence                            335555 55 689999999999999999999999998643


No 34 
>PRK10883 FtsI repressor; Provisional
Probab=97.19  E-value=0.012  Score=56.66  Aligned_cols=55  Identities=11%  Similarity=0.185  Sum_probs=42.8

Q ss_pred             EEEeecCCEEEEEEEcCCCCCCcCcceee-cCceEEEEecCCCCCCCccccccCCCCCCCccceEEcCCC
Q 041358           73 VKVLEYNTAVEIVFQGTDLLAGTDHPMHL-HGYSFYVVGGGFGNFDRAKDAKRFNFVEPSLQNTIMVPKN  141 (226)
Q Consensus        73 ~~~~~~g~~v~iv~~n~~~~~~~~HP~Hl-HG~~f~vv~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~  141 (226)
                      .+.++.+ +++|+|.|.+  .....-+++ +||.|+|++...|.           +..|...|.+.+.+|
T Consensus       221 ~~~v~~~-~~RlRliNas--~~~~~~l~l~d~~~~~vIa~DGg~-----------~~~P~~~~~l~l~pG  276 (471)
T PRK10883        221 YVEVSRG-WVRLRLLNAS--NARRYQLQMSDGRPLHVIAGDQGF-----------LPAPVSVKQLSLAPG  276 (471)
T ss_pred             eEEecCC-EEEEEEEEcc--CCceEEEEEcCCCeEEEEEeCCCc-----------ccCCcEeCeEEECCC
Confidence            6677764 7999999986  456677888 89999999986443           234777799999999


No 35 
>PLN02991 oxidoreductase
Probab=96.88  E-value=0.01  Score=58.13  Aligned_cols=102  Identities=11%  Similarity=0.031  Sum_probs=71.0

Q ss_pred             ceEEEEEecCCCCCCCCCCCCCCCCCCCcceEEEeecCCEEEEEEEcCCCCCCcCcceeecCceEEEEecCCCCCCCccc
Q 041358           42 TTTAIVQYEGLYPSSKTPLPNLPSYDDTKASVKVLEYNTAVEIVFQGTDLLAGTDHPMHLHGYSFYVVGGGFGNFDRAKD  121 (226)
Q Consensus        42 ~~~AILrY~g~~p~~~~~lP~~p~~~d~~~~~~~~~~g~~v~iv~~n~~~~~~~~HP~HlHG~~f~vv~~g~g~~~~~~~  121 (226)
                      ..+-++-|.|..|..                .+++..|++|+|.+.|.   -...-.+|.||-..  .+.  ...|    
T Consensus        45 ~~r~~~~vNG~~PGP----------------~I~~~~GD~v~V~V~N~---L~~~ttiHWHGi~q--~~~--~~~D----   97 (543)
T PLN02991         45 VAQQGILINGKFPGP----------------DIISVTNDNLIINVFNH---LDEPFLISWSGIRN--WRN--SYQD----   97 (543)
T ss_pred             EEEEEEEEcCCCCCC----------------cEEEECCCEEEEEecCC---CCCCccEEECCccc--CCC--cccc----
Confidence            445667777754321                58899999999999997   35677899999763  111  0001    


Q ss_pred             cccCCCCCCCccceEEcCCCCCCCCCCCCCcccchhhhhhhccccceeEEEEE-eC-CCCeeEEEeecchhhhhccceeE
Q 041358          122 AKRFNFVEPSLQNTIMVPKNVNGPKTFKCPKITCHEQALIHMNMCLHAWVLTD-TC-HKKRAWFVHCHLDHHQSWAMQMA  199 (226)
Q Consensus       122 ~~~~n~~~p~~rDtv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir-~a-dnpG~W~~HCHi~~H~~~Gm~~~  199 (226)
                             .... -...|+||                           +...-+ .+ +.+|...||+|...+...|+...
T Consensus        98 -------Gv~~-tQcpI~PG---------------------------~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~  142 (543)
T PLN02991         98 -------GVYG-TTCPIPPG---------------------------KNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGA  142 (543)
T ss_pred             -------CCCC-CCCccCCC---------------------------CcEEEEEEeCCCCcceEEecCcchhhhCCCeee
Confidence                   0111 12356777                           335556 55 68999999999999988999999


Q ss_pred             EEEEcC
Q 041358          200 FIVKND  205 (226)
Q Consensus       200 ~~v~~~  205 (226)
                      |+|.+.
T Consensus       143 lIV~~~  148 (543)
T PLN02991        143 IRISSR  148 (543)
T ss_pred             EEEeCC
Confidence            999864


No 36 
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=96.86  E-value=0.013  Score=57.27  Aligned_cols=88  Identities=16%  Similarity=0.154  Sum_probs=58.8

Q ss_pred             EEEeecCCEEEEEEEcCCCCCCcCcceeecCceEEEEecCCCCCCCccccccCCCCCCCccceEEcCCCCCCCCCCCCCc
Q 041358           73 VKVLEYNTAVEIVFQGTDLLAGTDHPMHLHGYSFYVVGGGFGNFDRAKDAKRFNFVEPSLQNTIMVPKNVNGPKTFKCPK  152 (226)
Q Consensus        73 ~~~~~~g~~v~iv~~n~~~~~~~~HP~HlHG~~f~vv~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~~~~~~~~  152 (226)
                      ++++..|+.|+|.+.|.-  ......+|.||-...-...-.|               .+..-...|+||           
T Consensus        40 ~I~~~~GD~v~V~v~N~L--~~~~ttiHwHGi~~~~~~~~DG---------------vp~vTQcpI~PG-----------   91 (538)
T TIGR03390        40 EIRLQEGQTTWIRVYNDI--PDNNVTMHWHGLTQRTAPFSDG---------------TPLASQWPIPPG-----------   91 (538)
T ss_pred             eEEEeCCCEEEEEEEECC--CCCCceEECCCCCCCCCCCCCC---------------CcccccCCCCCC-----------
Confidence            689999999999999972  2467889999975321110001               111111246788           


Q ss_pred             ccchhhhhhhccccceeEEEEE-eC--CCCeeEEEeecchhhhhccceeEEEEEcC
Q 041358          153 ITCHEQALIHMNMCLHAWVLTD-TC--HKKRAWFVHCHLDHHQSWAMQMAFIVKND  205 (226)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~ir-~a--dnpG~W~~HCHi~~H~~~Gm~~~~~v~~~  205 (226)
                                      +...-+ .+  +.+|.+.||||..... .||...|+|.++
T Consensus        92 ----------------~sf~Y~f~~~~~q~GT~WYHsH~~~Q~-~~l~G~lIV~~~  130 (538)
T TIGR03390        92 ----------------HFFDYEIKPEPGDAGSYFYHSHVGFQA-VTAFGPLIVEDC  130 (538)
T ss_pred             ----------------CcEEEEEEecCCCCeeeEEecCCchhh-hcceeEEEEccC
Confidence                            223444 43  5899999999987654 579999999864


No 37 
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=96.86  E-value=0.0063  Score=46.13  Aligned_cols=82  Identities=13%  Similarity=0.163  Sum_probs=51.2

Q ss_pred             EEEeecCCEEEEEEEcCCCCCCcCcceeecCceEEEEecCCCCCCCccccccCCCCCCCccceEEcCCCCCCCCCCCCCc
Q 041358           73 VKVLEYNTAVEIVFQGTDLLAGTDHPMHLHGYSFYVVGGGFGNFDRAKDAKRFNFVEPSLQNTIMVPKNVNGPKTFKCPK  152 (226)
Q Consensus        73 ~~~~~~g~~v~iv~~n~~~~~~~~HP~HlHG~~f~vv~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~~~~~~~~  152 (226)
                      .+.++.|++|+|+  |.+   ...|-+.++.-.+..     +.    .     ........+.+.+.||.          
T Consensus        18 ~i~v~~G~~V~~~--N~~---~~~H~~~~~~~~~~~-----~~----~-----~~~~~~~~~~~~~~pG~----------   68 (99)
T TIGR02656        18 KISIAAGDTVEWV--NNK---GGPHNVVFDEDAVPA-----GV----K-----ELAKSLSHKDLLNSPGE----------   68 (99)
T ss_pred             EEEECCCCEEEEE--ECC---CCCceEEECCCCCcc-----ch----h-----hhcccccccccccCCCC----------
Confidence            6889999999877  652   456766654321110     00    0     00111223567788882          


Q ss_pred             ccchhhhhhhccccceeEEEEEeCCCCeeEEEeecchhhhhccceeEEEEE
Q 041358          153 ITCHEQALIHMNMCLHAWVLTDTCHKKRAWFVHCHLDHHQSWAMQMAFIVK  203 (226)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~ir~adnpG~W~~HCHi~~H~~~Gm~~~~~v~  203 (226)
                                      . ..+. .+.||.+.|+|-  -|...||...+.|+
T Consensus        69 ----------------t-~~~t-F~~~G~y~y~C~--~H~~aGM~G~I~V~   99 (99)
T TIGR02656        69 ----------------S-YEVT-FSTPGTYTFYCE--PHRGAGMVGKITVE   99 (99)
T ss_pred             ----------------E-EEEE-eCCCEEEEEEcC--CccccCCEEEEEEC
Confidence                            2 3333 345999999998  89999999999873


No 38 
>PF00127 Copper-bind:  Copper binding proteins, plastocyanin/azurin family;  InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=96.03  E-value=0.12  Score=38.90  Aligned_cols=26  Identities=23%  Similarity=0.250  Sum_probs=23.0

Q ss_pred             CCCCeeEEEeecchhhhhccceeEEEEE
Q 041358          176 CHKKRAWFVHCHLDHHQSWAMQMAFIVK  203 (226)
Q Consensus       176 adnpG~W~~HCHi~~H~~~Gm~~~~~v~  203 (226)
                      .+.||.+.|+|- - |...||...++|+
T Consensus        74 F~~~G~y~y~C~-P-H~~~GM~G~i~V~   99 (99)
T PF00127_consen   74 FTKPGTYEYYCT-P-HYEAGMVGTIIVE   99 (99)
T ss_dssp             EESSEEEEEEET-T-TGGTTSEEEEEEE
T ss_pred             eCCCeEEEEEcC-C-CcccCCEEEEEEC
Confidence            349999999999 4 9999999999884


No 39 
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=95.64  E-value=0.066  Score=43.47  Aligned_cols=59  Identities=14%  Similarity=0.261  Sum_probs=43.6

Q ss_pred             EEEeecCCEEEEEEEcCCCCCCcCcceeecCceEEEEecCCCCCCCccccccCCCCCCCccceEEcCCCCCCCCCCCCCc
Q 041358           73 VKVLEYNTAVEIVFQGTDLLAGTDHPMHLHGYSFYVVGGGFGNFDRAKDAKRFNFVEPSLQNTIMVPKNVNGPKTFKCPK  152 (226)
Q Consensus        73 ~~~~~~g~~v~iv~~n~~~~~~~~HP~HlHG~~f~vv~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~~~~~~~~  152 (226)
                      .+.++.|+.|+|++.|.+   ...|.+-++++.                            -...|++|           
T Consensus        62 ~I~VkaGD~Vtl~vtN~d---~~~H~f~i~~~g----------------------------is~~I~pG-----------   99 (135)
T TIGR03096        62 ALVVKKGTPVKVTVENKS---PISEGFSIDAYG----------------------------ISEVIKAG-----------   99 (135)
T ss_pred             EEEECCCCEEEEEEEeCC---CCccceEECCCC----------------------------cceEECCC-----------
Confidence            688999999999999984   455655544431                            02356677           


Q ss_pred             ccchhhhhhhccccceeEEEEE-eCCCCeeEEEeecch
Q 041358          153 ITCHEQALIHMNMCLHAWVLTD-TCHKKRAWFVHCHLD  189 (226)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~ir-~adnpG~W~~HCHi~  189 (226)
                                      ....++ .++.||.+-|||-..
T Consensus       100 ----------------et~TitF~adKpG~Y~y~C~~H  121 (135)
T TIGR03096       100 ----------------ETKTISFKADKAGAFTIWCQLH  121 (135)
T ss_pred             ----------------CeEEEEEECCCCEEEEEeCCCC
Confidence                            346777 999999999999865


No 40 
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.53  E-value=0.055  Score=53.33  Aligned_cols=88  Identities=10%  Similarity=0.041  Sum_probs=62.0

Q ss_pred             EEEeecCCEEEEEEEcCCCCCCcCcceeecCceEEEEecCCCCCCCccccccCCCCCCCccceEEcCCCCCCCCCCCCCc
Q 041358           73 VKVLEYNTAVEIVFQGTDLLAGTDHPMHLHGYSFYVVGGGFGNFDRAKDAKRFNFVEPSLQNTIMVPKNVNGPKTFKCPK  152 (226)
Q Consensus        73 ~~~~~~g~~v~iv~~n~~~~~~~~HP~HlHG~~f~vv~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~~~~~~~~  152 (226)
                      .+.+..|+.|.|.+.|.   ....=.+|.||....--.-..|                ..--.-.|+||           
T Consensus        60 ~I~~~~gD~ivV~v~N~---~~~~~sihWhGv~q~kn~w~DG----------------~~~TqCPI~Pg-----------  109 (563)
T KOG1263|consen   60 TINAEEGDTIVVNVVNR---LDEPFSIHWHGVRQRKNPWQDG----------------VYITQCPIQPG-----------  109 (563)
T ss_pred             eEEEEeCCEEEEEEEeC---CCCceEEEeccccccCCccccC----------------CccccCCcCCC-----------
Confidence            68999999999999997   3577788999976422111111                01011234566           


Q ss_pred             ccchhhhhhhccccceeEEEEE--eCCCCeeEEEeecchhhhhccceeEEEEEcCc
Q 041358          153 ITCHEQALIHMNMCLHAWVLTD--TCHKKRAWFVHCHLDHHQSWAMQMAFIVKNDR  206 (226)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~ir--~adnpG~W~~HCHi~~H~~~Gm~~~~~v~~~~  206 (226)
                                      .-..=+  ..|..|.++||-|..||-..||...|+|.+..
T Consensus       110 ----------------~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~  149 (563)
T KOG1263|consen  110 ----------------ENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRP  149 (563)
T ss_pred             ----------------CeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCc
Confidence                            224444  45599999999999999999999999998643


No 41 
>PRK02888 nitrous-oxide reductase; Validated
Probab=95.02  E-value=0.13  Score=51.29  Aligned_cols=77  Identities=16%  Similarity=0.237  Sum_probs=52.6

Q ss_pred             EEEeecCCEEEEEEEcCCCCCCcCcceeecCceEEEEecCCCCCCCccccccCCCCCCCccceEEcCCCCCCCCCCCCCc
Q 041358           73 VKVLEYNTAVEIVFQGTDLLAGTDHPMHLHGYSFYVVGGGFGNFDRAKDAKRFNFVEPSLQNTIMVPKNVNGPKTFKCPK  152 (226)
Q Consensus        73 ~~~~~~g~~v~iv~~n~~~~~~~~HP~HlHG~~f~vv~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~~~~~~~~  152 (226)
                      .+.++.|+.|+|.+.|.+-..+..|.|-+-++..                            -+.+.||           
T Consensus       556 ~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI----------------------------~~dv~PG-----------  596 (635)
T PRK02888        556 EFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGV----------------------------NMEVAPQ-----------  596 (635)
T ss_pred             eEEecCCCEEEEEEEeCCcccccccceeecccCc----------------------------cEEEcCC-----------
Confidence            6778999999999999742235566554433211                            1244566           


Q ss_pred             ccchhhhhhhccccceeEEEEE-eCCCCeeEEEeecchhhh-hccceeEEEEEc
Q 041358          153 ITCHEQALIHMNMCLHAWVLTD-TCHKKRAWFVHCHLDHHQ-SWAMQMAFIVKN  204 (226)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~ir-~adnpG~W~~HCHi~~H~-~~Gm~~~~~v~~  204 (226)
                                      ....+. +++.||.|.++|...-|. ..+|...++|++
T Consensus       597 ----------------~t~svtF~adkPGvy~~~CtefCGa~H~~M~G~~iVep  634 (635)
T PRK02888        597 ----------------ATASVTFTADKPGVYWYYCTWFCHALHMEMRGRMLVEP  634 (635)
T ss_pred             ----------------ceEEEEEEcCCCEEEEEECCcccccCcccceEEEEEEe
Confidence                            335556 899999999999985443 248888888864


No 42 
>PF13473 Cupredoxin_1:  Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=93.86  E-value=0.36  Score=36.47  Aligned_cols=61  Identities=13%  Similarity=0.166  Sum_probs=36.6

Q ss_pred             EEEeecCCEEEEEEEcCCCCCCcCcceeecCceEEEEecCCCCCCCccccccCCCCCCCccceEEcCCCCCCCCCCCCCc
Q 041358           73 VKVLEYNTAVEIVFQGTDLLAGTDHPMHLHGYSFYVVGGGFGNFDRAKDAKRFNFVEPSLQNTIMVPKNVNGPKTFKCPK  152 (226)
Q Consensus        73 ~~~~~~g~~v~iv~~n~~~~~~~~HP~HlHG~~f~vv~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~~~~~~~~  152 (226)
                      .+.++.|+.|+|+|.|.+   ...|-+.+-+       .                    . -...|.+|           
T Consensus        36 ~i~v~~G~~v~l~~~N~~---~~~h~~~i~~-------~--------------------~-~~~~l~~g-----------   73 (104)
T PF13473_consen   36 TITVKAGQPVTLTFTNND---SRPHEFVIPD-------L--------------------G-ISKVLPPG-----------   73 (104)
T ss_dssp             EEEEETTCEEEEEEEE-S---SS-EEEEEGG-------G--------------------T-EEEEE-TT-----------
T ss_pred             EEEEcCCCeEEEEEEECC---CCcEEEEECC-------C--------------------c-eEEEECCC-----------
Confidence            789999999999999985   3434333333       1                    1 12566777           


Q ss_pred             ccchhhhhhhccccceeEEEEE-eCCCCeeEEEeecchhh
Q 041358          153 ITCHEQALIHMNMCLHAWVLTD-TCHKKRAWFVHCHLDHH  191 (226)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~ir-~adnpG~W~~HCHi~~H  191 (226)
                                      .-..+. .++.||.+-|+|-+..+
T Consensus        74 ----------------~~~~~~f~~~~~G~y~~~C~~~~~   97 (104)
T PF13473_consen   74 ----------------ETATVTFTPLKPGEYEFYCTMHPN   97 (104)
T ss_dssp             -----------------EEEEEEEE-S-EEEEEB-SSS-T
T ss_pred             ----------------CEEEEEEcCCCCEEEEEEcCCCCc
Confidence                            224555 78999999999996543


No 43 
>PRK02710 plastocyanin; Provisional
Probab=92.77  E-value=0.63  Score=36.38  Aligned_cols=26  Identities=15%  Similarity=0.226  Sum_probs=22.1

Q ss_pred             CCCCeeEEEeecchhhhhccceeEEEEE
Q 041358          176 CHKKRAWFVHCHLDHHQSWAMQMAFIVK  203 (226)
Q Consensus       176 adnpG~W~~HCHi~~H~~~Gm~~~~~v~  203 (226)
                      .+.||.+-|+|=  -|...||...++|+
T Consensus        94 F~~~G~y~y~C~--~H~~~gM~G~I~V~  119 (119)
T PRK02710         94 FSEAGTYTYYCE--PHRGAGMVGKITVE  119 (119)
T ss_pred             ecCCEEEEEEcC--CCccCCcEEEEEEC
Confidence            345999999997  78889999999873


No 44 
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=92.56  E-value=0.59  Score=44.45  Aligned_cols=87  Identities=18%  Similarity=0.171  Sum_probs=56.4

Q ss_pred             EEEeecCCEEEEEEEcCCCCCCcCcceeecCceEEEEecCCCCCCCccccccCCCCCCCccceEEcCCCCCCCCCCCCCc
Q 041358           73 VKVLEYNTAVEIVFQGTDLLAGTDHPMHLHGYSFYVVGGGFGNFDRAKDAKRFNFVEPSLQNTIMVPKNVNGPKTFKCPK  152 (226)
Q Consensus        73 ~~~~~~g~~v~iv~~n~~~~~~~~HP~HlHG~~f~vv~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~~~~~~~~  152 (226)
                      .++++.|++|++.+.|.-   ...=.+|.||  +.+-....|             ..+  ...+.+.++           
T Consensus        65 ~i~~~~Gd~v~l~~~N~l---~~~t~vh~HG--~~~p~~~dG-------------~~~--~~~~~~~~~-----------  113 (451)
T COG2132          65 TIRVKKGDTVTLDLTNRL---LVDTSVHWHG--LPVPGEMDG-------------VPP--LTQIPPGPG-----------  113 (451)
T ss_pred             eEEEecCCEEEEEEEeCC---CCCceEEEcC--cccCccccC-------------CCc--ccccCCCCC-----------
Confidence            799999999999999972   2226789999  222211111             001  112222233           


Q ss_pred             ccchhhhhhhccccceeEEEEE-eCCCCeeEEEeecchhhhhccceeEEEEEcCc
Q 041358          153 ITCHEQALIHMNMCLHAWVLTD-TCHKKRAWFVHCHLDHHQSWAMQMAFIVKNDR  206 (226)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~ir-~adnpG~W~~HCHi~~H~~~Gm~~~~~v~~~~  206 (226)
                                      ...... ..+-||...||-|-.-....||...++|.+..
T Consensus       114 ----------------~~~~y~f~~~~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~  152 (451)
T COG2132         114 ----------------ETPTYTFTQDVPGTYWYHPHTHGQVYDGLAGALIIEDEN  152 (451)
T ss_pred             ----------------CcEEEeecCCCCcceEeccCCCchhhcccceeEEEeCCC
Confidence                            223444 66778877788888778899999999998753


No 45 
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=90.45  E-value=1.6  Score=34.42  Aligned_cols=29  Identities=21%  Similarity=0.286  Sum_probs=26.4

Q ss_pred             eCCCCeeEEEeecchhhhhccceeEEEEEcC
Q 041358          175 TCHKKRAWFVHCHLDHHQSWAMQMAFIVKND  205 (226)
Q Consensus       175 ~adnpG~W~~HCHi~~H~~~Gm~~~~~v~~~  205 (226)
                      +.+.||..-|+|-  -|...||...++|.++
T Consensus        61 tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~   89 (116)
T TIGR02375        61 TVTEEGVYGVKCT--PHYGMGMVALIQVGDP   89 (116)
T ss_pred             EeCCCEEEEEEcC--CCccCCCEEEEEECCC
Confidence            5678999999998  8999999999999875


No 46 
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=88.37  E-value=1.7  Score=36.20  Aligned_cols=94  Identities=12%  Similarity=0.076  Sum_probs=58.7

Q ss_pred             EEEeecCCEEEEEEEcCCCCCCcCcceeecCceEEEEecCCCCCCCccccccCCCCCCCccceEEcCCCCCCCCCCCCCc
Q 041358           73 VKVLEYNTAVEIVFQGTDLLAGTDHPMHLHGYSFYVVGGGFGNFDRAKDAKRFNFVEPSLQNTIMVPKNVNGPKTFKCPK  152 (226)
Q Consensus        73 ~~~~~~g~~v~iv~~n~~~~~~~~HP~HlHG~~f~vv~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~~~~~~~~  152 (226)
                      .+.++.|+++++++.|..   ...|=|=+-   ++..--  +.+.-........-+   ...++.|.||.+         
T Consensus        64 ~~~v~aG~tv~~v~~n~~---el~hef~~~---~~~~~~--~~~~~~~~~~Dme~d---~~~~v~L~PG~s---------  123 (158)
T COG4454          64 SFEVKAGETVRFVLKNEG---ELKHEFTMD---APDKNL--EHVTHMILADDMEHD---DPNTVTLAPGKS---------  123 (158)
T ss_pred             cccccCCcEEeeeecCcc---cceEEEecc---Cccccc--hhHHHhhhCCccccC---CcceeEeCCCCc---------
Confidence            678999999999999984   555544333   110000  000000000000112   337889999932         


Q ss_pred             ccchhhhhhhccccceeEEEEEeCCCCeeEEEeecchhhhhccceeEEEEE
Q 041358          153 ITCHEQALIHMNMCLHAWVLTDTCHKKRAWFVHCHLDHHQSWAMQMAFIVK  203 (226)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~ir~adnpG~W~~HCHi~~H~~~Gm~~~~~v~  203 (226)
                                     +.|++  ...++|..-|-|-+-+|.+.||...|.|.
T Consensus       124 ---------------~elvv--~ft~~g~ye~~C~iPGHy~AGM~g~itV~  157 (158)
T COG4454         124 ---------------GELVV--VFTGAGKYEFACNIPGHYEAGMVGEITVS  157 (158)
T ss_pred             ---------------EEEEE--EecCCccEEEEecCCCcccCCcEEEEEeC
Confidence                           13333  67899999999999999999999999875


No 47 
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=87.38  E-value=4.4  Score=31.83  Aligned_cols=27  Identities=22%  Similarity=0.413  Sum_probs=23.7

Q ss_pred             eCCCCeeEEEeecchhhhhccceeEEEEE
Q 041358          175 TCHKKRAWFVHCHLDHHQSWAMQMAFIVK  203 (226)
Q Consensus       175 ~adnpG~W~~HCHi~~H~~~Gm~~~~~v~  203 (226)
                      ..+.||.+.|+|-  .|..+||...++|+
T Consensus        89 Tf~~~G~Y~Y~C~--pH~~~gM~G~I~V~  115 (115)
T TIGR03102        89 TFEEPGIYLYVCV--PHEALGMKGAVVVE  115 (115)
T ss_pred             EecCCcEEEEEcc--CCCCCCCEEEEEEC
Confidence            5678999999998  78889999998873


No 48 
>PF06525 SoxE:  Sulfocyanin (SoxE);  InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=86.86  E-value=9.3  Score=32.95  Aligned_cols=30  Identities=17%  Similarity=0.257  Sum_probs=26.9

Q ss_pred             CCCCeeEEEeecchhhhhccceeEEEEEcC
Q 041358          176 CHKKRAWFVHCHLDHHQSWAMQMAFIVKND  205 (226)
Q Consensus       176 adnpG~W~~HCHi~~H~~~Gm~~~~~v~~~  205 (226)
                      .-.||...+=|-+.-|...||...|+|.+.
T Consensus       159 ~l~aG~YwlvC~ipGHA~sGMw~~LiVs~~  188 (196)
T PF06525_consen  159 DLPAGYYWLVCGIPGHAESGMWGVLIVSSN  188 (196)
T ss_pred             cCCCceEEEEccCCChhhcCCEEEEEEecC
Confidence            336999999999999999999999999764


No 49 
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=86.46  E-value=4.5  Score=29.33  Aligned_cols=25  Identities=20%  Similarity=0.305  Sum_probs=19.6

Q ss_pred             eCCCCeeEEEeecchhhhhccceeEEEEE
Q 041358          175 TCHKKRAWFVHCHLDHHQSWAMQMAFIVK  203 (226)
Q Consensus       175 ~adnpG~W~~HCHi~~H~~~Gm~~~~~v~  203 (226)
                      ..+.||.+.|||=+.  -  .|...++|+
T Consensus        59 tf~~~G~y~y~C~~H--p--~M~G~v~V~   83 (83)
T TIGR02657        59 TFTEAGTYDYHCTPH--P--FMRGKVVVE   83 (83)
T ss_pred             ECCCCEEEEEEcCCC--C--CCeEEEEEC
Confidence            678899999999874  3  488877763


No 50 
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=83.89  E-value=16  Score=31.32  Aligned_cols=31  Identities=16%  Similarity=0.315  Sum_probs=27.5

Q ss_pred             eCCCCeeEEEeecchhhhhccceeEEEEEcC
Q 041358          175 TCHKKRAWFVHCHLDHHQSWAMQMAFIVKND  205 (226)
Q Consensus       175 ~adnpG~W~~HCHi~~H~~~Gm~~~~~v~~~  205 (226)
                      ..-.||...+=|=+.-|...||...++|...
T Consensus       157 ~~~~~G~YwlvCgipGHAesGMw~~lIVSs~  187 (195)
T TIGR03094       157 NDTSAGKYWLVCGITGHAESGMWAVVIVSSN  187 (195)
T ss_pred             ccCCCeeEEEEcccCChhhcCcEEEEEEecC
Confidence            4458999999999999999999999999753


No 51 
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=73.45  E-value=20  Score=30.39  Aligned_cols=34  Identities=9%  Similarity=0.011  Sum_probs=23.1

Q ss_pred             EEEE-eCCCCeeEEEeecchhhh-hccceeEEEEEc
Q 041358          171 VLTD-TCHKKRAWFVHCHLDHHQ-SWAMQMAFIVKN  204 (226)
Q Consensus       171 ~~ir-~adnpG~W~~HCHi~~H~-~~Gm~~~~~v~~  204 (226)
                      ..+. .++.||.....|-..-.. ...|...+.|.+
T Consensus       157 ~~~~~~~~~~G~y~~~c~e~cG~~h~~M~~~v~v~~  192 (201)
T TIGR02866       157 NALWFNADEPGVYYGYCAELCGAGHSLMLFKVVVVE  192 (201)
T ss_pred             EEEEEEeCCCEEEEEEehhhCCcCccCCeEEEEEEC
Confidence            4455 789999999999973221 256666666653


No 52 
>PF00116 COX2:  Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.;  InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=52.57  E-value=1.1e+02  Score=23.84  Aligned_cols=27  Identities=15%  Similarity=0.158  Sum_probs=20.8

Q ss_pred             eEEEeecCCEEEEEEEcCCCCCCcCcceeec
Q 041358           72 SVKVLEYNTAVEIVFQGTDLLAGTDHPMHLH  102 (226)
Q Consensus        72 ~~~~~~~g~~v~iv~~n~~~~~~~~HP~HlH  102 (226)
                      +.+.++.|+.|++.+.+.    +..|.|.+-
T Consensus        46 ~~l~lp~g~~v~~~ltS~----DViHsf~ip   72 (120)
T PF00116_consen   46 NELVLPAGQPVRFHLTSE----DVIHSFWIP   72 (120)
T ss_dssp             SEEEEETTSEEEEEEEES----SS-EEEEET
T ss_pred             ceecccccceEeEEEEcC----Ccccccccc
Confidence            389999999999999997    456655543


No 53 
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=48.92  E-value=99  Score=24.82  Aligned_cols=27  Identities=19%  Similarity=0.289  Sum_probs=22.5

Q ss_pred             eCCCCeeEEEeecchhhhhccceeEEEEE
Q 041358          175 TCHKKRAWFVHCHLDHHQSWAMQMAFIVK  203 (226)
Q Consensus       175 ~adnpG~W~~HCHi~~H~~~Gm~~~~~v~  203 (226)
                      ..+.||...|.|-  .|..+||...++|+
T Consensus       101 Tfe~~G~Y~Y~C~--PH~~~gM~G~IvV~  127 (128)
T COG3794         101 TFETPGEYTYYCT--PHPGMGMKGKIVVG  127 (128)
T ss_pred             EecccceEEEEec--cCCCCCcEEEEEeC
Confidence            3455999999996  68889999999885


No 54 
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=41.49  E-value=1.7e+02  Score=25.94  Aligned_cols=75  Identities=19%  Similarity=0.128  Sum_probs=48.8

Q ss_pred             eEEEeecCCEEEEEEEcCCCCCCcCcceeecCceEEEEecCCCCCCCccccccCCCCCCCccceEEcCCCCCCCCCCCCC
Q 041358           72 SVKVLEYNTAVEIVFQGTDLLAGTDHPMHLHGYSFYVVGGGFGNFDRAKDAKRFNFVEPSLQNTIMVPKNVNGPKTFKCP  151 (226)
Q Consensus        72 ~~~~~~~g~~v~iv~~n~~~~~~~~HP~HlHG~~f~vv~~g~g~~~~~~~~~~~n~~~p~~rDtv~v~~~~~~~~~~~~~  151 (226)
                      +.+.++.|+.|++.+...    +..|       +|++-+-|                     .-+.+-||.         
T Consensus       137 n~l~lPv~~~V~f~ltS~----DViH-------sF~IP~l~---------------------~k~d~iPG~---------  175 (247)
T COG1622         137 NELVLPVGRPVRFKLTSA----DVIH-------SFWIPQLG---------------------GKIDAIPGM---------  175 (247)
T ss_pred             ceEEEeCCCeEEEEEEec----hhce-------eEEecCCC---------------------ceeeecCCc---------
Confidence            478899999999998875    3444       66765433                     223334451         


Q ss_pred             cccchhhhhhhccccceeEEEEE-eCCCCeeEEEeecchhhhh-ccceeEEEEEcC
Q 041358          152 KITCHEQALIHMNMCLHAWVLTD-TCHKKRAWFVHCHLDHHQS-WAMQMAFIVKND  205 (226)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~ir-~adnpG~W~~HCHi~~H~~-~Gm~~~~~v~~~  205 (226)
                                        -..+. .++.||....+|...-=.. ..|-..++|...
T Consensus       176 ------------------~~~~~~~~~~~G~Y~g~Cae~CG~gH~~M~~~v~vvs~  213 (247)
T COG1622         176 ------------------TTELWLTANKPGTYRGICAEYCGPGHSFMRFKVIVVSQ  213 (247)
T ss_pred             ------------------eEEEEEecCCCeEEEEEcHhhcCCCcccceEEEEEEcH
Confidence                              13444 8999999999999764333 456666666653


No 55 
>PF12690 BsuPI:  Intracellular proteinase inhibitor;  InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=36.55  E-value=28  Score=25.49  Aligned_cols=14  Identities=36%  Similarity=0.593  Sum_probs=10.5

Q ss_pred             EEeccCceEEEEEE
Q 041358            2 LTISPGQIIDVLIK   15 (226)
Q Consensus         2 l~I~pGQRydVLV~   15 (226)
                      |....|||||++|.
T Consensus        18 l~f~sgq~~D~~v~   31 (82)
T PF12690_consen   18 LQFPSGQRYDFVVK   31 (82)
T ss_dssp             EEESSS--EEEEEE
T ss_pred             EEeCCCCEEEEEEE
Confidence            56789999999998


No 56 
>PF07732 Cu-oxidase_3:  Multicopper oxidase;  InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include:   Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase.  Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ].   In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08.  This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=35.95  E-value=36  Score=26.40  Aligned_cols=28  Identities=29%  Similarity=0.532  Sum_probs=23.9

Q ss_pred             EeccCceEEEEEEeCCCCCeeEEEEEec
Q 041358            3 TISPGQIIDVLIKANQIPNKYYMSAKAH   30 (226)
Q Consensus         3 ~I~pGQRydVLV~a~~~pg~Y~ira~~~   30 (226)
                      .|.||+++..-+++++.+|.||--....
T Consensus        73 ~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~  100 (117)
T PF07732_consen   73 PIAPGESFTYEFTANQQAGTYWYHSHVH  100 (117)
T ss_dssp             SBSTTEEEEEEEEESSCSEEEEEEECST
T ss_pred             eEEeecceeeeEeeeccccceeEeeCCC
Confidence            3789999999999998889999777654


No 57 
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=34.01  E-value=2.5e+02  Score=24.30  Aligned_cols=19  Identities=21%  Similarity=0.408  Sum_probs=16.6

Q ss_pred             eEEEeecCCEEEEEEEcCC
Q 041358           72 SVKVLEYNTAVEIVFQGTD   90 (226)
Q Consensus        72 ~~~~~~~g~~v~iv~~n~~   90 (226)
                      +...++.|..|++.+.+.+
T Consensus       140 n~l~lP~~~~v~~~~ts~D  158 (228)
T MTH00140        140 NRLVLPYSVDTRVLVTSAD  158 (228)
T ss_pred             CeEEEeeCcEEEEEEEcCc
Confidence            4789999999999999873


No 58 
>TIGR03121 one_C_dehyd_A formylmethanofuran dehydrogenase subunit A. Members of this largely archaeal protein family are subunit A of the formylmethanofuran dehydrogenase. Nomenclature in some bacteria may reflect inclusion of the formyltransferase described by TIGR03119 as part of the complex, and therefore call this protein formyltransferase/hydrolase complex Fhc subunit A. Note that this model does not distinguish tungsten (FwdA) from molybdenum-containing (FmdA) forms of this enzyme; a single gene from this family is expressed constitutively in Methanobacterium thermoautotrophicum, which has both tungsten and molybdenum forms and may work interchangeably.
Probab=30.85  E-value=16  Score=36.32  Aligned_cols=12  Identities=33%  Similarity=0.689  Sum_probs=10.4

Q ss_pred             CcCcceeecCce
Q 041358           94 GTDHPMHLHGYS  105 (226)
Q Consensus        94 ~~~HP~HlHG~~  105 (226)
                      ..+||+|+|++.
T Consensus       226 ~lph~~h~H~nn  237 (556)
T TIGR03121       226 GLPHSIHVHCNN  237 (556)
T ss_pred             CCCceEEEecCC
Confidence            458999999987


No 59 
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=28.93  E-value=1.9e+02  Score=24.74  Aligned_cols=17  Identities=12%  Similarity=0.055  Sum_probs=14.6

Q ss_pred             EEEeecCCEEEEEEEcC
Q 041358           73 VKVLEYNTAVEIVFQGT   89 (226)
Q Consensus        73 ~~~~~~g~~v~iv~~n~   89 (226)
                      .+.++.|..|++.+...
T Consensus       131 ~l~iP~g~~v~~~ltS~  147 (217)
T TIGR01432       131 YLNIPKDRPVLFKLQSA  147 (217)
T ss_pred             cEEEECCCEEEEEEECC
Confidence            67889999999998876


No 60 
>PF06775 Seipin:  Putative adipose-regulatory protein (Seipin);  InterPro: IPR009617 Seipin is a protein of approximately 400 residues in humans, which is the product of a gene homologous to the murine guanine nucleotide-binding protein (G protein) gamma-3 linked gene. This gene is implicated in the regulation of body fat distribution and insulin resistance and particularly in the auto-immune disease Berardinelli-Seip congenital lipodystrophy type 2. Seipin has no similarity with other known proteins or consensus motifs that might predict its function, but it is predicted to contain two transmembrane domains at residues 28-49 and 237-258, in humans, and a third transmembrane domain might be present at residues 155-173. Seipin may also be implicated in Silver spastic paraplegia syndrome and distal hereditary motor neuropathy type V [].
Probab=28.79  E-value=72  Score=26.99  Aligned_cols=47  Identities=21%  Similarity=0.324  Sum_probs=27.3

Q ss_pred             EeccCceEEEEEEeC-------CCCCeeEEEEEeccCCCccCCCCCceEEEEEec
Q 041358            3 TISPGQIIDVLIKAN-------QIPNKYYMSAKAHSSATDVYDDNTTTTAIVQYE   50 (226)
Q Consensus         3 ~I~pGQRydVLV~a~-------~~pg~Y~ira~~~~~~~~~~~~~~~~~AILrY~   50 (226)
                      .+.+||.|||.|+..       .+-|.|-+.++..+..... -.....-++|+|.
T Consensus        52 ~l~~~q~Ydv~v~L~lP~S~~N~~lG~Fmv~l~l~s~~~~~-l~~s~Rp~~l~y~  105 (199)
T PF06775_consen   52 LLPPGQPYDVSVELELPESPYNRDLGMFMVSLELLSANGKV-LASSSRPAMLPYR  105 (199)
T ss_pred             ccCCCceEEEEEEEEeCCCCCcCCCCeEEEEEEEEcCCCcE-EEEEecceecccC
Confidence            467999999998753       2236777777665432210 0122344666665


No 61 
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=28.08  E-value=1.9e+02  Score=25.19  Aligned_cols=18  Identities=11%  Similarity=0.172  Sum_probs=14.8

Q ss_pred             eEEEeecCCEEEEEEEcC
Q 041358           72 SVKVLEYNTAVEIVFQGT   89 (226)
Q Consensus        72 ~~~~~~~g~~v~iv~~n~   89 (226)
                      +...++.|+.|++.+...
T Consensus       139 nel~lP~g~pV~~~ltS~  156 (226)
T TIGR01433       139 NEIAFPVNTPINFKITSN  156 (226)
T ss_pred             ceEEEECCCEEEEEEEEC
Confidence            367888999999988876


No 62 
>PF10633 NPCBM_assoc:  NPCBM-associated, NEW3 domain of alpha-galactosidase;  InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=27.90  E-value=85  Score=22.07  Aligned_cols=27  Identities=22%  Similarity=0.596  Sum_probs=15.4

Q ss_pred             EeccCceEEEE--EEe--CCCCCeeEEEEEe
Q 041358            3 TISPGQIIDVL--IKA--NQIPNKYYMSAKA   29 (226)
Q Consensus         3 ~I~pGQRydVL--V~a--~~~pg~Y~ira~~   29 (226)
                      .|.+|+...+-  |+.  +..+|+|.|.+..
T Consensus        45 ~l~pG~s~~~~~~V~vp~~a~~G~y~v~~~a   75 (78)
T PF10633_consen   45 SLPPGESVTVTFTVTVPADAAPGTYTVTVTA   75 (78)
T ss_dssp             -B-TTSEEEEEEEEEE-TT--SEEEEEEEEE
T ss_pred             cCCCCCEEEEEEEEECCCCCCCceEEEEEEE
Confidence            47788655444  444  3346999988765


No 63 
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=23.35  E-value=4.5e+02  Score=22.03  Aligned_cols=17  Identities=18%  Similarity=0.194  Sum_probs=14.5

Q ss_pred             EEEeecCCEEEEEEEcC
Q 041358           73 VKVLEYNTAVEIVFQGT   89 (226)
Q Consensus        73 ~~~~~~g~~v~iv~~n~   89 (226)
                      ...++.|..|++.+...
T Consensus        74 ~LvLP~g~~Vr~~lTS~   90 (162)
T PTZ00047         74 RLTLPTRTHIRFLITAT   90 (162)
T ss_pred             CEEEeCCCEEEEEEEeC
Confidence            67789999999998875


No 64 
>TIGR03833 conserved hypothetical protein. A pair of adjacent genes, ablAB (acetyl-beta-lysine biosynthesis) encodes lysine 2,3-aminomutase and beta-lysine acetyltransferase in methanogenic archaea. Homologous pairs, possibly with identical function, occur in a wide range of species, including Bacillus subtilis. This model describes a conserved hypothetical protein, small in size, with a phylogenetic distribution moderately well correlated to that of the acetyltransferase family. This protein family is also described as DUF2196 and COG4895. The function is unknown.
Probab=21.33  E-value=95  Score=21.93  Aligned_cols=20  Identities=35%  Similarity=0.669  Sum_probs=16.9

Q ss_pred             EeccCceEEEEEEeCCCCCe
Q 041358            3 TISPGQIIDVLIKANQIPNK   22 (226)
Q Consensus         3 ~I~pGQRydVLV~a~~~pg~   22 (226)
                      .|.+|..++++++.+|..|.
T Consensus         7 ~I~~G~~V~IvlK~DQ~tG~   26 (62)
T TIGR03833         7 NIKPGLSVDIVLKQDQRTGK   26 (62)
T ss_pred             ccCCCCEEEEEEeccCCCCc
Confidence            47899999999999997654


Done!