Query 041360
Match_columns 561
No_of_seqs 260 out of 2677
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 06:20:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041360.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041360hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 5.7E-59 1.2E-63 502.4 22.1 519 1-553 292-846 (889)
2 PLN03210 Resistant to P. syrin 100.0 3.2E-48 7E-53 441.2 34.5 503 1-552 327-909 (1153)
3 PF00931 NB-ARC: NB-ARC domain 99.9 1E-23 2.2E-28 206.5 9.3 150 1-152 132-284 (287)
4 PLN00113 leucine-rich repeat r 99.8 7.9E-20 1.7E-24 208.7 17.3 181 223-414 118-315 (968)
5 PLN00113 leucine-rich repeat r 99.8 1.7E-19 3.8E-24 205.9 18.0 303 223-548 236-583 (968)
6 KOG0444 Cytoskeletal regulator 99.8 4.4E-21 9.6E-26 189.9 -4.0 306 223-550 55-376 (1255)
7 PLN03210 Resistant to P. syrin 99.8 2.2E-18 4.8E-23 197.3 16.0 313 219-551 586-945 (1153)
8 KOG0444 Cytoskeletal regulator 99.7 9.7E-20 2.1E-24 180.5 -2.5 262 223-528 103-380 (1255)
9 KOG4194 Membrane glycoprotein 99.7 8.4E-18 1.8E-22 165.8 7.5 300 223-543 102-446 (873)
10 KOG4194 Membrane glycoprotein 99.7 2.7E-18 5.8E-23 169.2 2.6 305 223-546 78-426 (873)
11 KOG0472 Leucine-rich repeat pr 99.7 5.3E-18 1.2E-22 160.2 -1.6 179 223-414 91-304 (565)
12 KOG0472 Leucine-rich repeat pr 99.6 3.4E-18 7.4E-23 161.5 -7.3 248 223-491 45-306 (565)
13 KOG0617 Ras suppressor protein 99.6 3.4E-17 7.4E-22 137.2 -2.7 156 236-404 24-192 (264)
14 KOG0618 Serine/threonine phosp 99.5 3.4E-15 7.4E-20 155.2 0.8 255 223-523 219-488 (1081)
15 KOG0617 Ras suppressor protein 99.5 4.5E-16 9.8E-21 130.6 -4.7 140 223-366 33-186 (264)
16 KOG0618 Serine/threonine phosp 99.4 3.8E-15 8.2E-20 154.9 -3.9 98 224-324 46-145 (1081)
17 PRK15387 E3 ubiquitin-protein 99.4 2.4E-12 5.2E-17 137.9 15.0 246 225-522 203-456 (788)
18 PRK15387 E3 ubiquitin-protein 99.4 3.5E-12 7.5E-17 136.7 14.0 229 223-496 222-458 (788)
19 PRK15370 E3 ubiquitin-protein 99.3 2.5E-12 5.4E-17 138.6 9.7 100 223-332 199-299 (754)
20 KOG4658 Apoptotic ATPase [Sign 99.3 2E-11 4.4E-16 133.7 12.2 268 235-556 513-790 (889)
21 PRK15370 E3 ubiquitin-protein 99.3 2.4E-11 5.2E-16 131.1 11.6 248 223-522 178-426 (754)
22 KOG4237 Extracellular matrix p 99.1 9.8E-12 2.1E-16 118.1 -2.3 109 223-333 67-181 (498)
23 KOG4237 Extracellular matrix p 99.1 7E-12 1.5E-16 119.1 -3.4 128 234-364 57-199 (498)
24 KOG0532 Leucine-rich repeat (L 99.0 3.9E-11 8.4E-16 119.2 -0.9 168 224-406 76-255 (722)
25 PF14580 LRR_9: Leucine-rich r 99.0 4.3E-10 9.3E-15 99.1 4.8 58 270-328 41-100 (175)
26 cd00116 LRR_RI Leucine-rich re 99.0 6.1E-10 1.3E-14 110.8 5.4 62 268-329 78-150 (319)
27 PF14580 LRR_9: Leucine-rich r 98.9 9.4E-10 2E-14 96.9 4.5 125 223-361 19-148 (175)
28 KOG0532 Leucine-rich repeat (L 98.8 3.4E-10 7.5E-15 112.6 -2.6 174 227-415 54-242 (722)
29 cd00116 LRR_RI Leucine-rich re 98.8 9.8E-09 2.1E-13 102.1 7.4 161 223-398 51-234 (319)
30 KOG1259 Nischarin, modulator o 98.6 4.9E-09 1.1E-13 96.4 -1.1 128 223-366 284-412 (490)
31 COG4886 Leucine-rich repeat (L 98.6 4E-08 8.8E-13 100.7 5.5 166 224-415 117-285 (394)
32 KOG1259 Nischarin, modulator o 98.6 1E-08 2.2E-13 94.4 -0.5 123 271-402 284-416 (490)
33 PF13855 LRR_8: Leucine rich r 98.6 5.4E-08 1.2E-12 70.3 3.3 58 246-305 2-60 (61)
34 COG4886 Leucine-rich repeat (L 98.5 9.3E-08 2E-12 98.1 5.6 170 243-439 114-286 (394)
35 PF13855 LRR_8: Leucine rich r 98.5 1.5E-07 3.3E-12 67.9 3.7 58 271-328 1-61 (61)
36 KOG3207 Beta-tubulin folding c 98.4 4.6E-08 1E-12 94.8 -0.1 156 223-398 121-284 (505)
37 KOG3207 Beta-tubulin folding c 98.4 8.6E-08 1.9E-12 92.9 0.6 177 223-414 146-333 (505)
38 PLN03150 hypothetical protein; 98.3 2.1E-06 4.5E-11 92.6 9.5 80 247-328 420-502 (623)
39 PLN03150 hypothetical protein; 98.2 5.5E-06 1.2E-10 89.4 9.0 101 225-327 420-526 (623)
40 PF12799 LRR_4: Leucine Rich r 98.2 3E-06 6.6E-11 56.0 4.4 37 272-308 2-38 (44)
41 KOG3665 ZYG-1-like serine/thre 98.0 3.2E-06 7E-11 91.0 3.7 134 223-365 122-262 (699)
42 KOG1909 Ran GTPase-activating 98.0 2.5E-06 5.4E-11 80.8 2.4 252 243-523 28-310 (382)
43 KOG4341 F-box protein containi 98.0 2.2E-07 4.8E-12 89.7 -4.8 104 223-326 138-252 (483)
44 PF12799 LRR_4: Leucine Rich r 98.0 1E-05 2.2E-10 53.5 4.3 39 294-332 1-40 (44)
45 KOG3665 ZYG-1-like serine/thre 98.0 4.7E-06 1E-10 89.7 3.7 141 244-398 121-263 (699)
46 KOG2120 SCF ubiquitin ligase, 97.9 9.2E-07 2E-11 81.7 -1.9 55 272-326 186-244 (419)
47 KOG0531 Protein phosphatase 1, 97.9 1.5E-06 3.3E-11 89.4 -2.3 125 224-365 73-198 (414)
48 KOG4579 Leucine-rich repeat (L 97.8 1.9E-06 4.1E-11 70.5 -1.6 108 225-334 29-141 (177)
49 KOG0531 Protein phosphatase 1, 97.8 2.8E-06 6E-11 87.4 -1.4 104 223-331 95-201 (414)
50 KOG1859 Leucine-rich repeat pr 97.8 7.9E-07 1.7E-11 91.5 -5.9 117 272-397 165-291 (1096)
51 KOG2120 SCF ubiquitin ligase, 97.8 2.6E-06 5.6E-11 78.9 -2.2 40 349-395 309-348 (419)
52 KOG1859 Leucine-rich repeat pr 97.6 1E-06 2.2E-11 90.7 -7.4 127 223-365 164-291 (1096)
53 KOG2982 Uncharacterized conser 97.6 1.2E-05 2.5E-10 74.6 -0.4 60 268-327 68-132 (418)
54 KOG1644 U2-associated snRNP A' 97.5 0.00022 4.7E-09 62.8 5.9 101 223-325 42-149 (233)
55 PRK15386 type III secretion pr 97.5 0.00035 7.5E-09 69.7 8.0 109 243-365 50-168 (426)
56 KOG4579 Leucine-rich repeat (L 97.4 2.8E-05 6.1E-10 63.8 -0.3 97 243-341 25-125 (177)
57 KOG4341 F-box protein containi 97.2 2E-05 4.3E-10 76.6 -4.0 282 245-550 138-440 (483)
58 KOG1909 Ran GTPase-activating 97.2 0.00024 5.1E-09 67.7 3.2 134 223-365 157-310 (382)
59 KOG2982 Uncharacterized conser 97.2 0.00034 7.4E-09 65.2 3.9 85 243-329 69-159 (418)
60 PRK04841 transcriptional regul 97.2 0.0077 1.7E-07 69.1 15.6 170 1-200 155-333 (903)
61 PRK15386 type III secretion pr 97.1 0.001 2.2E-08 66.4 7.0 98 223-332 52-172 (426)
62 KOG1644 U2-associated snRNP A' 97.1 0.00076 1.6E-08 59.5 5.1 104 245-362 42-149 (233)
63 COG5238 RNA1 Ran GTPase-activa 97.0 0.00081 1.8E-08 61.9 4.7 246 244-522 29-314 (388)
64 KOG2123 Uncharacterized conser 96.7 0.00011 2.4E-09 67.6 -3.8 80 243-327 17-99 (388)
65 KOG2739 Leucine-rich acidic nu 96.5 0.0012 2.7E-08 60.6 1.6 83 244-330 42-130 (260)
66 KOG2739 Leucine-rich acidic nu 96.2 0.0025 5.5E-08 58.7 2.3 109 223-332 43-159 (260)
67 KOG3864 Uncharacterized conser 96.2 0.0024 5.3E-08 56.4 1.8 88 430-523 101-188 (221)
68 PF00560 LRR_1: Leucine Rich R 95.9 0.0029 6.2E-08 34.7 0.6 21 272-292 1-21 (22)
69 KOG1947 Leucine rich repeat pr 95.9 0.0015 3.3E-08 68.8 -1.0 82 244-326 187-279 (482)
70 PF00560 LRR_1: Leucine Rich R 95.8 0.0034 7.4E-08 34.4 0.5 21 317-337 1-21 (22)
71 KOG2123 Uncharacterized conser 95.3 0.0014 3.1E-08 60.6 -3.3 108 268-391 16-123 (388)
72 COG5238 RNA1 Ran GTPase-activa 94.6 0.044 9.4E-07 50.9 4.3 164 223-398 30-227 (388)
73 COG3903 Predicted ATPase [Gene 94.2 0.21 4.5E-06 49.5 8.2 186 2-202 121-317 (414)
74 PF13504 LRR_7: Leucine rich r 94.2 0.032 7E-07 28.3 1.4 16 317-332 2-17 (17)
75 PF13504 LRR_7: Leucine rich r 94.0 0.036 7.7E-07 28.1 1.4 16 272-287 2-17 (17)
76 PF13306 LRR_5: Leucine rich r 91.6 0.36 7.8E-06 40.3 5.2 78 243-325 10-90 (129)
77 smart00369 LRR_TYP Leucine-ric 90.9 0.23 5E-06 28.3 2.2 21 315-335 1-21 (26)
78 smart00370 LRR Leucine-rich re 90.9 0.23 5E-06 28.3 2.2 21 315-335 1-21 (26)
79 PRK00080 ruvB Holliday junctio 90.4 8.7 0.00019 38.1 14.5 136 18-179 172-310 (328)
80 TIGR00635 ruvB Holliday juncti 90.3 8.9 0.00019 37.5 14.4 136 18-179 151-289 (305)
81 KOG3864 Uncharacterized conser 89.9 0.048 1E-06 48.5 -1.8 69 478-549 121-189 (221)
82 smart00370 LRR Leucine-rich re 89.8 0.32 7E-06 27.6 2.3 21 270-290 1-21 (26)
83 smart00369 LRR_TYP Leucine-ric 89.8 0.32 7E-06 27.6 2.3 21 270-290 1-21 (26)
84 PF13306 LRR_5: Leucine rich r 88.1 2 4.3E-05 35.7 7.0 102 223-332 12-118 (129)
85 KOG1947 Leucine rich repeat pr 87.6 0.2 4.2E-06 52.8 0.5 85 243-327 212-306 (482)
86 KOG0473 Leucine-rich repeat pr 85.8 0.029 6.3E-07 50.8 -5.7 79 224-305 43-122 (326)
87 KOG0473 Leucine-rich repeat pr 84.0 0.032 7E-07 50.5 -6.2 83 243-328 40-123 (326)
88 TIGR03015 pepcterm_ATPase puta 81.7 8.1 0.00018 37.0 8.8 70 19-88 185-266 (269)
89 PRK06893 DNA replication initi 79.7 6.2 0.00013 36.9 6.9 59 9-69 145-203 (229)
90 COG2909 MalT ATP-dependent tra 76.5 29 0.00062 38.4 11.3 144 25-201 193-340 (894)
91 smart00367 LRR_CC Leucine-rich 74.2 1.8 3.8E-05 24.6 1.0 16 482-497 2-17 (26)
92 smart00364 LRR_BAC Leucine-ric 72.0 2.6 5.7E-05 24.0 1.3 18 271-288 2-19 (26)
93 PF01637 Arch_ATPase: Archaeal 69.0 11 0.00024 34.8 5.8 50 19-68 184-233 (234)
94 PRK09087 hypothetical protein; 67.8 35 0.00076 31.7 8.7 72 15-87 142-221 (226)
95 COG3899 Predicted ATPase [Gene 66.9 90 0.002 35.5 13.2 119 16-145 209-334 (849)
96 smart00365 LRR_SD22 Leucine-ri 66.0 4.9 0.00011 22.9 1.6 16 315-330 1-16 (26)
97 PF13516 LRR_6: Leucine Rich r 60.1 5.6 0.00012 21.9 1.2 11 295-305 3-13 (24)
98 smart00368 LRR_RI Leucine rich 54.2 11 0.00023 21.9 1.7 13 271-283 2-14 (28)
99 PRK00411 cdc6 cell division co 47.0 3.2E+02 0.007 27.6 12.7 137 19-177 200-356 (394)
100 TIGR03420 DnaA_homol_Hda DnaA 34.6 1.4E+02 0.0029 27.4 6.9 52 18-70 151-202 (226)
101 PRK08084 DNA replication initi 34.6 1.4E+02 0.003 27.9 6.9 53 15-68 156-208 (235)
102 PRK09112 DNA polymerase III su 32.9 1.2E+02 0.0026 30.4 6.5 48 19-69 193-240 (351)
103 KOG4308 LRR-containing protein 32.0 2.7 5.9E-05 43.8 -5.5 141 245-399 144-304 (478)
104 PRK08727 hypothetical protein; 31.2 1.5E+02 0.0033 27.5 6.6 49 17-66 153-201 (233)
105 PRK07471 DNA polymerase III su 30.8 1.4E+02 0.0031 30.1 6.6 46 19-69 193-238 (365)
106 TIGR02397 dnaX_nterm DNA polym 30.1 4.9E+02 0.011 25.8 10.6 52 19-71 169-220 (355)
107 PRK06645 DNA polymerase III su 28.8 1.3E+02 0.0027 32.0 6.1 65 1-66 162-226 (507)
108 PF14516 AAA_35: AAA-like doma 28.4 5.9E+02 0.013 25.2 10.9 55 17-76 192-246 (331)
109 PRK14961 DNA polymerase III su 27.8 2.5E+02 0.0054 28.2 7.9 48 19-67 171-218 (363)
110 PRK08903 DnaA regulatory inact 24.4 2.6E+02 0.0056 25.7 6.9 55 18-73 149-203 (227)
111 TIGR01242 26Sp45 26S proteasom 24.2 4.7E+02 0.01 26.2 9.2 44 18-63 285-328 (364)
112 PF14050 Nudc_N: N-terminal co 22.2 1.5E+02 0.0034 21.1 3.6 29 48-76 3-31 (62)
113 PRK05642 DNA replication initi 21.6 3.1E+02 0.0066 25.6 6.7 52 17-69 157-208 (234)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=5.7e-59 Score=502.37 Aligned_cols=519 Identities=25% Similarity=0.331 Sum_probs=375.6
Q ss_pred CEEeeccchhhhcccCCcceEecCCCCHHHHHHHHHHHhCCC--CCCCCchHHHHHHHHHcCCChHHHHHHHHHHcCC-C
Q 041360 1 MILTSRNRDLLERDMNSQKNFLIEVLSKEEALQLFENILGDS--TKTSTIQPIADEIVKRCGGLPVAVTTVANALKSK-S 77 (561)
Q Consensus 1 IlvTTR~~~va~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~--~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~-~ 77 (561)
|++|||++.|+..++++...+++++|.++|||+||++.||.. ..++.++++|+++|++|+|+|||+.++|+.|+.+ +
T Consensus 292 vvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t 371 (889)
T KOG4658|consen 292 VVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKT 371 (889)
T ss_pred EEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCc
Confidence 689999999987668888999999999999999999999843 3445589999999999999999999999999987 8
Q ss_pred HHHHHHHHHHHhhCCCCCCCCchhhHHHHHHHHHHhcCChHHHHHHHhhcccCCCcccCHHHHHHHHhhcCcccccccHH
Q 041360 78 LDIWKDALSQLRSSNPREIDGMDKNVYTSIELSYNLLASKEAKSLFRLCGLYNEGHAIQVASLLRYGMGWGLFKNVYTLE 157 (561)
Q Consensus 78 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~~~~~~l~~~w~a~g~~~~~~~~~ 157 (561)
.++|+++++.+.+....+.+.+...+..++++||+.||++ +|.||+|||.||+||.|+++.++.+|+||||+......+
T Consensus 372 ~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~-lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~ 450 (889)
T KOG4658|consen 372 VQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEE-LKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGE 450 (889)
T ss_pred HHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHH-HHHHHHhhccCCcccccchHHHHHHHHhccCcCcccccc
Confidence 8899999999988766666667899999999999999975 999999999999999999999999999999998877788
Q ss_pred HHHHHHHHHHHHHHHcCcccccC---CCCceehhHHHHHHHHHHhh-----cCceEEecCcchh--hhhhhcccCCCceE
Q 041360 158 EARSRVHRLIDNLKSSCLLLDGD---GKDEVKMHDVIHVVAVSIAT-----EEQMFNIPNVADV--EKKMEETKQKGPIA 227 (561)
Q Consensus 158 ~~~~~~~~~i~~L~~~sll~~~~---~~~~~~mh~lv~~~~~~~~~-----~e~~~~~~~~~~~--~~~~~~~~~~~l~~ 227 (561)
.+++.+++++++||++++++..+ ....|+|||+||++|.+++. +++ ..+.++... .....+| ..+|+
T Consensus 451 ~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~ias~~~~~~e~-~iv~~~~~~~~~~~~~~~--~~~rr 527 (889)
T KOG4658|consen 451 TAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALWIASDFGKQEEN-QIVSDGVGLSEIPQVKSW--NSVRR 527 (889)
T ss_pred chhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHHHhccccccccc-eEEECCcCccccccccch--hheeE
Confidence 88999999999999999998764 44789999999999999999 555 333322100 1112233 57899
Q ss_pred EEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCC-CCCCCchhhcCCCCCcEEEeCCCCC
Q 041360 228 ISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGV-RFSSLPSSLGRLFNLQTLCLGGCRL 306 (561)
Q Consensus 228 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~-~i~~lp~~i~~L~~L~~L~l~~~~l 306 (561)
+++.++.+..++....+++|++|.+.++...+..++..+|..|++||+|||++| .+.++|.+|+.|.|||||+++++.+
T Consensus 528 ~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I 607 (889)
T KOG4658|consen 528 MSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI 607 (889)
T ss_pred EEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc
Confidence 999999999999988999999999999862267888999999999999999987 5888999999999999999999999
Q ss_pred CC-cccccCCCCCcEEEccCCc-CcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhcCC
Q 041360 307 KD-IAIVGQLKKLEILSFRDSY-IEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGL 384 (561)
Q Consensus 307 ~~-p~~i~~L~~L~~L~l~~~~-~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l 384 (561)
++ |..+++|++|++||+..+. ...+|.. ...|++|++|.+...... .+...+.++.++
T Consensus 608 ~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i--------------~~~L~~Lr~L~l~~s~~~------~~~~~l~el~~L 667 (889)
T KOG4658|consen 608 SHLPSGLGNLKKLIYLNLEVTGRLESIPGI--------------LLELQSLRVLRLPRSALS------NDKLLLKELENL 667 (889)
T ss_pred cccchHHHHHHhhheeccccccccccccch--------------hhhcccccEEEeeccccc------cchhhHHhhhcc
Confidence 99 9999999999999999884 3333322 344666666665544311 122344566666
Q ss_pred CCCcEEEEeeccCcccCcccccccccEEEEEe---cccccc---CCCCccccceEEEecCCccchhh-hhhh----HHH-
Q 041360 385 SKLTTLEIQVRDAQILPQDLVLVELQRYKICI---GEAWRM---WGVTSEISRLVRLHGLENVSTLL-ENYG----MKM- 452 (561)
Q Consensus 385 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~---~~~~~~---~~~~~~~~~l~~L~~~~~~~~~~-~~~~----~~~- 452 (561)
++|+.+.++..+...+.......+|.++.... +...+. ....+..+ ..|.+.+|. ... ...+ ...
T Consensus 668 e~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L--~~L~i~~~~-~~e~~~~~~~~~~~~~ 744 (889)
T KOG4658|consen 668 EHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNL--EELSILDCG-ISEIVIEWEESLIVLL 744 (889)
T ss_pred cchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceeecccccccCc--ceEEEEcCC-Cchhhcccccccchhh
Confidence 66666666543331111111222222111100 000000 11111111 222222111 100 0000 001
Q ss_pred hhccccceeeccccCcccccccccCCCCCCCccEEEEecCCccchhhcccCcc-----cCCcCcccccc-ccccccc--c
Q 041360 453 LLKEAEEIHLNELKGVQNAVHELDDGEGFPRLKHLRVESCSEILHIVGSVGRV-----RRKVFPLLESL-SLKKASF--V 524 (561)
Q Consensus 453 ll~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~-----~~~~~~~L~~L-~l~~c~~--~ 524 (561)
.|+++..+.+.+|...+.+.+.. -.|+|+.|.+..|+.++++.+..... ....|.+++.+ .+.+.+. .
T Consensus 745 ~f~~l~~~~~~~~~~~r~l~~~~----f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~ 820 (889)
T KOG4658|consen 745 CFPNLSKVSILNCHMLRDLTWLL----FAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQ 820 (889)
T ss_pred hHHHHHHHHhhccccccccchhh----ccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCce
Confidence 14666777777777777776643 37888888888888887766542211 14566667777 4666665 5
Q ss_pred ccCCCCCCCCCCCCcccCCCccccccccc
Q 041360 525 ILHGQKPTAASKGPEREKPTTSLGFNEII 553 (561)
Q Consensus 525 ~~~~~~~~~~l~~L~~L~i~~c~~l~~~~ 553 (561)
++..++++. .|+.+.|..||++..++
T Consensus 821 i~~~~l~~~---~l~~~~ve~~p~l~~~P 846 (889)
T KOG4658|consen 821 LYWLPLSFL---KLEELIVEECPKLGKLP 846 (889)
T ss_pred eEecccCcc---chhheehhcCcccccCc
Confidence 555554432 37777777777766544
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=3.2e-48 Score=441.25 Aligned_cols=503 Identities=19% Similarity=0.280 Sum_probs=372.0
Q ss_pred CEEeeccchhhhcccCCcceEecCCCCHHHHHHHHHHHhCC-CCCCCCchHHHHHHHHHcCCChHHHHHHHHHHcCCCHH
Q 041360 1 MILTSRNRDLLERDMNSQKNFLIEVLSKEEALQLFENILGD-STKTSTIQPIADEIVKRCGGLPVAVTTVANALKSKSLD 79 (561)
Q Consensus 1 IlvTTR~~~va~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~-~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~ 79 (561)
||||||++.|+.. .+..++|+++.|++++||+||+++||. ..+++++.+++++||++|+|+||||+++|++|++++..
T Consensus 327 IIiTTrd~~vl~~-~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~ 405 (1153)
T PLN03210 327 IIVITKDKHFLRA-HGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKE 405 (1153)
T ss_pred EEEEeCcHHHHHh-cCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHH
Confidence 7999999999853 566789999999999999999999994 44556788999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCCCCCchhhHHHHHHHHHHhcCChHHHHHHHhhcccCCCcccCHHHHHHHHhhcCcccccccHHHH
Q 041360 80 IWKDALSQLRSSNPREIDGMDKNVYTSIELSYNLLASKEAKSLFRLCGLYNEGHAIQVASLLRYGMGWGLFKNVYTLEEA 159 (561)
Q Consensus 80 ~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~~~~~~l~~~w~a~g~~~~~~~~~~~ 159 (561)
+|+.+++++.+.+ ..++..++++||+.|++++.|.||+++|+||.+..++ .+..|.+.+....
T Consensus 406 ~W~~~l~~L~~~~-------~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~------- 468 (1153)
T PLN03210 406 DWMDMLPRLRNGL-------DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV------- 468 (1153)
T ss_pred HHHHHHHHHHhCc-------cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-------
Confidence 9999999987652 4679999999999998644899999999999875443 3555666654321
Q ss_pred HHHHHHHHHHHHHcCcccccCCCCceehhHHHHHHHHHHhhcCc-----eEEecCcchhhhhhhcccC-CCceEEEccCC
Q 041360 160 RSRVHRLIDNLKSSCLLLDGDGKDEVKMHDVIHVVAVSIATEEQ-----MFNIPNVADVEKKMEETKQ-KGPIAISLPHR 233 (561)
Q Consensus 160 ~~~~~~~i~~L~~~sll~~~~~~~~~~mh~lv~~~~~~~~~~e~-----~~~~~~~~~~~~~~~~~~~-~~l~~l~l~~~ 233 (561)
...++.|+++||++.. .+++.|||++|+||+.+++++. +..+++.+++...++.-.+ .+++.+++..+
T Consensus 469 ----~~~l~~L~~ksLi~~~--~~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~ 542 (1153)
T PLN03210 469 ----NIGLKNLVDKSLIHVR--EDIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDID 542 (1153)
T ss_pred ----hhChHHHHhcCCEEEc--CCeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccC
Confidence 1247789999999765 3579999999999999987652 3344555555544433222 44555554433
Q ss_pred Ccc---------------------------------ccCCcc-CC-CCccEEEeeccCCCCccccHHHHcCCCCccEEEe
Q 041360 234 DIQ---------------------------------ELPERL-QC-PNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSL 278 (561)
Q Consensus 234 ~~~---------------------------------~l~~~~-~~-~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l 278 (561)
.+. .+|..+ .+ .+||.|.+.++. +..+|..+ .+.+|+.|++
T Consensus 543 ~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~--l~~lP~~f--~~~~L~~L~L 618 (1153)
T PLN03210 543 EIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYP--LRCMPSNF--RPENLVKLQM 618 (1153)
T ss_pred ccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCC--CCCCCCcC--CccCCcEEEC
Confidence 222 122222 11 346666665553 66677664 5688899999
Q ss_pred cCCCCCCCchhhcCCCCCcEEEeCCCC-CCCcccccCCCCCcEEEccCC-cCcccChhhhccccc-----------cccC
Q 041360 279 TGVRFSSLPSSLGRLFNLQTLCLGGCR-LKDIAIVGQLKKLEILSFRDS-YIEELPHEIGQLTRL-----------VVIA 345 (561)
Q Consensus 279 ~~~~i~~lp~~i~~L~~L~~L~l~~~~-l~~p~~i~~L~~L~~L~l~~~-~~~~lp~~i~~L~~L-----------~~l~ 345 (561)
+++.+..+|.++..+.+|++|+|++|. +..++.++.+++|++|++++| .+..+|..+++|++| +.+|
T Consensus 619 ~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp 698 (1153)
T PLN03210 619 QGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILP 698 (1153)
T ss_pred cCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccC
Confidence 998888888888899999999999886 555556888999999999988 688889888887777 3445
Q ss_pred chhhcCCCCCcEEEccCCcccccccCCCcccchHhhcCCCCCcEEEEeeccCcccCcccccccccEEEEEeccccccCC-
Q 041360 346 PNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIQVRDAQILPQDLVLVELQRYKICIGEAWRMWG- 424 (561)
Q Consensus 346 ~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~- 424 (561)
.. + ++++|+.|++++|......+. ...+|+.|+++.+.+..+|....+++|+.|.++......-|.
T Consensus 699 ~~-i-~l~sL~~L~Lsgc~~L~~~p~-----------~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~ 765 (1153)
T PLN03210 699 TG-I-NLKSLYRLNLSGCSRLKSFPD-----------ISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWER 765 (1153)
T ss_pred Cc-C-CCCCCCEEeCCCCCCcccccc-----------ccCCcCeeecCCCccccccccccccccccccccccchhhcccc
Confidence 43 2 788999999988865433221 235889999999999889988888899988875422110010
Q ss_pred -------CCccccceEEEecCCccchhhhhhhHHHhhccccceeeccccCcccccccccCCCCCCCccEEEEecCCccch
Q 041360 425 -------VTSEISRLVRLHGLENVSTLLENYGMKMLLKEAEEIHLNELKGVQNAVHELDDGEGFPRLKHLRVESCSEILH 497 (561)
Q Consensus 425 -------~~~~~~~l~~L~~~~~~~~~~~~~~~~~ll~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 497 (561)
......++..|++.+|......|.++..+ ++|+.|++.+|..++.+|.. ..+++|+.|++++|.+++.
T Consensus 766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L-~~L~~L~Ls~C~~L~~LP~~----~~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNL-HKLEHLEIENCINLETLPTG----INLESLESLDLSGCSRLRT 840 (1153)
T ss_pred ccccchhhhhccccchheeCCCCCCccccChhhhCC-CCCCEEECCCCCCcCeeCCC----CCccccCEEECCCCCcccc
Confidence 01122456677776654344467777776 99999999999988888764 3588999999999988877
Q ss_pred hhcccC----------c-----ccCCcCccccccccccccc--cccCCCCCCCCCCCCcccCCCcccccccc
Q 041360 498 IVGSVG----------R-----VRRKVFPLLESLSLKKASF--VILHGQKPTAASKGPEREKPTTSLGFNEI 552 (561)
Q Consensus 498 l~~~~~----------~-----~~~~~~~~L~~L~l~~c~~--~~~~~~~~~~~l~~L~~L~i~~c~~l~~~ 552 (561)
+|.... . .....+++|+.|.+.+|++ .++ .....+++|+.+.+.+|++|..+
T Consensus 841 ~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~---~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 841 FPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVS---LNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred ccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccC---cccccccCCCeeecCCCcccccc
Confidence 653210 0 0235678899999999998 443 33677889999999999998765
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.89 E-value=1e-23 Score=206.46 Aligned_cols=150 Identities=33% Similarity=0.582 Sum_probs=123.5
Q ss_pred CEEeeccchhhhcccCCcceEecCCCCHHHHHHHHHHHhCCCC--CCCCchHHHHHHHHHcCCChHHHHHHHHHHcCC-C
Q 041360 1 MILTSRNRDLLERDMNSQKNFLIEVLSKEEALQLFENILGDST--KTSTIQPIADEIVKRCGGLPVAVTTVANALKSK-S 77 (561)
Q Consensus 1 IlvTTR~~~va~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~--~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~-~ 77 (561)
||||||+..|+........+|++++|+.+||++||++.++... .++.+++.+++|+++|+|+||||.++|++|+.+ +
T Consensus 132 ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~ 211 (287)
T PF00931_consen 132 ILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKST 211 (287)
T ss_dssp EEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 6999999999753233368999999999999999999998433 455668899999999999999999999999754 7
Q ss_pred HHHHHHHHHHHhhCCCCCCCCchhhHHHHHHHHHHhcCChHHHHHHHhhcccCCCcccCHHHHHHHHhhcCcccc
Q 041360 78 LDIWKDALSQLRSSNPREIDGMDKNVYTSIELSYNLLASKEAKSLFRLCGLYNEGHAIQVASLLRYGMGWGLFKN 152 (561)
Q Consensus 78 ~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~~~~~~l~~~w~a~g~~~~ 152 (561)
..+|+++++++..... +..+....+..++.+||+.||++ +|.||+|||+||+++.|+++.++++|+++|+++.
T Consensus 212 ~~~w~~~~~~l~~~~~-~~~~~~~~~~~~l~~s~~~L~~~-~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 212 VDEWEEALEELENSLR-ESRDYDRSVFSALELSYDSLPDE-LRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp SSSHHHHHHHHHHCHT-CSSGSCHHHHHHHHHHHHSSHTC-CHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cccccccccccccccc-ccccccccccccceechhcCCcc-HHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 8899999999877742 22235788999999999999996 9999999999999999999999999999999874
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.83 E-value=7.9e-20 Score=208.74 Aligned_cols=181 Identities=24% Similarity=0.288 Sum_probs=95.7
Q ss_pred CCceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCC-CCchhhcCCCCCcEEEe
Q 041360 223 KGPIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFS-SLPSSLGRLFNLQTLCL 301 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~-~lp~~i~~L~~L~~L~l 301 (561)
.+++++++++|.+....+...+++|++|++++|. ....+|..+ +.+++|++|++++|.+. .+|..++++.+|++|++
T Consensus 118 ~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~-~~~~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 195 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNM-LSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL 195 (968)
T ss_pred CCCCEEECcCCccccccCccccCCCCEEECcCCc-ccccCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCCeeec
Confidence 4555666655555322222235556666666655 233445443 56666666666666654 35666666666666666
Q ss_pred CCCCCCC--cccccCCCCCcEEEccCCcCc-ccChhhhcccccc-----------ccCchhhcCCCCCcEEEccCCcccc
Q 041360 302 GGCRLKD--IAIVGQLKKLEILSFRDSYIE-ELPHEIGQLTRLV-----------VIAPNLISKFSQLEELYMGDSFSQW 367 (561)
Q Consensus 302 ~~~~l~~--p~~i~~L~~L~~L~l~~~~~~-~lp~~i~~L~~L~-----------~l~~~~i~~l~~L~~L~l~~~~~~~ 367 (561)
++|.+.. |..++++++|++|++++|.+. .+|..++++++|+ .+|. .++++++|++|++++|....
T Consensus 196 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~ 274 (968)
T PLN00113 196 ASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPS-SLGNLKNLQYLFLYQNKLSG 274 (968)
T ss_pred cCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccCh-hHhCCCCCCEEECcCCeeec
Confidence 6666543 556666666666666666544 4555565555552 2222 25566666666666554432
Q ss_pred cccCCCcccchHhhcCCCCCcEEEEeeccCc-ccCccc-ccccccEEEE
Q 041360 368 DKVEGGSNASLAELKGLSKLTTLEIQVRDAQ-ILPQDL-VLVELQRYKI 414 (561)
Q Consensus 368 ~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l 414 (561)
..+ ..+.++++|+.|+++.|.+. .+|..+ .+++|+.|++
T Consensus 275 ~~p--------~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l 315 (968)
T PLN00113 275 PIP--------PSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHL 315 (968)
T ss_pred cCc--------hhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEEC
Confidence 222 34445555555555555443 222221 3445555554
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.82 E-value=1.7e-19 Score=205.93 Aligned_cols=303 Identities=17% Similarity=0.156 Sum_probs=180.1
Q ss_pred CCceEEEccCCCcc-ccCCcc-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCC-CchhhcCCCCCcEE
Q 041360 223 KGPIAISLPHRDIQ-ELPERL-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSS-LPSSLGRLFNLQTL 299 (561)
Q Consensus 223 ~~l~~l~l~~~~~~-~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~-lp~~i~~L~~L~~L 299 (561)
.++++|++++|.+. .+|..+ .+++|++|+++++. ....+|..+ .++++|++|++++|.+.. +|..+..+++|++|
T Consensus 236 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 313 (968)
T PLN00113 236 TSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK-LSGPIPPSI-FSLQKLISLDLSDNSLSGEIPELVIQLQNLEIL 313 (968)
T ss_pred CCCCEEECcCceeccccChhHhCCCCCCEEECcCCe-eeccCchhH-hhccCcCEEECcCCeeccCCChhHcCCCCCcEE
Confidence 45666666666653 344444 55666666666665 233444443 556666666666665543 45555566666666
Q ss_pred EeCCCCCCC--cccccCCCCCcEEEccCCcCc-ccChhhhcccccc----------------------------------
Q 041360 300 CLGGCRLKD--IAIVGQLKKLEILSFRDSYIE-ELPHEIGQLTRLV---------------------------------- 342 (561)
Q Consensus 300 ~l~~~~l~~--p~~i~~L~~L~~L~l~~~~~~-~lp~~i~~L~~L~---------------------------------- 342 (561)
++++|.+.. |..++.+++|++|++++|.+. .+|..++++.+|+
T Consensus 314 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~ 393 (968)
T PLN00113 314 HLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLE 393 (968)
T ss_pred ECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEec
Confidence 666655443 455555555555655555444 3455444444431
Q ss_pred -ccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhcCCCCCcEEEEeeccCcccCcc--cccccccEEEEEeccc
Q 041360 343 -VIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIQVRDAQILPQD--LVLVELQRYKICIGEA 419 (561)
Q Consensus 343 -~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~ 419 (561)
.+|. .++.+++|+.|++++|...... ...+.++++|+.|+++.|.+...... ..+++|+.|++..+..
T Consensus 394 ~~~p~-~~~~~~~L~~L~L~~n~l~~~~--------p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~ 464 (968)
T PLN00113 394 GEIPK-SLGACRSLRRVRLQDNSFSGEL--------PSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKF 464 (968)
T ss_pred ccCCH-HHhCCCCCCEEECcCCEeeeEC--------ChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCcee
Confidence 1222 2445555555555555443222 24566677777777777766533222 2567788887754332
Q ss_pred cccCCCCccccceEEEecCCccchhhhhhhHHHhhccccceeeccccCcccccccccCCCCCCCccEEEEecCCccchhh
Q 041360 420 WRMWGVTSEISRLVRLHGLENVSTLLENYGMKMLLKEAEEIHLNELKGVQNAVHELDDGEGFPRLKHLRVESCSEILHIV 499 (561)
Q Consensus 420 ~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~ll~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 499 (561)
...........++..|++.+|......+..+..+ ++|+.|+++++.-...+|.. .+.+++|++|+|++|.--..+|
T Consensus 465 ~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~Ls~N~l~~~~p 540 (968)
T PLN00113 465 FGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSL-SELMQLKLSENKLSGEIPDE---LSSCKKLVSLDLSHNQLSGQIP 540 (968)
T ss_pred eeecCcccccccceEEECcCCccCCccChhhhhh-hccCEEECcCCcceeeCChH---HcCccCCCEEECCCCcccccCC
Confidence 1111112223456677777655344556677776 89999999987665566655 3578999999999965444455
Q ss_pred cccCcccCCcCccccccccccccc--cccCCCCCCCCCCCCcccCCCcccc
Q 041360 500 GSVGRVRRKVFPLLESLSLKKASF--VILHGQKPTAASKGPEREKPTTSLG 548 (561)
Q Consensus 500 ~~~~~~~~~~~~~L~~L~l~~c~~--~~~~~~~~~~~l~~L~~L~i~~c~~ 548 (561)
. ....+++|+.|++.+|.- .++ ..+..+++|+.|++.+|.-
T Consensus 541 ~-----~~~~l~~L~~L~Ls~N~l~~~~p---~~l~~l~~L~~l~ls~N~l 583 (968)
T PLN00113 541 A-----SFSEMPVLSQLDLSQNQLSGEIP---KNLGNVESLVQVNISHNHL 583 (968)
T ss_pred h-----hHhCcccCCEEECCCCcccccCC---hhHhcCcccCEEeccCCcc
Confidence 2 336788999999998886 332 2366788999999988863
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.78 E-value=4.4e-21 Score=189.91 Aligned_cols=306 Identities=15% Similarity=0.161 Sum_probs=136.6
Q ss_pred CCceEEEccCCCccccCCcc-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEe
Q 041360 223 KGPIAISLPHRDIQELPERL-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCL 301 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l 301 (561)
.++.||++..|++..+-..+ +++.||++++..+......+|..+| +++.|.+||||+|.+++.|..+...+++-+|+|
T Consensus 55 qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNL 133 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNL 133 (1255)
T ss_pred hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhcchhhhhhcCcEEEEc
Confidence 34455555555544333322 4555555555554433344555543 455555555555555555555555555555555
Q ss_pred CCCCCCC-c-ccccCCCCCcEEEccCCcCcccChhhhccccccccCc-------hh---hcCCCCCcEEEccCCcccccc
Q 041360 302 GGCRLKD-I-AIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAP-------NL---ISKFSQLEELYMGDSFSQWDK 369 (561)
Q Consensus 302 ~~~~l~~-p-~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~-------~~---i~~l~~L~~L~l~~~~~~~~~ 369 (561)
++|.|.. | +-+-+|..|-.||+++|++..+|..+..|..|+++.- +. +..+++|++|++++.+..
T Consensus 134 S~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT--- 210 (1255)
T KOG0444|consen 134 SYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT--- 210 (1255)
T ss_pred ccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch---
Confidence 5555444 4 3333455555555555555555555544444432210 00 123444455555443221
Q ss_pred cCCCcccchHhhcCCCCCcEEEEeeccCcccCccc-ccccccEEEEEeccccccCCCCccccceEEEecCCccchhhhhh
Q 041360 370 VEGGSNASLAELKGLSKLTTLEIQVRDAQILPQDL-VLVELQRYKICIGEAWRMWGVTSEISRLVRLHGLENVSTLLENY 448 (561)
Q Consensus 370 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~ 448 (561)
....+.++..+.+|+.+++++|++..+|.-. .+++|++|++++...-.-......-.++..|.++.+. ....|.
T Consensus 211 ----l~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQ-Lt~LP~ 285 (1255)
T KOG0444|consen 211 ----LDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQ-LTVLPD 285 (1255)
T ss_pred ----hhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccch-hccchH
Confidence 1112244555556666666666665555443 5556666655432110000000111122333333332 333344
Q ss_pred hHHHhhccccceeecccc-CcccccccccCCCCCCCccEEEEecCCccchhhcccCcccCCcCccccccccccccc-ccc
Q 041360 449 GMKMLLKEAEEIHLNELK-GVQNAVHELDDGEGFPRLKHLRVESCSEILHIVGSVGRVRRKVFPLLESLSLKKASF-VIL 526 (561)
Q Consensus 449 ~~~~ll~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~c~~-~~~ 526 (561)
.+-.+ ++|+.|.+.+.. ....+|+. ++.+.+|+.+...+ ++|+-+| .+..-++.|++|.+....- .++
T Consensus 286 avcKL-~kL~kLy~n~NkL~FeGiPSG---IGKL~~Levf~aan-N~LElVP-----EglcRC~kL~kL~L~~NrLiTLP 355 (1255)
T KOG0444|consen 286 AVCKL-TKLTKLYANNNKLTFEGIPSG---IGKLIQLEVFHAAN-NKLELVP-----EGLCRCVKLQKLKLDHNRLITLP 355 (1255)
T ss_pred HHhhh-HHHHHHHhccCcccccCCccc---hhhhhhhHHHHhhc-cccccCc-----hhhhhhHHHHHhcccccceeech
Confidence 44444 555555554422 11223332 44555555555554 4455444 2223444555555543322 332
Q ss_pred CCCCCCCCCCCCcccCCCcccccc
Q 041360 527 HGQKPTAASKGPEREKPTTSLGFN 550 (561)
Q Consensus 527 ~~~~~~~~l~~L~~L~i~~c~~l~ 550 (561)
.. +.-++.|+.|+++..++|.
T Consensus 356 ea---IHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 356 EA---IHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hh---hhhcCCcceeeccCCcCcc
Confidence 22 3445555555555555544
No 7
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.78 E-value=2.2e-18 Score=197.33 Aligned_cols=313 Identities=16% Similarity=0.165 Sum_probs=203.0
Q ss_pred cccCCCceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCC-CCCCchhhcCCCCCc
Q 041360 219 ETKQKGPIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVR-FSSLPSSLGRLFNLQ 297 (561)
Q Consensus 219 ~~~~~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-i~~lp~~i~~L~~L~ 297 (561)
..| .++|.+.+.++.+..+|..+...+|+.|++.++. +..++..+ ..+++|++|+++++. +..+|. ++.+++|+
T Consensus 586 ~lp-~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~--l~~L~~~~-~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le 660 (1153)
T PLN03210 586 YLP-PKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSK--LEKLWDGV-HSLTGLRNIDLRGSKNLKEIPD-LSMATNLE 660 (1153)
T ss_pred hcC-cccEEEEecCCCCCCCCCcCCccCCcEEECcCcc--cccccccc-ccCCCCCEEECCCCCCcCcCCc-cccCCccc
Confidence 344 6799999999999999998888999999999987 77787775 789999999999875 666774 88899999
Q ss_pred EEEeCCCC-CCC-cccccCCCCCcEEEccCC-cCcccChhhhccccccccCchh---h----cCCCCCcEEEccCCcccc
Q 041360 298 TLCLGGCR-LKD-IAIVGQLKKLEILSFRDS-YIEELPHEIGQLTRLVVIAPNL---I----SKFSQLEELYMGDSFSQW 367 (561)
Q Consensus 298 ~L~l~~~~-l~~-p~~i~~L~~L~~L~l~~~-~~~~lp~~i~~L~~L~~l~~~~---i----~~l~~L~~L~l~~~~~~~ 367 (561)
+|++++|. +.. |..++++++|+.|++++| .+..+|..+ ++++|+.+.-.. + ...++|++|++.++...
T Consensus 661 ~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~- 738 (1153)
T PLN03210 661 TLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE- 738 (1153)
T ss_pred EEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc-
Confidence 99999987 666 888999999999999998 788888765 555553322110 0 12357788888777532
Q ss_pred cccCCCcccch----------------------HhhcCCCCCcEEEEeecc-CcccCccc-ccccccEEEEEeccccccC
Q 041360 368 DKVEGGSNASL----------------------AELKGLSKLTTLEIQVRD-AQILPQDL-VLVELQRYKICIGEAWRMW 423 (561)
Q Consensus 368 ~~~~~~~~~~~----------------------~~l~~l~~L~~L~l~~~~-~~~~~~~~-~~~~L~~L~l~~~~~~~~~ 423 (561)
..+....-..+ ......++|+.|.++.+. ...+|..+ .+++|+.|++..+..+...
T Consensus 739 ~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L 818 (1153)
T PLN03210 739 EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL 818 (1153)
T ss_pred cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee
Confidence 11110000000 001112456666665442 33445443 5666777776554433322
Q ss_pred CCCccccceEEEecCCccchhhhhhhHHHhhccccceeeccccCcccccccccCCCCCCCccEEEEecCCccchhhcccC
Q 041360 424 GVTSEISRLVRLHGLENVSTLLENYGMKMLLKEAEEIHLNELKGVQNAVHELDDGEGFPRLKHLRVESCSEILHIVGSVG 503 (561)
Q Consensus 424 ~~~~~~~~l~~L~~~~~~~~~~~~~~~~~ll~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~ 503 (561)
+......++..|++.+|. .... +....++|+.|++.+ +.++.+|.. .+.+++|++|++.+|++++.++
T Consensus 819 P~~~~L~sL~~L~Ls~c~-~L~~---~p~~~~nL~~L~Ls~-n~i~~iP~s---i~~l~~L~~L~L~~C~~L~~l~---- 886 (1153)
T PLN03210 819 PTGINLESLESLDLSGCS-RLRT---FPDISTNISDLNLSR-TGIEEVPWW---IEKFSNLSFLDMNGCNNLQRVS---- 886 (1153)
T ss_pred CCCCCccccCEEECCCCC-cccc---ccccccccCEeECCC-CCCccChHH---HhcCCCCCEEECCCCCCcCccC----
Confidence 222233445555555533 1111 111235677777765 355666654 4579999999999999999998
Q ss_pred cccCCcCccccccccccccc--cccCCCCC----------CCCCCCCcccCCCccccccc
Q 041360 504 RVRRKVFPLLESLSLKKASF--VILHGQKP----------TAASKGPEREKPTTSLGFNE 551 (561)
Q Consensus 504 ~~~~~~~~~L~~L~l~~c~~--~~~~~~~~----------~~~l~~L~~L~i~~c~~l~~ 551 (561)
.....+++|+.+.+.+|++ .+.....+ ...++....+.+.+|.+++.
T Consensus 887 -~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~ 945 (1153)
T PLN03210 887 -LNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCINFINCFNLDQ 945 (1153)
T ss_pred -cccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchhccccccccCCCc
Confidence 3457889999999999997 22211111 12344456677888887763
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.74 E-value=9.7e-20 Score=180.51 Aligned_cols=262 Identities=19% Similarity=0.271 Sum_probs=178.9
Q ss_pred CCceEEEccCCCccccCCcc-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEe
Q 041360 223 KGPIAISLPHRDIQELPERL-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCL 301 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l 301 (561)
+.+..++++.|++...|..+ ..+++-+|+++++. +..+|..+|-++..|-+||||+|.++.+|+.+..|.+|++|.|
T Consensus 103 ~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~--IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~L 180 (1255)
T KOG0444|consen 103 KDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNN--IETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKL 180 (1255)
T ss_pred ccceeeecchhhhhhcchhhhhhcCcEEEEcccCc--cccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhc
Confidence 67888899999999899888 67888899999997 8889999888999999999999999999999999999999999
Q ss_pred CCCCCCC--cccccCCCCCcEEEccCCc--CcccChhhhcccccccc-------C--chhhcCCCCCcEEEccCCccccc
Q 041360 302 GGCRLKD--IAIVGQLKKLEILSFRDSY--IEELPHEIGQLTRLVVI-------A--PNLISKFSQLEELYMGDSFSQWD 368 (561)
Q Consensus 302 ~~~~l~~--p~~i~~L~~L~~L~l~~~~--~~~lp~~i~~L~~L~~l-------~--~~~i~~l~~L~~L~l~~~~~~~~ 368 (561)
++|.+.. ...+..+.+|++|.+++++ +..+|.++..|.+|..+ | +..+.++.+|+.|++++|.+..-
T Consensus 181 s~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL 260 (1255)
T KOG0444|consen 181 SNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITEL 260 (1255)
T ss_pred CCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeee
Confidence 9998766 5777788889999998883 55677776666666211 1 23366677777777777654211
Q ss_pred ccCCCcccchHhhcCCCCCcEEEEeeccCcccCccc-ccccccEEEEEeccccccCCCCccccceEEEecCCccchhhhh
Q 041360 369 KVEGGSNASLAELKGLSKLTTLEIQVRDAQILPQDL-VLVELQRYKICIGEAWRMWGVTSEISRLVRLHGLENVSTLLEN 447 (561)
Q Consensus 369 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~ 447 (561)
. .....-.+|++|+++.|.++.+|... .+++|++|..... .+. ....|
T Consensus 261 ~---------~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~N-kL~---------------------FeGiP 309 (1255)
T KOG0444|consen 261 N---------MTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNN-KLT---------------------FEGIP 309 (1255)
T ss_pred e---------ccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccC-ccc---------------------ccCCc
Confidence 1 11223346777777777777666654 5666666554211 110 12235
Q ss_pred hhHHHhhccccceeeccccCcccccccccCCCCCCCccEEEEecCCccchhhcccCcccCCcCccccccccccccc-ccc
Q 041360 448 YGMKMLLKEAEEIHLNELKGVQNAVHELDDGEGFPRLKHLRVESCSEILHIVGSVGRVRRKVFPLLESLSLKKASF-VIL 526 (561)
Q Consensus 448 ~~~~~ll~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~c~~-~~~ 526 (561)
.+++.+ ..|+.+...+ +.+.-+|.. ...++.|+.|.+.+ +.|-.+|+ .+.-+|.|+.|+++..|+ -++
T Consensus 310 SGIGKL-~~Levf~aan-N~LElVPEg---lcRC~kL~kL~L~~-NrLiTLPe-----aIHlL~~l~vLDlreNpnLVMP 378 (1255)
T KOG0444|consen 310 SGIGKL-IQLEVFHAAN-NKLELVPEG---LCRCVKLQKLKLDH-NRLITLPE-----AIHLLPDLKVLDLRENPNLVMP 378 (1255)
T ss_pred cchhhh-hhhHHHHhhc-cccccCchh---hhhhHHHHHhcccc-cceeechh-----hhhhcCCcceeeccCCcCccCC
Confidence 566655 6666666654 445555544 33566777777765 56666663 235567777777777776 444
Q ss_pred CC
Q 041360 527 HG 528 (561)
Q Consensus 527 ~~ 528 (561)
..
T Consensus 379 PK 380 (1255)
T KOG0444|consen 379 PK 380 (1255)
T ss_pred CC
Confidence 33
No 9
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.72 E-value=8.4e-18 Score=165.83 Aligned_cols=300 Identities=17% Similarity=0.175 Sum_probs=162.9
Q ss_pred CCceEEEccCCCccccCCcc-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCch-hhcCCCCCcEEE
Q 041360 223 KGPIAISLPHRDIQELPERL-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPS-SLGRLFNLQTLC 300 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~-~i~~L~~L~~L~ 300 (561)
.+++.+++..|.+..+|... ...+|+.|++.++. +.++...-++.+..||+|||+.|.|.++|. ++..-.++++|+
T Consensus 102 ~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~--I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~ 179 (873)
T KOG4194|consen 102 PNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNL--ISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLN 179 (873)
T ss_pred CcceeeeeccchhhhcccccccccceeEEeeeccc--cccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEe
Confidence 34555555555555555554 33446666665554 444444444555566666666666655543 344445566666
Q ss_pred eCCCCCCC--cccccCCCCCcEEEccCCcCcccChhhh-ccccc----------------------------------cc
Q 041360 301 LGGCRLKD--IAIVGQLKKLEILSFRDSYIEELPHEIG-QLTRL----------------------------------VV 343 (561)
Q Consensus 301 l~~~~l~~--p~~i~~L~~L~~L~l~~~~~~~lp~~i~-~L~~L----------------------------------~~ 343 (561)
|++|+|+. -..+..+.+|-+|.++.|.+..+|..+. +|.+| ..
T Consensus 180 La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~k 259 (873)
T KOG4194|consen 180 LASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISK 259 (873)
T ss_pred eccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccc
Confidence 66666555 3555555566666666666665554322 24444 12
Q ss_pred cCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhcCCCCCcEEEEeeccCcccC--cccccccccEEEEEecc--c
Q 041360 344 IAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIQVRDAQILP--QDLVLVELQRYKICIGE--A 419 (561)
Q Consensus 344 l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~--~ 419 (561)
+..+.+..+.++++|++..|....-.. ..+.+++.|+.|+++.|.++.+. .+...++|+.|+++... .
T Consensus 260 L~DG~Fy~l~kme~l~L~~N~l~~vn~--------g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~ 331 (873)
T KOG4194|consen 260 LDDGAFYGLEKMEHLNLETNRLQAVNE--------GWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITR 331 (873)
T ss_pred ccCcceeeecccceeecccchhhhhhc--------ccccccchhhhhccchhhhheeecchhhhcccceeEecccccccc
Confidence 222334445555555555554332111 34667788888888888876544 33466778888875332 1
Q ss_pred cccCCCCccccceEEEecCCccchhhhhhhHHHhhccccceeeccccCccccccccc-CCCCCCCccEEEEecCCccchh
Q 041360 420 WRMWGVTSEISRLVRLHGLENVSTLLENYGMKMLLKEAEEIHLNELKGVQNAVHELD-DGEGFPRLKHLRVESCSEILHI 498 (561)
Q Consensus 420 ~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~ll~~L~~L~l~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~c~~l~~l 498 (561)
++ -........+..|.+.++.....-...|..+ ++|+.|+|++. .+.....+-. ...++++|+.|.+.+ ++++.+
T Consensus 332 l~-~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~l-ssL~~LdLr~N-~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I 407 (873)
T KOG4194|consen 332 LD-EGSFRVLSQLEELNLSHNSIDHLAEGAFVGL-SSLHKLDLRSN-ELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSI 407 (873)
T ss_pred CC-hhHHHHHHHhhhhcccccchHHHHhhHHHHh-hhhhhhcCcCC-eEEEEEecchhhhccchhhhheeecC-ceeeec
Confidence 11 0011112234445554443233334455555 88888888763 2222211100 024589999999998 788888
Q ss_pred hcccCcccCCcCccccccccccccc-cccCCCCCCCCCCCCcccCC
Q 041360 499 VGSVGRVRRKVFPLLESLSLKKASF-VILHGQKPTAASKGPEREKP 543 (561)
Q Consensus 499 ~~~~~~~~~~~~~~L~~L~l~~c~~-~~~~~~~~~~~l~~L~~L~i 543 (561)
+.. ....++.||+|++.+.+- +|-... +..+ .|++|-+
T Consensus 408 ~kr----Afsgl~~LE~LdL~~NaiaSIq~nA--Fe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 408 PKR----AFSGLEALEHLDLGDNAIASIQPNA--FEPM-ELKELVM 446 (873)
T ss_pred chh----hhccCcccceecCCCCcceeecccc--cccc-hhhhhhh
Confidence 732 235567788888888776 554333 3333 5666555
No 10
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.71 E-value=2.7e-18 Score=169.25 Aligned_cols=305 Identities=17% Similarity=0.206 Sum_probs=196.6
Q ss_pred CCceEEEccCCCccccCCc--cCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCC-chhhcCCCCCcEE
Q 041360 223 KGPIAISLPHRDIQELPER--LQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSL-PSSLGRLFNLQTL 299 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l-p~~i~~L~~L~~L 299 (561)
...+.|++++|++..+... .++++|+.+.+..+. +..+|... ....||+.|+|.+|.|.++ .+++.-++.|+.|
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~--Lt~IP~f~-~~sghl~~L~L~~N~I~sv~se~L~~l~alrsl 154 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNE--LTRIPRFG-HESGHLEKLDLRHNLISSVTSEELSALPALRSL 154 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccch--hhhccccc-ccccceeEEeeeccccccccHHHHHhHhhhhhh
Confidence 6778899999998665443 389999999999997 88898832 4566799999999999987 5688999999999
Q ss_pred EeCCCCCCC-c-ccccCCCCCcEEEccCCcCcccCh-hhhccccc----------cccCchhhcCCCCCcEEEccCCccc
Q 041360 300 CLGGCRLKD-I-AIVGQLKKLEILSFRDSYIEELPH-EIGQLTRL----------VVIAPNLISKFSQLEELYMGDSFSQ 366 (561)
Q Consensus 300 ~l~~~~l~~-p-~~i~~L~~L~~L~l~~~~~~~lp~-~i~~L~~L----------~~l~~~~i~~l~~L~~L~l~~~~~~ 366 (561)
||+.|.+.. | +.+..-.++++|++++|+|..+-. .+..+.+| ..+|...+.+|++|+.|++..|.+.
T Consensus 155 DLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir 234 (873)
T KOG4194|consen 155 DLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR 234 (873)
T ss_pred hhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee
Confidence 999999988 5 788888899999999999987753 34444444 6788888888999999999888653
Q ss_pred ccccCCCcccchHhhcCCCCCcEEEEeeccCcccCccc--ccccccEEEEEeccc---cccCCCCcc-------------
Q 041360 367 WDKVEGGSNASLAELKGLSKLTTLEIQVRDAQILPQDL--VLVELQRYKICIGEA---WRMWGVTSE------------- 428 (561)
Q Consensus 367 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~---~~~~~~~~~------------- 428 (561)
.. ....+.++++|+.|.+..|++..+.... .+.++++|++..... -..|.....
T Consensus 235 iv--------e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~ 306 (873)
T KOG4194|consen 235 IV--------EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQ 306 (873)
T ss_pred ee--------hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhh
Confidence 21 1145666666666666666665554442 455555555532210 011222211
Q ss_pred ---------ccceEEEecCCccchhhhhhhHHHhhccccceeeccccCcccccccccCCCCCCCccEEEEecCCccchhh
Q 041360 429 ---------ISRLVRLHGLENVSTLLENYGMKMLLKEAEEIHLNELKGVQNAVHELDDGEGFPRLKHLRVESCSEILHIV 499 (561)
Q Consensus 429 ---------~~~l~~L~~~~~~~~~~~~~~~~~ll~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 499 (561)
..++..|+++.+......+..+..+ ..|++|+|+. +.+..+.... ..++.+|++|++.+ +.+.-..
T Consensus 307 rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L-~~Le~LnLs~-Nsi~~l~e~a--f~~lssL~~LdLr~-N~ls~~I 381 (873)
T KOG4194|consen 307 RIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVL-SQLEELNLSH-NSIDHLAEGA--FVGLSSLHKLDLRS-NELSWCI 381 (873)
T ss_pred eeecchhhhcccceeEeccccccccCChhHHHHH-HHhhhhcccc-cchHHHHhhH--HHHhhhhhhhcCcC-CeEEEEE
Confidence 1234444444444333344455554 6666666664 3344433211 24566777777766 3333222
Q ss_pred cccCcccCCcCccccccccccccc-cccCCCCCCCCCCCCcccCCCcc
Q 041360 500 GSVGRVRRKVFPLLESLSLKKASF-VILHGQKPTAASKGPEREKPTTS 546 (561)
Q Consensus 500 ~~~~~~~~~~~~~L~~L~l~~c~~-~~~~~~~~~~~l~~L~~L~i~~c 546 (561)
... ......+++|++|.+.+..- .|+... +..|.+|++|++-+.
T Consensus 382 EDa-a~~f~gl~~LrkL~l~gNqlk~I~krA--fsgl~~LE~LdL~~N 426 (873)
T KOG4194|consen 382 EDA-AVAFNGLPSLRKLRLTGNQLKSIPKRA--FSGLEALEHLDLGDN 426 (873)
T ss_pred ecc-hhhhccchhhhheeecCceeeecchhh--hccCcccceecCCCC
Confidence 111 11223477777877777765 554332 566777777777544
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.66 E-value=5.3e-18 Score=160.17 Aligned_cols=179 Identities=24% Similarity=0.311 Sum_probs=134.5
Q ss_pred CCceEEEccCCCccccCCcc-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEe
Q 041360 223 KGPIAISLPHRDIQELPERL-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCL 301 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l 301 (561)
..+.++.++.+++..+|+.+ ....++.++++.+. ..++|+++ +.+..|..|+..+|++.++|++++.+..|..|++
T Consensus 91 ~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~--~~el~~~i-~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~ 167 (565)
T KOG0472|consen 91 EALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNE--LKELPDSI-GRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDL 167 (565)
T ss_pred HHHHHhhcccchHhhccHHHhhhhhhhhhhccccc--eeecCchH-HHHhhhhhhhccccccccCchHHHHHHHHHHhhc
Confidence 45667788888888888877 77888888888887 77888886 7888888888888888889988888888888888
Q ss_pred CCCCCCC-cccccCCCCCcEEEccCCcCcccChhhhccccc--------------------------------cccCchh
Q 041360 302 GGCRLKD-IAIVGQLKKLEILSFRDSYIEELPHEIGQLTRL--------------------------------VVIAPNL 348 (561)
Q Consensus 302 ~~~~l~~-p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L--------------------------------~~l~~~~ 348 (561)
.++.++. |+..-+++.|++||..+|-+..+|++++.|.+| ..+|.+.
T Consensus 168 ~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~ 247 (565)
T KOG0472|consen 168 EGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEH 247 (565)
T ss_pred cccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHH
Confidence 8888887 655555888888888888888888888888877 2333333
Q ss_pred hcCCCCCcEEEccCCcccccccCCCcccchHhhcCCCCCcEEEEeeccCcccCccc-ccccccEEEE
Q 041360 349 ISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIQVRDAQILPQDL-VLVELQRYKI 414 (561)
Q Consensus 349 i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l 414 (561)
..++++|.+||+++|... +.+.++..+++|..|+++.|+++.+|... .+ .|+.|-+
T Consensus 248 ~~~L~~l~vLDLRdNklk---------e~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~l 304 (565)
T KOG0472|consen 248 LKHLNSLLVLDLRDNKLK---------EVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLAL 304 (565)
T ss_pred hcccccceeeeccccccc---------cCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhh
Confidence 446667777777766542 33466777778888888888888777654 22 4555444
No 12
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.62 E-value=3.4e-18 Score=161.47 Aligned_cols=248 Identities=22% Similarity=0.283 Sum_probs=186.7
Q ss_pred CCceEEEccCCCccccCCcc-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEe
Q 041360 223 KGPIAISLPHRDIQELPERL-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCL 301 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l 301 (561)
..+..+.++.|.++.+.+.. .+..+.+|.++++. ..++|+.+ +++..++.|+.++|++..+|+.++.+.+|+.|+.
T Consensus 45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~--l~~lp~ai-g~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~ 121 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNK--LSQLPAAI-GELEALKSLNVSHNKLSELPEQIGSLISLVKLDC 121 (565)
T ss_pred cchhhhhhccCchhhccHhhhcccceeEEEeccch--hhhCCHHH-HHHHHHHHhhcccchHhhccHHHhhhhhhhhhhc
Confidence 55677778888887776655 77888999999987 88899887 8999999999999999999999999999999999
Q ss_pred CCCCCCC-cccccCCCCCcEEEccCCcCcccChhhhccccc----------cccCchhhcCCCCCcEEEccCCccccccc
Q 041360 302 GGCRLKD-IAIVGQLKKLEILSFRDSYIEELPHEIGQLTRL----------VVIAPNLISKFSQLEELYMGDSFSQWDKV 370 (561)
Q Consensus 302 ~~~~l~~-p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L----------~~l~~~~i~~l~~L~~L~l~~~~~~~~~~ 370 (561)
+++.+.. |++++.+..|+.|+..+|++..+|.+++++.+| ..+|++.+. ++.|++|+...|...
T Consensus 122 s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~---- 196 (565)
T KOG0472|consen 122 SSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE---- 196 (565)
T ss_pred cccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh----
Confidence 9999888 899999999999999999999999999888777 566776555 889999987666442
Q ss_pred CCCcccchHhhcCCCCCcEEEEeeccCcccCcccccccccEEEEEeccccccCC--CCccccceEEEecCCccchhhhhh
Q 041360 371 EGGSNASLAELKGLSKLTTLEIQVRDAQILPQDLVLVELQRYKICIGEAWRMWG--VTSEISRLVRLHGLENVSTLLENY 448 (561)
Q Consensus 371 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~l~~L~~~~~~~~~~~~~ 448 (561)
..+.+++.+.+|.-|.+..|.+..+|..-.+..|++|++.... +.... ......++..|++.++. ....|+
T Consensus 197 -----tlP~~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdNk-lke~Pd 269 (565)
T KOG0472|consen 197 -----TLPPELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDNK-LKEVPD 269 (565)
T ss_pred -----cCChhhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeeccccc-cccCch
Confidence 3447888899999999999999988877788888888773221 11000 01123345555555554 555666
Q ss_pred hHHHhhccccceeeccccCcccccccccCCCCCCCccEEEEec
Q 041360 449 GMKMLLKEAEEIHLNELKGVQNAVHELDDGEGFPRLKHLRVES 491 (561)
Q Consensus 449 ~~~~ll~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 491 (561)
++.-+ .+|+.|++++ +.+..+|.. .+++ .|+.|.+.+
T Consensus 270 e~clL-rsL~rLDlSN-N~is~Lp~s---Lgnl-hL~~L~leG 306 (565)
T KOG0472|consen 270 EICLL-RSLERLDLSN-NDISSLPYS---LGNL-HLKFLALEG 306 (565)
T ss_pred HHHHh-hhhhhhcccC-CccccCCcc---cccc-eeeehhhcC
Confidence 66655 6677777775 455555554 4556 666676666
No 13
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=3.4e-17 Score=137.24 Aligned_cols=156 Identities=25% Similarity=0.375 Sum_probs=118.0
Q ss_pred cccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeCCCCCCC-cccccC
Q 041360 236 QELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLGGCRLKD-IAIVGQ 314 (561)
Q Consensus 236 ~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~-p~~i~~ 314 (561)
..+|..+++++++.|.++++. +..+|+.+ ..+++|++|++++|.++++|.+|+.++.|+.|++.-|++.. |..+|.
T Consensus 24 ~~~~gLf~~s~ITrLtLSHNK--l~~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs 100 (264)
T KOG0617|consen 24 EELPGLFNMSNITRLTLSHNK--LTVVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGS 100 (264)
T ss_pred hhcccccchhhhhhhhcccCc--eeecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCC
Confidence 345555567777777777776 66777776 77777888888777777787777888888888777777666 777777
Q ss_pred CCCCcEEEccCCcCc--ccChhhhccccc----------cccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhc
Q 041360 315 LKKLEILSFRDSYIE--ELPHEIGQLTRL----------VVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELK 382 (561)
Q Consensus 315 L~~L~~L~l~~~~~~--~lp~~i~~L~~L----------~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~ 382 (561)
++.|++||+.+|++. .+|..+..|+.| +.+|+. ++++++||.|.+.+|... ....+++
T Consensus 101 ~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~d-vg~lt~lqil~lrdndll---------~lpkeig 170 (264)
T KOG0617|consen 101 FPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPD-VGKLTNLQILSLRDNDLL---------SLPKEIG 170 (264)
T ss_pred CchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChh-hhhhcceeEEeeccCchh---------hCcHHHH
Confidence 788888887777544 467666666655 455665 899999999999888654 3447899
Q ss_pred CCCCCcEEEEeeccCcccCccc
Q 041360 383 GLSKLTTLEIQVRDAQILPQDL 404 (561)
Q Consensus 383 ~l~~L~~L~l~~~~~~~~~~~~ 404 (561)
.+++|+.|++++|.++.+|+.+
T Consensus 171 ~lt~lrelhiqgnrl~vlppel 192 (264)
T KOG0617|consen 171 DLTRLRELHIQGNRLTVLPPEL 192 (264)
T ss_pred HHHHHHHHhcccceeeecChhh
Confidence 9999999999999998877643
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.50 E-value=3.4e-15 Score=155.22 Aligned_cols=255 Identities=15% Similarity=0.199 Sum_probs=189.4
Q ss_pred CCceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeC
Q 041360 223 KGPIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLG 302 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~ 302 (561)
.+++++..+.|.+..+-....-.+|++++++++. +..+| ++.+.+.+|..|+..+|.+..+|..+....+|++|.+.
T Consensus 219 ~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~--l~~lp-~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~ 295 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVHPVPLNLQYLDISHNN--LSNLP-EWIGACANLEALNANHNRLVALPLRISRITSLVSLSAA 295 (1081)
T ss_pred cchheeeeccCcceeeccccccccceeeecchhh--hhcch-HHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhh
Confidence 6788888888888755555567889999999997 88899 66699999999999999999999999999999999999
Q ss_pred CCCCCC-cccccCCCCCcEEEccCCcCcccChhhhccccc------------cccCchhhcCCCCCcEEEccCCcccccc
Q 041360 303 GCRLKD-IAIVGQLKKLEILSFRDSYIEELPHEIGQLTRL------------VVIAPNLISKFSQLEELYMGDSFSQWDK 369 (561)
Q Consensus 303 ~~~l~~-p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L------------~~l~~~~i~~l~~L~~L~l~~~~~~~~~ 369 (561)
.|.++. |+..+.+++|++|++..|++..+|..+-..... ...|...=..++.|+.|.+.+|..
T Consensus 296 ~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L---- 371 (1081)
T KOG0618|consen 296 YNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL---- 371 (1081)
T ss_pred hhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc----
Confidence 999999 888899999999999999999999743322111 233322223456777888877765
Q ss_pred cCCCcccchHhhcCCCCCcEEEEeeccCcccCccc--ccccccEEEEEeccccccCCCCccccceEEEecCCccchhhhh
Q 041360 370 VEGGSNASLAELKGLSKLTTLEIQVRDAQILPQDL--VLVELQRYKICIGEAWRMWGVTSEISRLVRLHGLENVSTLLEN 447 (561)
Q Consensus 370 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~ 447 (561)
.+++...+-+.++|+.|++++|.+..+|... .++.|++|++++.. ....+
T Consensus 372 ----td~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk------------------------L~~Lp 423 (1081)
T KOG0618|consen 372 ----TDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK------------------------LTTLP 423 (1081)
T ss_pred ----cccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch------------------------hhhhh
Confidence 3567788999999999999999999888763 67777777774321 22334
Q ss_pred hhHHHhhccccceeeccccCcccccccccCCCCCCCccEEEEecCCccchhhcccCcccCCcCccccccccccccc
Q 041360 448 YGMKMLLKEAEEIHLNELKGVQNAVHELDDGEGFPRLKHLRVESCSEILHIVGSVGRVRRKVFPLLESLSLKKASF 523 (561)
Q Consensus 448 ~~~~~ll~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 523 (561)
..+..+ +.|++|...+ +.+..+|. ...+++|+.++++. ++|+.+.-. ....-|+|++|++.+.++
T Consensus 424 ~tva~~-~~L~tL~ahs-N~l~~fPe----~~~l~qL~~lDlS~-N~L~~~~l~----~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 424 DTVANL-GRLHTLRAHS-NQLLSFPE----LAQLPQLKVLDLSC-NNLSEVTLP----EALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred HHHHhh-hhhHHHhhcC-Cceeechh----hhhcCcceEEeccc-chhhhhhhh----hhCCCcccceeeccCCcc
Confidence 555555 7777777665 45555653 34677777777774 677665411 111226778887777775
No 15
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.50 E-value=4.5e-16 Score=130.56 Aligned_cols=140 Identities=21% Similarity=0.327 Sum_probs=126.4
Q ss_pred CCceEEEccCCCccccCCcc-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEe
Q 041360 223 KGPIAISLPHRDIQELPERL-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCL 301 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l 301 (561)
+.+.++.++.|++..+|+.+ ++.+|++|.++.+. +..+|.++ +.++.||.|++.-|.+..+|..++.++-|+.|||
T Consensus 33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq--ie~lp~~i-ssl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ--IEELPTSI-SSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhcccCceeecCCcHHHhhhhhhhhcccch--hhhcChhh-hhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 67889999999999999888 89999999999998 88999987 8999999999999999999999999999999999
Q ss_pred CCCCCCC---cccccCCCCCcEEEccCCcCcccChhhhcccccc----------ccCchhhcCCCCCcEEEccCCccc
Q 041360 302 GGCRLKD---IAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLV----------VIAPNLISKFSQLEELYMGDSFSQ 366 (561)
Q Consensus 302 ~~~~l~~---p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~----------~l~~~~i~~l~~L~~L~l~~~~~~ 366 (561)
.+|.+.+ |..+-.+..|+.|++++|.++-+|.++|+|++|+ ++|.+ ++.+++|++|++++|...
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpke-ig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKE-IGDLTRLRELHIQGNRLT 186 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHH-HHHHHHHHHHhcccceee
Confidence 9999776 7888889999999999999999999999999983 45665 899999999999999764
No 16
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.44 E-value=3.8e-15 Score=154.89 Aligned_cols=98 Identities=22% Similarity=0.251 Sum_probs=79.6
Q ss_pred CceEEEccCCCccccCCcc-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeC
Q 041360 224 GPIAISLPHRDIQELPERL-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLG 302 (561)
Q Consensus 224 ~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~ 302 (561)
++.+|++++|.+..+|..+ .+++|+.|.++.+. +..+|.+. +++++|++|.|.+|.+..+|.++..+.+|+||+++
T Consensus 46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~--i~~vp~s~-~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNY--IRSVPSSC-SNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeeccccccccCCchhhhHHHHhhcccchhh--HhhCchhh-hhhhcchhheeccchhhcCchhHHhhhcccccccc
Confidence 4889999999999999887 78999999999986 78888776 89999999999999999999999999999999999
Q ss_pred CCCCCC-cccccCCCCCcEEEcc
Q 041360 303 GCRLKD-IAIVGQLKKLEILSFR 324 (561)
Q Consensus 303 ~~~l~~-p~~i~~L~~L~~L~l~ 324 (561)
+|.+.. |..+..+..+..++.+
T Consensus 123 ~N~f~~~Pl~i~~lt~~~~~~~s 145 (1081)
T KOG0618|consen 123 FNHFGPIPLVIEVLTAEEELAAS 145 (1081)
T ss_pred hhccCCCchhHHhhhHHHHHhhh
Confidence 998665 5544444433333333
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.41 E-value=2.4e-12 Score=137.93 Aligned_cols=246 Identities=17% Similarity=0.103 Sum_probs=114.3
Q ss_pred ceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeCCC
Q 041360 225 PIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLGGC 304 (561)
Q Consensus 225 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~ 304 (561)
-..++++.+.+..+|..+. ++|+.|.+..|. +..+|. .+++|++|++++|.++.+|.. ..+|++|++++|
T Consensus 203 ~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~--Lt~LP~----lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N 272 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCLP-AHITTLVIPDNN--LTSLPA----LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSN 272 (788)
T ss_pred CcEEEcCCCCCCcCCcchh-cCCCEEEccCCc--CCCCCC----CCCCCcEEEecCCccCcccCc---ccccceeeccCC
Confidence 3445555555555554332 345555555554 444443 234555555555555555432 234555555555
Q ss_pred CCCC-cccccCCCCCcEEEccCCcCcccChhhhccccc-------cccCchhhcCCCCCcEEEccCCcccccccCCCccc
Q 041360 305 RLKD-IAIVGQLKKLEILSFRDSYIEELPHEIGQLTRL-------VVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNA 376 (561)
Q Consensus 305 ~l~~-p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L-------~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 376 (561)
.+.. |.. ..+|+.|++++|++..+|....+|+.| ..+|. -..+|+.|++++|.+.. ++
T Consensus 273 ~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~p~~L~~LdLS~N~L~~Lp~----lp~~L~~L~Ls~N~L~~-LP------ 338 (788)
T PRK15387 273 PLTHLPAL---PSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPA----LPSELCKLWAYNNQLTS-LP------ 338 (788)
T ss_pred chhhhhhc---hhhcCEEECcCCccccccccccccceeECCCCccccCCC----CcccccccccccCcccc-cc------
Confidence 5444 321 133445555555544444322222111 01111 01234455555554321 11
Q ss_pred chHhhcCCCCCcEEEEeeccCcccCcccccccccEEEEEeccccccCCCCccccceEEEecCCccchhhhhhhHHHhhcc
Q 041360 377 SLAELKGLSKLTTLEIQVRDAQILPQDLVLVELQRYKICIGEAWRMWGVTSEISRLVRLHGLENVSTLLENYGMKMLLKE 456 (561)
Q Consensus 377 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~ll~~ 456 (561)
.+ ..+|+.|+++.|.+..+|.. +++|+.|++... .+....... ..+..|++.+|. ....+. ..++
T Consensus 339 ---~l--p~~Lq~LdLS~N~Ls~LP~l--p~~L~~L~Ls~N-~L~~LP~l~--~~L~~LdLs~N~-Lt~LP~----l~s~ 403 (788)
T PRK15387 339 ---TL--PSGLQELSVSDNQLASLPTL--PSELYKLWAYNN-RLTSLPALP--SGLKELIVSGNR-LTSLPV----LPSE 403 (788)
T ss_pred ---cc--ccccceEecCCCccCCCCCC--Ccccceehhhcc-ccccCcccc--cccceEEecCCc-ccCCCC----cccC
Confidence 01 13677777777777766652 356666655322 111111111 233444444432 111121 1256
Q ss_pred ccceeeccccCcccccccccCCCCCCCccEEEEecCCccchhhcccCcccCCcCcccccccccccc
Q 041360 457 AEEIHLNELKGVQNAVHELDDGEGFPRLKHLRVESCSEILHIVGSVGRVRRKVFPLLESLSLKKAS 522 (561)
Q Consensus 457 L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~c~ 522 (561)
|+.|+++++ .+..+|. .+.+|+.|++.+ ++++.+|. ....+++|+.|++.+++
T Consensus 404 L~~LdLS~N-~LssIP~------l~~~L~~L~Ls~-NqLt~LP~-----sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 404 LKELMVSGN-RLTSLPM------LPSGLLSLSVYR-NQLTRLPE-----SLIHLSSETTVNLEGNP 456 (788)
T ss_pred CCEEEccCC-cCCCCCc------chhhhhhhhhcc-CcccccCh-----HHhhccCCCeEECCCCC
Confidence 667777663 3444443 134566677766 45666663 22456677777777666
No 18
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.39 E-value=3.5e-12 Score=136.73 Aligned_cols=229 Identities=17% Similarity=0.106 Sum_probs=164.7
Q ss_pred CCceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeC
Q 041360 223 KGPIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLG 302 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~ 302 (561)
.+++.|.+.+|++..+|.. .++|++|++++|. +..+|. ...+|+.|++++|.+..+|... .+|+.|+++
T Consensus 222 ~~L~~L~L~~N~Lt~LP~l--p~~Lk~LdLs~N~--LtsLP~----lp~sL~~L~Ls~N~L~~Lp~lp---~~L~~L~Ls 290 (788)
T PRK15387 222 AHITTLVIPDNNLTSLPAL--PPELRTLEVSGNQ--LTSLPV----LPPGLLELSIFSNPLTHLPALP---SGLCKLWIF 290 (788)
T ss_pred cCCCEEEccCCcCCCCCCC--CCCCcEEEecCCc--cCcccC----cccccceeeccCCchhhhhhch---hhcCEEECc
Confidence 6789999999999998863 6899999999997 777875 2468999999999998888633 578899999
Q ss_pred CCCCCC-cccccCCCCCcEEEccCCcCcccChhhhccccc-------cccCchhhcCCCCCcEEEccCCcccccccCCCc
Q 041360 303 GCRLKD-IAIVGQLKKLEILSFRDSYIEELPHEIGQLTRL-------VVIAPNLISKFSQLEELYMGDSFSQWDKVEGGS 374 (561)
Q Consensus 303 ~~~l~~-p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L-------~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 374 (561)
+|+++. |.. +++|+.|++++|.+..+|....+|..| ..+|. -..+|+.|++++|.+.. ++
T Consensus 291 ~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP~----lp~~Lq~LdLS~N~Ls~-LP---- 358 (788)
T PRK15387 291 GNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPT----LPSGLQELSVSDNQLAS-LP---- 358 (788)
T ss_pred CCcccccccc---ccccceeECCCCccccCCCCcccccccccccCccccccc----cccccceEecCCCccCC-CC----
Confidence 999888 642 468999999999999888755556555 22332 12479999999987642 22
Q ss_pred ccchHhhcCCCCCcEEEEeeccCcccCcccccccccEEEEEeccccccCCCCccccceEEEecCCccchhhhhhhHHHhh
Q 041360 375 NASLAELKGLSKLTTLEIQVRDAQILPQDLVLVELQRYKICIGEAWRMWGVTSEISRLVRLHGLENVSTLLENYGMKMLL 454 (561)
Q Consensus 375 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~ll 454 (561)
.+ ..+|+.|.++.|.+..+|.. +.+|+.|++..+ .+...... ..++..|++.++. ....|. ++
T Consensus 359 -----~l--p~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N-~Lt~LP~l--~s~L~~LdLS~N~-LssIP~----l~ 421 (788)
T PRK15387 359 -----TL--PSELYKLWAYNNRLTSLPAL--PSGLKELIVSGN-RLTSLPVL--PSELKELMVSGNR-LTSLPM----LP 421 (788)
T ss_pred -----CC--CcccceehhhccccccCccc--ccccceEEecCC-cccCCCCc--ccCCCEEEccCCc-CCCCCc----ch
Confidence 11 24788889999988888763 467999988543 23222221 2345667776654 323332 23
Q ss_pred ccccceeeccccCcccccccccCCCCCCCccEEEEecCCccc
Q 041360 455 KEAEEIHLNELKGVQNAVHELDDGEGFPRLKHLRVESCSEIL 496 (561)
Q Consensus 455 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~ 496 (561)
.+|+.|++++ +.++.+|.. ...+++|+.|+++++ .+.
T Consensus 422 ~~L~~L~Ls~-NqLt~LP~s---l~~L~~L~~LdLs~N-~Ls 458 (788)
T PRK15387 422 SGLLSLSVYR-NQLTRLPES---LIHLSSETTVNLEGN-PLS 458 (788)
T ss_pred hhhhhhhhcc-CcccccChH---HhhccCCCeEECCCC-CCC
Confidence 6788899987 557778765 347899999999985 444
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.34 E-value=2.5e-12 Score=138.60 Aligned_cols=100 Identities=23% Similarity=0.288 Sum_probs=45.3
Q ss_pred CCceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeC
Q 041360 223 KGPIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLG 302 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~ 302 (561)
+.++.|++++|++..+|..+ .++|++|++++|. +..+|..+. .+|+.|++++|.+..+|..+. .+|++|+++
T Consensus 199 ~~L~~L~Ls~N~LtsLP~~l-~~nL~~L~Ls~N~--LtsLP~~l~---~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls 270 (754)
T PRK15370 199 EQITTLILDNNELKSLPENL-QGNIKTLYANSNQ--LTSIPATLP---DTIQEMELSINRITELPERLP--SALQSLDLF 270 (754)
T ss_pred cCCcEEEecCCCCCcCChhh-ccCCCEEECCCCc--cccCChhhh---ccccEEECcCCccCcCChhHh--CCCCEEECc
Confidence 34445555555554444432 2345555555443 334444331 244555555555544444433 245555555
Q ss_pred CCCCCC-cccccCCCCCcEEEccCCcCcccC
Q 041360 303 GCRLKD-IAIVGQLKKLEILSFRDSYIEELP 332 (561)
Q Consensus 303 ~~~l~~-p~~i~~L~~L~~L~l~~~~~~~lp 332 (561)
+|++.. |..+. .+|++|++++|++..+|
T Consensus 271 ~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP 299 (754)
T PRK15370 271 HNKISCLPENLP--EELRYLSVYDNSIRTLP 299 (754)
T ss_pred CCccCccccccC--CCCcEEECCCCccccCc
Confidence 444444 33332 24555555555444443
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.28 E-value=2e-11 Score=133.68 Aligned_cols=268 Identities=18% Similarity=0.161 Sum_probs=158.4
Q ss_pred ccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCC--CCCCchh-hcCCCCCcEEEeCCCC-CCC-c
Q 041360 235 IQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVR--FSSLPSS-LGRLFNLQTLCLGGCR-LKD-I 309 (561)
Q Consensus 235 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~--i~~lp~~-i~~L~~L~~L~l~~~~-l~~-p 309 (561)
....|...+....|...+.++. +..++... ..+.|+.|-+.++. +..++.. +..++.|++|||++|. +.. |
T Consensus 513 ~~~~~~~~~~~~~rr~s~~~~~--~~~~~~~~--~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP 588 (889)
T KOG4658|consen 513 LSEIPQVKSWNSVRRMSLMNNK--IEHIAGSS--ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP 588 (889)
T ss_pred ccccccccchhheeEEEEeccc--hhhccCCC--CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC
Confidence 3345555567788888888876 55565543 56689999999986 6666654 7789999999999987 777 9
Q ss_pred ccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhcCCCCCcE
Q 041360 310 AIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTT 389 (561)
Q Consensus 310 ~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 389 (561)
..|+.|.+||+|+++++.+..+|.++++|+ .|.+|++.........+ ..+..+++||+
T Consensus 589 ~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk--------------~L~~Lnl~~~~~l~~~~--------~i~~~L~~Lr~ 646 (889)
T KOG4658|consen 589 SSIGELVHLRYLDLSDTGISHLPSGLGNLK--------------KLIYLNLEVTGRLESIP--------GILLELQSLRV 646 (889)
T ss_pred hHHhhhhhhhcccccCCCccccchHHHHHH--------------hhheecccccccccccc--------chhhhcccccE
Confidence 999999999999999999999998765554 45556554433221111 23445889999
Q ss_pred EEEeeccCcc----cCcccccccccEEEEEeccccccCCCCccccceEEEecCCccchhhhhhhHHHhhccccceeeccc
Q 041360 390 LEIQVRDAQI----LPQDLVLVELQRYKICIGEAWRMWGVTSEISRLVRLHGLENVSTLLENYGMKMLLKEAEEIHLNEL 465 (561)
Q Consensus 390 L~l~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~ll~~L~~L~l~~~ 465 (561)
|.+....... +.....+++|+.+.+...+. . .......+..+......+.+.++
T Consensus 647 L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~---------------------~~e~l~~~~~L~~~~~~l~~~~~ 704 (889)
T KOG4658|consen 647 LRLPRSALSNDKLLLKELENLEHLENLSITISSV-L---------------------LLEDLLGMTRLRSLLQSLSIEGC 704 (889)
T ss_pred EEeeccccccchhhHHhhhcccchhhheeecchh-H---------------------hHhhhhhhHHHHHHhHhhhhccc
Confidence 9998665211 11111334444443321111 0 00111111122122233333332
Q ss_pred cCcccccccccCCCCCCCccEEEEecCCccchhhcccCcccCCc-CccccccccccccccccCCCCCCCCCCCCcccCCC
Q 041360 466 KGVQNAVHELDDGEGFPRLKHLRVESCSEILHIVGSVGRVRRKV-FPLLESLSLKKASFVILHGQKPTAASKGPEREKPT 544 (561)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~-~~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~i~ 544 (561)
........ ...+.+|+.|.|.+|...+............. |++|.++.+.+|.. ...+.+....++|+.|.+.
T Consensus 705 ~~~~~~~~----~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~--~r~l~~~~f~~~L~~l~l~ 778 (889)
T KOG4658|consen 705 SKRTLISS----LGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHM--LRDLTWLLFAPHLTSLSLV 778 (889)
T ss_pred ccceeecc----cccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhcccc--ccccchhhccCcccEEEEe
Confidence 22222222 45677888888888766543332221112222 67777777777764 1112222345677778887
Q ss_pred cccccccccccC
Q 041360 545 TSLGFNEIIAAD 556 (561)
Q Consensus 545 ~c~~l~~~~~~~ 556 (561)
.|+.+.+.++.+
T Consensus 779 ~~~~~e~~i~~~ 790 (889)
T KOG4658|consen 779 SCRLLEDIIPKL 790 (889)
T ss_pred cccccccCCCHH
Confidence 777777776654
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.26 E-value=2.4e-11 Score=131.09 Aligned_cols=248 Identities=15% Similarity=0.159 Sum_probs=155.3
Q ss_pred CCceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeC
Q 041360 223 KGPIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLG 302 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~ 302 (561)
.+...+.+.++.+..+|..+ .++|+.|++++|. +..+|..++ .+|++|++++|.++.+|..+. .+|+.|+++
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~--LtsLP~~l~---~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls 249 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI-PEQITTLILDNNE--LKSLPENLQ---GNIKTLYANSNQLTSIPATLP--DTIQEMELS 249 (754)
T ss_pred cCceEEEeCCCCcCcCCccc-ccCCcEEEecCCC--CCcCChhhc---cCCCEEECCCCccccCChhhh--ccccEEECc
Confidence 55678899988888888755 3679999999997 778998764 589999999999999998765 479999999
Q ss_pred CCCCCC-cccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhh
Q 041360 303 GCRLKD-IAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAEL 381 (561)
Q Consensus 303 ~~~l~~-p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 381 (561)
+|.+.. |..+. .+|+.|++++|++..+|..+. ++|+.|++++|.+.. .+ ..+
T Consensus 250 ~N~L~~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~----------------~sL~~L~Ls~N~Lt~-LP--------~~l 302 (754)
T PRK15370 250 INRITELPERLP--SALQSLDLFHNKISCLPENLP----------------EELRYLSVYDNSIRT-LP--------AHL 302 (754)
T ss_pred CCccCcCChhHh--CCCCEEECcCCccCccccccC----------------CCCcEEECCCCcccc-Cc--------ccc
Confidence 999888 77664 589999999999888875321 356777777765431 11 111
Q ss_pred cCCCCCcEEEEeeccCcccCcccccccccEEEEEeccccccCCCCccccceEEEecCCccchhhhhhhHHHhhcccccee
Q 041360 382 KGLSKLTTLEIQVRDAQILPQDLVLVELQRYKICIGEAWRMWGVTSEISRLVRLHGLENVSTLLENYGMKMLLKEAEEIH 461 (561)
Q Consensus 382 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~ll~~L~~L~ 461 (561)
. ++|+.|+++.|.++.+|... +++|+.|.+..+. +....... ..++..|++.+|. ....+..+ .++|+.|+
T Consensus 303 p--~sL~~L~Ls~N~Lt~LP~~l-~~sL~~L~Ls~N~-Lt~LP~~l-~~sL~~L~Ls~N~-L~~LP~~l---p~~L~~Ld 373 (754)
T PRK15370 303 P--SGITHLNVQSNSLTALPETL-PPGLKTLEAGENA-LTSLPASL-PPELQVLDVSKNQ-ITVLPETL---PPTITTLD 373 (754)
T ss_pred h--hhHHHHHhcCCccccCCccc-cccceeccccCCc-cccCChhh-cCcccEEECCCCC-CCcCChhh---cCCcCEEE
Confidence 1 35666666666666555432 2566666653321 11111111 1344555555433 22233322 35677777
Q ss_pred eccccCcccccccccCCCCCCCccEEEEecCCccchhhcccCcccCCcCcccccccccccc
Q 041360 462 LNELKGVQNAVHELDDGEGFPRLKHLRVESCSEILHIVGSVGRVRRKVFPLLESLSLKKAS 522 (561)
Q Consensus 462 l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~c~ 522 (561)
++++ .+..+|..+ ..+|+.|++++ ++++.+|..... -...+|++..|.+.+.|
T Consensus 374 Ls~N-~Lt~LP~~l-----~~sL~~LdLs~-N~L~~LP~sl~~-~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 374 VSRN-ALTNLPENL-----PAALQIMQASR-NNLVRLPESLPH-FRGEGPQPTRIIVEYNP 426 (754)
T ss_pred CCCC-cCCCCCHhH-----HHHHHHHhhcc-CCcccCchhHHH-HhhcCCCccEEEeeCCC
Confidence 7764 344554432 23577777776 456666532100 11223556666666555
No 22
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.07 E-value=9.8e-12 Score=118.10 Aligned_cols=109 Identities=24% Similarity=0.329 Sum_probs=68.5
Q ss_pred CCceEEEccCCCccccCCcc--CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecC-CCCCCCch-hhcCCCCCcE
Q 041360 223 KGPIAISLPHRDIQELPERL--QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTG-VRFSSLPS-SLGRLFNLQT 298 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~-~~i~~lp~-~i~~L~~L~~ 298 (561)
.....+.+..|+|..+|+.. .+++||.|++++|. +..+.+..|.++..|-.|-+-+ |.|+.+|+ .++.|..|+-
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~--Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqr 144 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNN--ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQR 144 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccc--hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHH
Confidence 66677777777777777665 67777777777776 6666555667776666664444 66777764 4556666666
Q ss_pred EEeCCCCCCC--cccccCCCCCcEEEccCCcCcccCh
Q 041360 299 LCLGGCRLKD--IAIVGQLKKLEILSFRDSYIEELPH 333 (561)
Q Consensus 299 L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~~~~lp~ 333 (561)
|.+..|++.- ...+..|++|..|.+..|.+..++.
T Consensus 145 LllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~ 181 (498)
T KOG4237|consen 145 LLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICK 181 (498)
T ss_pred HhcChhhhcchhHHHHHHhhhcchhcccchhhhhhcc
Confidence 6666665444 3555555666555555555444443
No 23
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.06 E-value=7e-12 Score=119.07 Aligned_cols=128 Identities=20% Similarity=0.278 Sum_probs=99.2
Q ss_pred CccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCC-chhhcCCCCCcEEEeCC-CCCCC-c-
Q 041360 234 DIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSL-PSSLGRLFNLQTLCLGG-CRLKD-I- 309 (561)
Q Consensus 234 ~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~-~~l~~-p- 309 (561)
.+..+|..+ -+....+++..|. +..+|+..|+.+++||.|||++|.|+.+ |..+..|.+|-.|-+.+ |+|+. |
T Consensus 57 GL~eVP~~L-P~~tveirLdqN~--I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k 133 (498)
T KOG4237|consen 57 GLTEVPANL-PPETVEIRLDQNQ--ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPK 133 (498)
T ss_pred CcccCcccC-CCcceEEEeccCC--cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhh
Confidence 344455433 1345678898897 9999999999999999999999999997 88999999988888877 77999 6
Q ss_pred ccccCCCCCcEEEccCCcCcccCh-hhhccccc----------cccCchhhcCCCCCcEEEccCCc
Q 041360 310 AIVGQLKKLEILSFRDSYIEELPH-EIGQLTRL----------VVIAPNLISKFSQLEELYMGDSF 364 (561)
Q Consensus 310 ~~i~~L~~L~~L~l~~~~~~~lp~-~i~~L~~L----------~~l~~~~i~~l~~L~~L~l~~~~ 364 (561)
..+++|..|+.|.+.-|.+..++. .+..|++| ++++...+..+..++.+++.-|.
T Consensus 134 ~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 134 GAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCc
Confidence 789999999999998888877754 34455544 55555556667777777765544
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.01 E-value=3.9e-11 Score=119.16 Aligned_cols=168 Identities=22% Similarity=0.322 Sum_probs=142.8
Q ss_pred CceEEEccCCCccccCCcc-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeC
Q 041360 224 GPIAISLPHRDIQELPERL-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLG 302 (561)
Q Consensus 224 ~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~ 302 (561)
.....+++.|+...+|... .|-.|..+.+..+. +..+|..+ ..+..|.+|+|+.|.+..+|..++.|+ |+.|.++
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~--~r~ip~~i-~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNC--IRTIPEAI-CNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhcc--ceecchhh-hhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEe
Confidence 3456677788888888877 67888899998887 88888887 899999999999999999999998887 9999999
Q ss_pred CCCCCC-cccccCCCCCcEEEccCCcCcccChhhhccccc----------cccCchhhcCCCCCcEEEccCCcccccccC
Q 041360 303 GCRLKD-IAIVGQLKKLEILSFRDSYIEELPHEIGQLTRL----------VVIAPNLISKFSQLEELYMGDSFSQWDKVE 371 (561)
Q Consensus 303 ~~~l~~-p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L----------~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~ 371 (561)
+|+++. |..++.+.+|..||.+.|.+..+|..++.|.+| ..+|.+ +..|+ |..||+++|...
T Consensus 152 NNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~E-l~~Lp-Li~lDfScNkis----- 224 (722)
T KOG0532|consen 152 NNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEE-LCSLP-LIRLDFSCNKIS----- 224 (722)
T ss_pred cCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHH-HhCCc-eeeeecccCcee-----
Confidence 999998 999999999999999999999999999999988 455665 55554 889999998765
Q ss_pred CCcccchHhhcCCCCCcEEEEeeccCcccCccccc
Q 041360 372 GGSNASLAELKGLSKLTTLEIQVRDAQILPQDLVL 406 (561)
Q Consensus 372 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~ 406 (561)
.....+.+|++|++|-|.+|.+...|..+..
T Consensus 225 ----~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~ 255 (722)
T KOG0532|consen 225 ----YLPVDFRKMRHLQVLQLENNPLQSPPAQICE 255 (722)
T ss_pred ----ecchhhhhhhhheeeeeccCCCCCChHHHHh
Confidence 3346789999999999999999887776533
No 25
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.98 E-value=4.3e-10 Score=99.06 Aligned_cols=58 Identities=26% Similarity=0.336 Sum_probs=12.9
Q ss_pred CCCccEEEecCCCCCCCchhhcCCCCCcEEEeCCCCCCC-cccc-cCCCCCcEEEccCCcC
Q 041360 270 TEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLGGCRLKD-IAIV-GQLKKLEILSFRDSYI 328 (561)
Q Consensus 270 l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~-p~~i-~~L~~L~~L~l~~~~~ 328 (561)
+.+|++|++++|.|+++. .+..+.+|++|++++|+++. .+.+ ..+++|++|++++|++
T Consensus 41 l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I 100 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKI 100 (175)
T ss_dssp -TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS--
T ss_pred hcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcC
Confidence 344444444444444432 23334444444444444443 2222 1244444444444433
No 26
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.96 E-value=6.1e-10 Score=110.81 Aligned_cols=62 Identities=24% Similarity=0.204 Sum_probs=32.1
Q ss_pred cCCCCccEEEecCCCCCC-CchhhcCCCC---CcEEEeCCCCCCC------cccccCC-CCCcEEEccCCcCc
Q 041360 268 EGTEEVKVLSLTGVRFSS-LPSSLGRLFN---LQTLCLGGCRLKD------IAIVGQL-KKLEILSFRDSYIE 329 (561)
Q Consensus 268 ~~l~~Lr~L~l~~~~i~~-lp~~i~~L~~---L~~L~l~~~~l~~------p~~i~~L-~~L~~L~l~~~~~~ 329 (561)
..+.+|+.|++++|.+.. .+..+..+.+ |++|++++|.+.. ...+..+ ++|+.|++++|.+.
T Consensus 78 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 150 (319)
T cd00116 78 TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE 150 (319)
T ss_pred HhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence 455566666666665543 2333333333 6666666665542 1234444 55666666666544
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.92 E-value=9.4e-10 Score=96.91 Aligned_cols=125 Identities=24% Similarity=0.272 Sum_probs=56.1
Q ss_pred CCceEEEccCCCccccCCcc-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhc-CCCCCcEEE
Q 041360 223 KGPIAISLPHRDIQELPERL-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLG-RLFNLQTLC 300 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~-~L~~L~~L~ 300 (561)
.+.+.|+++++.+..+..-- .+.+|+.|++++|. +..+.. +..+++|+.|++++|.|+++++.+. .+++|+.|+
T Consensus 19 ~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~--I~~l~~--l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQ--ITKLEG--LPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS----S--TT------TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred cccccccccccccccccchhhhhcCCCEEECCCCC--CccccC--ccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 56799999999998876433 57899999999998 777765 5889999999999999999977664 699999999
Q ss_pred eCCCCCCC---cccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEcc
Q 041360 301 LGGCRLKD---IAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMG 361 (561)
Q Consensus 301 l~~~~l~~---p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~ 361 (561)
+++|++.. ...+..+++|++|++.+|.+...+.- -...+..+++|+.||..
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~Y----------R~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNY----------RLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTH----------HHHHHHH-TT-SEETTE
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhH----------HHHHHHHcChhheeCCE
Confidence 99999876 57788899999999999987654321 12347788888888854
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.80 E-value=3.4e-10 Score=112.57 Aligned_cols=174 Identities=21% Similarity=0.268 Sum_probs=142.4
Q ss_pred EEEccCCCccccCCcc---CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeCC
Q 041360 227 AISLPHRDIQELPERL---QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLGG 303 (561)
Q Consensus 227 ~l~l~~~~~~~l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~~ 303 (561)
++.+++.+++.+|..- ++......+++.+. +..+|..+ ..+-.|..|.|..|.+..+|..+++|..|.||+|+.
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR--~~elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~ 130 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNR--FSELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSS 130 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccc--cccCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhcc
Confidence 4455555565565433 55666678888887 77888876 788899999999999999999999999999999999
Q ss_pred CCCCC-cccccCCCCCcEEEccCCcCcccChhhhccccc----------cccCchhhcCCCCCcEEEccCCcccccccCC
Q 041360 304 CRLKD-IAIVGQLKKLEILSFRDSYIEELPHEIGQLTRL----------VVIAPNLISKFSQLEELYMGDSFSQWDKVEG 372 (561)
Q Consensus 304 ~~l~~-p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L----------~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~ 372 (561)
|+++. |..++.|+ |+.|.+++|++..+|.+++-+..| +.+|.. ++.+.+|+.|++..|...
T Consensus 131 NqlS~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsq-l~~l~slr~l~vrRn~l~------ 202 (722)
T KOG0532|consen 131 NQLSHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQ-LGYLTSLRDLNVRRNHLE------ 202 (722)
T ss_pred chhhcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHH-hhhHHHHHHHHHhhhhhh------
Confidence 99999 99999887 999999999999999999966666 667776 889999999998887654
Q ss_pred CcccchHhhcCCCCCcEEEEeeccCcccCccc-ccccccEEEEE
Q 041360 373 GSNASLAELKGLSKLTTLEIQVRDAQILPQDL-VLVELQRYKIC 415 (561)
Q Consensus 373 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~ 415 (561)
..+.++..+ .|..|+++||.+..+|..+ .++.|+.|.+.
T Consensus 203 ---~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~Le 242 (722)
T KOG0532|consen 203 ---DLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLE 242 (722)
T ss_pred ---hCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeec
Confidence 333566644 6889999999999999876 67788887774
No 29
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.79 E-value=9.8e-09 Score=102.10 Aligned_cols=161 Identities=19% Similarity=0.184 Sum_probs=106.7
Q ss_pred CCceEEEccCCCccccC-------Ccc-CCCCccEEEeeccCCCCccccHHHHcCCCC---ccEEEecCCCCCC-----C
Q 041360 223 KGPIAISLPHRDIQELP-------ERL-QCPNLELFLLFRKGYGSMQISDLFFEGTEE---VKVLSLTGVRFSS-----L 286 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~-------~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~---Lr~L~l~~~~i~~-----l 286 (561)
+.++++.+.++.+...+ ..+ .+++|+.|+++++. +.......+..+.. |++|++++|.+.. +
T Consensus 51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l 128 (319)
T cd00116 51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA--LGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLL 128 (319)
T ss_pred CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC--CChhHHHHHHHHhccCcccEEEeeCCccchHHHHHH
Confidence 34677777776654212 122 57899999999987 33222223344444 9999999998763 3
Q ss_pred chhhcCC-CCCcEEEeCCCCCCC------cccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEE
Q 041360 287 PSSLGRL-FNLQTLCLGGCRLKD------IAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELY 359 (561)
Q Consensus 287 p~~i~~L-~~L~~L~l~~~~l~~------p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~ 359 (561)
...+..+ ++|+.|++++|.++. +..+..+.+|++|++++|.+.. .++. .++.. +..+++|+.|+
T Consensus 129 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~------~l~~~-l~~~~~L~~L~ 199 (319)
T cd00116 129 AKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGD--AGIR------ALAEG-LKANCNLEVLD 199 (319)
T ss_pred HHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCch--HHHH------HHHHH-HHhCCCCCEEe
Confidence 4567777 899999999999873 3466778899999999987653 1111 11111 45668899999
Q ss_pred ccCCcccccccCCCcccchHhhcCCCCCcEEEEeeccCc
Q 041360 360 MGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIQVRDAQ 398 (561)
Q Consensus 360 l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 398 (561)
+++|...... .......+..+++|+.|+++.|.+.
T Consensus 200 L~~n~i~~~~----~~~l~~~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 200 LNNNGLTDEG----ASALAETLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred ccCCccChHH----HHHHHHHhcccCCCCEEecCCCcCc
Confidence 9988653111 1123345667788888888877654
No 30
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.61 E-value=4.9e-09 Score=96.43 Aligned_cols=128 Identities=20% Similarity=0.279 Sum_probs=92.7
Q ss_pred CCceEEEccCCCccccCCccC-CCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEe
Q 041360 223 KGPIAISLPHRDIQELPERLQ-CPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCL 301 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l 301 (561)
+.+..+++++|.+..+.++.+ .+++|.|++++|+ +..+.. +..+.+|..|||++|.+.++-..-.+|-|.++|.|
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~--i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNR--IRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccc--eeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence 456777888888777777663 5788888888886 555544 36778888888888877766555556777888888
Q ss_pred CCCCCCCcccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCccc
Q 041360 302 GGCRLKDIAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQ 366 (561)
Q Consensus 302 ~~~~l~~p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~ 366 (561)
.+|.+...+.+++|.+|..||+++|+|..+-. + ..|++++.|+.+.+.+|...
T Consensus 360 a~N~iE~LSGL~KLYSLvnLDl~~N~Ie~lde----------V--~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 360 AQNKIETLSGLRKLYSLVNLDLSSNQIEELDE----------V--NHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred hhhhHhhhhhhHhhhhheeccccccchhhHHH----------h--cccccccHHHHHhhcCCCcc
Confidence 88877777778888888888888887765532 1 12778888888888777654
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.61 E-value=4e-08 Score=100.74 Aligned_cols=166 Identities=22% Similarity=0.283 Sum_probs=87.9
Q ss_pred CceEEEccCCCccccCCccCCC--CccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEe
Q 041360 224 GPIAISLPHRDIQELPERLQCP--NLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCL 301 (561)
Q Consensus 224 ~l~~l~l~~~~~~~l~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l 301 (561)
.+..+.+.++.+..++...... +|+.|+++++. +..+|..+ +.+++|+.|++++|.+..+|...+.+.+|+.|++
T Consensus 117 ~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~--i~~l~~~~-~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~l 193 (394)
T COG4886 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK--IESLPSPL-RNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDL 193 (394)
T ss_pred ceeEEecCCcccccCccccccchhhcccccccccc--hhhhhhhh-hccccccccccCCchhhhhhhhhhhhhhhhheec
Confidence 4555555555555555555332 56666665554 44444332 5556666666666666555555555555666666
Q ss_pred CCCCCCC-cccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHh
Q 041360 302 GGCRLKD-IAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAE 380 (561)
Q Consensus 302 ~~~~l~~-p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 380 (561)
+++++.. |..++.+..|++|.++++.+...+.. ++++.++..|.+.++... .....
T Consensus 194 s~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~--------------~~~~~~l~~l~l~~n~~~---------~~~~~ 250 (394)
T COG4886 194 SGNKISDLPPEIELLSALEELDLSNNSIIELLSS--------------LSNLKNLSGLELSNNKLE---------DLPES 250 (394)
T ss_pred cCCccccCchhhhhhhhhhhhhhcCCcceecchh--------------hhhcccccccccCCceee---------eccch
Confidence 6665555 44444555555665555544444433 344444444444443321 11234
Q ss_pred hcCCCCCcEEEEeeccCcccCcccccccccEEEEE
Q 041360 381 LKGLSKLTTLEIQVRDAQILPQDLVLVELQRYKIC 415 (561)
Q Consensus 381 l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 415 (561)
++.+..++.|+++.|.++.++....+.+++.|++.
T Consensus 251 ~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s 285 (394)
T COG4886 251 IGNLSNLETLDLSNNQISSISSLGSLTNLRELDLS 285 (394)
T ss_pred hccccccceeccccccccccccccccCccCEEecc
Confidence 45555566666666666665554455566666553
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.56 E-value=1e-08 Score=94.42 Aligned_cols=123 Identities=18% Similarity=0.265 Sum_probs=86.1
Q ss_pred CCccEEEecCCCCCCCchhhcCCCCCcEEEeCCCCCCCcccccCCCCCcEEEccCCcCcccCh---hhhccccc------
Q 041360 271 EEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLGGCRLKDIAIVGQLKKLEILSFRDSYIEELPH---EIGQLTRL------ 341 (561)
Q Consensus 271 ~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~p~~i~~L~~L~~L~l~~~~~~~lp~---~i~~L~~L------ 341 (561)
+.|..|||++|.|+.+-.++.-++.++.|++++|++.....+..|++|++||+++|.+.++-. .+|+.+.|
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~ 363 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK 363 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh
Confidence 668888999988888888888888899999998888776668888889999998886665532 34444433
Q ss_pred -cccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhcCCCCCcEEEEeeccCcccCc
Q 041360 342 -VVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIQVRDAQILPQ 402 (561)
Q Consensus 342 -~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 402 (561)
..+. +++++-+|..|++.+|.+. .-+....+++++.|+.|.+..|.+..++.
T Consensus 364 iE~LS--GL~KLYSLvnLDl~~N~Ie-------~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 364 IETLS--GLRKLYSLVNLDLSSNQIE-------ELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred Hhhhh--hhHhhhhheeccccccchh-------hHHHhcccccccHHHHHhhcCCCccccch
Confidence 1222 3566777777777777653 11233567777777777777776654443
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.55 E-value=5.4e-08 Score=70.28 Aligned_cols=58 Identities=26% Similarity=0.316 Sum_probs=31.1
Q ss_pred CccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCc-hhhcCCCCCcEEEeCCCC
Q 041360 246 NLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLP-SSLGRLFNLQTLCLGGCR 305 (561)
Q Consensus 246 ~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~ 305 (561)
+|++|++++|. +..+|...|.++++|++|++++|.++.+| ..+..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~--l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNK--LTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSST--ESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCC--CCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 45555555554 45555555555555555555555555543 344555555555555554
No 34
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.53 E-value=9.3e-08 Score=98.06 Aligned_cols=170 Identities=26% Similarity=0.302 Sum_probs=112.2
Q ss_pred CCCCccEEEeeccCCCCccccHHHHcCCC-CccEEEecCCCCCCCchhhcCCCCCcEEEeCCCCCCC-cccccCCCCCcE
Q 041360 243 QCPNLELFLLFRKGYGSMQISDLFFEGTE-EVKVLSLTGVRFSSLPSSLGRLFNLQTLCLGGCRLKD-IAIVGQLKKLEI 320 (561)
Q Consensus 243 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~-~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~-p~~i~~L~~L~~ 320 (561)
..+.++.|.+..+. +..++... ..+. +|+.|++++|.+..+|..+..+++|+.|++..|.+.+ |...+.+.+|+.
T Consensus 114 ~~~~l~~L~l~~n~--i~~i~~~~-~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 114 ELTNLTSLDLDNNN--ITDIPPLI-GLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190 (394)
T ss_pred cccceeEEecCCcc--cccCcccc-ccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhh
Confidence 45667777777775 66666654 4453 7777777777777777777777777777777777777 665557777777
Q ss_pred EEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhcCCCCCcEEEEeeccCccc
Q 041360 321 LSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIQVRDAQIL 400 (561)
Q Consensus 321 L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 400 (561)
|+++++.+..+|.. ++.+..|++|.+.+|... ..+..+.++.++..|.+..+.+..+
T Consensus 191 L~ls~N~i~~l~~~--------------~~~~~~L~~l~~~~N~~~---------~~~~~~~~~~~l~~l~l~~n~~~~~ 247 (394)
T COG4886 191 LDLSGNKISDLPPE--------------IELLSALEELDLSNNSII---------ELLSSLSNLKNLSGLELSNNKLEDL 247 (394)
T ss_pred eeccCCccccCchh--------------hhhhhhhhhhhhcCCcce---------ecchhhhhcccccccccCCceeeec
Confidence 77777777766643 245566888888877422 2335677888888888888877664
Q ss_pred Ccc-cccccccEEEEEeccccccCCCCccccceEEEecCC
Q 041360 401 PQD-LVLVELQRYKICIGEAWRMWGVTSEISRLVRLHGLE 439 (561)
Q Consensus 401 ~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~ 439 (561)
+.. ..+++++.|++.... ...+.......++..|++.+
T Consensus 248 ~~~~~~l~~l~~L~~s~n~-i~~i~~~~~~~~l~~L~~s~ 286 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQ-ISSISSLGSLTNLRELDLSG 286 (394)
T ss_pred cchhccccccceecccccc-ccccccccccCccCEEeccC
Confidence 443 366778888885332 22232233445555666654
No 35
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.46 E-value=1.5e-07 Score=67.91 Aligned_cols=58 Identities=24% Similarity=0.402 Sum_probs=49.4
Q ss_pred CCccEEEecCCCCCCCch-hhcCCCCCcEEEeCCCCCCC--cccccCCCCCcEEEccCCcC
Q 041360 271 EEVKVLSLTGVRFSSLPS-SLGRLFNLQTLCLGGCRLKD--IAIVGQLKKLEILSFRDSYI 328 (561)
Q Consensus 271 ~~Lr~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~~ 328 (561)
++|++|++++|.++.+|+ .+..+++|++|++++|.++. +..+..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 468999999999998874 67889999999999999888 47889999999999988864
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.41 E-value=4.6e-08 Score=94.77 Aligned_cols=156 Identities=21% Similarity=0.141 Sum_probs=87.4
Q ss_pred CCceEEEccCCCccccCC--cc-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhh--cCCCCCc
Q 041360 223 KGPIAISLPHRDIQELPE--RL-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSL--GRLFNLQ 297 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~--~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i--~~L~~L~ 297 (561)
+++|.+++.++.+...+. .. .|++++.|+++++-+.....-..+...+++|+.|+++.|.+....++. ..+.+|+
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 567777777777765553 22 677777777777641111112334467777777777777655433221 2456677
Q ss_pred EEEeCCCCCCC--c-ccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCc
Q 041360 298 TLCLGGCRLKD--I-AIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGS 374 (561)
Q Consensus 298 ~L~l~~~~l~~--p-~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 374 (561)
.|.++.|.++. . ..+-..++|+.|++..|...-. +..+ ..-+..|++|++++|......
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~----------~~~~---~~i~~~L~~LdLs~N~li~~~----- 262 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILI----------KATS---TKILQTLQELDLSNNNLIDFD----- 262 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccce----------ecch---hhhhhHHhhccccCCcccccc-----
Confidence 77777777654 2 4445566777777766631100 0001 234556667777766554222
Q ss_pred ccchHhhcCCCCCcEEEEeeccCc
Q 041360 375 NASLAELKGLSKLTTLEIQVRDAQ 398 (561)
Q Consensus 375 ~~~~~~l~~l~~L~~L~l~~~~~~ 398 (561)
.....+.++.|+.|.++.+.+.
T Consensus 263 --~~~~~~~l~~L~~Lnls~tgi~ 284 (505)
T KOG3207|consen 263 --QGYKVGTLPGLNQLNLSSTGIA 284 (505)
T ss_pred --cccccccccchhhhhccccCcc
Confidence 2244556666666666655554
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=8.6e-08 Score=92.95 Aligned_cols=177 Identities=18% Similarity=0.103 Sum_probs=117.4
Q ss_pred CCceEEEccCCCccccCCcc----CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCC--CchhhcCCCCC
Q 041360 223 KGPIAISLPHRDIQELPERL----QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSS--LPSSLGRLFNL 296 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~--lp~~i~~L~~L 296 (561)
..++.|+++.|-+..+..-. .+++|+.|.++.|. ...-.....-..+.+|+.|.++.|++.. +-..+..+++|
T Consensus 146 ~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl 224 (505)
T KOG3207|consen 146 PNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL 224 (505)
T ss_pred CcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence 57899999887664433221 68999999999886 1111111112357899999999999874 33445567889
Q ss_pred cEEEeCCCC-CCC-cccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCc
Q 041360 297 QTLCLGGCR-LKD-IAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGS 374 (561)
Q Consensus 297 ~~L~l~~~~-l~~-p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 374 (561)
..|+|.+|. +.. -....-++.|++|||++|.+..++.. +. ++.++.|+.|+++.+.+..-.. .+
T Consensus 225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~----------~~--~~~l~~L~~Lnls~tgi~si~~--~d 290 (505)
T KOG3207|consen 225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQG----------YK--VGTLPGLNQLNLSSTGIASIAE--PD 290 (505)
T ss_pred HHhhhhcccccceecchhhhhhHHhhccccCCcccccccc----------cc--cccccchhhhhccccCcchhcC--CC
Confidence 999999985 222 34445578899999999987766632 11 5677788888877765431111 12
Q ss_pred ccchHhhcCCCCCcEEEEeeccCcccCcc---cccccccEEEE
Q 041360 375 NASLAELKGLSKLTTLEIQVRDAQILPQD---LVLVELQRYKI 414 (561)
Q Consensus 375 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l 414 (561)
.........+++|+.|.+..|.+..++.. ..+++|+.|.+
T Consensus 291 ~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~ 333 (505)
T KOG3207|consen 291 VESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRI 333 (505)
T ss_pred ccchhhhcccccceeeecccCccccccccchhhccchhhhhhc
Confidence 34445567788999999998887655543 25566666665
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.31 E-value=2.1e-06 Score=92.61 Aligned_cols=80 Identities=23% Similarity=0.321 Sum_probs=37.3
Q ss_pred ccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCC-CCchhhcCCCCCcEEEeCCCCCCC--cccccCCCCCcEEEc
Q 041360 247 LELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFS-SLPSSLGRLFNLQTLCLGGCRLKD--IAIVGQLKKLEILSF 323 (561)
Q Consensus 247 L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~l~~--p~~i~~L~~L~~L~l 323 (561)
++.|+++++. ....+|..+ +++++|+.|+|++|.+. .+|..++.+.+|++|+|++|.+.. |..++++++|++|++
T Consensus 420 v~~L~L~~n~-L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQG-LRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCC-ccccCCHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 3444444444 223344433 44555555555555444 244445555555555555554443 444455555555555
Q ss_pred cCCcC
Q 041360 324 RDSYI 328 (561)
Q Consensus 324 ~~~~~ 328 (561)
++|.+
T Consensus 498 s~N~l 502 (623)
T PLN03150 498 NGNSL 502 (623)
T ss_pred cCCcc
Confidence 44443
No 39
>PLN03150 hypothetical protein; Provisional
Probab=98.17 E-value=5.5e-06 Score=89.40 Aligned_cols=101 Identities=23% Similarity=0.312 Sum_probs=85.4
Q ss_pred ceEEEccCCCcc-ccCCcc-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCC-CchhhcCCCCCcEEEe
Q 041360 225 PIAISLPHRDIQ-ELPERL-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSS-LPSSLGRLFNLQTLCL 301 (561)
Q Consensus 225 l~~l~l~~~~~~-~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~-lp~~i~~L~~L~~L~l 301 (561)
++.|+++++.+. .+|..+ .+++|+.|++++|. ....+|..+ +.+++|++|+|++|.+.. +|..++++.+|++|+|
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~-l~g~iP~~~-~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L 497 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNS-IRGNIPPSL-GSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL 497 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCc-ccCcCChHH-hCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence 778899988884 567666 78999999999998 445788775 999999999999999985 7999999999999999
Q ss_pred CCCCCCC--cccccCC-CCCcEEEccCCc
Q 041360 302 GGCRLKD--IAIVGQL-KKLEILSFRDSY 327 (561)
Q Consensus 302 ~~~~l~~--p~~i~~L-~~L~~L~l~~~~ 327 (561)
++|.+.. |..++.+ .++..+++.+|.
T Consensus 498 s~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 498 NGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred cCCcccccCChHHhhccccCceEEecCCc
Confidence 9999876 7777764 567888888773
No 40
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.17 E-value=3e-06 Score=56.01 Aligned_cols=37 Identities=32% Similarity=0.503 Sum_probs=22.5
Q ss_pred CccEEEecCCCCCCCchhhcCCCCCcEEEeCCCCCCC
Q 041360 272 EVKVLSLTGVRFSSLPSSLGRLFNLQTLCLGGCRLKD 308 (561)
Q Consensus 272 ~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~ 308 (561)
+|++|++++|.|+.+|+.+++|++|++|++++|.+++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCC
Confidence 5666666666666666666666666666666666554
No 41
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.02 E-value=3.2e-06 Score=90.95 Aligned_cols=134 Identities=17% Similarity=0.261 Sum_probs=96.2
Q ss_pred CCceEEEccCCCc--cccCCcc--CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcE
Q 041360 223 KGPIAISLPHRDI--QELPERL--QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQT 298 (561)
Q Consensus 223 ~~l~~l~l~~~~~--~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~ 298 (561)
.++++|++++... ...|..+ -+|.|++|.+.+-...... ...++.++++|+.||+|+++++.+ ..+++|+||+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~d-F~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDD-FSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchh-HHHHhhccCccceeecCCCCccCc-HHHhccccHHH
Confidence 6678888877443 2333333 6899999999987622222 344558899999999999999988 77999999999
Q ss_pred EEeCCCCCCC---cccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcc
Q 041360 299 LCLGGCRLKD---IAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFS 365 (561)
Q Consensus 299 L~l~~~~l~~---p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~ 365 (561)
|.+++=.+.. ..++-+|++|++||+|..+...-+.-+..- + +.-..|++|+-||.++...
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qY-----l--ec~~~LpeLrfLDcSgTdi 262 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQY-----L--ECGMVLPELRFLDCSGTDI 262 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHH-----H--HhcccCccccEEecCCcch
Confidence 9999988765 578899999999999987544444211110 0 1113477888888887544
No 42
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.02 E-value=2.5e-06 Score=80.77 Aligned_cols=252 Identities=15% Similarity=0.133 Sum_probs=134.0
Q ss_pred CCCCccEEEeeccCCCCc--cccHHHHcCCCCccEEEecCCC----CCCCch-------hhcCCCCCcEEEeCCCCCCC-
Q 041360 243 QCPNLELFLLFRKGYGSM--QISDLFFEGTEEVKVLSLTGVR----FSSLPS-------SLGRLFNLQTLCLGGCRLKD- 308 (561)
Q Consensus 243 ~~~~L~~L~l~~~~~~~~--~~~~~~~~~l~~Lr~L~l~~~~----i~~lp~-------~i~~L~~L~~L~l~~~~l~~- 308 (561)
.+..++.++++++.+... ..-...+.+.+.||.-++++-- ..++|+ .+-..++|++|+|+.|-+..
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 577888899998862111 1222334667788888887642 122444 34556688888888886443
Q ss_pred -c----ccccCCCCCcEEEccCCcCcccChh-hh-ccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhh
Q 041360 309 -I----AIVGQLKKLEILSFRDSYIEELPHE-IG-QLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAEL 381 (561)
Q Consensus 309 -p----~~i~~L~~L~~L~l~~~~~~~lp~~-i~-~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 381 (561)
+ .-|.....|++|++.+|.+.....+ ++ -|..|. .. .-+.+-+.|+++....|..... ...+....+
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~-~~-kk~~~~~~Lrv~i~~rNrlen~----ga~~~A~~~ 181 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA-VN-KKAASKPKLRVFICGRNRLENG----GATALAEAF 181 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH-HH-hccCCCcceEEEEeeccccccc----cHHHHHHHH
Confidence 3 3456677888888888866543221 11 122222 11 1144556777777766654211 122334456
Q ss_pred cCCCCCcEEEEeeccCcccCcc------cccccccEEEEEeccccccCCCCccccceEEEecCCccchhhhhhhHHHhhc
Q 041360 382 KGLSKLTTLEIQVRDAQILPQD------LVLVELQRYKICIGEAWRMWGVTSEISRLVRLHGLENVSTLLENYGMKMLLK 455 (561)
Q Consensus 382 ~~l~~L~~L~l~~~~~~~~~~~------~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~ll~ 455 (561)
+..+.|+.+.++.|.+..-... ..+++|+.|++.... +. ..+ .......+..+ +
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft---------------~eg---s~~LakaL~s~-~ 241 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FT---------------LEG---SVALAKALSSW-P 241 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hh---------------hHH---HHHHHHHhccc-c
Confidence 6666777777777665422211 145566666553221 00 000 12222333333 6
Q ss_pred cccceeeccccC----cccccccccCCCCCCCccEEEEecCCccchhhcccCcccCCcCccccccccccccc
Q 041360 456 EAEEIHLNELKG----VQNAVHELDDGEGFPRLKHLRVESCSEILHIVGSVGRVRRKVFPLLESLSLKKASF 523 (561)
Q Consensus 456 ~L~~L~l~~~~~----~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 523 (561)
+|+.|++..|.- ...+..-+ .+++|+|+.|.+.+| .++.=....-.......|.|++|.+.+|.-
T Consensus 242 ~L~El~l~dcll~~~Ga~a~~~al--~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 242 HLRELNLGDCLLENEGAIAFVDAL--KESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred hheeecccccccccccHHHHHHHH--hccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 777888877742 22222222 345888888888875 332111000001223478888888887763
No 43
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.01 E-value=2.2e-07 Score=89.68 Aligned_cols=104 Identities=18% Similarity=0.140 Sum_probs=67.5
Q ss_pred CCceEEEccCCCccccCC---c-cCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCC-CCCC-ch-hhcCCCC
Q 041360 223 KGPIAISLPHRDIQELPE---R-LQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVR-FSSL-PS-SLGRLFN 295 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~---~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-i~~l-p~-~i~~L~~ 295 (561)
..++.+++.++.-..... . ..+++++.|.+.+|.........++-..+++|++|++..|. ++.. -+ -...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 456777777765432221 1 17899999999888733333444454678999999999853 5442 22 3346789
Q ss_pred CcEEEeCCCC-CCC--c-ccccCCCCCcEEEccCC
Q 041360 296 LQTLCLGGCR-LKD--I-AIVGQLKKLEILSFRDS 326 (561)
Q Consensus 296 L~~L~l~~~~-l~~--p-~~i~~L~~L~~L~l~~~ 326 (561)
|.||++++|. ++. . .-......++.+...+|
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC 252 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC 252 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhccc
Confidence 9999999997 655 2 33445556777766665
No 44
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.00 E-value=1e-05 Score=53.52 Aligned_cols=39 Identities=26% Similarity=0.385 Sum_probs=33.5
Q ss_pred CCCcEEEeCCCCCCC-cccccCCCCCcEEEccCCcCcccC
Q 041360 294 FNLQTLCLGGCRLKD-IAIVGQLKKLEILSFRDSYIEELP 332 (561)
Q Consensus 294 ~~L~~L~l~~~~l~~-p~~i~~L~~L~~L~l~~~~~~~lp 332 (561)
++|++|++++|.++. |+.+++|++|++|++++|.+..++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 479999999999999 777999999999999999988765
No 45
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.97 E-value=4.7e-06 Score=89.68 Aligned_cols=141 Identities=18% Similarity=0.154 Sum_probs=94.1
Q ss_pred CCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCC--CchhhcCCCCCcEEEeCCCCCCCcccccCCCCCcEE
Q 041360 244 CPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSS--LPSSLGRLFNLQTLCLGGCRLKDIAIVGQLKKLEIL 321 (561)
Q Consensus 244 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~--lp~~i~~L~~L~~L~l~~~~l~~p~~i~~L~~L~~L 321 (561)
-.+|+.|+++|........|..+..-++.|+.|.+++-.+.. +-.-..+++||..||+++|.++....+++|++||+|
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L 200 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVL 200 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHH
Confidence 467888888887645556667766678888888888765433 233445778888888888888777888888888888
Q ss_pred EccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhcCCCCCcEEEEeeccCc
Q 041360 322 SFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIQVRDAQ 398 (561)
Q Consensus 322 ~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 398 (561)
.+++=.+..-..- ..+.+|++|+.||++......... -....++--..+++||.|+.+++++.
T Consensus 201 ~mrnLe~e~~~~l------------~~LF~L~~L~vLDIS~~~~~~~~~--ii~qYlec~~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 201 SMRNLEFESYQDL------------IDLFNLKKLRVLDISRDKNNDDTK--IIEQYLECGMVLPELRFLDCSGTDIN 263 (699)
T ss_pred hccCCCCCchhhH------------HHHhcccCCCeeeccccccccchH--HHHHHHHhcccCccccEEecCCcchh
Confidence 7765444332110 126789999999988765432221 01122333445889999999987764
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=9.2e-07 Score=81.75 Aligned_cols=55 Identities=24% Similarity=0.338 Sum_probs=32.4
Q ss_pred CccEEEecCCCCCC--CchhhcCCCCCcEEEeCCCCCCC--cccccCCCCCcEEEccCC
Q 041360 272 EVKVLSLTGVRFSS--LPSSLGRLFNLQTLCLGGCRLKD--IAIVGQLKKLEILSFRDS 326 (561)
Q Consensus 272 ~Lr~L~l~~~~i~~--lp~~i~~L~~L~~L~l~~~~l~~--p~~i~~L~~L~~L~l~~~ 326 (561)
.|++|||+...|+. +-.-++.+..|+.|.+.+.++.+ ...|.+=.+|+.|+++.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~ 244 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMC 244 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccc
Confidence 46666666666543 34445556666666666666655 255555556666666655
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.86 E-value=1.5e-06 Score=89.37 Aligned_cols=125 Identities=25% Similarity=0.356 Sum_probs=72.3
Q ss_pred CceEEEccCCCccccCCcc-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeC
Q 041360 224 GPIAISLPHRDIQELPERL-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLG 302 (561)
Q Consensus 224 ~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~ 302 (561)
.+..++++.+.+...-..+ .+.+|+.|++..+. +..+...+ ..+.+|++|++++|.|+.+.. +..+..|+.|++.
T Consensus 73 ~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~--i~~i~~~l-~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 73 SLKELNLRQNLIAKILNHLSKLKSLEALDLYDNK--IEKIENLL-SSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLS 148 (414)
T ss_pred hHHhhccchhhhhhhhcccccccceeeeeccccc--hhhcccch-hhhhcchheeccccccccccc-hhhccchhhheec
Confidence 3444445555554422222 56666677776665 44444322 556677777777776666543 4556667777777
Q ss_pred CCCCCCcccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcc
Q 041360 303 GCRLKDIAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFS 365 (561)
Q Consensus 303 ~~~l~~p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~ 365 (561)
+|.+.....+..+..|+.+++++|.+..+... . ...+.+++.+.+.+|..
T Consensus 149 ~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~------------~-~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 149 GNLISDISGLESLKSLKLLDLSYNRIVDIEND------------E-LSELISLEELDLGGNSI 198 (414)
T ss_pred cCcchhccCCccchhhhcccCCcchhhhhhhh------------h-hhhccchHHHhccCCch
Confidence 77666655555666677777766666554421 1 24555666666666543
No 48
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.84 E-value=1.9e-06 Score=70.54 Aligned_cols=108 Identities=18% Similarity=0.200 Sum_probs=73.5
Q ss_pred ceEEEccCCCccccCCcc----CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEE
Q 041360 225 PIAISLPHRDIQELPERL----QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLC 300 (561)
Q Consensus 225 l~~l~l~~~~~~~l~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~ 300 (561)
...++++.|.+..+++.. ...+|...++++|. +..+|..+-.+.+.+..|++++|.+..+|.++..++.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~--fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG--FKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccch--hhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 344555555554444332 45566667777776 677777776666677777777777777777777777777777
Q ss_pred eCCCCCCC-cccccCCCCCcEEEccCCcCcccChh
Q 041360 301 LGGCRLKD-IAIVGQLKKLEILSFRDSYIEELPHE 334 (561)
Q Consensus 301 l~~~~l~~-p~~i~~L~~L~~L~l~~~~~~~lp~~ 334 (561)
++.|.+.. |..+-.|.+|-.|+..++.+..+|-.
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~d 141 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVD 141 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCccccCcHH
Confidence 77777666 76666677777777777766666644
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.81 E-value=2.8e-06 Score=87.45 Aligned_cols=104 Identities=25% Similarity=0.272 Sum_probs=89.0
Q ss_pred CCceEEEccCCCccccCC-ccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEe
Q 041360 223 KGPIAISLPHRDIQELPE-RLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCL 301 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l 301 (561)
+++..+++.+|.+..+.. .-.+++|++|+++++. +..+.. +..+..|+.|++++|.+..+.. +..+.+|+.+++
T Consensus 95 ~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~--I~~i~~--l~~l~~L~~L~l~~N~i~~~~~-~~~l~~L~~l~l 169 (414)
T KOG0531|consen 95 KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK--ITKLEG--LSTLTLLKELNLSGNLISDISG-LESLKSLKLLDL 169 (414)
T ss_pred cceeeeeccccchhhcccchhhhhcchheeccccc--cccccc--hhhccchhhheeccCcchhccC-CccchhhhcccC
Confidence 789999999999988887 4479999999999997 777766 4788899999999999988754 455999999999
Q ss_pred CCCCCCCccc--ccCCCCCcEEEccCCcCccc
Q 041360 302 GGCRLKDIAI--VGQLKKLEILSFRDSYIEEL 331 (561)
Q Consensus 302 ~~~~l~~p~~--i~~L~~L~~L~l~~~~~~~l 331 (561)
++|++..... +..+.+|+.+++.++.+..+
T Consensus 170 ~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 170 SYNRIVDIENDELSELISLEELDLGGNSIREI 201 (414)
T ss_pred CcchhhhhhhhhhhhccchHHHhccCCchhcc
Confidence 9999888333 68999999999999877655
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.77 E-value=7.9e-07 Score=91.54 Aligned_cols=117 Identities=21% Similarity=0.229 Sum_probs=63.6
Q ss_pred CccEEEecCCCCCCCchhhcCCCCCcEEEeCCCCCCCcccccCCCCCcEEEccCCcCcccCh---hhhccccc-------
Q 041360 272 EVKVLSLTGVRFSSLPSSLGRLFNLQTLCLGGCRLKDIAIVGQLKKLEILSFRDSYIEELPH---EIGQLTRL------- 341 (561)
Q Consensus 272 ~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~p~~i~~L~~L~~L~l~~~~~~~lp~---~i~~L~~L------- 341 (561)
.|.+-+.+.|.+..+-.++.-++.|+.|+|++|++.....+..+++|++||+++|.+..+|. .-++|..|
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l 244 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNAL 244 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccHH
Confidence 45555666666666666666666666666666666665566666666666666665555542 11112222
Q ss_pred cccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhcCCCCCcEEEEeeccC
Q 041360 342 VVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIQVRDA 397 (561)
Q Consensus 342 ~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 397 (561)
+++ .+|.+|.+|+.||++.|.+. +...+.-|+.+..|+.|.+.+|.+
T Consensus 245 ~tL--~gie~LksL~~LDlsyNll~-------~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 245 TTL--RGIENLKSLYGLDLSYNLLS-------EHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred Hhh--hhHHhhhhhhccchhHhhhh-------cchhhhHHHHHHHHHHHhhcCCcc
Confidence 111 12566666666666666443 112234455555666666665543
No 51
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=2.6e-06 Score=78.85 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=27.4
Q ss_pred hcCCCCCcEEEccCCcccccccCCCcccchHhhcCCCCCcEEEEeec
Q 041360 349 ISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIQVR 395 (561)
Q Consensus 349 i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 395 (561)
..++++|.+||+++|.... ...+.++.+++.|++|.++.+
T Consensus 309 ~~rcp~l~~LDLSD~v~l~-------~~~~~~~~kf~~L~~lSlsRC 348 (419)
T KOG2120|consen 309 VRRCPNLVHLDLSDSVMLK-------NDCFQEFFKFNYLQHLSLSRC 348 (419)
T ss_pred HHhCCceeeeccccccccC-------chHHHHHHhcchheeeehhhh
Confidence 3577788888888775442 245677777788888777743
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.64 E-value=1e-06 Score=90.71 Aligned_cols=127 Identities=19% Similarity=0.139 Sum_probs=95.3
Q ss_pred CCceEEEccCCCccccCCcc-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEe
Q 041360 223 KGPIAISLPHRDIQELPERL-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCL 301 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l 301 (561)
..+..+++++|.+..+-..+ -++.++.|++++|. +..+. ++..+.+|+.||++.|.+..+|.-=..-.+|+.|++
T Consensus 164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk--~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~l 239 (1096)
T KOG1859|consen 164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNK--FTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNL 239 (1096)
T ss_pred hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh--hhhhH--HHHhcccccccccccchhccccccchhhhhheeeee
Confidence 46778888888887666666 46889999999998 55554 358999999999999999988862222234999999
Q ss_pred CCCCCCCcccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcc
Q 041360 302 GGCRLKDIAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFS 365 (561)
Q Consensus 302 ~~~~l~~p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~ 365 (561)
++|.++....|.+|++|+.||+++|-+...- .+. .++.|..|.+|.+.||..
T Consensus 240 rnN~l~tL~gie~LksL~~LDlsyNll~~hs----------eL~--pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNNALTTLRGIENLKSLYGLDLSYNLLSEHS----------ELE--PLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccHHHhhhhHHhhhhhhccchhHhhhhcch----------hhh--HHHHHHHHHHHhhcCCcc
Confidence 9999988888999999999999998654331 111 155666667777777654
No 53
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.60 E-value=1.2e-05 Score=74.63 Aligned_cols=60 Identities=32% Similarity=0.340 Sum_probs=32.9
Q ss_pred cCCCCccEEEecCCCCCC---CchhhcCCCCCcEEEeCCCCCCC-cccc-cCCCCCcEEEccCCc
Q 041360 268 EGTEEVKVLSLTGVRFSS---LPSSLGRLFNLQTLCLGGCRLKD-IAIV-GQLKKLEILSFRDSY 327 (561)
Q Consensus 268 ~~l~~Lr~L~l~~~~i~~---lp~~i~~L~~L~~L~l~~~~l~~-p~~i-~~L~~L~~L~l~~~~ 327 (561)
..+.+++.|||.+|.|.. +-.-+.++++|++|+++.|.+.. +..+ -.+.+|++|-+.++.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~ 132 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTG 132 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCC
Confidence 345566666666666543 22233456666666666666554 3333 245566666666554
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.49 E-value=0.00022 Score=62.80 Aligned_cols=101 Identities=24% Similarity=0.235 Sum_probs=61.6
Q ss_pred CCceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCc--hhhcCCCCCcEEE
Q 041360 223 KGPIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLP--SSLGRLFNLQTLC 300 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp--~~i~~L~~L~~L~ 300 (561)
.+...+++++|.+..++....++.|.+|.+..|. +..+.+.+-.-+++|..|.|.+|++..+- ..+..++.|+||.
T Consensus 42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNr--It~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNR--ITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhcccCCCccccceEEecCCc--ceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 4556666666666555554566677777776665 55665555444556777777777666542 2355566677777
Q ss_pred eCCCCCCC-c----ccccCCCCCcEEEccC
Q 041360 301 LGGCRLKD-I----AIVGQLKKLEILSFRD 325 (561)
Q Consensus 301 l~~~~l~~-p----~~i~~L~~L~~L~l~~ 325 (561)
+-+|.+++ . -.++++++|++||...
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhh
Confidence 66666554 2 3456666666666644
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.49 E-value=0.00035 Score=69.65 Aligned_cols=109 Identities=14% Similarity=0.206 Sum_probs=66.2
Q ss_pred CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCC-CCCCCchhhcCCCCCcEEEeCCC-CCCC-cccccCCCCCc
Q 041360 243 QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGV-RFSSLPSSLGRLFNLQTLCLGGC-RLKD-IAIVGQLKKLE 319 (561)
Q Consensus 243 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~-~i~~lp~~i~~L~~L~~L~l~~~-~l~~-p~~i~~L~~L~ 319 (561)
.+.+++.|++++|. +..+|. -..+|+.|.++++ .++.+|..+. .+|++|++++| .+.. |+ +|+
T Consensus 50 ~~~~l~~L~Is~c~--L~sLP~----LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~------sLe 115 (426)
T PRK15386 50 EARASGRLYIKDCD--IESLPV----LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPE------SVR 115 (426)
T ss_pred HhcCCCEEEeCCCC--CcccCC----CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCccccccccc------ccc
Confidence 46788888888885 777772 2346888888875 4666776553 57888888888 4665 54 356
Q ss_pred EEEccCCc---CcccChhhhcccc--ccccCchhhc-CC-CCCcEEEccCCcc
Q 041360 320 ILSFRDSY---IEELPHEIGQLTR--LVVIAPNLIS-KF-SQLEELYMGDSFS 365 (561)
Q Consensus 320 ~L~l~~~~---~~~lp~~i~~L~~--L~~l~~~~i~-~l-~~L~~L~l~~~~~ 365 (561)
+|++..+. +..+|.++..|.- ........+. .+ ++|++|++.+|..
T Consensus 116 ~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~ 168 (426)
T PRK15386 116 SLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSN 168 (426)
T ss_pred eEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCc
Confidence 66665543 5667776655431 0000000011 12 4677777777653
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.43 E-value=2.8e-05 Score=63.85 Aligned_cols=97 Identities=23% Similarity=0.291 Sum_probs=79.2
Q ss_pred CCCCccEEEeeccCCCCccccHHH--HcCCCCccEEEecCCCCCCCchhhcCCC-CCcEEEeCCCCCCC-cccccCCCCC
Q 041360 243 QCPNLELFLLFRKGYGSMQISDLF--FEGTEEVKVLSLTGVRFSSLPSSLGRLF-NLQTLCLGGCRLKD-IAIVGQLKKL 318 (561)
Q Consensus 243 ~~~~L~~L~l~~~~~~~~~~~~~~--~~~l~~Lr~L~l~~~~i~~lp~~i~~L~-~L~~L~l~~~~l~~-p~~i~~L~~L 318 (561)
+...+..++++.|. +..+++.. ..+..+|...++++|.+.++|+.+.... -+.+|++.+|.+.+ |.++..++.|
T Consensus 25 dakE~h~ldLssc~--lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aL 102 (177)
T KOG4579|consen 25 DAKELHFLDLSSCQ--LMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPAL 102 (177)
T ss_pred HHHHhhhcccccch--hhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHh
Confidence 34566778888886 55554432 2567888999999999999999887654 89999999999999 9889999999
Q ss_pred cEEEccCCcCcccChhhhccccc
Q 041360 319 EILSFRDSYIEELPHEIGQLTRL 341 (561)
Q Consensus 319 ~~L~l~~~~~~~lp~~i~~L~~L 341 (561)
+.|+++.|.+...|.-|-.|.+|
T Consensus 103 r~lNl~~N~l~~~p~vi~~L~~l 125 (177)
T KOG4579|consen 103 RSLNLRFNPLNAEPRVIAPLIKL 125 (177)
T ss_pred hhcccccCccccchHHHHHHHhH
Confidence 99999999999998876666555
No 57
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.22 E-value=2e-05 Score=76.57 Aligned_cols=282 Identities=17% Similarity=0.123 Sum_probs=146.2
Q ss_pred CCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCC-CCC-Cchhhc-CCCCCcEEEeCCCC-CCC--cc-cccCCCC
Q 041360 245 PNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVR-FSS-LPSSLG-RLFNLQTLCLGGCR-LKD--IA-IVGQLKK 317 (561)
Q Consensus 245 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-i~~-lp~~i~-~L~~L~~L~l~~~~-l~~--p~-~i~~L~~ 317 (561)
..|+.|.+.++...-..-...+-..++++..|++.++. ++. .-.+++ .+.+|++|++-.|. ++. .. -....++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 46788888887611122223444688899999888875 332 122333 56789999999987 666 33 4557889
Q ss_pred CcEEEccCC-cCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhcCCCCCcEEEEe-ec
Q 041360 318 LEILSFRDS-YIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIQ-VR 395 (561)
Q Consensus 318 L~~L~l~~~-~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~-~~ 395 (561)
|++|++++| .+.. .++ + . ...+.+.++++...||.... .++....=.....+-++++. ++
T Consensus 218 L~~lNlSwc~qi~~--~gv---~------~-~~rG~~~l~~~~~kGC~e~~------le~l~~~~~~~~~i~~lnl~~c~ 279 (483)
T KOG4341|consen 218 LKYLNLSWCPQISG--NGV---Q------A-LQRGCKELEKLSLKGCLELE------LEALLKAAAYCLEILKLNLQHCN 279 (483)
T ss_pred HHHhhhccCchhhc--Ccc---h------H-Hhccchhhhhhhhccccccc------HHHHHHHhccChHhhccchhhhc
Confidence 999999998 4443 111 0 0 02334444444444442210 00111111111122222221 22
Q ss_pred cCcccCcc---cccccccEEEEEecccccc---CCCCccccceEEEecCCccchhhhhhhHHHh---hccccceeecccc
Q 041360 396 DAQILPQD---LVLVELQRYKICIGEAWRM---WGVTSEISRLVRLHGLENVSTLLENYGMKML---LKEAEEIHLNELK 466 (561)
Q Consensus 396 ~~~~~~~~---~~~~~L~~L~l~~~~~~~~---~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~l---l~~L~~L~l~~~~ 466 (561)
.+++...+ -.+..|+.+....+...+. |.-.....++..+.+..|. .....++..+ -+.|+.+++.+|.
T Consensus 280 ~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~--~fsd~~ft~l~rn~~~Le~l~~e~~~ 357 (483)
T KOG4341|consen 280 QLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQ--QFSDRGFTMLGRNCPHLERLDLEECG 357 (483)
T ss_pred cccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccc--hhhhhhhhhhhcCChhhhhhcccccc
Confidence 22221111 1344445444433322221 2111222333333333321 1112222221 3788899988876
Q ss_pred CcccccccccCCCCCCCccEEEEecCCccchhhcccCcccCCcCccccccccccccc---cccCCCCCCCCCCCCcccCC
Q 041360 467 GVQNAVHELDDGEGFPRLKHLRVESCSEILHIVGSVGRVRRKVFPLLESLSLKKASF---VILHGQKPTAASKGPEREKP 543 (561)
Q Consensus 467 ~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~c~~---~~~~~~~~~~~l~~L~~L~i 543 (561)
...+-...-. ..+.+.|+.|.+++|..++.-.-..-.....++..|+.+.+.+||. ..... +..+++|+.+++
T Consensus 358 ~~~d~tL~sl-s~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~---l~~c~~Leri~l 433 (483)
T KOG4341|consen 358 LITDGTLASL-SRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEH---LSICRNLERIEL 433 (483)
T ss_pred eehhhhHhhh-ccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHH---HhhCcccceeee
Confidence 5444311000 4578999999999998776541001012346778899999999997 22111 456778999888
Q ss_pred Ccccccc
Q 041360 544 TTSLGFN 550 (561)
Q Consensus 544 ~~c~~l~ 550 (561)
.+|.+..
T Consensus 434 ~~~q~vt 440 (483)
T KOG4341|consen 434 IDCQDVT 440 (483)
T ss_pred echhhhh
Confidence 8887654
No 58
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.22 E-value=0.00024 Score=67.74 Aligned_cols=134 Identities=19% Similarity=0.214 Sum_probs=92.9
Q ss_pred CCceEEEccCCCccccCCc-----c-CCCCccEEEeeccCCCCcc--ccHHHHcCCCCccEEEecCCCCCC-----Cchh
Q 041360 223 KGPIAISLPHRDIQELPER-----L-QCPNLELFLLFRKGYGSMQ--ISDLFFEGTEEVKVLSLTGVRFSS-----LPSS 289 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~-----~-~~~~L~~L~l~~~~~~~~~--~~~~~~~~l~~Lr~L~l~~~~i~~-----lp~~ 289 (561)
.++|.+....|+...-+.. + ..+.|+.+.+..+...... ....-|..++||++|||.+|.++. +.+.
T Consensus 157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka 236 (382)
T KOG1909|consen 157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA 236 (382)
T ss_pred cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence 6788888888888655542 2 4678999999888622221 122224789999999999998765 5667
Q ss_pred hcCCCCCcEEEeCCCCCCC--c----ccc-cCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccC
Q 041360 290 LGRLFNLQTLCLGGCRLKD--I----AIV-GQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGD 362 (561)
Q Consensus 290 i~~L~~L~~L~l~~~~l~~--p----~~i-~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~ 362 (561)
++.+++|+.|++++|.++. . ..+ ...++|++|.+.+|.+..-.... + ...+...+.|..|++.+
T Consensus 237 L~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~--------l-a~~~~ek~dL~kLnLng 307 (382)
T KOG1909|consen 237 LSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALA--------L-AACMAEKPDLEKLNLNG 307 (382)
T ss_pred hcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHH--------H-HHHHhcchhhHHhcCCc
Confidence 7888899999999998765 1 222 23678999999998766322110 0 11245677888888888
Q ss_pred Ccc
Q 041360 363 SFS 365 (561)
Q Consensus 363 ~~~ 365 (561)
|..
T Consensus 308 N~l 310 (382)
T KOG1909|consen 308 NRL 310 (382)
T ss_pred ccc
Confidence 866
No 59
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.19 E-value=0.00034 Score=65.18 Aligned_cols=85 Identities=24% Similarity=0.194 Sum_probs=59.0
Q ss_pred CCCCccEEEeeccCCCCcccc--HHHHcCCCCccEEEecCCCCCCCchhh-cCCCCCcEEEeCCCCCCC---cccccCCC
Q 041360 243 QCPNLELFLLFRKGYGSMQIS--DLFFEGTEEVKVLSLTGVRFSSLPSSL-GRLFNLQTLCLGGCRLKD---IAIVGQLK 316 (561)
Q Consensus 243 ~~~~L~~L~l~~~~~~~~~~~--~~~~~~l~~Lr~L~l~~~~i~~lp~~i-~~L~~L~~L~l~~~~l~~---p~~i~~L~ 316 (561)
.++.++.+++.+|. +..+. ..+..+|++|++|+++.|.+...-+++ ..+.+|++|.|.++.+.. -..+..++
T Consensus 69 ~~~~v~elDL~~N~--iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 69 SVTDVKELDLTGNL--ISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLP 146 (418)
T ss_pred Hhhhhhhhhcccch--hccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcch
Confidence 57778888888876 33322 334578889999999988765433333 466788999998888655 36677787
Q ss_pred CCcEEEccCCcCc
Q 041360 317 KLEILSFRDSYIE 329 (561)
Q Consensus 317 ~L~~L~l~~~~~~ 329 (561)
.++.|+++.|+..
T Consensus 147 ~vtelHmS~N~~r 159 (418)
T KOG2982|consen 147 KVTELHMSDNSLR 159 (418)
T ss_pred hhhhhhhccchhh
Confidence 8888877776433
No 60
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.16 E-value=0.0077 Score=69.06 Aligned_cols=170 Identities=14% Similarity=0.206 Sum_probs=106.2
Q ss_pred CEEeeccchhh--hcccCCcceEecC----CCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHcCCChHHHHHHHHHHc
Q 041360 1 MILTSRNRDLL--ERDMNSQKNFLIE----VLSKEEALQLFENILGDSTKTSTIQPIADEIVKRCGGLPVAVTTVANALK 74 (561)
Q Consensus 1 IlvTTR~~~va--~~~~~~~~~~~l~----~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~ 74 (561)
+|||||..--. ..........+++ +++.+|+.++|....+... -.+.+.++.+.++|.|+++..++..++
T Consensus 155 lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~~----~~~~~~~l~~~t~Gwp~~l~l~~~~~~ 230 (903)
T PRK04841 155 LVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSPI----EAAESSRLCDDVEGWATALQLIALSAR 230 (903)
T ss_pred EEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCCC----CHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 46899974211 0000112355666 9999999999998765322 246688999999999999999988776
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCCCchhhHHHHHHHH-HHhcCChHHHHHHHhhcccCCCcccCHHHHHHHHhhcCccccc
Q 041360 75 SKSLDIWKDALSQLRSSNPREIDGMDKNVYTSIELS-YNLLASKEAKSLFRLCGLYNEGHAIQVASLLRYGMGWGLFKNV 153 (561)
Q Consensus 75 ~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~s-y~~L~~~~~k~cfl~~s~fp~~~~~~~~~l~~~w~a~g~~~~~ 153 (561)
..+. ........+... ....+...+.-. |+.||++ .+..+...|+++ .++...+-.+. |
T Consensus 231 ~~~~-~~~~~~~~~~~~-------~~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~---~~~~~l~~~l~---~----- 290 (903)
T PRK04841 231 QNNS-SLHDSARRLAGI-------NASHLSDYLVEEVLDNVDLE-TRHFLLRCSVLR---SMNDALIVRVT---G----- 290 (903)
T ss_pred hCCC-chhhhhHhhcCC-------CchhHHHHHHHHHHhcCCHH-HHHHHHHhcccc---cCCHHHHHHHc---C-----
Confidence 4321 011111111100 123355544433 7899997 999999999987 45544433321 1
Q ss_pred ccHHHHHHHHHHHHHHHHHcCcccc-cC-CCCceehhHHHHHHHHHHhh
Q 041360 154 YTLEEARSRVHRLIDNLKSSCLLLD-GD-GKDEVKMHDVIHVVAVSIAT 200 (561)
Q Consensus 154 ~~~~~~~~~~~~~i~~L~~~sll~~-~~-~~~~~~mh~lv~~~~~~~~~ 200 (561)
..++ .+.++.|.+.+++.. .+ ....|..|++++++.+....
T Consensus 291 --~~~~----~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~ 333 (903)
T PRK04841 291 --EENG----QMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQ 333 (903)
T ss_pred --CCcH----HHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHH
Confidence 1112 347778888888653 22 33468899999999987753
No 61
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.14 E-value=0.001 Score=66.37 Aligned_cols=98 Identities=20% Similarity=0.252 Sum_probs=62.3
Q ss_pred CCceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCC-CCCCCchhhcCCCCCcEEEe
Q 041360 223 KGPIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGV-RFSSLPSSLGRLFNLQTLCL 301 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~-~i~~lp~~i~~L~~L~~L~l 301 (561)
.++++|++++|.+..+|. --++|++|.+.+|. .+..+|..+ ..+|++|++++| .+..+|.+ |++|++
T Consensus 52 ~~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~-nLtsLP~~L---P~nLe~L~Ls~Cs~L~sLP~s------Le~L~L 119 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV--LPNELTEITIENCN-NLTTLPGSI---PEGLEKLTVCHCPEISGLPES------VRSLEI 119 (426)
T ss_pred cCCCEEEeCCCCCcccCC--CCCCCcEEEccCCC-CcccCCchh---hhhhhheEccCcccccccccc------cceEEe
Confidence 457788888888877773 12358888888776 566666544 257888888887 56667654 555555
Q ss_pred CCCC---CCC-cccccCC------------------CCCcEEEccCCcCcccC
Q 041360 302 GGCR---LKD-IAIVGQL------------------KKLEILSFRDSYIEELP 332 (561)
Q Consensus 302 ~~~~---l~~-p~~i~~L------------------~~L~~L~l~~~~~~~lp 332 (561)
..+. +.. |+++..| .+|++|++++|....+|
T Consensus 120 ~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP 172 (426)
T PRK15386 120 KGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILP 172 (426)
T ss_pred CCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCc
Confidence 5443 333 4444333 36788888777654444
No 62
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.12 E-value=0.00076 Score=59.47 Aligned_cols=104 Identities=18% Similarity=0.254 Sum_probs=55.4
Q ss_pred CCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcC-CCCCcEEEeCCCCCCC---cccccCCCCCcE
Q 041360 245 PNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGR-LFNLQTLCLGGCRLKD---IAIVGQLKKLEI 320 (561)
Q Consensus 245 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~-L~~L~~L~l~~~~l~~---p~~i~~L~~L~~ 320 (561)
.....++++.+. +..++. |..++.|..|.+.+|.|..+-+.+.. +++|+.|.|.+|.+.+ ...+..+++|+.
T Consensus 42 d~~d~iDLtdNd--l~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~ 117 (233)
T KOG1644|consen 42 DQFDAIDLTDND--LRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY 117 (233)
T ss_pred cccceecccccc--hhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence 344556666665 444443 45666666666666666665444443 3456666666666544 344445556666
Q ss_pred EEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccC
Q 041360 321 LSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGD 362 (561)
Q Consensus 321 L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~ 362 (561)
|.+-+|.+...+. - -..++.++++|+.||++.
T Consensus 118 Ltll~Npv~~k~~-------Y---R~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 118 LTLLGNPVEHKKN-------Y---RLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eeecCCchhcccC-------c---eeEEEEecCcceEeehhh
Confidence 6655554332210 0 012255666666666554
No 63
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.03 E-value=0.00081 Score=61.92 Aligned_cols=246 Identities=15% Similarity=0.116 Sum_probs=114.9
Q ss_pred CCCccEEEeeccCCCCcc----ccHHHHcCCCCccEEEecCCCCC----C-------CchhhcCCCCCcEEEeCCCCCCC
Q 041360 244 CPNLELFLLFRKGYGSMQ----ISDLFFEGTEEVKVLSLTGVRFS----S-------LPSSLGRLFNLQTLCLGGCRLKD 308 (561)
Q Consensus 244 ~~~L~~L~l~~~~~~~~~----~~~~~~~~l~~Lr~L~l~~~~i~----~-------lp~~i~~L~~L~~L~l~~~~l~~ 308 (561)
+..+..++++||. +.. .....+.+-++|++.++++.-.. + +.+.+-++++|+..+|+.|-+..
T Consensus 29 ~d~~~evdLSGNt--igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~ 106 (388)
T COG5238 29 MDELVEVDLSGNT--IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGS 106 (388)
T ss_pred hcceeEEeccCCc--ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCc
Confidence 5667777777775 221 11222355667777777654211 1 22344566777777777775433
Q ss_pred --c----ccccCCCCCcEEEccCCcCcccCh-hhhc-cccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHh
Q 041360 309 --I----AIVGQLKKLEILSFRDSYIEELPH-EIGQ-LTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAE 380 (561)
Q Consensus 309 --p----~~i~~L~~L~~L~l~~~~~~~lp~-~i~~-L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 380 (561)
| .-|.+-..|.||.+++|.+..+.. .|++ |.+|...-. ...-+.|+......|..... +.......
T Consensus 107 ~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKK--aa~kp~Le~vicgrNRleng----s~~~~a~~ 180 (388)
T COG5238 107 EFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKK--AADKPKLEVVICGRNRLENG----SKELSAAL 180 (388)
T ss_pred ccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhh--hccCCCceEEEeccchhccC----cHHHHHHH
Confidence 3 334555667777776665443321 1221 111111100 23344455555444432100 01111222
Q ss_pred hcCCCCCcEEEEeeccCcccC--c-----ccccccccEEEEEeccccccCCCCccccceEEEecCCccc----hhhhhhh
Q 041360 381 LKGLSKLTTLEIQVRDAQILP--Q-----DLVLVELQRYKICIGEAWRMWGVTSEISRLVRLHGLENVS----TLLENYG 449 (561)
Q Consensus 381 l~~l~~L~~L~l~~~~~~~~~--~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~----~~~~~~~ 449 (561)
+..-.+|+.+.+..|.+..-. . ...+++|+.|++ .+++. +......
T Consensus 181 l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDl-----------------------qDNtft~~gS~~La~a 237 (388)
T COG5238 181 LESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDL-----------------------QDNTFTLEGSRYLADA 237 (388)
T ss_pred HHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeec-----------------------cccchhhhhHHHHHHH
Confidence 333345555566555543110 0 013344554444 22221 1122222
Q ss_pred HHHhhccccceeecccc----CcccccccccCCCCCCCccEEEEecCCccchhhcc--cCcccCCcCcccccccccccc
Q 041360 450 MKMLLKEAEEIHLNELK----GVQNAVHELDDGEGFPRLKHLRVESCSEILHIVGS--VGRVRRKVFPLLESLSLKKAS 522 (561)
Q Consensus 450 ~~~ll~~L~~L~l~~~~----~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~--~~~~~~~~~~~L~~L~l~~c~ 522 (561)
+..+ +.|..|++.+|- +.+.+...|. ..-+|+|..|...+...-..+... ...+..+++|-|..|.+.+..
T Consensus 238 l~~W-~~lrEL~lnDClls~~G~~~v~~~f~-e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 238 LCEW-NLLRELRLNDCLLSNEGVKSVLRRFN-EKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred hccc-chhhhccccchhhccccHHHHHHHhh-hhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence 2333 566777777763 3333333332 334778888877764322222211 112366788888888887654
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=0.00011 Score=67.64 Aligned_cols=80 Identities=25% Similarity=0.264 Sum_probs=64.5
Q ss_pred CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeCCCCCCC---cccccCCCCCc
Q 041360 243 QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLGGCRLKD---IAIVGQLKKLE 319 (561)
Q Consensus 243 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~---p~~i~~L~~L~ 319 (561)
++.+.+.|++.||+ +..+. +..+|+.|.||.|+-|.|+++-+ +..+.+|+.|.|+.|.|.. ...+.++++|+
T Consensus 17 dl~~vkKLNcwg~~--L~DIs--ic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 17 DLENVKKLNCWGCG--LDDIS--ICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HHHHhhhhcccCCC--ccHHH--HHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 35567778888887 55553 35799999999999999988844 7889999999999998877 57788899999
Q ss_pred EEEccCCc
Q 041360 320 ILSFRDSY 327 (561)
Q Consensus 320 ~L~l~~~~ 327 (561)
+|-|..|.
T Consensus 92 ~LWL~ENP 99 (388)
T KOG2123|consen 92 TLWLDENP 99 (388)
T ss_pred hHhhccCC
Confidence 99887773
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.48 E-value=0.0012 Score=60.64 Aligned_cols=83 Identities=25% Similarity=0.378 Sum_probs=48.7
Q ss_pred CCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCC--CCCC-CchhhcCCCCCcEEEeCCCCCCC---cccccCCCC
Q 041360 244 CPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGV--RFSS-LPSSLGRLFNLQTLCLGGCRLKD---IAIVGQLKK 317 (561)
Q Consensus 244 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~--~i~~-lp~~i~~L~~L~~L~l~~~~l~~---p~~i~~L~~ 317 (561)
+..|+.|.+.++. ...+.. |..|++|+.|.++.| .+.. ++...-.+++|++|++++|+++. ...+.++.+
T Consensus 42 ~~~le~ls~~n~g--ltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 42 FVELELLSVINVG--LTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccchhhhhhhccc--eeeccc--CCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 4444444444443 323222 356677777777777 3332 54445555777777777777654 345556667
Q ss_pred CcEEEccCCcCcc
Q 041360 318 LEILSFRDSYIEE 330 (561)
Q Consensus 318 L~~L~l~~~~~~~ 330 (561)
|..|++.+|....
T Consensus 118 L~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 118 LKSLDLFNCSVTN 130 (260)
T ss_pred hhhhhcccCCccc
Confidence 7777777775443
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.25 E-value=0.0025 Score=58.66 Aligned_cols=109 Identities=26% Similarity=0.226 Sum_probs=76.2
Q ss_pred CCceEEEccCCCccccCCccCCCCccEEEeeccCC-CCccccHHHHcCCCCccEEEecCCCCCCC--chhhcCCCCCcEE
Q 041360 223 KGPIAISLPHRDIQELPERLQCPNLELFLLFRKGY-GSMQISDLFFEGTEEVKVLSLTGVRFSSL--PSSLGRLFNLQTL 299 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l--p~~i~~L~~L~~L 299 (561)
..+..+++.+..+..+.....+++|+.|.++.+.. ....++... ..+++|++|++++|.+.-+ -..+..+.+|..|
T Consensus 43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~L 121 (260)
T KOG2739|consen 43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSL 121 (260)
T ss_pred cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehh-hhCCceeEEeecCCccccccccchhhhhcchhhh
Confidence 45667777776666665555799999999999831 233333333 5679999999999987642 1235778899999
Q ss_pred EeCCCCCCC---c--ccccCCCCCcEEEccCCcCcccC
Q 041360 300 CLGGCRLKD---I--AIVGQLKKLEILSFRDSYIEELP 332 (561)
Q Consensus 300 ~l~~~~l~~---p--~~i~~L~~L~~L~l~~~~~~~lp 332 (561)
++..|.... . ..+..+++|..||-....-.+.|
T Consensus 122 dl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~ 159 (260)
T KOG2739|consen 122 DLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEAP 159 (260)
T ss_pred hcccCCccccccHHHHHHHHhhhhccccccccCCcccc
Confidence 999998544 2 45667888888877665444444
No 67
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.21 E-value=0.0024 Score=56.40 Aligned_cols=88 Identities=15% Similarity=0.111 Sum_probs=64.2
Q ss_pred cceEEEecCCccchhhhhhhHHHhhccccceeeccccCcccccccccCCCCCCCccEEEEecCCccchhhcccCcccCCc
Q 041360 430 SRLVRLHGLENVSTLLENYGMKMLLKEAEEIHLNELKGVQNAVHELDDGEGFPRLKHLRVESCSEILHIVGSVGRVRRKV 509 (561)
Q Consensus 430 ~~l~~L~~~~~~~~~~~~~~~~~ll~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~ 509 (561)
.....++-+++.+.......+..+ ++++.|.+.+|..+.+++.+.- .+.+++|+.|+|++|+++++-.- .....
T Consensus 101 ~~IeaVDAsds~I~~eGle~L~~l-~~i~~l~l~~ck~~dD~~L~~l-~~~~~~L~~L~lsgC~rIT~~GL----~~L~~ 174 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLEHLRDL-RSIKSLSLANCKYFDDWCLERL-GGLAPSLQDLDLSGCPRITDGGL----ACLLK 174 (221)
T ss_pred ceEEEEecCCchHHHHHHHHHhcc-chhhhheeccccchhhHHHHHh-cccccchheeeccCCCeechhHH----HHHHH
Confidence 445566666633222223344444 8889999999999988876654 45799999999999999986431 14578
Q ss_pred Cccccccccccccc
Q 041360 510 FPLLESLSLKKASF 523 (561)
Q Consensus 510 ~~~L~~L~l~~c~~ 523 (561)
|++|+.|.+.+.|.
T Consensus 175 lknLr~L~l~~l~~ 188 (221)
T KOG3864|consen 175 LKNLRRLHLYDLPY 188 (221)
T ss_pred hhhhHHHHhcCchh
Confidence 99999999999986
No 68
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.91 E-value=0.0029 Score=34.71 Aligned_cols=21 Identities=33% Similarity=0.646 Sum_probs=12.7
Q ss_pred CccEEEecCCCCCCCchhhcC
Q 041360 272 EVKVLSLTGVRFSSLPSSLGR 292 (561)
Q Consensus 272 ~Lr~L~l~~~~i~~lp~~i~~ 292 (561)
+|++||+++|.++.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666665543
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.89 E-value=0.0015 Score=68.81 Aligned_cols=82 Identities=26% Similarity=0.330 Sum_probs=39.7
Q ss_pred CCCccEEEeeccCCCCcccc-HHHHcCCCCccEEEecCC-C-CCC----CchhhcCCCCCcEEEeCCCC-CCC--ccccc
Q 041360 244 CPNLELFLLFRKGYGSMQIS-DLFFEGTEEVKVLSLTGV-R-FSS----LPSSLGRLFNLQTLCLGGCR-LKD--IAIVG 313 (561)
Q Consensus 244 ~~~L~~L~l~~~~~~~~~~~-~~~~~~l~~Lr~L~l~~~-~-i~~----lp~~i~~L~~L~~L~l~~~~-l~~--p~~i~ 313 (561)
++.|+.|.+.++. .+.... ..+...+++|+.|+++++ . +.. .+.....+.+|+.|++++|. +++ ...+.
T Consensus 187 ~~~L~~l~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 187 CPLLKRLSLSGCS-KITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred CchhhHhhhcccc-cCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 5566666666654 333211 222356666777776652 1 111 11223344556666666665 444 23333
Q ss_pred C-CCCCcEEEccCC
Q 041360 314 Q-LKKLEILSFRDS 326 (561)
Q Consensus 314 ~-L~~L~~L~l~~~ 326 (561)
. +++|++|.+.+|
T Consensus 266 ~~c~~L~~L~l~~c 279 (482)
T KOG1947|consen 266 SRCPNLETLSLSNC 279 (482)
T ss_pred hhCCCcceEccCCC
Confidence 2 555666655444
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.76 E-value=0.0034 Score=34.41 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=12.7
Q ss_pred CCcEEEccCCcCcccChhhhc
Q 041360 317 KLEILSFRDSYIEELPHEIGQ 337 (561)
Q Consensus 317 ~L~~L~l~~~~~~~lp~~i~~ 337 (561)
+|++||+++|++..+|.++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666655543
No 71
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.29 E-value=0.0014 Score=60.61 Aligned_cols=108 Identities=20% Similarity=0.287 Sum_probs=70.5
Q ss_pred cCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeCCCCCCCcccccCCCCCcEEEccCCcCcccChhhhccccccccCch
Q 041360 268 EGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLGGCRLKDIAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPN 347 (561)
Q Consensus 268 ~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~ 347 (561)
+.+.+.+.|+..||++..+. -..+++.|++|.|+-|+|+....+..+++|++|+++.|.|..+-+ +.
T Consensus 16 sdl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldE-L~----------- 82 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDE-LE----------- 82 (388)
T ss_pred hHHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHH-HH-----------
Confidence 34567788888888876652 235778899999999988887778888899999998887765542 11
Q ss_pred hhcCCCCCcEEEccCCcccccccCCCcccchHhhcCCCCCcEEE
Q 041360 348 LISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLE 391 (561)
Q Consensus 348 ~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~ 391 (561)
-+.++++|+.|.+..|......+ .+.....+.-+++|++|+
T Consensus 83 YLknlpsLr~LWL~ENPCc~~ag---~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 83 YLKNLPSLRTLWLDENPCCGEAG---QNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred HHhcCchhhhHhhccCCcccccc---hhHHHHHHHHcccchhcc
Confidence 14566777777777665432221 111223455555555554
No 72
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=94.64 E-value=0.044 Score=50.91 Aligned_cols=164 Identities=15% Similarity=0.130 Sum_probs=90.1
Q ss_pred CCceEEEccCCCccc-----cCCcc-CCCCccEEEeeccCC--CCccccHH------HHcCCCCccEEEecCCCCCC-Cc
Q 041360 223 KGPIAISLPHRDIQE-----LPERL-QCPNLELFLLFRKGY--GSMQISDL------FFEGTEEVKVLSLTGVRFSS-LP 287 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~~--~~~~~~~~------~~~~l~~Lr~L~l~~~~i~~-lp 287 (561)
..+..+++++|.+.+ +...+ .-.+|+...++..-- .-..+++. .+-+|++|+..+||+|.+.. .|
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~ 109 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP 109 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence 566777777777632 22222 445666666654310 01112211 13578888888888887644 33
Q ss_pred ----hhhcCCCCCcEEEeCCCCCCC--ccc-------------ccCCCCCcEEEccCCcCcccChhhhccccccccCchh
Q 041360 288 ----SSLGRLFNLQTLCLGGCRLKD--IAI-------------VGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNL 348 (561)
Q Consensus 288 ----~~i~~L~~L~~L~l~~~~l~~--p~~-------------i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~ 348 (561)
+-|++...|..|.+.+|.+.- -.. ...-+.|++.+...|++..-|...+-..
T Consensus 110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~--------- 180 (388)
T COG5238 110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAAL--------- 180 (388)
T ss_pred hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHH---------
Confidence 346677788888888887543 122 2345678888888887776664432211
Q ss_pred hcCCCCCcEEEccCCcccccccCCCcccchHhhcCCCCCcEEEEeeccCc
Q 041360 349 ISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIQVRDAQ 398 (561)
Q Consensus 349 i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 398 (561)
+..=.+|.++.++.|.+.-.-. .--....+..+++|+.|+++-|-.+
T Consensus 181 l~sh~~lk~vki~qNgIrpegv---~~L~~~gl~y~~~LevLDlqDNtft 227 (388)
T COG5238 181 LESHENLKEVKIQQNGIRPEGV---TMLAFLGLFYSHSLEVLDLQDNTFT 227 (388)
T ss_pred HHhhcCceeEEeeecCcCcchh---HHHHHHHHHHhCcceeeeccccchh
Confidence 2222456666666664431110 0011233555667777777765443
No 73
>COG3903 Predicted ATPase [General function prediction only]
Probab=94.19 E-value=0.21 Score=49.55 Aligned_cols=186 Identities=21% Similarity=0.216 Sum_probs=121.6
Q ss_pred EEeeccchhhhcccCCcceEecCCCCHH-HHHHHHHHHhC----CCCCCCCchHHHHHHHHHcCCChHHHHHHHHHHcCC
Q 041360 2 ILTSRNRDLLERDMNSQKNFLIEVLSKE-EALQLFENILG----DSTKTSTIQPIADEIVKRCGGLPVAVTTVANALKSK 76 (561)
Q Consensus 2 lvTTR~~~va~~~~~~~~~~~l~~L~~~-~a~~Lf~~~~~----~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~ 76 (561)
+.|+|.... ......+.+.+|+.- ++.++|.-.+. ...........+..|.++..|.|+||..+++..+..
T Consensus 121 ~atsre~~l----~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl 196 (414)
T COG3903 121 LATSREAIL----VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSL 196 (414)
T ss_pred HHHhHhhhc----ccccccccCCccccCCchhHHHHHHHHHhccceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhc
Confidence 345555433 344567888888865 79999988874 333344446788999999999999999999999977
Q ss_pred CHHHHHHHHHH----HhhCCCCCCCCchhhHHHHHHHHHHhcCChHHHHHHHhhcccCCCcccCHHHHHHHHhhcCcccc
Q 041360 77 SLDIWKDALSQ----LRSSNPREIDGMDKNVYTSIELSYNLLASKEAKSLFRLCGLYNEGHAIQVASLLRYGMGWGLFKN 152 (561)
Q Consensus 77 ~~~~w~~~~~~----l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~~~~~~l~~~w~a~g~~~~ 152 (561)
...+.-..++. +... .+......+..+..+.+||.-|... .+.-|--++.|...+.... ..|.+-|-.
T Consensus 197 ~~~~i~~~L~drf~ll~~~-~r~a~~~~qtl~asl~ws~~lLtgw-e~~~~~rLa~~~g~f~~~l----~~~~a~g~~-- 268 (414)
T COG3903 197 SPDEIAAGLRDRFRLLTGG-ARLAVLRQQTLRASLDWSYALLTGW-ERALFGRLAVFVGGFDLGL----ALAVAAGAD-- 268 (414)
T ss_pred CHHHHHHHHhhHHHHHhcc-cccchhHHHhccchhhhhhHhhhhH-HHHHhcchhhhhhhhcccH----HHHHhcCCc--
Confidence 55554433332 2111 2222234778899999999999987 8999999999987654442 234443321
Q ss_pred cccHHHHHHHHHHHHHHHHHcCccccc--CCCCceehhHHHHHHHHHHhhcC
Q 041360 153 VYTLEEARSRVHRLIDNLKSSCLLLDG--DGKDEVKMHDVIHVVAVSIATEE 202 (561)
Q Consensus 153 ~~~~~~~~~~~~~~i~~L~~~sll~~~--~~~~~~~mh~lv~~~~~~~~~~e 202 (561)
.+...-.....+..+++++++... .....|+.-+.+|.|+.....+.
T Consensus 269 ---~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r~ 317 (414)
T COG3903 269 ---VDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHRS 317 (414)
T ss_pred ---cccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 101111222344557888888533 33456777888888887776653
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.18 E-value=0.032 Score=28.28 Aligned_cols=16 Identities=25% Similarity=0.557 Sum_probs=7.0
Q ss_pred CCcEEEccCCcCcccC
Q 041360 317 KLEILSFRDSYIEELP 332 (561)
Q Consensus 317 ~L~~L~l~~~~~~~lp 332 (561)
+|++|++++|++..+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666555544
No 75
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.05 E-value=0.036 Score=28.12 Aligned_cols=16 Identities=38% Similarity=0.742 Sum_probs=6.6
Q ss_pred CccEEEecCCCCCCCc
Q 041360 272 EVKVLSLTGVRFSSLP 287 (561)
Q Consensus 272 ~Lr~L~l~~~~i~~lp 287 (561)
+|+.|++++|.++.+|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555555444
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=91.57 E-value=0.36 Score=40.27 Aligned_cols=78 Identities=15% Similarity=0.266 Sum_probs=38.9
Q ss_pred CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCch-hhcCCCCCcEEEeCCCCCCC--cccccCCCCCc
Q 041360 243 QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPS-SLGRLFNLQTLCLGGCRLKD--IAIVGQLKKLE 319 (561)
Q Consensus 243 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~--p~~i~~L~~L~ 319 (561)
.+++|+.+.+.. . +..++...|..+..|+.+.+.++ +..++. .+..+.+|+++.+.. .+.. ...+..+.+|+
T Consensus 10 ~~~~l~~i~~~~-~--~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 10 NCSNLESITFPN-T--IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp T-TT--EEEETS-T----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred CCCCCCEEEECC-C--eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 455666666653 2 45566666677777777777664 555543 455555677777754 3333 24555666777
Q ss_pred EEEccC
Q 041360 320 ILSFRD 325 (561)
Q Consensus 320 ~L~l~~ 325 (561)
.+++..
T Consensus 85 ~i~~~~ 90 (129)
T PF13306_consen 85 NIDIPS 90 (129)
T ss_dssp EEEETT
T ss_pred ccccCc
Confidence 776644
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=90.88 E-value=0.23 Score=28.28 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=16.6
Q ss_pred CCCCcEEEccCCcCcccChhh
Q 041360 315 LKKLEILSFRDSYIEELPHEI 335 (561)
Q Consensus 315 L~~L~~L~l~~~~~~~lp~~i 335 (561)
|.+|++|++++|.+..+|.++
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467888888888888888764
No 78
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=90.88 E-value=0.23 Score=28.28 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=16.6
Q ss_pred CCCCcEEEccCCcCcccChhh
Q 041360 315 LKKLEILSFRDSYIEELPHEI 335 (561)
Q Consensus 315 L~~L~~L~l~~~~~~~lp~~i 335 (561)
|.+|++|++++|.+..+|.++
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 467888888888888888764
No 79
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=90.36 E-value=8.7 Score=38.12 Aligned_cols=136 Identities=11% Similarity=0.073 Sum_probs=78.4
Q ss_pred cceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHcCCChHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCCC
Q 041360 18 QKNFLIEVLSKEEALQLFENILGDSTKTSTIQPIADEIVKRCGGLPVAVTTVANALKSKSLDIWKDALSQLRSSNPREID 97 (561)
Q Consensus 18 ~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~w~~~~~~l~~~~~~~~~ 97 (561)
...+++++++.++..+++.+.+......-+ ++.+..|++.|+|.|-.+..+...+ ..|....+ . ..+.
T Consensus 172 ~~~~~l~~~~~~e~~~il~~~~~~~~~~~~-~~~~~~ia~~~~G~pR~a~~~l~~~-----~~~a~~~~----~--~~I~ 239 (328)
T PRK00080 172 GIVQRLEFYTVEELEKIVKRSARILGVEID-EEGALEIARRSRGTPRIANRLLRRV-----RDFAQVKG----D--GVIT 239 (328)
T ss_pred CeeeecCCCCHHHHHHHHHHHHHHcCCCcC-HHHHHHHHHHcCCCchHHHHHHHHH-----HHHHHHcC----C--CCCC
Confidence 357899999999999999999863322222 4779999999999995444444322 12221110 0 0110
Q ss_pred -CchhhHHHHHHHHHHhcCChHHHHHHH-hhcccCCCcccCHHHHHHHHhhcCcccccccHHHHHHHHHHHHH-HHHHcC
Q 041360 98 -GMDKNVYTSIELSYNLLASKEAKSLFR-LCGLYNEGHAIQVASLLRYGMGWGLFKNVYTLEEARSRVHRLID-NLKSSC 174 (561)
Q Consensus 98 -~~~~~~~~~l~~sy~~L~~~~~k~cfl-~~s~fp~~~~~~~~~l~~~w~a~g~~~~~~~~~~~~~~~~~~i~-~L~~~s 174 (561)
..-......+...+..|++. .+..+. ....|+.+ .+..+.+....- .+...++ +.++ .|++.+
T Consensus 240 ~~~v~~~l~~~~~~~~~l~~~-~~~~l~~~~~~~~~~-~~~~~~~a~~lg--------~~~~~~~----~~~e~~Li~~~ 305 (328)
T PRK00080 240 KEIADKALDMLGVDELGLDEM-DRKYLRTIIEKFGGG-PVGLDTLAAALG--------EERDTIE----DVYEPYLIQQG 305 (328)
T ss_pred HHHHHHHHHHhCCCcCCCCHH-HHHHHHHHHHHcCCC-ceeHHHHHHHHC--------CCcchHH----HHhhHHHHHcC
Confidence 11222334445556777765 566654 55666655 566666654431 1122222 3455 688899
Q ss_pred ccccc
Q 041360 175 LLLDG 179 (561)
Q Consensus 175 ll~~~ 179 (561)
+++..
T Consensus 306 li~~~ 310 (328)
T PRK00080 306 FIQRT 310 (328)
T ss_pred CcccC
Confidence 99754
No 80
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=90.28 E-value=8.9 Score=37.53 Aligned_cols=136 Identities=15% Similarity=0.121 Sum_probs=74.2
Q ss_pred cceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHcCCChHHHHHHHHHHcCCCHHHHHHHHHHHhhCCCCCC-
Q 041360 18 QKNFLIEVLSKEEALQLFENILGDSTKTSTIQPIADEIVKRCGGLPVAVTTVANALKSKSLDIWKDALSQLRSSNPREI- 96 (561)
Q Consensus 18 ~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~~w~~~~~~l~~~~~~~~- 96 (561)
...+++++++.++..+++.+.+......-+ ++.+..|++.|+|.|-.+..++..+ |.... ..... .+
T Consensus 151 ~~~~~l~~l~~~e~~~il~~~~~~~~~~~~-~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~-~~~~~---~it 218 (305)
T TIGR00635 151 GIILRLEFYTVEELAEIVSRSAGLLNVEIE-PEAALEIARRSRGTPRIANRLLRRV-------RDFAQ-VRGQK---IIN 218 (305)
T ss_pred ceEEEeCCCCHHHHHHHHHHHHHHhCCCcC-HHHHHHHHHHhCCCcchHHHHHHHH-------HHHHH-HcCCC---CcC
Confidence 357899999999999999998863222212 5778899999999996655444432 11110 00000 00
Q ss_pred CCchhhHHHHHHHHHHhcCChHHHHHHH-hhcccCCCcccCHHHHHHHHhhcCcccccccHHHHHHHHHHHHH-HHHHcC
Q 041360 97 DGMDKNVYTSIELSYNLLASKEAKSLFR-LCGLYNEGHAIQVASLLRYGMGWGLFKNVYTLEEARSRVHRLID-NLKSSC 174 (561)
Q Consensus 97 ~~~~~~~~~~l~~sy~~L~~~~~k~cfl-~~s~fp~~~~~~~~~l~~~w~a~g~~~~~~~~~~~~~~~~~~i~-~L~~~s 174 (561)
...-......+..+|..++.+ .+..+. ..+.+..+ .+....+.... |. +.. .....++ .|++++
T Consensus 219 ~~~v~~~l~~l~~~~~~l~~~-~~~~L~al~~~~~~~-~~~~~~ia~~l---g~-----~~~----~~~~~~e~~Li~~~ 284 (305)
T TIGR00635 219 RDIALKALEMLMIDELGLDEI-DRKLLSVLIEQFQGG-PVGLKTLAAAL---GE-----DAD----TIEDVYEPYLLQIG 284 (305)
T ss_pred HHHHHHHHHHhCCCCCCCCHH-HHHHHHHHHHHhCCC-cccHHHHHHHh---CC-----Ccc----hHHHhhhHHHHHcC
Confidence 001111222234456677765 555444 44555433 45555544432 11 112 2233566 588999
Q ss_pred ccccc
Q 041360 175 LLLDG 179 (561)
Q Consensus 175 ll~~~ 179 (561)
+++..
T Consensus 285 li~~~ 289 (305)
T TIGR00635 285 FLQRT 289 (305)
T ss_pred CcccC
Confidence 99754
No 81
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.94 E-value=0.048 Score=48.46 Aligned_cols=69 Identities=14% Similarity=0.027 Sum_probs=51.4
Q ss_pred CCCCCCccEEEEecCCccchhhcccCcccCCcCccccccccccccccccCCCCCCCCCCCCcccCCCccccc
Q 041360 478 GEGFPRLKHLRVESCSEILHIVGSVGRVRRKVFPLLESLSLKKASFVILHGQKPTAASKGPEREKPTTSLGF 549 (561)
Q Consensus 478 ~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~i~~c~~l 549 (561)
.+.+++++.|.+.+|..+.+|.-.. -.+..|+|+.|+|++||.-...|...+..|++|+.|.+..-+..
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~---l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l~~v 189 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLER---LGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDLPYV 189 (221)
T ss_pred HhccchhhhheeccccchhhHHHHH---hcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCchhh
Confidence 4568999999999999999886332 22488999999999999811123334677889999888776643
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.83 E-value=0.32 Score=27.63 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=14.1
Q ss_pred CCCccEEEecCCCCCCCchhh
Q 041360 270 TEEVKVLSLTGVRFSSLPSSL 290 (561)
Q Consensus 270 l~~Lr~L~l~~~~i~~lp~~i 290 (561)
+.+|++|+|++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356777777777777776643
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.83 E-value=0.32 Score=27.63 Aligned_cols=21 Identities=29% Similarity=0.461 Sum_probs=14.1
Q ss_pred CCCccEEEecCCCCCCCchhh
Q 041360 270 TEEVKVLSLTGVRFSSLPSSL 290 (561)
Q Consensus 270 l~~Lr~L~l~~~~i~~lp~~i 290 (561)
+.+|++|+|++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356777777777777776643
No 84
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=88.09 E-value=2 Score=35.68 Aligned_cols=102 Identities=14% Similarity=0.288 Sum_probs=58.2
Q ss_pred CCceEEEccCCCccccCCcc--CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCch-hhcCCCCCcEE
Q 041360 223 KGPIAISLPHRDIQELPERL--QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPS-SLGRLFNLQTL 299 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~-~i~~L~~L~~L 299 (561)
.+++.+.+.. .+..++... .+++|+.+.+... +..++...|.++..|+.+.+.+ .+..++. .+..+.+|+.+
T Consensus 12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~---~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i 86 (129)
T PF13306_consen 12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN---LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI 86 (129)
T ss_dssp TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST---TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred CCCCEEEECC-CeeEeChhhccccccccccccccc---ccccceeeeecccccccccccc-ccccccccccccccccccc
Confidence 3577777764 566666654 6778999998663 6677777789998999999976 6666654 55668999999
Q ss_pred EeCCCCCCC--cccccCCCCCcEEEccCCcCcccC
Q 041360 300 CLGGCRLKD--IAIVGQLKKLEILSFRDSYIEELP 332 (561)
Q Consensus 300 ~l~~~~l~~--p~~i~~L~~L~~L~l~~~~~~~lp 332 (561)
.+..+ +.. ...+.+. +|+.+.+.. .+..++
T Consensus 87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~ 118 (129)
T PF13306_consen 87 DIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIE 118 (129)
T ss_dssp EETTT--BEEHTTTTTT--T--EEE-TT-B-SS--
T ss_pred ccCcc-ccEEchhhhcCC-CceEEEECC-CccEEC
Confidence 99764 554 4667776 888888765 444443
No 85
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=87.64 E-value=0.2 Score=52.75 Aligned_cols=85 Identities=29% Similarity=0.380 Sum_probs=59.1
Q ss_pred CCCCccEEEeeccCCCCcccc---HHHHcCCCCccEEEecCCC-CCCC-chhhc-CCCCCcEEEeCCCC-CCC--c-ccc
Q 041360 243 QCPNLELFLLFRKGYGSMQIS---DLFFEGTEEVKVLSLTGVR-FSSL-PSSLG-RLFNLQTLCLGGCR-LKD--I-AIV 312 (561)
Q Consensus 243 ~~~~L~~L~l~~~~~~~~~~~---~~~~~~l~~Lr~L~l~~~~-i~~l-p~~i~-~L~~L~~L~l~~~~-l~~--p-~~i 312 (561)
.+++|+.|+++++.......+ ......+++|+.|+++++. ++.. -..+. .+++|++|.+.+|. ++. . ...
T Consensus 212 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~ 291 (482)
T KOG1947|consen 212 KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIA 291 (482)
T ss_pred hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHH
Confidence 789999999987310122111 2234677999999999987 5442 22333 37899999999898 666 3 555
Q ss_pred cCCCCCcEEEccCCc
Q 041360 313 GQLKKLEILSFRDSY 327 (561)
Q Consensus 313 ~~L~~L~~L~l~~~~ 327 (561)
.++++|++|++++|.
T Consensus 292 ~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 292 ERCPSLRELDLSGCH 306 (482)
T ss_pred HhcCcccEEeeecCc
Confidence 678889999999884
No 86
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=85.84 E-value=0.029 Score=50.81 Aligned_cols=79 Identities=10% Similarity=-0.032 Sum_probs=39.1
Q ss_pred CceEEEccCCCccccCCcc-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeC
Q 041360 224 GPIAISLPHRDIQELPERL-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLG 302 (561)
Q Consensus 224 ~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~ 302 (561)
.+..|+++.++.-.+...+ .+..+..|+++.+. +..+|.++ ++++.++.+++..|..+..|.+.+.+++++|+++.
T Consensus 43 r~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq--~~~~~~d~-~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k 119 (326)
T KOG0473|consen 43 RVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQ--IKFLPKDA-KQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQK 119 (326)
T ss_pred eeeeehhhhhHHHhhccchHHHHHHHHHhccHhh--HhhChhhH-HHHHHHHHHHhhccchhhCCccccccCCcchhhhc
Confidence 3444444444443333322 23344444555443 44445443 55555555555555555555555555555555555
Q ss_pred CCC
Q 041360 303 GCR 305 (561)
Q Consensus 303 ~~~ 305 (561)
++.
T Consensus 120 ~~~ 122 (326)
T KOG0473|consen 120 KTE 122 (326)
T ss_pred cCc
Confidence 554
No 87
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=84.02 E-value=0.032 Score=50.52 Aligned_cols=83 Identities=7% Similarity=-0.030 Sum_probs=69.8
Q ss_pred CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeCCCCCCC-cccccCCCCCcEE
Q 041360 243 QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLGGCRLKD-IAIVGQLKKLEIL 321 (561)
Q Consensus 243 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~-p~~i~~L~~L~~L 321 (561)
.+...++|+++.+. ...+...+ +.+..|..||++.+.+..+|...+.+..++.+++..|..+. |.+.+.+++++.+
T Consensus 40 ~~kr~tvld~~s~r--~vn~~~n~-s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNR--LVNLGKNF-SILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhH--HHhhccch-HHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchh
Confidence 56778888888886 55555554 77888999999999999999999999999999988888888 9999999999999
Q ss_pred EccCCcC
Q 041360 322 SFRDSYI 328 (561)
Q Consensus 322 ~l~~~~~ 328 (561)
+..+|.+
T Consensus 117 e~k~~~~ 123 (326)
T KOG0473|consen 117 EQKKTEF 123 (326)
T ss_pred hhccCcc
Confidence 9988763
No 88
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=81.71 E-value=8.1 Score=36.95 Aligned_cols=70 Identities=16% Similarity=0.241 Sum_probs=50.5
Q ss_pred ceEecCCCCHHHHHHHHHHHhC--CCC-CCCCchHHHHHHHHHcCCChHHHHHHHHHHc------CC---CHHHHHHHHH
Q 041360 19 KNFLIEVLSKEEALQLFENILG--DST-KTSTIQPIADEIVKRCGGLPVAVTTVANALK------SK---SLDIWKDALS 86 (561)
Q Consensus 19 ~~~~l~~L~~~~a~~Lf~~~~~--~~~-~~~~~~~~~~~i~~~c~glPLai~~~g~~L~------~~---~~~~w~~~~~ 86 (561)
..+++++++.+|..+++...+. +.. ...=..+..+.|++.++|.|..|..++..+- ++ +.+.++.+..
T Consensus 185 ~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~ 264 (269)
T TIGR03015 185 ASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEKREIGGEEVREVIA 264 (269)
T ss_pred eeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 4678999999999999988764 111 1112257899999999999999999888772 11 5555655555
Q ss_pred HH
Q 041360 87 QL 88 (561)
Q Consensus 87 ~l 88 (561)
.+
T Consensus 265 ~~ 266 (269)
T TIGR03015 265 EI 266 (269)
T ss_pred Hh
Confidence 43
No 89
>PRK06893 DNA replication initiation factor; Validated
Probab=79.71 E-value=6.2 Score=36.86 Aligned_cols=59 Identities=12% Similarity=0.125 Sum_probs=42.3
Q ss_pred hhhhcccCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHcCCChHHHHHH
Q 041360 9 DLLERDMNSQKNFLIEVLSKEEALQLFENILGDSTKTSTIQPIADEIVKRCGGLPVAVTTV 69 (561)
Q Consensus 9 ~va~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 69 (561)
+++. ......+++++++++++.++++++++......-+ +++..-|++++.|-.-++..+
T Consensus 145 ~L~s-Rl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~-~~v~~~L~~~~~~d~r~l~~~ 203 (229)
T PRK06893 145 DLAS-RLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELS-DEVANFLLKRLDRDMHTLFDA 203 (229)
T ss_pred hHHH-HHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHhccCCHHHHHHH
Confidence 5544 2455679999999999999999999973322222 578889999998766554433
No 90
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=76.54 E-value=29 Score=38.39 Aligned_cols=144 Identities=14% Similarity=0.144 Sum_probs=93.6
Q ss_pred CCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHcCCChHHHHHHHHHHcCC-CHHHHHHHHHHHhhCCCCCCCCchhhH
Q 041360 25 VLSKEEALQLFENILGDSTKTSTIQPIADEIVKRCGGLPVAVTTVANALKSK-SLDIWKDALSQLRSSNPREIDGMDKNV 103 (561)
Q Consensus 25 ~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~-~~~~w~~~~~~l~~~~~~~~~~~~~~~ 103 (561)
.++.+|+-++|....+..-+ ...+..+.+..+|.+-|+..++=.+++. +.+.--..+.. ..+.+
T Consensus 193 rf~~eE~~~fl~~~~~l~Ld----~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG-----------~~~~l 257 (894)
T COG2909 193 RFDTEEAAAFLNDRGSLPLD----AADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSG-----------AASHL 257 (894)
T ss_pred cCChHHHHHHHHHcCCCCCC----hHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccc-----------hHHHH
Confidence 57899999999987532212 3568889999999999999999888733 33222121110 01111
Q ss_pred HHHH-HHHHHhcCChHHHHHHHhhcccCCCcccCHHHHHHHHhhcCcccccccHHHHHHHHHHHHHHHHHcCcccc--cC
Q 041360 104 YTSI-ELSYNLLASKEAKSLFRLCGLYNEGHAIQVASLLRYGMGWGLFKNVYTLEEARSRVHRLIDNLKSSCLLLD--GD 180 (561)
Q Consensus 104 ~~~l-~~sy~~L~~~~~k~cfl~~s~fp~~~~~~~~~l~~~w~a~g~~~~~~~~~~~~~~~~~~i~~L~~~sll~~--~~ 180 (561)
.+-+ .--++.||++ +|..++-+|+++. |..+ |+.-.. .++.+..++++|.+++++.. .+
T Consensus 258 ~dYL~eeVld~Lp~~-l~~FLl~~svl~~---f~~e-L~~~Lt-------------g~~ng~amLe~L~~~gLFl~~Ldd 319 (894)
T COG2909 258 SDYLVEEVLDRLPPE-LRDFLLQTSVLSR---FNDE-LCNALT-------------GEENGQAMLEELERRGLFLQRLDD 319 (894)
T ss_pred HHHHHHHHHhcCCHH-HHHHHHHHHhHHH---hhHH-HHHHHh-------------cCCcHHHHHHHHHhCCCceeeecC
Confidence 1111 1236889996 9999999999863 3322 222211 12234558888989998752 24
Q ss_pred CCCceehhHHHHHHHHHHhhc
Q 041360 181 GKDEVKMHDVIHVVAVSIATE 201 (561)
Q Consensus 181 ~~~~~~mh~lv~~~~~~~~~~ 201 (561)
....|+.|.++.+|.+.....
T Consensus 320 ~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 320 EGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred CCceeehhHHHHHHHHhhhcc
Confidence 567799999999999887765
No 91
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=74.21 E-value=1.8 Score=24.58 Aligned_cols=16 Identities=31% Similarity=0.794 Sum_probs=11.0
Q ss_pred CCccEEEEecCCccch
Q 041360 482 PRLKHLRVESCSEILH 497 (561)
Q Consensus 482 ~~L~~L~l~~c~~l~~ 497 (561)
++|++|+|++|+++++
T Consensus 2 ~~L~~L~l~~C~~itD 17 (26)
T smart00367 2 PNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCEeCCCCCCCcCH
Confidence 5677777777776654
No 92
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=72.00 E-value=2.6 Score=23.98 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=13.2
Q ss_pred CCccEEEecCCCCCCCch
Q 041360 271 EEVKVLSLTGVRFSSLPS 288 (561)
Q Consensus 271 ~~Lr~L~l~~~~i~~lp~ 288 (561)
.+|++|++++|.++++|+
T Consensus 2 ~~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTSLPE 19 (26)
T ss_pred cccceeecCCCccccCcc
Confidence 357777888887777775
No 93
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=68.96 E-value=11 Score=34.84 Aligned_cols=50 Identities=24% Similarity=0.308 Sum_probs=31.8
Q ss_pred ceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHcCCChHHHHH
Q 041360 19 KNFLIEVLSKEEALQLFENILGDSTKTSTIQPIADEIVKRCGGLPVAVTT 68 (561)
Q Consensus 19 ~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 68 (561)
..+.+++++.+++++++...+.+...-+.-.+..++|...+||.|..|..
T Consensus 184 ~~~~l~~l~~~e~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 184 SHIELKPLSKEEAREFLKELFKELIKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp -EEEE----HHHHHHHHHHHHHCC------HHHHHHHHHHHTT-HHHHHH
T ss_pred ceEEEeeCCHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 45999999999999999997643311011256789999999999987753
No 94
>PRK09087 hypothetical protein; Validated
Probab=67.78 E-value=35 Score=31.72 Aligned_cols=72 Identities=13% Similarity=0.091 Sum_probs=49.4
Q ss_pred cCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHcCCChHHHHHHHHHHc------CC--CHHHHHHHHH
Q 041360 15 MNSQKNFLIEVLSKEEALQLFENILGDSTKTSTIQPIADEIVKRCGGLPVAVTTVANALK------SK--SLDIWKDALS 86 (561)
Q Consensus 15 ~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~------~~--~~~~w~~~~~ 86 (561)
.....+++++++++++-.+++++++......- -+++..-|++.+.|..-++..+-..|. ++ +....+.+++
T Consensus 142 l~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l-~~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~~~~~it~~~~~~~l~ 220 (226)
T PRK09087 142 LKAATVVEIGEPDDALLSQVIFKLFADRQLYV-DPHVVYYLVSRMERSLFAAQTIVDRLDRLALERKSRITRALAAEVLN 220 (226)
T ss_pred HhCCceeecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 45567999999999999999999985322111 157888899999887776664333331 22 5566666665
Q ss_pred H
Q 041360 87 Q 87 (561)
Q Consensus 87 ~ 87 (561)
.
T Consensus 221 ~ 221 (226)
T PRK09087 221 E 221 (226)
T ss_pred h
Confidence 4
No 95
>COG3899 Predicted ATPase [General function prediction only]
Probab=66.94 E-value=90 Score=35.52 Aligned_cols=119 Identities=14% Similarity=0.240 Sum_probs=87.2
Q ss_pred CCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHcCCChHHHHHHHHHHcCC-------CHHHHHHHHHHH
Q 041360 16 NSQKNFLIEVLSKEEALQLFENILGDSTKTSTIQPIADEIVKRCGGLPVAVTTVANALKSK-------SLDIWKDALSQL 88 (561)
Q Consensus 16 ~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~-------~~~~w~~~~~~l 88 (561)
.....+.+.||+..+...+.....+..... ..+....|++|-+|.|+-+.-+=..+... +...|..=..++
T Consensus 209 ~~i~~I~L~PL~~~d~~~lV~~~l~~~~~~--~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i 286 (849)
T COG3899 209 TNITTITLAPLSRADTNQLVAATLGCTKLL--PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASL 286 (849)
T ss_pred CceeEEecCcCchhhHHHHHHHHhCCcccc--cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhc
Confidence 444799999999999999999988743332 24789999999999999999888888742 334444333332
Q ss_pred hhCCCCCCCCchhhHHHHHHHHHHhcCChHHHHHHHhhcccCCCcccCHHHHHHHHh
Q 041360 89 RSSNPREIDGMDKNVYTSIELSYNLLASKEAKSLFRLCGLYNEGHAIQVASLLRYGM 145 (561)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~~~~~~l~~~w~ 145 (561)
... ....++...+..-.+.||.. .|......|++.. .|+...+...+-
T Consensus 287 ~~~------~~~~~vv~~l~~rl~kL~~~-t~~Vl~~AA~iG~--~F~l~~La~l~~ 334 (849)
T COG3899 287 GIL------ATTDAVVEFLAARLQKLPGT-TREVLKAAACIGN--RFDLDTLAALAE 334 (849)
T ss_pred CCc------hhhHHHHHHHHHHHhcCCHH-HHHHHHHHHHhCc--cCCHHHHHHHHh
Confidence 111 12333666788899999997 9999999999864 677777777654
No 96
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=66.04 E-value=4.9 Score=22.92 Aligned_cols=16 Identities=31% Similarity=0.463 Sum_probs=9.8
Q ss_pred CCCCcEEEccCCcCcc
Q 041360 315 LKKLEILSFRDSYIEE 330 (561)
Q Consensus 315 L~~L~~L~l~~~~~~~ 330 (561)
+.+|+.|++++|+|..
T Consensus 1 L~~L~~L~L~~NkI~~ 16 (26)
T smart00365 1 LTNLEELDLSQNKIKK 16 (26)
T ss_pred CCccCEEECCCCccce
Confidence 3466677776666543
No 97
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=60.13 E-value=5.6 Score=21.87 Aligned_cols=11 Identities=45% Similarity=0.525 Sum_probs=4.1
Q ss_pred CCcEEEeCCCC
Q 041360 295 NLQTLCLGGCR 305 (561)
Q Consensus 295 ~L~~L~l~~~~ 305 (561)
+|++|+|++|.
T Consensus 3 ~L~~L~l~~n~ 13 (24)
T PF13516_consen 3 NLETLDLSNNQ 13 (24)
T ss_dssp T-SEEE-TSSB
T ss_pred CCCEEEccCCc
Confidence 44444444444
No 98
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=54.21 E-value=11 Score=21.86 Aligned_cols=13 Identities=15% Similarity=0.391 Sum_probs=7.3
Q ss_pred CCccEEEecCCCC
Q 041360 271 EEVKVLSLTGVRF 283 (561)
Q Consensus 271 ~~Lr~L~l~~~~i 283 (561)
++|++|+|++|.+
T Consensus 2 ~~L~~LdL~~N~i 14 (28)
T smart00368 2 PSLRELDLSNNKL 14 (28)
T ss_pred CccCEEECCCCCC
Confidence 3456666666554
No 99
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=46.98 E-value=3.2e+02 Score=27.63 Aligned_cols=137 Identities=11% Similarity=0.115 Sum_probs=74.0
Q ss_pred ceEecCCCCHHHHHHHHHHHhCCC-CCCCCchHHHHHHHHH----cCCChHHHHHHHHHH--c---CC---CHHHHHHHH
Q 041360 19 KNFLIEVLSKEEALQLFENILGDS-TKTSTIQPIADEIVKR----CGGLPVAVTTVANAL--K---SK---SLDIWKDAL 85 (561)
Q Consensus 19 ~~~~l~~L~~~~a~~Lf~~~~~~~-~~~~~~~~~~~~i~~~----c~glPLai~~~g~~L--~---~~---~~~~w~~~~ 85 (561)
..+.+++++.++..+++...+... ....--.++++.++++ .|..+.|+..+-.+. + +. +.+.+..+.
T Consensus 200 ~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~ 279 (394)
T PRK00411 200 EEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAY 279 (394)
T ss_pred ceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Confidence 467899999999999999887311 0100112344444444 455888877765432 1 11 566666666
Q ss_pred HHHhhCCCCCCCCchhhHHHHHHHHHHhcCChHHHHHHHh-hccc-C-CCcccCHHHHHHHH--hhc--CcccccccHHH
Q 041360 86 SQLRSSNPREIDGMDKNVYTSIELSYNLLASKEAKSLFRL-CGLY-N-EGHAIQVASLLRYG--MGW--GLFKNVYTLEE 158 (561)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~-~s~f-p-~~~~~~~~~l~~~w--~a~--g~~~~~~~~~~ 158 (561)
+... .....-.+..||.+ ++.+++ ++.. . +...+....+.... +++ |.-+ -
T Consensus 280 ~~~~--------------~~~~~~~~~~L~~~--~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~------~ 337 (394)
T PRK00411 280 EKSE--------------IVHLSEVLRTLPLH--EKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEP------R 337 (394)
T ss_pred HHHH--------------HHHHHHHHhcCCHH--HHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCc------C
Confidence 6541 22334467899975 444443 2222 1 11234444444322 121 1110 0
Q ss_pred HHHHHHHHHHHHHHcCccc
Q 041360 159 ARSRVHRLIDNLKSSCLLL 177 (561)
Q Consensus 159 ~~~~~~~~i~~L~~~sll~ 177 (561)
....+.+++..|.+.+++.
T Consensus 338 ~~~~~~~~l~~L~~~glI~ 356 (394)
T PRK00411 338 THTRFYEYINKLDMLGIIN 356 (394)
T ss_pred cHHHHHHHHHHHHhcCCeE
Confidence 2345566888888888886
No 100
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=34.61 E-value=1.4e+02 Score=27.45 Aligned_cols=52 Identities=13% Similarity=0.102 Sum_probs=37.1
Q ss_pred cceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHcCCChHHHHHHH
Q 041360 18 QKNFLIEVLSKEEALQLFENILGDSTKTSTIQPIADEIVKRCGGLPVAVTTVA 70 (561)
Q Consensus 18 ~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g 70 (561)
...+++.++++++-..++.+.+......- -+++.+.+++.++|.|..+..+-
T Consensus 151 ~~~i~l~~l~~~e~~~~l~~~~~~~~~~~-~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 151 GLVFQLPPLSDEEKIAALQSRAARRGLQL-PDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred CeeEecCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHhccCCHHHHHHHH
Confidence 46899999999999999987653211111 14667888888999887765553
No 101
>PRK08084 DNA replication initiation factor; Provisional
Probab=34.61 E-value=1.4e+02 Score=27.92 Aligned_cols=53 Identities=15% Similarity=0.068 Sum_probs=37.8
Q ss_pred cCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHcCCChHHHHH
Q 041360 15 MNSQKNFLIEVLSKEEALQLFENILGDSTKTSTIQPIADEIVKRCGGLPVAVTT 68 (561)
Q Consensus 15 ~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 68 (561)
.....+++++++++++-.+++.+++...... --+++..-|++.+.|-.-++..
T Consensus 156 l~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~-l~~~v~~~L~~~~~~d~r~l~~ 208 (235)
T PRK08084 156 LDWGQIYKLQPLSDEEKLQALQLRARLRGFE-LPEDVGRFLLKRLDREMRTLFM 208 (235)
T ss_pred HhCCceeeecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHhhcCCHHHHHH
Confidence 4455799999999999999998877532111 1257888899998876554433
No 102
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=32.93 E-value=1.2e+02 Score=30.36 Aligned_cols=48 Identities=10% Similarity=0.173 Sum_probs=36.2
Q ss_pred ceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHcCCChHHHHHH
Q 041360 19 KNFLIEVLSKEEALQLFENILGDSTKTSTIQPIADEIVKRCGGLPVAVTTV 69 (561)
Q Consensus 19 ~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 69 (561)
..+++.+++.++..+.+.+...... --.+.+..+++.++|.|.....+
T Consensus 193 ~~i~l~pl~~~~~~~~L~~~~~~~~---~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 193 QPISLKPLDDDELKKALSHLGSSQG---SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred cEEEecCCCHHHHHHHHHHhhcccC---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 5999999999999999998532211 11456788999999999865543
No 103
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=31.99 E-value=2.7 Score=43.85 Aligned_cols=141 Identities=18% Similarity=0.230 Sum_probs=82.1
Q ss_pred CCccEEEeeccCC---CCccccHHHHcCCCCccEEEecCCCCCC-----Cchhhc----CCCCCcEEEeCCCCCCC----
Q 041360 245 PNLELFLLFRKGY---GSMQISDLFFEGTEEVKVLSLTGVRFSS-----LPSSLG----RLFNLQTLCLGGCRLKD---- 308 (561)
Q Consensus 245 ~~L~~L~l~~~~~---~~~~~~~~~~~~l~~Lr~L~l~~~~i~~-----lp~~i~----~L~~L~~L~l~~~~l~~---- 308 (561)
..+++|.+..|.. ....+...+ ....+++.++++.|.+.. ++..+. ...++++|.+.+|.++.
T Consensus 144 ~~l~~L~l~~c~l~~~g~~~l~~~L-~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~ 222 (478)
T KOG4308|consen 144 CLLQTLELVSCSLTSEGAAPLAAVL-EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCA 222 (478)
T ss_pred HHHHHHHhhcccccccchHHHHHHH-hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHH
Confidence 3445555555540 112233433 447788888888887532 233333 47788888888887654
Q ss_pred c--ccccCCCC-CcEEEccCCcCcccChhhhccccccccCchhhcCC-CCCcEEEccCCcccccccCCCcccchHhhcCC
Q 041360 309 I--AIVGQLKK-LEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKF-SQLEELYMGDSFSQWDKVEGGSNASLAELKGL 384 (561)
Q Consensus 309 p--~~i~~L~~-L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l 384 (561)
+ ..+....+ ++.|++..|.+... ++..+ .+. +..+ ..++++++..|.+..... ....+.+..+
T Consensus 223 ~l~~~l~~~~~~~~el~l~~n~l~d~--g~~~L------~~~-l~~~~~~l~~l~l~~nsi~~~~~----~~L~~~l~~~ 289 (478)
T KOG4308|consen 223 LLDEVLASGESLLRELDLASNKLGDV--GVEKL------LPC-LSVLSETLRVLDLSRNSITEKGV----RDLAEVLVSC 289 (478)
T ss_pred HHHHHHhccchhhHHHHHHhcCcchH--HHHHH------HHH-hcccchhhhhhhhhcCCccccch----HHHHHHHhhh
Confidence 1 34555555 66677777765433 11111 111 3444 567888888876643222 2344667777
Q ss_pred CCCcEEEEeeccCcc
Q 041360 385 SKLTTLEIQVRDAQI 399 (561)
Q Consensus 385 ~~L~~L~l~~~~~~~ 399 (561)
.+++.|.++.|.+..
T Consensus 290 ~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 290 RQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHhhcccCcccc
Confidence 788888888877654
No 104
>PRK08727 hypothetical protein; Validated
Probab=31.19 E-value=1.5e+02 Score=27.54 Aligned_cols=49 Identities=6% Similarity=-0.036 Sum_probs=35.3
Q ss_pred CcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHcCCChHHH
Q 041360 17 SQKNFLIEVLSKEEALQLFENILGDSTKTSTIQPIADEIVKRCGGLPVAV 66 (561)
Q Consensus 17 ~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 66 (561)
...++++++++.++-.+++.+++......-+ +++..-|++.++|-.-++
T Consensus 153 ~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~-~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 153 QCIRIGLPVLDDVARAAVLRERAQRRGLALD-EAAIDWLLTHGERELAGL 201 (233)
T ss_pred cCceEEecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHhCCCCHHHH
Confidence 3468999999999999999998753222222 477888889888644433
No 105
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=30.81 E-value=1.4e+02 Score=30.08 Aligned_cols=46 Identities=9% Similarity=0.073 Sum_probs=34.5
Q ss_pred ceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHcCCChHHHHHH
Q 041360 19 KNFLIEVLSKEEALQLFENILGDSTKTSTIQPIADEIVKRCGGLPVAVTTV 69 (561)
Q Consensus 19 ~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 69 (561)
..+++.+++.++..+++.+.... ...+....+++.++|.|.....+
T Consensus 193 ~~i~l~~l~~~~i~~~L~~~~~~-----~~~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 193 RKLRLRPLAPEDVIDALAAAGPD-----LPDDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred eEEECCCCCHHHHHHHHHHhccc-----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 58999999999999999886421 11233367899999999865544
No 106
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=30.12 E-value=4.9e+02 Score=25.76 Aligned_cols=52 Identities=12% Similarity=0.187 Sum_probs=37.8
Q ss_pred ceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHcCCChHHHHHHHH
Q 041360 19 KNFLIEVLSKEEALQLFENILGDSTKTSTIQPIADEIVKRCGGLPVAVTTVAN 71 (561)
Q Consensus 19 ~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~ 71 (561)
..+++.++++++..+.+.+.+......-+ ++.+..+++.++|-|..+...-.
T Consensus 169 ~~~~~~~~~~~~l~~~l~~~~~~~g~~i~-~~a~~~l~~~~~g~~~~a~~~le 220 (355)
T TIGR02397 169 QRFDFKRIPLEDIVERLKKILDKEGIKIE-DEALELIARAADGSLRDALSLLD 220 (355)
T ss_pred eEEEcCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCChHHHHHHHH
Confidence 57889999999999999987742221111 47788899999998876655443
No 107
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=28.82 E-value=1.3e+02 Score=31.96 Aligned_cols=65 Identities=15% Similarity=0.160 Sum_probs=43.6
Q ss_pred CEEeeccchhhhcccCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHcCCChHHH
Q 041360 1 MILTSRNRDLLERDMNSQKNFLIEVLSKEEALQLFENILGDSTKTSTIQPIADEIVKRCGGLPVAV 66 (561)
Q Consensus 1 IlvTTR~~~va~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai 66 (561)
|++||+...+......-...+++.+++.++..+.+.+.+......-+ .+....|++.++|.+--+
T Consensus 162 I~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie-~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 162 IFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTD-IEALRIIAYKSEGSARDA 226 (507)
T ss_pred EEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHH
Confidence 45677766654211112257999999999999999998863222222 466788999999976433
No 108
>PF14516 AAA_35: AAA-like domain
Probab=28.37 E-value=5.9e+02 Score=25.17 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=44.3
Q ss_pred CcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHcCCChHHHHHHHHHHcCC
Q 041360 17 SQKNFLIEVLSKEEALQLFENILGDSTKTSTIQPIADEIVKRCGGLPVAVTTVANALKSK 76 (561)
Q Consensus 17 ~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~ 76 (561)
....++|++++.+|..+|..++-... -.+..++|....||.|--+..++..+...
T Consensus 192 Ig~~i~L~~Ft~~ev~~L~~~~~~~~-----~~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 192 IGQPIELPDFTPEEVQELAQRYGLEF-----SQEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred cccceeCCCCCHHHHHHHHHhhhccC-----CHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 34589999999999999998874321 12448999999999999999999999753
No 109
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.76 E-value=2.5e+02 Score=28.25 Aligned_cols=48 Identities=15% Similarity=0.189 Sum_probs=35.3
Q ss_pred ceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHcCCChHHHH
Q 041360 19 KNFLIEVLSKEEALQLFENILGDSTKTSTIQPIADEIVKRCGGLPVAVT 67 (561)
Q Consensus 19 ~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~ 67 (561)
..+++.+++.++..+.+.+.+......-+ ++.+..|++.++|.|-.+.
T Consensus 171 ~~~~~~~l~~~el~~~L~~~~~~~g~~i~-~~al~~ia~~s~G~~R~al 218 (363)
T PRK14961 171 LQFKLKIISEEKIFNFLKYILIKESIDTD-EYALKLIAYHAHGSMRDAL 218 (363)
T ss_pred eEEeCCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHcCCCHHHHH
Confidence 58999999999999999887642221111 4677889999999876443
No 110
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=24.43 E-value=2.6e+02 Score=25.69 Aligned_cols=55 Identities=9% Similarity=0.129 Sum_probs=39.1
Q ss_pred cceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHcCCChHHHHHHHHHH
Q 041360 18 QKNFLIEVLSKEEALQLFENILGDSTKTSTIQPIADEIVKRCGGLPVAVTTVANAL 73 (561)
Q Consensus 18 ~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L 73 (561)
...+++++|++++-..++.+.+......-+ +++...+++.+.|.+..+..+-..+
T Consensus 149 ~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~-~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 149 GLVYELKPLSDADKIAALKAAAAERGLQLA-DEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred CeEEEecCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHhccCCHHHHHHHHHHH
Confidence 368999999998877777765532222212 4778888899999998876666554
No 111
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=24.24 E-value=4.7e+02 Score=26.22 Aligned_cols=44 Identities=11% Similarity=0.069 Sum_probs=31.3
Q ss_pred cceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHcCCCh
Q 041360 18 QKNFLIEVLSKEEALQLFENILGDSTKTSTIQPIADEIVKRCGGLP 63 (561)
Q Consensus 18 ~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glP 63 (561)
.+.++++.++.++..++|+.++......++ .....+++.+.|..
T Consensus 285 d~~i~v~~P~~~~r~~Il~~~~~~~~l~~~--~~~~~la~~t~g~s 328 (364)
T TIGR01242 285 DRIIEVPLPDFEGRLEILKIHTRKMKLAED--VDLEAIAKMTEGAS 328 (364)
T ss_pred ceEEEeCCcCHHHHHHHHHHHHhcCCCCcc--CCHHHHHHHcCCCC
Confidence 468999999999999999998864332222 12456777777754
No 112
>PF14050 Nudc_N: N-terminal conserved domain of Nudc.
Probab=22.23 E-value=1.5e+02 Score=21.05 Aligned_cols=29 Identities=24% Similarity=0.435 Sum_probs=25.7
Q ss_pred chHHHHHHHHHcCCChHHHHHHHHHHcCC
Q 041360 48 IQPIADEIVKRCGGLPVAVTTVANALKSK 76 (561)
Q Consensus 48 ~~~~~~~i~~~c~glPLai~~~g~~L~~~ 76 (561)
+..+.-.|++.|+|++=-+.++-+.|+++
T Consensus 3 ~D~~ll~iaq~~~~I~~~Ld~fF~FL~Rk 31 (62)
T PF14050_consen 3 FDNMLLSIAQQCGGIEDFLDTFFSFLRRK 31 (62)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcc
Confidence 35677789999999999999999999977
No 113
>PRK05642 DNA replication initiation factor; Validated
Probab=21.58 E-value=3.1e+02 Score=25.56 Aligned_cols=52 Identities=17% Similarity=0.095 Sum_probs=36.7
Q ss_pred CcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHcCCChHHHHHH
Q 041360 17 SQKNFLIEVLSKEEALQLFENILGDSTKTSTIQPIADEIVKRCGGLPVAVTTV 69 (561)
Q Consensus 17 ~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 69 (561)
...+++++++++++-.+++++++......-+ +++..-+++++.|-.-++..+
T Consensus 157 ~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~-~ev~~~L~~~~~~d~r~l~~~ 208 (234)
T PRK05642 157 LALVFQMRGLSDEDKLRALQLRASRRGLHLT-DEVGHFILTRGTRSMSALFDL 208 (234)
T ss_pred cCeeeecCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHhcCCCHHHHHHH
Confidence 3468999999999999999977753211111 578888888888866554433
Done!