Query 041360
Match_columns 561
No_of_seqs 260 out of 2677
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 10:27:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041360.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041360hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.9 2.7E-27 9.1E-32 250.8 4.8 188 1-203 268-472 (549)
2 4fmz_A Internalin; leucine ric 99.9 8.5E-22 2.9E-26 197.2 21.9 292 223-547 44-344 (347)
3 3o6n_A APL1; leucine-rich repe 99.9 1.8E-22 6.3E-27 205.4 17.0 293 223-547 45-350 (390)
4 1o6v_A Internalin A; bacterial 99.9 2.9E-21 1E-25 201.2 21.2 290 223-547 46-364 (466)
5 3oja_B Anopheles plasmodium-re 99.9 9.1E-22 3.1E-26 211.4 17.3 293 223-547 51-356 (597)
6 3sfz_A APAF-1, apoptotic pepti 99.9 1.5E-21 5.1E-26 228.1 19.1 186 1-202 260-452 (1249)
7 4eco_A Uncharacterized protein 99.9 5.1E-22 1.7E-26 214.6 14.1 315 223-547 81-547 (636)
8 3vq2_A TLR4, TOLL-like recepto 99.9 5.3E-21 1.8E-25 206.3 20.9 117 223-341 32-155 (606)
9 2id5_A Lingo-1, leucine rich r 99.9 7E-21 2.4E-25 199.1 20.3 289 223-546 32-330 (477)
10 4ecn_A Leucine-rich repeat pro 99.9 1.8E-21 6.2E-26 214.4 16.2 304 223-547 448-838 (876)
11 4eco_A Uncharacterized protein 99.9 2.3E-21 7.9E-26 209.5 15.8 304 223-547 206-598 (636)
12 1o6v_A Internalin A; bacterial 99.9 1.6E-20 5.3E-25 195.7 21.2 289 223-547 68-386 (466)
13 4ecn_A Leucine-rich repeat pro 99.9 4.2E-21 1.5E-25 211.5 17.1 271 233-522 435-764 (876)
14 4fmz_A Internalin; leucine ric 99.9 2.5E-20 8.7E-25 186.4 21.2 268 223-522 66-344 (347)
15 3o6n_A APL1; leucine-rich repe 99.9 5.5E-21 1.9E-25 194.5 15.7 276 239-547 39-329 (390)
16 3v47_A TOLL-like receptor 5B a 99.8 1E-20 3.4E-25 196.7 16.5 313 220-547 28-406 (455)
17 2z63_A TOLL-like receptor 4, v 99.8 2.9E-20 9.8E-25 199.0 19.9 117 223-341 28-151 (570)
18 3t6q_A CD180 antigen; protein- 99.8 3.4E-20 1.2E-24 200.0 20.2 311 223-547 33-436 (606)
19 1xku_A Decorin; proteoglycan, 99.8 5.8E-20 2E-24 182.4 20.0 290 224-546 32-329 (330)
20 2z7x_B TOLL-like receptor 1, v 99.8 1.2E-19 4.2E-24 191.8 23.2 104 223-330 21-129 (520)
21 2ft3_A Biglycan; proteoglycan, 99.8 2.2E-20 7.6E-25 185.6 15.6 291 224-547 34-331 (332)
22 3bz5_A Internalin-J, INLJ; leu 99.8 7.4E-20 2.5E-24 189.4 19.6 290 223-545 42-348 (457)
23 4fcg_A Uncharacterized protein 99.8 2.1E-20 7.1E-25 185.1 14.7 213 243-499 79-294 (328)
24 3oja_B Anopheles plasmodium-re 99.8 1.9E-20 6.5E-25 201.1 15.4 275 240-547 46-335 (597)
25 3rgz_A Protein brassinosteroid 99.8 2.4E-20 8.3E-25 206.2 16.5 301 224-547 179-525 (768)
26 2z81_A CD282 antigen, TOLL-lik 99.8 1.2E-19 4.1E-24 193.3 20.8 308 223-547 26-421 (549)
27 2z63_A TOLL-like receptor 4, v 99.8 6.6E-20 2.2E-24 196.2 18.3 115 223-339 52-173 (570)
28 3rgz_A Protein brassinosteroid 99.8 2.6E-20 9E-25 205.9 15.1 136 271-415 394-546 (768)
29 1vt4_I APAF-1 related killer D 99.8 1.6E-20 5.5E-25 202.6 12.7 160 1-195 268-436 (1221)
30 3t6q_A CD180 antigen; protein- 99.8 2.1E-19 7.3E-24 193.7 20.8 184 223-415 129-384 (606)
31 4fcg_A Uncharacterized protein 99.8 1.9E-20 6.5E-25 185.4 11.4 216 223-491 81-310 (328)
32 2z7x_B TOLL-like receptor 1, v 99.8 1.1E-19 3.8E-24 192.2 17.3 111 226-341 3-117 (520)
33 3vq2_A TLR4, TOLL-like recepto 99.8 4.1E-19 1.4E-23 191.5 21.8 182 225-415 13-212 (606)
34 1ogq_A PGIP-2, polygalacturona 99.8 7.3E-20 2.5E-24 180.1 12.9 241 223-523 50-303 (313)
35 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 2E-19 7E-24 191.9 17.3 104 223-330 52-160 (562)
36 2id5_A Lingo-1, leucine rich r 99.8 3.6E-19 1.2E-23 186.1 18.9 284 226-546 14-306 (477)
37 3v47_A TOLL-like receptor 5B a 99.8 2.9E-19 9.8E-24 185.7 17.8 299 226-547 13-382 (455)
38 2z81_A CD282 antigen, TOLL-lik 99.8 6.7E-20 2.3E-24 195.2 12.6 179 228-417 10-206 (549)
39 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1E-18 3.5E-23 186.5 21.8 137 224-365 32-181 (562)
40 1ziw_A TOLL-like receptor 3; i 99.8 1E-18 3.5E-23 191.1 20.5 141 223-365 25-183 (680)
41 3j0a_A TOLL-like receptor 5; m 99.8 5.7E-19 1.9E-23 197.2 18.3 144 220-365 22-186 (844)
42 1ziw_A TOLL-like receptor 3; i 99.8 3.6E-18 1.2E-22 186.6 21.6 109 223-333 49-162 (680)
43 4g8a_A TOLL-like receptor 4; l 99.8 2.7E-18 9.2E-23 186.0 20.1 117 223-341 52-175 (635)
44 1z6t_A APAF-1, apoptotic prote 99.8 1.7E-18 5.9E-23 185.8 18.0 182 1-200 260-450 (591)
45 1ogq_A PGIP-2, polygalacturona 99.8 3.9E-19 1.3E-23 174.8 11.6 245 245-551 50-306 (313)
46 3zyi_A Leucine-rich repeat-con 99.8 1.5E-18 5.2E-23 179.9 16.6 168 225-415 56-226 (452)
47 3zyj_A Leucine-rich repeat-con 99.8 1.8E-18 6.1E-23 178.8 16.5 168 225-415 45-215 (440)
48 2z80_A TOLL-like receptor 2, v 99.8 1.3E-18 4.4E-23 174.4 14.5 241 223-492 52-311 (353)
49 3bz5_A Internalin-J, INLJ; leu 99.8 4E-18 1.4E-22 176.4 17.7 248 243-523 40-298 (457)
50 1jl5_A Outer protein YOPM; leu 99.8 1.1E-17 3.7E-22 173.0 20.1 276 223-547 111-407 (454)
51 2z66_A Variable lymphocyte rec 99.8 2E-18 6.7E-23 169.5 12.7 155 223-400 28-190 (306)
52 2ft3_A Biglycan; proteoglycan, 99.8 7.1E-18 2.4E-22 167.5 16.3 255 223-522 54-331 (332)
53 3j0a_A TOLL-like receptor 5; m 99.8 2.7E-17 9.1E-22 183.7 22.4 299 226-547 7-373 (844)
54 3g06_A SSPH2 (leucine-rich rep 99.8 3.7E-17 1.3E-21 174.3 22.0 99 223-334 40-139 (622)
55 1xku_A Decorin; proteoglycan, 99.7 2.5E-17 8.7E-22 163.3 18.2 263 223-521 52-329 (330)
56 1ozn_A Reticulon 4 receptor; N 99.7 5E-18 1.7E-22 164.7 12.8 216 226-492 14-235 (285)
57 2z80_A TOLL-like receptor 2, v 99.7 4.3E-17 1.5E-21 163.3 17.5 168 227-416 35-207 (353)
58 3o53_A Protein LRIM1, AGAP0063 99.7 1.9E-18 6.5E-23 170.3 7.1 264 224-554 35-304 (317)
59 1ozn_A Reticulon 4 receptor; N 99.7 2.6E-17 8.7E-22 159.7 13.6 170 223-415 32-209 (285)
60 1jl5_A Outer protein YOPM; leu 99.7 2.6E-16 8.8E-21 162.6 21.6 270 223-547 91-368 (454)
61 3zyi_A Leucine-rich repeat-con 99.7 3.4E-17 1.2E-21 169.7 14.0 218 223-492 75-300 (452)
62 3zyj_A Leucine-rich repeat-con 99.7 4.1E-17 1.4E-21 168.6 14.4 218 223-492 64-289 (440)
63 2z66_A Variable lymphocyte rec 99.7 3.7E-17 1.2E-21 160.4 12.7 166 227-415 11-183 (306)
64 3g06_A SSPH2 (leucine-rich rep 99.7 4.7E-16 1.6E-20 165.8 18.6 161 223-415 61-229 (622)
65 4g8a_A TOLL-like receptor 4; l 99.7 1.3E-15 4.5E-20 164.8 19.5 135 228-365 36-185 (635)
66 2o6q_A Variable lymphocyte rec 99.7 9.7E-16 3.3E-20 147.2 16.4 169 223-414 37-212 (270)
67 1h6u_A Internalin H; cell adhe 99.7 2.1E-15 7.2E-20 147.7 18.4 176 223-416 41-226 (308)
68 1h6u_A Internalin H; cell adhe 99.7 5.4E-16 1.9E-20 151.9 14.2 195 243-499 39-233 (308)
69 1p9a_G Platelet glycoprotein I 99.7 9.4E-16 3.2E-20 148.7 15.6 167 223-414 10-179 (290)
70 3o53_A Protein LRIM1, AGAP0063 99.7 2.6E-16 8.8E-21 155.0 11.1 265 225-556 12-282 (317)
71 3oja_A Leucine-rich immune mol 99.6 2.1E-16 7.3E-21 164.8 9.3 234 224-522 35-273 (487)
72 2o6q_A Variable lymphocyte rec 99.6 3.4E-15 1.2E-19 143.4 16.1 153 223-398 61-218 (270)
73 1wwl_A Monocyte differentiatio 99.6 1.6E-16 5.4E-21 156.2 6.1 83 269-364 93-184 (312)
74 3m19_A Variable lymphocyte rec 99.6 3.5E-15 1.2E-19 141.6 15.2 169 223-415 14-187 (251)
75 2z62_A TOLL-like receptor 4, v 99.6 4.2E-15 1.4E-19 143.3 15.0 148 231-401 15-165 (276)
76 3rfs_A Internalin B, repeat mo 99.6 7.1E-15 2.4E-19 141.3 16.4 168 223-415 41-213 (272)
77 2z62_A TOLL-like receptor 4, v 99.6 2.6E-15 8.8E-20 144.8 13.1 173 223-416 28-209 (276)
78 1h6t_A Internalin B; cell adhe 99.6 1.5E-14 5E-19 140.4 17.6 165 223-417 46-210 (291)
79 2xwt_C Thyrotropin receptor; s 99.6 3.5E-15 1.2E-19 140.6 12.7 140 235-401 23-172 (239)
80 1z7x_W Ribonuclease inhibitor; 99.6 1.4E-16 4.7E-21 165.7 1.1 37 481-523 369-410 (461)
81 2xwt_C Thyrotropin receptor; s 99.6 4.8E-15 1.6E-19 139.6 11.5 168 223-414 31-212 (239)
82 4ay9_X Follicle-stimulating ho 99.6 5E-15 1.7E-19 147.9 11.5 165 227-414 13-184 (350)
83 1wwl_A Monocyte differentiatio 99.6 1.5E-14 5.3E-19 141.9 13.1 171 223-414 95-281 (312)
84 3m19_A Variable lymphocyte rec 99.6 3.6E-14 1.2E-18 134.6 15.1 154 223-399 35-193 (251)
85 3oja_A Leucine-rich immune mol 99.6 4E-15 1.4E-19 155.2 8.7 207 223-463 58-270 (487)
86 3rfs_A Internalin B, repeat mo 99.6 4E-14 1.4E-18 136.0 14.8 164 223-414 63-229 (272)
87 1p9a_G Platelet glycoprotein I 99.5 5.1E-14 1.7E-18 136.5 14.0 168 223-415 31-203 (290)
88 1m9s_A Internalin B; cell inva 99.5 4.8E-14 1.7E-18 150.1 14.8 163 223-415 43-205 (605)
89 1h6t_A Internalin B; cell adhe 99.5 2.3E-14 7.9E-19 139.0 11.3 143 243-415 44-186 (291)
90 4ezg_A Putative uncharacterize 99.5 6E-14 2E-18 127.8 13.0 147 223-398 44-194 (197)
91 2ast_B S-phase kinase-associat 99.5 2.5E-14 8.7E-19 142.0 10.3 219 223-492 47-282 (336)
92 2v9t_B SLIT homolog 2 protein 99.5 9.5E-14 3.3E-18 128.8 12.7 148 226-397 14-164 (220)
93 3e6j_A Variable lymphocyte rec 99.5 1.4E-13 4.9E-18 128.4 13.9 148 226-398 22-172 (229)
94 2v70_A SLIT-2, SLIT homolog 2 99.5 1.2E-13 4E-18 128.2 12.4 149 226-398 14-166 (220)
95 2ast_B S-phase kinase-associat 99.5 1.8E-14 6.2E-19 143.1 6.7 252 245-555 47-311 (336)
96 1xeu_A Internalin C; cellular 99.5 8.7E-14 3E-18 132.8 11.1 147 223-400 41-187 (263)
97 2ca6_A RAN GTPase-activating p 99.5 1.2E-14 4.2E-19 147.2 5.2 148 243-398 30-200 (386)
98 4ay9_X Follicle-stimulating ho 99.5 3E-13 1E-17 135.0 15.0 233 248-520 12-255 (350)
99 2o6s_A Variable lymphocyte rec 99.5 1.1E-13 3.6E-18 127.4 10.7 147 227-397 11-160 (208)
100 4ezg_A Putative uncharacterize 99.5 2.4E-13 8.2E-18 123.8 12.8 147 243-416 42-190 (197)
101 1xeu_A Internalin C; cellular 99.5 4.1E-13 1.4E-17 128.1 14.7 162 225-417 21-182 (263)
102 1z7x_W Ribonuclease inhibitor; 99.5 1.1E-14 3.6E-19 151.4 4.0 288 224-523 86-439 (461)
103 2o6s_A Variable lymphocyte rec 99.5 5.4E-13 1.8E-17 122.6 14.5 146 223-398 28-178 (208)
104 3e6j_A Variable lymphocyte rec 99.5 4.9E-13 1.7E-17 124.8 13.3 129 223-366 40-172 (229)
105 3ogk_B Coronatine-insensitive 99.5 8.1E-14 2.8E-18 149.6 8.9 305 223-547 164-524 (592)
106 1m9s_A Internalin B; cell inva 99.5 2.8E-13 9.4E-18 144.3 12.7 158 230-417 28-185 (605)
107 2v9t_B SLIT homolog 2 protein 99.4 6.3E-13 2.2E-17 123.2 13.0 129 223-366 32-165 (220)
108 2p1m_B Transport inhibitor res 99.4 9.5E-15 3.3E-19 156.9 0.6 61 481-548 455-518 (594)
109 4glp_A Monocyte differentiatio 99.4 2.9E-13 9.9E-18 132.7 10.6 176 223-415 91-280 (310)
110 3ogk_B Coronatine-insensitive 99.4 6.7E-13 2.3E-17 142.4 14.1 284 223-523 192-525 (592)
111 3goz_A Leucine-rich repeat-con 99.4 2E-13 7E-18 136.9 9.4 236 245-522 22-295 (362)
112 2ca6_A RAN GTPase-activating p 99.4 1.8E-13 6E-18 138.7 6.6 178 223-415 32-252 (386)
113 2v70_A SLIT-2, SLIT homolog 2 99.4 1.8E-12 6.1E-17 120.1 12.9 129 223-366 32-166 (220)
114 3cvr_A Invasion plasmid antige 99.4 1.8E-12 6E-17 136.6 14.2 185 223-453 59-253 (571)
115 2xot_A Amphoterin-induced prot 99.4 6.6E-13 2.2E-17 133.1 10.2 156 226-402 21-180 (361)
116 2xot_A Amphoterin-induced prot 99.4 1.6E-12 5.4E-17 130.3 12.3 156 223-398 39-202 (361)
117 2ell_A Acidic leucine-rich nuc 99.4 1.3E-12 4.5E-17 115.6 10.3 129 223-365 24-159 (168)
118 4glp_A Monocyte differentiatio 99.4 2.2E-13 7.7E-18 133.5 5.3 169 223-415 117-302 (310)
119 2ell_A Acidic leucine-rich nuc 99.4 1.4E-12 4.9E-17 115.3 9.7 140 243-403 22-165 (168)
120 2je0_A Acidic leucine-rich nuc 99.4 1.3E-12 4.4E-17 113.1 9.0 125 223-361 17-148 (149)
121 2wfh_A SLIT homolog 2 protein 99.4 5.8E-12 2E-16 114.0 12.9 124 226-366 13-139 (193)
122 3cvr_A Invasion plasmid antige 99.3 6.5E-12 2.2E-16 132.3 13.3 182 245-493 59-241 (571)
123 3goz_A Leucine-rich repeat-con 99.3 8.7E-13 3E-17 132.3 6.1 232 223-492 22-294 (362)
124 2p1m_B Transport inhibitor res 99.3 1.7E-12 5.8E-17 139.3 8.8 293 223-523 156-518 (594)
125 1w8a_A SLIT protein; signaling 99.3 6.5E-12 2.2E-16 113.7 11.2 125 226-366 11-139 (192)
126 2o6r_A Variable lymphocyte rec 99.3 1.3E-11 4.5E-16 110.1 13.0 125 226-366 10-137 (177)
127 1a9n_A U2A', U2A'; complex (nu 99.3 4.6E-12 1.6E-16 113.0 8.8 129 223-365 19-152 (176)
128 1a9n_A U2A', U2A'; complex (nu 99.3 3.2E-12 1.1E-16 114.0 6.1 138 239-398 13-153 (176)
129 2je0_A Acidic leucine-rich nuc 99.3 5.5E-12 1.9E-16 109.1 6.9 129 244-393 16-148 (149)
130 1w8a_A SLIT protein; signaling 99.3 1.1E-11 3.7E-16 112.2 9.1 125 248-398 11-139 (192)
131 2r9u_A Variable lymphocyte rec 99.2 2.3E-11 7.8E-16 108.0 10.3 113 226-341 15-130 (174)
132 2wfh_A SLIT homolog 2 protein 99.2 4.4E-11 1.5E-15 108.2 12.2 124 248-397 13-138 (193)
133 4b8c_D Glucose-repressible alc 99.2 1.4E-11 4.6E-16 134.6 9.2 111 223-336 173-290 (727)
134 1dce_A Protein (RAB geranylger 99.2 4.6E-11 1.6E-15 126.3 12.3 119 272-413 442-566 (567)
135 1dce_A Protein (RAB geranylger 99.2 4.6E-11 1.6E-15 126.3 11.1 107 245-369 441-549 (567)
136 4b8c_D Glucose-repressible alc 99.2 2.8E-11 9.6E-16 132.1 8.9 87 243-332 222-309 (727)
137 3g39_A Variable lymphocyte rec 99.2 1E-10 3.4E-15 103.5 10.3 111 225-338 11-124 (170)
138 2o6r_A Variable lymphocyte rec 99.1 1.9E-10 6.6E-15 102.4 10.6 113 223-337 28-145 (177)
139 1ds9_A Outer arm dynein; leuci 99.0 2E-11 7E-16 111.0 -0.4 107 243-365 46-152 (198)
140 3g39_A Variable lymphocyte rec 99.0 6.8E-10 2.3E-14 98.1 9.4 102 247-366 11-115 (170)
141 2r9u_A Variable lymphocyte rec 99.0 1.8E-09 6.1E-14 95.7 10.7 101 248-366 15-118 (174)
142 1ds9_A Outer arm dynein; leuci 98.9 9.3E-11 3.2E-15 106.6 -2.9 130 223-359 48-180 (198)
143 3sb4_A Hypothetical leucine ri 98.8 2.1E-08 7.2E-13 98.8 10.5 57 244-303 100-157 (329)
144 2ifg_A High affinity nerve gro 98.7 3.8E-08 1.3E-12 97.7 10.1 102 227-331 12-118 (347)
145 2ifg_A High affinity nerve gro 98.7 3.3E-08 1.1E-12 98.2 9.3 100 249-366 12-116 (347)
146 3sb4_A Hypothetical leucine ri 98.6 9.1E-08 3.1E-12 94.2 8.6 199 261-499 83-313 (329)
147 3un9_A NLR family member X1; l 98.5 9E-09 3.1E-13 102.9 0.0 163 223-399 72-253 (372)
148 3un9_A NLR family member X1; l 98.4 3E-08 1E-12 99.1 0.8 157 244-415 71-247 (372)
149 4fdw_A Leucine rich hypothetic 98.4 2.1E-06 7E-11 86.6 11.9 161 245-414 157-330 (401)
150 2ra8_A Uncharacterized protein 98.1 3E-06 1E-10 83.9 7.3 180 223-414 107-314 (362)
151 4fdw_A Leucine rich hypothetic 98.1 2.3E-05 8E-10 78.9 13.7 168 225-416 159-354 (401)
152 2ra8_A Uncharacterized protein 98.0 8.4E-06 2.9E-10 80.7 7.9 182 310-523 133-319 (362)
153 3e4g_A ATP synthase subunit S, 97.8 1.2E-05 4.2E-10 69.9 4.4 92 237-330 52-154 (176)
154 4fs7_A Uncharacterized protein 97.8 0.00031 1E-08 70.6 15.3 74 455-543 297-373 (394)
155 1io0_A Tropomodulin; LRR prote 97.8 1.5E-05 5E-10 71.0 4.9 118 267-397 32-163 (185)
156 3rw6_A Nuclear RNA export fact 97.7 2.8E-05 9.4E-10 73.0 5.3 86 268-360 167-258 (267)
157 3e4g_A ATP synthase subunit S, 97.7 4.4E-05 1.5E-09 66.4 5.7 83 271-366 61-152 (176)
158 1io0_A Tropomodulin; LRR prote 97.6 6E-05 2.1E-09 67.0 5.7 111 243-365 34-163 (185)
159 3rw6_A Nuclear RNA export fact 97.5 7.2E-05 2.5E-09 70.2 5.4 78 243-323 168-258 (267)
160 4fs7_A Uncharacterized protein 97.2 0.002 7E-08 64.5 12.4 54 479-543 294-350 (394)
161 2qen_A Walker-type ATPase; unk 96.8 0.019 6.6E-07 56.1 14.9 148 19-196 196-349 (350)
162 2fna_A Conserved hypothetical 96.6 0.024 8.1E-07 55.5 13.6 147 19-195 202-356 (357)
163 4gt6_A Cell surface protein; l 96.1 0.048 1.6E-06 54.4 12.8 74 247-324 66-145 (394)
164 4h09_A Hypothetical leucine ri 96.0 0.18 6E-06 49.8 16.1 53 244-301 45-98 (379)
165 4gt6_A Cell surface protein; l 95.8 0.13 4.5E-06 51.2 14.4 78 223-304 87-170 (394)
166 3rfe_A Platelet glycoprotein I 94.7 0.053 1.8E-06 44.5 6.0 50 275-326 12-65 (130)
167 1w5s_A Origin recognition comp 94.6 0.17 5.7E-06 50.6 10.9 138 20-179 209-371 (412)
168 1pgv_A TMD-1, tropomodulin TMD 94.5 0.043 1.5E-06 48.5 5.3 119 267-396 37-168 (197)
169 3rfe_A Platelet glycoprotein I 94.1 0.069 2.4E-06 43.8 5.3 53 249-306 12-67 (130)
170 4h09_A Hypothetical leucine ri 92.1 0.56 1.9E-05 46.2 9.7 124 243-393 215-341 (379)
171 1njg_A DNA polymerase III subu 89.7 0.55 1.9E-05 42.5 6.5 72 1-73 159-231 (250)
172 1hqc_A RUVB; extended AAA-ATPa 88.2 1.2 4E-05 42.7 7.9 54 19-73 161-214 (324)
173 1pgv_A TMD-1, tropomodulin TMD 86.6 0.61 2.1E-05 41.0 4.3 91 268-364 67-168 (197)
174 2v1u_A Cell division control p 82.5 18 0.0006 35.0 13.6 139 19-178 194-350 (387)
175 2qby_B CDC6 homolog 3, cell di 78.2 12 0.00041 36.3 10.6 137 20-178 191-338 (384)
176 2qby_A CDC6 homolog 1, cell di 75.5 21 0.00071 34.4 11.6 139 19-178 190-347 (386)
177 1fnn_A CDC6P, cell division co 68.7 58 0.002 31.3 13.0 139 19-178 186-350 (389)
178 2chg_A Replication factor C sm 65.5 9.1 0.00031 33.5 5.8 54 19-73 154-207 (226)
179 1sxj_B Activator 1 37 kDa subu 52.8 18 0.00063 33.9 5.8 52 19-71 159-211 (323)
180 1jr3_A DNA polymerase III subu 44.1 31 0.0011 33.1 6.0 52 19-71 171-222 (373)
181 3bos_A Putative DNA replicatio 34.6 78 0.0027 27.7 6.8 50 19-69 167-216 (242)
182 1iqp_A RFCS; clamp loader, ext 33.1 51 0.0017 30.7 5.4 55 19-74 162-216 (327)
183 4h7y_A Dual specificity protei 28.7 45 0.0015 27.6 3.4 81 73-168 8-88 (161)
184 2chq_A Replication factor C sm 28.2 1.2E+02 0.0041 27.9 7.2 53 19-72 154-206 (319)
185 1d2n_A N-ethylmaleimide-sensit 25.6 2.6E+02 0.0089 25.0 8.8 86 1-92 170-265 (272)
186 2vda_B Maltoporin; sugar trans 21.0 40 0.0014 17.9 1.1 17 59-75 8-24 (28)
187 1a5t_A Delta prime, HOLB; zinc 20.7 1.5E+02 0.0051 27.9 6.2 44 19-68 160-203 (334)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.93 E-value=2.7e-27 Score=250.84 Aligned_cols=188 Identities=13% Similarity=0.104 Sum_probs=141.7
Q ss_pred CEEeeccchhhhcccC-CcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHcCCChHHHHHHHHHHcCCCHH
Q 041360 1 MILTSRNRDLLERDMN-SQKNFLIEVLSKEEALQLFENILGDSTKTSTIQPIADEIVKRCGGLPVAVTTVANALKSKSLD 79 (561)
Q Consensus 1 IlvTTR~~~va~~~~~-~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~ 79 (561)
||||||++.|+.. ++ ..++|+|++|++++||+||.+++|....++++++++.+|+++|+|+||||+++|+.|+.++ +
T Consensus 268 ilvTTR~~~v~~~-~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w 345 (549)
T 2a5y_B 268 CLVTTRDVEISNA-ASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-F 345 (549)
T ss_dssp EEEEESBGGGGGG-CCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-H
T ss_pred EEEEcCCHHHHHH-cCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHHHHHhccch-H
Confidence 7999999999863 43 4478999999999999999999985544567788999999999999999999999998764 2
Q ss_pred HHHHHHHH-HhhCCCCCCCCchhhHHHHHHHHHHhcCChHHHHHHH-----------hhcccCCCcccCHHHHHHHHhhc
Q 041360 80 IWKDALSQ-LRSSNPREIDGMDKNVYTSIELSYNLLASKEAKSLFR-----------LCGLYNEGHAIQVASLLRYGMGW 147 (561)
Q Consensus 80 ~w~~~~~~-l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl-----------~~s~fp~~~~~~~~~l~~~w~a~ 147 (561)
+|...+.. +... ....+..++.+||+.||++ +|.||+ |||+||+++.++ +++|+|+
T Consensus 346 ~~~~~l~~~l~~~-------~~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~ 413 (549)
T 2a5y_B 346 EKMAQLNNKLESR-------GLVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCV 413 (549)
T ss_dssp HHHHHHHHHHHHH-------CSSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHH
T ss_pred HHHHHhHHHhhcc-------cHHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCCCCeee----eeeeeee
Confidence 33222222 2111 1245777888999999987 999999 999999999998 8899999
Q ss_pred --CcccccccHHHHHHHHHHHHHHHHHcCcccccC--CCCceehhHHHHHHHHHHhhcCc
Q 041360 148 --GLFKNVYTLEEARSRVHRLIDNLKSSCLLLDGD--GKDEVKMHDVIHVVAVSIATEEQ 203 (561)
Q Consensus 148 --g~~~~~~~~~~~~~~~~~~i~~L~~~sll~~~~--~~~~~~mh~lv~~~~~~~~~~e~ 203 (561)
||+.........++.+. ++++|+++||++... ...+|+|||++|++|+.++.+++
T Consensus 414 ~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~ 472 (549)
T 2a5y_B 414 IPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQT 472 (549)
T ss_dssp SCC-------CCCTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHH
T ss_pred ccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCCCceEEEeChHHHHHHHHHHHHHH
Confidence 99974321111222333 889999999998653 34579999999999998887654
No 2
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.89 E-value=8.5e-22 Score=197.21 Aligned_cols=292 Identities=15% Similarity=0.116 Sum_probs=198.8
Q ss_pred CCceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeC
Q 041360 223 KGPIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLG 302 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~ 302 (561)
++++++++.++.+..++....+++|++|+++++. +..++. ++++++|++|++++|.+..+| .+..+++|++|+++
T Consensus 44 ~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~--i~~~~~--~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~ 118 (347)
T 4fmz_A 44 ESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQ--ITDISP--LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLN 118 (347)
T ss_dssp TTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSC--CCCCGG--GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECT
T ss_pred ccccEEEEeCCccccchhhhhcCCccEEEccCCc--cccchh--hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECc
Confidence 5778888888888777654477888888888876 666666 578888888888888877765 57888888888888
Q ss_pred CCCCCCcccccCCCCCcEEEccCCcCcccChhhhccccccccC--------chhhcCCCCCcEEEccCCcccccccCCCc
Q 041360 303 GCRLKDIAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIA--------PNLISKFSQLEELYMGDSFSQWDKVEGGS 374 (561)
Q Consensus 303 ~~~l~~p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~--------~~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 374 (561)
+|.+...+.+..+++|++|++++|.....+..+..+++|+.+. ...++.+++|++|++++|....
T Consensus 119 ~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~------- 191 (347)
T 4fmz_A 119 EDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIED------- 191 (347)
T ss_dssp TSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCC-------
T ss_pred CCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccc-------
Confidence 8887773337788888888888874444444466666552221 1116788888899988876431
Q ss_pred ccchHhhcCCCCCcEEEEeeccCcccCcccccccccEEEEEeccccccCCCCccccceEEEecCCccchhhhhhhHHHhh
Q 041360 375 NASLAELKGLSKLTTLEIQVRDAQILPQDLVLVELQRYKICIGEAWRMWGVTSEISRLVRLHGLENVSTLLENYGMKMLL 454 (561)
Q Consensus 375 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~ll 454 (561)
...+..+++|+.|+++.+.+...+....+++|+.|++..+. +..........++..|++.++. ... .+.+..+
T Consensus 192 ---~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~l- 264 (347)
T 4fmz_A 192 ---ISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNK-ITDLSPLANLSQLTWLEIGTNQ-ISD-INAVKDL- 264 (347)
T ss_dssp ---CGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEECCSSC-CCC-CGGGTTC-
T ss_pred ---cccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCc-cCCCcchhcCCCCCEEECCCCc-cCC-ChhHhcC-
Confidence 12267788888888888888777666677888888885432 2222222333455666665543 222 2344454
Q ss_pred ccccceeeccccCcccccccccCCCCCCCccEEEEecCCccchhhcccCcccCCcCccccccccccccc-cccCCCCCCC
Q 041360 455 KEAEEIHLNELKGVQNAVHELDDGEGFPRLKHLRVESCSEILHIVGSVGRVRRKVFPLLESLSLKKASF-VILHGQKPTA 533 (561)
Q Consensus 455 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~c~~-~~~~~~~~~~ 533 (561)
++|+.|+++++ .+..++. ...+++|++|++++|. ++..+. .....+++|+.|++.+|+- .+ .++.
T Consensus 265 ~~L~~L~l~~n-~l~~~~~----~~~l~~L~~L~L~~n~-l~~~~~----~~l~~l~~L~~L~L~~n~l~~~----~~~~ 330 (347)
T 4fmz_A 265 TKLKMLNVGSN-QISDISV----LNNLSQLNSLFLNNNQ-LGNEDM----EVIGGLTNLTTLFLSQNHITDI----RPLA 330 (347)
T ss_dssp TTCCEEECCSS-CCCCCGG----GGGCTTCSEEECCSSC-CCGGGH----HHHHTCTTCSEEECCSSSCCCC----GGGG
T ss_pred CCcCEEEccCC-ccCCChh----hcCCCCCCEEECcCCc-CCCcCh----hHhhccccCCEEEccCCccccc----cChh
Confidence 88999999876 4555543 4568999999999974 443321 1235689999999999985 32 2267
Q ss_pred CCCCCcccCCCccc
Q 041360 534 ASKGPEREKPTTSL 547 (561)
Q Consensus 534 ~l~~L~~L~i~~c~ 547 (561)
.+++|+.|++.+|+
T Consensus 331 ~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 331 SLSKMDSADFANQV 344 (347)
T ss_dssp GCTTCSEESSSCC-
T ss_pred hhhccceeehhhhc
Confidence 88999999998875
No 3
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.89 E-value=1.8e-22 Score=205.42 Aligned_cols=293 Identities=16% Similarity=0.129 Sum_probs=199.9
Q ss_pred CCceEEEccCCCccccCCcc--CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCc-hhhcCCCCCcEE
Q 041360 223 KGPIAISLPHRDIQELPERL--QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLP-SSLGRLFNLQTL 299 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~L~~L~~L 299 (561)
.+++++++.++.+..+|... .+++|++|+++++. +..++...|+++++|++|++++|.+..+| ..++.+++|++|
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ--IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSC--CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCc--ccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 67888888888888888764 68888888888886 66666655688888888888888888874 457888888888
Q ss_pred EeCCCCCCC-ccc-ccCCCCCcEEEccCCcCcccCh-hhhcccccccc-------CchhhcCCCCCcEEEccCCcccccc
Q 041360 300 CLGGCRLKD-IAI-VGQLKKLEILSFRDSYIEELPH-EIGQLTRLVVI-------APNLISKFSQLEELYMGDSFSQWDK 369 (561)
Q Consensus 300 ~l~~~~l~~-p~~-i~~L~~L~~L~l~~~~~~~lp~-~i~~L~~L~~l-------~~~~i~~l~~L~~L~l~~~~~~~~~ 369 (561)
++++|.+.. |.. ++++++|++|++++|.+..++. .++++++|+.+ ....++.+++|+.|++++|...
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~--- 199 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS--- 199 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCS---
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeeccccccc---
Confidence 888888888 644 5888888888888888777643 35555444221 1112445666666666655431
Q ss_pred cCCCcccchHhhcCCCCCcEEEEeeccCcccCcccccccccEEEEEeccccccCCCCccccceEEEecCCccchhhhhhh
Q 041360 370 VEGGSNASLAELKGLSKLTTLEIQVRDAQILPQDLVLVELQRYKICIGEAWRMWGVTSEISRLVRLHGLENVSTLLENYG 449 (561)
Q Consensus 370 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~ 449 (561)
.+...++|+.|+++.|.+..++.. .+++|+.|++..+. +..........++..|++.++......+..
T Consensus 200 ----------~~~~~~~L~~L~l~~n~l~~~~~~-~~~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~ 267 (390)
T 3o6n_A 200 ----------TLAIPIAVEELDASHNSINVVRGP-VNVELTILKLQHNN-LTDTAWLLNYPGLVEVDLSYNELEKIMYHP 267 (390)
T ss_dssp ----------EEECCSSCSEEECCSSCCCEEECC-CCSSCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred ----------ccCCCCcceEEECCCCeeeecccc-ccccccEEECCCCC-CcccHHHcCCCCccEEECCCCcCCCcChhH
Confidence 233445677777777777666543 34678888875332 221111222345556666654423333555
Q ss_pred HHHhhccccceeeccccCcccccccccCCCCCCCccEEEEecCCccchhhcccCcccCCcCccccccccccccccccCCC
Q 041360 450 MKMLLKEAEEIHLNELKGVQNAVHELDDGEGFPRLKHLRVESCSEILHIVGSVGRVRRKVFPLLESLSLKKASFVILHGQ 529 (561)
Q Consensus 450 ~~~ll~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~ 529 (561)
+..+ ++|+.|+++++ .+..++.. ...+++|++|++++| +++.+|. ....+++|+.|++.+|+- . .
T Consensus 268 ~~~l-~~L~~L~L~~n-~l~~~~~~---~~~l~~L~~L~L~~n-~l~~~~~-----~~~~l~~L~~L~L~~N~i--~--~ 332 (390)
T 3o6n_A 268 FVKM-QRLERLYISNN-RLVALNLY---GQPIPTLKVLDLSHN-HLLHVER-----NQPQFDRLENLYLDHNSI--V--T 332 (390)
T ss_dssp GTTC-SSCCEEECCSS-CCCEEECS---SSCCTTCCEEECCSS-CCCCCGG-----GHHHHTTCSEEECCSSCC--C--C
T ss_pred cccc-ccCCEEECCCC-cCcccCcc---cCCCCCCCEEECCCC-cceecCc-----cccccCcCCEEECCCCcc--c--e
Confidence 6665 89999999875 45555543 457899999999996 6777763 336789999999999874 2 2
Q ss_pred CCCCCCCCCcccCCCccc
Q 041360 530 KPTAASKGPEREKPTTSL 547 (561)
Q Consensus 530 ~~~~~l~~L~~L~i~~c~ 547 (561)
+++..+++|+.|++.+++
T Consensus 333 ~~~~~~~~L~~L~l~~N~ 350 (390)
T 3o6n_A 333 LKLSTHHTLKNLTLSHND 350 (390)
T ss_dssp CCCCTTCCCSEEECCSSC
T ss_pred eCchhhccCCEEEcCCCC
Confidence 236778899999998765
No 4
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.87 E-value=2.9e-21 Score=201.22 Aligned_cols=290 Identities=15% Similarity=0.132 Sum_probs=177.2
Q ss_pred CCceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeC
Q 041360 223 KGPIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLG 302 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~ 302 (561)
.+++.+++.++.+..+|....+++|++|+++++. +..++. ++++++|++|++++|.+..+++ ++.+++|++|+++
T Consensus 46 ~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~--l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~ 120 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ--LTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLF 120 (466)
T ss_dssp HTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSC--CCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred ccccEEecCCCCCccCcchhhhcCCCEEECCCCc--cCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECC
Confidence 5688888888888888765578888999998886 666766 5888899999998888888877 8888889999998
Q ss_pred CCCCCCcccccCCCCCcEEEccCCcCcccChhhhccccccccC-------chhhcCCCCCcEEEccCCcccccccCCCcc
Q 041360 303 GCRLKDIAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIA-------PNLISKFSQLEELYMGDSFSQWDKVEGGSN 375 (561)
Q Consensus 303 ~~~l~~p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~-------~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 375 (561)
+|.+...+.++++++|++|++++|.+..+| .++++++|+.+. ...++++++|++|++++|....
T Consensus 121 ~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-------- 191 (466)
T 1o6v_A 121 NNQITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD-------- 191 (466)
T ss_dssp SSCCCCCGGGTTCTTCSEEEEEEEEECCCG-GGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC--------
T ss_pred CCCCCCChHHcCCCCCCEEECCCCccCCCh-hhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCC--------
Confidence 888887333888888999999888877776 366666663221 1126777788888877775421
Q ss_pred cchHhhcCCCCCcEEEEeeccCcccCcccccccccEEEEEecc---------------------ccccCCCCccccceEE
Q 041360 376 ASLAELKGLSKLTTLEIQVRDAQILPQDLVLVELQRYKICIGE---------------------AWRMWGVTSEISRLVR 434 (561)
Q Consensus 376 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~---------------------~~~~~~~~~~~~~l~~ 434 (561)
+..+..+++|+.|+++.|.+...+....+++|+.|++..+. .+..........++..
T Consensus 192 --~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~ 269 (466)
T 1o6v_A 192 --ISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTE 269 (466)
T ss_dssp --CGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSE
T ss_pred --ChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCE
Confidence 12244455555555555544444333344444444442211 1111111112223334
Q ss_pred EecCCccchhhhhhhHHHhhccccceeeccccCcccccccccCCCCCCCccEEEEecCCccchhhcccCcccCCcCcccc
Q 041360 435 LHGLENVSTLLENYGMKMLLKEAEEIHLNELKGVQNAVHELDDGEGFPRLKHLRVESCSEILHIVGSVGRVRRKVFPLLE 514 (561)
Q Consensus 435 L~~~~~~~~~~~~~~~~~ll~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~ 514 (561)
|++.++. ....+ .+..+ ++|+.|++.++. +..++. .+.+++|+.|++++| ++..++ ....+++|+
T Consensus 270 L~l~~n~-l~~~~-~~~~l-~~L~~L~L~~n~-l~~~~~----~~~l~~L~~L~L~~n-~l~~~~------~~~~l~~L~ 334 (466)
T 1o6v_A 270 LKLGANQ-ISNIS-PLAGL-TALTNLELNENQ-LEDISP----ISNLKNLTYLTLYFN-NISDIS------PVSSLTKLQ 334 (466)
T ss_dssp EECCSSC-CCCCG-GGTTC-TTCSEEECCSSC-CSCCGG----GGGCTTCSEEECCSS-CCSCCG------GGGGCTTCC
T ss_pred EECCCCc-cCccc-cccCC-CccCeEEcCCCc-ccCchh----hcCCCCCCEEECcCC-cCCCch------hhccCccCC
Confidence 4443322 11111 13333 566666665532 333322 235666777777665 444443 235677777
Q ss_pred ccccccccc-cccCCCCCCCCCCCCcccCCCccc
Q 041360 515 SLSLKKASF-VILHGQKPTAASKGPEREKPTTSL 547 (561)
Q Consensus 515 ~L~l~~c~~-~~~~~~~~~~~l~~L~~L~i~~c~ 547 (561)
.|.+.+|+- .+ ..+..+++|+.|++.+|.
T Consensus 335 ~L~l~~n~l~~~----~~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 335 RLFFYNNKVSDV----SSLANLTNINWLSAGHNQ 364 (466)
T ss_dssp EEECCSSCCCCC----GGGTTCTTCCEEECCSSC
T ss_pred EeECCCCccCCc----hhhccCCCCCEEeCCCCc
Confidence 777777764 32 235677888888887774
No 5
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.87 E-value=9.1e-22 Score=211.39 Aligned_cols=293 Identities=16% Similarity=0.127 Sum_probs=196.3
Q ss_pred CCceEEEccCCCccccCCcc--CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCch-hhcCCCCCcEE
Q 041360 223 KGPIAISLPHRDIQELPERL--QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPS-SLGRLFNLQTL 299 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~-~i~~L~~L~~L 299 (561)
.+++.+++.++.+..+|..+ .+++|++|+++++. +..++...|+.+++|++|++++|.+..+|+ .++.+++|++|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ--IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSC--CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCC--CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 56778888888887777764 67888888888876 566665556788888888888888877654 46788888888
Q ss_pred EeCCCCCCC-ccc-ccCCCCCcEEEccCCcCcccCh-hhhccccccccC-------chhhcCCCCCcEEEccCCcccccc
Q 041360 300 CLGGCRLKD-IAI-VGQLKKLEILSFRDSYIEELPH-EIGQLTRLVVIA-------PNLISKFSQLEELYMGDSFSQWDK 369 (561)
Q Consensus 300 ~l~~~~l~~-p~~-i~~L~~L~~L~l~~~~~~~lp~-~i~~L~~L~~l~-------~~~i~~l~~L~~L~l~~~~~~~~~ 369 (561)
+|++|.+.. |+. ++++++|++|++++|.+..+|. .++++++|+.+. ...++.+++|+.|++++|...
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~--- 205 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLS--- 205 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCS---
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccc---
Confidence 888888777 544 5788888888888887776654 355555442111 111345666666666665432
Q ss_pred cCCCcccchHhhcCCCCCcEEEEeeccCcccCcccccccccEEEEEeccccccCCCCccccceEEEecCCccchhhhhhh
Q 041360 370 VEGGSNASLAELKGLSKLTTLEIQVRDAQILPQDLVLVELQRYKICIGEAWRMWGVTSEISRLVRLHGLENVSTLLENYG 449 (561)
Q Consensus 370 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~ 449 (561)
.+....+|+.|+++.|.+..++... .++|+.|++..+. +..........++..|++.+|......+..
T Consensus 206 ----------~l~~~~~L~~L~ls~n~l~~~~~~~-~~~L~~L~L~~n~-l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~ 273 (597)
T 3oja_B 206 ----------TLAIPIAVEELDASHNSINVVRGPV-NVELTILKLQHNN-LTDTAWLLNYPGLVEVDLSYNELEKIMYHP 273 (597)
T ss_dssp ----------EEECCTTCSEEECCSSCCCEEECSC-CSCCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred ----------cccCCchhheeeccCCccccccccc-CCCCCEEECCCCC-CCCChhhccCCCCCEEECCCCccCCCCHHH
Confidence 2344557778888777776665443 3678888875332 221111223345556666554433334556
Q ss_pred HHHhhccccceeeccccCcccccccccCCCCCCCccEEEEecCCccchhhcccCcccCCcCccccccccccccccccCCC
Q 041360 450 MKMLLKEAEEIHLNELKGVQNAVHELDDGEGFPRLKHLRVESCSEILHIVGSVGRVRRKVFPLLESLSLKKASFVILHGQ 529 (561)
Q Consensus 450 ~~~ll~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~ 529 (561)
+..+ ++|+.|+++++ .+..++.. ...+++|++|++++| .+..+|. ....+++|+.|++.+|+- . .
T Consensus 274 ~~~l-~~L~~L~Ls~N-~l~~l~~~---~~~l~~L~~L~Ls~N-~l~~i~~-----~~~~l~~L~~L~L~~N~l--~--~ 338 (597)
T 3oja_B 274 FVKM-QRLERLYISNN-RLVALNLY---GQPIPTLKVLDLSHN-HLLHVER-----NQPQFDRLENLYLDHNSI--V--T 338 (597)
T ss_dssp GTTC-SSCCEEECTTS-CCCEEECS---SSCCTTCCEEECCSS-CCCCCGG-----GHHHHTTCSEEECCSSCC--C--C
T ss_pred hcCc-cCCCEEECCCC-CCCCCCcc---cccCCCCcEEECCCC-CCCccCc-----ccccCCCCCEEECCCCCC--C--C
Confidence 6666 89999999874 45555543 456899999999985 6777773 336789999999999874 1 2
Q ss_pred CCCCCCCCCcccCCCccc
Q 041360 530 KPTAASKGPEREKPTTSL 547 (561)
Q Consensus 530 ~~~~~l~~L~~L~i~~c~ 547 (561)
.++..+++|+.|++.+++
T Consensus 339 ~~~~~~~~L~~L~l~~N~ 356 (597)
T 3oja_B 339 LKLSTHHTLKNLTLSHND 356 (597)
T ss_dssp CCCCTTCCCSEEECCSSC
T ss_pred cChhhcCCCCEEEeeCCC
Confidence 246778899999998765
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.87 E-value=1.5e-21 Score=228.06 Aligned_cols=186 Identities=16% Similarity=0.250 Sum_probs=154.7
Q ss_pred CEEeeccchhhhcccCCcceEecCC-CCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHcCCChHHHHHHHHHHcCCCHH
Q 041360 1 MILTSRNRDLLERDMNSQKNFLIEV-LSKEEALQLFENILGDSTKTSTIQPIADEIVKRCGGLPVAVTTVANALKSKSLD 79 (561)
Q Consensus 1 IlvTTR~~~va~~~~~~~~~~~l~~-L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~~~ 79 (561)
||||||++.|+....+..+.+++.+ |++++|++||.+.++.. .+++++++++|+++|+|+||||+++|++|+.++ .
T Consensus 260 ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~--~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~ 336 (1249)
T 3sfz_A 260 ILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMK--KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-N 336 (1249)
T ss_dssp EEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC--STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-S
T ss_pred EEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC--hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-h
Confidence 7999999999854466778999996 99999999999999632 345568899999999999999999999999775 5
Q ss_pred HHHHHHHHHhhCCCCCCC----CchhhHHHHHHHHHHhcCChHHHHHHHhhcccCCCcccCHHHHHHHHhhcCccccccc
Q 041360 80 IWKDALSQLRSSNPREID----GMDKNVYTSIELSYNLLASKEAKSLFRLCGLYNEGHAIQVASLLRYGMGWGLFKNVYT 155 (561)
Q Consensus 80 ~w~~~~~~l~~~~~~~~~----~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~~~~~~l~~~w~a~g~~~~~~~ 155 (561)
.|+..++++.......+. .....+..++.+||+.||++ .|.||+|||+||+++.|++..++.+|.+++
T Consensus 337 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~------- 408 (1249)
T 3sfz_A 337 RWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCVLWDLET------- 408 (1249)
T ss_dssp CHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCTTCCEEHHHHHHHHTCCH-------
T ss_pred HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCCCCeeCHHHHHHHhCCCH-------
Confidence 799999998776433322 12467999999999999997 999999999999999999999999997652
Q ss_pred HHHHHHHHHHHHHHHHHcCcccccCC--CCceehhHHHHHHHHHHhhcC
Q 041360 156 LEEARSRVHRLIDNLKSSCLLLDGDG--KDEVKMHDVIHVVAVSIATEE 202 (561)
Q Consensus 156 ~~~~~~~~~~~i~~L~~~sll~~~~~--~~~~~mh~lv~~~~~~~~~~e 202 (561)
+.+.+++++|+++||++.... ..+|+||+++|++++....++
T Consensus 409 -----~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 409 -----EEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp -----HHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred -----HHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence 234557889999999986532 235999999999999987665
No 7
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=5.1e-22 Score=214.63 Aligned_cols=315 Identities=12% Similarity=0.061 Sum_probs=219.4
Q ss_pred CCceEEEccCCCc-cccCCcc-CCCCccEEEeeccCC-------------------------------------------
Q 041360 223 KGPIAISLPHRDI-QELPERL-QCPNLELFLLFRKGY------------------------------------------- 257 (561)
Q Consensus 223 ~~l~~l~l~~~~~-~~l~~~~-~~~~L~~L~l~~~~~------------------------------------------- 257 (561)
.+++.++++++.+ +.+|+.+ .+++|++|+++++..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 4788889988888 4677666 789999999988731
Q ss_pred ---------------------------------CCccccHHHHcCCCCccEEEecCCCCCC------------------C
Q 041360 258 ---------------------------------GSMQISDLFFEGTEEVKVLSLTGVRFSS------------------L 286 (561)
Q Consensus 258 ---------------------------------~~~~~~~~~~~~l~~Lr~L~l~~~~i~~------------------l 286 (561)
.+..+|..+ +++++|++|++++|.+.. +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l-~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAV-MRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGG-GGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHH-hcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 122366664 889999999999999888 8
Q ss_pred chhhc--CCCCCcEEEeCCCCCCC--cccccCCCCCcEEEccCCc-Cc--ccChhhhcc------ccc----------cc
Q 041360 287 PSSLG--RLFNLQTLCLGGCRLKD--IAIVGQLKKLEILSFRDSY-IE--ELPHEIGQL------TRL----------VV 343 (561)
Q Consensus 287 p~~i~--~L~~L~~L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~-~~--~lp~~i~~L------~~L----------~~ 343 (561)
|.+++ ++++|++|++++|.+.. |..++++++|++|++++|. +. .+|.++++| ++| ..
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ 319 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT 319 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc
Confidence 99888 99999999999998655 7889999999999999987 77 488888776 555 45
Q ss_pred cCc-hhhcCCCCCcEEEccCCcccccccCC--------------CcccchHhhcCCCC-CcEEEEeeccCcccCccc---
Q 041360 344 IAP-NLISKFSQLEELYMGDSFSQWDKVEG--------------GSNASLAELKGLSK-LTTLEIQVRDAQILPQDL--- 404 (561)
Q Consensus 344 l~~-~~i~~l~~L~~L~l~~~~~~~~~~~~--------------~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~--- 404 (561)
+|. ..++++++|++|++++|.....++.. ........+.++++ |+.|+++.|.+..+|..+
T Consensus 320 ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~ 399 (636)
T 4eco_A 320 FPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAK 399 (636)
T ss_dssp CCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTT
T ss_pred cCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhc
Confidence 565 24888889999998888765333211 01123345667777 888888888877777654
Q ss_pred ccccccEEEEEeccc---cccCCC-----CccccceEEEecCCccchhhhhhhHHHhhccccceeeccccCccccccccc
Q 041360 405 VLVELQRYKICIGEA---WRMWGV-----TSEISRLVRLHGLENVSTLLENYGMKMLLKEAEEIHLNELKGVQNAVHELD 476 (561)
Q Consensus 405 ~~~~L~~L~l~~~~~---~~~~~~-----~~~~~~l~~L~~~~~~~~~~~~~~~~~ll~~L~~L~l~~~~~~~~~~~~~~ 476 (561)
.+++|+.|++..+.. .|.++. .....++..|++.++. ....+..+...+++|+.|+++++. +..++...+
T Consensus 400 ~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~ 477 (636)
T 4eco_A 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKFPKELFSTGSPLSSINLMGNM-LTEIPKNSL 477 (636)
T ss_dssp CSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSCCTHHHHTTCCCSEEECCSSC-CSBCCSSSS
T ss_pred ccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcCCHHHHccCCCCCEEECCCCC-CCCcCHHHh
Confidence 234678877753321 122222 1134467778887765 334555554434899999999854 446655432
Q ss_pred C-----CCCCCCccEEEEecCCccchhhcccCcccCCcCccccccccccccc-cccCCCCCCCCCCCCcccCCCccc
Q 041360 477 D-----GEGFPRLKHLRVESCSEILHIVGSVGRVRRKVFPLLESLSLKKASF-VILHGQKPTAASKGPEREKPTTSL 547 (561)
Q Consensus 477 ~-----~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~c~~-~~~~~~~~~~~l~~L~~L~i~~c~ 547 (561)
. ...+++|++|+++++ +++.+|... ....+++|+.|++.+|.- .+ +..+..+++|+.|+++++.
T Consensus 478 ~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~---~~~~l~~L~~L~Ls~N~l~~i---p~~~~~l~~L~~L~Ls~N~ 547 (636)
T 4eco_A 478 KDENENFKNTYLLTSIDLRFN-KLTKLSDDF---RATTLPYLVGIDLSYNSFSKF---PTQPLNSSTLKGFGIRNQR 547 (636)
T ss_dssp EETTEECTTGGGCCEEECCSS-CCCBCCGGG---STTTCTTCCEEECCSSCCSSC---CCGGGGCSSCCEEECCSCB
T ss_pred ccccccccccCCccEEECcCC-cCCccChhh---hhccCCCcCEEECCCCCCCCc---ChhhhcCCCCCEEECCCCc
Confidence 0 012339999999995 677777322 113889999999999875 43 3346789999999997644
No 8
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.86 E-value=5.3e-21 Score=206.27 Aligned_cols=117 Identities=26% Similarity=0.342 Sum_probs=88.0
Q ss_pred CCceEEEccCCCccccCCc-c-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCC-chhhcCCCCCcEE
Q 041360 223 KGPIAISLPHRDIQELPER-L-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSL-PSSLGRLFNLQTL 299 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l-p~~i~~L~~L~~L 299 (561)
++++++++++|.+..++.. + .+++|++|+++++. +..+++..|+++++|++|++++|.+..+ |..++.+.+|++|
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 109 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCE--IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENL 109 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC--CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEE
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCc--ccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEE
Confidence 6788888888888777653 3 77888888888876 5566555567888888888888888776 6778888888888
Q ss_pred EeCCCCCCC-c-ccccCCCCCcEEEccCCcCc--ccChhhhccccc
Q 041360 300 CLGGCRLKD-I-AIVGQLKKLEILSFRDSYIE--ELPHEIGQLTRL 341 (561)
Q Consensus 300 ~l~~~~l~~-p-~~i~~L~~L~~L~l~~~~~~--~lp~~i~~L~~L 341 (561)
++++|.+.. + ..++++++|++|++++|.+. .+|..++++++|
T Consensus 110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L 155 (606)
T 3vq2_A 110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL 155 (606)
T ss_dssp ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTC
T ss_pred EccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCC
Confidence 888888766 3 66788888888888887776 367777777666
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.86 E-value=7e-21 Score=199.12 Aligned_cols=289 Identities=14% Similarity=0.088 Sum_probs=171.1
Q ss_pred CCceEEEccCCCccccCC-cc-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCch-hhcCCCCCcEE
Q 041360 223 KGPIAISLPHRDIQELPE-RL-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPS-SLGRLFNLQTL 299 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~-~i~~L~~L~~L 299 (561)
..++.|++++|.+..++. .+ .+++|++|+++++. +..++...|+++++|++|++++|.+..+|. .+..+++|++|
T Consensus 32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI--VSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL 109 (477)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEE
T ss_pred CCCcEEECCCCccceECHhHccCCCCCCEEECCCCc--cCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEE
Confidence 678888888888877754 33 78888888888886 555644445888888888888888888875 46788888888
Q ss_pred EeCCCCCCC--cccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccc
Q 041360 300 CLGGCRLKD--IAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNAS 377 (561)
Q Consensus 300 ~l~~~~l~~--p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 377 (561)
++++|.+.. +..+.++++|++|++++|.+..++. ..++++++|++|++++|......
T Consensus 110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------~~~~~l~~L~~L~l~~n~l~~~~-------- 168 (477)
T 2id5_A 110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-------------RAFSGLNSLEQLTLEKCNLTSIP-------- 168 (477)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT-------------TSSTTCTTCCEEEEESCCCSSCC--------
T ss_pred ECCCCccccCChhHccccccCCEEECCCCccceeCh-------------hhccCCCCCCEEECCCCcCcccC--------
Confidence 888888776 5678888888888888887765532 22556667777777666543111
Q ss_pred hHhhcCCCCCcEEEEeeccCcccCcc--cccccccEEEEEeccccccCC-CCccccceEEEecCCccchhhhh-hhHHHh
Q 041360 378 LAELKGLSKLTTLEIQVRDAQILPQD--LVLVELQRYKICIGEAWRMWG-VTSEISRLVRLHGLENVSTLLEN-YGMKML 453 (561)
Q Consensus 378 ~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~L~~~~~~~~~~~~-~~~~~l 453 (561)
...+.++++|+.|+++.|.+..++.. ..+++|+.|++..+....... ......++..|++.++. ....+ ..+..+
T Consensus 169 ~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l 247 (477)
T 2id5_A 169 TEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTAVPYLAVRHL 247 (477)
T ss_dssp HHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCSCCHHHHTTC
T ss_pred hhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCc-ccccCHHHhcCc
Confidence 14466667777777776666555432 255667777665432211110 01111234444444433 22222 233343
Q ss_pred hccccceeeccccCcccccccccCCCCCCCccEEEEecCCccchhhcccCcccCCcCccccccccccccc-cccCCCCCC
Q 041360 454 LKEAEEIHLNELKGVQNAVHELDDGEGFPRLKHLRVESCSEILHIVGSVGRVRRKVFPLLESLSLKKASF-VILHGQKPT 532 (561)
Q Consensus 454 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~c~~-~~~~~~~~~ 532 (561)
++|+.|+++++. +..++... ...+++|++|++.++ +++.++. .....+++|+.|++.++.- .+... .+
T Consensus 248 -~~L~~L~Ls~n~-l~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~--~~ 316 (477)
T 2id5_A 248 -VYLRFLNLSYNP-ISTIEGSM--LHELLRLQEIQLVGG-QLAVVEP----YAFRGLNYLRVLNVSGNQLTTLEES--VF 316 (477)
T ss_dssp -TTCCEEECCSSC-CCEECTTS--CTTCTTCCEEECCSS-CCSEECT----TTBTTCTTCCEEECCSSCCSCCCGG--GB
T ss_pred -cccCeeECCCCc-CCccChhh--ccccccCCEEECCCC-ccceECH----HHhcCcccCCEEECCCCcCceeCHh--Hc
Confidence 666777776543 33333221 245666666666663 4443321 1224456666666666543 22111 13
Q ss_pred CCCCCCcccCCCcc
Q 041360 533 AASKGPEREKPTTS 546 (561)
Q Consensus 533 ~~l~~L~~L~i~~c 546 (561)
..+++|+.|++.++
T Consensus 317 ~~l~~L~~L~l~~N 330 (477)
T 2id5_A 317 HSVGNLETLILDSN 330 (477)
T ss_dssp SCGGGCCEEECCSS
T ss_pred CCCcccCEEEccCC
Confidence 44556666666544
No 10
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=1.8e-21 Score=214.36 Aligned_cols=304 Identities=13% Similarity=0.085 Sum_probs=193.3
Q ss_pred CCceEEEccCCCccc------------------cCCcc---CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCC
Q 041360 223 KGPIAISLPHRDIQE------------------LPERL---QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGV 281 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~------------------l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~ 281 (561)
.+++.|++++|.+.. +|..+ .+++|+.|++++|. ....+|..+ +++++|++|++++|
T Consensus 448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~-l~~~iP~~l-~~L~~L~~L~Ls~N 525 (876)
T 4ecn_A 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCP-NMTQLPDFL-YDLPELQSLNIACN 525 (876)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCT-TCCSCCGGG-GGCSSCCEEECTTC
T ss_pred CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCC-CCccChHHH-hCCCCCCEEECcCC
Confidence 678999999998877 88876 58999999999987 566777664 88899999999998
Q ss_pred C-CCC--CchhhcCCC-------CCcEEEeCCCCCCC-cc--cccCCCCCcEEEccCCcCcccChhhhccccc-------
Q 041360 282 R-FSS--LPSSLGRLF-------NLQTLCLGGCRLKD-IA--IVGQLKKLEILSFRDSYIEELPHEIGQLTRL------- 341 (561)
Q Consensus 282 ~-i~~--lp~~i~~L~-------~L~~L~l~~~~l~~-p~--~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L------- 341 (561)
. +.. +|..++.+. +|++|++++|.+.. |. .++++++|++|++++|.+..+| .++++++|
T Consensus 526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~ 604 (876)
T 4ecn_A 526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDY 604 (876)
T ss_dssp TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCS
T ss_pred CCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcC
Confidence 7 775 787777665 88888888888877 76 7888888888888888888888 77777666
Q ss_pred ---cccCchhhcCCCC-CcEEEccCCcccccccCCCc---------------------ccchHhhc--CCCCCcEEEEee
Q 041360 342 ---VVIAPNLISKFSQ-LEELYMGDSFSQWDKVEGGS---------------------NASLAELK--GLSKLTTLEIQV 394 (561)
Q Consensus 342 ---~~l~~~~i~~l~~-L~~L~l~~~~~~~~~~~~~~---------------------~~~~~~l~--~l~~L~~L~l~~ 394 (561)
..+|.. +.++++ |+.|++++|.+. .++..-. ......+. .+.+|+.|+++.
T Consensus 605 N~l~~lp~~-l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~ 682 (876)
T 4ecn_A 605 NQIEEIPED-FCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY 682 (876)
T ss_dssp SCCSCCCTT-SCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCS
T ss_pred CccccchHH-HhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccC
Confidence 344544 677777 888888887654 2221100 00000111 223666777776
Q ss_pred ccCcccCccc--ccccccEEEEEecc--ccccCCCCcc------ccceEEEecCCccchhhhhhhHH--Hhhccccceee
Q 041360 395 RDAQILPQDL--VLVELQRYKICIGE--AWRMWGVTSE------ISRLVRLHGLENVSTLLENYGMK--MLLKEAEEIHL 462 (561)
Q Consensus 395 ~~~~~~~~~~--~~~~L~~L~l~~~~--~~~~~~~~~~------~~~l~~L~~~~~~~~~~~~~~~~--~ll~~L~~L~l 462 (561)
|.+..+|... .+++|+.|++..+. .+|.+..... ..++..|++.+|. ....+..+. .+ ++|+.|++
T Consensus 683 N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~l~~~~l-~~L~~L~L 760 (876)
T 4ecn_A 683 NEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDDFRATTL-PYLSNMDV 760 (876)
T ss_dssp SCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGGGSTTTC-TTCCEEEC
T ss_pred CcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCC-CccchHHhhhccC-CCcCEEEe
Confidence 6666666553 45677777774322 2222111111 1155566665544 224444443 33 77777777
Q ss_pred ccccCcccccccccCCCCCCCccEEEEecCC------ccchhhcccCcccCCcCccccccccccccc-cccCCCCCCCCC
Q 041360 463 NELKGVQNAVHELDDGEGFPRLKHLRVESCS------EILHIVGSVGRVRRKVFPLLESLSLKKASF-VILHGQKPTAAS 535 (561)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~------~l~~l~~~~~~~~~~~~~~L~~L~l~~c~~-~~~~~~~~~~~l 535 (561)
+++ .+..++.. ...+++|+.|++++++ -...+|. ....+++|+.|++.+|.- .++ ....
T Consensus 761 s~N-~L~~lp~~---l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~-----~l~~L~~L~~L~Ls~N~L~~Ip-----~~l~ 826 (876)
T 4ecn_A 761 SYN-CFSSFPTQ---PLNSSQLKAFGIRHQRDAEGNRILRQWPT-----GITTCPSLIQLQIGSNDIRKVD-----EKLT 826 (876)
T ss_dssp CSS-CCSSCCCG---GGGCTTCCEEECCCCBCTTCCBCCCCCCT-----TGGGCSSCCEEECCSSCCCBCC-----SCCC
T ss_pred CCC-CCCccchh---hhcCCCCCEEECCCCCCcccccccccChH-----HHhcCCCCCEEECCCCCCCccC-----Hhhc
Confidence 764 33345544 3357777777776532 1223331 235577777777777764 332 2233
Q ss_pred CCCcccCCCccc
Q 041360 536 KGPEREKPTTSL 547 (561)
Q Consensus 536 ~~L~~L~i~~c~ 547 (561)
++|+.|++++|+
T Consensus 827 ~~L~~LdLs~N~ 838 (876)
T 4ecn_A 827 PQLYILDIADNP 838 (876)
T ss_dssp SSSCEEECCSCT
T ss_pred CCCCEEECCCCC
Confidence 577777777775
No 11
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.86 E-value=2.3e-21 Score=209.50 Aligned_cols=304 Identities=13% Similarity=0.115 Sum_probs=196.1
Q ss_pred CCceEEEccCCCccc------------------cCCccC---CCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCC
Q 041360 223 KGPIAISLPHRDIQE------------------LPERLQ---CPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGV 281 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~------------------l~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~ 281 (561)
.+++.|++++|.+.. +|..+. +++|++|++++|. ....+|..+ +++++|++|++++|
T Consensus 206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~Ls~n 283 (636)
T 4eco_A 206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP-NLTKLPTFL-KALPEMQLINVACN 283 (636)
T ss_dssp TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT-TCSSCCTTT-TTCSSCCEEECTTC
T ss_pred cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCc-CCccChHHH-hcCCCCCEEECcCC
Confidence 678999999998877 887764 8899999999987 566777665 88999999999999
Q ss_pred C-CCC--CchhhcCC------CCCcEEEeCCCCCCC-cc--cccCCCCCcEEEccCCcCc-ccChhhhccccc-------
Q 041360 282 R-FSS--LPSSLGRL------FNLQTLCLGGCRLKD-IA--IVGQLKKLEILSFRDSYIE-ELPHEIGQLTRL------- 341 (561)
Q Consensus 282 ~-i~~--lp~~i~~L------~~L~~L~l~~~~l~~-p~--~i~~L~~L~~L~l~~~~~~-~lp~~i~~L~~L------- 341 (561)
. ++. +|..++.+ ++|++|++++|.++. |. .++++++|++|++++|.+. .+| .++++++|
T Consensus 284 ~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~ 362 (636)
T 4eco_A 284 RGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY 362 (636)
T ss_dssp TTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCS
T ss_pred CCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCC
Confidence 7 875 78888876 889999999998888 77 7889999999999888888 888 77777666
Q ss_pred ---cccCchhhcCCCC-CcEEEccCCcccccccCC-C-----------------cccchHhhc-------CCCCCcEEEE
Q 041360 342 ---VVIAPNLISKFSQ-LEELYMGDSFSQWDKVEG-G-----------------SNASLAELK-------GLSKLTTLEI 392 (561)
Q Consensus 342 ---~~l~~~~i~~l~~-L~~L~l~~~~~~~~~~~~-~-----------------~~~~~~~l~-------~l~~L~~L~l 392 (561)
..+|.. ++++++ |++|++++|... .++.. . .......+. .+++|+.|++
T Consensus 363 N~l~~lp~~-l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~L 440 (636)
T 4eco_A 363 NQITEIPAN-FCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINL 440 (636)
T ss_dssp SEEEECCTT-SEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEEC
T ss_pred CccccccHh-hhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEEC
Confidence 344544 677777 888888887654 22211 0 000012233 4556777777
Q ss_pred eeccCcccCccc--ccccccEEEEEecc--ccccCCCCcc------ccceEEEecCCccchhhhhhhHH--Hhhccccce
Q 041360 393 QVRDAQILPQDL--VLVELQRYKICIGE--AWRMWGVTSE------ISRLVRLHGLENVSTLLENYGMK--MLLKEAEEI 460 (561)
Q Consensus 393 ~~~~~~~~~~~~--~~~~L~~L~l~~~~--~~~~~~~~~~------~~~l~~L~~~~~~~~~~~~~~~~--~ll~~L~~L 460 (561)
+.|.+..+|... .+++|+.|++..+. .+|....... ..++..|++.+|. ....+..+. .+ ++|+.|
T Consensus 441 s~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~l-~~L~~L 518 (636)
T 4eco_A 441 SNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTKLSDDFRATTL-PYLVGI 518 (636)
T ss_dssp CSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCBCCGGGSTTTC-TTCCEE
T ss_pred cCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCc-CCccChhhhhccC-CCcCEE
Confidence 777766666543 36777777774322 1121111000 0155566665544 234444443 43 777777
Q ss_pred eeccccCcccccccccCCCCCCCccEEEEecCC------ccchhhcccCcccCCcCccccccccccccc-cccCCCCCCC
Q 041360 461 HLNELKGVQNAVHELDDGEGFPRLKHLRVESCS------EILHIVGSVGRVRRKVFPLLESLSLKKASF-VILHGQKPTA 533 (561)
Q Consensus 461 ~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~------~l~~l~~~~~~~~~~~~~~L~~L~l~~c~~-~~~~~~~~~~ 533 (561)
+++++. +..+|.. ...+++|++|+++++. -...+|. ....+++|+.|++.+|.- .++. .
T Consensus 519 ~Ls~N~-l~~ip~~---~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~-----~l~~l~~L~~L~Ls~N~l~~ip~-----~ 584 (636)
T 4eco_A 519 DLSYNS-FSKFPTQ---PLNSSTLKGFGIRNQRDAQGNRTLREWPE-----GITLCPSLTQLQIGSNDIRKVNE-----K 584 (636)
T ss_dssp ECCSSC-CSSCCCG---GGGCSSCCEEECCSCBCTTCCBCCCCCCT-----TGGGCSSCCEEECCSSCCCBCCS-----C
T ss_pred ECCCCC-CCCcChh---hhcCCCCCEEECCCCcccccCcccccChH-----HHhcCCCCCEEECCCCcCCccCH-----h
Confidence 777643 3335544 2357777777775422 1233331 234567777777777764 3322 2
Q ss_pred CCCCCcccCCCccc
Q 041360 534 ASKGPEREKPTTSL 547 (561)
Q Consensus 534 ~l~~L~~L~i~~c~ 547 (561)
..++|+.|++.+|+
T Consensus 585 ~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 585 ITPNISVLDIKDNP 598 (636)
T ss_dssp CCTTCCEEECCSCT
T ss_pred HhCcCCEEECcCCC
Confidence 23677777777764
No 12
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.86 E-value=1.6e-20 Score=195.75 Aligned_cols=289 Identities=16% Similarity=0.175 Sum_probs=196.7
Q ss_pred CCceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeC
Q 041360 223 KGPIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLG 302 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~ 302 (561)
.+++++++++|.+..++....+++|++|+++++. +..++. ++++++|++|++++|.+..+|. +..+++|++|+++
T Consensus 68 ~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~--l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~ 142 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQ--IADITP--LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELS 142 (466)
T ss_dssp TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC--CCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEE
T ss_pred cCCCEEECCCCccCCchhhhccccCCEEECCCCc--cccChh--hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECC
Confidence 6788888888888877764478888888888886 566665 5888888888888888888765 7888888888888
Q ss_pred CCCCCCccc---------------------ccCCCCCcEEEccCCcCcccChhhhccccccccC--------chhhcCCC
Q 041360 303 GCRLKDIAI---------------------VGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIA--------PNLISKFS 353 (561)
Q Consensus 303 ~~~l~~p~~---------------------i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~--------~~~i~~l~ 353 (561)
+|.+...+. ++++++|++|++++|.+..++. +.++++|+.+. ...++.++
T Consensus 143 ~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~l~ 221 (466)
T 1o6v_A 143 SNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGILT 221 (466)
T ss_dssp EEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGGGGCT
T ss_pred CCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCcccccccccccC
Confidence 887665223 4455566666666666555542 44444442110 00145666
Q ss_pred CCcEEEccCCcccccccCCCcccchHhhcCCCCCcEEEEeeccCcccCcccccccccEEEEEeccccccCCCCccccceE
Q 041360 354 QLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIQVRDAQILPQDLVLVELQRYKICIGEAWRMWGVTSEISRLV 433 (561)
Q Consensus 354 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~ 433 (561)
+|++|++++|... .+..+..+++|+.|+++.|.+..++....+++|+.|++..+. +..........++.
T Consensus 222 ~L~~L~l~~n~l~----------~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~ 290 (466)
T 1o6v_A 222 NLDELSLNGNQLK----------DIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ-ISNISPLAGLTALT 290 (466)
T ss_dssp TCCEEECCSSCCC----------CCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC-CCCCGGGTTCTTCS
T ss_pred CCCEEECCCCCcc----------cchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCc-cCccccccCCCccC
Confidence 7777777666442 124577788999999998888877766678889999885432 22222223344566
Q ss_pred EEecCCccchhhhhhhHHHhhccccceeeccccCcccccccccCCCCCCCccEEEEecCCccchhhcccCcccCCcCccc
Q 041360 434 RLHGLENVSTLLENYGMKMLLKEAEEIHLNELKGVQNAVHELDDGEGFPRLKHLRVESCSEILHIVGSVGRVRRKVFPLL 513 (561)
Q Consensus 434 ~L~~~~~~~~~~~~~~~~~ll~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L 513 (561)
.|++.++. .... ..+..+ ++|+.|+++++. +...+. ...+++|++|++.+| .++.++ ....+++|
T Consensus 291 ~L~L~~n~-l~~~-~~~~~l-~~L~~L~L~~n~-l~~~~~----~~~l~~L~~L~l~~n-~l~~~~------~l~~l~~L 355 (466)
T 1o6v_A 291 NLELNENQ-LEDI-SPISNL-KNLTYLTLYFNN-ISDISP----VSSLTKLQRLFFYNN-KVSDVS------SLANLTNI 355 (466)
T ss_dssp EEECCSSC-CSCC-GGGGGC-TTCSEEECCSSC-CSCCGG----GGGCTTCCEEECCSS-CCCCCG------GGTTCTTC
T ss_pred eEEcCCCc-ccCc-hhhcCC-CCCCEEECcCCc-CCCchh----hccCccCCEeECCCC-ccCCch------hhccCCCC
Confidence 66666544 2222 224454 899999999864 444433 346899999999986 666664 45678999
Q ss_pred cccccccccc-cccCCCCCCCCCCCCcccCCCccc
Q 041360 514 ESLSLKKASF-VILHGQKPTAASKGPEREKPTTSL 547 (561)
Q Consensus 514 ~~L~l~~c~~-~~~~~~~~~~~l~~L~~L~i~~c~ 547 (561)
+.|++.+|+- .+ .++..+++|+.|++.+|.
T Consensus 356 ~~L~l~~n~l~~~----~~~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 356 NWLSAGHNQISDL----TPLANLTRITQLGLNDQA 386 (466)
T ss_dssp CEEECCSSCCCBC----GGGTTCTTCCEEECCCEE
T ss_pred CEEeCCCCccCcc----chhhcCCCCCEEeccCCc
Confidence 9999998875 22 236788899999998874
No 13
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.85 E-value=4.2e-21 Score=211.45 Aligned_cols=271 Identities=11% Similarity=0.095 Sum_probs=189.7
Q ss_pred CCccccCCcc-CCCCccEEEeeccCCCCcc------------------ccHHH-HcCCCCccEEEecCCCCC-CCchhhc
Q 041360 233 RDIQELPERL-QCPNLELFLLFRKGYGSMQ------------------ISDLF-FEGTEEVKVLSLTGVRFS-SLPSSLG 291 (561)
Q Consensus 233 ~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~------------------~~~~~-~~~l~~Lr~L~l~~~~i~-~lp~~i~ 291 (561)
|.+..+|..+ .+++|++|+++++. +.. +|..+ |.++++|++|++++|.+. .+|..++
T Consensus 435 N~L~~IP~~l~~L~~L~~L~Ls~N~--Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 435 NRITFISKAIQRLTKLQIIYFANSP--FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp CEEEEECGGGGGCTTCCEEEEESCC--CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred CcccchhHHHhcCCCCCEEECcCCc--CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence 5555588877 89999999999998 444 88876 349999999999999855 4899999
Q ss_pred CCCCCcEEEeCCCC-CCC---cccccCCC-------CCcEEEccCCcCcccCh--hhhccccc----------cccCchh
Q 041360 292 RLFNLQTLCLGGCR-LKD---IAIVGQLK-------KLEILSFRDSYIEELPH--EIGQLTRL----------VVIAPNL 348 (561)
Q Consensus 292 ~L~~L~~L~l~~~~-l~~---p~~i~~L~-------~L~~L~l~~~~~~~lp~--~i~~L~~L----------~~l~~~~ 348 (561)
++++|++|++++|. ++. |..++++. +|++|++++|.+..+|. .++++++| ..+| .
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp--~ 590 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE--A 590 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC--C
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch--h
Confidence 99999999999998 773 66676665 99999999999999999 89988887 4556 4
Q ss_pred hcCCCCCcEEEccCCcccccccCCCcccchHhhcCCCC-CcEEEEeeccCcccCccc---ccccccEEEEEeccc---cc
Q 041360 349 ISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLSK-LTTLEIQVRDAQILPQDL---VLVELQRYKICIGEA---WR 421 (561)
Q Consensus 349 i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~---~~~~L~~L~l~~~~~---~~ 421 (561)
++++++|+.|++++|... ..+ ..+.++++ |+.|+++.|.+..+|..+ ..++|+.|++..+.. .|
T Consensus 591 ~~~L~~L~~L~Ls~N~l~-~lp--------~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip 661 (876)
T 4ecn_A 591 FGTNVKLTDLKLDYNQIE-EIP--------EDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGR 661 (876)
T ss_dssp CCTTSEESEEECCSSCCS-CCC--------TTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred hcCCCcceEEECcCCccc-cch--------HHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccc
Confidence 889999999999999765 333 45788888 999999999998888664 234588888854321 12
Q ss_pred cC---CCCccccceEEEecCCccchhhhhhhHHHhhccccceeeccccCcccccccccC-----CCCCCCccEEEEecCC
Q 041360 422 MW---GVTSEISRLVRLHGLENVSTLLENYGMKMLLKEAEEIHLNELKGVQNAVHELDD-----GEGFPRLKHLRVESCS 493 (561)
Q Consensus 422 ~~---~~~~~~~~l~~L~~~~~~~~~~~~~~~~~ll~~L~~L~l~~~~~~~~~~~~~~~-----~~~~~~L~~L~l~~c~ 493 (561)
.+ .......++..|++.+|. ....+.++...+++|+.|+++++ .+..++..++. ...+++|++|++++|
T Consensus 662 ~l~~~l~~~~~~~L~~L~Ls~N~-L~~lp~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N- 738 (876)
T 4ecn_A 662 NISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFN- 738 (876)
T ss_dssp SCSSCTTTCCCCCEEEEECCSSC-CCSCCHHHHHTTCCCSEEECCSC-CCSCCCTTSSSCTTSCCTTGGGCCEEECCSS-
T ss_pred cchhhhccccCCCcCEEEccCCc-CCccCHHHHccCCCCCEEECCCC-cCCccChHHhccccccccccCCccEEECCCC-
Confidence 22 222334467778777765 33445555433377888887764 34455443220 011236666666664
Q ss_pred ccchhhcccCcccCCcCcccccccccccc
Q 041360 494 EILHIVGSVGRVRRKVFPLLESLSLKKAS 522 (561)
Q Consensus 494 ~l~~l~~~~~~~~~~~~~~L~~L~l~~c~ 522 (561)
+++.+|... ....+++|+.|++.+|.
T Consensus 739 ~L~~lp~~l---~~~~l~~L~~L~Ls~N~ 764 (876)
T 4ecn_A 739 KLTSLSDDF---RATTLPYLSNMDVSYNC 764 (876)
T ss_dssp CCCCCCGGG---STTTCTTCCEEECCSSC
T ss_pred CCccchHHh---hhccCCCcCEEEeCCCC
Confidence 555555211 01145555555555544
No 14
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.85 E-value=2.5e-20 Score=186.43 Aligned_cols=268 Identities=16% Similarity=0.180 Sum_probs=206.9
Q ss_pred CCceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeC
Q 041360 223 KGPIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLG 302 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~ 302 (561)
++++++++++|.+..++....+++|++|+++++. +..++. |+++++|++|++++|.+..+|. +..+++|++|+++
T Consensus 66 ~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~--i~~~~~--~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~ 140 (347)
T 4fmz_A 66 TNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNK--ITDISA--LQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLG 140 (347)
T ss_dssp TTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSC--CCCCGG--GTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECT
T ss_pred CCccEEEccCCccccchhhhcCCcCCEEEccCCc--ccCchH--HcCCCcCCEEECcCCcccCchh-hccCCceeEEECC
Confidence 6899999999999888875589999999999997 666764 6899999999999999999887 8999999999999
Q ss_pred CCC-CCCcccccCCCCCcEEEccCCcCcccChhhhcccccc----------ccCchhhcCCCCCcEEEccCCcccccccC
Q 041360 303 GCR-LKDIAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLV----------VIAPNLISKFSQLEELYMGDSFSQWDKVE 371 (561)
Q Consensus 303 ~~~-l~~p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~----------~l~~~~i~~l~~L~~L~l~~~~~~~~~~~ 371 (561)
+|. +..++.+..+++|++|++++|.+..++. +..+++|+ .++. +..+++|+.|++++|....
T Consensus 141 ~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~---- 213 (347)
T 4fmz_A 141 ANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD---- 213 (347)
T ss_dssp TCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC----
T ss_pred CCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCC----
Confidence 997 4447779999999999999999888875 66666662 3333 7889999999999886531
Q ss_pred CCcccchHhhcCCCCCcEEEEeeccCcccCcccccccccEEEEEeccccccCCCCccccceEEEecCCccchhhhhhhHH
Q 041360 372 GGSNASLAELKGLSKLTTLEIQVRDAQILPQDLVLVELQRYKICIGEAWRMWGVTSEISRLVRLHGLENVSTLLENYGMK 451 (561)
Q Consensus 372 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~ 451 (561)
...+..+++|+.|+++.|.+..++....+++|+.|++..+ .+..........++..|++.+|. ... ...+.
T Consensus 214 ------~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~ 284 (347)
T 4fmz_A 214 ------ITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQ-ISD-ISVLN 284 (347)
T ss_dssp ------CGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCC-CGGGG
T ss_pred ------CchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCCc-cCC-Chhhc
Confidence 1227788999999999999988887668899999998643 22222222334456666666644 222 23455
Q ss_pred HhhccccceeeccccCcccccccccCCCCCCCccEEEEecCCccchhhcccCcccCCcCcccccccccccc
Q 041360 452 MLLKEAEEIHLNELKGVQNAVHELDDGEGFPRLKHLRVESCSEILHIVGSVGRVRRKVFPLLESLSLKKAS 522 (561)
Q Consensus 452 ~ll~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~c~ 522 (561)
.+ ++|+.|+++++.-....+.. ...+++|++|++++|+ ++.++ ....+++|++|++.+|+
T Consensus 285 ~l-~~L~~L~L~~n~l~~~~~~~---l~~l~~L~~L~L~~n~-l~~~~------~~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 285 NL-SQLNSLFLNNNQLGNEDMEV---IGGLTNLTTLFLSQNH-ITDIR------PLASLSKMDSADFANQV 344 (347)
T ss_dssp GC-TTCSEEECCSSCCCGGGHHH---HHTCTTCSEEECCSSS-CCCCG------GGGGCTTCSEESSSCC-
T ss_pred CC-CCCCEEECcCCcCCCcChhH---hhccccCCEEEccCCc-ccccc------Chhhhhccceeehhhhc
Confidence 55 99999999987544333333 3479999999999974 77666 35789999999999986
No 15
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=5.5e-21 Score=194.47 Aligned_cols=276 Identities=12% Similarity=0.129 Sum_probs=202.1
Q ss_pred CCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCc-hhhcCCCCCcEEEeCCCCCCC--cccccCC
Q 041360 239 PERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLP-SSLGRLFNLQTLCLGGCRLKD--IAIVGQL 315 (561)
Q Consensus 239 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~l~~--p~~i~~L 315 (561)
+..+.+++++.|++.++. +..+|..+|+++++|++|++++|.+..+| ..+..+++|++|++++|.+.. |..++++
T Consensus 39 ~~~~~l~~l~~l~l~~~~--l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 116 (390)
T 3o6n_A 39 FEDITLNNQKIVTFKNST--MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV 116 (390)
T ss_dssp CSSGGGCCCSEEEEESCE--ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred ccccccCCceEEEecCCc--hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCC
Confidence 334578999999999997 88999998899999999999999999976 489999999999999999888 4678999
Q ss_pred CCCcEEEccCCcCcccChhh-hccccc----------cccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhcCC
Q 041360 316 KKLEILSFRDSYIEELPHEI-GQLTRL----------VVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGL 384 (561)
Q Consensus 316 ~~L~~L~l~~~~~~~lp~~i-~~L~~L----------~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l 384 (561)
++|++|++++|.+..+|.++ +++++| ..+++..++++++|++|++++|.... ..+..+
T Consensus 117 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----------~~~~~l 185 (390)
T 3o6n_A 117 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-----------VDLSLI 185 (390)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-----------CCGGGC
T ss_pred CCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-----------cccccc
Confidence 99999999999999998764 556555 33444446777888888887775431 124556
Q ss_pred CCCcEEEEeeccCcccCcccccccccEEEEEeccccccCCCCccccceEEEecCCccchhhhhhhHHHhhccccceeecc
Q 041360 385 SKLTTLEIQVRDAQILPQDLVLVELQRYKICIGEAWRMWGVTSEISRLVRLHGLENVSTLLENYGMKMLLKEAEEIHLNE 464 (561)
Q Consensus 385 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~ll~~L~~L~l~~ 464 (561)
++|+.|+++.|.+..++ ..++|+.|++.... +... +.....++..|++.++. . ....++..+ ++|+.|++++
T Consensus 186 ~~L~~L~l~~n~l~~~~---~~~~L~~L~l~~n~-l~~~-~~~~~~~L~~L~l~~n~-l-~~~~~l~~l-~~L~~L~Ls~ 257 (390)
T 3o6n_A 186 PSLFHANVSYNLLSTLA---IPIAVEELDASHNS-INVV-RGPVNVELTILKLQHNN-L-TDTAWLLNY-PGLVEVDLSY 257 (390)
T ss_dssp TTCSEEECCSSCCSEEE---CCSSCSEEECCSSC-CCEE-ECCCCSSCCEEECCSSC-C-CCCGGGGGC-TTCSEEECCS
T ss_pred cccceeecccccccccC---CCCcceEEECCCCe-eeec-cccccccccEEECCCCC-C-cccHHHcCC-CCccEEECCC
Confidence 77888888877665443 34577887774332 1111 11223456667776543 2 223455565 9999999998
Q ss_pred ccCcccccccccCCCCCCCccEEEEecCCccchhhcccCcccCCcCccccccccccccc-cccCCCCCCCCCCCCcccCC
Q 041360 465 LKGVQNAVHELDDGEGFPRLKHLRVESCSEILHIVGSVGRVRRKVFPLLESLSLKKASF-VILHGQKPTAASKGPEREKP 543 (561)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~c~~-~~~~~~~~~~~l~~L~~L~i 543 (561)
+.-....+.. ...+++|++|+++++ +++.++ .....+++|+.|++.+|.- .++. .+..+++|+.|++
T Consensus 258 n~l~~~~~~~---~~~l~~L~~L~L~~n-~l~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~---~~~~l~~L~~L~L 325 (390)
T 3o6n_A 258 NELEKIMYHP---FVKMQRLERLYISNN-RLVALN-----LYGQPIPTLKVLDLSHNHLLHVER---NQPQFDRLENLYL 325 (390)
T ss_dssp SCCCEEESGG---GTTCSSCCEEECCSS-CCCEEE-----CSSSCCTTCCEEECCSSCCCCCGG---GHHHHTTCSEEEC
T ss_pred CcCCCcChhH---ccccccCCEEECCCC-cCcccC-----cccCCCCCCCEEECCCCcceecCc---cccccCcCCEEEC
Confidence 6433333333 457999999999994 777776 2346789999999999974 4332 2567889999999
Q ss_pred Cccc
Q 041360 544 TTSL 547 (561)
Q Consensus 544 ~~c~ 547 (561)
.+|.
T Consensus 326 ~~N~ 329 (390)
T 3o6n_A 326 DHNS 329 (390)
T ss_dssp CSSC
T ss_pred CCCc
Confidence 8875
No 16
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.85 E-value=1e-20 Score=196.74 Aligned_cols=313 Identities=16% Similarity=0.155 Sum_probs=189.3
Q ss_pred ccCCCceEEEccCCCccccC-Ccc-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCC-chhhcCCCCC
Q 041360 220 TKQKGPIAISLPHRDIQELP-ERL-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSL-PSSLGRLFNL 296 (561)
Q Consensus 220 ~~~~~l~~l~l~~~~~~~l~-~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l-p~~i~~L~~L 296 (561)
.+ +++++|++++|.+..++ ..+ .+++|++|+++++. ....++...|+++++|++|++++|.+..+ |..++.+.+|
T Consensus 28 l~-~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 105 (455)
T 3v47_A 28 LP-AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQT-PGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANL 105 (455)
T ss_dssp CC-TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCS-TTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTC
T ss_pred CC-CccCEEEecCCccCcCChhHhccCccccEEECcCCc-ccceECcccccccccCCEEeCCCCccCccChhhccCcccC
Confidence 44 78999999999998774 444 89999999999997 34467666679999999999999999886 7889999999
Q ss_pred cEEEeCCCCCCC--ccc--ccCCCCCcEEEccCCcCccc-Chh-hhcccccccc----------CchhhcCC--CCCcEE
Q 041360 297 QTLCLGGCRLKD--IAI--VGQLKKLEILSFRDSYIEEL-PHE-IGQLTRLVVI----------APNLISKF--SQLEEL 358 (561)
Q Consensus 297 ~~L~l~~~~l~~--p~~--i~~L~~L~~L~l~~~~~~~l-p~~-i~~L~~L~~l----------~~~~i~~l--~~L~~L 358 (561)
++|++++|.+.. |.. ++.+++|++|++++|.+..+ |.. ++++++|+.+ +...+..+ .+|+.|
T Consensus 106 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L 185 (455)
T 3v47_A 106 EVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL 185 (455)
T ss_dssp CEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEE
T ss_pred CEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccc
Confidence 999999999887 544 99999999999999998877 444 5666666221 12122222 344444
Q ss_pred EccCCcccccccCCCcccchHhhcCCCCCcEEEEeeccCccc-Ccc----------------------------------
Q 041360 359 YMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIQVRDAQIL-PQD---------------------------------- 403 (561)
Q Consensus 359 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~---------------------------------- 403 (561)
++.+|.................+..+++|+.|+++.|.+... +..
T Consensus 186 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 265 (455)
T 3v47_A 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPD 265 (455)
T ss_dssp ECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCC
T ss_pred ccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCc
Confidence 444443221111000000011122334455555554433210 000
Q ss_pred ------cccccccEEEEEecc---ccccCCCCccccceEEEecCCccchhhhhhhHHHhhccccceeeccccCccccccc
Q 041360 404 ------LVLVELQRYKICIGE---AWRMWGVTSEISRLVRLHGLENVSTLLENYGMKMLLKEAEEIHLNELKGVQNAVHE 474 (561)
Q Consensus 404 ------~~~~~L~~L~l~~~~---~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~ll~~L~~L~l~~~~~~~~~~~~ 474 (561)
...++|+.|++..+. ..+.+.... .++..|++.++......+..+..+ ++|+.|+++++. +..++..
T Consensus 266 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~-l~~~~~~ 341 (455)
T 3v47_A 266 NFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF--TDLEQLTLAQNEINKIDDNAFWGL-THLLKLNLSQNF-LGSIDSR 341 (455)
T ss_dssp TTTTGGGTTSCCCEEECCSSCCCEECTTTTTTC--TTCCEEECTTSCCCEECTTTTTTC-TTCCEEECCSSC-CCEECGG
T ss_pred ccccccccccCceEEEecCccccccchhhcccC--CCCCEEECCCCcccccChhHhcCc-ccCCEEECCCCc-cCCcChh
Confidence 012456666664322 112222222 344555555444222334455555 778888887753 3433222
Q ss_pred ccCCCCCCCccEEEEecCCccchhhcccCcccCCcCccccccccccccc-cccCCCCCCCCCCCCcccCCCccc
Q 041360 475 LDDGEGFPRLKHLRVESCSEILHIVGSVGRVRRKVFPLLESLSLKKASF-VILHGQKPTAASKGPEREKPTTSL 547 (561)
Q Consensus 475 ~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~c~~-~~~~~~~~~~~l~~L~~L~i~~c~ 547 (561)
. ...+++|++|+++++ +++.++. .....+++|+.|++.++.- .++.. .+..+++|+.|++.+++
T Consensus 342 ~--~~~l~~L~~L~Ls~N-~l~~~~~----~~~~~l~~L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 342 M--FENLDKLEVLDLSYN-HIRALGD----QSFLGLPNLKELALDTNQLKSVPDG--IFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp G--GTTCTTCCEEECCSS-CCCEECT----TTTTTCTTCCEEECCSSCCSCCCTT--TTTTCTTCCEEECCSSC
T ss_pred H--hcCcccCCEEECCCC-cccccCh----hhccccccccEEECCCCccccCCHh--HhccCCcccEEEccCCC
Confidence 1 356788888888875 4554421 1335678888888888764 33222 24667788888886654
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.84 E-value=2.9e-20 Score=199.04 Aligned_cols=117 Identities=26% Similarity=0.327 Sum_probs=83.0
Q ss_pred CCceEEEccCCCccccCCc-c-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCc-hhhcCCCCCcEE
Q 041360 223 KGPIAISLPHRDIQELPER-L-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLP-SSLGRLFNLQTL 299 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~L~~L~~L 299 (561)
..++++++++|.+..++.. + .+++|++|++++|. +..++...|+++++|++|++++|.+..+| ..++.+.+|++|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE--IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCC--CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCc--CCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence 5677788877777666543 2 67777888887776 55666555677777777777777777764 567777777777
Q ss_pred EeCCCCCCC-c-ccccCCCCCcEEEccCCcCcc--cChhhhccccc
Q 041360 300 CLGGCRLKD-I-AIVGQLKKLEILSFRDSYIEE--LPHEIGQLTRL 341 (561)
Q Consensus 300 ~l~~~~l~~-p-~~i~~L~~L~~L~l~~~~~~~--lp~~i~~L~~L 341 (561)
++++|.+.. + ..++++++|++|++++|.+.. +|..++++++|
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L 151 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCC
Confidence 777777766 3 357777777777777776664 57777766666
No 18
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.84 E-value=3.4e-20 Score=199.96 Aligned_cols=311 Identities=18% Similarity=0.149 Sum_probs=193.1
Q ss_pred CCceEEEccCCCccccCC-cc-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCC-chhhcCCCCCcEE
Q 041360 223 KGPIAISLPHRDIQELPE-RL-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSL-PSSLGRLFNLQTL 299 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l-p~~i~~L~~L~~L 299 (561)
..++++++++|.+..+++ .+ .+++|++|+++++. +..+++..|+++++|++|++++|.+..+ |..++.+++|++|
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 110 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ--IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL 110 (606)
T ss_dssp TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCC--CCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEE
T ss_pred CcCcEEEccCCccCcCChhHhccCccceEEECCCCc--cceeChhhccCccccCeeeCCCCcccccChhhhcccccccEe
Confidence 788999999999988754 34 78999999999987 5556555568999999999999998885 6788999999999
Q ss_pred EeCCCCCCC--cccccCCCCCcEEEccCCcCccc--Chhhhccccc----------cccCchhhcCCCCCc--EEEccCC
Q 041360 300 CLGGCRLKD--IAIVGQLKKLEILSFRDSYIEEL--PHEIGQLTRL----------VVIAPNLISKFSQLE--ELYMGDS 363 (561)
Q Consensus 300 ~l~~~~l~~--p~~i~~L~~L~~L~l~~~~~~~l--p~~i~~L~~L----------~~l~~~~i~~l~~L~--~L~l~~~ 363 (561)
++++|.+.. +..++++++|++|++++|.+..+ |..+ .+++| ..+++..++.+++|+ +|++++|
T Consensus 111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n 189 (606)
T 3t6q_A 111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF-PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN 189 (606)
T ss_dssp ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTC-CCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC
T ss_pred eccccCcccCCcchhccCCcccEEECCCCcccccCccccc-CCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC
Confidence 999999887 57889999999999999988876 4333 35555 334445577888888 7777777
Q ss_pred cccccccCCCc-------------------------------------------------------------------cc
Q 041360 364 FSQWDKVEGGS-------------------------------------------------------------------NA 376 (561)
Q Consensus 364 ~~~~~~~~~~~-------------------------------------------------------------------~~ 376 (561)
......+.... ..
T Consensus 190 ~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~ 269 (606)
T 3t6q_A 190 DIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI 269 (606)
T ss_dssp CCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSC
T ss_pred ccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCcc
Confidence 54322211100 00
Q ss_pred chHhhcCCCCCcEEEEeeccCcccCccc-ccccccEEEEEecc---ccccCCCCccccceEEEecCCccchhhh-hhhHH
Q 041360 377 SLAELKGLSKLTTLEIQVRDAQILPQDL-VLVELQRYKICIGE---AWRMWGVTSEISRLVRLHGLENVSTLLE-NYGMK 451 (561)
Q Consensus 377 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~---~~~~~~~~~~~~~l~~L~~~~~~~~~~~-~~~~~ 451 (561)
....++++++|+.|+++.|.+..+|..+ .+++|+.|++..+. ..+...... .++..|++.++...... ...+.
T Consensus 270 ~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~~~~~~~~~~~~ 347 (606)
T 3t6q_A 270 SSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNF--PSLTHLSIKGNTKRLELGTGCLE 347 (606)
T ss_dssp CTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC--TTCSEEECCSCSSCCBCCSSTTT
T ss_pred CHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhcc--CcCCEEECCCCCcccccchhhhh
Confidence 0112455566666666666666665543 45666666663221 111112222 23444444433211112 22233
Q ss_pred HhhccccceeeccccCcccccc-cccCCCCCCCccEEEEecCCccchhhcccCcccCCcCccccccccccccc-cccCCC
Q 041360 452 MLLKEAEEIHLNELKGVQNAVH-ELDDGEGFPRLKHLRVESCSEILHIVGSVGRVRRKVFPLLESLSLKKASF-VILHGQ 529 (561)
Q Consensus 452 ~ll~~L~~L~l~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~c~~-~~~~~~ 529 (561)
.+ ++|+.|+++++.- ..... ... ...+++|++|+++++ ++..++. .....+++|+.|++.+|.- ... .+
T Consensus 348 ~l-~~L~~L~l~~n~l-~~~~~~~~~-~~~l~~L~~L~l~~n-~l~~~~~----~~~~~l~~L~~L~l~~n~l~~~~-~~ 418 (606)
T 3t6q_A 348 NL-ENLRELDLSHDDI-ETSDCCNLQ-LRNLSHLQSLNLSYN-EPLSLKT----EAFKECPQLELLDLAFTRLKVKD-AQ 418 (606)
T ss_dssp TC-TTCCEEECCSSCC-CEEEESTTT-TTTCTTCCEEECCSC-SCEEECT----TTTTTCTTCSEEECTTCCEECCT-TC
T ss_pred cc-CcCCEEECCCCcc-ccccCcchh-cccCCCCCEEECCCC-cCCcCCH----HHhcCCccCCeEECCCCcCCCcc-cc
Confidence 43 6677777765432 22210 011 456777777777775 3333321 1235677888888887765 221 11
Q ss_pred CCCCCCCCCcccCCCccc
Q 041360 530 KPTAASKGPEREKPTTSL 547 (561)
Q Consensus 530 ~~~~~l~~L~~L~i~~c~ 547 (561)
..+..+++|+.|++.+|.
T Consensus 419 ~~~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 419 SPFQNLHLLKVLNLSHSL 436 (606)
T ss_dssp CTTTTCTTCCEEECTTCC
T ss_pred hhhhCcccCCEEECCCCc
Confidence 225678888888888774
No 19
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.84 E-value=5.8e-20 Score=182.44 Aligned_cols=290 Identities=15% Similarity=0.121 Sum_probs=200.0
Q ss_pred CceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCC-chhhcCCCCCcEEEeC
Q 041360 224 GPIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSL-PSSLGRLFNLQTLCLG 302 (561)
Q Consensus 224 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l-p~~i~~L~~L~~L~l~ 302 (561)
+++.++++++.+..+|..+ .+++++|+++++. +..++...|+++++|++|++++|.+..+ |..++.+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~-~~~l~~L~L~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL-PPDTALLDLQNNK--ITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC-CTTCCEEECCSSC--CCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCccccCccC-CCCCeEEECCCCc--CCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 5678888888888887654 3688999999987 7777776668999999999999998887 7789999999999999
Q ss_pred CCCCCC-cccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhh
Q 041360 303 GCRLKD-IAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAEL 381 (561)
Q Consensus 303 ~~~l~~-p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 381 (561)
+|.++. |..+. ++|++|++++|.+..++. ..++++++|++|++++|...... .....+
T Consensus 109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~-------------~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~ 167 (330)
T 1xku_A 109 KNQLKELPEKMP--KTLQELRVHENEITKVRK-------------SVFNGLNQMIVVELGTNPLKSSG------IENGAF 167 (330)
T ss_dssp SSCCSBCCSSCC--TTCCEEECCSSCCCBBCH-------------HHHTTCTTCCEEECCSSCCCGGG------BCTTGG
T ss_pred CCcCCccChhhc--ccccEEECCCCcccccCH-------------hHhcCCccccEEECCCCcCCccC------cChhhc
Confidence 998887 66554 789999999988776653 23678888888888887653211 122457
Q ss_pred cCCCCCcEEEEeeccCcccCcccccccccEEEEEeccc---cccCCCCccccceEEEecCCccchhhhhhhHHHhhcccc
Q 041360 382 KGLSKLTTLEIQVRDAQILPQDLVLVELQRYKICIGEA---WRMWGVTSEISRLVRLHGLENVSTLLENYGMKMLLKEAE 458 (561)
Q Consensus 382 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~---~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~ll~~L~ 458 (561)
.++++|+.|+++.|.+..+|.... ++|+.|++..+.. .+.+.... .++..|++.++......+..+..+ ++|+
T Consensus 168 ~~l~~L~~L~l~~n~l~~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~ 243 (330)
T 1xku_A 168 QGMKKLSYIRIADTNITTIPQGLP-PSLTELHLDGNKITKVDAASLKGL--NNLAKLGLSFNSISAVDNGSLANT-PHLR 243 (330)
T ss_dssp GGCTTCCEEECCSSCCCSCCSSCC-TTCSEEECTTSCCCEECTGGGTTC--TTCCEEECCSSCCCEECTTTGGGS-TTCC
T ss_pred cCCCCcCEEECCCCccccCCcccc-ccCCEEECCCCcCCccCHHHhcCC--CCCCEEECCCCcCceeChhhccCC-CCCC
Confidence 778889999998888887776554 7888888743221 11122222 345555555543222233355555 8899
Q ss_pred ceeeccccCcccccccccCCCCCCCccEEEEecCCccchhhcccCcc--cCCcCccccccccccccc-cccCCCCCCCCC
Q 041360 459 EIHLNELKGVQNAVHELDDGEGFPRLKHLRVESCSEILHIVGSVGRV--RRKVFPLLESLSLKKASF-VILHGQKPTAAS 535 (561)
Q Consensus 459 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~--~~~~~~~L~~L~l~~c~~-~~~~~~~~~~~l 535 (561)
.|+++++ .+..++.. ...+++|++|++.++ .++.++...-.. .....+.|+.|.+.+.|- .....+..+.++
T Consensus 244 ~L~L~~N-~l~~lp~~---l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~ 318 (330)
T 1xku_A 244 ELHLNNN-KLVKVPGG---LADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318 (330)
T ss_dssp EEECCSS-CCSSCCTT---TTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTC
T ss_pred EEECCCC-cCccCChh---hccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcccccccCccccccc
Confidence 9999875 45566654 457889999999984 677766332100 112357788888988886 222233446778
Q ss_pred CCCcccCCCcc
Q 041360 536 KGPEREKPTTS 546 (561)
Q Consensus 536 ~~L~~L~i~~c 546 (561)
.+++.+++.++
T Consensus 319 ~~l~~l~L~~N 329 (330)
T 1xku_A 319 YVRAAVQLGNY 329 (330)
T ss_dssp CCGGGEEC---
T ss_pred cceeEEEeccc
Confidence 88888887654
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.84 E-value=1.2e-19 Score=191.84 Aligned_cols=104 Identities=15% Similarity=0.248 Sum_probs=63.3
Q ss_pred CCceEEEccCCCccccCC-cc-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEE
Q 041360 223 KGPIAISLPHRDIQELPE-RL-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLC 300 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~ 300 (561)
++++++++++|.+..++. .+ .+++|++|+++++. +..+++..|+++++|++|++++|.++.+|.. .+.+|++|+
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNR--IQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC--CCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEE
T ss_pred ccccEEECCCCcccccChhhccccccccEEecCCCc--cCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEe
Confidence 556666666666655543 22 56666666666665 4444333346666666666666666666655 566666666
Q ss_pred eCCCCCCC---cccccCCCCCcEEEccCCcCcc
Q 041360 301 LGGCRLKD---IAIVGQLKKLEILSFRDSYIEE 330 (561)
Q Consensus 301 l~~~~l~~---p~~i~~L~~L~~L~l~~~~~~~ 330 (561)
+++|.+.. |..++++++|++|++++|.+..
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~ 129 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK 129 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccch
Confidence 66666543 3566666666666666665544
No 21
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.84 E-value=2.2e-20 Score=185.62 Aligned_cols=291 Identities=16% Similarity=0.154 Sum_probs=193.5
Q ss_pred CceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCC-chhhcCCCCCcEEEeC
Q 041360 224 GPIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSL-PSSLGRLFNLQTLCLG 302 (561)
Q Consensus 224 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l-p~~i~~L~~L~~L~l~ 302 (561)
+++.++++++.+..+|..+ .+++++|+++++. +..++...|+++++|++|++++|.+..+ |..++.+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~~ip~~~-~~~l~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI-SPDTTLLDLQNND--ISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC-CTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCccccCCCC-CCCCeEEECCCCc--CCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4677888888888887655 4688888888887 6666655568888889999888888886 6778888888999988
Q ss_pred CCCCCC-cccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhh
Q 041360 303 GCRLKD-IAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAEL 381 (561)
Q Consensus 303 ~~~l~~-p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 381 (561)
+|.+.. |..+. ++|++|++++|.+..+|. ..++++++|++|++++|...... .....+
T Consensus 111 ~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~-------------~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~ 169 (332)
T 2ft3_A 111 KNHLVEIPPNLP--SSLVELRIHDNRIRKVPK-------------GVFSGLRNMNCIEMGGNPLENSG------FEPGAF 169 (332)
T ss_dssp SSCCCSCCSSCC--TTCCEEECCSSCCCCCCS-------------GGGSSCSSCCEEECCSCCCBGGG------SCTTSS
T ss_pred CCcCCccCcccc--ccCCEEECCCCccCccCH-------------hHhCCCccCCEEECCCCccccCC------CCcccc
Confidence 888877 66555 788888888887776553 23677888888888887653110 112344
Q ss_pred cCCCCCcEEEEeeccCcccCcccccccccEEEEEeccccccCC--CCccccceEEEecCCccchhhhhhhHHHhhccccc
Q 041360 382 KGLSKLTTLEIQVRDAQILPQDLVLVELQRYKICIGEAWRMWG--VTSEISRLVRLHGLENVSTLLENYGMKMLLKEAEE 459 (561)
Q Consensus 382 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~l~~L~~~~~~~~~~~~~~~~~ll~~L~~ 459 (561)
..+ +|+.|+++.|.+..+|.... ++|+.|++..+. +.... ......++..|++.++......+..+..+ ++|+.
T Consensus 170 ~~l-~L~~L~l~~n~l~~l~~~~~-~~L~~L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~ 245 (332)
T 2ft3_A 170 DGL-KLNYLRISEAKLTGIPKDLP-ETLNELHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFL-PTLRE 245 (332)
T ss_dssp CSC-CCSCCBCCSSBCSSCCSSSC-SSCSCCBCCSSC-CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGC-TTCCE
T ss_pred cCC-ccCEEECcCCCCCccCcccc-CCCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCC-CCCCE
Confidence 555 78888888888777776543 678877774322 11111 11122344555555544222333455555 89999
Q ss_pred eeeccccCcccccccccCCCCCCCccEEEEecCCccchhhcccCc-c-cCCcCccccccccccccc-cccCCCCCCCCCC
Q 041360 460 IHLNELKGVQNAVHELDDGEGFPRLKHLRVESCSEILHIVGSVGR-V-RRKVFPLLESLSLKKASF-VILHGQKPTAASK 536 (561)
Q Consensus 460 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~-~-~~~~~~~L~~L~l~~c~~-~~~~~~~~~~~l~ 536 (561)
|+++++ .+..++.. ...+++|++|++++ +.++.++...-. . ....++.|+.|.+.++|. .....+..+.+++
T Consensus 246 L~L~~N-~l~~lp~~---l~~l~~L~~L~l~~-N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~ 320 (332)
T 2ft3_A 246 LHLDNN-KLSRVPAG---LPDLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVT 320 (332)
T ss_dssp EECCSS-CCCBCCTT---GGGCTTCCEEECCS-SCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBC
T ss_pred EECCCC-cCeecChh---hhcCccCCEEECCC-CCCCccChhHccccccccccccccceEeecCcccccccCcccccccc
Confidence 999975 45566655 34789999999998 467776632200 0 112267899999999986 2222333467788
Q ss_pred CCcccCCCccc
Q 041360 537 GPEREKPTTSL 547 (561)
Q Consensus 537 ~L~~L~i~~c~ 547 (561)
+|+.+.+.++.
T Consensus 321 ~L~~l~l~~n~ 331 (332)
T 2ft3_A 321 DRLAIQFGNYK 331 (332)
T ss_dssp CSTTEEC----
T ss_pred hhhhhhccccc
Confidence 88888887764
No 22
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.83 E-value=7.4e-20 Score=189.37 Aligned_cols=290 Identities=13% Similarity=0.095 Sum_probs=179.4
Q ss_pred CCceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeC
Q 041360 223 KGPIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLG 302 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~ 302 (561)
.++++++++++.+..+|....+++|++|+++++. +..+| ++.+++|++|++++|.++.+| ++.+++|++|+++
T Consensus 42 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~--l~~~~---~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~ 114 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNN--ITTLD---LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCD 114 (457)
T ss_dssp TTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSC--CSCCC---CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECC
T ss_pred CCCCEEEccCCCcccChhhcccCCCCEEEccCCc--CCeEc---cccCCCCCEEECcCCCCceee--cCCCCcCCEEECC
Confidence 6788999999888888744478899999999887 66665 588899999999999888875 8888999999999
Q ss_pred CCCCCCcccccCCCCCcEEEccCCcCcccChhhhcccccccc--------CchhhcCCCCCcEEEccCCcccccccCCCc
Q 041360 303 GCRLKDIAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVI--------APNLISKFSQLEELYMGDSFSQWDKVEGGS 374 (561)
Q Consensus 303 ~~~l~~p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l--------~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 374 (561)
+|.++..+ ++.+++|++|++++|.+..+| ++++++|+.+ ....++.+++|++|++++|.... .
T Consensus 115 ~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l----- 185 (457)
T 3bz5_A 115 TNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-L----- 185 (457)
T ss_dssp SSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-C-----
T ss_pred CCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-e-----
Confidence 99888732 888889999999988888775 5555555222 11125677888888888775431 1
Q ss_pred ccchHhhcCCCCCcEEEEeeccCcccCcccccccccEEEEEeccccccCCCCccccceEEEecCCccchhhhhhhHHHh-
Q 041360 375 NASLAELKGLSKLTTLEIQVRDAQILPQDLVLVELQRYKICIGEAWRMWGVTSEISRLVRLHGLENVSTLLENYGMKML- 453 (561)
Q Consensus 375 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~l- 453 (561)
.+..+++|+.|+++.|.++.++ ...+++|+.|++..+. +.. ++.....++..|++.++......+..+..+
T Consensus 186 -----~l~~l~~L~~L~l~~N~l~~~~-l~~l~~L~~L~Ls~N~-l~~-ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~ 257 (457)
T 3bz5_A 186 -----DVSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNK-LTE-IDVTPLTQLTYFDCSVNPLTELDVSTLSKLT 257 (457)
T ss_dssp -----CCTTCTTCCEEECCSSCCSCCC-CTTCTTCSEEECCSSC-CSC-CCCTTCTTCSEEECCSSCCSCCCCTTCTTCC
T ss_pred -----ccccCCCCCEEECcCCcCCeec-cccCCCCCEEECcCCc-ccc-cCccccCCCCEEEeeCCcCCCcCHHHCCCCC
Confidence 1556667777777777666553 3356667777664321 211 112233344555554433111111111111
Q ss_pred -----hccccceeeccccCcccccccccCCCCCCCccEEEEecCCccchhhcccCc---ccCCcCccccccccccccccc
Q 041360 454 -----LKEAEEIHLNELKGVQNAVHELDDGEGFPRLKHLRVESCSEILHIVGSVGR---VRRKVFPLLESLSLKKASFVI 525 (561)
Q Consensus 454 -----l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~---~~~~~~~~L~~L~l~~c~~~~ 525 (561)
..+|+.|++.++.....++ .+.+++|+.|++++|..++.+|..... ......++|+.|.+.++. +
T Consensus 258 ~L~l~~n~L~~L~l~~n~~~~~~~-----~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~--l 330 (457)
T 3bz5_A 258 TLHCIQTDLLEIDLTHNTQLIYFQ-----AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE--L 330 (457)
T ss_dssp EEECTTCCCSCCCCTTCTTCCEEE-----CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC--C
T ss_pred EEeccCCCCCEEECCCCccCCccc-----ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCc--c
Confidence 0134445555544333333 346788888888888777777632111 122333444444444443 2
Q ss_pred cCCCCCCCCCCCCcccCCCc
Q 041360 526 LHGQKPTAASKGPEREKPTT 545 (561)
Q Consensus 526 ~~~~~~~~~l~~L~~L~i~~ 545 (561)
. + +++..+++|+.|++.+
T Consensus 331 ~-~-l~l~~l~~L~~L~l~~ 348 (457)
T 3bz5_A 331 T-E-LDVSHNTKLKSLSCVN 348 (457)
T ss_dssp S-C-CCCTTCTTCSEEECCS
T ss_pred c-c-cccccCCcCcEEECCC
Confidence 1 1 2466677777776644
No 23
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.83 E-value=2.1e-20 Score=185.14 Aligned_cols=213 Identities=16% Similarity=0.168 Sum_probs=140.8
Q ss_pred CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeCCCCCCC-cccccCCCCCcEE
Q 041360 243 QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLGGCRLKD-IAIVGQLKKLEIL 321 (561)
Q Consensus 243 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~-p~~i~~L~~L~~L 321 (561)
..++++.|+++++. +..+|..+ +++++|++|++++|.+..+|..++.+.+|++|++++|.+.. |..++++++|++|
T Consensus 79 ~~~~l~~L~L~~n~--l~~lp~~l-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L 155 (328)
T 4fcg_A 79 TQPGRVALELRSVP--LPQFPDQA-FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLREL 155 (328)
T ss_dssp TSTTCCEEEEESSC--CSSCCSCG-GGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEE
T ss_pred cccceeEEEccCCC--chhcChhh-hhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEE
Confidence 45788999999987 66888876 66899999999999988889889999999999999998888 8889999999999
Q ss_pred EccCC-cCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhcCCCCCcEEEEeeccCccc
Q 041360 322 SFRDS-YIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIQVRDAQIL 400 (561)
Q Consensus 322 ~l~~~-~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 400 (561)
++++| .+..+|..++... ++. .++++++|++|++++|... .++ ..++++++|+.|+++.|.+..+
T Consensus 156 ~L~~n~~~~~~p~~~~~~~----~~~-~~~~l~~L~~L~L~~n~l~-~lp--------~~l~~l~~L~~L~L~~N~l~~l 221 (328)
T 4fcg_A 156 SIRACPELTELPEPLASTD----ASG-EHQGLVNLQSLRLEWTGIR-SLP--------ASIANLQNLKSLKIRNSPLSAL 221 (328)
T ss_dssp EEEEETTCCCCCSCSEEEC-----CC-CEEESTTCCEEEEEEECCC-CCC--------GGGGGCTTCCEEEEESSCCCCC
T ss_pred ECCCCCCccccChhHhhcc----chh-hhccCCCCCEEECcCCCcC-cch--------HhhcCCCCCCEEEccCCCCCcC
Confidence 99886 4556676554422 111 1556777888887777553 222 4567777777777777776655
Q ss_pred Cccc-ccccccEEEEEeccccccCCCCccccceEEEecCCccchhhhhhhHHHhhccccceeeccccCcccccccccCCC
Q 041360 401 PQDL-VLVELQRYKICIGEAWRMWGVTSEISRLVRLHGLENVSTLLENYGMKMLLKEAEEIHLNELKGVQNAVHELDDGE 479 (561)
Q Consensus 401 ~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~ll~~L~~L~l~~~~~~~~~~~~~~~~~ 479 (561)
|..+ .+++|+.|++..+... ...+..+..+ ++|+.|++.+|.....++.. .+
T Consensus 222 ~~~l~~l~~L~~L~Ls~n~~~-----------------------~~~p~~~~~l-~~L~~L~L~~n~~~~~~p~~---~~ 274 (328)
T 4fcg_A 222 GPAIHHLPKLEELDLRGCTAL-----------------------RNYPPIFGGR-APLKRLILKDCSNLLTLPLD---IH 274 (328)
T ss_dssp CGGGGGCTTCCEEECTTCTTC-----------------------CBCCCCTTCC-CCCCEEECTTCTTCCBCCTT---GG
T ss_pred chhhccCCCCCEEECcCCcch-----------------------hhhHHHhcCC-CCCCEEECCCCCchhhcchh---hh
Confidence 5432 4555555555322110 0111122222 55666666665555555543 23
Q ss_pred CCCCccEEEEecCCccchhh
Q 041360 480 GFPRLKHLRVESCSEILHIV 499 (561)
Q Consensus 480 ~~~~L~~L~l~~c~~l~~l~ 499 (561)
.+++|++|+|++|+.++.+|
T Consensus 275 ~l~~L~~L~L~~n~~~~~iP 294 (328)
T 4fcg_A 275 RLTQLEKLDLRGCVNLSRLP 294 (328)
T ss_dssp GCTTCCEEECTTCTTCCCCC
T ss_pred cCCCCCEEeCCCCCchhhcc
Confidence 55666666666666555555
No 24
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=1.9e-20 Score=201.11 Aligned_cols=275 Identities=13% Similarity=0.138 Sum_probs=205.0
Q ss_pred CccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCc-hhhcCCCCCcEEEeCCCCCCC-c-ccccCCC
Q 041360 240 ERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLP-SSLGRLFNLQTLCLGGCRLKD-I-AIVGQLK 316 (561)
Q Consensus 240 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~l~~-p-~~i~~L~ 316 (561)
..+.+++++.+++.++. +..+|..+|+++++|++|++++|.+..+| ..++.+.+|++|+|++|.+.. | ..+++++
T Consensus 46 ~~l~l~~l~~l~l~~~~--l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 123 (597)
T 3oja_B 46 EDITLNNQKIVTFKNST--MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123 (597)
T ss_dssp SSGGGCCCSEEEESSCE--ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccccCCCceEEEeeCCC--CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC
Confidence 34468899999999987 88999998999999999999999999975 489999999999999999988 4 6689999
Q ss_pred CCcEEEccCCcCcccChhh-hccccc----------cccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhcCCC
Q 041360 317 KLEILSFRDSYIEELPHEI-GQLTRL----------VVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLS 385 (561)
Q Consensus 317 ~L~~L~l~~~~~~~lp~~i-~~L~~L----------~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~ 385 (561)
+|++|++++|.+..+|..+ +++++| ..+++..++++++|++|++++|..... .+..++
T Consensus 124 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-----------~~~~l~ 192 (597)
T 3oja_B 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-----------DLSLIP 192 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-----------CGGGCT
T ss_pred CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-----------Chhhhh
Confidence 9999999999999998764 666666 344444577888888888888765311 245567
Q ss_pred CCcEEEEeeccCcccCcccccccccEEEEEeccccccCCCCccccceEEEecCCccchhhhhhhHHHhhccccceeeccc
Q 041360 386 KLTTLEIQVRDAQILPQDLVLVELQRYKICIGEAWRMWGVTSEISRLVRLHGLENVSTLLENYGMKMLLKEAEEIHLNEL 465 (561)
Q Consensus 386 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~ll~~L~~L~l~~~ 465 (561)
+|+.|+++.|.+..++ .+.+|+.|++..+. +.... .....++..|++.++. ...+.++..+ ++|+.|+++++
T Consensus 193 ~L~~L~l~~n~l~~l~---~~~~L~~L~ls~n~-l~~~~-~~~~~~L~~L~L~~n~--l~~~~~l~~l-~~L~~L~Ls~N 264 (597)
T 3oja_B 193 SLFHANVSYNLLSTLA---IPIAVEELDASHNS-INVVR-GPVNVELTILKLQHNN--LTDTAWLLNY-PGLVEVDLSYN 264 (597)
T ss_dssp TCSEEECCSSCCSEEE---CCTTCSEEECCSSC-CCEEE-CSCCSCCCEEECCSSC--CCCCGGGGGC-TTCSEEECCSS
T ss_pred hhhhhhcccCcccccc---CCchhheeeccCCc-ccccc-cccCCCCCEEECCCCC--CCCChhhccC-CCCCEEECCCC
Confidence 8888888877766543 44578888774332 21111 1122456667776543 2224556665 99999999986
Q ss_pred cCcccccccccCCCCCCCccEEEEecCCccchhhcccCcccCCcCccccccccccccc-cccCCCCCCCCCCCCcccCCC
Q 041360 466 KGVQNAVHELDDGEGFPRLKHLRVESCSEILHIVGSVGRVRRKVFPLLESLSLKKASF-VILHGQKPTAASKGPEREKPT 544 (561)
Q Consensus 466 ~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~c~~-~~~~~~~~~~~l~~L~~L~i~ 544 (561)
.-....+.. ...+++|++|+++++ +++.++ .....+|+|+.|++.+|+- .++. .+..+++|+.|++.
T Consensus 265 ~l~~~~~~~---~~~l~~L~~L~Ls~N-~l~~l~-----~~~~~l~~L~~L~Ls~N~l~~i~~---~~~~l~~L~~L~L~ 332 (597)
T 3oja_B 265 ELEKIMYHP---FVKMQRLERLYISNN-RLVALN-----LYGQPIPTLKVLDLSHNHLLHVER---NQPQFDRLENLYLD 332 (597)
T ss_dssp CCCEEESGG---GTTCSSCCEEECTTS-CCCEEE-----CSSSCCTTCCEEECCSSCCCCCGG---GHHHHTTCSEEECC
T ss_pred ccCCCCHHH---hcCccCCCEEECCCC-CCCCCC-----cccccCCCCcEEECCCCCCCccCc---ccccCCCCCEEECC
Confidence 543333443 457999999999994 777777 3346799999999999985 4432 25678899999998
Q ss_pred ccc
Q 041360 545 TSL 547 (561)
Q Consensus 545 ~c~ 547 (561)
+|.
T Consensus 333 ~N~ 335 (597)
T 3oja_B 333 HNS 335 (597)
T ss_dssp SSC
T ss_pred CCC
Confidence 875
No 25
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.83 E-value=2.4e-20 Score=206.17 Aligned_cols=301 Identities=16% Similarity=0.113 Sum_probs=143.4
Q ss_pred CceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCC-CchhhcCCCCCcEEEeC
Q 041360 224 GPIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSS-LPSSLGRLFNLQTLCLG 302 (561)
Q Consensus 224 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~-lp~~i~~L~~L~~L~l~ 302 (561)
+++++++++|.+........+++|++|+++++. ....+|. ++++++|++|++++|.+.. +|..++.+++|++|+++
T Consensus 179 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~--l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls 255 (768)
T 3rgz_A 179 ELKHLAISGNKISGDVDVSRCVNLEFLDVSSNN-FSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNIS 255 (768)
T ss_dssp TCCEEECCSSEEESCCBCTTCTTCCEEECCSSC-CCSCCCB--CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECC
T ss_pred CCCEEECCCCcccccCCcccCCcCCEEECcCCc-CCCCCcc--cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECC
Confidence 344444444444332222345555555555554 2222332 3555566666666555553 35555555556666665
Q ss_pred CCCCCC-cccccCCCCCcEEEccCCcCc-ccChhhhcc-ccc-----------cccCchhhcCCCCCcEEEccCCccccc
Q 041360 303 GCRLKD-IAIVGQLKKLEILSFRDSYIE-ELPHEIGQL-TRL-----------VVIAPNLISKFSQLEELYMGDSFSQWD 368 (561)
Q Consensus 303 ~~~l~~-p~~i~~L~~L~~L~l~~~~~~-~lp~~i~~L-~~L-----------~~l~~~~i~~l~~L~~L~l~~~~~~~~ 368 (561)
+|.+.. .+.. .+++|++|++++|.+. .+|..++.+ ++| ..+|. .++++++|++|++++|.....
T Consensus 256 ~n~l~~~~~~~-~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~ 333 (768)
T 3rgz_A 256 SNQFVGPIPPL-PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP-FFGSCSLLESLALSSNNFSGE 333 (768)
T ss_dssp SSCCEESCCCC-CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCG-GGGGCTTCCEEECCSSEEEEE
T ss_pred CCcccCccCcc-ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccch-HHhcCCCccEEECCCCcccCc
Confidence 555443 2222 4555555555555444 445544332 333 12232 256666666666666654322
Q ss_pred ccCCCcccchHhhcCCCCCcEEEEeeccCc-ccCccc-ccc-cccEEEEEecc---ccccCCCCccccceE---------
Q 041360 369 KVEGGSNASLAELKGLSKLTTLEIQVRDAQ-ILPQDL-VLV-ELQRYKICIGE---AWRMWGVTSEISRLV--------- 433 (561)
Q Consensus 369 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~-~L~~L~l~~~~---~~~~~~~~~~~~~l~--------- 433 (561)
.+ ...+.++++|+.|+++.|.+. .+|..+ .++ +|+.|++..+. ..+.+.......++.
T Consensus 334 ip-------~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l 406 (768)
T 3rgz_A 334 LP-------MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406 (768)
T ss_dssp CC-------HHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEE
T ss_pred CC-------HHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCcc
Confidence 22 123566666666666666554 333332 232 45555553211 111111111122233
Q ss_pred ---------------EEecCCccchhhhhhhHHHhhccccceeeccccCcccccccccCCCCCCCccEEEEecCCccchh
Q 041360 434 ---------------RLHGLENVSTLLENYGMKMLLKEAEEIHLNELKGVQNAVHELDDGEGFPRLKHLRVESCSEILHI 498 (561)
Q Consensus 434 ---------------~L~~~~~~~~~~~~~~~~~ll~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l 498 (561)
.|++.+|......+..+..+ ++|+.|++.++.-...++.. ...+++|++|++.+|.--..+
T Consensus 407 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~p~~---~~~l~~L~~L~L~~N~l~~~~ 482 (768)
T 3rgz_A 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL-SKLRDLKLWLNMLEGEIPQE---LMYVKTLETLILDFNDLTGEI 482 (768)
T ss_dssp EEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC-TTCCEEECCSSCCCSCCCGG---GGGCTTCCEEECCSSCCCSCC
T ss_pred ccccCHHHhcCCCCCEEECcCCcccCcccHHHhcC-CCCCEEECCCCcccCcCCHH---HcCCCCceEEEecCCcccCcC
Confidence 33333322122233344443 55555555554333333333 234566666666664322233
Q ss_pred hcccCcccCCcCccccccccccccc-cccCCCCCCCCCCCCcccCCCccc
Q 041360 499 VGSVGRVRRKVFPLLESLSLKKASF-VILHGQKPTAASKGPEREKPTTSL 547 (561)
Q Consensus 499 ~~~~~~~~~~~~~~L~~L~l~~c~~-~~~~~~~~~~~l~~L~~L~i~~c~ 547 (561)
|. ....+++|+.|++.+|.- .. .+..++.+++|+.|++.+|.
T Consensus 483 p~-----~l~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~L~~N~ 525 (768)
T 3rgz_A 483 PS-----GLSNCTNLNWISLSNNRLTGE--IPKWIGRLENLAILKLSNNS 525 (768)
T ss_dssp CG-----GGGGCTTCCEEECCSSCCCSC--CCGGGGGCTTCCEEECCSSC
T ss_pred CH-----HHhcCCCCCEEEccCCccCCc--CChHHhcCCCCCEEECCCCc
Confidence 31 235667777777777764 11 12235677888888887774
No 26
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.83 E-value=1.2e-19 Score=193.25 Aligned_cols=308 Identities=18% Similarity=0.160 Sum_probs=180.8
Q ss_pred CCceEEEccCCCccccCC-cc-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchh-hcCCCCCcEE
Q 041360 223 KGPIAISLPHRDIQELPE-RL-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSS-LGRLFNLQTL 299 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~-i~~L~~L~~L 299 (561)
++++++++++|.+..++. .+ .+++|++|+++++. +..++...|+++++|++|++++|.+..+|+. ++.+++|++|
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 103 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR--INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYL 103 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEE
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCC--cCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEE
Confidence 678889998888877653 34 78889999998887 6666655568888899999998888887654 8888889999
Q ss_pred EeCCCCCCC---cccccCCCCCcEEEccCCc-CcccC-hhhhccccccc----------cCchhhcCCCCCcEEEccCCc
Q 041360 300 CLGGCRLKD---IAIVGQLKKLEILSFRDSY-IEELP-HEIGQLTRLVV----------IAPNLISKFSQLEELYMGDSF 364 (561)
Q Consensus 300 ~l~~~~l~~---p~~i~~L~~L~~L~l~~~~-~~~lp-~~i~~L~~L~~----------l~~~~i~~l~~L~~L~l~~~~ 364 (561)
++++|.+.. |..++++++|++|++++|. +..+| ..++++++|+. ..+..++++++|++|++++|.
T Consensus 104 ~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 183 (549)
T 2z81_A 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183 (549)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred ECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence 998888764 5678888888888888886 66666 35666666621 122236667777777766654
Q ss_pred ccccccCCCcccchHhhcCCCCCcEEEEeeccCcccCc-----ccccccccEEE--------------------------
Q 041360 365 SQWDKVEGGSNASLAELKGLSKLTTLEIQVRDAQILPQ-----DLVLVELQRYK-------------------------- 413 (561)
Q Consensus 365 ~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-----~~~~~~L~~L~-------------------------- 413 (561)
..... ...+..+++|+.|+++.|.+...+. ...+++|+.|+
T Consensus 184 ~~~~~--------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~ 255 (549)
T 2z81_A 184 SAFLL--------EIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255 (549)
T ss_dssp STTHH--------HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCE
T ss_pred ccccc--------hhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccc
Confidence 32100 0122345666666666665544310 01222333333
Q ss_pred --EEecc-----------------------------ccccCCC--C-----ccccceEEEecCCccchhhhhhhHHHhhc
Q 041360 414 --ICIGE-----------------------------AWRMWGV--T-----SEISRLVRLHGLENVSTLLENYGMKMLLK 455 (561)
Q Consensus 414 --l~~~~-----------------------------~~~~~~~--~-----~~~~~l~~L~~~~~~~~~~~~~~~~~ll~ 455 (561)
+..+. .++.+.. . ....++..|++.++. ....+.++..-++
T Consensus 256 l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~-l~~ip~~~~~~l~ 334 (549)
T 2z81_A 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLK 334 (549)
T ss_dssp EEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC-CCCCCHHHHHHCT
T ss_pred cccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc-cccCCHHHHhcCc
Confidence 22110 0000000 0 000123334443333 2334445432238
Q ss_pred cccceeeccccCcccccccccCCCCCCCccEEEEecCCccchhhcccCcccCCcCccccccccccccc-cccCCCCCCCC
Q 041360 456 EAEEIHLNELKGVQNAVHELDDGEGFPRLKHLRVESCSEILHIVGSVGRVRRKVFPLLESLSLKKASF-VILHGQKPTAA 534 (561)
Q Consensus 456 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~c~~-~~~~~~~~~~~ 534 (561)
+|+.|+++++.-....+......+.+++|++|++++| +++.++... .....+++|+.|++.+|.- .++. .+..
T Consensus 335 ~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~--~~~~~l~~L~~L~Ls~N~l~~lp~---~~~~ 408 (549)
T 2z81_A 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTG--EILLTLKNLTSLDISRNTFHPMPD---SCQW 408 (549)
T ss_dssp TCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHH--HHGGGCTTCCEEECTTCCCCCCCS---CCCC
T ss_pred cccEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccch--hhhhcCCCCCEEECCCCCCccCCh---hhcc
Confidence 8888888876544333221100356788888888874 565554110 0135677777777777753 3322 2455
Q ss_pred CCCCcccCCCccc
Q 041360 535 SKGPEREKPTTSL 547 (561)
Q Consensus 535 l~~L~~L~i~~c~ 547 (561)
+++|+.|++.+|.
T Consensus 409 ~~~L~~L~Ls~N~ 421 (549)
T 2z81_A 409 PEKMRFLNLSSTG 421 (549)
T ss_dssp CTTCCEEECTTSC
T ss_pred cccccEEECCCCC
Confidence 6666666666654
No 27
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.83 E-value=6.6e-20 Score=196.23 Aligned_cols=115 Identities=17% Similarity=0.247 Sum_probs=89.1
Q ss_pred CCceEEEccCCCccccCCc-c-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCch-hhcCCCCCcEE
Q 041360 223 KGPIAISLPHRDIQELPER-L-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPS-SLGRLFNLQTL 299 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~-~i~~L~~L~~L 299 (561)
.+++++++++|.+..++.. + .+++|++|+++++. +..++...|+++++|++|++++|.+..+|. .++.+.+|++|
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 129 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP--IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129 (570)
T ss_dssp SSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC--CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEE
T ss_pred CCceEEECCCCcCCccCcccccCchhCCEEeCcCCc--CCccCHhhhcCccccccccccccccccCCCccccccccccEE
Confidence 6788888888888777654 3 78888999998886 666765556888888888888888888765 68888888888
Q ss_pred EeCCCCCCC---cccccCCCCCcEEEccCCcCcccC-hhhhccc
Q 041360 300 CLGGCRLKD---IAIVGQLKKLEILSFRDSYIEELP-HEIGQLT 339 (561)
Q Consensus 300 ~l~~~~l~~---p~~i~~L~~L~~L~l~~~~~~~lp-~~i~~L~ 339 (561)
++++|.+.. |..++++++|++|++++|.+..++ ..++.++
T Consensus 130 ~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 173 (570)
T 2z63_A 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLH 173 (570)
T ss_dssp ECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHH
T ss_pred ecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchh
Confidence 888888664 678888888888888888777654 3344333
No 28
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.83 E-value=2.6e-20 Score=205.86 Aligned_cols=136 Identities=21% Similarity=0.238 Sum_probs=71.7
Q ss_pred CCccEEEecCCCCC-CCchhhcCCCCCcEEEeCCCCCCC--cccccCCCCCcEEEccCCcCc-ccChhhhccccc-----
Q 041360 271 EEVKVLSLTGVRFS-SLPSSLGRLFNLQTLCLGGCRLKD--IAIVGQLKKLEILSFRDSYIE-ELPHEIGQLTRL----- 341 (561)
Q Consensus 271 ~~Lr~L~l~~~~i~-~lp~~i~~L~~L~~L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~~~-~lp~~i~~L~~L----- 341 (561)
++|++|++++|.+. .+|..++.+++|++|++++|.+.. |..++.+++|++|++++|.+. .+|..++.+++|
T Consensus 394 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 473 (768)
T 3rgz_A 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473 (768)
T ss_dssp CCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred CCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe
Confidence 34444444444443 245555555566666666555543 455555566666666555554 445555555444
Q ss_pred ------cccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhcCCCCCcEEEEeeccCc-ccCccc-ccccccEEE
Q 041360 342 ------VVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIQVRDAQ-ILPQDL-VLVELQRYK 413 (561)
Q Consensus 342 ------~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~ 413 (561)
..+|. .++++++|++|++++|......+ ..++.+++|+.|+++.|.+. .+|..+ .+++|+.|+
T Consensus 474 ~~N~l~~~~p~-~l~~l~~L~~L~L~~N~l~~~~p--------~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 544 (768)
T 3rgz_A 474 DFNDLTGEIPS-GLSNCTNLNWISLSNNRLTGEIP--------KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544 (768)
T ss_dssp CSSCCCSCCCG-GGGGCTTCCEEECCSSCCCSCCC--------GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE
T ss_pred cCCcccCcCCH-HHhcCCCCCEEEccCCccCCcCC--------hHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE
Confidence 12232 25556666666666655433222 44555666666666666654 334332 556666666
Q ss_pred EE
Q 041360 414 IC 415 (561)
Q Consensus 414 l~ 415 (561)
+.
T Consensus 545 Ls 546 (768)
T 3rgz_A 545 LN 546 (768)
T ss_dssp CC
T ss_pred CC
Confidence 63
No 29
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.83 E-value=1.6e-20 Score=202.57 Aligned_cols=160 Identities=17% Similarity=0.239 Sum_probs=131.1
Q ss_pred CEEeeccchhhhcccCCcceEecC------CCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHcCCChHHHHHHHHHHc
Q 041360 1 MILTSRNRDLLERDMNSQKNFLIE------VLSKEEALQLFENILGDSTKTSTIQPIADEIVKRCGGLPVAVTTVANALK 74 (561)
Q Consensus 1 IlvTTR~~~va~~~~~~~~~~~l~------~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~ 74 (561)
||||||++.++.. +....+|+++ +|+.+|||+||++..+.. ..+++.++ |+|+||||+++|+.|+
T Consensus 268 ILVTTRd~~Va~~-l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr 338 (1221)
T 1vt4_I 268 ILLTTRFKQVTDF-LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR-----PQDLPREV---LTTNPRRLSIIAESIR 338 (1221)
T ss_dssp EEEECSCSHHHHH-HHHHSSCEEEECSSSSCCCHHHHHHHHHHHHCCC-----TTTHHHHH---CCCCHHHHHHHHHHHH
T ss_pred EEEeccChHHHHh-cCCCeEEEecCccccCCcCHHHHHHHHHHHcCCC-----HHHHHHHH---hCCCHHHHHHHHHHHh
Confidence 7999999999742 2333467777 999999999999996432 23445444 9999999999999999
Q ss_pred CC--CHHHHHHHHHHHhhCCCCCCCCchhhHHHHHHHHHHhcCChHH-HHHHHhhcccCCCcccCHHHHHHHHhhcCccc
Q 041360 75 SK--SLDIWKDALSQLRSSNPREIDGMDKNVYTSIELSYNLLASKEA-KSLFRLCGLYNEGHAIQVASLLRYGMGWGLFK 151 (561)
Q Consensus 75 ~~--~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~-k~cfl~~s~fp~~~~~~~~~l~~~w~a~g~~~ 151 (561)
.+ +..+|+.. ....+..++.+||+.||++ . |.||+|||+||+++.|..+.++.+|+++|.
T Consensus 339 ~k~~s~eeW~~~--------------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPed~~I~~elLa~LW~aeGe-- 401 (1221)
T 1vt4_I 339 DGLATWDNWKHV--------------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-- 401 (1221)
T ss_dssp HSCSSHHHHHHC--------------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCS--
T ss_pred CCCCCHHHHhcC--------------ChhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCH--
Confidence 76 77888753 1467999999999999997 8 999999999999999999999999999871
Q ss_pred ccccHHHHHHHHHHHHHHHHHcCcccccCCCCceehhHHHHHHH
Q 041360 152 NVYTLEEARSRVHRLIDNLKSSCLLLDGDGKDEVKMHDVIHVVA 195 (561)
Q Consensus 152 ~~~~~~~~~~~~~~~i~~L~~~sll~~~~~~~~~~mh~lv~~~~ 195 (561)
+ .+.+++++|+++||++..+....|+|||++++++
T Consensus 402 -----e----dAe~~L~eLvdRSLLq~d~~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 402 -----S----DVMVVVNKLHKYSLVEKQPKESTISIPSIYLELK 436 (1221)
T ss_dssp -----H----HHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHHHH
T ss_pred -----H----HHHHHHHHHHhhCCEEEeCCCCEEEehHHHHHHh
Confidence 1 2445889999999998765567899999998854
No 30
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.82 E-value=2.1e-19 Score=193.74 Aligned_cols=184 Identities=16% Similarity=0.179 Sum_probs=106.3
Q ss_pred CCceEEEccCCCcccc--CCccCCCCccEEEeeccCCCCccccHHHHcCCCCcc--EEEecCCCCCCCchhhcCCC----
Q 041360 223 KGPIAISLPHRDIQEL--PERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVK--VLSLTGVRFSSLPSSLGRLF---- 294 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr--~L~l~~~~i~~lp~~i~~L~---- 294 (561)
.+++++++++|.+..+ |....+++|++|+++++. +..++...|+.+++|+ .|++++|.+..+++......
T Consensus 129 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~ 206 (606)
T 3t6q_A 129 KTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA--IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQS 206 (606)
T ss_dssp TTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSC--CCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEE
T ss_pred CcccEEECCCCcccccCcccccCCcccCEEEcccCc--ccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccc
Confidence 4677777777777654 444467777777777775 5555555557777777 66777766655433221111
Q ss_pred ------------------------------------------------CCcEEEeCCCCCCC-c-ccccCCCCCcEEEcc
Q 041360 295 ------------------------------------------------NLQTLCLGGCRLKD-I-AIVGQLKKLEILSFR 324 (561)
Q Consensus 295 ------------------------------------------------~L~~L~l~~~~l~~-p-~~i~~L~~L~~L~l~ 324 (561)
+|++|++++|.+.. + ..++.+++|++|+++
T Consensus 207 L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 286 (606)
T 3t6q_A 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT 286 (606)
T ss_dssp EECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECT
T ss_pred cccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEecc
Confidence 45555555555555 2 446677777777777
Q ss_pred CCcCcccChhhhccccc----------cccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhcCCCCCcEEEEee
Q 041360 325 DSYIEELPHEIGQLTRL----------VVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIQV 394 (561)
Q Consensus 325 ~~~~~~lp~~i~~L~~L----------~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~ 394 (561)
+|.+..+|.+++++++| ..+++..++++++|++|++++|......+. ..+..+++|+.|+++.
T Consensus 287 ~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-------~~~~~l~~L~~L~l~~ 359 (606)
T 3t6q_A 287 ATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT-------GCLENLENLRELDLSH 359 (606)
T ss_dssp TSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS-------STTTTCTTCCEEECCS
T ss_pred CCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccch-------hhhhccCcCCEEECCC
Confidence 77777777766666655 223333466677777777776654322221 2245555666666665
Q ss_pred ccCcccC---c-ccccccccEEEEE
Q 041360 395 RDAQILP---Q-DLVLVELQRYKIC 415 (561)
Q Consensus 395 ~~~~~~~---~-~~~~~~L~~L~l~ 415 (561)
|.+...+ . ...+++|+.|++.
T Consensus 360 n~l~~~~~~~~~~~~l~~L~~L~l~ 384 (606)
T 3t6q_A 360 DDIETSDCCNLQLRNLSHLQSLNLS 384 (606)
T ss_dssp SCCCEEEESTTTTTTCTTCCEEECC
T ss_pred CccccccCcchhcccCCCCCEEECC
Confidence 5554432 1 1245555655553
No 31
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=1.9e-20 Score=185.44 Aligned_cols=216 Identities=19% Similarity=0.242 Sum_probs=128.6
Q ss_pred CCceEEEccCCCccccCCcc-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEe
Q 041360 223 KGPIAISLPHRDIQELPERL-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCL 301 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l 301 (561)
.+++.++++++.+..+|..+ .+++|++|+++++. +..+|..+ +++++|++|++++|.+..+|..++.+++|++|++
T Consensus 81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~--l~~lp~~~-~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG--LMELPDTM-QQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSC--CCCCCSCG-GGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCchhcChhhhhCCCCCEEECCCCC--ccchhHHH-hccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 56677777777777666655 56777777777766 44666554 6677777777777777777777777777777777
Q ss_pred CCCCC-CC-cccccC---------CCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCccccccc
Q 041360 302 GGCRL-KD-IAIVGQ---------LKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKV 370 (561)
Q Consensus 302 ~~~~l-~~-p~~i~~---------L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~ 370 (561)
++|.+ .. |..++. +++|++|++++|.+..+|.. ++++++|++|++++|.... .
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~--------------l~~l~~L~~L~L~~N~l~~-l- 221 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPAS--------------IANLQNLKSLKIRNSPLSA-L- 221 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGG--------------GGGCTTCCEEEEESSCCCC-C-
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHh--------------hcCCCCCCEEEccCCCCCc-C-
Confidence 77653 33 544443 67777777777766555532 4556666677776665431 1
Q ss_pred CCCcccchHhhcCCCCCcEEEEeeccCc-ccCccc-ccccccEEEEEeccccccCCCCccccceEEEecCCccchhhhhh
Q 041360 371 EGGSNASLAELKGLSKLTTLEIQVRDAQ-ILPQDL-VLVELQRYKICIGEAWRMWGVTSEISRLVRLHGLENVSTLLENY 448 (561)
Q Consensus 371 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~ 448 (561)
...+..+++|+.|+++.|... .+|..+ .+++|+.|++..+.. ....+.
T Consensus 222 -------~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~-----------------------~~~~p~ 271 (328)
T 4fcg_A 222 -------GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN-----------------------LLTLPL 271 (328)
T ss_dssp -------CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTT-----------------------CCBCCT
T ss_pred -------chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCc-----------------------hhhcch
Confidence 134666677777777765443 333322 455566555532211 111222
Q ss_pred hHHHhhccccceeeccccCcccccccccCCCCCCCccEEEEec
Q 041360 449 GMKMLLKEAEEIHLNELKGVQNAVHELDDGEGFPRLKHLRVES 491 (561)
Q Consensus 449 ~~~~ll~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 491 (561)
++..+ ++|+.|++++|+....+|.. .+.+++|+.+.+..
T Consensus 272 ~~~~l-~~L~~L~L~~n~~~~~iP~~---l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 272 DIHRL-TQLEKLDLRGCVNLSRLPSL---IAQLPANCIILVPP 310 (328)
T ss_dssp TGGGC-TTCCEEECTTCTTCCCCCGG---GGGSCTTCEEECCG
T ss_pred hhhcC-CCCCEEeCCCCCchhhccHH---HhhccCceEEeCCH
Confidence 33333 66777777776666666655 33566666666553
No 32
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.82 E-value=1.1e-19 Score=192.18 Aligned_cols=111 Identities=14% Similarity=0.160 Sum_probs=69.3
Q ss_pred eEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCC-chhhcCCCCCcEEEeCCC
Q 041360 226 IAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSL-PSSLGRLFNLQTLCLGGC 304 (561)
Q Consensus 226 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~ 304 (561)
++++++++.+..+|..+. ++|++|+++++. +..++...|+++++|++|++++|.+..+ |..++.+++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNY--ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSC--CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCc--ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 456666666666665444 666666666665 5555544456666666666666666665 556666666666666666
Q ss_pred CCCC-cccccCCCCCcEEEccCCcCcc--cChhhhccccc
Q 041360 305 RLKD-IAIVGQLKKLEILSFRDSYIEE--LPHEIGQLTRL 341 (561)
Q Consensus 305 ~l~~-p~~i~~L~~L~~L~l~~~~~~~--lp~~i~~L~~L 341 (561)
.++. |.. .+++|++|++++|.+.. +|..++++++|
T Consensus 80 ~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L 117 (520)
T 2z7x_B 80 KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQL 117 (520)
T ss_dssp CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTC
T ss_pred ceeecCcc--ccCCccEEeccCCccccccchhhhccCCcc
Confidence 6666 433 56666666666666654 35566666655
No 33
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.82 E-value=4.1e-19 Score=191.49 Aligned_cols=182 Identities=16% Similarity=0.224 Sum_probs=138.9
Q ss_pred ceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCC-chhhcCCCCCcEEEeCC
Q 041360 225 PIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSL-PSSLGRLFNLQTLCLGG 303 (561)
Q Consensus 225 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~ 303 (561)
-+.++.+++.+..+|..+. +++++|+++++. +..++...|+++++|++|++++|.+..+ |..++.+++|++|++++
T Consensus 13 ~~~~~c~~~~l~~ip~~~~-~~l~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~ 89 (606)
T 3vq2_A 13 NITYQCMDQKLSKVPDDIP-SSTKNIDLSFNP--LKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG 89 (606)
T ss_dssp TTEEECTTSCCSSCCTTSC-TTCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CCceEccCCCcccCCCCCC-CCcCEEECCCCC--cCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCC
Confidence 3468888888999998664 889999999997 7777776679999999999999999997 66899999999999999
Q ss_pred CCCCC--cccccCCCCCcEEEccCCcCcccC-hhhhcccccc------------ccCchhhcCCCCCcEEEccCCccccc
Q 041360 304 CRLKD--IAIVGQLKKLEILSFRDSYIEELP-HEIGQLTRLV------------VIAPNLISKFSQLEELYMGDSFSQWD 368 (561)
Q Consensus 304 ~~l~~--p~~i~~L~~L~~L~l~~~~~~~lp-~~i~~L~~L~------------~l~~~~i~~l~~L~~L~l~~~~~~~~ 368 (561)
|.+.. |..++++++|++|++++|.+..+| ..++++++|+ .+|. .++++++|++|++++|.....
T Consensus 90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA-YFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG-GGGTCTTCCEEECCSSCCCEE
T ss_pred CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechH-hHhhcCCCCEEEccCCcceec
Confidence 99887 688999999999999999998887 5677777772 2344 488999999999998865433
Q ss_pred ccCCCcccchHhhcCCCC-CcEEEEeeccCcccCccc-ccccccEEEEE
Q 041360 369 KVEGGSNASLAELKGLSK-LTTLEIQVRDAQILPQDL-VLVELQRYKIC 415 (561)
Q Consensus 369 ~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~ 415 (561)
.+ ..+..+.+++. +..|+++.|.+..++... ...+|+.|++.
T Consensus 169 ~~-----~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~ 212 (606)
T 3vq2_A 169 TV-----NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLR 212 (606)
T ss_dssp CT-----TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEE
T ss_pred Ch-----hhhhhhhccccccceeeccCCCcceeCcccccCceeeeeecc
Confidence 22 12333443433 446777766666555432 33356666664
No 34
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.81 E-value=7.3e-20 Score=180.07 Aligned_cols=241 Identities=13% Similarity=0.113 Sum_probs=167.5
Q ss_pred CCceEEEccCCCcc---ccCCcc-CCCCccEEEeec-cCCCCccccHHHHcCCCCccEEEecCCCCC-CCchhhcCCCCC
Q 041360 223 KGPIAISLPHRDIQ---ELPERL-QCPNLELFLLFR-KGYGSMQISDLFFEGTEEVKVLSLTGVRFS-SLPSSLGRLFNL 296 (561)
Q Consensus 223 ~~l~~l~l~~~~~~---~l~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~-~lp~~i~~L~~L 296 (561)
.++++++++++.+. .+|..+ .+++|++|++++ +. ....+|..+ +++++|++|++++|.+. .+|..+..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~-l~~~~p~~l-~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINN-LVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETT-EESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCc-ccccCChhH-hcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 46889999998886 577766 789999999985 55 344677665 88999999999999887 578889999999
Q ss_pred cEEEeCCCCCCC--cccccCCCCCcEEEccCCcCc-ccChhhhccccccccCchhhcCCC-CCcEEEccCCcccccccCC
Q 041360 297 QTLCLGGCRLKD--IAIVGQLKKLEILSFRDSYIE-ELPHEIGQLTRLVVIAPNLISKFS-QLEELYMGDSFSQWDKVEG 372 (561)
Q Consensus 297 ~~L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~~~-~lp~~i~~L~~L~~l~~~~i~~l~-~L~~L~l~~~~~~~~~~~~ 372 (561)
++|++++|.+.. |..++.+++|++|++++|.+. .+|.. +++++ +|++|++++|......+
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~--------------l~~l~~~L~~L~L~~N~l~~~~~-- 191 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS--------------YGSFSKLFTSMTISRNRLTGKIP-- 191 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGG--------------GGCCCTTCCEEECCSSEEEEECC--
T ss_pred CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHH--------------HhhhhhcCcEEECcCCeeeccCC--
Confidence 999999998774 788899999999999998876 45543 55665 78888888887653333
Q ss_pred CcccchHhhcCCCCCcEEEEeeccCcccCcc--cccccccEEEEEeccccccCCCCccccceEEEecCCccchhhhhhhH
Q 041360 373 GSNASLAELKGLSKLTTLEIQVRDAQILPQD--LVLVELQRYKICIGEAWRMWGVTSEISRLVRLHGLENVSTLLENYGM 450 (561)
Q Consensus 373 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ 450 (561)
..+..++ |+.|+++.|.+...+.. ..+++|+.|++..+. +. .....+
T Consensus 192 ------~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~-----------------------~~~~~~ 240 (313)
T 1ogq_A 192 ------PTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS-LA-----------------------FDLGKV 240 (313)
T ss_dssp ------GGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE-EC-----------------------CBGGGC
T ss_pred ------hHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc-ee-----------------------eecCcc
Confidence 4556665 88888888776543322 256667776663221 10 000111
Q ss_pred HHhhccccceeeccccCcccccccccCCCCCCCccEEEEecCCccc-hhhcccCcccCCcCccccccccccccc
Q 041360 451 KMLLKEAEEIHLNELKGVQNAVHELDDGEGFPRLKHLRVESCSEIL-HIVGSVGRVRRKVFPLLESLSLKKASF 523 (561)
Q Consensus 451 ~~ll~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~-~l~~~~~~~~~~~~~~L~~L~l~~c~~ 523 (561)
.. +++|++|+++++.-...++.. ...+++|++|+++++ +++ .+| ....+++|+.|.+.+++.
T Consensus 241 ~~-l~~L~~L~Ls~N~l~~~~p~~---l~~l~~L~~L~Ls~N-~l~~~ip------~~~~l~~L~~l~l~~N~~ 303 (313)
T 1ogq_A 241 GL-SKNLNGLDLRNNRIYGTLPQG---LTQLKFLHSLNVSFN-NLCGEIP------QGGNLQRFDVSAYANNKC 303 (313)
T ss_dssp CC-CTTCCEEECCSSCCEECCCGG---GGGCTTCCEEECCSS-EEEEECC------CSTTGGGSCGGGTCSSSE
T ss_pred cc-cCCCCEEECcCCcccCcCChH---HhcCcCCCEEECcCC-cccccCC------CCccccccChHHhcCCCC
Confidence 12 277788888775544345544 346788888888875 444 444 336677888888877764
No 35
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.81 E-value=2e-19 Score=191.91 Aligned_cols=104 Identities=18% Similarity=0.219 Sum_probs=74.6
Q ss_pred CCceEEEccCCCccccCC-cc-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEE
Q 041360 223 KGPIAISLPHRDIQELPE-RL-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLC 300 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~ 300 (561)
++++++++++|.+..++. .+ .+++|++|+++++. +..++...|+++++|++|++++|.++.+|.. .+.+|++|+
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNR--IRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLD 127 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCC--CCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEE
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCC--CCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEE
Confidence 677777777777777664 33 67777888887776 5566544457777788888877777777766 677777777
Q ss_pred eCCCCCCC---cccccCCCCCcEEEccCCcCcc
Q 041360 301 LGGCRLKD---IAIVGQLKKLEILSFRDSYIEE 330 (561)
Q Consensus 301 l~~~~l~~---p~~i~~L~~L~~L~l~~~~~~~ 330 (561)
+++|.+.. |..++++++|++|++++|.+..
T Consensus 128 Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~ 160 (562)
T 3a79_B 128 LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ 160 (562)
T ss_dssp CCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred CCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence 77777665 3577777777777777776553
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.81 E-value=3.6e-19 Score=186.10 Aligned_cols=284 Identities=17% Similarity=0.112 Sum_probs=210.5
Q ss_pred eEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCC-chhhcCCCCCcEEEeCCC
Q 041360 226 IAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSL-PSSLGRLFNLQTLCLGGC 304 (561)
Q Consensus 226 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~ 304 (561)
+.+..++..+..+|..+ .++++.|+++++. +..++...|.++++|++|++++|.+..+ |..+..+++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~ip~~~-~~~l~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFVAVPEGI-PTETRLLDLGKNR--IKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCSSCCSCC-CTTCSEEECCSSC--CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCcCCCCC-CCCCcEEECCCCc--cceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 46777777888888755 4689999999997 7777666679999999999999999987 788999999999999999
Q ss_pred CCCC-c-ccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhc
Q 041360 305 RLKD-I-AIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELK 382 (561)
Q Consensus 305 ~l~~-p-~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~ 382 (561)
.+.. | ..++++++|++|++++|.+..++. ..+.++++|++|++++|......+ ..+.
T Consensus 91 ~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~-------------~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~ 149 (477)
T 2id5_A 91 RLKLIPLGVFTGLSNLTKLDISENKIVILLD-------------YMFQDLYNLKSLEVGDNDLVYISH--------RAFS 149 (477)
T ss_dssp CCCSCCTTSSTTCTTCCEEECTTSCCCEECT-------------TTTTTCTTCCEEEECCTTCCEECT--------TSST
T ss_pred cCCccCcccccCCCCCCEEECCCCccccCCh-------------hHccccccCCEEECCCCccceeCh--------hhcc
Confidence 9988 5 568999999999999998775532 237889999999999987643222 4678
Q ss_pred CCCCCcEEEEeeccCcccCcc--cccccccEEEEEeccc--cc-cCCCCccccceEEEecCCccchhhhhhhHHHhhccc
Q 041360 383 GLSKLTTLEIQVRDAQILPQD--LVLVELQRYKICIGEA--WR-MWGVTSEISRLVRLHGLENVSTLLENYGMKMLLKEA 457 (561)
Q Consensus 383 ~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~--~~-~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~ll~~L 457 (561)
++++|+.|+++.|.+..++.. ..+++|+.|++..... .+ ....... ++..|++.++......+...... .+|
T Consensus 150 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~--~L~~L~l~~~~~~~~~~~~~~~~-~~L 226 (477)
T 2id5_A 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY--RLKVLEISHWPYLDTMTPNCLYG-LNL 226 (477)
T ss_dssp TCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCT--TCCEEEEECCTTCCEECTTTTTT-CCC
T ss_pred CCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCc--ccceeeCCCCccccccCcccccC-ccc
Confidence 899999999999999887764 3789999999964321 11 1222333 44445444322122223333233 589
Q ss_pred cceeeccccCcccccccccCCCCCCCccEEEEecCCccchhhcccCcccCCcCccccccccccccc-cccCCCCCCCCCC
Q 041360 458 EEIHLNELKGVQNAVHELDDGEGFPRLKHLRVESCSEILHIVGSVGRVRRKVFPLLESLSLKKASF-VILHGQKPTAASK 536 (561)
Q Consensus 458 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~c~~-~~~~~~~~~~~l~ 536 (561)
+.|+++++ .++.++... ...+++|++|+++++ .++.++. .....+++|+.|.+.++.- .+. +..+..++
T Consensus 227 ~~L~l~~n-~l~~~~~~~--~~~l~~L~~L~Ls~n-~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~ 296 (477)
T 2id5_A 227 TSLSITHC-NLTAVPYLA--VRHLVYLRFLNLSYN-PISTIEG----SMLHELLRLQEIQLVGGQLAVVE--PYAFRGLN 296 (477)
T ss_dssp SEEEEESS-CCCSCCHHH--HTTCTTCCEEECCSS-CCCEECT----TSCTTCTTCCEEECCSSCCSEEC--TTTBTTCT
T ss_pred cEEECcCC-cccccCHHH--hcCccccCeeECCCC-cCCccCh----hhccccccCCEEECCCCccceEC--HHHhcCcc
Confidence 99999986 455555322 357899999999995 5666552 1236788999999998875 442 33477889
Q ss_pred CCcccCCCcc
Q 041360 537 GPEREKPTTS 546 (561)
Q Consensus 537 ~L~~L~i~~c 546 (561)
+|+.|++.++
T Consensus 297 ~L~~L~L~~N 306 (477)
T 2id5_A 297 YLRVLNVSGN 306 (477)
T ss_dssp TCCEEECCSS
T ss_pred cCCEEECCCC
Confidence 9999999877
No 37
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.81 E-value=2.9e-19 Score=185.71 Aligned_cols=299 Identities=12% Similarity=0.053 Sum_probs=198.0
Q ss_pred eEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCC-C-chhhcCCCCCcEEEeCC
Q 041360 226 IAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSS-L-PSSLGRLFNLQTLCLGG 303 (561)
Q Consensus 226 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~-l-p~~i~~L~~L~~L~l~~ 303 (561)
+.+..+++.+..+|. -.++|++|+++++. +..++...|+++++|++|++++|.+.. + |..+..+++|++|++++
T Consensus 13 ~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLHQVPE--LPAHVNYVDLSLNS--IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCSSCCC--CCTTCCEEECCSSC--CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcccCCC--CCCccCEEEecCCc--cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 356667777888887 34899999999997 666655556999999999999999864 4 56799999999999999
Q ss_pred CCCCC--cccccCCCCCcEEEccCCcCcc-cChh--hhccccc----------ccc-CchhhcCCCCCcEEEccCCcccc
Q 041360 304 CRLKD--IAIVGQLKKLEILSFRDSYIEE-LPHE--IGQLTRL----------VVI-APNLISKFSQLEELYMGDSFSQW 367 (561)
Q Consensus 304 ~~l~~--p~~i~~L~~L~~L~l~~~~~~~-lp~~--i~~L~~L----------~~l-~~~~i~~l~~L~~L~l~~~~~~~ 367 (561)
|.+.. |..++++++|++|++++|.+.. +|.. ++++++| ..+ |...++++++|++|++++|....
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 99887 6889999999999999998875 3433 5555555 222 33235677777777777776533
Q ss_pred cccCCCcccchHhhcCC--CCCcEEEEeeccCcccCccc----------ccccccEEEEEeccc---cccC---------
Q 041360 368 DKVEGGSNASLAELKGL--SKLTTLEIQVRDAQILPQDL----------VLVELQRYKICIGEA---WRMW--------- 423 (561)
Q Consensus 368 ~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~----------~~~~L~~L~l~~~~~---~~~~--------- 423 (561)
..+ ..+..+ .+|+.|+++.+.+..++... .+++|+.|++..+.. .+.+
T Consensus 169 ~~~--------~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~ 240 (455)
T 3v47_A 169 ICE--------EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTK 240 (455)
T ss_dssp CCT--------TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCC
T ss_pred cCh--------hhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccc
Confidence 222 122222 46677777766665544321 335677777743311 0000
Q ss_pred ----------------------------CCCccccceEEEecCCccchhhhhhhHHHhhccccceeeccccCcccccccc
Q 041360 424 ----------------------------GVTSEISRLVRLHGLENVSTLLENYGMKMLLKEAEEIHLNELKGVQNAVHEL 475 (561)
Q Consensus 424 ----------------------------~~~~~~~~l~~L~~~~~~~~~~~~~~~~~ll~~L~~L~l~~~~~~~~~~~~~ 475 (561)
.......++..|++.++......+..+..+ ++|+.|+++++.-....+..
T Consensus 241 L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~- 318 (455)
T 3v47_A 241 IQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF-TDLEQLTLAQNEINKIDDNA- 318 (455)
T ss_dssp EEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTC-TTCCEEECTTSCCCEECTTT-
T ss_pred eeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccC-CCCCEEECCCCcccccChhH-
Confidence 000111345555555544233334455555 88888888875433222323
Q ss_pred cCCCCCCCccEEEEecCCccchhhcccCcccCCcCccccccccccccc-cccCCCCCCCCCCCCcccCCCccc
Q 041360 476 DDGEGFPRLKHLRVESCSEILHIVGSVGRVRRKVFPLLESLSLKKASF-VILHGQKPTAASKGPEREKPTTSL 547 (561)
Q Consensus 476 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~c~~-~~~~~~~~~~~l~~L~~L~i~~c~ 547 (561)
...+++|++|+++++ .++.++. .....+++|+.|++.+|.- .+. +..+..+++|+.|++.++.
T Consensus 319 --~~~l~~L~~L~Ls~N-~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~--~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 319 --FWGLTHLLKLNLSQN-FLGSIDS----RMFENLDKLEVLDLSYNHIRALG--DQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp --TTTCTTCCEEECCSS-CCCEECG----GGGTTCTTCCEEECCSSCCCEEC--TTTTTTCTTCCEEECCSSC
T ss_pred --hcCcccCCEEECCCC-ccCCcCh----hHhcCcccCCEEECCCCcccccC--hhhccccccccEEECCCCc
Confidence 457889999999985 5555531 1336789999999999875 432 2336778999999998863
No 38
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.81 E-value=6.7e-20 Score=195.24 Aligned_cols=179 Identities=17% Similarity=0.191 Sum_probs=144.8
Q ss_pred EEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCc-hhhcCCCCCcEEEeCCCCC
Q 041360 228 ISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLP-SSLGRLFNLQTLCLGGCRL 306 (561)
Q Consensus 228 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~l 306 (561)
.+.+++.+..+|..+. ++|++|+++++. +..++...|+++++|++|++++|.+..++ ..++.+++|++|++++|.+
T Consensus 10 c~~~~~~l~~ip~~~~-~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 10 CDGRSRSFTSIPSGLT-AAMKSLDLSFNK--ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp EECTTSCCSSCCSCCC-TTCCEEECCSSC--CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EECCCCccccccccCC-CCccEEECcCCc--cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence 5666778888888653 899999999998 66665545699999999999999999975 6899999999999999999
Q ss_pred CC-c-ccccCCCCCcEEEccCCcCccc--Chhhhccccc-----------cccCchhhcCCCCCcEEEccCCcccccccC
Q 041360 307 KD-I-AIVGQLKKLEILSFRDSYIEEL--PHEIGQLTRL-----------VVIAPNLISKFSQLEELYMGDSFSQWDKVE 371 (561)
Q Consensus 307 ~~-p-~~i~~L~~L~~L~l~~~~~~~l--p~~i~~L~~L-----------~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~ 371 (561)
.. + ..++++++|++|++++|.+..+ |..++++++| ..+|...++++++|++|++++|......+
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~- 165 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQS- 165 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECT-
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccCh-
Confidence 88 5 5599999999999999998854 6677777766 33444457889999999998887643333
Q ss_pred CCcccchHhhcCCCCCcEEEEeeccCcccCccc--ccccccEEEEEec
Q 041360 372 GGSNASLAELKGLSKLTTLEIQVRDAQILPQDL--VLVELQRYKICIG 417 (561)
Q Consensus 372 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~ 417 (561)
..++++++|+.|+++.+....++... .+++|+.|++..+
T Consensus 166 -------~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n 206 (549)
T 2z81_A 166 -------QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT 206 (549)
T ss_dssp -------TTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESC
T ss_pred -------hhhhccccCceEecccCcccccchhhHhhcccccEEEccCC
Confidence 56788889999999988877666553 5789999999643
No 39
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.81 E-value=1e-18 Score=186.46 Aligned_cols=137 Identities=19% Similarity=0.210 Sum_probs=114.3
Q ss_pred CceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCC-chhhcCCCCCcEEEeC
Q 041360 224 GPIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSL-PSSLGRLFNLQTLCLG 302 (561)
Q Consensus 224 ~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l-p~~i~~L~~L~~L~l~ 302 (561)
..++++++++.+..+|..+. ++|++|+++++. +..++...|+++++|++|++++|.++.+ |..++.+++|++|+++
T Consensus 32 ~~~~l~ls~~~L~~ip~~~~-~~L~~L~Ls~N~--i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 108 (562)
T 3a79_B 32 LESMVDYSNRNLTHVPKDLP-PRTKALSLSQNS--ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS 108 (562)
T ss_dssp -CCEEECTTSCCCSCCTTSC-TTCCEEECCSSC--CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCcEEEcCCCCCccCCCCCC-CCcCEEECCCCC--ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence 34899999999999998664 899999999998 7778766679999999999999999997 6789999999999999
Q ss_pred CCCCCC-cccccCCCCCcEEEccCCcCcccC--hhhhcccccccc-------CchhhcCCCCC--cEEEccCCcc
Q 041360 303 GCRLKD-IAIVGQLKKLEILSFRDSYIEELP--HEIGQLTRLVVI-------APNLISKFSQL--EELYMGDSFS 365 (561)
Q Consensus 303 ~~~l~~-p~~i~~L~~L~~L~l~~~~~~~lp--~~i~~L~~L~~l-------~~~~i~~l~~L--~~L~l~~~~~ 365 (561)
+|.++. |.. .+++|++|++++|.+..+| ..++++++|+.+ ....+..+++| ++|++++|..
T Consensus 109 ~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 109 HNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp TSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSC
T ss_pred CCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccc
Confidence 999988 655 8999999999999998865 788888888332 22235556666 8888887755
No 40
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.80 E-value=1e-18 Score=191.05 Aligned_cols=141 Identities=17% Similarity=0.156 Sum_probs=111.4
Q ss_pred CCceEEEccCCCccccCCc-c-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCch-hhcCCCCCcEE
Q 041360 223 KGPIAISLPHRDIQELPER-L-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPS-SLGRLFNLQTL 299 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~-~i~~L~~L~~L 299 (561)
.+++++++++|.+..++.. + .+++|++|+++++. +..+++..|+++++|++|++++|.+..+|. .++.+.+|++|
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 102 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT--ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL 102 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC--CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc--cCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEE
Confidence 7899999999999888764 3 78999999999987 666666667999999999999999999986 69999999999
Q ss_pred EeCCCCCCC-c-ccccCCCCCcEEEccCCcCcccC-hhhhccccccc----------cCchhh--cCCCCCcEEEccCCc
Q 041360 300 CLGGCRLKD-I-AIVGQLKKLEILSFRDSYIEELP-HEIGQLTRLVV----------IAPNLI--SKFSQLEELYMGDSF 364 (561)
Q Consensus 300 ~l~~~~l~~-p-~~i~~L~~L~~L~l~~~~~~~lp-~~i~~L~~L~~----------l~~~~i--~~l~~L~~L~l~~~~ 364 (561)
++++|.+.. + ..++++++|++|++++|.+...+ ..++++++|+. ++...+ ..+++|++|++++|.
T Consensus 103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 999999888 4 78999999999999999877654 44555555522 222222 245677777777765
Q ss_pred c
Q 041360 365 S 365 (561)
Q Consensus 365 ~ 365 (561)
.
T Consensus 183 l 183 (680)
T 1ziw_A 183 I 183 (680)
T ss_dssp C
T ss_pred c
Confidence 4
No 41
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.80 E-value=5.7e-19 Score=197.23 Aligned_cols=144 Identities=21% Similarity=0.257 Sum_probs=111.3
Q ss_pred ccCCCceEEEccCCCccccCC-cc-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCC-chhhcCCCCC
Q 041360 220 TKQKGPIAISLPHRDIQELPE-RL-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSL-PSSLGRLFNL 296 (561)
Q Consensus 220 ~~~~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l-p~~i~~L~~L 296 (561)
.+ .++++|++++|.+..++. .+ .+++|++|+++++. ....+++..|+++++|++|+|++|.+..+ |..++.+.+|
T Consensus 22 lp-~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~-~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L 99 (844)
T 3j0a_A 22 VL-NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQY-TPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHL 99 (844)
T ss_dssp SC-TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTC-CCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSC
T ss_pred CC-CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCC-CccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCccc
Confidence 44 789999999999987744 44 89999999999996 46677555569999999999999999986 8899999999
Q ss_pred cEEEeCCCCCCC--ccc--ccCCCCCcEEEccCCcCcccC--hhhhcccccccc----------CchhhcCC--CCCcEE
Q 041360 297 QTLCLGGCRLKD--IAI--VGQLKKLEILSFRDSYIEELP--HEIGQLTRLVVI----------APNLISKF--SQLEEL 358 (561)
Q Consensus 297 ~~L~l~~~~l~~--p~~--i~~L~~L~~L~l~~~~~~~lp--~~i~~L~~L~~l----------~~~~i~~l--~~L~~L 358 (561)
++|+|++|.+.. |.. ++++++|++|++++|.+..++ ..++++++|+.+ ....++.+ ++|+.|
T Consensus 100 ~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L 179 (844)
T 3j0a_A 100 FELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFF 179 (844)
T ss_dssp CCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCC
T ss_pred CEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceE
Confidence 999999999876 544 999999999999999887663 455666655222 11223333 566666
Q ss_pred EccCCcc
Q 041360 359 YMGDSFS 365 (561)
Q Consensus 359 ~l~~~~~ 365 (561)
++++|..
T Consensus 180 ~L~~n~l 186 (844)
T 3j0a_A 180 SLAANSL 186 (844)
T ss_dssp EECCSBS
T ss_pred ECCCCcc
Confidence 6666544
No 42
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.79 E-value=3.6e-18 Score=186.64 Aligned_cols=109 Identities=21% Similarity=0.222 Sum_probs=66.4
Q ss_pred CCceEEEccCCCccccCCc-c-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCc-hhhcCCCCCcEE
Q 041360 223 KGPIAISLPHRDIQELPER-L-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLP-SSLGRLFNLQTL 299 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~L~~L~~L 299 (561)
.+++++++++|.+..+++. + .+++|++|+++++. +..+|...|+++++|++|++++|.+..+| ..++.+++|++|
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 126 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE--LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL 126 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEE
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc--cCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEE
Confidence 4566666666666555333 2 56666666666665 55566544566666666666666666654 456666666666
Q ss_pred EeCCCCCCC--cccccCCCCCcEEEccCCcCcccCh
Q 041360 300 CLGGCRLKD--IAIVGQLKKLEILSFRDSYIEELPH 333 (561)
Q Consensus 300 ~l~~~~l~~--p~~i~~L~~L~~L~l~~~~~~~lp~ 333 (561)
++++|.+.. |..++++++|++|++++|.+..++.
T Consensus 127 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 127 DLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp ECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred ECCCCcccccCchhhcccccCCEEEccCCcccccCH
Confidence 666666555 3556666666666666665555543
No 43
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=2.7e-18 Score=186.04 Aligned_cols=117 Identities=26% Similarity=0.320 Sum_probs=81.5
Q ss_pred CCceEEEccCCCccccCCc-c-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCch-hhcCCCCCcEE
Q 041360 223 KGPIAISLPHRDIQELPER-L-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPS-SLGRLFNLQTL 299 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~-~i~~L~~L~~L 299 (561)
..+++|++++|.+..+++. + .+++|++|++++|. +..+++..|+++++|++|+|++|.++.+|. .+..+.+|++|
T Consensus 52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~--i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L 129 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE--IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 129 (635)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC--CCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE
T ss_pred cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCc--CCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE
Confidence 5677888888777777653 3 67777888887776 666766666777777777777777777764 46777777777
Q ss_pred EeCCCCCCC-c-ccccCCCCCcEEEccCCcCcc--cChhhhccccc
Q 041360 300 CLGGCRLKD-I-AIVGQLKKLEILSFRDSYIEE--LPHEIGQLTRL 341 (561)
Q Consensus 300 ~l~~~~l~~-p-~~i~~L~~L~~L~l~~~~~~~--lp~~i~~L~~L 341 (561)
++++|.++. + ..++++++|++|++++|.+.. +|..++++++|
T Consensus 130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L 175 (635)
T 4g8a_A 130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 175 (635)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTC
T ss_pred ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhh
Confidence 777777766 3 457777777777777776553 35555554444
No 44
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.78 E-value=1.7e-18 Score=185.81 Aligned_cols=182 Identities=16% Similarity=0.274 Sum_probs=144.3
Q ss_pred CEEeeccchhhhcccCCcceEec---CCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHcCCChHHHHHHHHHHcCCC
Q 041360 1 MILTSRNRDLLERDMNSQKNFLI---EVLSKEEALQLFENILGDSTKTSTIQPIADEIVKRCGGLPVAVTTVANALKSKS 77 (561)
Q Consensus 1 IlvTTR~~~va~~~~~~~~~~~l---~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~~~ 77 (561)
||||||++.++.. .. ...+++ ++|+.+||++||.+.++.. .....+.+.+|+++|+|+||||..+|+.|+...
T Consensus 260 ilvTsR~~~~~~~-~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~--~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~ 335 (591)
T 1z6t_A 260 ILLTTRDKSVTDS-VM-GPKYVVPVESSLGKEKGLEILSLFVNMK--KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP 335 (591)
T ss_dssp EEEEESCGGGGTT-CC-SCEEEEECCSSCCHHHHHHHHHHHHTSC--GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST
T ss_pred EEEECCCcHHHHh-cC-CCceEeecCCCCCHHHHHHHHHHHhCCC--cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc
Confidence 6999999998642 22 344555 5899999999999999742 223357899999999999999999999998663
Q ss_pred HHHHHHHHHHHhhCCCCCC----CCchhhHHHHHHHHHHhcCChHHHHHHHhhcccCCCcccCHHHHHHHHhhcCccccc
Q 041360 78 LDIWKDALSQLRSSNPREI----DGMDKNVYTSIELSYNLLASKEAKSLFRLCGLYNEGHAIQVASLLRYGMGWGLFKNV 153 (561)
Q Consensus 78 ~~~w~~~~~~l~~~~~~~~----~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~~~~~~l~~~w~a~g~~~~~ 153 (561)
..|+.+++.+.......+ .....++..++..||+.||++ .|.||+++|+||+++.|+...+..+|.+++
T Consensus 336 -~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~~~~i~~~~l~~l~~~~~----- 408 (591)
T 1z6t_A 336 -NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQKDVKVPTKVLCILWDMET----- 408 (591)
T ss_dssp -TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCTTCCEEHHHHHHHHTCCH-----
T ss_pred -hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCCCCccCHHHHHHHhccCH-----
Confidence 379999998876532221 123468999999999999997 999999999999999999999999997541
Q ss_pred ccHHHHHHHHHHHHHHHHHcCccccc--CCCCceehhHHHHHHHHHHhh
Q 041360 154 YTLEEARSRVHRLIDNLKSSCLLLDG--DGKDEVKMHDVIHVVAVSIAT 200 (561)
Q Consensus 154 ~~~~~~~~~~~~~i~~L~~~sll~~~--~~~~~~~mh~lv~~~~~~~~~ 200 (561)
+ .+.+.++.|+++|+++.. +....|.||+++|++++....
T Consensus 409 ---~----~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 409 ---E----EVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp ---H----HHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred ---H----HHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhhhh
Confidence 2 234578899999999743 233479999999999998843
No 45
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.78 E-value=3.9e-19 Score=174.83 Aligned_cols=245 Identities=14% Similarity=0.107 Sum_probs=183.4
Q ss_pred CCccEEEeeccCCCCc--cccHHHHcCCCCccEEEecC-CCCC-CCchhhcCCCCCcEEEeCCCCCCC--cccccCCCCC
Q 041360 245 PNLELFLLFRKGYGSM--QISDLFFEGTEEVKVLSLTG-VRFS-SLPSSLGRLFNLQTLCLGGCRLKD--IAIVGQLKKL 318 (561)
Q Consensus 245 ~~L~~L~l~~~~~~~~--~~~~~~~~~l~~Lr~L~l~~-~~i~-~lp~~i~~L~~L~~L~l~~~~l~~--p~~i~~L~~L 318 (561)
.+++.|+++++. ... .+|..+ +++++|++|++++ |.+. .+|..++.+++|++|++++|.+.. |..++++++|
T Consensus 50 ~~l~~L~L~~~~-l~~~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLN-LPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCC-CSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred ceEEEEECCCCC-ccCCcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence 689999999998 333 677765 8999999999995 7776 479999999999999999999884 7889999999
Q ss_pred cEEEccCCcCc-ccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhcCCC-CCcEEEEeecc
Q 041360 319 EILSFRDSYIE-ELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLS-KLTTLEIQVRD 396 (561)
Q Consensus 319 ~~L~l~~~~~~-~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~-~L~~L~l~~~~ 396 (561)
++|++++|.+. .+|.. ++++++|++|++++|......+ ..+..++ +|+.|+++.|.
T Consensus 128 ~~L~Ls~N~l~~~~p~~--------------~~~l~~L~~L~L~~N~l~~~~p--------~~l~~l~~~L~~L~L~~N~ 185 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPS--------------ISSLPNLVGITFDGNRISGAIP--------DSYGSFSKLFTSMTISRNR 185 (313)
T ss_dssp CEEECCSSEEESCCCGG--------------GGGCTTCCEEECCSSCCEEECC--------GGGGCCCTTCCEEECCSSE
T ss_pred CEEeCCCCccCCcCChH--------------HhcCCCCCeEECcCCcccCcCC--------HHHhhhhhcCcEEECcCCe
Confidence 99999999876 34432 6788899999999997653333 5677887 99999999988
Q ss_pred Cc-ccCcccccccccEEEEEeccccccCCCCccccceEEEecCCccchhhhhhhHHHhhccccceeeccccCcccccccc
Q 041360 397 AQ-ILPQDLVLVELQRYKICIGEAWRMWGVTSEISRLVRLHGLENVSTLLENYGMKMLLKEAEEIHLNELKGVQNAVHEL 475 (561)
Q Consensus 397 ~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~ll~~L~~L~l~~~~~~~~~~~~~ 475 (561)
+. .+|..+..-+|+.|++..+. + ....+..+..+ ++|+.|++.++.-....+.
T Consensus 186 l~~~~~~~~~~l~L~~L~Ls~N~-l----------------------~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~-- 239 (313)
T 1ogq_A 186 LTGKIPPTFANLNLAFVDLSRNM-L----------------------EGDASVLFGSD-KNTQKIHLAKNSLAFDLGK-- 239 (313)
T ss_dssp EEEECCGGGGGCCCSEEECCSSE-E----------------------EECCGGGCCTT-SCCSEEECCSSEECCBGGG--
T ss_pred eeccCChHHhCCcccEEECcCCc-c----------------------cCcCCHHHhcC-CCCCEEECCCCceeeecCc--
Confidence 76 44444322237776663221 1 11123333344 8999999998654333333
Q ss_pred cCCCCCCCccEEEEecCCccc-hhhcccCcccCCcCccccccccccccc--cccCCCCCCCCCCCCcccCCCccccccc
Q 041360 476 DDGEGFPRLKHLRVESCSEIL-HIVGSVGRVRRKVFPLLESLSLKKASF--VILHGQKPTAASKGPEREKPTTSLGFNE 551 (561)
Q Consensus 476 ~~~~~~~~L~~L~l~~c~~l~-~l~~~~~~~~~~~~~~L~~L~l~~c~~--~~~~~~~~~~~l~~L~~L~i~~c~~l~~ 551 (561)
...+++|++|+++++ +++ .+|. ....+++|+.|++.+++- .++. ...+++|+.+++.+++.+-.
T Consensus 240 --~~~l~~L~~L~Ls~N-~l~~~~p~-----~l~~l~~L~~L~Ls~N~l~~~ip~----~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 240 --VGLSKNLNGLDLRNN-RIYGTLPQ-----GLTQLKFLHSLNVSFNNLCGEIPQ----GGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp --CCCCTTCCEEECCSS-CCEECCCG-----GGGGCTTCCEEECCSSEEEEECCC----STTGGGSCGGGTCSSSEEES
T ss_pred --ccccCCCCEEECcCC-cccCcCCh-----HHhcCcCCCEEECcCCcccccCCC----CccccccChHHhcCCCCccC
Confidence 356899999999996 454 5552 346789999999999985 3322 36789999999999987764
No 46
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.78 E-value=1.5e-18 Score=179.90 Aligned_cols=168 Identities=21% Similarity=0.246 Sum_probs=123.6
Q ss_pred ceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCc-hhhcCCCCCcEEEeCC
Q 041360 225 PIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLP-SSLGRLFNLQTLCLGG 303 (561)
Q Consensus 225 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~ 303 (561)
.+.++..+..+..+|..+ .++++.|+++++. +..++...|+++++|++|++++|.+..++ ..+..+.+|++|+|++
T Consensus 56 ~~~v~c~~~~l~~iP~~~-~~~l~~L~L~~n~--i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGI-PSNTRYLNLMENN--IQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCSSCCSCC-CTTCSEEECCSSC--CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcCccCCCC-CCCccEEECcCCc--CceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 456677777777777654 3678888888887 66665555688888888888888888864 6788888888888888
Q ss_pred CCCCC-c-ccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhh
Q 041360 304 CRLKD-I-AIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAEL 381 (561)
Q Consensus 304 ~~l~~-p-~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 381 (561)
|.++. + ..++.+++|++|++++|.+..+|. ..+.++++|++|++++|......+. ..+
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------------~~~~~l~~L~~L~l~~~~~l~~i~~-------~~~ 192 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPS-------------YAFNRVPSLMRLDLGELKKLEYISE-------GAF 192 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECT-------------TTTTTCTTCCEEECCCCTTCCEECT-------TTT
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCH-------------hHHhcCCcccEEeCCCCCCccccCh-------hhc
Confidence 88877 4 558888888888888887766553 2367778888888877544333321 346
Q ss_pred cCCCCCcEEEEeeccCcccCcccccccccEEEEE
Q 041360 382 KGLSKLTTLEIQVRDAQILPQDLVLVELQRYKIC 415 (561)
Q Consensus 382 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 415 (561)
.++++|+.|+++.|.+..+|....+++|+.|++.
T Consensus 193 ~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls 226 (452)
T 3zyi_A 193 EGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMS 226 (452)
T ss_dssp TTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECT
T ss_pred cCCCCCCEEECCCCcccccccccccccccEEECc
Confidence 6778888888888888777766677777777763
No 47
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.78 E-value=1.8e-18 Score=178.78 Aligned_cols=168 Identities=22% Similarity=0.299 Sum_probs=119.8
Q ss_pred ceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCc-hhhcCCCCCcEEEeCC
Q 041360 225 PIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLP-SSLGRLFNLQTLCLGG 303 (561)
Q Consensus 225 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~ 303 (561)
.+.++..+..+..+|..+. ++++.|+++++. +..++...|+++++|++|++++|.+..++ ..+..+.+|++|+|++
T Consensus 45 ~~~v~c~~~~l~~iP~~~~-~~l~~L~L~~n~--i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~ 121 (440)
T 3zyj_A 45 FSKVICVRKNLREVPDGIS-TNTRLLNLHENQ--IQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121 (440)
T ss_dssp SCEEECCSCCCSSCCSCCC-TTCSEEECCSCC--CCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred CCEEEeCCCCcCcCCCCCC-CCCcEEEccCCc--CCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence 4566667777777776553 678888888886 66666555688888888888888887764 5678888888888888
Q ss_pred CCCCC-c-ccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhh
Q 041360 304 CRLKD-I-AIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAEL 381 (561)
Q Consensus 304 ~~l~~-p-~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 381 (561)
|.++. + ..+..+++|++|++++|.+..+|. ..+.++++|++|++++|......+. ..+
T Consensus 122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-------------~~~~~l~~L~~L~l~~~~~l~~i~~-------~~~ 181 (440)
T 3zyj_A 122 NRLTTIPNGAFVYLSKLKELWLRNNPIESIPS-------------YAFNRIPSLRRLDLGELKRLSYISE-------GAF 181 (440)
T ss_dssp SCCSSCCTTTSCSCSSCCEEECCSCCCCEECT-------------TTTTTCTTCCEEECCCCTTCCEECT-------TTT
T ss_pred CcCCeeCHhHhhccccCceeeCCCCcccccCH-------------HHhhhCcccCEeCCCCCCCcceeCc-------chh
Confidence 88777 4 468888888888888887765543 2366777777788777544332221 346
Q ss_pred cCCCCCcEEEEeeccCcccCcccccccccEEEEE
Q 041360 382 KGLSKLTTLEIQVRDAQILPQDLVLVELQRYKIC 415 (561)
Q Consensus 382 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 415 (561)
.++++|+.|+++.|.++.+|....+++|+.|++.
T Consensus 182 ~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls 215 (440)
T 3zyj_A 182 EGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLS 215 (440)
T ss_dssp TTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECT
T ss_pred hcccccCeecCCCCcCccccccCCCcccCEEECC
Confidence 6777788888887777777766667777777763
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=174.42 Aligned_cols=241 Identities=17% Similarity=0.207 Sum_probs=153.7
Q ss_pred CCceEEEccCCCccccCCc-c-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchh-hcCCCCCcEE
Q 041360 223 KGPIAISLPHRDIQELPER-L-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSS-LGRLFNLQTL 299 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~-i~~L~~L~~L 299 (561)
++++++++++|.+..++.. + .+++|++|+++++. +..++...|+++++|++|++++|.++.+|.. ++.+++|++|
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 129 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG--INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFL 129 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEE
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc--cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEE
Confidence 5778888888888777662 3 67888888888776 5566555457788888888888888877765 7778888888
Q ss_pred EeCCCCCCC-cc--cccCCCCCcEEEccCC-cCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcc
Q 041360 300 CLGGCRLKD-IA--IVGQLKKLEILSFRDS-YIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSN 375 (561)
Q Consensus 300 ~l~~~~l~~-p~--~i~~L~~L~~L~l~~~-~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 375 (561)
++++|.+.. |. .++.+++|++|++++| .+..++ ...++++++|++|++++|......+
T Consensus 130 ~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~-------------~~~~~~l~~L~~L~l~~n~l~~~~~----- 191 (353)
T 2z80_A 130 NLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ-------------RKDFAGLTFLEELEIDASDLQSYEP----- 191 (353)
T ss_dssp ECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC-------------TTTTTTCCEEEEEEEEETTCCEECT-----
T ss_pred ECCCCCCcccCchhhhccCCCCcEEECCCCccccccC-------------HHHccCCCCCCEEECCCCCcCccCH-----
Confidence 888888777 43 6777888888888777 344433 2336777888888888776543222
Q ss_pred cchHhhcCCCCCcEEEEeeccCcccCccc--ccccccEEEEEeccccccCC-------CCccccceEEEe---cCCccch
Q 041360 376 ASLAELKGLSKLTTLEIQVRDAQILPQDL--VLVELQRYKICIGEAWRMWG-------VTSEISRLVRLH---GLENVST 443 (561)
Q Consensus 376 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~-------~~~~~~~l~~L~---~~~~~~~ 443 (561)
..+.++++|+.|+++.|.+..++... .+++|+.|++..+. +.... ..........|. +.++. .
T Consensus 192 ---~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~-l 266 (353)
T 2z80_A 192 ---KSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDES-L 266 (353)
T ss_dssp ---TTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHH-H
T ss_pred ---HHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCc-cccccccccccccccchhhccccccccccCcc-h
Confidence 45677788888888888776666543 46788888875432 11110 001111222222 21111 1
Q ss_pred hhhhhhHHHhhccccceeeccccCcccccccccCCCCCCCccEEEEecC
Q 041360 444 LLENYGMKMLLKEAEEIHLNELKGVQNAVHELDDGEGFPRLKHLRVESC 492 (561)
Q Consensus 444 ~~~~~~~~~ll~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 492 (561)
...+.++..+ ++|+.|+++++ .++.++..+ .+.+++|++|++.++
T Consensus 267 ~~l~~~l~~l-~~L~~L~Ls~N-~l~~i~~~~--~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 267 FQVMKLLNQI-SGLLELEFSRN-QLKSVPDGI--FDRLTSLQKIWLHTN 311 (353)
T ss_dssp HHHHHHHHTC-TTCCEEECCSS-CCCCCCTTT--TTTCTTCCEEECCSS
T ss_pred hhhHHHHhcc-cCCCEEECCCC-CCCccCHHH--HhcCCCCCEEEeeCC
Confidence 2234445554 77777777764 445555442 246777777777775
No 49
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.77 E-value=4e-18 Score=176.38 Aligned_cols=248 Identities=16% Similarity=0.095 Sum_probs=177.9
Q ss_pred CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeCCCCCCCcccccCCCCCcEEE
Q 041360 243 QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLGGCRLKDIAIVGQLKKLEILS 322 (561)
Q Consensus 243 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~p~~i~~L~~L~~L~ 322 (561)
.+++|++|+++++. +..+|. ++.+++|++|++++|.++.+| ++.+++|++|++++|.++..+ ++.+++|++|+
T Consensus 40 ~l~~L~~L~Ls~n~--l~~~~~--l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~l~~L~~L~ 112 (457)
T 3bz5_A 40 QLATLTSLDCHNSS--ITDMTG--IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD-VTPLTKLTYLN 112 (457)
T ss_dssp HHTTCCEEECCSSC--CCCCTT--GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC-CTTCTTCCEEE
T ss_pred HcCCCCEEEccCCC--cccChh--hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee-cCCCCcCCEEE
Confidence 57899999999997 667773 589999999999999999986 899999999999999998842 89999999999
Q ss_pred ccCCcCcccChhhhccccccccC-------chhhcCCCCCcEEEccCCcccccccCCCcccchHhhcCCCCCcEEEEeec
Q 041360 323 FRDSYIEELPHEIGQLTRLVVIA-------PNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIQVR 395 (561)
Q Consensus 323 l~~~~~~~lp~~i~~L~~L~~l~-------~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 395 (561)
+++|.+..+| ++++++|+.+. .-.++++++|++|++++|...... .+..+++|+.|+++.|
T Consensus 113 L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~----------~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 113 CDTNKLTKLD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL----------DVTPQTQLTTLDCSFN 180 (457)
T ss_dssp CCSSCCSCCC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC----------CCTTCTTCCEEECCSS
T ss_pred CCCCcCCeec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc----------ccccCCcCCEEECCCC
Confidence 9999999887 67777663221 112678999999999988543222 3678899999999999
Q ss_pred cCcccCcccccccccEEEEEeccccccCCCCccccceEEEecCCccchhhhhhhHHHhhccccceeeccccCcccccccc
Q 041360 396 DAQILPQDLVLVELQRYKICIGEAWRMWGVTSEISRLVRLHGLENVSTLLENYGMKMLLKEAEEIHLNELKGVQNAVHEL 475 (561)
Q Consensus 396 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~ll~~L~~L~l~~~~~~~~~~~~~ 475 (561)
.++.+| ...+++|+.|++..+. +... ......++..|++.++. ....+ +..+ ++|+.|+++++ .+..++
T Consensus 181 ~l~~l~-l~~l~~L~~L~l~~N~-l~~~-~l~~l~~L~~L~Ls~N~-l~~ip--~~~l-~~L~~L~l~~N-~l~~~~--- 249 (457)
T 3bz5_A 181 KITELD-VSQNKLLNRLNCDTNN-ITKL-DLNQNIQLTFLDCSSNK-LTEID--VTPL-TQLTYFDCSVN-PLTELD--- 249 (457)
T ss_dssp CCCCCC-CTTCTTCCEEECCSSC-CSCC-CCTTCTTCSEEECCSSC-CSCCC--CTTC-TTCSEEECCSS-CCSCCC---
T ss_pred ccceec-cccCCCCCEEECcCCc-CCee-ccccCCCCCEEECcCCc-ccccC--cccc-CCCCEEEeeCC-cCCCcC---
Confidence 998877 5578899999885432 2211 23334556666666644 22222 4444 88999999875 344433
Q ss_pred cCCCCCCCccEEEEecCCccchhhcccC----cccCCcCccccccccccccc
Q 041360 476 DDGEGFPRLKHLRVESCSEILHIVGSVG----RVRRKVFPLLESLSLKKASF 523 (561)
Q Consensus 476 ~~~~~~~~L~~L~l~~c~~l~~l~~~~~----~~~~~~~~~L~~L~l~~c~~ 523 (561)
.+.+++|+.|.+.+ ++++.+.-... .+..+.+++|+.|++.+|+.
T Consensus 250 --~~~l~~L~~L~l~~-n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~ 298 (457)
T 3bz5_A 250 --VSTLSKLTTLHCIQ-TDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQ 298 (457)
T ss_dssp --CTTCTTCCEEECTT-CCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTT
T ss_pred --HHHCCCCCEEeccC-CCCCEEECCCCccCCcccccccccCCEEECCCCcc
Confidence 34566666555544 33433321110 01235679999999999986
No 50
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.77 E-value=1.1e-17 Score=172.97 Aligned_cols=276 Identities=13% Similarity=0.126 Sum_probs=165.1
Q ss_pred CCceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeC
Q 041360 223 KGPIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLG 302 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~ 302 (561)
.+++++++++|.+..++.. .++|++|+++++. +..+|. |+++++|++|++++|.++.+|..+ .+|++|+++
T Consensus 111 ~~L~~L~l~~n~l~~l~~~--~~~L~~L~L~~n~--l~~lp~--~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~ 181 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKALSDL--PPLLEYLGVSNNQ--LEKLPE--LQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAG 181 (454)
T ss_dssp TTCCEEECCSSCCSCCCSC--CTTCCEEECCSSC--CSSCCC--CTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECC
T ss_pred CCCcEEECCCCccCcccCC--CCCCCEEECcCCC--CCCCcc--cCCCCCCCEEECCCCcCcccCCCc---ccccEEECc
Confidence 5677777777766665542 2678888888876 556773 578888888888888887777543 478888888
Q ss_pred CCCCCCcccccCCCCCcEEEccCCcCcccChhhhccccc-------cccCchhhcCCCCCcEEEccCCcccccccCCCcc
Q 041360 303 GCRLKDIAIVGQLKKLEILSFRDSYIEELPHEIGQLTRL-------VVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSN 375 (561)
Q Consensus 303 ~~~l~~p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L-------~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 375 (561)
+|.++..+.++++++|++|++++|.+..+|....+|+.| ..+|. ++++++|++|++++|.... .+
T Consensus 182 ~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~l~~N~l~~-l~----- 253 (454)
T 1jl5_A 182 NNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKT-LP----- 253 (454)
T ss_dssp SSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCCC--CTTCTTCCEEECCSSCCSS-CC-----
T ss_pred CCcCCcCccccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCcccc--cCCCCCCCEEECCCCcCCc-cc-----
Confidence 888777336888888888888888887777665555555 45553 6788888888888776532 11
Q ss_pred cchHhhcCCCCCcEEEEeeccCcccCcccccccccEEEEEeccccccCCCCccccceEEEecCCccchhhhhhhHHHhhc
Q 041360 376 ASLAELKGLSKLTTLEIQVRDAQILPQDLVLVELQRYKICIGEAWRMWGVTSEISRLVRLHGLENVSTLLENYGMKMLLK 455 (561)
Q Consensus 376 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~ll~ 455 (561)
. ..++|+.|+++.|.+..+|.. +++|+.|++..+. +...... ..++..|++.++. ....+ .+.+
T Consensus 254 ---~---~~~~L~~L~l~~N~l~~l~~~--~~~L~~L~ls~N~-l~~l~~~--~~~L~~L~l~~N~-l~~i~----~~~~ 317 (454)
T 1jl5_A 254 ---D---LPPSLEALNVRDNYLTDLPEL--PQSLTFLDVSENI-FSGLSEL--PPNLYYLNASSNE-IRSLC----DLPP 317 (454)
T ss_dssp ---S---CCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSC-CSEESCC--CTTCCEEECCSSC-CSEEC----CCCT
T ss_pred ---c---cccccCEEECCCCcccccCcc--cCcCCEEECcCCc-cCcccCc--CCcCCEEECcCCc-CCccc----CCcC
Confidence 0 136778888887777766653 4677777774322 2111111 1244455554433 11111 1224
Q ss_pred cccceeeccccCcccccccccCCCCCCCccEEEEecCCccchhhcccCcccCCcCccccccccccccc-cccCCCCCCCC
Q 041360 456 EAEEIHLNELKGVQNAVHELDDGEGFPRLKHLRVESCSEILHIVGSVGRVRRKVFPLLESLSLKKASF-VILHGQKPTAA 534 (561)
Q Consensus 456 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~c~~-~~~~~~~~~~~ 534 (561)
+|+.|+++++ .+..++. .+++|++|+++++ +++.+| . .+++|+.|++.+++- .++..|..+..
T Consensus 318 ~L~~L~Ls~N-~l~~lp~------~~~~L~~L~L~~N-~l~~lp------~--~l~~L~~L~L~~N~l~~l~~ip~~l~~ 381 (454)
T 1jl5_A 318 SLEELNVSNN-KLIELPA------LPPRLERLIASFN-HLAEVP------E--LPQNLKQLHVEYNPLREFPDIPESVED 381 (454)
T ss_dssp TCCEEECCSS-CCSCCCC------CCTTCCEEECCSS-CCSCCC------C--CCTTCCEEECCSSCCSSCCCCCTTCCE
T ss_pred cCCEEECCCC-ccccccc------cCCcCCEEECCCC-cccccc------c--hhhhccEEECCCCCCCcCCCChHHHHh
Confidence 7777777763 3444432 3677888888774 666666 1 467788888877765 43222223333
Q ss_pred C-------------CCCcccCCCccc
Q 041360 535 S-------------KGPEREKPTTSL 547 (561)
Q Consensus 535 l-------------~~L~~L~i~~c~ 547 (561)
+ ++|+.|++.++.
T Consensus 382 L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 382 LRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp EECCC---------------------
T ss_pred hhhcccccccccccCcCCEEECCCCc
Confidence 3 677777776654
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.76 E-value=2e-18 Score=169.47 Aligned_cols=155 Identities=21% Similarity=0.181 Sum_probs=69.7
Q ss_pred CCceEEEccCCCccccCCcc--CCCCccEEEeeccCCCCccc---cHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCc
Q 041360 223 KGPIAISLPHRDIQELPERL--QCPNLELFLLFRKGYGSMQI---SDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQ 297 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~---~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~ 297 (561)
.+++++++++|.+..+|... .+++|++|+++++. +..+ +..+ .++++|++|++++|.+..+|..+..+++|+
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~ 104 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG--LSFKGCCSQSD-FGTTSLKYLDLSFNGVITMSSNFLGLEQLE 104 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC--CCEEEEEEHHH-HSCSCCCEEECCSCSEEEEEEEEETCTTCC
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCCc--cCcccCccccc-ccccccCEEECCCCccccChhhcCCCCCCC
Confidence 34455555555554444432 44455555554443 2221 2222 344555555555555444444444555555
Q ss_pred EEEeCCCCCCC-c--ccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCc
Q 041360 298 TLCLGGCRLKD-I--AIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGS 374 (561)
Q Consensus 298 ~L~l~~~~l~~-p--~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 374 (561)
+|++++|.+.. + ..+..+++|++|++++|.+...+ ...++++++|++|++++|.....
T Consensus 105 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------------~~~~~~l~~L~~L~l~~n~l~~~------ 165 (306)
T 2z66_A 105 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF-------------NGIFNGLSSLEVLKMAGNSFQEN------ 165 (306)
T ss_dssp EEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS-------------TTTTTTCTTCCEEECTTCEEGGG------
T ss_pred EEECCCCcccccccchhhhhccCCCEEECCCCcCCccc-------------hhhcccCcCCCEEECCCCccccc------
Confidence 55555554443 2 24444555555555444433221 11244555555555555543210
Q ss_pred ccchHhhcCCCCCcEEEEeeccCccc
Q 041360 375 NASLAELKGLSKLTTLEIQVRDAQIL 400 (561)
Q Consensus 375 ~~~~~~l~~l~~L~~L~l~~~~~~~~ 400 (561)
.....+..+++|+.|+++.|.+..+
T Consensus 166 -~~~~~~~~l~~L~~L~Ls~n~l~~~ 190 (306)
T 2z66_A 166 -FLPDIFTELRNLTFLDLSQCQLEQL 190 (306)
T ss_dssp -EECSCCTTCTTCCEEECTTSCCCEE
T ss_pred -cchhHHhhCcCCCEEECCCCCcCCc
Confidence 0112344455555555555554443
No 52
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.76 E-value=7.1e-18 Score=167.48 Aligned_cols=255 Identities=15% Similarity=0.151 Sum_probs=162.0
Q ss_pred CCceEEEccCCCccccCC-cc-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEE
Q 041360 223 KGPIAISLPHRDIQELPE-RL-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLC 300 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~ 300 (561)
++++.+++++|.+..++. .+ .+++|++|+++++. +..++...|+++++|++|++++|.+..+|..+. .+|++|+
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~ 129 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK--ISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELR 129 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC--CCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEE
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc--cCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEE
Confidence 689999999999988865 34 89999999999997 666755556999999999999999999998776 8999999
Q ss_pred eCCCCCCC-c-ccccCCCCCcEEEccCCcCcc---cChhhhccccc----------cccCchhhcCCCCCcEEEccCCcc
Q 041360 301 LGGCRLKD-I-AIVGQLKKLEILSFRDSYIEE---LPHEIGQLTRL----------VVIAPNLISKFSQLEELYMGDSFS 365 (561)
Q Consensus 301 l~~~~l~~-p-~~i~~L~~L~~L~l~~~~~~~---lp~~i~~L~~L----------~~l~~~~i~~l~~L~~L~l~~~~~ 365 (561)
+++|.+.. + ..+..+++|++|++++|.+.. .|..++.+ +| ..+|.. -.++|++|++++|..
T Consensus 130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~---~~~~L~~L~l~~n~i 205 (332)
T 2ft3_A 130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKD---LPETLNELHLDHNKI 205 (332)
T ss_dssp CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSS---SCSSCSCCBCCSSCC
T ss_pred CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCcc---ccCCCCEEECCCCcC
Confidence 99999988 5 569999999999999998763 23333322 22 112211 113455555554433
Q ss_pred cccccCCCcccchHhhcCCCCCcEEEEeeccCcccCcc--cccccccEEEEEeccccccCCCCccccceEEEecCCccch
Q 041360 366 QWDKVEGGSNASLAELKGLSKLTTLEIQVRDAQILPQD--LVLVELQRYKICIGEAWRMWGVTSEISRLVRLHGLENVST 443 (561)
Q Consensus 366 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~ 443 (561)
....+ ..+.++++|+.|+++.|.+..++.. ..+++|+.|++ .++. .
T Consensus 206 ~~~~~--------~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L-----------------------~~N~-l 253 (332)
T 2ft3_A 206 QAIEL--------EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL-----------------------DNNK-L 253 (332)
T ss_dssp CCCCT--------TSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEEC-----------------------CSSC-C
T ss_pred CccCH--------HHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEEC-----------------------CCCc-C
Confidence 21111 2344455555555555554443321 13444444444 3322 2
Q ss_pred hhhhhhHHHhhccccceeeccccCccccccccc-C---CCCCCCccEEEEecCCccchhhcccCcccCCcCccccccccc
Q 041360 444 LLENYGMKMLLKEAEEIHLNELKGVQNAVHELD-D---GEGFPRLKHLRVESCSEILHIVGSVGRVRRKVFPLLESLSLK 519 (561)
Q Consensus 444 ~~~~~~~~~ll~~L~~L~l~~~~~~~~~~~~~~-~---~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~ 519 (561)
...+.++..+ ++|+.|+++++ .++.++...+ + ...+++|+.|++.+++ +..+.-.. .....+++|+.|.+.
T Consensus 254 ~~lp~~l~~l-~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~~~~~~~~--~~~~~l~~L~~l~l~ 328 (332)
T 2ft3_A 254 SRVPAGLPDL-KLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP-VPYWEVQP--ATFRCVTDRLAIQFG 328 (332)
T ss_dssp CBCCTTGGGC-TTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS-SCGGGSCG--GGGTTBCCSTTEEC-
T ss_pred eecChhhhcC-ccCCEEECCCC-CCCccChhHccccccccccccccceEeecCc-ccccccCc--ccccccchhhhhhcc
Confidence 2344455555 89999999974 4555554322 0 1126889999999965 43222000 123456777887777
Q ss_pred ccc
Q 041360 520 KAS 522 (561)
Q Consensus 520 ~c~ 522 (561)
++.
T Consensus 329 ~n~ 331 (332)
T 2ft3_A 329 NYK 331 (332)
T ss_dssp ---
T ss_pred ccc
Confidence 664
No 53
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.76 E-value=2.7e-17 Score=183.74 Aligned_cols=299 Identities=14% Similarity=0.070 Sum_probs=186.3
Q ss_pred eEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCC-CCCC-chhhcCCCCCcEEEeCC
Q 041360 226 IAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVR-FSSL-PSSLGRLFNLQTLCLGG 303 (561)
Q Consensus 226 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-i~~l-p~~i~~L~~L~~L~l~~ 303 (561)
+.++.+++++..+|. -.+++++|+++++. +..++...|+++++|++|++++|. +..+ |..++++++|++|+|++
T Consensus 7 ~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~--i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLTQVPQ--VLNTTERLLLSFNY--IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSSCCCS--SCTTCCEEEEESCC--CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCCCCCC--CCCCcCEEECCCCc--CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 456777888888998 56899999999997 666655556999999999999995 4456 78899999999999999
Q ss_pred CCCCC--cccccCCCCCcEEEccCCcCcc-cChh--hhcccccc----------cc-CchhhcCCCCCcEEEccCCcccc
Q 041360 304 CRLKD--IAIVGQLKKLEILSFRDSYIEE-LPHE--IGQLTRLV----------VI-APNLISKFSQLEELYMGDSFSQW 367 (561)
Q Consensus 304 ~~l~~--p~~i~~L~~L~~L~l~~~~~~~-lp~~--i~~L~~L~----------~l-~~~~i~~l~~L~~L~l~~~~~~~ 367 (561)
|.+.. |..++++++|++|++++|.+.. +|.. ++++++|+ .+ +...++++++|++|++++|....
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 99887 7899999999999999998875 4554 66666662 22 22346778888888877776532
Q ss_pred cccCCCcccchHhhcCC--CCCcEEEEeeccCccc-Ccc-cccc------cccEEEEEecc---ccccC-CCC-------
Q 041360 368 DKVEGGSNASLAELKGL--SKLTTLEIQVRDAQIL-PQD-LVLV------ELQRYKICIGE---AWRMW-GVT------- 426 (561)
Q Consensus 368 ~~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~-~~~-~~~~------~L~~L~l~~~~---~~~~~-~~~------- 426 (561)
..+ ..+..+ ++|+.|+++.|.+... +.. ..+. +|+.|++..+. ..+.+ ...
T Consensus 163 ~~~--------~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~ 234 (844)
T 3j0a_A 163 VCE--------HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAF 234 (844)
T ss_dssp CCS--------GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBS
T ss_pred eCH--------HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccc
Confidence 222 223323 6777778777765432 111 1122 37777774331 11100 000
Q ss_pred ----------------------------ccccceEEEecCCccchhhhhhhHHHhhccccceeeccccCcccccccccCC
Q 041360 427 ----------------------------SEISRLVRLHGLENVSTLLENYGMKMLLKEAEEIHLNELKGVQNAVHELDDG 478 (561)
Q Consensus 427 ----------------------------~~~~~l~~L~~~~~~~~~~~~~~~~~ll~~L~~L~l~~~~~~~~~~~~~~~~ 478 (561)
....++..|++.++......+..+..+ ++|+.|++.++. +..++... .
T Consensus 235 ~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~-i~~~~~~~--~ 310 (844)
T 3j0a_A 235 SLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL-KDLKVLNLAYNK-INKIADEA--F 310 (844)
T ss_dssp EEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC-CCCCEEEEESCC-CCEECTTT--T
T ss_pred ceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcC-CCCCEEECCCCc-CCCCChHH--h
Confidence 011234444444433122223333333 666667666543 33322211 3
Q ss_pred CCCCCccEEEEecCCccchhhcccCcccCCcCccccccccccccc-cccCCCCCCCCCCCCcccCCCccc
Q 041360 479 EGFPRLKHLRVESCSEILHIVGSVGRVRRKVFPLLESLSLKKASF-VILHGQKPTAASKGPEREKPTTSL 547 (561)
Q Consensus 479 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~c~~-~~~~~~~~~~~l~~L~~L~i~~c~ 547 (561)
.++++|++|+++++ .++.++. .....+++|+.|++.++.- .+... .+..+++|+.|++.++.
T Consensus 311 ~~l~~L~~L~Ls~N-~l~~~~~----~~~~~l~~L~~L~L~~N~i~~~~~~--~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 311 YGLDNLQVLNLSYN-LLGELYS----SNFYGLPKVAYIDLQKNHIAIIQDQ--TFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp TTCSSCCEEEEESC-CCSCCCS----CSCSSCTTCCEEECCSCCCCCCCSS--CSCSCCCCCEEEEETCC
T ss_pred cCCCCCCEEECCCC-CCCccCH----HHhcCCCCCCEEECCCCCCCccChh--hhcCCCCCCEEECCCCC
Confidence 45677777777774 4444321 1335667777777777754 33222 25667788888876653
No 54
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.76 E-value=3.7e-17 Score=174.31 Aligned_cols=99 Identities=18% Similarity=0.231 Sum_probs=73.2
Q ss_pred CCceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeC
Q 041360 223 KGPIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLG 302 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~ 302 (561)
.+++.++++++.+..+|..+. ++|++|++++|. +..+|. .+++|++|++++|.++.+|. .+++|++|+++
T Consensus 40 ~~l~~L~ls~n~L~~lp~~l~-~~L~~L~L~~N~--l~~lp~----~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 40 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNN--LTSLPA----LPPELRTLEVSGNQLTSLPV---LPPGLLELSIF 109 (622)
T ss_dssp HCCCEEECCSSCCSCCCSCCC-TTCSEEEECSCC--CSCCCC----CCTTCCEEEECSCCCSCCCC---CCTTCCEEEEC
T ss_pred CCCcEEEecCCCcCccChhhC-CCCcEEEecCCC--CCCCCC----cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECc
Confidence 346777888888877776554 778888888876 566665 46778888888888877776 66778888888
Q ss_pred CCCCCC-cccccCCCCCcEEEccCCcCcccChh
Q 041360 303 GCRLKD-IAIVGQLKKLEILSFRDSYIEELPHE 334 (561)
Q Consensus 303 ~~~l~~-p~~i~~L~~L~~L~l~~~~~~~lp~~ 334 (561)
+|.++. |. .+.+|++|++++|.+..+|..
T Consensus 110 ~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~ 139 (622)
T 3g06_A 110 SNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL 139 (622)
T ss_dssp SCCCCCCCC---CCTTCCEEECCSSCCSCCCCC
T ss_pred CCcCCCCCC---CCCCcCEEECCCCCCCcCCCC
Confidence 887777 44 567788888888877776643
No 55
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.75 E-value=2.5e-17 Score=163.34 Aligned_cols=263 Identities=13% Similarity=0.096 Sum_probs=162.5
Q ss_pred CCceEEEccCCCccccCCc-c-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEE
Q 041360 223 KGPIAISLPHRDIQELPER-L-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLC 300 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~ 300 (561)
+.++.+++++|.+..++.. + .+++|++|+++++. +..++...|+++++|++|++++|.++.+|..+. .+|++|+
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~--~~L~~L~ 127 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK--ISKISPGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELR 127 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC--CCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCC--TTCCEEE
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCc--CCeeCHHHhcCCCCCCEEECCCCcCCccChhhc--ccccEEE
Confidence 6899999999999888763 3 89999999999997 666644446999999999999999999998766 7999999
Q ss_pred eCCCCCCC-c-ccccCCCCCcEEEccCCcCcc---cChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcc
Q 041360 301 LGGCRLKD-I-AIVGQLKKLEILSFRDSYIEE---LPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSN 375 (561)
Q Consensus 301 l~~~~l~~-p-~~i~~L~~L~~L~l~~~~~~~---lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 375 (561)
+++|.+.. + ..++++++|++|++++|.+.. .|.. ++++++|++|++++|.... .+
T Consensus 128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~--------------~~~l~~L~~L~l~~n~l~~-l~----- 187 (330)
T 1xku_A 128 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA--------------FQGMKKLSYIRIADTNITT-IP----- 187 (330)
T ss_dssp CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTG--------------GGGCTTCCEEECCSSCCCS-CC-----
T ss_pred CCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhh--------------ccCCCCcCEEECCCCcccc-CC-----
Confidence 99999888 4 679999999999999998763 2333 4445555555555544321 11
Q ss_pred cchHhhcCCCCCcEEEEeeccCcccCcc--cccccccEEEEEeccccccCC--CCccccceEEEecCCccchhhhhhhHH
Q 041360 376 ASLAELKGLSKLTTLEIQVRDAQILPQD--LVLVELQRYKICIGEAWRMWG--VTSEISRLVRLHGLENVSTLLENYGMK 451 (561)
Q Consensus 376 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~--~~~~~~~l~~L~~~~~~~~~~~~~~~~ 451 (561)
..+ .++|+.|+++.|.+..++.. ..+++|+.|++..+. +.... ......++..|++.++. ....+.++.
T Consensus 188 ---~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~ 260 (330)
T 1xku_A 188 ---QGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLA 260 (330)
T ss_dssp ---SSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTT
T ss_pred ---ccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCCc-CccCChhhc
Confidence 001 14455555555544433211 134455555543221 10000 01112233344444433 334445555
Q ss_pred HhhccccceeeccccCccccccccc-C---CCCCCCccEEEEecCCccchhhcccCcccCCcCccccccccccc
Q 041360 452 MLLKEAEEIHLNELKGVQNAVHELD-D---GEGFPRLKHLRVESCSEILHIVGSVGRVRRKVFPLLESLSLKKA 521 (561)
Q Consensus 452 ~ll~~L~~L~l~~~~~~~~~~~~~~-~---~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~c 521 (561)
.+ ++|+.|++.++ .++.++...+ + ...+++|+.|++.+.+ ++.+.-.. .....+++|+.+++.++
T Consensus 261 ~l-~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~-~~~~~i~~--~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 261 DH-KYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNP-VQYWEIQP--STFRCVYVRAAVQLGNY 329 (330)
T ss_dssp TC-SSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSS-SCGGGSCG--GGGTTCCCGGGEEC---
T ss_pred cC-CCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCc-ccccccCc--cccccccceeEEEeccc
Confidence 55 89999999975 4555544322 0 1235889999999854 44332100 12344566777776654
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.75 E-value=5e-18 Score=164.71 Aligned_cols=216 Identities=18% Similarity=0.202 Sum_probs=148.9
Q ss_pred eEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCC-chhhcCCCCCcEEEeCCC
Q 041360 226 IAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSL-PSSLGRLFNLQTLCLGGC 304 (561)
Q Consensus 226 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~ 304 (561)
+.++.+++.+..+|..+ .++|+.|+++++. +..++...|+++++|++|++++|.+..+ |..+..+++|++|++++|
T Consensus 14 ~~~~c~~~~l~~ip~~~-~~~l~~L~l~~n~--i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI-PAASQRIFLHGNR--ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCSSCCTTC-CTTCSEEECTTSC--CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcccCCcCC-CCCceEEEeeCCc--CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 56777777777777644 4688888888887 6677766668888888888888888876 677888888888888888
Q ss_pred C-CCC--cccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhh
Q 041360 305 R-LKD--IAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAEL 381 (561)
Q Consensus 305 ~-l~~--p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 381 (561)
. +.. +..+..+++|++|++++|.+..++. ..++++++|++|++++|....... ..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------~~~~~l~~L~~L~l~~n~l~~~~~--------~~~ 149 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGP-------------GLFRGLAALQYLYLQDNALQALPD--------DTF 149 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCT-------------TTTTTCTTCCEEECCSSCCCCCCT--------TTT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEECH-------------hHhhCCcCCCEEECCCCcccccCH--------hHh
Confidence 6 766 5778888888888888887765532 236778888888888876542221 346
Q ss_pred cCCCCCcEEEEeeccCcccCcc--cccccccEEEEEeccccccCCCCccccceEEEecCCccchhhhhhhHHHhhccccc
Q 041360 382 KGLSKLTTLEIQVRDAQILPQD--LVLVELQRYKICIGEAWRMWGVTSEISRLVRLHGLENVSTLLENYGMKMLLKEAEE 459 (561)
Q Consensus 382 ~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~ll~~L~~ 459 (561)
..+++|+.|+++.|.+..++.. ..+++|+.|++..+. +. ...+..+..+ ++|+.
T Consensus 150 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~----------------------~~~~~~~~~l-~~L~~ 205 (285)
T 1ozn_A 150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR-VA----------------------HVHPHAFRDL-GRLMT 205 (285)
T ss_dssp TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CC----------------------EECTTTTTTC-TTCCE
T ss_pred ccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCc-cc----------------------ccCHhHccCc-ccccE
Confidence 7778888888888887766653 256777777763221 11 1112223333 77788
Q ss_pred eeeccccCcccccccccCCCCCCCccEEEEecC
Q 041360 460 IHLNELKGVQNAVHELDDGEGFPRLKHLRVESC 492 (561)
Q Consensus 460 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 492 (561)
|+++++ .+..++... ...+++|++|++.++
T Consensus 206 L~l~~n-~l~~~~~~~--~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 206 LYLFAN-NLSALPTEA--LAPLRALQYLRLNDN 235 (285)
T ss_dssp EECCSS-CCSCCCHHH--HTTCTTCCEEECCSS
T ss_pred eeCCCC-cCCcCCHHH--cccCcccCEEeccCC
Confidence 888764 344444322 346788888888874
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.73 E-value=4.3e-17 Score=163.26 Aligned_cols=168 Identities=18% Similarity=0.203 Sum_probs=132.7
Q ss_pred EEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCC-chhhcCCCCCcEEEeCCCC
Q 041360 227 AISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSL-PSSLGRLFNLQTLCLGGCR 305 (561)
Q Consensus 227 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~ 305 (561)
..+.+++.+..+|..+ .++|++|+++++. +..++...|+++++|++|++++|.+..+ |..++.+++|++|++++|.
T Consensus 35 ~c~~~~~~l~~iP~~~-~~~L~~L~l~~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 111 (353)
T 2z80_A 35 ICKGSSGSLNSIPSGL-TEAVKSLDLSNNR--ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111 (353)
T ss_dssp EEECCSTTCSSCCTTC-CTTCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeeCCCCCcccccccc-cccCcEEECCCCc--CcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCc
Confidence 4777888888888755 3689999999997 7778876679999999999999999987 5679999999999999999
Q ss_pred CCC-cc-cccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhcC
Q 041360 306 LKD-IA-IVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKG 383 (561)
Q Consensus 306 l~~-p~-~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~ 383 (561)
++. +. .++++++|++|++++|.+..+|.. ..++++++|++|++++|....... ...+.+
T Consensus 112 l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~------------~~~~~l~~L~~L~l~~n~~~~~~~-------~~~~~~ 172 (353)
T 2z80_A 112 LSNLSSSWFKPLSSLTFLNLLGNPYKTLGET------------SLFSHLTKLQILRVGNMDTFTKIQ-------RKDFAG 172 (353)
T ss_dssp CSSCCHHHHTTCTTCSEEECTTCCCSSSCSS------------CSCTTCTTCCEEEEEESSSCCEEC-------TTTTTT
T ss_pred CCcCCHhHhCCCccCCEEECCCCCCcccCch------------hhhccCCCCcEEECCCCccccccC-------HHHccC
Confidence 988 64 489999999999999988776630 226788999999999885332222 246778
Q ss_pred CCCCcEEEEeeccCcccC-cc-cccccccEEEEEe
Q 041360 384 LSKLTTLEIQVRDAQILP-QD-LVLVELQRYKICI 416 (561)
Q Consensus 384 l~~L~~L~l~~~~~~~~~-~~-~~~~~L~~L~l~~ 416 (561)
+++|+.|+++.|.+.... .. ..+++|+.|++..
T Consensus 173 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 207 (353)
T 2z80_A 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM 207 (353)
T ss_dssp CCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred CCCCCEEECCCCCcCccCHHHHhccccCCeecCCC
Confidence 899999999999887653 22 2567777777743
No 58
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.73 E-value=1.9e-18 Score=170.33 Aligned_cols=264 Identities=11% Similarity=0.007 Sum_probs=142.5
Q ss_pred CceEEEccCCCccccCC-cc-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEe
Q 041360 224 GPIAISLPHRDIQELPE-RL-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCL 301 (561)
Q Consensus 224 ~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l 301 (561)
+++++++++|.+..++. .+ .+++|++|+++++. +...++ |+.+++|++|++++|.++.+|. .++|++|++
T Consensus 35 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l 106 (317)
T 3o53_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV--LYETLD--LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (317)
T ss_dssp GCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC--CEEEEE--ETTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred CCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc--CCcchh--hhhcCCCCEEECcCCccccccC----CCCcCEEEC
Confidence 45555555555544432 12 45555555555554 333332 3455555555555555444332 245555555
Q ss_pred CCCCCCC-cccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHh
Q 041360 302 GGCRLKD-IAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAE 380 (561)
Q Consensus 302 ~~~~l~~-p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 380 (561)
++|.+.. +.. .+++|++|++++|.+..++ ...++.+++|++|++++|......+ ..
T Consensus 107 ~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~-------------~~~~~~l~~L~~L~Ls~N~l~~~~~--------~~ 163 (317)
T 3o53_A 107 ANNNISRVSCS--RGQGKKNIYLANNKITMLR-------------DLDEGCRSRVQYLDLKLNEIDTVNF--------AE 163 (317)
T ss_dssp CSSCCSEEEEC--CCSSCEEEECCSSCCCSGG-------------GBCTGGGSSEEEEECTTSCCCEEEG--------GG
T ss_pred CCCccCCcCcc--ccCCCCEEECCCCCCCCcc-------------chhhhccCCCCEEECCCCCCCcccH--------HH
Confidence 5555444 211 1344555555555444332 1224556667777776665432111 22
Q ss_pred h-cCCCCCcEEEEeeccCcccCcccccccccEEEEEeccccccCCCCccccceEEEecCCccchhhhhhhHHHhhccccc
Q 041360 381 L-KGLSKLTTLEIQVRDAQILPQDLVLVELQRYKICIGEAWRMWGVTSEISRLVRLHGLENVSTLLENYGMKMLLKEAEE 459 (561)
Q Consensus 381 l-~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~ll~~L~~ 459 (561)
+ ..+++|+.|+++.|.++.++....+++|+.|++..+ . ....+..+..+ ++|+.
T Consensus 164 ~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N-----------------------~-l~~l~~~~~~l-~~L~~ 218 (317)
T 3o53_A 164 LAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN-----------------------K-LAFMGPEFQSA-AGVTW 218 (317)
T ss_dssp GGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSS-----------------------C-CCEECGGGGGG-TTCSE
T ss_pred HhhccCcCCEEECCCCcCcccccccccccCCEEECCCC-----------------------c-CCcchhhhccc-CcccE
Confidence 2 345667777777766666555555666666655322 2 11223334444 89999
Q ss_pred eeeccccCcccccccccCCCCCCCccEEEEecCCcc-chhhcccCcccCCcCccccccccccccc-cccCCCCCCCCCCC
Q 041360 460 IHLNELKGVQNAVHELDDGEGFPRLKHLRVESCSEI-LHIVGSVGRVRRKVFPLLESLSLKKASF-VILHGQKPTAASKG 537 (561)
Q Consensus 460 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~l~~~~~~~~~~~~~~L~~L~l~~c~~-~~~~~~~~~~~l~~ 537 (561)
|+++++ .+..++.. ...+++|+.|++++++-- ..++. ....+++|+.|.+.+++. .- ........+.
T Consensus 219 L~L~~N-~l~~l~~~---~~~l~~L~~L~l~~N~~~~~~~~~-----~~~~~~~L~~l~l~~~~~l~~--~~~~~~~~~~ 287 (317)
T 3o53_A 219 ISLRNN-KLVLIEKA---LRFSQNLEHFDLRGNGFHCGTLRD-----FFSKNQRVQTVAKQTVKKLTG--QNEEECTVPT 287 (317)
T ss_dssp EECTTS-CCCEECTT---CCCCTTCCEEECTTCCCBHHHHHH-----HHHTCHHHHHHHHHHHHHHHS--SSSCCCSSTT
T ss_pred EECcCC-cccchhhH---hhcCCCCCEEEccCCCccCcCHHH-----HHhccccceEEECCCchhccC--CchhccCCCc
Confidence 999985 56666654 457899999999986433 23331 336788999999988876 11 0111122334
Q ss_pred CcccCCCcccccccccc
Q 041360 538 PEREKPTTSLGFNEIIA 554 (561)
Q Consensus 538 L~~L~i~~c~~l~~~~~ 554 (561)
+....-.+|..+..-|+
T Consensus 288 ~~~~~~~cc~~l~~~~~ 304 (317)
T 3o53_A 288 LGHYGAYCCEDLPAPFA 304 (317)
T ss_dssp CEEETTEEEBCCTTTHH
T ss_pred eecccceeeccCChhHH
Confidence 45555567777765543
No 59
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.72 E-value=2.6e-17 Score=159.72 Aligned_cols=170 Identities=21% Similarity=0.333 Sum_probs=131.0
Q ss_pred CCceEEEccCCCccccCCc-c-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCC-CCCC-chhhcCCCCCcE
Q 041360 223 KGPIAISLPHRDIQELPER-L-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVR-FSSL-PSSLGRLFNLQT 298 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-i~~l-p~~i~~L~~L~~ 298 (561)
.++++++++++.+..++.. + .+++|++|+++++. +..++...|+++++|++|++++|. +..+ |..+..+++|++
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~ 109 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV--LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc--cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCE
Confidence 7899999999999888764 3 78999999999997 666655556999999999999997 8887 678999999999
Q ss_pred EEeCCCCCCC--cccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCccc
Q 041360 299 LCLGGCRLKD--IAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNA 376 (561)
Q Consensus 299 L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 376 (561)
|++++|.+.. +..+.++++|++|++++|.+..+|.. .++++++|++|++++|.......
T Consensus 110 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------------~~~~l~~L~~L~l~~n~l~~~~~------ 170 (285)
T 1ozn_A 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDD-------------TFRDLGNLTHLFLHGNRISSVPE------ 170 (285)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-------------TTTTCTTCCEEECCSSCCCEECT------
T ss_pred EECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHh-------------HhccCCCccEEECCCCcccccCH------
Confidence 9999999888 57799999999999999988876643 25666777777777765432111
Q ss_pred chHhhcCCCCCcEEEEeeccCcccC-ccc-ccccccEEEEE
Q 041360 377 SLAELKGLSKLTTLEIQVRDAQILP-QDL-VLVELQRYKIC 415 (561)
Q Consensus 377 ~~~~l~~l~~L~~L~l~~~~~~~~~-~~~-~~~~L~~L~l~ 415 (561)
..+..+++|+.|+++.|.+..+. ..+ .+++|+.|++.
T Consensus 171 --~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 209 (285)
T 1ozn_A 171 --RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209 (285)
T ss_dssp --TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred --HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCC
Confidence 23566677777777777666542 222 45666666663
No 60
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.72 E-value=2.6e-16 Score=162.62 Aligned_cols=270 Identities=19% Similarity=0.182 Sum_probs=184.3
Q ss_pred CCceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeC
Q 041360 223 KGPIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLG 302 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~ 302 (561)
++++++++++|.+..+|.. .++|++|+++++. +..++. -.++|++|++++|.++.+| +++.+.+|++|+++
T Consensus 91 ~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~--l~~l~~----~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~ 161 (454)
T 1jl5_A 91 PHLESLVASCNSLTELPEL--PQSLKSLLVDNNN--LKALSD----LPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVD 161 (454)
T ss_dssp TTCSEEECCSSCCSSCCCC--CTTCCEEECCSSC--CSCCCS----CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECC
T ss_pred CCCCEEEccCCcCCccccc--cCCCcEEECCCCc--cCcccC----CCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECC
Confidence 6888899988888877753 4788899998886 555553 1268899999999888888 58889999999999
Q ss_pred CCCCCC-cccccCCCCCcEEEccCCcCcccChhhhccccccccCc--hhh----cCCCCCcEEEccCCcccccccCCCcc
Q 041360 303 GCRLKD-IAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAP--NLI----SKFSQLEELYMGDSFSQWDKVEGGSN 375 (561)
Q Consensus 303 ~~~l~~-p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~--~~i----~~l~~L~~L~l~~~~~~~~~~~~~~~ 375 (561)
+|.++. |..+ .+|++|++++|.+..+| +++++++|+.+.- +.+ ...++|++|++++|... ..+
T Consensus 162 ~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~-~lp----- 231 (454)
T 1jl5_A 162 NNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE-ELP----- 231 (454)
T ss_dssp SSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCS-SCC-----
T ss_pred CCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCC-ccc-----
Confidence 988877 5443 48889999988888887 5677666632211 001 11247788888777543 221
Q ss_pred cchHhhcCCCCCcEEEEeeccCcccCcccccccccEEEEEeccccccCCCCccccceEEEecCCccchhhhhhhHHHhhc
Q 041360 376 ASLAELKGLSKLTTLEIQVRDAQILPQDLVLVELQRYKICIGEAWRMWGVTSEISRLVRLHGLENVSTLLENYGMKMLLK 455 (561)
Q Consensus 376 ~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~ll~ 455 (561)
.++.+++|+.|+++.|.+..+|. .+++|+.|++..+. +...... ..++..|++.++. ....+ .+.+
T Consensus 232 ----~~~~l~~L~~L~l~~N~l~~l~~--~~~~L~~L~l~~N~-l~~l~~~--~~~L~~L~ls~N~-l~~l~----~~~~ 297 (454)
T 1jl5_A 232 ----ELQNLPFLTTIYADNNLLKTLPD--LPPSLEALNVRDNY-LTDLPEL--PQSLTFLDVSENI-FSGLS----ELPP 297 (454)
T ss_dssp ----CCTTCTTCCEEECCSSCCSSCCS--CCTTCCEEECCSSC-CSCCCCC--CTTCCEEECCSSC-CSEES----CCCT
T ss_pred ----ccCCCCCCCEEECCCCcCCcccc--cccccCEEECCCCc-ccccCcc--cCcCCEEECcCCc-cCccc----CcCC
Confidence 36778888999998888877765 34788888885332 2222111 2455566665543 11111 1236
Q ss_pred cccceeeccccCcccccccccCCCCCCCccEEEEecCCccchhhcccCcccCCcCccccccccccccc-cccCCCCCCCC
Q 041360 456 EAEEIHLNELKGVQNAVHELDDGEGFPRLKHLRVESCSEILHIVGSVGRVRRKVFPLLESLSLKKASF-VILHGQKPTAA 534 (561)
Q Consensus 456 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~c~~-~~~~~~~~~~~ 534 (561)
+|+.|+++++ .+..++ ...++|++|++++ .+++.+| ..+++|+.|++.+|.- .++. .
T Consensus 298 ~L~~L~l~~N-~l~~i~------~~~~~L~~L~Ls~-N~l~~lp--------~~~~~L~~L~L~~N~l~~lp~------~ 355 (454)
T 1jl5_A 298 NLYYLNASSN-EIRSLC------DLPPSLEELNVSN-NKLIELP--------ALPPRLERLIASFNHLAEVPE------L 355 (454)
T ss_dssp TCCEEECCSS-CCSEEC------CCCTTCCEEECCS-SCCSCCC--------CCCTTCCEEECCSSCCSCCCC------C
T ss_pred cCCEEECcCC-cCCccc------CCcCcCCEEECCC-Ccccccc--------ccCCcCCEEECCCCccccccc------h
Confidence 7888888864 333332 1235899999998 4677776 3479999999999864 4322 4
Q ss_pred CCCCcccCCCccc
Q 041360 535 SKGPEREKPTTSL 547 (561)
Q Consensus 535 l~~L~~L~i~~c~ 547 (561)
+++|+.|++.++.
T Consensus 356 l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 356 PQNLKQLHVEYNP 368 (454)
T ss_dssp CTTCCEEECCSSC
T ss_pred hhhccEEECCCCC
Confidence 6899999998764
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.72 E-value=3.4e-17 Score=169.75 Aligned_cols=218 Identities=19% Similarity=0.201 Sum_probs=166.8
Q ss_pred CCceEEEccCCCccccCCc-c-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchh-hcCCCCCcEE
Q 041360 223 KGPIAISLPHRDIQELPER-L-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSS-LGRLFNLQTL 299 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~-i~~L~~L~~L 299 (561)
.+++.|++++|.+..++.. + .+++|+.|+++++. +..++...|.++++|++|++++|.+..+|.. +..+++|++|
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 152 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS--IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLREL 152 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEE
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc--cCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEE
Confidence 7899999999999887544 3 89999999999997 7777766679999999999999999998764 8899999999
Q ss_pred EeCCCCCCC-c-ccccCCCCCcEEEccCC-cCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCccc
Q 041360 300 CLGGCRLKD-I-AIVGQLKKLEILSFRDS-YIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNA 376 (561)
Q Consensus 300 ~l~~~~l~~-p-~~i~~L~~L~~L~l~~~-~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 376 (561)
++++|.+.. + ..+.++++|++|++++| .+..+| ...+.++++|++|++++|....
T Consensus 153 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~-------------~~~~~~l~~L~~L~L~~n~l~~--------- 210 (452)
T 3zyi_A 153 WLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS-------------EGAFEGLFNLKYLNLGMCNIKD--------- 210 (452)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC-------------TTTTTTCTTCCEEECTTSCCSS---------
T ss_pred ECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC-------------hhhccCCCCCCEEECCCCcccc---------
Confidence 999999988 4 68999999999999986 454443 3447889999999999986541
Q ss_pred chHhhcCCCCCcEEEEeeccCcccCcc--cccccccEEEEEeccccccCCCCccccceEEEecCCccchhhhhhhHHHhh
Q 041360 377 SLAELKGLSKLTTLEIQVRDAQILPQD--LVLVELQRYKICIGEAWRMWGVTSEISRLVRLHGLENVSTLLENYGMKMLL 454 (561)
Q Consensus 377 ~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~ll 454 (561)
+..+..+++|+.|+++.|.+..++.. ..+++|+.|++..+. + ....+..+..+
T Consensus 211 -~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l----------------------~~~~~~~~~~l- 265 (452)
T 3zyi_A 211 -MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-V----------------------SLIERNAFDGL- 265 (452)
T ss_dssp -CCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC-C----------------------CEECTTTTTTC-
T ss_pred -cccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc-C----------------------ceECHHHhcCC-
Confidence 13477889999999999988776443 267778877763221 1 11112233333
Q ss_pred ccccceeeccccCcccccccccCCCCCCCccEEEEecC
Q 041360 455 KEAEEIHLNELKGVQNAVHELDDGEGFPRLKHLRVESC 492 (561)
Q Consensus 455 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 492 (561)
++|+.|+++++ .+..++... ...+++|++|++.++
T Consensus 266 ~~L~~L~L~~N-~l~~~~~~~--~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 266 ASLVELNLAHN-NLSSLPHDL--FTPLRYLVELHLHHN 300 (452)
T ss_dssp TTCCEEECCSS-CCSCCCTTS--STTCTTCCEEECCSS
T ss_pred CCCCEEECCCC-cCCccChHH--hccccCCCEEEccCC
Confidence 78888888875 455555433 356888888888874
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.71 E-value=4.1e-17 Score=168.56 Aligned_cols=218 Identities=18% Similarity=0.229 Sum_probs=166.5
Q ss_pred CCceEEEccCCCccccCCc-c-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCch-hhcCCCCCcEE
Q 041360 223 KGPIAISLPHRDIQELPER-L-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPS-SLGRLFNLQTL 299 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~-~i~~L~~L~~L 299 (561)
..++.+++++|.+..++.. + .+++|++|+++++. +..++...|.++++|++|++++|.++.+|. .+..+.+|++|
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~--i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 141 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH--IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKEL 141 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC--CCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEE
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc--CCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCcee
Confidence 7899999999999888753 3 89999999999997 777877777999999999999999999876 68999999999
Q ss_pred EeCCCCCCC-c-ccccCCCCCcEEEccCC-cCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCccc
Q 041360 300 CLGGCRLKD-I-AIVGQLKKLEILSFRDS-YIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNA 376 (561)
Q Consensus 300 ~l~~~~l~~-p-~~i~~L~~L~~L~l~~~-~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 376 (561)
++++|.+.. + ..+.++++|++|++++| .+..+| ...+.++++|++|++++|... ..
T Consensus 142 ~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~-------------~~~~~~l~~L~~L~L~~n~l~-~~------- 200 (440)
T 3zyj_A 142 WLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS-------------EGAFEGLSNLRYLNLAMCNLR-EI------- 200 (440)
T ss_dssp ECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC-------------TTTTTTCSSCCEEECTTSCCS-SC-------
T ss_pred eCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC-------------cchhhcccccCeecCCCCcCc-cc-------
Confidence 999999988 4 68999999999999986 444443 344788999999999998654 11
Q ss_pred chHhhcCCCCCcEEEEeeccCcccCcc--cccccccEEEEEeccccccCCCCccccceEEEecCCccchhhhhhhHHHhh
Q 041360 377 SLAELKGLSKLTTLEIQVRDAQILPQD--LVLVELQRYKICIGEAWRMWGVTSEISRLVRLHGLENVSTLLENYGMKMLL 454 (561)
Q Consensus 377 ~~~~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~ll 454 (561)
..+..+++|+.|+++.|.+..++.. ..+++|+.|++..+. +. ...+..+..+
T Consensus 201 --~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~----------------------~~~~~~~~~l- 254 (440)
T 3zyj_A 201 --PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQ----------------------VIERNAFDNL- 254 (440)
T ss_dssp --CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CC----------------------EECTTSSTTC-
T ss_pred --cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc-ee----------------------EEChhhhcCC-
Confidence 2477889999999999988776433 267788887763221 11 1112223333
Q ss_pred ccccceeeccccCcccccccccCCCCCCCccEEEEecC
Q 041360 455 KEAEEIHLNELKGVQNAVHELDDGEGFPRLKHLRVESC 492 (561)
Q Consensus 455 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 492 (561)
++|+.|+++++ .+..++... ...+++|+.|++.++
T Consensus 255 ~~L~~L~L~~N-~l~~~~~~~--~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 255 QSLVEINLAHN-NLTLLPHDL--FTPLHHLERIHLHHN 289 (440)
T ss_dssp TTCCEEECTTS-CCCCCCTTT--TSSCTTCCEEECCSS
T ss_pred CCCCEEECCCC-CCCccChhH--hccccCCCEEEcCCC
Confidence 78888888874 455555433 356788888888763
No 63
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.71 E-value=3.7e-17 Score=160.36 Aligned_cols=166 Identities=18% Similarity=0.159 Sum_probs=137.6
Q ss_pred EEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCC---chhhcCCCCCcEEEeCC
Q 041360 227 AISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSL---PSSLGRLFNLQTLCLGG 303 (561)
Q Consensus 227 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l---p~~i~~L~~L~~L~l~~ 303 (561)
.+..+++.+..+|..+ .++|+.|+++++. +..+|..+|+++++|++|++++|.+... |..+..+.+|++|++++
T Consensus 11 ~l~c~~~~l~~ip~~~-~~~l~~L~L~~n~--l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGI-PSSATRLELESNK--LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCSSCCSCC-CTTCCEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcccCCCCC-CCCCCEEECCCCc--cCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 5777778888888755 3789999999997 7789988889999999999999999865 68888999999999999
Q ss_pred CCCCC-cccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhc
Q 041360 304 CRLKD-IAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELK 382 (561)
Q Consensus 304 ~~l~~-p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~ 382 (561)
|.+.. |..+..+++|++|++++|.+..+|. ...+.++++|++|++++|......+ ..+.
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~------------~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~ 147 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSE------------FSVFLSLRNLIYLDISHTHTRVAFN--------GIFN 147 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEESSTT------------TTTTTTCTTCCEEECTTSCCEECST--------TTTT
T ss_pred CccccChhhcCCCCCCCEEECCCCccccccc------------chhhhhccCCCEEECCCCcCCccch--------hhcc
Confidence 99888 8889999999999999998776653 1237789999999999987643332 4577
Q ss_pred CCCCCcEEEEeeccCcc--cCccc-ccccccEEEEE
Q 041360 383 GLSKLTTLEIQVRDAQI--LPQDL-VLVELQRYKIC 415 (561)
Q Consensus 383 ~l~~L~~L~l~~~~~~~--~~~~~-~~~~L~~L~l~ 415 (561)
.+++|+.|+++.|.+.. .|..+ .+++|+.|++.
T Consensus 148 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls 183 (306)
T 2z66_A 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183 (306)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred cCcCCCEEECCCCccccccchhHHhhCcCCCEEECC
Confidence 88999999999988764 45443 77889998884
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.69 E-value=4.7e-16 Score=165.83 Aligned_cols=161 Identities=20% Similarity=0.179 Sum_probs=120.0
Q ss_pred CCceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeC
Q 041360 223 KGPIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLG 302 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~ 302 (561)
.+++.|++++|.+..+|. .+++|++|++++|. +..+|. .+++|++|++++|.+..+|. .+.+|++|+++
T Consensus 61 ~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~--l~~lp~----~l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~ 129 (622)
T 3g06_A 61 AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQ--LTSLPV----LPPGLLELSIFSNPLTHLPA---LPSGLCKLWIF 129 (622)
T ss_dssp TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCC--CSCCCC----CCTTCCEEEECSCCCCCCCC---CCTTCCEEECC
T ss_pred CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCc--CCcCCC----CCCCCCEEECcCCcCCCCCC---CCCCcCEEECC
Confidence 789999999999999988 68999999999997 777875 78999999999999999987 67899999999
Q ss_pred CCCCCC-cccccCCCCCcEEEccCCcCcccChhhhccccc-------cccCchhhcCCCCCcEEEccCCcccccccCCCc
Q 041360 303 GCRLKD-IAIVGQLKKLEILSFRDSYIEELPHEIGQLTRL-------VVIAPNLISKFSQLEELYMGDSFSQWDKVEGGS 374 (561)
Q Consensus 303 ~~~l~~-p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L-------~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~ 374 (561)
+|.++. |.. +++|++|++++|.+..+|..+.+|+.| ..+| ..+++|+.|++++|.+.. ++
T Consensus 130 ~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~-l~---- 197 (622)
T 3g06_A 130 GNQLTSLPVL---PPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLAS-LP---- 197 (622)
T ss_dssp SSCCSCCCCC---CTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSC-CC----
T ss_pred CCCCCcCCCC---CCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCC-CC----
Confidence 999988 654 489999999999998888655555544 2222 234666666666665431 11
Q ss_pred ccchHhhcCCCCCcEEEEeeccCcccCcccccccccEEEEE
Q 041360 375 NASLAELKGLSKLTTLEIQVRDAQILPQDLVLVELQRYKIC 415 (561)
Q Consensus 375 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 415 (561)
..+++|+.|.++.|.+..+|. .+++|+.|++.
T Consensus 198 -------~~~~~L~~L~L~~N~l~~l~~--~~~~L~~L~Ls 229 (622)
T 3g06_A 198 -------TLPSELYKLWAYNNRLTSLPA--LPSGLKELIVS 229 (622)
T ss_dssp -------CCCTTCCEEECCSSCCSSCCC--CCTTCCEEECC
T ss_pred -------CccchhhEEECcCCcccccCC--CCCCCCEEEcc
Confidence 013566666666666665554 23556666653
No 65
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.67 E-value=1.3e-15 Score=164.84 Aligned_cols=135 Identities=20% Similarity=0.254 Sum_probs=111.3
Q ss_pred EEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCch-hhcCCCCCcEEEeCCCCC
Q 041360 228 ISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPS-SLGRLFNLQTLCLGGCRL 306 (561)
Q Consensus 228 l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~l 306 (561)
++-++.++..+|..+ -+++++|+++++. +..++...|+++++|++|+|++|.|+.+|+ .+..|++|++|+|++|++
T Consensus 36 ~~c~~~~l~~vP~~l-p~~~~~LdLs~N~--i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 36 YQCMELNFYKIPDNL-PFSTKNLDLSFNP--LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp EECTTSCCSSCCSSS-CTTCCEEECTTSC--CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EECCCCCcCccCCCC-CcCCCEEEeeCCC--CCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence 344445667777654 2579999999997 888988778999999999999999999865 689999999999999999
Q ss_pred CC-c-ccccCCCCCcEEEccCCcCcccChh-hhcccccc----------ccC-chhhcCCCCCcEEEccCCcc
Q 041360 307 KD-I-AIVGQLKKLEILSFRDSYIEELPHE-IGQLTRLV----------VIA-PNLISKFSQLEELYMGDSFS 365 (561)
Q Consensus 307 ~~-p-~~i~~L~~L~~L~l~~~~~~~lp~~-i~~L~~L~----------~l~-~~~i~~l~~L~~L~l~~~~~ 365 (561)
+. | ..++++++|++|++++|++..+|.. ++++++|+ .++ +..++.+++|++|++++|.+
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l 185 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 185 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence 98 5 6789999999999999999999864 77777772 211 23478899999999998854
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.67 E-value=9.7e-16 Score=147.25 Aligned_cols=169 Identities=21% Similarity=0.342 Sum_probs=85.7
Q ss_pred CCceEEEccCCCccccCCc-c-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCch-hhcCCCCCcEE
Q 041360 223 KGPIAISLPHRDIQELPER-L-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPS-SLGRLFNLQTL 299 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~-~i~~L~~L~~L 299 (561)
.++++|++++|.+..++.. + .+++|++|+++++. +..++..+|+++++|++|++++|.+..+|. .+..+++|++|
T Consensus 37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 114 (270)
T 2o6q_A 37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK--LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAEL 114 (270)
T ss_dssp TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC--CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEE
T ss_pred CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc--cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEE
Confidence 3455555555555444432 2 44555555555554 444444444555555555555555555433 23445555555
Q ss_pred EeCCCCCCC-c-ccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccc
Q 041360 300 CLGGCRLKD-I-AIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNAS 377 (561)
Q Consensus 300 ~l~~~~l~~-p-~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 377 (561)
++++|.+.. + ..++.+++|++|++++|.+..+| ...++.+++|++|++++|......+
T Consensus 115 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-------------~~~~~~l~~L~~L~L~~n~l~~~~~------- 174 (270)
T 2o6q_A 115 RLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLP-------------KGVFDKLTSLKELRLYNNQLKRVPE------- 174 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-------------TTTTTTCTTCCEEECCSSCCSCCCT-------
T ss_pred ECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccC-------------HhHccCCcccceeEecCCcCcEeCh-------
Confidence 555555444 2 33455555555555555444333 2224566666666666664432111
Q ss_pred hHhhcCCCCCcEEEEeeccCcccCccc--ccccccEEEE
Q 041360 378 LAELKGLSKLTTLEIQVRDAQILPQDL--VLVELQRYKI 414 (561)
Q Consensus 378 ~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l 414 (561)
..+.++++|+.|+++.|.+..++... .+++|+.|++
T Consensus 175 -~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 212 (270)
T 2o6q_A 175 -GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212 (270)
T ss_dssp -TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred -hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEe
Confidence 23555666666666666666555432 4556666555
No 67
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.66 E-value=2.1e-15 Score=147.74 Aligned_cols=176 Identities=16% Similarity=0.212 Sum_probs=127.8
Q ss_pred CCceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeC
Q 041360 223 KGPIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLG 302 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~ 302 (561)
++++++++.++.+..++....+++|++|+++++. +..++. +.++++|++|++++|.+..+| .+..+++|++|+++
T Consensus 41 ~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~--i~~~~~--~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQ--ITDLAP--LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLT 115 (308)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC--CCCCGG--GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECT
T ss_pred CCcCEEEeeCCCccCchhhhccCCCCEEEccCCc--CCCChh--HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECC
Confidence 5788888888888887754478888999998886 667776 588888999999988888876 58888889999999
Q ss_pred CCCCCCcccccCCCCCcEEEccCCcCcccChhhhccccc----------cccCchhhcCCCCCcEEEccCCcccccccCC
Q 041360 303 GCRLKDIAIVGQLKKLEILSFRDSYIEELPHEIGQLTRL----------VVIAPNLISKFSQLEELYMGDSFSQWDKVEG 372 (561)
Q Consensus 303 ~~~l~~p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L----------~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~ 372 (561)
+|.+...+.+..+++|++|++++|.+..+|. ++.+++| ..++. +.++++|+.|++++|....
T Consensus 116 ~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~----- 187 (308)
T 1h6u_A 116 STQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD----- 187 (308)
T ss_dssp TSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-----
T ss_pred CCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc-----
Confidence 8888884448888889999998888877764 4444444 12222 5667777777777765421
Q ss_pred CcccchHhhcCCCCCcEEEEeeccCcccCcccccccccEEEEEe
Q 041360 373 GSNASLAELKGLSKLTTLEIQVRDAQILPQDLVLVELQRYKICI 416 (561)
Q Consensus 373 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~ 416 (561)
+..+..+++|+.|+++.|.+..++....+++|+.|++..
T Consensus 188 -----~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~ 226 (308)
T 1h6u_A 188 -----ISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTN 226 (308)
T ss_dssp -----CGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEE
T ss_pred -----ChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccC
Confidence 112566677777777777776666555667777777643
No 68
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.66 E-value=5.4e-16 Score=151.92 Aligned_cols=195 Identities=18% Similarity=0.216 Sum_probs=151.6
Q ss_pred CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeCCCCCCCcccccCCCCCcEEE
Q 041360 243 QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLGGCRLKDIAIVGQLKKLEILS 322 (561)
Q Consensus 243 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~p~~i~~L~~L~~L~ 322 (561)
++++|+.|+++++. +..++. +..+++|++|++++|.+..++. +..+++|++|++++|.+..++.+..+++|++|+
T Consensus 39 ~l~~L~~L~l~~~~--i~~l~~--~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~ 113 (308)
T 1h6u_A 39 DLDGITTLSAFGTG--VTTIEG--VQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLD 113 (308)
T ss_dssp HHHTCCEEECTTSC--CCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEE
T ss_pred HcCCcCEEEeeCCC--ccCchh--hhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEE
Confidence 67899999999997 677774 5899999999999999999988 999999999999999998866899999999999
Q ss_pred ccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhcCCCCCcEEEEeeccCcccCc
Q 041360 323 FRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIQVRDAQILPQ 402 (561)
Q Consensus 323 l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 402 (561)
+++|.+..+|. ++.+++|++|++++|.... ...+..+++|+.|+++.|.+..++.
T Consensus 114 l~~n~l~~~~~---------------l~~l~~L~~L~l~~n~l~~----------~~~l~~l~~L~~L~l~~n~l~~~~~ 168 (308)
T 1h6u_A 114 LTSTQITDVTP---------------LAGLSNLQVLYLDLNQITN----------ISPLAGLTNLQYLSIGNAQVSDLTP 168 (308)
T ss_dssp CTTSCCCCCGG---------------GTTCTTCCEEECCSSCCCC----------CGGGGGCTTCCEEECCSSCCCCCGG
T ss_pred CCCCCCCCchh---------------hcCCCCCCEEECCCCccCc----------CccccCCCCccEEEccCCcCCCChh
Confidence 99998876541 6788899999999986531 1227788999999999998888777
Q ss_pred ccccccccEEEEEeccccccCCCCccccceEEEecCCccchhhhhhhHHHhhccccceeeccccCcccccccccCCCCCC
Q 041360 403 DLVLVELQRYKICIGEAWRMWGVTSEISRLVRLHGLENVSTLLENYGMKMLLKEAEEIHLNELKGVQNAVHELDDGEGFP 482 (561)
Q Consensus 403 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~ll~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 482 (561)
...+++|+.|++..+. +... ..+.. +++|+.|+++++ .+..++. ...++
T Consensus 169 l~~l~~L~~L~l~~n~-l~~~------------------------~~l~~-l~~L~~L~L~~N-~l~~~~~----l~~l~ 217 (308)
T 1h6u_A 169 LANLSKLTTLKADDNK-ISDI------------------------SPLAS-LPNLIEVHLKNN-QISDVSP----LANTS 217 (308)
T ss_dssp GTTCTTCCEEECCSSC-CCCC------------------------GGGGG-CTTCCEEECTTS-CCCBCGG----GTTCT
T ss_pred hcCCCCCCEEECCCCc-cCcC------------------------hhhcC-CCCCCEEEccCC-ccCcccc----ccCCC
Confidence 6677888888874321 1100 01223 378888888875 3444443 45688
Q ss_pred CccEEEEecCCccchhh
Q 041360 483 RLKHLRVESCSEILHIV 499 (561)
Q Consensus 483 ~L~~L~l~~c~~l~~l~ 499 (561)
+|+.|++.++ .++..|
T Consensus 218 ~L~~L~l~~N-~i~~~~ 233 (308)
T 1h6u_A 218 NLFIVTLTNQ-TITNQP 233 (308)
T ss_dssp TCCEEEEEEE-EEECCC
T ss_pred CCCEEEccCC-eeecCC
Confidence 9999999884 455544
No 69
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.66 E-value=9.4e-16 Score=148.75 Aligned_cols=167 Identities=20% Similarity=0.230 Sum_probs=103.9
Q ss_pred CCceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeC
Q 041360 223 KGPIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLG 302 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~ 302 (561)
.+++.+++.++.+..+|..+. ++++.|+++++. +..++...|.++++|++|++++|.++.+|.. +.+++|++|+++
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~-~~l~~L~L~~N~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls 85 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLP-KDTTILHLSENL--LYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLS 85 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCC-TTCCEEECTTSC--CSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECC
T ss_pred CCccEEECCCCCCCcCCCCCC-CCCCEEEcCCCc--CCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECC
Confidence 456777777777777776553 677777777776 5556555567777888888887777776654 677778888887
Q ss_pred CCCCCC-cccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhh
Q 041360 303 GCRLKD-IAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAEL 381 (561)
Q Consensus 303 ~~~l~~-p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 381 (561)
+|.+.. |..+..+++|++|++++|.+..+|.+ .+.++++|++|++++|.+....+ ..+
T Consensus 86 ~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~-------------~~~~l~~L~~L~L~~N~l~~~~~--------~~~ 144 (290)
T 1p9a_G 86 HNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG-------------ALRGLGELQELYLKGNELKTLPP--------GLL 144 (290)
T ss_dssp SSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSS-------------TTTTCTTCCEEECTTSCCCCCCT--------TTT
T ss_pred CCcCCcCchhhccCCCCCEEECCCCcCcccCHH-------------HHcCCCCCCEEECCCCCCCccCh--------hhc
Confidence 777777 67777777778888877777666522 24445555555555554321111 223
Q ss_pred cCCCCCcEEEEeeccCcccCccc--ccccccEEEE
Q 041360 382 KGLSKLTTLEIQVRDAQILPQDL--VLVELQRYKI 414 (561)
Q Consensus 382 ~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l 414 (561)
..+++|+.|+++.|.++.+|... .+++|+.|++
T Consensus 145 ~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L 179 (290)
T 1p9a_G 145 TPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLL 179 (290)
T ss_dssp TTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEEC
T ss_pred ccccCCCEEECCCCcCCccCHHHhcCcCCCCEEEC
Confidence 44455555555555555444432 3455555554
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.66 E-value=2.6e-16 Score=155.03 Aligned_cols=265 Identities=12% Similarity=0.086 Sum_probs=164.6
Q ss_pred ceEEEccCCCccccCCcc--CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeC
Q 041360 225 PIAISLPHRDIQELPERL--QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLG 302 (561)
Q Consensus 225 l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~ 302 (561)
+....++.+.+...+..+ .+++|+.|+++++. +..++...|+++++|++|++++|.+...++ +..+++|++|+++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP--LSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSC--CCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCc--cCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence 334444444444333322 45677777777776 555655555777777777777777766554 7777777777777
Q ss_pred CCCCCCcccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhc
Q 041360 303 GCRLKDIAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELK 382 (561)
Q Consensus 303 ~~~l~~p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~ 382 (561)
+|.++. +...++|++|++++|.+..++ ...+++|++|++++|......+ ..+.
T Consensus 89 ~n~l~~---l~~~~~L~~L~l~~n~l~~~~----------------~~~~~~L~~L~l~~N~l~~~~~--------~~~~ 141 (317)
T 3o53_A 89 NNYVQE---LLVGPSIETLHAANNNISRVS----------------CSRGQGKKNIYLANNKITMLRD--------LDEG 141 (317)
T ss_dssp SSEEEE---EEECTTCCEEECCSSCCSEEE----------------ECCCSSCEEEECCSSCCCSGGG--------BCTG
T ss_pred CCcccc---ccCCCCcCEEECCCCccCCcC----------------ccccCCCCEEECCCCCCCCccc--------hhhh
Confidence 777655 112367777777777665544 2245678888888876543222 3456
Q ss_pred CCCCCcEEEEeeccCcccCcc-c--ccccccEEEEEeccccccCCCCccccceEEEecCCccchhhhhhhHHHhhccccc
Q 041360 383 GLSKLTTLEIQVRDAQILPQD-L--VLVELQRYKICIGEAWRMWGVTSEISRLVRLHGLENVSTLLENYGMKMLLKEAEE 459 (561)
Q Consensus 383 ~l~~L~~L~l~~~~~~~~~~~-~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~ll~~L~~ 459 (561)
.+++|+.|+++.|.+..++.. . .+++|+.|++..+. +. .+ + +... +++|+.
T Consensus 142 ~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~------------~~-----------~-~~~~-l~~L~~ 195 (317)
T 3o53_A 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IY------------DV-----------K-GQVV-FAKLKT 195 (317)
T ss_dssp GGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CC------------EE-----------E-CCCC-CTTCCE
T ss_pred ccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Cc------------cc-----------c-cccc-cccCCE
Confidence 677888888888777654432 1 35677777663221 11 00 0 0001 388999
Q ss_pred eeeccccCcccccccccCCCCCCCccEEEEecCCccchhhcccCcccCCcCcccccccccccccc-ccCCCCCCCCCCCC
Q 041360 460 IHLNELKGVQNAVHELDDGEGFPRLKHLRVESCSEILHIVGSVGRVRRKVFPLLESLSLKKASFV-ILHGQKPTAASKGP 538 (561)
Q Consensus 460 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~c~~~-~~~~~~~~~~l~~L 538 (561)
|+++++ .+..++..+ ..+++|++|+++++ +++.+|. ....+++|+.|++.+++-. . ..+..+..+++|
T Consensus 196 L~Ls~N-~l~~l~~~~---~~l~~L~~L~L~~N-~l~~l~~-----~~~~l~~L~~L~l~~N~~~~~-~~~~~~~~~~~L 264 (317)
T 3o53_A 196 LDLSSN-KLAFMGPEF---QSAAGVTWISLRNN-KLVLIEK-----ALRFSQNLEHFDLRGNGFHCG-TLRDFFSKNQRV 264 (317)
T ss_dssp EECCSS-CCCEECGGG---GGGTTCSEEECTTS-CCCEECT-----TCCCCTTCCEEECTTCCCBHH-HHHHHHHTCHHH
T ss_pred EECCCC-cCCcchhhh---cccCcccEEECcCC-cccchhh-----HhhcCCCCCEEEccCCCccCc-CHHHHHhccccc
Confidence 999875 455565543 46899999999985 7777773 3367789999999988751 0 011114567788
Q ss_pred cccCCCcccccccccccC
Q 041360 539 EREKPTTSLGFNEIIAAD 556 (561)
Q Consensus 539 ~~L~i~~c~~l~~~~~~~ 556 (561)
+.+++.+|..+....+.+
T Consensus 265 ~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 265 QTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp HHHHHHHHHHHHSSSSCC
T ss_pred eEEECCCchhccCCchhc
Confidence 888887776666554443
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.64 E-value=2.1e-16 Score=164.85 Aligned_cols=234 Identities=12% Similarity=0.050 Sum_probs=152.5
Q ss_pred CceEEEccCCCccccCC-cc-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEe
Q 041360 224 GPIAISLPHRDIQELPE-RL-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCL 301 (561)
Q Consensus 224 ~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l 301 (561)
+++.|++++|.+..++. .+ .+++|++|++++|. +...++ |+.+++|++|++++|.+..+|.. ++|++|++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~----~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV--LYETLD--LESLSTLRTLDLNNNYVQELLVG----PSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC--CEEEEE--CTTCTTCCEEECCSSEEEEEEEC----TTCCEEEC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC--CCCCcc--cccCCCCCEEEecCCcCCCCCCC----CCcCEEEC
Confidence 67777777777766653 33 67777777777776 444443 47777777777777777665532 67777777
Q ss_pred CCCCCCC-cccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHh
Q 041360 302 GGCRLKD-IAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAE 380 (561)
Q Consensus 302 ~~~~l~~-p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 380 (561)
++|.+.. +. ..+++|++|++++|.+..++. ..++++++|+.|++++|.+....+ ..
T Consensus 107 ~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~-------------~~~~~l~~L~~L~Ls~N~l~~~~~--------~~ 163 (487)
T 3oja_A 107 ANNNISRVSC--SRGQGKKNIYLANNKITMLRD-------------LDEGCRSRVQYLDLKLNEIDTVNF--------AE 163 (487)
T ss_dssp CSSCCCCEEE--CCCSSCEEEECCSSCCCSGGG-------------BCGGGGSSEEEEECTTSCCCEEEG--------GG
T ss_pred cCCcCCCCCc--cccCCCCEEECCCCCCCCCCc-------------hhhcCCCCCCEEECCCCCCCCcCh--------HH
Confidence 7777766 33 235677777777776655431 225677888888888886643222 34
Q ss_pred hc-CCCCCcEEEEeeccCcccCcccccccccEEEEEeccccccCCCCccccceEEEecCCccchhhhhhhHHHhhccccc
Q 041360 381 LK-GLSKLTTLEIQVRDAQILPQDLVLVELQRYKICIGEAWRMWGVTSEISRLVRLHGLENVSTLLENYGMKMLLKEAEE 459 (561)
Q Consensus 381 l~-~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~ll~~L~~ 459 (561)
+. .+++|+.|+++.|.+..++....+++|+.|++..+. ....+..+..+ ++|+.
T Consensus 164 l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~------------------------l~~~~~~~~~l-~~L~~ 218 (487)
T 3oja_A 164 LAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNK------------------------LAFMGPEFQSA-AGVTW 218 (487)
T ss_dssp GGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSC------------------------CCEECGGGGGG-TTCSE
T ss_pred HhhhCCcccEEecCCCccccccccccCCCCCEEECCCCC------------------------CCCCCHhHcCC-CCccE
Confidence 43 678888888888888777666667777777764221 11122334444 89999
Q ss_pred eeeccccCcccccccccCCCCCCCccEEEEecCCcc-chhhcccCcccCCcCcccccccccccc
Q 041360 460 IHLNELKGVQNAVHELDDGEGFPRLKHLRVESCSEI-LHIVGSVGRVRRKVFPLLESLSLKKAS 522 (561)
Q Consensus 460 L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l-~~l~~~~~~~~~~~~~~L~~L~l~~c~ 522 (561)
|+++++ .+..+|.. ...+++|+.|++.+++-. ..+|. ....++.|+.|.+..+.
T Consensus 219 L~Ls~N-~l~~lp~~---l~~l~~L~~L~l~~N~l~c~~~~~-----~~~~l~~L~~l~~~~~~ 273 (487)
T 3oja_A 219 ISLRNN-KLVLIEKA---LRFSQNLEHFDLRGNGFHCGTLRD-----FFSKNQRVQTVAKQTVK 273 (487)
T ss_dssp EECTTS-CCCEECTT---CCCCTTCCEEECTTCCBCHHHHHH-----HHTTCHHHHHHHHHHHH
T ss_pred EEecCC-cCcccchh---hccCCCCCEEEcCCCCCcCcchHH-----HHHhCCCCcEEeccccc
Confidence 999984 45566654 457899999999986433 13432 23567778887776433
No 72
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.63 E-value=3.4e-15 Score=143.40 Aligned_cols=153 Identities=20% Similarity=0.284 Sum_probs=130.6
Q ss_pred CCceEEEccCCCccccCCcc--CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCch-hhcCCCCCcEE
Q 041360 223 KGPIAISLPHRDIQELPERL--QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPS-SLGRLFNLQTL 299 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~-~i~~L~~L~~L 299 (561)
.++++|++++|.+..++... .+++|++|+++++. +..++...|.++++|++|++++|.+..+|. .+..+++|++|
T Consensus 61 ~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 138 (270)
T 2o6q_A 61 TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK--LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYL 138 (270)
T ss_dssp TTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC--CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc--CCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEE
Confidence 68999999999999888765 69999999999997 778888878999999999999999999865 57899999999
Q ss_pred EeCCCCCCC-c-ccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccc
Q 041360 300 CLGGCRLKD-I-AIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNAS 377 (561)
Q Consensus 300 ~l~~~~l~~-p-~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 377 (561)
++++|.+.. | ..++.+++|++|++++|.+..+|. ..+.++++|++|++++|.......
T Consensus 139 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-------------~~~~~l~~L~~L~L~~N~l~~~~~------- 198 (270)
T 2o6q_A 139 SLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE-------------GAFDKLTELKTLKLDNNQLKRVPE------- 198 (270)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT-------------TTTTTCTTCCEEECCSSCCSCCCT-------
T ss_pred ECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh-------------hHhccCCCcCEEECCCCcCCcCCH-------
Confidence 999999988 5 558999999999999998876653 236788999999999987642222
Q ss_pred hHhhcCCCCCcEEEEeeccCc
Q 041360 378 LAELKGLSKLTTLEIQVRDAQ 398 (561)
Q Consensus 378 ~~~l~~l~~L~~L~l~~~~~~ 398 (561)
..+..+++|+.|+++.|...
T Consensus 199 -~~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 199 -GAFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp -TTTTTCTTCCEEECCSSCBC
T ss_pred -HHhccccCCCEEEecCCCee
Confidence 34678899999999988654
No 73
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.63 E-value=1.6e-16 Score=156.22 Aligned_cols=83 Identities=20% Similarity=0.274 Sum_probs=42.2
Q ss_pred CCCCccEEEecCCCCCC-Cchhh--cCCCCCcEEEeCCCCCCC-cccccCC-----CCCcEEEccCCcCcccChhhhccc
Q 041360 269 GTEEVKVLSLTGVRFSS-LPSSL--GRLFNLQTLCLGGCRLKD-IAIVGQL-----KKLEILSFRDSYIEELPHEIGQLT 339 (561)
Q Consensus 269 ~l~~Lr~L~l~~~~i~~-lp~~i--~~L~~L~~L~l~~~~l~~-p~~i~~L-----~~L~~L~l~~~~~~~lp~~i~~L~ 339 (561)
++++|++|++++|.+.. +|..+ +.+++|++|++++|.+.. |..++.+ ++|++|++++|.+..+|.
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~------ 166 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSC------ 166 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCT------
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchH------
Confidence 45555555555555542 44443 555555555555555544 4444444 555555555555443321
Q ss_pred cccccCchhhcCCCCCcEEEccCCc
Q 041360 340 RLVVIAPNLISKFSQLEELYMGDSF 364 (561)
Q Consensus 340 ~L~~l~~~~i~~l~~L~~L~l~~~~ 364 (561)
..++++++|++|++++|.
T Consensus 167 -------~~~~~l~~L~~L~Ls~N~ 184 (312)
T 1wwl_A 167 -------EQVRVFPALSTLDLSDNP 184 (312)
T ss_dssp -------TTCCCCSSCCEEECCSCT
T ss_pred -------HHhccCCCCCEEECCCCC
Confidence 124455555555555554
No 74
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.63 E-value=3.5e-15 Score=141.65 Aligned_cols=169 Identities=21% Similarity=0.328 Sum_probs=137.7
Q ss_pred CCceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCch-hhcCCCCCcEEEe
Q 041360 223 KGPIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPS-SLGRLFNLQTLCL 301 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~-~i~~L~~L~~L~l 301 (561)
+..++++++++.+..+|..+. ++++.|+++++. +..++...|+++++|++|++++|.+..++. .+..+.+|++|++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP-ADTEKLDLQSTG--LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC-TTCCEEECTTSC--CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCccccCCCCC-CCCCEEEccCCC--cCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 345678899999998887664 689999999997 667776667999999999999999998754 5889999999999
Q ss_pred CCCCCCC-c-ccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchH
Q 041360 302 GGCRLKD-I-AIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLA 379 (561)
Q Consensus 302 ~~~~l~~-p-~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 379 (561)
++|.++. + ..+..+++|++|++++|.+..+|.. .++++++|++|++++|.+....+ .
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-------------~~~~l~~L~~L~Ls~N~l~~~~~--------~ 149 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSG-------------VFDRLTKLKELRLNTNQLQSIPA--------G 149 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-------------TTTTCTTCCEEECCSSCCCCCCT--------T
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChh-------------HhccCCcccEEECcCCcCCccCH--------H
Confidence 9999888 4 6789999999999999988766643 36788999999999987642222 3
Q ss_pred hhcCCCCCcEEEEeeccCcccCcc--cccccccEEEEE
Q 041360 380 ELKGLSKLTTLEIQVRDAQILPQD--LVLVELQRYKIC 415 (561)
Q Consensus 380 ~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~ 415 (561)
.+..+++|+.|+++.|.+..++.. ..+++|+.|++.
T Consensus 150 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 187 (251)
T 3m19_A 150 AFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLF 187 (251)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred HcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEee
Confidence 577889999999999998877753 267888888874
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.62 E-value=4.2e-15 Score=143.27 Aligned_cols=148 Identities=18% Similarity=0.215 Sum_probs=88.6
Q ss_pred cCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCch-hhcCCCCCcEEEeCCCCCCC-
Q 041360 231 PHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPS-SLGRLFNLQTLCLGGCRLKD- 308 (561)
Q Consensus 231 ~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~- 308 (561)
.+..+..+|..+ .++|++|+++++. +..++...|.++++|++|++++|.+..++. .+..+++|++|++++|.+..
T Consensus 15 ~~~~l~~ip~~l-~~~l~~L~ls~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 91 (276)
T 2z62_A 15 MELNFYKIPDNL-PFSTKNLDLSFNP--LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL 91 (276)
T ss_dssp TTSCCSSCCSSS-CTTCCEEECTTCC--CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred cCCCccccCCCC-CCCccEEECCCCc--ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc
Confidence 334444555433 2456777776665 555555445667777777777777666543 56667777777777777666
Q ss_pred -cccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhcCCCCC
Q 041360 309 -IAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLSKL 387 (561)
Q Consensus 309 -p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L 387 (561)
+..+.++++|++|++++|.+..++. ..++++++|++|++++|..... .....+.++++|
T Consensus 92 ~~~~~~~l~~L~~L~l~~n~l~~~~~-------------~~~~~l~~L~~L~l~~n~l~~~-------~l~~~~~~l~~L 151 (276)
T 2z62_A 92 ALGAFSGLSSLQKLVAVETNLASLEN-------------FPIGHLKTLKELNVAHNLIQSF-------KLPEYFSNLTNL 151 (276)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCCSTT-------------CCCTTCTTCCEEECCSSCCCCC-------CCCGGGGGCTTC
T ss_pred ChhhhcCCccccEEECCCCCccccCc-------------hhcccCCCCCEEECcCCcccee-------cCchhhccCCCC
Confidence 3566677777777777666554432 1255666677777766654321 112455666677
Q ss_pred cEEEEeeccCcccC
Q 041360 388 TTLEIQVRDAQILP 401 (561)
Q Consensus 388 ~~L~l~~~~~~~~~ 401 (561)
+.|+++.|.++.++
T Consensus 152 ~~L~Ls~N~l~~~~ 165 (276)
T 2z62_A 152 EHLDLSSNKIQSIY 165 (276)
T ss_dssp CEEECCSSCCCEEC
T ss_pred CEEECCCCCCCcCC
Confidence 77777766665544
No 76
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.62 E-value=7.1e-15 Score=141.32 Aligned_cols=168 Identities=23% Similarity=0.284 Sum_probs=138.3
Q ss_pred CCceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchh-hcCCCCCcEEEe
Q 041360 223 KGPIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSS-LGRLFNLQTLCL 301 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~-i~~L~~L~~L~l 301 (561)
++++.+.+.++.+..++....+++|++|+++++. +..++. ++++++|++|++++|.++.+|.. ++.+++|++|++
T Consensus 41 ~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~--l~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 116 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNK--LHDISA--LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116 (272)
T ss_dssp TTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSC--CCCCGG--GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cceeeeeeCCCCcccccccccCCCCcEEECCCCC--CCCchh--hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence 6799999999999888766689999999999997 556653 58999999999999999998654 689999999999
Q ss_pred CCCCCCC-c-ccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchH
Q 041360 302 GGCRLKD-I-AIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLA 379 (561)
Q Consensus 302 ~~~~l~~-p-~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 379 (561)
++|.+.. + ..++.+++|++|++++|.+..+|.. .++++++|++|++++|......+ .
T Consensus 117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------------~~~~l~~L~~L~l~~n~l~~~~~--------~ 175 (272)
T 3rfs_A 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKG-------------VFDKLTNLTELDLSYNQLQSLPE--------G 175 (272)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-------------TTTTCTTCCEEECCSSCCCCCCT--------T
T ss_pred CCCcCCccCHHHhccCCCCCEEECCCCccCccCHH-------------HhccCccCCEEECCCCCcCccCH--------H
Confidence 9999888 4 5589999999999999988766542 36788999999999987642222 3
Q ss_pred hhcCCCCCcEEEEeeccCcccCcc--cccccccEEEEE
Q 041360 380 ELKGLSKLTTLEIQVRDAQILPQD--LVLVELQRYKIC 415 (561)
Q Consensus 380 ~l~~l~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~ 415 (561)
.+..+++|+.|+++.|.+..++.. ..+++|+.|++.
T Consensus 176 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 213 (272)
T 3rfs_A 176 VFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLH 213 (272)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECC
T ss_pred HhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEcc
Confidence 467889999999999998877764 367888888874
No 77
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.62 E-value=2.6e-15 Score=144.78 Aligned_cols=173 Identities=21% Similarity=0.278 Sum_probs=134.1
Q ss_pred CCceEEEccCCCccccCC-cc-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCc-hhhcCCCCCcEE
Q 041360 223 KGPIAISLPHRDIQELPE-RL-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLP-SSLGRLFNLQTL 299 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~L~~L~~L 299 (561)
.+++++++++|.+..++. .+ .+++|++|+++++. +..++...|+++++|++|++++|.+..++ ..+..+.+|++|
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE--IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC--CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCc--CCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEE
Confidence 689999999999988876 33 78999999999997 77777766799999999999999999875 679999999999
Q ss_pred EeCCCCCCC-c-ccccCCCCCcEEEccCCcCcc--cChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcc
Q 041360 300 CLGGCRLKD-I-AIVGQLKKLEILSFRDSYIEE--LPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSN 375 (561)
Q Consensus 300 ~l~~~~l~~-p-~~i~~L~~L~~L~l~~~~~~~--lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~ 375 (561)
++++|.+.. + ..++.+++|++|++++|.+.. +|.. ++++++|++|++++|.......
T Consensus 106 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~--------------~~~l~~L~~L~Ls~N~l~~~~~----- 166 (276)
T 2z62_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY--------------FSNLTNLEHLDLSSNKIQSIYC----- 166 (276)
T ss_dssp ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG--------------GGGCTTCCEEECCSSCCCEECG-----
T ss_pred ECCCCCccccCchhcccCCCCCEEECcCCccceecCchh--------------hccCCCCCEEECCCCCCCcCCH-----
Confidence 999999888 4 579999999999999998876 3433 5677778888888776542222
Q ss_pred cchHhhcCCCCCc-EEEEeeccCcccCccc-ccccccEEEEEe
Q 041360 376 ASLAELKGLSKLT-TLEIQVRDAQILPQDL-VLVELQRYKICI 416 (561)
Q Consensus 376 ~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~-~~~~L~~L~l~~ 416 (561)
..+..+..++.|. .|+++.|.+..++... ...+|+.|++..
T Consensus 167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~ 209 (276)
T 2z62_A 167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDT 209 (276)
T ss_dssp GGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCS
T ss_pred HHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCC
Confidence 2334455555555 6777777777665443 444677777743
No 78
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.61 E-value=1.5e-14 Score=140.44 Aligned_cols=165 Identities=22% Similarity=0.237 Sum_probs=139.4
Q ss_pred CCceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeC
Q 041360 223 KGPIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLG 302 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~ 302 (561)
.+++.+++++|.+..++....+++|++|+++++. +..++. ++++++|++|++++|.+..+|. +..+++|++|+++
T Consensus 46 ~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~--l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK--LTDIKP--LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLE 120 (291)
T ss_dssp HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSC--CCCCGG--GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECT
T ss_pred CcccEEEccCCCcccChhHhcCCCCCEEEccCCc--cCCCcc--cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECC
Confidence 5789999999999888765589999999999997 677776 5899999999999999988765 9999999999999
Q ss_pred CCCCCCcccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhc
Q 041360 303 GCRLKDIAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELK 382 (561)
Q Consensus 303 ~~~l~~p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~ 382 (561)
+|.+..++.+..+++|++|++++|.+..++ .++++++|++|++++|.... . ..+.
T Consensus 121 ~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~---------------~l~~l~~L~~L~L~~N~l~~-~---------~~l~ 175 (291)
T 1h6t_A 121 HNGISDINGLVHLPQLESLYLGNNKITDIT---------------VLSRLTKLDTLSLEDNQISD-I---------VPLA 175 (291)
T ss_dssp TSCCCCCGGGGGCTTCCEEECCSSCCCCCG---------------GGGGCTTCSEEECCSSCCCC-C---------GGGT
T ss_pred CCcCCCChhhcCCCCCCEEEccCCcCCcch---------------hhccCCCCCEEEccCCcccc-c---------hhhc
Confidence 999988777899999999999999877652 26788889999999886531 1 1277
Q ss_pred CCCCCcEEEEeeccCcccCcccccccccEEEEEec
Q 041360 383 GLSKLTTLEIQVRDAQILPQDLVLVELQRYKICIG 417 (561)
Q Consensus 383 ~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 417 (561)
.+++|+.|+++.|.++.++....+++|+.|++...
T Consensus 176 ~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n 210 (291)
T 1h6t_A 176 GLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQ 210 (291)
T ss_dssp TCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEE
T ss_pred CCCccCEEECCCCcCCCChhhccCCCCCEEECcCC
Confidence 88999999999999888877668889999988644
No 79
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.61 E-value=3.5e-15 Score=140.57 Aligned_cols=140 Identities=17% Similarity=0.217 Sum_probs=91.5
Q ss_pred ccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCC-CCCCch-hhcCCCCCcEEEeCC-CCCCC-c-
Q 041360 235 IQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVR-FSSLPS-SLGRLFNLQTLCLGG-CRLKD-I- 309 (561)
Q Consensus 235 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-i~~lp~-~i~~L~~L~~L~l~~-~~l~~-p- 309 (561)
+..+|. -.++|+.|+++++. +..++...|+++++|++|++++|. ++.+|+ .+..+++|++|++++ |.++. +
T Consensus 23 l~~ip~--~~~~l~~L~l~~n~--l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~ 98 (239)
T 2xwt_C 23 IQRIPS--LPPSTQTLKLIETH--LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP 98 (239)
T ss_dssp CSSCCC--CCTTCCEEEEESCC--CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT
T ss_pred ccccCC--CCCcccEEEEeCCc--ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH
Confidence 555665 23478888888876 667776556788888888888886 777754 677788888888887 66776 3
Q ss_pred ccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCc---EEEccCC-cccccccCCCcccchHhhcCCC
Q 041360 310 AIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLE---ELYMGDS-FSQWDKVEGGSNASLAELKGLS 385 (561)
Q Consensus 310 ~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~~~l~~l~ 385 (561)
..+..+++|++|++++|.+..+|. ++.+++|+ +|++++| ... ..+ ...+.+++
T Consensus 99 ~~f~~l~~L~~L~l~~n~l~~lp~---------------~~~l~~L~~L~~L~l~~N~~l~-~i~-------~~~~~~l~ 155 (239)
T 2xwt_C 99 DALKELPLLKFLGIFNTGLKMFPD---------------LTKVYSTDIFFILEITDNPYMT-SIP-------VNAFQGLC 155 (239)
T ss_dssp TSEECCTTCCEEEEEEECCCSCCC---------------CTTCCBCCSEEEEEEESCTTCC-EEC-------TTTTTTTB
T ss_pred HHhCCCCCCCEEeCCCCCCccccc---------------cccccccccccEEECCCCcchh-hcC-------cccccchh
Confidence 567778888888888877766653 23333443 7777766 332 111 12355566
Q ss_pred CCc-EEEEeeccCcccC
Q 041360 386 KLT-TLEIQVRDAQILP 401 (561)
Q Consensus 386 ~L~-~L~l~~~~~~~~~ 401 (561)
+|+ .|+++.|.++.+|
T Consensus 156 ~L~~~L~l~~n~l~~i~ 172 (239)
T 2xwt_C 156 NETLTLKLYNNGFTSVQ 172 (239)
T ss_dssp SSEEEEECCSCCCCEEC
T ss_pred cceeEEEcCCCCCcccC
Confidence 666 6666666554333
No 80
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.59 E-value=1.4e-16 Score=165.72 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=18.6
Q ss_pred CCCccEEEEecCCccc-----hhhcccCcccCCcCccccccccccccc
Q 041360 481 FPRLKHLRVESCSEIL-----HIVGSVGRVRRKVFPLLESLSLKKASF 523 (561)
Q Consensus 481 ~~~L~~L~l~~c~~l~-----~l~~~~~~~~~~~~~~L~~L~l~~c~~ 523 (561)
.++|++|++++| +++ .++. ....+++|++|++.+|+-
T Consensus 369 ~~~L~~L~L~~n-~i~~~~~~~l~~-----~l~~~~~L~~L~l~~N~i 410 (461)
T 1z7x_W 369 GSVLRVLWLADC-DVSDSSCSSLAA-----TLLANHSLRELDLSNNCL 410 (461)
T ss_dssp TCCCCEEECTTS-CCCHHHHHHHHH-----HHHHCCCCCEEECCSSSC
T ss_pred CCceEEEECCCC-CCChhhHHHHHH-----HHHhCCCccEEECCCCCC
Confidence 456666666664 333 2331 123356666666666553
No 81
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.59 E-value=4.8e-15 Score=139.62 Aligned_cols=168 Identities=14% Similarity=0.192 Sum_probs=121.9
Q ss_pred CCceEEEccCCCccccCCc-c-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecC-CCCCCCc-hhhcCCCCCcE
Q 041360 223 KGPIAISLPHRDIQELPER-L-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTG-VRFSSLP-SSLGRLFNLQT 298 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~-~~i~~lp-~~i~~L~~L~~ 298 (561)
.+++.+++++|.+..++.. + .+++|++|+++++. .+..++...|+++++|++|++++ |.++.+| ..+..+++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV-TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCS-SCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCC-CcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCE
Confidence 6899999999999988874 3 79999999999995 37778876679999999999998 8999986 46889999999
Q ss_pred EEeCCCCCCC-cccccCCCCCc---EEEccCC-cCcccChhhhccccccccCchhhcCCCCCc-EEEccCCcccccccCC
Q 041360 299 LCLGGCRLKD-IAIVGQLKKLE---ILSFRDS-YIEELPHEIGQLTRLVVIAPNLISKFSQLE-ELYMGDSFSQWDKVEG 372 (561)
Q Consensus 299 L~l~~~~l~~-p~~i~~L~~L~---~L~l~~~-~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~-~L~l~~~~~~~~~~~~ 372 (561)
|++++|.++. |. ++.+.+|+ +|++++| .+..+|.. .+.++++|+ +|++++|... ..+.
T Consensus 110 L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~-------------~~~~l~~L~~~L~l~~n~l~-~i~~- 173 (239)
T 2xwt_C 110 LGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVN-------------AFQGLCNETLTLKLYNNGFT-SVQG- 173 (239)
T ss_dssp EEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTT-------------TTTTTBSSEEEEECCSCCCC-EECT-
T ss_pred EeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcc-------------cccchhcceeEEEcCCCCCc-ccCH-
Confidence 9999999888 55 88888888 9999999 88777643 245555566 6666555443 1110
Q ss_pred CcccchHhhcCCCCCcEEEEeecc-CcccCccc--cc-ccccEEEE
Q 041360 373 GSNASLAELKGLSKLTTLEIQVRD-AQILPQDL--VL-VELQRYKI 414 (561)
Q Consensus 373 ~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~--~~-~~L~~L~l 414 (561)
..+.. ++|+.|+++.|. ++.++... .+ ++|+.|++
T Consensus 174 ------~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l 212 (239)
T 2xwt_C 174 ------YAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV 212 (239)
T ss_dssp ------TTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEEC
T ss_pred ------hhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEEC
Confidence 11222 456666666552 55444332 34 55666555
No 82
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.58 E-value=5e-15 Score=147.91 Aligned_cols=165 Identities=15% Similarity=0.101 Sum_probs=104.7
Q ss_pred EEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCC-Cch-hhcCCCCCcE-EEeCC
Q 041360 227 AISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSS-LPS-SLGRLFNLQT-LCLGG 303 (561)
Q Consensus 227 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~-lp~-~i~~L~~L~~-L~l~~ 303 (561)
.+..+++++..+|..+ .++++.|+++++. +..+|...|+++++|++|+|++|.+.+ +|. .+.++++|+. +.+.+
T Consensus 13 ~v~C~~~~Lt~iP~~l-~~~l~~L~Ls~N~--i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVTEIPSDL-PRNAIELRFVLTK--LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCCSCCTTC-CTTCSEEEEESCC--CSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCCccCcCc-CCCCCEEEccCCc--CCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 4556667777777755 4678888888887 778887777888888888888888755 553 5677887765 55556
Q ss_pred CCCCC--cccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhh
Q 041360 304 CRLKD--IAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAEL 381 (561)
Q Consensus 304 ~~l~~--p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 381 (561)
+++.. |..+..+++|++|++++|.+..+|.. .+....++..|++.++......+. ..+
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~-------------~~~~~~~l~~l~l~~~~~i~~l~~-------~~f 149 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV-------------HKIHSLQKVLLDIQDNINIHTIER-------NSF 149 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCC-------------TTCCBSSCEEEEEESCTTCCEECT-------TSS
T ss_pred CcccccCchhhhhccccccccccccccccCCch-------------hhcccchhhhhhhccccccccccc-------cch
Confidence 67777 46788888888888888887766532 123334455555544332222221 122
Q ss_pred cCC-CCCcEEEEeeccCcccCccc-ccccccEEEE
Q 041360 382 KGL-SKLTTLEIQVRDAQILPQDL-VLVELQRYKI 414 (561)
Q Consensus 382 ~~l-~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l 414 (561)
..+ ..++.|+++.|.++.++... ...+|+.+.+
T Consensus 150 ~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l 184 (350)
T 4ay9_X 150 VGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNL 184 (350)
T ss_dssp TTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEEC
T ss_pred hhcchhhhhhccccccccCCChhhccccchhHHhh
Confidence 222 24666677766666555442 3344555544
No 83
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.56 E-value=1.5e-14 Score=141.92 Aligned_cols=171 Identities=18% Similarity=0.211 Sum_probs=96.0
Q ss_pred CCceEEEccCCCcc-ccCCcc---CCCCccEEEeeccCCCCccccHHHHcCC-----CCccEEEecCCCCCCCc-hhhcC
Q 041360 223 KGPIAISLPHRDIQ-ELPERL---QCPNLELFLLFRKGYGSMQISDLFFEGT-----EEVKVLSLTGVRFSSLP-SSLGR 292 (561)
Q Consensus 223 ~~l~~l~l~~~~~~-~l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~l-----~~Lr~L~l~~~~i~~lp-~~i~~ 292 (561)
.+++++++++|.+. .+|..+ .+++|++|+++++. +..+|..+ +.+ ++|++|++++|.+..+| ..++.
T Consensus 95 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~-~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 95 SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS--WATRDAWL-AELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp SCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB--CSSSSSHH-HHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred CCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC--CcchhHHH-HHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 45666666666664 345432 46666666666665 44444332 444 66666666666666654 56666
Q ss_pred CCCCcEEEeCCCCCCC----cccc--cCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCccc
Q 041360 293 LFNLQTLCLGGCRLKD----IAIV--GQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQ 366 (561)
Q Consensus 293 L~~L~~L~l~~~~l~~----p~~i--~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~ 366 (561)
+++|++|++++|.+.. |..+ +.+++|++|++++|.+..+|. ++...+.++++|++|++++|...
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----------~~~~~~~~l~~L~~L~Ls~N~l~ 241 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSG----------VCSALAAARVQLQGLDLSHNSLR 241 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH----------HHHHHHHTTCCCSEEECTTSCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHH----------HHHHHHhcCCCCCEEECCCCcCC
Confidence 6666666666666432 2333 566666666666666554332 11122456666667776666543
Q ss_pred ccccCCCcccchHhhcCCCCCcEEEEeeccCcccCcccccccccEEEE
Q 041360 367 WDKVEGGSNASLAELKGLSKLTTLEIQVRDAQILPQDLVLVELQRYKI 414 (561)
Q Consensus 367 ~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 414 (561)
...+ ...+..+++|+.|+++.|.++.+|.... ++|+.|++
T Consensus 242 ~~~~-------~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~~L~~L~L 281 (312)
T 1wwl_A 242 DAAG-------APSCDWPSQLNSLNLSFTGLKQVPKGLP-AKLSVLDL 281 (312)
T ss_dssp SSCC-------CSCCCCCTTCCEEECTTSCCSSCCSSCC-SEEEEEEC
T ss_pred cccc-------hhhhhhcCCCCEEECCCCccChhhhhcc-CCceEEEC
Confidence 2221 1223445666677776666666655444 55665555
No 84
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.56 E-value=3.6e-14 Score=134.63 Aligned_cols=154 Identities=21% Similarity=0.302 Sum_probs=131.0
Q ss_pred CCceEEEccCCCccccCCc-c-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCch-hhcCCCCCcEE
Q 041360 223 KGPIAISLPHRDIQELPER-L-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPS-SLGRLFNLQTL 299 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~-~i~~L~~L~~L 299 (561)
..++.+++++|.+..++.. + .+++|++|+++++. +..++...|.++++|++|++++|.+..+|. .+..+++|++|
T Consensus 35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 112 (251)
T 3m19_A 35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ--LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL 112 (251)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC--CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc--CCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEE
Confidence 7899999999999887764 3 78999999999997 777777767999999999999999999864 57899999999
Q ss_pred EeCCCCCCC-c-ccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccc
Q 041360 300 CLGGCRLKD-I-AIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNAS 377 (561)
Q Consensus 300 ~l~~~~l~~-p-~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 377 (561)
++++|.++. + ..+..+++|++|++++|.+..+|. ..++++++|++|++++|......+
T Consensus 113 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------------~~~~~l~~L~~L~L~~N~l~~~~~------- 172 (251)
T 3m19_A 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPA-------------GAFDKLTNLQTLSLSTNQLQSVPH------- 172 (251)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------------TTTTTCTTCCEEECCSSCCSCCCT-------
T ss_pred EcCCCcCCCcChhHhccCCcccEEECcCCcCCccCH-------------HHcCcCcCCCEEECCCCcCCccCH-------
Confidence 999999988 5 557999999999999998877663 237789999999999997653222
Q ss_pred hHhhcCCCCCcEEEEeeccCcc
Q 041360 378 LAELKGLSKLTTLEIQVRDAQI 399 (561)
Q Consensus 378 ~~~l~~l~~L~~L~l~~~~~~~ 399 (561)
..+..+++|+.|+++.|.+..
T Consensus 173 -~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 173 -GAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp -TTTTTCTTCCEEECCSCCBCT
T ss_pred -HHHhCCCCCCEEEeeCCceeC
Confidence 457788999999999988753
No 85
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.56 E-value=4e-15 Score=155.18 Aligned_cols=207 Identities=12% Similarity=0.017 Sum_probs=151.6
Q ss_pred CCceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeC
Q 041360 223 KGPIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLG 302 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~ 302 (561)
.+++.|++++|.+...++...+++|++|++++|. +..+|. .++|++|++++|.+..+|.. .+++|++|+++
T Consensus 58 ~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~--l~~l~~-----~~~L~~L~L~~N~l~~~~~~--~l~~L~~L~L~ 128 (487)
T 3oja_A 58 TKLELLNLSSNVLYETLDLESLSTLRTLDLNNNY--VQELLV-----GPSIETLHAANNNISRVSCS--RGQGKKNIYLA 128 (487)
T ss_dssp TTCCEEECTTSCCEEEEECTTCTTCCEEECCSSE--EEEEEE-----CTTCCEEECCSSCCCCEEEC--CCSSCEEEECC
T ss_pred CCCCEEEeeCCCCCCCcccccCCCCCEEEecCCc--CCCCCC-----CCCcCEEECcCCcCCCCCcc--ccCCCCEEECC
Confidence 6899999999999776664489999999999997 666653 38999999999999998763 57899999999
Q ss_pred CCCCCC--cccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHh
Q 041360 303 GCRLKD--IAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAE 380 (561)
Q Consensus 303 ~~~l~~--p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 380 (561)
+|.+.. |..++.+++|++|++++|.+...+ |....+.+++|++|++++|.+... ..
T Consensus 129 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------------~~~l~~~l~~L~~L~Ls~N~l~~~----------~~ 186 (487)
T 3oja_A 129 NNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN------------FAELAASSDTLEHLNLQYNFIYDV----------KG 186 (487)
T ss_dssp SSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE------------GGGGGGGTTTCCEEECTTSCCCEE----------EC
T ss_pred CCCCCCCCchhhcCCCCCCEEECCCCCCCCcC------------hHHHhhhCCcccEEecCCCccccc----------cc
Confidence 999988 578999999999999999887643 122134789999999999976432 22
Q ss_pred hcCCCCCcEEEEeeccCcccCccc-ccccccEEEEEecc--ccccCCCCccccceEEEecCCccch-hhhhhhHHHhhcc
Q 041360 381 LKGLSKLTTLEIQVRDAQILPQDL-VLVELQRYKICIGE--AWRMWGVTSEISRLVRLHGLENVST-LLENYGMKMLLKE 456 (561)
Q Consensus 381 l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~--~~~~~~~~~~~~~l~~L~~~~~~~~-~~~~~~~~~ll~~ 456 (561)
...+++|+.|+++.|.++.+|..+ .+++|+.|++..+. .+|.+.... .++..|++.+|... ...+.++..+ +.
T Consensus 187 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l--~~L~~L~l~~N~l~c~~~~~~~~~l-~~ 263 (487)
T 3oja_A 187 QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFS--QNLEHFDLRGNGFHCGTLRDFFSKN-QR 263 (487)
T ss_dssp CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCC--TTCCEEECTTCCBCHHHHHHHHTTC-HH
T ss_pred cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccC--CCCCEEEcCCCCCcCcchHHHHHhC-CC
Confidence 346899999999999998887654 78899999985432 233333322 33445555443311 2334444443 55
Q ss_pred ccceeec
Q 041360 457 AEEIHLN 463 (561)
Q Consensus 457 L~~L~l~ 463 (561)
|+.|.+.
T Consensus 264 L~~l~~~ 270 (487)
T 3oja_A 264 VQTVAKQ 270 (487)
T ss_dssp HHHHHHH
T ss_pred CcEEecc
Confidence 6666554
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.55 E-value=4e-14 Score=136.01 Aligned_cols=164 Identities=17% Similarity=0.226 Sum_probs=135.0
Q ss_pred CCceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchh-hcCCCCCcEEEe
Q 041360 223 KGPIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSS-LGRLFNLQTLCL 301 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~-i~~L~~L~~L~l 301 (561)
++++++++++|.+..++....+++|++|+++++. +..++...|+++++|++|++++|.+..+|.. ++.+++|++|++
T Consensus 63 ~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 140 (272)
T 3rfs_A 63 PNVRYLALGGNKLHDISALKELTNLTYLILTGNQ--LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140 (272)
T ss_dssp TTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSC--CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEECCCCCCCCchhhcCCCCCCEEECCCCc--cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence 6899999999999887755589999999999997 7788887779999999999999999998664 789999999999
Q ss_pred CCCCCCC-c-ccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchH
Q 041360 302 GGCRLKD-I-AIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLA 379 (561)
Q Consensus 302 ~~~~l~~-p-~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 379 (561)
++|.+.. + ..++.+++|++|++++|.+..+|.. .++.+++|++|++++|......+ .
T Consensus 141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-------------~~~~l~~L~~L~L~~N~l~~~~~--------~ 199 (272)
T 3rfs_A 141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG-------------VFDKLTQLKDLRLYQNQLKSVPD--------G 199 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-------------TTTTCTTCCEEECCSSCCSCCCT--------T
T ss_pred CCCccCccCHHHhccCccCCEEECCCCCcCccCHH-------------HhcCCccCCEEECCCCcCCccCH--------H
Confidence 9999988 5 5579999999999999988766532 36788999999999987653222 4
Q ss_pred hhcCCCCCcEEEEeeccCcccCcccccccccEEEE
Q 041360 380 ELKGLSKLTTLEIQVRDAQILPQDLVLVELQRYKI 414 (561)
Q Consensus 380 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 414 (561)
.+..+++|+.|+++.|.... .+++|+.|.+
T Consensus 200 ~~~~l~~L~~L~l~~N~~~~-----~~~~l~~l~~ 229 (272)
T 3rfs_A 200 VFDRLTSLQYIWLHDNPWDC-----TCPGIRYLSE 229 (272)
T ss_dssp TTTTCTTCCEEECCSSCBCC-----CTTTTHHHHH
T ss_pred HHhCCcCCCEEEccCCCccc-----cCcHHHHHHH
Confidence 57889999999999886542 3444554443
No 87
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.54 E-value=5.1e-14 Score=136.49 Aligned_cols=168 Identities=20% Similarity=0.168 Sum_probs=143.6
Q ss_pred CCceEEEccCCCccccCCc-c-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEE
Q 041360 223 KGPIAISLPHRDIQELPER-L-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLC 300 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~ 300 (561)
..++.|++++|.+..++.. + .+++|+.|+++++. +..++.. +.+++|++|++++|.+..+|..+..+++|++|+
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~--~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~ 106 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE--LTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLD 106 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC--CCEEECC--SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEE
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc--cCcccCC--CCCCcCCEEECCCCcCCcCchhhccCCCCCEEE
Confidence 7899999999999877643 3 89999999999997 7677663 789999999999999999999999999999999
Q ss_pred eCCCCCCC-c-ccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccch
Q 041360 301 LGGCRLKD-I-AIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASL 378 (561)
Q Consensus 301 l~~~~l~~-p-~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 378 (561)
+++|.++. | ..+..+++|++|++++|.+..+|.+ .+.++++|+.|++++|.+.....
T Consensus 107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~-------------~~~~l~~L~~L~L~~N~l~~l~~-------- 165 (290)
T 1p9a_G 107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPG-------------LLTPTPKLEKLSLANNNLTELPA-------- 165 (290)
T ss_dssp CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTT-------------TTTTCTTCCEEECTTSCCSCCCT--------
T ss_pred CCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChh-------------hcccccCCCEEECCCCcCCccCH--------
Confidence 99999988 4 7799999999999999988877643 36789999999999997652222
Q ss_pred HhhcCCCCCcEEEEeeccCcccCccc-ccccccEEEEE
Q 041360 379 AELKGLSKLTTLEIQVRDAQILPQDL-VLVELQRYKIC 415 (561)
Q Consensus 379 ~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~ 415 (561)
..+.++++|+.|+++.|.+..+|... ...+|+.+.+.
T Consensus 166 ~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~ 203 (290)
T 1p9a_G 166 GLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLH 203 (290)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECC
T ss_pred HHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeC
Confidence 34678899999999999999888765 56789988874
No 88
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.53 E-value=4.8e-14 Score=150.10 Aligned_cols=163 Identities=22% Similarity=0.248 Sum_probs=128.6
Q ss_pred CCceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeC
Q 041360 223 KGPIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLG 302 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~ 302 (561)
.+++.|+++++.+..++....+++|+.|++++|. +..++. +..+++|++|+|++|.+..+| .+..+++|++|+|+
T Consensus 43 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~--l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 43 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK--LTDIKP--LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLE 117 (605)
T ss_dssp TTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSC--CCCCGG--GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECT
T ss_pred CCCCEEECcCCCCCCChHHccCCCCCEEEeeCCC--CCCChh--hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEec
Confidence 6788899999999888765588999999999987 667776 589999999999999998876 68999999999999
Q ss_pred CCCCCCcccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhc
Q 041360 303 GCRLKDIAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELK 382 (561)
Q Consensus 303 ~~~l~~p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~ 382 (561)
+|.+..++.+..+++|+.|++++|.+..++ .++.+++|+.|++++|.+.. . ..+.
T Consensus 118 ~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~---------------~l~~l~~L~~L~Ls~N~l~~---------~-~~l~ 172 (605)
T 1m9s_A 118 HNGISDINGLVHLPQLESLYLGNNKITDIT---------------VLSRLTKLDTLSLEDNQISD---------I-VPLA 172 (605)
T ss_dssp TSCCCCCGGGGGCTTCSEEECCSSCCCCCG---------------GGGSCTTCSEEECCSSCCCC---------C-GGGT
T ss_pred CCCCCCCccccCCCccCEEECCCCccCCch---------------hhcccCCCCEEECcCCcCCC---------c-hhhc
Confidence 999888767899999999999999877652 25677777777777775431 1 1166
Q ss_pred CCCCCcEEEEeeccCcccCcccccccccEEEEE
Q 041360 383 GLSKLTTLEIQVRDAQILPQDLVLVELQRYKIC 415 (561)
Q Consensus 383 ~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 415 (561)
.+++|+.|+|+.|.+..++....+++|+.|++.
T Consensus 173 ~l~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~ 205 (605)
T 1m9s_A 173 GLTKLQNLYLSKNHISDLRALAGLKNLDVLELF 205 (605)
T ss_dssp TCTTCCEEECCSSCCCBCGGGTTCTTCSEEECC
T ss_pred cCCCCCEEECcCCCCCCChHHccCCCCCEEEcc
Confidence 777777777777777776655567777777774
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.53 E-value=2.3e-14 Score=139.04 Aligned_cols=143 Identities=24% Similarity=0.314 Sum_probs=118.2
Q ss_pred CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeCCCCCCCcccccCCCCCcEEE
Q 041360 243 QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLGGCRLKDIAIVGQLKKLEILS 322 (561)
Q Consensus 243 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~p~~i~~L~~L~~L~ 322 (561)
.+++|+.|+++++. +..++. ++.+++|++|++++|.+..++. +..+++|++|++++|.+..++.++.+++|++|+
T Consensus 44 ~l~~L~~L~l~~~~--i~~~~~--~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~ 118 (291)
T 1h6t_A 44 ELNSIDQIIANNSD--IKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLS 118 (291)
T ss_dssp HHHTCCEEECTTSC--CCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEE
T ss_pred hcCcccEEEccCCC--cccChh--HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEE
Confidence 67889999999987 667765 5889999999999999999887 999999999999999998866699999999999
Q ss_pred ccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhcCCCCCcEEEEeeccCcccCc
Q 041360 323 FRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIQVRDAQILPQ 402 (561)
Q Consensus 323 l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 402 (561)
+++|.+..++ .+..+++|+.|++++|.... +..+..+++|+.|+++.|.+..++.
T Consensus 119 L~~n~i~~~~---------------~l~~l~~L~~L~l~~n~l~~----------~~~l~~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 119 LEHNGISDIN---------------GLVHLPQLESLYLGNNKITD----------ITVLSRLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp CTTSCCCCCG---------------GGGGCTTCCEEECCSSCCCC----------CGGGGGCTTCSEEECCSSCCCCCGG
T ss_pred CCCCcCCCCh---------------hhcCCCCCCEEEccCCcCCc----------chhhccCCCCCEEEccCCccccchh
Confidence 9999877653 26788899999999886531 1467888999999999988877766
Q ss_pred ccccccccEEEEE
Q 041360 403 DLVLVELQRYKIC 415 (561)
Q Consensus 403 ~~~~~~L~~L~l~ 415 (561)
...+++|+.|++.
T Consensus 174 l~~l~~L~~L~L~ 186 (291)
T 1h6t_A 174 LAGLTKLQNLYLS 186 (291)
T ss_dssp GTTCTTCCEEECC
T ss_pred hcCCCccCEEECC
Confidence 5567777777763
No 90
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.53 E-value=6e-14 Score=127.83 Aligned_cols=147 Identities=14% Similarity=0.165 Sum_probs=107.8
Q ss_pred CCceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCC-CchhhcCCCCCcEEEe
Q 041360 223 KGPIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSS-LPSSLGRLFNLQTLCL 301 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~-lp~~i~~L~~L~~L~l 301 (561)
.++++++++++.+..+|....+++|++|++++|. +..++. ++++++|++|++++|.+.. .|..++.+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~--~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVTDLTGIEYAHNIKDLTINNIH--ATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCC--CSCCGG--GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCccChHHHhcCCCCCEEEccCCC--CCcchh--hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 5678888888888877743478888888888885 555542 5788888888888888876 5777888888888888
Q ss_pred CCCCCCC--cccccCCCCCcEEEccCCc-CcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccch
Q 041360 302 GGCRLKD--IAIVGQLKKLEILSFRDSY-IEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASL 378 (561)
Q Consensus 302 ~~~~l~~--p~~i~~L~~L~~L~l~~~~-~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 378 (561)
++|.+.. |..++.+++|++|++++|. +..+| .++++++|++|++++|.... +
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~---------------~l~~l~~L~~L~l~~n~i~~----------~ 174 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM---------------PLKTLPELKSLNIQFDGVHD----------Y 174 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG---------------GGGGCSSCCEEECTTBCCCC----------C
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCccccH---------------hhcCCCCCCEEECCCCCCcC----------h
Confidence 8888776 6778888888888888886 65543 15677788888888776431 1
Q ss_pred HhhcCCCCCcEEEEeeccCc
Q 041360 379 AELKGLSKLTTLEIQVRDAQ 398 (561)
Q Consensus 379 ~~l~~l~~L~~L~l~~~~~~ 398 (561)
..+..+++|+.|+++.|.+.
T Consensus 175 ~~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 175 RGIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp TTGGGCSSCCEEEECBC---
T ss_pred HHhccCCCCCEEEeeCcccC
Confidence 24667778888888877654
No 91
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.52 E-value=2.5e-14 Score=141.99 Aligned_cols=219 Identities=18% Similarity=0.109 Sum_probs=134.8
Q ss_pred CCceEEEccCCCccccCCcc-CC--CCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCC--CchhhcCCCCCc
Q 041360 223 KGPIAISLPHRDIQELPERL-QC--PNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSS--LPSSLGRLFNLQ 297 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~-~~--~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~--lp~~i~~L~~L~ 297 (561)
...++++++++.+. +..+ .+ ++++.|++.++. +...+..+ .++++|++|++++|.+.. +|..+..+++|+
T Consensus 47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~--l~~~~~~~-~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSF--MDQPLAEH-FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCE--ECSCCCSC-CCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hhheeeccccccCC--HHHHHhhhhccceEEEcCCcc--ccccchhh-ccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 44677888776654 2222 33 678888887776 43443333 467888888888887764 677778888888
Q ss_pred EEEeCCCCCCC--cccccCCCCCcEEEccCC-cCcc--cChhhhccccccccCchhhcCCCCCcEEEccCC-cccccccC
Q 041360 298 TLCLGGCRLKD--IAIVGQLKKLEILSFRDS-YIEE--LPHEIGQLTRLVVIAPNLISKFSQLEELYMGDS-FSQWDKVE 371 (561)
Q Consensus 298 ~L~l~~~~l~~--p~~i~~L~~L~~L~l~~~-~~~~--lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~-~~~~~~~~ 371 (561)
+|++++|.+.. +..++.+++|++|++++| .+.. +|. .+.++++|++|++++| ....
T Consensus 122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~--------------~~~~~~~L~~L~l~~~~~l~~---- 183 (336)
T 2ast_B 122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQT--------------LLSSCSRLDELNLSWCFDFTE---- 183 (336)
T ss_dssp EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHH--------------HHHHCTTCCEEECCCCTTCCH----
T ss_pred EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHH--------------HHhcCCCCCEEcCCCCCCcCh----
Confidence 88888888765 677778888888888887 4442 221 2566777888888877 4321
Q ss_pred CCcccchHhhcCCC-CCcEEEEeecc--Cc--ccCccc-ccccccEEEEEeccccccCCCCccccceEEEecCCccchhh
Q 041360 372 GGSNASLAELKGLS-KLTTLEIQVRD--AQ--ILPQDL-VLVELQRYKICIGEAWRMWGVTSEISRLVRLHGLENVSTLL 445 (561)
Q Consensus 372 ~~~~~~~~~l~~l~-~L~~L~l~~~~--~~--~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~ 445 (561)
......+..++ +|+.|+++.+. ++ .++... .+++|+.|++..+..+ ...
T Consensus 184 ---~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l----------------------~~~ 238 (336)
T 2ast_B 184 ---KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVML----------------------KND 238 (336)
T ss_dssp ---HHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTC----------------------CGG
T ss_pred ---HHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcC----------------------CHH
Confidence 11234566777 88888887763 22 222222 5566666666322211 111
Q ss_pred hhhhHHHhhccccceeeccccCcccccccccCCCCCCCccEEEEecC
Q 041360 446 ENYGMKMLLKEAEEIHLNELKGVQNAVHELDDGEGFPRLKHLRVESC 492 (561)
Q Consensus 446 ~~~~~~~ll~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c 492 (561)
.+..+..+ ++|+.|++.+|..+...... . ...+++|++|++.+|
T Consensus 239 ~~~~l~~l-~~L~~L~l~~~~~~~~~~~~-~-l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 239 CFQEFFQL-NYLQHLSLSRCYDIIPETLL-E-LGEIPTLKTLQVFGI 282 (336)
T ss_dssp GGGGGGGC-TTCCEEECTTCTTCCGGGGG-G-GGGCTTCCEEECTTS
T ss_pred HHHHHhCC-CCCCEeeCCCCCCCCHHHHH-H-HhcCCCCCEEeccCc
Confidence 22233344 78888888877643322110 1 345788888888877
No 92
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.51 E-value=9.5e-14 Score=128.77 Aligned_cols=148 Identities=18% Similarity=0.223 Sum_probs=102.4
Q ss_pred eEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCC-chhhcCCCCCcEEEeCCC
Q 041360 226 IAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSL-PSSLGRLFNLQTLCLGGC 304 (561)
Q Consensus 226 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~ 304 (561)
+.++.+++.+..+|..+. ++++.|+++++. +..++...|.++++|++|++++|.+..+ |..+..+.+|++|+|++|
T Consensus 14 ~~v~c~~~~l~~iP~~l~-~~l~~L~l~~n~--i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP-ETITEIRLEQNT--IKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSSCC-TTCCEEECCSSC--CCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCccC-cCCCEEECCCCc--CCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 356666777777776543 677888888876 6666665567788888888888887775 667788888888888888
Q ss_pred CCCC-c-ccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhc
Q 041360 305 RLKD-I-AIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELK 382 (561)
Q Consensus 305 ~l~~-p-~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~ 382 (561)
.++. | ..+..+++|++|++++|.+..++. ..+..+++|+.|++++|.+..... ..+.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~-------------~~~~~l~~L~~L~L~~N~l~~~~~--------~~~~ 149 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRV-------------DAFQDLHNLNLLSLYDNKLQTIAK--------GTFS 149 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT-------------TTTTTCTTCCEEECCSSCCSCCCT--------TTTT
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCH-------------HHcCCCCCCCEEECCCCcCCEECH--------HHHh
Confidence 8777 4 446778888888888877765542 236677777777777776542222 3455
Q ss_pred CCCCCcEEEEeeccC
Q 041360 383 GLSKLTTLEIQVRDA 397 (561)
Q Consensus 383 ~l~~L~~L~l~~~~~ 397 (561)
.+++|+.|+++.|.+
T Consensus 150 ~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 150 PLRAIQTMHLAQNPF 164 (220)
T ss_dssp TCTTCCEEECCSSCE
T ss_pred CCCCCCEEEeCCCCc
Confidence 667777777776654
No 93
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.51 E-value=1.4e-13 Score=128.45 Aligned_cols=148 Identities=20% Similarity=0.246 Sum_probs=113.5
Q ss_pred eEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchh-hcCCCCCcEEEeCCC
Q 041360 226 IAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSS-LGRLFNLQTLCLGGC 304 (561)
Q Consensus 226 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~ 304 (561)
+.++.+++.+..+|..+. ++|+.|+++++. +..++...|+++++|++|++++|.+..+|.. +..+++|++|+|++|
T Consensus 22 ~~v~c~~~~l~~ip~~~~-~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP-TNAQILYLHDNQ--ITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCSSCCSCCC-TTCSEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcCccCCCCC-CCCCEEEcCCCc--cCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 457777788888887553 889999999987 6666555568899999999999999888754 588899999999999
Q ss_pred CCCC-c-ccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhc
Q 041360 305 RLKD-I-AIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELK 382 (561)
Q Consensus 305 ~l~~-p-~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~ 382 (561)
.++. + ..+..+++|++|++++|.+..+|.. +.++++|++|++++|.+..... ..+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~--------------~~~l~~L~~L~L~~N~l~~~~~--------~~~~ 156 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRG--------------IERLTHLTHLALDQNQLKSIPH--------GAFD 156 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTT--------------GGGCTTCSEEECCSSCCCCCCT--------TTTT
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcc--------------cccCCCCCEEECCCCcCCccCH--------HHHh
Confidence 8888 4 4578899999999999888777643 4667778888888886542221 3466
Q ss_pred CCCCCcEEEEeeccCc
Q 041360 383 GLSKLTTLEIQVRDAQ 398 (561)
Q Consensus 383 ~l~~L~~L~l~~~~~~ 398 (561)
.+++|+.|+++.|.+.
T Consensus 157 ~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 157 RLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TCTTCCEEECTTSCBC
T ss_pred CCCCCCEEEeeCCCcc
Confidence 7788888888877654
No 94
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.50 E-value=1.2e-13 Score=128.20 Aligned_cols=149 Identities=13% Similarity=0.196 Sum_probs=113.8
Q ss_pred eEEEccCCCccccCCccCCCCccEEEeeccCCCCccc-cHHHHcCCCCccEEEecCCCCCCCch-hhcCCCCCcEEEeCC
Q 041360 226 IAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQI-SDLFFEGTEEVKVLSLTGVRFSSLPS-SLGRLFNLQTLCLGG 303 (561)
Q Consensus 226 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~l~~Lr~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~ 303 (561)
+.++++++.+..+|..+ .+.++.|+++++. +..+ +..+|+++++|++|++++|.++.+++ .+..+.+|++|+|++
T Consensus 14 ~~l~~s~n~l~~iP~~~-~~~~~~L~L~~N~--l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHI-PQYTAELRLNNNE--FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCSCC-CTTCSEEECCSSC--CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCccCC-CCCCCEEEcCCCc--CCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 47888888888888754 4557889998887 5555 44556888999999999999888754 788899999999999
Q ss_pred CCCCC-c-ccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhh
Q 041360 304 CRLKD-I-AIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAEL 381 (561)
Q Consensus 304 ~~l~~-p-~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 381 (561)
|.+.. + ..++.+++|++|++++|.+..++. ..+..+++|++|++++|.+....+ ..+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-------------~~~~~l~~L~~L~L~~N~l~~~~~--------~~~ 149 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGN-------------DSFIGLSSVRLLSLYDNQITTVAP--------GAF 149 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCT-------------TSSTTCTTCSEEECTTSCCCCBCT--------TTT
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECH-------------hHcCCCccCCEEECCCCcCCEECH--------HHh
Confidence 98887 4 568889999999999888776532 236778888888888887643323 456
Q ss_pred cCCCCCcEEEEeeccCc
Q 041360 382 KGLSKLTTLEIQVRDAQ 398 (561)
Q Consensus 382 ~~l~~L~~L~l~~~~~~ 398 (561)
..+++|+.|+++.|.+.
T Consensus 150 ~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 150 DTLHSLSTLNLLANPFN 166 (220)
T ss_dssp TTCTTCCEEECCSCCEE
T ss_pred cCCCCCCEEEecCcCCc
Confidence 77888888888877654
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.49 E-value=1.8e-14 Score=143.06 Aligned_cols=252 Identities=15% Similarity=0.087 Sum_probs=173.5
Q ss_pred CCccEEEeeccCCCCccccHHHHcCC--CCccEEEecCCCCCCCchhhcCCCCCcEEEeCCCCCCC---cccccCCCCCc
Q 041360 245 PNLELFLLFRKGYGSMQISDLFFEGT--EEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLGGCRLKD---IAIVGQLKKLE 319 (561)
Q Consensus 245 ~~L~~L~l~~~~~~~~~~~~~~~~~l--~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~---p~~i~~L~~L~ 319 (561)
..++.++++++. +. +..+..+ +++++|+++++.+...+..+..+++|++|++++|.+.. +..+..+++|+
T Consensus 47 ~~~~~l~l~~~~--~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 47 SLWQTLDLTGKN--LH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TTSSEEECTTCB--CC---HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred hhheeecccccc--CC---HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 347889998876 32 3345677 89999999999999887778899999999999999764 57789999999
Q ss_pred EEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhcCCCCCcEEEEeec-cCc
Q 041360 320 ILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIQVR-DAQ 398 (561)
Q Consensus 320 ~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~ 398 (561)
+|++++|.+... .+ ..++++++|++|++++|.... .......+.++++|+.|+++++ .++
T Consensus 122 ~L~L~~~~l~~~------------~~-~~l~~~~~L~~L~L~~~~~l~------~~~l~~~~~~~~~L~~L~l~~~~~l~ 182 (336)
T 2ast_B 122 NLSLEGLRLSDP------------IV-NTLAKNSNLVRLNLSGCSGFS------EFALQTLLSSCSRLDELNLSWCFDFT 182 (336)
T ss_dssp EEECTTCBCCHH------------HH-HHHTTCTTCSEEECTTCBSCC------HHHHHHHHHHCTTCCEEECCCCTTCC
T ss_pred EEeCcCcccCHH------------HH-HHHhcCCCCCEEECCCCCCCC------HHHHHHHHhcCCCCCEEcCCCCCCcC
Confidence 999999976521 11 126789999999999984321 1123355788999999999988 776
Q ss_pred c--cCcc-cccc-cccEEEEEecc-ccccCCCCccccceEEEecCCccchhhhhhhHHHhhccccceeeccccCccc-cc
Q 041360 399 I--LPQD-LVLV-ELQRYKICIGE-AWRMWGVTSEISRLVRLHGLENVSTLLENYGMKMLLKEAEEIHLNELKGVQN-AV 472 (561)
Q Consensus 399 ~--~~~~-~~~~-~L~~L~l~~~~-~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~ll~~L~~L~l~~~~~~~~-~~ 472 (561)
. ++.. ..++ +|++|++..+. .+. ....+..+..+ ++|+.|++.+|..+.. .+
T Consensus 183 ~~~~~~~~~~l~~~L~~L~l~~~~~~~~---------------------~~~l~~~~~~~-~~L~~L~l~~~~~l~~~~~ 240 (336)
T 2ast_B 183 EKHVQVAVAHVSETITQLNLSGYRKNLQ---------------------KSDLSTLVRRC-PNLVHLDLSDSVMLKNDCF 240 (336)
T ss_dssp HHHHHHHHHHSCTTCCEEECCSCGGGSC---------------------HHHHHHHHHHC-TTCSEEECTTCTTCCGGGG
T ss_pred hHHHHHHHHhcccCCCEEEeCCCcccCC---------------------HHHHHHHHhhC-CCCCEEeCCCCCcCCHHHH
Confidence 4 3332 2567 88888774332 110 12334445555 9999999999875443 22
Q ss_pred ccccCCCCCCCccEEEEecCCccchhhcccCcccCCcCccccccccccccccccCCCCCCCCC-CCCcccCCCccccccc
Q 041360 473 HELDDGEGFPRLKHLRVESCSEILHIVGSVGRVRRKVFPLLESLSLKKASFVILHGQKPTAAS-KGPEREKPTTSLGFNE 551 (561)
Q Consensus 473 ~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~~~~l-~~L~~L~i~~c~~l~~ 551 (561)
.. ...+++|++|++++|..+..-. . .....+++|+.|++.+|-. ... +..+ .+++.|++ .|..+..
T Consensus 241 ~~---l~~l~~L~~L~l~~~~~~~~~~--~--~~l~~~~~L~~L~l~~~i~---~~~--~~~l~~~l~~L~l-~~n~l~~ 307 (336)
T 2ast_B 241 QE---FFQLNYLQHLSLSRCYDIIPET--L--LELGEIPTLKTLQVFGIVP---DGT--LQLLKEALPHLQI-NCSHFTT 307 (336)
T ss_dssp GG---GGGCTTCCEEECTTCTTCCGGG--G--GGGGGCTTCCEEECTTSSC---TTC--HHHHHHHSTTSEE-SCCCSCC
T ss_pred HH---HhCCCCCCEeeCCCCCCCCHHH--H--HHHhcCCCCCEEeccCccC---HHH--HHHHHhhCcceEE-ecccCcc
Confidence 33 4568999999999997543221 0 1335699999999999922 111 1222 23666666 4556666
Q ss_pred cccc
Q 041360 552 IIAA 555 (561)
Q Consensus 552 ~~~~ 555 (561)
..++
T Consensus 308 ~~~~ 311 (336)
T 2ast_B 308 IARP 311 (336)
T ss_dssp TTCS
T ss_pred ccCC
Confidence 5554
No 96
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.49 E-value=8.7e-14 Score=132.81 Aligned_cols=147 Identities=22% Similarity=0.234 Sum_probs=88.6
Q ss_pred CCceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeC
Q 041360 223 KGPIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLG 302 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~ 302 (561)
.+++.+++++|.+..++....+++|+.|+++++. +..++. ++++++|++|++++|.++.+|.... .+|++|+++
T Consensus 41 ~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~--i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~ 114 (263)
T 1xeu_A 41 SGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQ--ISDLSP--LKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLD 114 (263)
T ss_dssp TTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSC--CCCCGG--GTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECC
T ss_pred CcCcEEECcCCCcccchHHhhCCCCCEEECCCCc--cCCChh--hccCCCCCEEECCCCccCCcCcccc--CcccEEEcc
Confidence 4566666666666666533356666666666665 555555 4666666666666666666654322 666666666
Q ss_pred CCCCCCcccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhc
Q 041360 303 GCRLKDIAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELK 382 (561)
Q Consensus 303 ~~~l~~p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~ 382 (561)
+|.++.++.++.+++|++|++++|.+..+| .++.+++|++|++++|..... ..+.
T Consensus 115 ~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~---------------~l~~l~~L~~L~L~~N~i~~~----------~~l~ 169 (263)
T 1xeu_A 115 NNELRDTDSLIHLKNLEILSIRNNKLKSIV---------------MLGFLSKLEVLDLHGNEITNT----------GGLT 169 (263)
T ss_dssp SSCCSBSGGGTTCTTCCEEECTTSCCCBCG---------------GGGGCTTCCEEECTTSCCCBC----------TTST
T ss_pred CCccCCChhhcCcccccEEECCCCcCCCCh---------------HHccCCCCCEEECCCCcCcch----------HHhc
Confidence 666666445666666666666666655442 145566666666666654211 3455
Q ss_pred CCCCCcEEEEeeccCccc
Q 041360 383 GLSKLTTLEIQVRDAQIL 400 (561)
Q Consensus 383 ~l~~L~~L~l~~~~~~~~ 400 (561)
.+++|+.|+++.|.+...
T Consensus 170 ~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 170 RLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp TCCCCCEEEEEEEEEECC
T ss_pred cCCCCCEEeCCCCcccCC
Confidence 666666666666655433
No 97
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.49 E-value=1.2e-14 Score=147.21 Aligned_cols=148 Identities=12% Similarity=0.135 Sum_probs=70.4
Q ss_pred CCCCccEEEeeccCCCCccc-cHH---HHcCCCCccEEEecCCCCCC----Cchhh-------cCCCCCcEEEeCCCCCC
Q 041360 243 QCPNLELFLLFRKGYGSMQI-SDL---FFEGTEEVKVLSLTGVRFSS----LPSSL-------GRLFNLQTLCLGGCRLK 307 (561)
Q Consensus 243 ~~~~L~~L~l~~~~~~~~~~-~~~---~~~~l~~Lr~L~l~~~~i~~----lp~~i-------~~L~~L~~L~l~~~~l~ 307 (561)
.+++|++|++++|. +... +.. .+.++++|++|++++|.+.. +|..+ ..+++|++|+|++|.+.
T Consensus 30 ~~~~L~~L~L~~n~--i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 30 EDDSVKEIVLSGNT--IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HCSCCCEEECTTSE--ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred cCCCccEEECCCCC--CCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 45666666666664 2221 111 13456666666666654432 23333 56666666666666654
Q ss_pred C------cccccCCCCCcEEEccCCcCcccC-hhhhc-cccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchH
Q 041360 308 D------IAIVGQLKKLEILSFRDSYIEELP-HEIGQ-LTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLA 379 (561)
Q Consensus 308 ~------p~~i~~L~~L~~L~l~~~~~~~lp-~~i~~-L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 379 (561)
. |..+..+++|++|++++|.+...+ ..+.. +..+... ..-+..++|++|++++|...... ..+...
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~--~~~~~~~~L~~L~L~~n~l~~~~----~~~l~~ 181 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVN--KKAKNAPPLRSIICGRNRLENGS----MKEWAK 181 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHH--HHHHTCCCCCEEECCSSCCTGGG----HHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhh--hhcccCCCCcEEECCCCCCCcHH----HHHHHH
Confidence 3 235566666666666666554221 11110 0000000 00011156666666666542100 001223
Q ss_pred hhcCCCCCcEEEEeeccCc
Q 041360 380 ELKGLSKLTTLEIQVRDAQ 398 (561)
Q Consensus 380 ~l~~l~~L~~L~l~~~~~~ 398 (561)
.+..+++|+.|+++.|.+.
T Consensus 182 ~l~~~~~L~~L~L~~n~l~ 200 (386)
T 2ca6_A 182 TFQSHRLLHTVKMVQNGIR 200 (386)
T ss_dssp HHHHCTTCCEEECCSSCCC
T ss_pred HHHhCCCcCEEECcCCCCC
Confidence 4555666666666666554
No 98
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.48 E-value=3e-13 Score=134.97 Aligned_cols=233 Identities=12% Similarity=0.067 Sum_probs=147.8
Q ss_pred cEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCch-hhcCCCCCcEEEeCCCCCCC--c-ccccCCCCCcEE-E
Q 041360 248 ELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPS-SLGRLFNLQTLCLGGCRLKD--I-AIVGQLKKLEIL-S 322 (561)
Q Consensus 248 ~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~--p-~~i~~L~~L~~L-~ 322 (561)
++++.+++. +.++|..+ .+++++|+|++|.|+.+|. .+..+++|++|+|++|.+.. + ..+.++++|+++ +
T Consensus 12 ~~v~C~~~~--Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 12 RVFLCQESK--VTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp TEEEEESTT--CCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred CEEEecCCC--CCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 566777766 77888765 3678999999999999876 57899999999999998655 3 567888888764 4
Q ss_pred ccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhcCCCCCcEEEEee-ccCcccC
Q 041360 323 FRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIQV-RDAQILP 401 (561)
Q Consensus 323 l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~ 401 (561)
+..+++..+| +..++.+++|++|++++|.+..... .......++..|++.. +.+..++
T Consensus 87 ~~~N~l~~l~-------------~~~f~~l~~L~~L~l~~n~l~~~~~--------~~~~~~~~l~~l~l~~~~~i~~l~ 145 (350)
T 4ay9_X 87 EKANNLLYIN-------------PEAFQNLPNLQYLLISNTGIKHLPD--------VHKIHSLQKVLLDIQDNINIHTIE 145 (350)
T ss_dssp EEETTCCEEC-------------TTSBCCCTTCCEEEEEEECCSSCCC--------CTTCCBSSCEEEEEESCTTCCEEC
T ss_pred ccCCcccccC-------------chhhhhccccccccccccccccCCc--------hhhcccchhhhhhhcccccccccc
Confidence 4456666554 3347888999999998886543222 1233445667777753 5566555
Q ss_pred ccc--c-cccccEEEEEeccccccC-CCCccccceEEEecCCccchhhhh-hhHHHhhccccceeeccccCccccccccc
Q 041360 402 QDL--V-LVELQRYKICIGEAWRMW-GVTSEISRLVRLHGLENVSTLLEN-YGMKMLLKEAEEIHLNELKGVQNAVHELD 476 (561)
Q Consensus 402 ~~~--~-~~~L~~L~l~~~~~~~~~-~~~~~~~~l~~L~~~~~~~~~~~~-~~~~~ll~~L~~L~l~~~~~~~~~~~~~~ 476 (561)
... . ...++.|++... .+... .......++..+.+.++......+ +.+..+ ++|+.|+++++ .++.++.
T Consensus 146 ~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l-~~L~~LdLs~N-~l~~lp~--- 219 (350)
T 4ay9_X 146 RNSFVGLSFESVILWLNKN-GIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGA-SGPVILDISRT-RIHSLPS--- 219 (350)
T ss_dssp TTSSTTSBSSCEEEECCSS-CCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTE-ECCSEEECTTS-CCCCCCS---
T ss_pred ccchhhcchhhhhhccccc-cccCCChhhccccchhHHhhccCCcccCCCHHHhccC-cccchhhcCCC-CcCccCh---
Confidence 432 2 235666766432 22211 112233456666665422122223 334454 77777777764 4555543
Q ss_pred CCCCCCCccEEEEecCCccchhhcccCcccCCcCcccccccccc
Q 041360 477 DGEGFPRLKHLRVESCSEILHIVGSVGRVRRKVFPLLESLSLKK 520 (561)
Q Consensus 477 ~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~ 520 (561)
+.|.+|+.|.+.++.+++.+| ....|++|+.+.+.+
T Consensus 220 --~~~~~L~~L~~l~~~~l~~lP------~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 220 --YGLENLKKLRARSTYNLKKLP------TLEKLVALMEASLTY 255 (350)
T ss_dssp --SSCTTCCEEECTTCTTCCCCC------CTTTCCSCCEEECSC
T ss_pred --hhhccchHhhhccCCCcCcCC------CchhCcChhhCcCCC
Confidence 347777777777777777777 345677777777653
No 99
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.48 E-value=1.1e-13 Score=127.36 Aligned_cols=147 Identities=17% Similarity=0.248 Sum_probs=85.7
Q ss_pred EEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchh-hcCCCCCcEEEeCCCC
Q 041360 227 AISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSS-LGRLFNLQTLCLGGCR 305 (561)
Q Consensus 227 ~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~~ 305 (561)
.+...++.+..+|..+ .++|+.|+++++. +..++...|+++++|++|++++|.++.+|.. +..+.+|++|++++|.
T Consensus 11 ~v~c~~~~l~~~p~~~-~~~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI-PAQTTYLDLETNS--LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp EEECCSSCCSSCCSCC-CTTCSEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCccCCCCCC-CCCCcEEEcCCCc--cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 3444555555555433 3466666666665 4555555556666777777776666666543 4566667777777666
Q ss_pred CCC-c-ccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhcC
Q 041360 306 LKD-I-AIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKG 383 (561)
Q Consensus 306 l~~-p-~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~ 383 (561)
+.. + ..++.+++|++|++++|.+..+|.. .+.++++|++|++++|....... ..+..
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-------------~~~~l~~L~~L~l~~N~l~~~~~--------~~~~~ 146 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDG-------------VFDKLTQLKDLRLYQNQLKSVPD--------GVFDR 146 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTT-------------TTTTCTTCCEEECCSSCCSCCCT--------TTTTT
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHh-------------HhccCCcCCEEECCCCccceeCH--------HHhcc
Confidence 666 3 3456666777777766665544422 24556666666666664431111 23455
Q ss_pred CCCCcEEEEeeccC
Q 041360 384 LSKLTTLEIQVRDA 397 (561)
Q Consensus 384 l~~L~~L~l~~~~~ 397 (561)
+++|+.|+++.|..
T Consensus 147 l~~L~~L~l~~N~~ 160 (208)
T 2o6s_A 147 LTSLQYIWLHDNPW 160 (208)
T ss_dssp CTTCCEEECCSCCB
T ss_pred CCCccEEEecCCCe
Confidence 66666666666544
No 100
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.48 E-value=2.4e-13 Score=123.79 Aligned_cols=147 Identities=18% Similarity=0.193 Sum_probs=123.2
Q ss_pred CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeCCCCCCC--cccccCCCCCcE
Q 041360 243 QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLGGCRLKD--IAIVGQLKKLEI 320 (561)
Q Consensus 243 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~--p~~i~~L~~L~~ 320 (561)
.+++|+.|+++++. +..+|. +..+++|++|++++|.+..++ .+..+++|++|++++|.+.. +..++.+++|++
T Consensus 42 ~l~~L~~L~l~~n~--i~~l~~--l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 42 QMNSLTYITLANIN--VTDLTG--IEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHTCCEEEEESSC--CSCCTT--GGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hcCCccEEeccCCC--ccChHH--HhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 57889999999997 667773 589999999999999887665 78999999999999999886 789999999999
Q ss_pred EEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhcCCCCCcEEEEeeccCccc
Q 041360 321 LSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIQVRDAQIL 400 (561)
Q Consensus 321 L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 400 (561)
|++++|.+.... + ..++++++|++|++++|...... ..+..+++|+.|+++.|.+..+
T Consensus 117 L~Ls~n~i~~~~------------~-~~l~~l~~L~~L~L~~n~~i~~~---------~~l~~l~~L~~L~l~~n~i~~~ 174 (197)
T 4ezg_A 117 LDISHSAHDDSI------------L-TKINTLPKVNSIDLSYNGAITDI---------MPLKTLPELKSLNIQFDGVHDY 174 (197)
T ss_dssp EECCSSBCBGGG------------H-HHHTTCSSCCEEECCSCTBCCCC---------GGGGGCSSCCEEECTTBCCCCC
T ss_pred EEecCCccCcHh------------H-HHHhhCCCCCEEEccCCCCcccc---------HhhcCCCCCCEEECCCCCCcCh
Confidence 999999876421 1 23778999999999999632222 3588899999999999999988
Q ss_pred CcccccccccEEEEEe
Q 041360 401 PQDLVLVELQRYKICI 416 (561)
Q Consensus 401 ~~~~~~~~L~~L~l~~ 416 (561)
+....+++|+.|++..
T Consensus 175 ~~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 175 RGIEDFPKLNQLYAFS 190 (197)
T ss_dssp TTGGGCSSCCEEEECB
T ss_pred HHhccCCCCCEEEeeC
Confidence 8667889999999853
No 101
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.48 E-value=4.1e-13 Score=128.09 Aligned_cols=162 Identities=17% Similarity=0.162 Sum_probs=133.6
Q ss_pred ceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeCCC
Q 041360 225 PIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLGGC 304 (561)
Q Consensus 225 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~ 304 (561)
+..+.+..+.+..++....+++|+.|+++++. +..++. ++.+++|++|++++|.+..+|. +..+++|++|++++|
T Consensus 21 l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~--i~~l~~--l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLVSQKELSGVQNFNGDNSN--IQSLAG--MQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHTCSCTTSEECHHHHTTCSEEECTTSC--CCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSS
T ss_pred HHHHHhcCCCcccccchhhcCcCcEEECcCCC--cccchH--HhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCC
Confidence 44555666777666644478999999999997 777873 5899999999999999999988 999999999999999
Q ss_pred CCCCcccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhcCC
Q 041360 305 RLKDIAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGL 384 (561)
Q Consensus 305 ~l~~p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l 384 (561)
.++..+.+.. .+|++|++++|.+..+| .++++++|+.|++++|.... +..+..+
T Consensus 96 ~l~~l~~~~~-~~L~~L~L~~N~l~~~~---------------~l~~l~~L~~L~Ls~N~i~~----------~~~l~~l 149 (263)
T 1xeu_A 96 RLKNLNGIPS-ACLSRLFLDNNELRDTD---------------SLIHLKNLEILSIRNNKLKS----------IVMLGFL 149 (263)
T ss_dssp CCSCCTTCCC-SSCCEEECCSSCCSBSG---------------GGTTCTTCCEEECTTSCCCB----------CGGGGGC
T ss_pred ccCCcCcccc-CcccEEEccCCccCCCh---------------hhcCcccccEEECCCCcCCC----------ChHHccC
Confidence 9988333444 99999999999887653 27789999999999997631 1358889
Q ss_pred CCCcEEEEeeccCcccCcccccccccEEEEEec
Q 041360 385 SKLTTLEIQVRDAQILPQDLVLVELQRYKICIG 417 (561)
Q Consensus 385 ~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 417 (561)
++|+.|+++.|.+..++....+++|+.|++...
T Consensus 150 ~~L~~L~L~~N~i~~~~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 150 SKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp TTCCEEECTTSCCCBCTTSTTCCCCCEEEEEEE
T ss_pred CCCCEEECCCCcCcchHHhccCCCCCEEeCCCC
Confidence 999999999999988866668899999999654
No 102
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.48 E-value=1.1e-14 Score=151.41 Aligned_cols=288 Identities=15% Similarity=0.049 Sum_probs=167.5
Q ss_pred CceEEEccCCCcc-----ccCCcc-CCCCccEEEeeccCCCCcc-----ccHHHHcCCCCccEEEecCCCCCC-----Cc
Q 041360 224 GPIAISLPHRDIQ-----ELPERL-QCPNLELFLLFRKGYGSMQ-----ISDLFFEGTEEVKVLSLTGVRFSS-----LP 287 (561)
Q Consensus 224 ~l~~l~l~~~~~~-----~l~~~~-~~~~L~~L~l~~~~~~~~~-----~~~~~~~~l~~Lr~L~l~~~~i~~-----lp 287 (561)
+++++++++|.+. .++..+ .+++|++|+++++. +.. +...++....+|++|++++|.+.. ++
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~--i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~ 163 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL--LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 163 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB--CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc--CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHH
Confidence 6888888888876 344444 68889999998886 332 222222345678999998888775 46
Q ss_pred hhhcCCCCCcEEEeCCCCCCC--ccccc-----CCCCCcEEEccCCcCcc-----cChhhhccccccccC----------
Q 041360 288 SSLGRLFNLQTLCLGGCRLKD--IAIVG-----QLKKLEILSFRDSYIEE-----LPHEIGQLTRLVVIA---------- 345 (561)
Q Consensus 288 ~~i~~L~~L~~L~l~~~~l~~--p~~i~-----~L~~L~~L~l~~~~~~~-----lp~~i~~L~~L~~l~---------- 345 (561)
..+..+++|++|++++|.+.. +..+. ..++|++|++++|.+.. +|..+..+++|+.+.
T Consensus 164 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~ 243 (461)
T 1z7x_W 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVG 243 (461)
T ss_dssp HHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHH
T ss_pred HHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHH
Confidence 667778889999999888765 34443 35688899998887775 466665555552221
Q ss_pred -----chhhcCCCCCcEEEccCCcccccccCCCcccchHhhcCCCCCcEEEEeeccCcccCccc-------ccccccEEE
Q 041360 346 -----PNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIQVRDAQILPQDL-------VLVELQRYK 413 (561)
Q Consensus 346 -----~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-------~~~~L~~L~ 413 (561)
......+++|++|++++|...... .......+..+++|+.|++++|.+....... ..++|+.|+
T Consensus 244 ~~~l~~~~~~~~~~L~~L~L~~n~l~~~~----~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 319 (461)
T 1z7x_W 244 MAELCPGLLHPSSRLRTLWIWECGITAKG----CGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW 319 (461)
T ss_dssp HHHHHHHHTSTTCCCCEEECTTSCCCHHH----HHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred HHHHHHHHhcCCCCceEEECcCCCCCHHH----HHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeE
Confidence 111235778888888887543211 0113355667888888888887764322111 235888888
Q ss_pred EEeccc-------cccCCCCccccceEEEecCCccchhhhhhhHHHh----hccccceeeccccCcc----cccccccCC
Q 041360 414 ICIGEA-------WRMWGVTSEISRLVRLHGLENVSTLLENYGMKML----LKEAEEIHLNELKGVQ----NAVHELDDG 478 (561)
Q Consensus 414 l~~~~~-------~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~l----l~~L~~L~l~~~~~~~----~~~~~~~~~ 478 (561)
+..+.. ++.+.. ...++..|++.++.........+... .++|+.|++++|.-.. .++.. .
T Consensus 320 L~~n~l~~~~~~~l~~~l~--~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~---l 394 (461)
T 1z7x_W 320 VKSCSFTAACCSHFSSVLA--QNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT---L 394 (461)
T ss_dssp CTTSCCBGGGHHHHHHHHH--HCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH---H
T ss_pred cCCCCCchHHHHHHHHHHh--hCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHH---H
Confidence 754321 111111 12345566665543222223333321 2588888888764221 34433 2
Q ss_pred CCCCCccEEEEecCCccchhhccc-CcccCCcCccccccccccccc
Q 041360 479 EGFPRLKHLRVESCSEILHIVGSV-GRVRRKVFPLLESLSLKKASF 523 (561)
Q Consensus 479 ~~~~~L~~L~l~~c~~l~~l~~~~-~~~~~~~~~~L~~L~l~~c~~ 523 (561)
..+++|++|+++++ .+....-.. ...-....++|+.|.+.++..
T Consensus 395 ~~~~~L~~L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~ 439 (461)
T 1z7x_W 395 LANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439 (461)
T ss_dssp HHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCCC
T ss_pred HhCCCccEEECCCC-CCCHHHHHHHHHHhccCCcchhheeeccccc
Confidence 35788888888885 444321000 000012234566666666543
No 103
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.47 E-value=5.4e-13 Score=122.59 Aligned_cols=146 Identities=16% Similarity=0.286 Sum_probs=108.7
Q ss_pred CCceEEEccCCCccccCCcc--CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchh-hcCCCCCcEE
Q 041360 223 KGPIAISLPHRDIQELPERL--QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSS-LGRLFNLQTL 299 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~-i~~L~~L~~L 299 (561)
.++++++++++.+..++... .+++|++|+++++. +..++...|+++++|++|++++|.+..+|.. +..+++|++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK--LQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc--cCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 57888888888887777653 67888888888886 6677777678888888888888888887654 5788888888
Q ss_pred EeCCCCCCC-c-ccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccc
Q 041360 300 CLGGCRLKD-I-AIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNAS 377 (561)
Q Consensus 300 ~l~~~~l~~-p-~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 377 (561)
++++|.+.. + ..+..+++|++|++++|.+..+|.. .+.++++|+.|++++|...
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-------------~~~~l~~L~~L~l~~N~~~----------- 161 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDG-------------VFDRLTSLQYIWLHDNPWD----------- 161 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-------------TTTTCTTCCEEECCSCCBC-----------
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHH-------------HhccCCCccEEEecCCCee-----------
Confidence 888888777 4 4478888888888888877665532 2567788888888887542
Q ss_pred hHhhcCCCCCcEEEEeeccCc
Q 041360 378 LAELKGLSKLTTLEIQVRDAQ 398 (561)
Q Consensus 378 ~~~l~~l~~L~~L~l~~~~~~ 398 (561)
..+++|+.|.++.+..+
T Consensus 162 ----~~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 162 ----CTCPGIRYLSEWINKHS 178 (208)
T ss_dssp ----CCTTTTHHHHHHHHHCT
T ss_pred ----cCCCCHHHHHHHHHhCC
Confidence 23456777766666554
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.46 E-value=4.9e-13 Score=124.80 Aligned_cols=129 Identities=20% Similarity=0.289 Sum_probs=114.7
Q ss_pred CCceEEEccCCCccccCCc-c-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchh-hcCCCCCcEE
Q 041360 223 KGPIAISLPHRDIQELPER-L-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSS-LGRLFNLQTL 299 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~-i~~L~~L~~L 299 (561)
.+++.|++++|.+..++.. + .+++|+.|+++++. +..++...|+++++|++|++++|.++.+|.. +..+.+|++|
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~--l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L 117 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ--LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL 117 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC--CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeE
Confidence 7899999999999887543 4 79999999999998 7888888789999999999999999998765 6899999999
Q ss_pred EeCCCCCCC-cccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCccc
Q 041360 300 CLGGCRLKD-IAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQ 366 (561)
Q Consensus 300 ~l~~~~l~~-p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~ 366 (561)
++++|.+.. |..+..+++|++|++++|.+..+|.. .+..+++|+.|++.+|...
T Consensus 118 ~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~-------------~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 118 FMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHG-------------AFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp ECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTT-------------TTTTCTTCCEEECTTSCBC
T ss_pred eccCCcccccCcccccCCCCCEEECCCCcCCccCHH-------------HHhCCCCCCEEEeeCCCcc
Confidence 999999999 89999999999999999998877642 3778899999999998764
No 105
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.45 E-value=8.1e-14 Score=149.55 Aligned_cols=305 Identities=12% Similarity=0.033 Sum_probs=176.6
Q ss_pred CCceEEEccCCCccccC-----Ccc-CCCCccEEEeeccCCC---CccccHHHHcCCCCccEEEecCCCCCCCchhhcCC
Q 041360 223 KGPIAISLPHRDIQELP-----ERL-QCPNLELFLLFRKGYG---SMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRL 293 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~-----~~~-~~~~L~~L~l~~~~~~---~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L 293 (561)
+++++|++++|.+.... ... .+++|++|+++++.+. ...++ .++.++++|++|++++|.+..+|..+..+
T Consensus 164 ~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~-~~~~~~~~L~~L~L~~~~~~~l~~~~~~~ 242 (592)
T 3ogk_B 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLE-TIARNCRSLVSVKVGDFEILELVGFFKAA 242 (592)
T ss_dssp TTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHH-HHHHHCTTCCEEECSSCBGGGGHHHHHHC
T ss_pred CCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHH-HHHhhCCCCcEEeccCccHHHHHHHHhhh
Confidence 57888888888753322 111 6788888888887621 01233 33467888888888888888888888888
Q ss_pred CCCcEEEeCCCCCC----C-cccccCCCCCcEEEccCCcCcccChhhhccccccccC-------c----hhhcCCCCCcE
Q 041360 294 FNLQTLCLGGCRLK----D-IAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIA-------P----NLISKFSQLEE 357 (561)
Q Consensus 294 ~~L~~L~l~~~~l~----~-p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~-------~----~~i~~l~~L~~ 357 (561)
++|++|+++++... . +..+..+++|+.|+++++....+|..+..+++|+.+. . ..+.++++|++
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~ 322 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEV 322 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCE
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCE
Confidence 88888888754321 2 4567777788888887766666666655555552221 1 12467788888
Q ss_pred EEccCCcccccccCCCcccchHhhcCCCCCcEEEEe-----------eccCccc--Ccc-cccccccEEEEEecccccc-
Q 041360 358 LYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIQ-----------VRDAQIL--PQD-LVLVELQRYKICIGEAWRM- 422 (561)
Q Consensus 358 L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~-----------~~~~~~~--~~~-~~~~~L~~L~l~~~~~~~~- 422 (561)
|++.++... .........+++|+.|+++ ++.++.. +.. ..+++|+.|++.. ..+..
T Consensus 323 L~L~~~~~~--------~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~-~~l~~~ 393 (592)
T 3ogk_B 323 LETRNVIGD--------RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYV-SDITNE 393 (592)
T ss_dssp EEEEGGGHH--------HHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEE-SCCCHH
T ss_pred EeccCccCH--------HHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeec-CCccHH
Confidence 887733211 1122333567778888888 3444321 111 1467888888732 22211
Q ss_pred ---CC-CCccccceEEEecCC-ccchh------hhhhhHHHhhccccceeeccccC-ccccc-ccccCCCCCCCccEEEE
Q 041360 423 ---WG-VTSEISRLVRLHGLE-NVSTL------LENYGMKMLLKEAEEIHLNELKG-VQNAV-HELDDGEGFPRLKHLRV 489 (561)
Q Consensus 423 ---~~-~~~~~~~l~~L~~~~-~~~~~------~~~~~~~~ll~~L~~L~l~~~~~-~~~~~-~~~~~~~~~~~L~~L~l 489 (561)
.+ ...+.++.+.+...+ +.... ..+..+.. +++|+.|+++.|.+ +.... ..+ ...+++|++|++
T Consensus 394 ~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~-~~~L~~L~L~~~~~~l~~~~~~~~--~~~~~~L~~L~L 470 (592)
T 3ogk_B 394 SLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIG-CKKLRRFAFYLRQGGLTDLGLSYI--GQYSPNVRWMLL 470 (592)
T ss_dssp HHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHH-CTTCCEEEEECCGGGCCHHHHHHH--HHSCTTCCEEEE
T ss_pred HHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHh-CCCCCEEEEecCCCCccHHHHHHH--HHhCccceEeec
Confidence 11 112233333333111 11011 01112333 38889999876553 22211 111 235889999999
Q ss_pred ecCCccchhhcccCcccCCcCccccccccccccc---cccCCCCCCCCCCCCcccCCCccc
Q 041360 490 ESCSEILHIVGSVGRVRRKVFPLLESLSLKKASF---VILHGQKPTAASKGPEREKPTTSL 547 (561)
Q Consensus 490 ~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~c~~---~~~~~~~~~~~l~~L~~L~i~~c~ 547 (561)
.+|. ++...-. .....+++|++|++.+|+- .+... ...+++|+.|++.+|.
T Consensus 471 ~~n~-l~~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 471 GYVG-ESDEGLM---EFSRGCPNLQKLEMRGCCFSERAIAAA---VTKLPSLRYLWVQGYR 524 (592)
T ss_dssp CSCC-SSHHHHH---HHHTCCTTCCEEEEESCCCBHHHHHHH---HHHCSSCCEEEEESCB
T ss_pred cCCC-CCHHHHH---HHHhcCcccCeeeccCCCCcHHHHHHH---HHhcCccCeeECcCCc
Confidence 9864 5431100 1225679999999999983 12111 2357899999999998
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.45 E-value=2.8e-13 Score=144.28 Aligned_cols=158 Identities=22% Similarity=0.298 Sum_probs=130.6
Q ss_pred ccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeCCCCCCCc
Q 041360 230 LPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLGGCRLKDI 309 (561)
Q Consensus 230 l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~p 309 (561)
+..+.+..+.....+++|+.|+++++. +..++. ++.+++|++|+|++|.+..+|+ +..+++|++|+|++|.+..+
T Consensus 28 l~~~~i~~~~~~~~L~~L~~L~l~~n~--i~~l~~--l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l 102 (605)
T 1m9s_A 28 LKKKSVTDAVTQNELNSIDQIIANNSD--IKSVQG--IQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDL 102 (605)
T ss_dssp TTCSCTTSEECHHHHTTCCCCBCTTCC--CCCCTT--GGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCC
T ss_pred ccCCCcccccchhcCCCCCEEECcCCC--CCCChH--HccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCC
Confidence 333344444434468899999999987 777774 5899999999999999999887 99999999999999999886
Q ss_pred ccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhcCCCCCcE
Q 041360 310 AIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTT 389 (561)
Q Consensus 310 ~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 389 (561)
+.+..+++|++|++++|.+..+| .+..+++|+.|++++|.+.. +..+..+++|+.
T Consensus 103 ~~l~~l~~L~~L~Ls~N~l~~l~---------------~l~~l~~L~~L~Ls~N~l~~----------l~~l~~l~~L~~ 157 (605)
T 1m9s_A 103 SSLKDLKKLKSLSLEHNGISDIN---------------GLVHLPQLESLYLGNNKITD----------ITVLSRLTKLDT 157 (605)
T ss_dssp TTSTTCTTCCEEECTTSCCCCCG---------------GGGGCTTCSEEECCSSCCCC----------CGGGGSCTTCSE
T ss_pred hhhccCCCCCEEEecCCCCCCCc---------------cccCCCccCEEECCCCccCC----------chhhcccCCCCE
Confidence 68999999999999999887653 26788999999999987531 256889999999
Q ss_pred EEEeeccCcccCcccccccccEEEEEec
Q 041360 390 LEIQVRDAQILPQDLVLVELQRYKICIG 417 (561)
Q Consensus 390 L~l~~~~~~~~~~~~~~~~L~~L~l~~~ 417 (561)
|+|+.|.+..++....+++|+.|++..+
T Consensus 158 L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 158 LSLEDNQISDIVPLAGLTKLQNLYLSKN 185 (605)
T ss_dssp EECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred EECcCCcCCCchhhccCCCCCEEECcCC
Confidence 9999999988777668889999988543
No 107
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.44 E-value=6.3e-13 Score=123.19 Aligned_cols=129 Identities=20% Similarity=0.321 Sum_probs=112.9
Q ss_pred CCceEEEccCCCccccCCc-c-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchh-hcCCCCCcEE
Q 041360 223 KGPIAISLPHRDIQELPER-L-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSS-LGRLFNLQTL 299 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~-i~~L~~L~~L 299 (561)
.+++.|++++|.+..++.. + .+++|+.|+++++. +..++...|.++++|++|++++|.++.+|.. +..+++|++|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~--i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L 109 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ--ISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLL 109 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC--CCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc--CCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEE
Confidence 6899999999999988864 3 78999999999998 6677555569999999999999999999876 5889999999
Q ss_pred EeCCCCCCC--cccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCccc
Q 041360 300 CLGGCRLKD--IAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQ 366 (561)
Q Consensus 300 ~l~~~~l~~--p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~ 366 (561)
+|++|.+.. +..+..+++|++|++++|.+..+|.+ .+..+++|++|++++|...
T Consensus 110 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-------------~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG-------------TFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-------------TTTTCTTCCEEECCSSCEE
T ss_pred ECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH-------------HHhCCCCCCEEEeCCCCcC
Confidence 999999988 57899999999999999998877642 3678899999999999764
No 108
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.44 E-value=9.5e-15 Score=156.89 Aligned_cols=61 Identities=10% Similarity=0.004 Sum_probs=36.3
Q ss_pred CCCccEEEEecCCccchhhcccCcccCCcCccccccccccccc---cccCCCCCCCCCCCCcccCCCcccc
Q 041360 481 FPRLKHLRVESCSEILHIVGSVGRVRRKVFPLLESLSLKKASF---VILHGQKPTAASKGPEREKPTTSLG 548 (561)
Q Consensus 481 ~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~c~~---~~~~~~~~~~~l~~L~~L~i~~c~~ 548 (561)
+++|+.|++++|. ++...-. .-...+++|+.|++.+|+. .+... ...+++|+.|++.+|+.
T Consensus 455 ~~~L~~L~L~~~~-i~~~~~~---~l~~~~~~L~~L~L~~n~~~~~~~~~~---~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 455 AKKMEMLSVAFAG-DSDLGMH---HVLSGCDSLRKLEIRDCPFGDKALLAN---ASKLETMRSLWMSSCSV 518 (594)
T ss_dssp CTTCCEEEEESCC-SSHHHHH---HHHHHCTTCCEEEEESCSCCHHHHHHT---GGGGGGSSEEEEESSCC
T ss_pred chhccEeeccCCC-CcHHHHH---HHHhcCCCcCEEECcCCCCcHHHHHHH---HHhCCCCCEEeeeCCCC
Confidence 5667777777654 3221100 0113478888888888885 11111 24567888888888864
No 109
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.44 E-value=2.9e-13 Score=132.69 Aligned_cols=176 Identities=15% Similarity=0.091 Sum_probs=111.0
Q ss_pred CCceEEEccCCCccc-cCCc---cCCCCccEEEeeccCCCCccc---cHHHHcCCCCccEEEecCCCCCCCc-hhhcCCC
Q 041360 223 KGPIAISLPHRDIQE-LPER---LQCPNLELFLLFRKGYGSMQI---SDLFFEGTEEVKVLSLTGVRFSSLP-SSLGRLF 294 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~-l~~~---~~~~~L~~L~l~~~~~~~~~~---~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~L~ 294 (561)
.+++++++++|.+.. .|.. ..+++|++|+++++. ..... +...+..+++|++|++++|.+..+| ..++.++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 457788887777743 3333 357778888888776 22222 2222346778888888888877764 5677788
Q ss_pred CCcEEEeCCCCCCC----c--ccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCccccc
Q 041360 295 NLQTLCLGGCRLKD----I--AIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWD 368 (561)
Q Consensus 295 ~L~~L~l~~~~l~~----p--~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~ 368 (561)
+|++|++++|.+.. + ..++.+++|++|++++|.+..+|... ...++.+++|++|++++|.+...
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~----------~~l~~~l~~L~~L~Ls~N~l~~~ 239 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVC----------AALAAAGVQPHSLDLSHNSLRAT 239 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHH----------HHHHHHTCCCSSEECTTSCCCCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHH----------HHHHhcCCCCCEEECCCCCCCcc
Confidence 88888888887542 1 22367778888888887776554321 11146677788888888766433
Q ss_pred ccCCCcccchHhhcCCCCCcEEEEeeccCcccCcccccccccEEEEE
Q 041360 369 KVEGGSNASLAELKGLSKLTTLEIQVRDAQILPQDLVLVELQRYKIC 415 (561)
Q Consensus 369 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 415 (561)
.+ ..+..+..+++|+.|+++.|.++.+|.... ++|+.|++.
T Consensus 240 ~p-----~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~-~~L~~L~Ls 280 (310)
T 4glp_A 240 VN-----PSAPRCMWSSALNSLNLSFAGLEQVPKGLP-AKLRVLDLS 280 (310)
T ss_dssp CC-----SCCSSCCCCTTCCCEECCSSCCCSCCSCCC-SCCSCEECC
T ss_pred ch-----hhHHhccCcCcCCEEECCCCCCCchhhhhc-CCCCEEECC
Confidence 22 111222233688888888888777776553 677777764
No 110
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.43 E-value=6.7e-13 Score=142.38 Aligned_cols=284 Identities=12% Similarity=0.054 Sum_probs=183.4
Q ss_pred CCceEEEccCCCcccc-----CCcc-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCC----CCCchhhcC
Q 041360 223 KGPIAISLPHRDIQEL-----PERL-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRF----SSLPSSLGR 292 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l-----~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i----~~lp~~i~~ 292 (561)
++++.|+++++.+..+ +... .+++|++|++.++. +..++.. +.++++|+.|+++++.. ...+..+..
T Consensus 192 ~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~--~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE--ILELVGF-FKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp CCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB--GGGGHHH-HHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred CCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc--HHHHHHH-HhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 6899999999888532 2222 68999999999986 6667754 58999999999986432 234567788
Q ss_pred CCCCcEEEeCCCCCCC-cccccCCCCCcEEEccCCcCcc--cChhhhccccccccC----------chhhcCCCCCcEEE
Q 041360 293 LFNLQTLCLGGCRLKD-IAIVGQLKKLEILSFRDSYIEE--LPHEIGQLTRLVVIA----------PNLISKFSQLEELY 359 (561)
Q Consensus 293 L~~L~~L~l~~~~l~~-p~~i~~L~~L~~L~l~~~~~~~--lp~~i~~L~~L~~l~----------~~~i~~l~~L~~L~ 359 (561)
+.+|+.|+++++.... |..+..+++|++|++++|.+.. ++..+.++++|+.+. ......+++|++|+
T Consensus 269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~ 348 (592)
T 3ogk_B 269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLR 348 (592)
T ss_dssp CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEE
T ss_pred cccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEE
Confidence 8899999998876555 7778888999999999887542 223345555554331 11236789999999
Q ss_pred ccC----------CcccccccCCCcccchHhhcCCCCCcEEEEeeccCcccCc-c-c-ccccccEEEEEecc---ccccC
Q 041360 360 MGD----------SFSQWDKVEGGSNASLAELKGLSKLTTLEIQVRDAQILPQ-D-L-VLVELQRYKICIGE---AWRMW 423 (561)
Q Consensus 360 l~~----------~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~-~-~~~~L~~L~l~~~~---~~~~~ 423 (561)
+.+ |.... ..........+++|+.|+++++.++.... . . .+++|+.|++.... .+...
T Consensus 349 L~~g~~~~~~~~~~~~~~------~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~ 422 (592)
T 3ogk_B 349 IERGADEQGMEDEEGLVS------QRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL 422 (592)
T ss_dssp EECCCCSSTTSSTTCCCC------HHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC
T ss_pred eecCccccccccccCccC------HHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc
Confidence 983 32211 11222334568999999998887754221 1 1 47899999997432 22211
Q ss_pred ---------CCCccccceEEEecCCccchhhhhhhHHHhhccccceeeccccCccc--ccccccCCCCCCCccEEEEecC
Q 041360 424 ---------GVTSEISRLVRLHGLENVSTLLENYGMKMLLKEAEEIHLNELKGVQN--AVHELDDGEGFPRLKHLRVESC 492 (561)
Q Consensus 424 ---------~~~~~~~~l~~L~~~~~~~~~~~~~~~~~ll~~L~~L~l~~~~~~~~--~~~~~~~~~~~~~L~~L~l~~c 492 (561)
......++.+.|..+.+.........+...+++|+.|++.++. +.. ++.. ..++++|++|+|++|
T Consensus 423 p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~---~~~~~~L~~L~l~~n 498 (592)
T 3ogk_B 423 PLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEF---SRGCPNLQKLEMRGC 498 (592)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHH---HTCCTTCCEEEEESC
T ss_pred hHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHH---HhcCcccCeeeccCC
Confidence 1123334444443212111222334444435899999999765 332 2221 357899999999999
Q ss_pred CccchhhcccCcccCCcCccccccccccccc
Q 041360 493 SEILHIVGSVGRVRRKVFPLLESLSLKKASF 523 (561)
Q Consensus 493 ~~l~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 523 (561)
+ ++.-.-. .....+++|++|.+.+|.-
T Consensus 499 ~-l~~~~~~---~~~~~l~~L~~L~ls~n~i 525 (592)
T 3ogk_B 499 C-FSERAIA---AAVTKLPSLRYLWVQGYRA 525 (592)
T ss_dssp C-CBHHHHH---HHHHHCSSCCEEEEESCBC
T ss_pred C-CcHHHHH---HHHHhcCccCeeECcCCcC
Confidence 7 5432100 1224689999999999984
No 111
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.43 E-value=2e-13 Score=136.90 Aligned_cols=236 Identities=10% Similarity=0.060 Sum_probs=121.5
Q ss_pred CCccEEEeeccCCCCccccH----HHHcCCC-CccEEEecCCCCCCC-chhhcCC-----CCCcEEEeCCCCCCC--ccc
Q 041360 245 PNLELFLLFRKGYGSMQISD----LFFEGTE-EVKVLSLTGVRFSSL-PSSLGRL-----FNLQTLCLGGCRLKD--IAI 311 (561)
Q Consensus 245 ~~L~~L~l~~~~~~~~~~~~----~~~~~l~-~Lr~L~l~~~~i~~l-p~~i~~L-----~~L~~L~l~~~~l~~--p~~ 311 (561)
++|+.|++++|. +...+. ..|.+++ +|++|++++|.+... +..+..+ .+|++|++++|.+.. +..
T Consensus 22 ~~L~~L~Ls~n~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 22 HGVTSLDLSLNN--LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp TTCCEEECTTSC--GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCceEEEccCCC--CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 347777777775 555543 3446666 677777777776654 4445443 677777777777654 232
Q ss_pred ----ccCC-CCCcEEEccCCcCcccChh-hhccccccccCchhhcCC-CCCcEEEccCCcccccccCCCcccchHhhcCC
Q 041360 312 ----VGQL-KKLEILSFRDSYIEELPHE-IGQLTRLVVIAPNLISKF-SQLEELYMGDSFSQWDKVEGGSNASLAELKGL 384 (561)
Q Consensus 312 ----i~~L-~~L~~L~l~~~~~~~lp~~-i~~L~~L~~l~~~~i~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l 384 (561)
+..+ ++|++|++++|.+...+.. +. ..+..+ ++|++|++++|....... ......+...
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~----------~~l~~~~~~L~~L~Ls~N~l~~~~~----~~l~~~l~~~ 165 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFK----------QAFSNLPASITSLNLRGNDLGIKSS----DELIQILAAI 165 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGSCHHHHH----------HHHTTSCTTCCEEECTTSCGGGSCH----HHHHHHHHTS
T ss_pred HHHHHHhCCCCccEEECcCCcCCcHHHHHHH----------HHHHhCCCceeEEEccCCcCCHHHH----HHHHHHHhcC
Confidence 3333 6777777777766554431 11 113342 467777777765432111 1223344444
Q ss_pred C-CCcEEEEeeccCcccCccc------cc-ccccEEEEEeccccccCCCCccccceEEEecCCccchhhhhhhHHHhhcc
Q 041360 385 S-KLTTLEIQVRDAQILPQDL------VL-VELQRYKICIGEAWRMWGVTSEISRLVRLHGLENVSTLLENYGMKMLLKE 456 (561)
Q Consensus 385 ~-~L~~L~l~~~~~~~~~~~~------~~-~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~ll~~ 456 (561)
+ +|+.|+++.|.+....... .. ++|+.|++..+. +. ..+ ....+..+....++
T Consensus 166 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~---------------~~~---~~~l~~~l~~~~~~ 226 (362)
T 3goz_A 166 PANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LG---------------LKS---YAELAYIFSSIPNH 226 (362)
T ss_dssp CTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GG---------------GSC---HHHHHHHHHHSCTT
T ss_pred CccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CC---------------hhH---HHHHHHHHhcCCCC
Confidence 4 7777777776665433211 22 356666553221 11 000 12233344443246
Q ss_pred ccceeeccccCcccccc-c--ccCCCCCCCccEEEEecCC-------ccchhhcccCcccCCcCcccccccccccc
Q 041360 457 AEEIHLNELKGVQNAVH-E--LDDGEGFPRLKHLRVESCS-------EILHIVGSVGRVRRKVFPLLESLSLKKAS 522 (561)
Q Consensus 457 L~~L~l~~~~~~~~~~~-~--~~~~~~~~~L~~L~l~~c~-------~l~~l~~~~~~~~~~~~~~L~~L~l~~c~ 522 (561)
|+.|+++++. +...+. . .. ...+++|++|++++|. .+..++. ....+++|+.|++.+++
T Consensus 227 L~~L~Ls~N~-l~~~~~~~l~~~-~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~-----~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 227 VVSLNLCLNC-LHGPSLENLKLL-KDSLKHLQTVYLDYDIVKNMSKEQCKALGA-----AFPNIQKIILVDKNGKE 295 (362)
T ss_dssp CCEEECCSSC-CCCCCHHHHHHT-TTTTTTCSEEEEEHHHHTTCCHHHHHHHHT-----TSTTCCEEEEECTTSCB
T ss_pred ceEEECcCCC-CCcHHHHHHHHH-HhcCCCccEEEeccCCccccCHHHHHHHHH-----HhccCCceEEEecCCCc
Confidence 7777777643 322211 0 01 3456777777777753 1222221 22345556666666554
No 112
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.40 E-value=1.8e-13 Score=138.71 Aligned_cols=178 Identities=17% Similarity=0.126 Sum_probs=125.8
Q ss_pred CCceEEEccCCCccc-----cCCcc-CCCCccEEEeeccCC--CCccccHHH------HcCCCCccEEEecCCCCCC---
Q 041360 223 KGPIAISLPHRDIQE-----LPERL-QCPNLELFLLFRKGY--GSMQISDLF------FEGTEEVKVLSLTGVRFSS--- 285 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~~--~~~~~~~~~------~~~l~~Lr~L~l~~~~i~~--- 285 (561)
.++++|++++|.+.. ++..+ .+++|++|+++++.. ....+|..+ +..+++|++|++++|.+..
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 579999999998854 22223 689999999999741 122345443 4789999999999999887
Q ss_pred --CchhhcCCCCCcEEEeCCCCCCC--ccc----ccCC---------CCCcEEEccCCcCc--ccChhhhccccccccCc
Q 041360 286 --LPSSLGRLFNLQTLCLGGCRLKD--IAI----VGQL---------KKLEILSFRDSYIE--ELPHEIGQLTRLVVIAP 346 (561)
Q Consensus 286 --lp~~i~~L~~L~~L~l~~~~l~~--p~~----i~~L---------~~L~~L~l~~~~~~--~lp~~i~~L~~L~~l~~ 346 (561)
+|..+..+++|++|+|++|.+.. +.. +..+ ++|++|++++|.+. .+|. +.
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~----------l~- 180 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE----------WA- 180 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH----------HH-
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH----------HH-
Confidence 78889999999999999999864 333 4444 89999999999875 2221 01
Q ss_pred hhhcCCCCCcEEEccCCcccccccCCCcccchH-hhcCCCCCcEEEEeeccCc-----ccCccc-ccccccEEEEE
Q 041360 347 NLISKFSQLEELYMGDSFSQWDKVEGGSNASLA-ELKGLSKLTTLEIQVRDAQ-----ILPQDL-VLVELQRYKIC 415 (561)
Q Consensus 347 ~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~~~-----~~~~~~-~~~~L~~L~l~ 415 (561)
..+..+++|++|++++|.+.... ...... .+..+++|+.|++++|.+. .++..+ .+++|+.|++.
T Consensus 181 ~~l~~~~~L~~L~L~~n~l~~~g----~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~ 252 (386)
T 2ca6_A 181 KTFQSHRLLHTVKMVQNGIRPEG----IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN 252 (386)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHH----HHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred HHHHhCCCcCEEECcCCCCCHhH----HHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECC
Confidence 12667788999999888653110 001233 6778889999999988873 333332 56677777763
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.40 E-value=1.8e-12 Score=120.11 Aligned_cols=129 Identities=19% Similarity=0.219 Sum_probs=112.3
Q ss_pred CCceEEEccCCCccccCC-c-c-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCch-hhcCCCCCcE
Q 041360 223 KGPIAISLPHRDIQELPE-R-L-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPS-SLGRLFNLQT 298 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~-~-~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~-~i~~L~~L~~ 298 (561)
..++.|++++|.+..++. . + .+++|+.|+++++. +..++...|+++++|++|++++|.+..+|. .+..+++|++
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~--i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 109 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK--ITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKT 109 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCE
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCc--CCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCE
Confidence 678999999999988843 3 3 89999999999997 777877667999999999999999999865 5899999999
Q ss_pred EEeCCCCCCC--cccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCccc
Q 041360 299 LCLGGCRLKD--IAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQ 366 (561)
Q Consensus 299 L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~ 366 (561)
|+|++|.+.. |..+..+++|++|++++|.+..++. ..+..+++|++|++++|...
T Consensus 110 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------------~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 110 LMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP-------------GAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp EECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT-------------TTTTTCTTCCEEECCSCCEE
T ss_pred EECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH-------------HHhcCCCCCCEEEecCcCCc
Confidence 9999999988 5889999999999999998876632 23778899999999999765
No 114
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.40 E-value=1.8e-12 Score=136.58 Aligned_cols=185 Identities=16% Similarity=0.169 Sum_probs=122.1
Q ss_pred CCceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeC
Q 041360 223 KGPIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLG 302 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~ 302 (561)
.+++.+++++|.+..+|..+ +++|++|++++|. +..+| +.+++|++|++++|.++.+|. ++. +|++|+++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l-~~~L~~L~Ls~N~--l~~ip----~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL-PPQITVLEITQNA--LISLP----ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC-CTTCSEEECCSSC--CSCCC----CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECC
T ss_pred CCccEEEeCCCCCCccCHhH-cCCCCEEECcCCC--Ccccc----cccCCCCEEEccCCCCCCcch-hhc--CCCEEECC
Confidence 46888888888888888765 4788999998887 66777 357888999999998888887 665 88999999
Q ss_pred CCCCCC-cccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhh
Q 041360 303 GCRLKD-IAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAEL 381 (561)
Q Consensus 303 ~~~l~~-p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 381 (561)
+|.++. |. .+++|++|++++|.+..+|. .+++|++|++++|.+.. ++ . +
T Consensus 129 ~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~-----------------~l~~L~~L~Ls~N~L~~-lp--------~-l 178 (571)
T 3cvr_A 129 NNQLTMLPE---LPALLEYINADNNQLTMLPE-----------------LPTSLEVLSVRNNQLTF-LP--------E-L 178 (571)
T ss_dssp SSCCSCCCC---CCTTCCEEECCSSCCSCCCC-----------------CCTTCCEEECCSSCCSC-CC--------C-C
T ss_pred CCcCCCCCC---cCccccEEeCCCCccCcCCC-----------------cCCCcCEEECCCCCCCC-cc--------h-h
Confidence 988888 55 67889999998888776663 34566677777665432 22 1 2
Q ss_pred cCCCCCcEEEEeeccCcccCcccccccc-------cEEEEEecc--ccccCCCCccccceEEEecCCccchhhhhhhHHH
Q 041360 382 KGLSKLTTLEIQVRDAQILPQDLVLVEL-------QRYKICIGE--AWRMWGVTSEISRLVRLHGLENVSTLLENYGMKM 452 (561)
Q Consensus 382 ~~l~~L~~L~l~~~~~~~~~~~~~~~~L-------~~L~l~~~~--~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~ 452 (561)
. ++|+.|+++.|.++.+|. +. .+| +.|++..+. .+|.+... ..++..|++.+|......+..+..
T Consensus 179 ~--~~L~~L~Ls~N~L~~lp~-~~-~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~--l~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 179 P--ESLEALDVSTNLLESLPA-VP-VRNHHSEETEIFFRCRENRITHIPENILS--LDPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp C--TTCCEEECCSSCCSSCCC-CC---------CCEEEECCSSCCCCCCGGGGG--SCTTEEEECCSSSCCHHHHHHHHH
T ss_pred h--CCCCEEECcCCCCCchhh-HH-HhhhcccccceEEecCCCcceecCHHHhc--CCCCCEEEeeCCcCCCcCHHHHHH
Confidence 2 567777777777666665 21 255 666664321 22222222 334455555555434455555555
Q ss_pred h
Q 041360 453 L 453 (561)
Q Consensus 453 l 453 (561)
+
T Consensus 253 l 253 (571)
T 3cvr_A 253 Q 253 (571)
T ss_dssp H
T ss_pred h
Confidence 4
No 115
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.39 E-value=6.6e-13 Score=133.07 Aligned_cols=156 Identities=19% Similarity=0.239 Sum_probs=92.5
Q ss_pred eEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHc-CCCCccEEEecCCCCCCCc-hhhcCCCCCcEEEeCC
Q 041360 226 IAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFE-GTEEVKVLSLTGVRFSSLP-SSLGRLFNLQTLCLGG 303 (561)
Q Consensus 226 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~l~~Lr~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~ 303 (561)
+.++.+++.+..+|..+ .+.++.|+++++. +..++...|. ++.+|++|+|++|.+..++ ..+..+.+|++|+|++
T Consensus 21 ~~l~c~~~~l~~iP~~~-~~~l~~L~Ls~N~--l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSL-PSYTALLDLSHNN--LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSSCCSSC-CTTCSEEECCSSC--CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCccCccC-CCCCCEEECCCCC--CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 35566666666666543 2446677777765 5556555555 6777777777777776664 3566777777777777
Q ss_pred CCCCC-c-ccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhh
Q 041360 304 CRLKD-I-AIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAEL 381 (561)
Q Consensus 304 ~~l~~-p-~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 381 (561)
|.++. + ..+..+++|++|++++|.+..++. ..+.++++|+.|++++|.+..-.. ..+..+
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~-------------~~~~~l~~L~~L~L~~N~l~~l~~-----~~~~~~ 159 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR-------------NAFEDMAQLQKLYLSQNQISRFPV-----ELIKDG 159 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECT-------------TTTTTCTTCCEEECCSSCCCSCCG-----GGTC--
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECH-------------HHhCCcccCCEEECCCCcCCeeCH-----HHhcCc
Confidence 77666 3 456677777777777776654431 225566667777776665432111 111112
Q ss_pred cCCCCCcEEEEeeccCcccCc
Q 041360 382 KGLSKLTTLEIQVRDAQILPQ 402 (561)
Q Consensus 382 ~~l~~L~~L~l~~~~~~~~~~ 402 (561)
..+++|+.|+++.|.+..+|.
T Consensus 160 ~~l~~L~~L~L~~N~l~~l~~ 180 (361)
T 2xot_A 160 NKLPKLMLLDLSSNKLKKLPL 180 (361)
T ss_dssp --CTTCCEEECCSSCCCCCCH
T ss_pred ccCCcCCEEECCCCCCCccCH
Confidence 456677777777776666553
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.38 E-value=1.6e-12 Score=130.28 Aligned_cols=156 Identities=19% Similarity=0.187 Sum_probs=124.1
Q ss_pred CCceEEEccCCCccccCCcc---CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCch-hhcCCCCCcE
Q 041360 223 KGPIAISLPHRDIQELPERL---QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPS-SLGRLFNLQT 298 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~-~i~~L~~L~~ 298 (561)
..++.|++++|.+..++... .+++|+.|+++++. +..++...|.++++|++|+|++|.++.+|. .+..+.+|++
T Consensus 39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~--i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 116 (361)
T 2xot_A 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH--LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEV 116 (361)
T ss_dssp TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc--CCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCE
Confidence 67899999999998887754 78999999999997 777877667999999999999999999865 6889999999
Q ss_pred EEeCCCCCCC--cccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCccc
Q 041360 299 LCLGGCRLKD--IAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNA 376 (561)
Q Consensus 299 L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~ 376 (561)
|+|++|.+.. +..+..+++|++|++++|.+..+|..+.. .+..+++|+.|++++|.+....
T Consensus 117 L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~----------~~~~l~~L~~L~L~~N~l~~l~------- 179 (361)
T 2xot_A 117 LLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK----------DGNKLPKLMLLDLSSNKLKKLP------- 179 (361)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC--------------CTTCCEEECCSSCCCCCC-------
T ss_pred EECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhc----------CcccCCcCCEEECCCCCCCccC-------
Confidence 9999999887 57899999999999999998887754310 1267889999999998764222
Q ss_pred chHhhcCCCC--CcEEEEeeccCc
Q 041360 377 SLAELKGLSK--LTTLEIQVRDAQ 398 (561)
Q Consensus 377 ~~~~l~~l~~--L~~L~l~~~~~~ 398 (561)
...+..++. |+.|++..|.+.
T Consensus 180 -~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 180 -LTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp -HHHHHHSCHHHHTTEECCSSCEE
T ss_pred -HHHhhhccHhhcceEEecCCCcc
Confidence 244555555 477888877654
No 117
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.38 E-value=1.3e-12 Score=115.55 Aligned_cols=129 Identities=22% Similarity=0.210 Sum_probs=108.1
Q ss_pred CCceEEEccCCCcc--ccCCcc-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCC-CchhhcCCCCCcE
Q 041360 223 KGPIAISLPHRDIQ--ELPERL-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSS-LPSSLGRLFNLQT 298 (561)
Q Consensus 223 ~~l~~l~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~-lp~~i~~L~~L~~ 298 (561)
.+++++++++|.+. .+|..+ .+++|++|++++|. +..+ . .++.+++|++|++++|.+.. +|..+..+++|++
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~--l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG--LISV-S-NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC--CCCC-S-SCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC--CCCh-h-hhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 78999999999997 888775 78999999999997 5555 3 35899999999999999998 7777788999999
Q ss_pred EEeCCCCCCC-c--ccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcc
Q 041360 299 LCLGGCRLKD-I--AIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFS 365 (561)
Q Consensus 299 L~l~~~~l~~-p--~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~ 365 (561)
|++++|.++. + ..++.+++|++|++++|.+..+|... ...+..+++|++|++.+|..
T Consensus 100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~----------~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYR----------ESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHH----------HHHHTTCSSCCEETTEETTS
T ss_pred EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHH----------HHHHHhCccCcEecCCCCCh
Confidence 9999999888 5 78999999999999999887766310 12377888999999888764
No 118
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.37 E-value=2.2e-13 Score=133.49 Aligned_cols=169 Identities=14% Similarity=0.063 Sum_probs=132.3
Q ss_pred CCceEEEccCCCccccCCc------cCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCC---Cch--hhc
Q 041360 223 KGPIAISLPHRDIQELPER------LQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSS---LPS--SLG 291 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~------~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~---lp~--~i~ 291 (561)
.+++.+++++|.+...... ..+++|++|++++|. +..++...|+++++|++|++++|.+.. ++. .++
T Consensus 117 ~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 194 (310)
T 4glp_A 117 LALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH--SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPH 194 (310)
T ss_dssp BCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS--SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTT
T ss_pred CCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC--cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhh
Confidence 6789999999998653221 268999999999998 677776667999999999999999765 433 347
Q ss_pred CCCCCcEEEeCCCCCCC-cc----cccCCCCCcEEEccCCcCccc-ChhhhccccccccCchhhcCCCCCcEEEccCCcc
Q 041360 292 RLFNLQTLCLGGCRLKD-IA----IVGQLKKLEILSFRDSYIEEL-PHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFS 365 (561)
Q Consensus 292 ~L~~L~~L~l~~~~l~~-p~----~i~~L~~L~~L~l~~~~~~~l-p~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~ 365 (561)
.+++|++|++++|.++. +. -++.+++|++|++++|.+..+ |..++. +..+++|++|++++|.+
T Consensus 195 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~-----------~~~~~~L~~L~Ls~N~l 263 (310)
T 4glp_A 195 KFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPR-----------CMWSSALNSLNLSFAGL 263 (310)
T ss_dssp SSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSS-----------CCCCTTCCCEECCSSCC
T ss_pred cCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHh-----------ccCcCcCCEEECCCCCC
Confidence 89999999999999987 43 257889999999999998876 544332 22347899999999977
Q ss_pred cccccCCCcccchHhhcCCCCCcEEEEeeccCcccCcccccccccEEEEE
Q 041360 366 QWDKVEGGSNASLAELKGLSKLTTLEIQVRDAQILPQDLVLVELQRYKIC 415 (561)
Q Consensus 366 ~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~ 415 (561)
. .++ ..+. ++|+.|+++.|.++.+|....+++|+.|++.
T Consensus 264 ~-~lp--------~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~L~ 302 (310)
T 4glp_A 264 E-QVP--------KGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLTLD 302 (310)
T ss_dssp C-SCC--------SCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEECS
T ss_pred C-chh--------hhhc--CCCCEEECCCCcCCCCchhhhCCCccEEECc
Confidence 5 333 2222 7999999999999988776678899988874
No 119
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.37 E-value=1.4e-12 Score=115.31 Aligned_cols=140 Identities=21% Similarity=0.175 Sum_probs=110.7
Q ss_pred CCCCccEEEeeccCCCCc--cccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeCCCCCCC--cccccCCCCC
Q 041360 243 QCPNLELFLLFRKGYGSM--QISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLGGCRLKD--IAIVGQLKKL 318 (561)
Q Consensus 243 ~~~~L~~L~l~~~~~~~~--~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~--p~~i~~L~~L 318 (561)
..++|+.|+++++. +. .+|.. +..+++|++|++++|.+..+ ..++.+++|++|++++|.+.. |..++.+++|
T Consensus 22 ~~~~L~~L~l~~n~--l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 22 TPAAVRELVLDNCK--SNDGKIEGL-TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp CTTSCSEEECCSCB--CBTTBCSSC-CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred CcccCCEEECCCCC--CChhhHHHH-HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 35789999999997 54 77765 48899999999999999888 788999999999999999887 4566679999
Q ss_pred cEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhcCCCCCcEEEEeeccCc
Q 041360 319 EILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIQVRDAQ 398 (561)
Q Consensus 319 ~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 398 (561)
++|++++|.+..+|.- ..++.+++|+.|++++|....... .....+..+++|+.|+++.+...
T Consensus 98 ~~L~Ls~N~l~~~~~~------------~~l~~l~~L~~L~l~~N~l~~~~~-----~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 98 THLNLSGNKLKDISTL------------EPLKKLECLKSLDLFNCEVTNLND-----YRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CEEECBSSSCCSSGGG------------GGGSSCSCCCEEECCSSGGGTSTT-----HHHHHHTTCSSCCEETTEETTSC
T ss_pred CEEeccCCccCcchhH------------HHHhcCCCCCEEEeeCCcCcchHH-----HHHHHHHhCccCcEecCCCCChh
Confidence 9999999988776520 226788999999999987642111 11246788999999999998887
Q ss_pred ccCcc
Q 041360 399 ILPQD 403 (561)
Q Consensus 399 ~~~~~ 403 (561)
.+|..
T Consensus 161 ~~~~~ 165 (168)
T 2ell_A 161 EAPDS 165 (168)
T ss_dssp BCCSS
T ss_pred hcccc
Confidence 76643
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.37 E-value=1.3e-12 Score=113.12 Aligned_cols=125 Identities=22% Similarity=0.216 Sum_probs=104.5
Q ss_pred CCceEEEccCCCcc--ccCCcc-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCC-CchhhcCCCCCcE
Q 041360 223 KGPIAISLPHRDIQ--ELPERL-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSS-LPSSLGRLFNLQT 298 (561)
Q Consensus 223 ~~l~~l~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~-lp~~i~~L~~L~~ 298 (561)
.+++++++++|.+. .+|..+ .+++|+.|++++|. +..+ ..++++++|++|++++|.+.. +|..++.+++|++
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~--l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG--LTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC--CCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC--CCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 67999999999997 788775 88999999999997 6566 336899999999999999998 7888888999999
Q ss_pred EEeCCCCCCC-c--ccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEcc
Q 041360 299 LCLGGCRLKD-I--AIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMG 361 (561)
Q Consensus 299 L~l~~~~l~~-p--~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~ 361 (561)
|++++|.++. + ..++.+++|++|++++|.+..+|.. +...++.+++|+.|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~----------~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDY----------RENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTH----------HHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHH----------HHHHHHHCCCcccccCC
Confidence 9999999988 4 8899999999999999988776641 01236677777777764
No 121
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.35 E-value=5.8e-12 Score=114.03 Aligned_cols=124 Identities=20% Similarity=0.285 Sum_probs=106.2
Q ss_pred eEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCc-hhhcCCCCCcEEEeCCC
Q 041360 226 IAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLP-SSLGRLFNLQTLCLGGC 304 (561)
Q Consensus 226 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~ 304 (561)
+.++++++.+..+|..+ .++|++|+++++. +..+|.. |.++++|++|++++|.++.++ ..+..+.+|++|+|++|
T Consensus 13 ~~l~~~~~~l~~ip~~~-~~~l~~L~L~~n~--i~~ip~~-~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI-PRDVTELYLDGNQ--FTLVPKE-LSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCCEEECCSSC--CCSCCGG-GGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCC-CCCCCEEECCCCc--CchhHHH-hhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 46788888898888765 4789999999997 7788865 599999999999999999986 56899999999999999
Q ss_pred CCCC--cccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCccc
Q 041360 305 RLKD--IAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQ 366 (561)
Q Consensus 305 ~l~~--p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~ 366 (561)
.++. +..++.+++|++|++++|.+..+|.+ .+..+++|+.|++++|...
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~-------------~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEG-------------AFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTT-------------TTTTCTTCCEEECCSSCEE
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChh-------------hhhcCccccEEEeCCCCee
Confidence 9888 46799999999999999988877643 3678889999999998764
No 122
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.33 E-value=6.5e-12 Score=132.28 Aligned_cols=182 Identities=15% Similarity=0.125 Sum_probs=132.1
Q ss_pred CCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeCCCCCCC-cccccCCCCCcEEEc
Q 041360 245 PNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLGGCRLKD-IAIVGQLKKLEILSF 323 (561)
Q Consensus 245 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~-p~~i~~L~~L~~L~l 323 (561)
.+++.|+++++. +..+|..+ +++|++|++++|.++.+| ..+++|++|++++|.++. |. +++ +|++|++
T Consensus 59 ~~L~~L~Ls~n~--L~~lp~~l---~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 59 NQFSELQLNRLN--LSSLPDNL---PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDV 127 (571)
T ss_dssp TTCSEEECCSSC--CSCCCSCC---CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEEC
T ss_pred CCccEEEeCCCC--CCccCHhH---cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEEC
Confidence 489999999997 66788765 378999999999999999 568999999999999988 66 666 9999999
Q ss_pred cCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhcCCCCCcEEEEeeccCcccCcc
Q 041360 324 RDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIQVRDAQILPQD 403 (561)
Q Consensus 324 ~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 403 (561)
++|.+..+|. .+++|+.|++++|.+.. ++ . .+++|+.|+++.|.++.+|.
T Consensus 128 s~N~l~~lp~-----------------~l~~L~~L~Ls~N~l~~-lp--------~---~l~~L~~L~Ls~N~L~~lp~- 177 (571)
T 3cvr_A 128 DNNQLTMLPE-----------------LPALLEYINADNNQLTM-LP--------E---LPTSLEVLSVRNNQLTFLPE- 177 (571)
T ss_dssp CSSCCSCCCC-----------------CCTTCCEEECCSSCCSC-CC--------C---CCTTCCEEECCSSCCSCCCC-
T ss_pred CCCcCCCCCC-----------------cCccccEEeCCCCccCc-CC--------C---cCCCcCEEECCCCCCCCcch-
Confidence 9998877662 46789999999997642 22 1 46899999999999998888
Q ss_pred cccccccEEEEEeccccccCCCCccccceEEEecCCccchhhhhhhHHHhhccccceeeccccCcccccccccCCCCCCC
Q 041360 404 LVLVELQRYKICIGEAWRMWGVTSEISRLVRLHGLENVSTLLENYGMKMLLKEAEEIHLNELKGVQNAVHELDDGEGFPR 483 (561)
Q Consensus 404 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~ll~~L~~L~l~~~~~~~~~~~~~~~~~~~~~ 483 (561)
+. ++|+.|++..+ .+..+.. ... ++ ....+.|+.|+++++ .++.+|..+. .+++
T Consensus 178 l~-~~L~~L~Ls~N-~L~~lp~-~~~-~L------------------~~~~~~L~~L~Ls~N-~l~~lp~~l~---~l~~ 231 (571)
T 3cvr_A 178 LP-ESLEALDVSTN-LLESLPA-VPV-RN------------------HHSEETEIFFRCREN-RITHIPENIL---SLDP 231 (571)
T ss_dssp CC-TTCCEEECCSS-CCSSCCC-CC---------------------------CCEEEECCSS-CCCCCCGGGG---GSCT
T ss_pred hh-CCCCEEECcCC-CCCchhh-HHH-hh------------------hcccccceEEecCCC-cceecCHHHh---cCCC
Confidence 44 89999988543 2221111 110 11 001144577777763 4556665532 4778
Q ss_pred ccEEEEecCC
Q 041360 484 LKHLRVESCS 493 (561)
Q Consensus 484 L~~L~l~~c~ 493 (561)
|+.|++++++
T Consensus 232 L~~L~L~~N~ 241 (571)
T 3cvr_A 232 TCTIILEDNP 241 (571)
T ss_dssp TEEEECCSSS
T ss_pred CCEEEeeCCc
Confidence 8888888753
No 123
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.32 E-value=8.7e-13 Score=132.29 Aligned_cols=232 Identities=11% Similarity=0.113 Sum_probs=148.8
Q ss_pred CCceEEEccCCCccccCC-----cc-CCC-CccEEEeeccCCCCccccHHHHcCC-----CCccEEEecCCCCCCCc-hh
Q 041360 223 KGPIAISLPHRDIQELPE-----RL-QCP-NLELFLLFRKGYGSMQISDLFFEGT-----EEVKVLSLTGVRFSSLP-SS 289 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~-----~~-~~~-~L~~L~l~~~~~~~~~~~~~~~~~l-----~~Lr~L~l~~~~i~~lp-~~ 289 (561)
.++++|++++|.+...+. .+ .++ +|++|++++|. +.......+..+ ++|++|++++|.+...+ ..
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~ 99 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNS--LGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDE 99 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSC--GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCC--CCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHH
Confidence 669999999999987764 33 677 89999999997 555433333554 99999999999988754 33
Q ss_pred ----hcCC-CCCcEEEeCCCCCCC-c-cc----ccCC-CCCcEEEccCCcCcccChhhhccccccccCchhhcCCC-CCc
Q 041360 290 ----LGRL-FNLQTLCLGGCRLKD-I-AI----VGQL-KKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFS-QLE 356 (561)
Q Consensus 290 ----i~~L-~~L~~L~l~~~~l~~-p-~~----i~~L-~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~-~L~ 356 (561)
+..+ .+|++|++++|.+.. + .. +..+ .+|++|++++|.+...... .++. .+..++ +|+
T Consensus 100 l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~--------~l~~-~l~~~~~~L~ 170 (362)
T 3goz_A 100 LVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSD--------ELIQ-ILAAIPANVN 170 (362)
T ss_dssp HHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHH--------HHHH-HHHTSCTTCC
T ss_pred HHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHH--------HHHH-HHhcCCcccc
Confidence 5555 899999999999877 3 33 4443 6999999999987643211 1111 245555 899
Q ss_pred EEEccCCcccccccCCCcccchHhhcCC-CCCcEEEEeeccCcc-----cCccc-c-cccccEEEEEeccccccCCCCcc
Q 041360 357 ELYMGDSFSQWDKVEGGSNASLAELKGL-SKLTTLEIQVRDAQI-----LPQDL-V-LVELQRYKICIGEAWRMWGVTSE 428 (561)
Q Consensus 357 ~L~l~~~~~~~~~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~-----~~~~~-~-~~~L~~L~l~~~~~~~~~~~~~~ 428 (561)
+|++++|....... .+....+... ++|+.|+++.|.+.. ++... . .++|+.|++..+. +. ..
T Consensus 171 ~L~Ls~n~l~~~~~----~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~----~~- 240 (362)
T 3goz_A 171 SLNLRGNNLASKNC----AELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LH----GP- 240 (362)
T ss_dssp EEECTTSCGGGSCH----HHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CC----CC-
T ss_pred EeeecCCCCchhhH----HHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC-CC----cH-
Confidence 99999987642222 1233455666 599999999988776 33322 2 3578888874321 11 00
Q ss_pred ccceEEEecCCccchhhhhhhHHHhhccccceeecccc-------CcccccccccCCCCCCCccEEEEecC
Q 041360 429 ISRLVRLHGLENVSTLLENYGMKMLLKEAEEIHLNELK-------GVQNAVHELDDGEGFPRLKHLRVESC 492 (561)
Q Consensus 429 ~~~l~~L~~~~~~~~~~~~~~~~~ll~~L~~L~l~~~~-------~~~~~~~~~~~~~~~~~L~~L~l~~c 492 (561)
+ .......+.. +++|+.|+++++. .+..+... ...+++|++|+++++
T Consensus 241 ----------~---~~~l~~~~~~-l~~L~~L~L~~n~l~~i~~~~~~~l~~~---~~~l~~L~~LdL~~N 294 (362)
T 3goz_A 241 ----------S---LENLKLLKDS-LKHLQTVYLDYDIVKNMSKEQCKALGAA---FPNIQKIILVDKNGK 294 (362)
T ss_dssp ----------C---HHHHHHTTTT-TTTCSEEEEEHHHHTTCCHHHHHHHHTT---STTCCEEEEECTTSC
T ss_pred ----------H---HHHHHHHHhc-CCCccEEEeccCCccccCHHHHHHHHHH---hccCCceEEEecCCC
Confidence 0 1111111222 2778888887764 12222222 345677777777764
No 124
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.32 E-value=1.7e-12 Score=139.29 Aligned_cols=293 Identities=17% Similarity=0.135 Sum_probs=157.4
Q ss_pred CCceEEEccCCCccc-----cCCcc-CCCCccEEEeeccCCCC-ccccHHHHcCCCCccEEEecCC-CCCCCchhhcCCC
Q 041360 223 KGPIAISLPHRDIQE-----LPERL-QCPNLELFLLFRKGYGS-MQISDLFFEGTEEVKVLSLTGV-RFSSLPSSLGRLF 294 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~-----l~~~~-~~~~L~~L~l~~~~~~~-~~~~~~~~~~l~~Lr~L~l~~~-~i~~lp~~i~~L~ 294 (561)
+++++|++++|.+.. ++... .+++|++|+++++...+ ......++..+++|++|++++| .+..+|..+..++
T Consensus 156 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~ 235 (594)
T 2p1m_B 156 RNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAP 235 (594)
T ss_dssp TTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCT
T ss_pred CCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCC
Confidence 578888888776532 22222 56788888887764001 1112223355688888888877 3444566666677
Q ss_pred CCcEEEeCCCCC--------------------------C-----C-cccccCCCCCcEEEccCCcCcc--cChhhhcccc
Q 041360 295 NLQTLCLGGCRL--------------------------K-----D-IAIVGQLKKLEILSFRDSYIEE--LPHEIGQLTR 340 (561)
Q Consensus 295 ~L~~L~l~~~~l--------------------------~-----~-p~~i~~L~~L~~L~l~~~~~~~--lp~~i~~L~~ 340 (561)
+|++|++.++.. . . +..+..+++|++|++++|.+.. ++.-+.++++
T Consensus 236 ~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~ 315 (594)
T 2p1m_B 236 QLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPK 315 (594)
T ss_dssp TCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTT
T ss_pred cceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCC
Confidence 777776544421 0 1 1222356777777777776442 1222334444
Q ss_pred ccccC----------chhhcCCCCCcEEEccCCccc--ccccCCCcccchHhh-cCCCCCcEEEEeeccCcccCcc-c--
Q 041360 341 LVVIA----------PNLISKFSQLEELYMGDSFSQ--WDKVEGGSNASLAEL-KGLSKLTTLEIQVRDAQILPQD-L-- 404 (561)
Q Consensus 341 L~~l~----------~~~i~~l~~L~~L~l~~~~~~--~~~~~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~~-~-- 404 (561)
|+.+. ......+++|++|++.++... ...... ....+..+ ..+++|+.|.+.++.++..... +
T Consensus 316 L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l-~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~ 394 (594)
T 2p1m_B 316 LQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVAL-TEQGLVSVSMGCPKLESVLYFCRQMTNAALITIAR 394 (594)
T ss_dssp CCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCC-CHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHH
T ss_pred cCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCC-CHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHh
Confidence 42221 011234777888877442100 000000 11122233 3478888888887776532211 1
Q ss_pred ccccccEEEEEe-----ccccccCCC-------CccccceEEEecCCccchhhhhhhHHHhhccccceeeccccCccccc
Q 041360 405 VLVELQRYKICI-----GEAWRMWGV-------TSEISRLVRLHGLENVSTLLENYGMKMLLKEAEEIHLNELKGVQNAV 472 (561)
Q Consensus 405 ~~~~L~~L~l~~-----~~~~~~~~~-------~~~~~~l~~L~~~~~~~~~~~~~~~~~ll~~L~~L~l~~~~~~~~~~ 472 (561)
.+++|+.|++.. +..+..... .....++..|++.++. .......+...+++|+.|++.+|.-.....
T Consensus 395 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~~l-~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~ 473 (594)
T 2p1m_B 395 NRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLL-TDKVFEYIGTYAKKMEMLSVAFAGDSDLGM 473 (594)
T ss_dssp HCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHCTTCCEEEEESCCSSHHHH
T ss_pred hCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecCcc-cHHHHHHHHHhchhccEeeccCCCCcHHHH
Confidence 478899999872 222221000 1112345566665422 333344444435889999998875222111
Q ss_pred ccccCCCCCCCccEEEEecCCccchhhcccCcccCCcCccccccccccccc
Q 041360 473 HELDDGEGFPRLKHLRVESCSEILHIVGSVGRVRRKVFPLLESLSLKKASF 523 (561)
Q Consensus 473 ~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 523 (561)
..+ ..++++|++|++++|+. ...... .....+++|+.|.+.+|+.
T Consensus 474 ~~l--~~~~~~L~~L~L~~n~~-~~~~~~---~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 474 HHV--LSGCDSLRKLEIRDCPF-GDKALL---ANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp HHH--HHHCTTCCEEEEESCSC-CHHHHH---HTGGGGGGSSEEEEESSCC
T ss_pred HHH--HhcCCCcCEEECcCCCC-cHHHHH---HHHHhCCCCCEEeeeCCCC
Confidence 111 24589999999999875 432210 1224689999999999986
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.32 E-value=6.5e-12 Score=113.67 Aligned_cols=125 Identities=18% Similarity=0.261 Sum_probs=105.0
Q ss_pred eEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHH-HHcCCCCccEEEecCCCCCCC-chhhcCCCCCcEEEeCC
Q 041360 226 IAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDL-FFEGTEEVKVLSLTGVRFSSL-PSSLGRLFNLQTLCLGG 303 (561)
Q Consensus 226 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~l~~Lr~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~ 303 (561)
+.++++++.++.+|..+ ..++++|+++++. +..++.. +|+++++|++|++++|.++.+ |..+..+.+|++|+|++
T Consensus 11 ~~l~~s~~~l~~ip~~~-~~~l~~L~l~~n~--i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDI-PLHTTELLLNDNE--LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSCC-CTTCSEEECCSCC--CCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccCC-CCCCCEEECCCCc--CCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 57888999999898765 3489999999997 6666653 468999999999999999997 77899999999999999
Q ss_pred CCCCC-c-ccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCccc
Q 041360 304 CRLKD-I-AIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQ 366 (561)
Q Consensus 304 ~~l~~-p-~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~ 366 (561)
|.++. + ..+..+++|++|++++|.+..++. ..++.+++|++|++++|...
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-------------~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMP-------------GSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECT-------------TSSTTCTTCCEEECTTCCBC
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCH-------------HHhhcCCCCCEEEeCCCCcc
Confidence 99988 4 668999999999999998876532 23678889999999998764
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.32 E-value=1.3e-11 Score=110.12 Aligned_cols=125 Identities=16% Similarity=0.311 Sum_probs=104.8
Q ss_pred eEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchh-hcCCCCCcEEEeCCC
Q 041360 226 IAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSS-LGRLFNLQTLCLGGC 304 (561)
Q Consensus 226 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~ 304 (561)
+.+++.++.+..+|..+ .++|+.|+++++. +..++...|+++++|++|++++|.++.+|.. +..+.+|++|++++|
T Consensus 10 ~~l~~~~~~l~~~p~~~-~~~l~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGI-PSSATRLELESNK--LQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSSCCTTC-CTTCSEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCccCCCCC-CCCCcEEEeCCCc--ccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 56778888888888554 4789999999997 6778877778999999999999999998764 689999999999999
Q ss_pred CCCC-c-ccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCccc
Q 041360 305 RLKD-I-AIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQ 366 (561)
Q Consensus 305 ~l~~-p-~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~ 366 (561)
.++. | ..++.+++|++|++++|.+..+|.+ .+..+++|++|++++|...
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~-------------~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDG-------------IFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT-------------TTTTCTTCCEEECCSSCBC
T ss_pred CccccCHHHhhCCcccCEEECcCCcceEeCHH-------------HhcCCcccCEEEecCCCee
Confidence 9988 5 4578999999999999988776643 2577889999999998764
No 127
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.30 E-value=4.6e-12 Score=112.97 Aligned_cols=129 Identities=16% Similarity=0.094 Sum_probs=104.9
Q ss_pred CCceEEEccCCCccccCCccCCC-CccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhh-cCCCCCcEEE
Q 041360 223 KGPIAISLPHRDIQELPERLQCP-NLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSL-GRLFNLQTLC 300 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i-~~L~~L~~L~ 300 (561)
.+++.+++++|.+..++....+. +|+.|++++|. +..++ . |+++++|++|++++|.+..+|+.+ ..+++|++|+
T Consensus 19 ~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~--l~~~~-~-l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 19 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE--IRKLD-G-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSC--CCEEC-C-CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred CCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCC--CCccc-c-cccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 67899999999998886655554 99999999997 65663 2 589999999999999999988665 8999999999
Q ss_pred eCCCCCCC-cc--cccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcc
Q 041360 301 LGGCRLKD-IA--IVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFS 365 (561)
Q Consensus 301 l~~~~l~~-p~--~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~ 365 (561)
+++|.+.. |. .++.+++|++|++++|.+..+|..- ...++.+++|+.|++++|..
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~----------~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYR----------LYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHH----------HHHHHHCTTCSEETTEECCH
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHH----------HHHHHHCCccceeCCCcCCH
Confidence 99999988 65 7899999999999999887766431 01267788888998887754
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.27 E-value=3.2e-12 Score=113.97 Aligned_cols=138 Identities=14% Similarity=0.091 Sum_probs=102.8
Q ss_pred CCccCCCCccEEEeeccCCCCccccHHHHcCCC-CccEEEecCCCCCCCchhhcCCCCCcEEEeCCCCCCC-cccc-cCC
Q 041360 239 PERLQCPNLELFLLFRKGYGSMQISDLFFEGTE-EVKVLSLTGVRFSSLPSSLGRLFNLQTLCLGGCRLKD-IAIV-GQL 315 (561)
Q Consensus 239 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~-~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~-p~~i-~~L 315 (561)
+....+++|+.|+++++. +..++. + ..+. +|++|++++|.++.+ +.++.+++|++|++++|.++. |+.+ +.+
T Consensus 13 ~~~~~~~~L~~L~l~~n~--l~~i~~-~-~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 87 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYK--IPVIEN-L-GATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQAL 87 (176)
T ss_dssp CEEECTTSCEEEECTTSC--CCSCCC-G-GGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred HhcCCcCCceEEEeeCCC--CchhHH-h-hhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcC
Confidence 334478889999999987 666654 3 4444 999999999998887 678889999999999999888 6444 889
Q ss_pred CCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhcCCCCCcEEEEeec
Q 041360 316 KKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIQVR 395 (561)
Q Consensus 316 ~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~ 395 (561)
++|++|++++|.+..+|.- ..++.+++|+.|++++|.... .+. .....+..+++|+.|+++.+
T Consensus 88 ~~L~~L~L~~N~i~~~~~~------------~~l~~l~~L~~L~l~~N~i~~-~~~----~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 88 PDLTELILTNNSLVELGDL------------DPLASLKSLTYLCILRNPVTN-KKH----YRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp TTCCEEECCSCCCCCGGGG------------GGGGGCTTCCEEECCSSGGGG-STT----HHHHHHHHCTTCSEETTEEC
T ss_pred CCCCEEECCCCcCCcchhh------------HhhhcCCCCCEEEecCCCCCC-cHh----HHHHHHHHCCccceeCCCcC
Confidence 9999999999988766630 126778889999999887642 110 11224677888888888876
Q ss_pred cCc
Q 041360 396 DAQ 398 (561)
Q Consensus 396 ~~~ 398 (561)
...
T Consensus 151 ~~~ 153 (176)
T 1a9n_A 151 KLK 153 (176)
T ss_dssp CHH
T ss_pred CHH
Confidence 543
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.26 E-value=5.5e-12 Score=109.07 Aligned_cols=129 Identities=21% Similarity=0.207 Sum_probs=86.3
Q ss_pred CCCccEEEeeccCCCCc--cccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeCCCCCCC--cccccCCCCCc
Q 041360 244 CPNLELFLLFRKGYGSM--QISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLGGCRLKD--IAIVGQLKKLE 319 (561)
Q Consensus 244 ~~~L~~L~l~~~~~~~~--~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~--p~~i~~L~~L~ 319 (561)
.++|+.|+++++. +. .+|.. ++.+++|++|++++|.+..+ ..++.+++|++|++++|.+.. |..++.+++|+
T Consensus 16 ~~~l~~L~l~~n~--l~~~~~~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVLDNSR--SNEGKLEGL-TDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGGCSEEECTTCB--CBTTBCCSC-CTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CccCeEEEccCCc--CChhHHHHH-HhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 4677888888876 43 66654 37788888888888887777 667778888888888888776 45556678888
Q ss_pred EEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhcCCCCCcEEEEe
Q 041360 320 ILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIQ 393 (561)
Q Consensus 320 ~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 393 (561)
+|++++|.+..+|. ...++.+++|++|++++|....... .....+..+++|+.|+++
T Consensus 92 ~L~ls~N~i~~~~~------------~~~~~~l~~L~~L~l~~N~l~~~~~-----~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 92 HLNLSGNKIKDLST------------IEPLKKLENLKSLDLFNCEVTNLND-----YRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EEECTTSCCCSHHH------------HGGGGGCTTCCEEECTTCGGGGSTT-----HHHHHHHHCTTCCEETTB
T ss_pred EEECCCCcCCChHH------------HHHHhhCCCCCEEeCcCCcccchHH-----HHHHHHHHCCCcccccCC
Confidence 88888887765531 0125677778888887775431111 011346666777776553
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.26 E-value=1.1e-11 Score=112.21 Aligned_cols=125 Identities=18% Similarity=0.189 Sum_probs=95.2
Q ss_pred cEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchh--hcCCCCCcEEEeCCCCCCC--cccccCCCCCcEEEc
Q 041360 248 ELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSS--LGRLFNLQTLCLGGCRLKD--IAIVGQLKKLEILSF 323 (561)
Q Consensus 248 ~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~--i~~L~~L~~L~l~~~~l~~--p~~i~~L~~L~~L~l 323 (561)
++++++++. +..+|..++ .+|++|++++|.+..++.. ++.+++|++|++++|.++. |..++.+++|++|++
T Consensus 11 ~~l~~s~~~--l~~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRG--LKEIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSC--CSSCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCC--cCcCccCCC---CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 678888876 677887542 3888999999988888753 7888899999999988887 578888899999999
Q ss_pred cCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhcCCCCCcEEEEeeccCc
Q 041360 324 RDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIQVRDAQ 398 (561)
Q Consensus 324 ~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 398 (561)
++|.+..+|. ..++++++|++|++++|.+....+ ..+..+++|+.|+++.|.+.
T Consensus 86 s~N~l~~~~~-------------~~~~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 86 GENKIKEISN-------------KMFLGLHQLKTLNLYDNQISCVMP--------GSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSCCCCEECS-------------SSSTTCTTCCEEECCSSCCCEECT--------TSSTTCTTCCEEECTTCCBC
T ss_pred CCCcCCccCH-------------HHhcCCCCCCEEECCCCcCCeeCH--------HHhhcCCCCCEEEeCCCCcc
Confidence 8888776543 236778888888888887653333 45667778888888777654
No 131
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.25 E-value=2.3e-11 Score=108.05 Aligned_cols=113 Identities=14% Similarity=0.207 Sum_probs=95.3
Q ss_pred eEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchh-hcCCCCCcEEEeCCC
Q 041360 226 IAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSS-LGRLFNLQTLCLGGC 304 (561)
Q Consensus 226 ~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~~ 304 (561)
+.++++++.+..+|..+. ++|+.|+++++. +..++...|+++++|++|+|++|.++.+|.. +..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~-~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP-TDKQRLWLNNNQ--ITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC-TTCSEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC-CCCcEEEeCCCC--ccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 578888889988888664 889999999997 7777666678999999999999999999876 578999999999999
Q ss_pred CCCC-cc-cccCCCCCcEEEccCCcCcccChhhhccccc
Q 041360 305 RLKD-IA-IVGQLKKLEILSFRDSYIEELPHEIGQLTRL 341 (561)
Q Consensus 305 ~l~~-p~-~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L 341 (561)
.++. |+ .+..+++|++|++++|.+...|..+..+...
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~~~~l~~~ 130 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIMYLRNW 130 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTBGGGHHHHHH
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcccccccHHHHHHH
Confidence 9988 54 4899999999999999888888766665543
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.24 E-value=4.4e-11 Score=108.17 Aligned_cols=124 Identities=18% Similarity=0.200 Sum_probs=95.4
Q ss_pred cEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeCCCCCCC--cccccCCCCCcEEEccC
Q 041360 248 ELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLGGCRLKD--IAIVGQLKKLEILSFRD 325 (561)
Q Consensus 248 ~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~--p~~i~~L~~L~~L~l~~ 325 (561)
++++++++. +..+|..+ ..+|++|++++|.++.+|..+..+.+|++|++++|.++. +..+..+++|++|++++
T Consensus 13 ~~l~~~~~~--l~~ip~~~---~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKG--LKVLPKGI---PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSC--CSSCCSCC---CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCC--CCcCCCCC---CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 567777776 77788654 367899999999998888889999999999999999888 46788999999999999
Q ss_pred CcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhcCCCCCcEEEEeeccC
Q 041360 326 SYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIQVRDA 397 (561)
Q Consensus 326 ~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 397 (561)
|.+..+|. ..++++++|++|++++|.+..... ..+..+++|+.|+++.|.+
T Consensus 88 N~l~~i~~-------------~~f~~l~~L~~L~L~~N~l~~~~~--------~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 88 NRLRCIPP-------------RTFDGLKSLRLLSLHGNDISVVPE--------GAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp SCCCBCCT-------------TTTTTCTTCCEEECCSSCCCBCCT--------TTTTTCTTCCEEECCSSCE
T ss_pred CccCEeCH-------------HHhCCCCCCCEEECCCCCCCeeCh--------hhhhcCccccEEEeCCCCe
Confidence 88776653 236788888888888887642222 3466677888888876654
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.22 E-value=1.4e-11 Score=134.56 Aligned_cols=111 Identities=19% Similarity=0.223 Sum_probs=49.1
Q ss_pred CCceEEEccCCCccccCCcc-CCCCccEEEee-----ccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCC
Q 041360 223 KGPIAISLPHRDIQELPERL-QCPNLELFLLF-----RKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNL 296 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~-~~~~L~~L~l~-----~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L 296 (561)
..++++++..+.+...+... ....|+.+.+. .+. +. ++...|..+..|++|+|++|.+..+|..+..+.+|
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~--~~-~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L 249 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENR--MV-MPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFL 249 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccc--ee-cChhhhccCCCCcEEECCCCCCCCCChhhcCCCCC
Confidence 45666777666665544332 22233333222 221 22 33444567777777777777777777777777777
Q ss_pred cEEEeCCCCCCC-cccccCCCCCcEEEccCCcCcccChhhh
Q 041360 297 QTLCLGGCRLKD-IAIVGQLKKLEILSFRDSYIEELPHEIG 336 (561)
Q Consensus 297 ~~L~l~~~~l~~-p~~i~~L~~L~~L~l~~~~~~~lp~~i~ 336 (561)
++|+|++|.++. |..+++|++|++|++++|.+..+|.+++
T Consensus 250 ~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~ 290 (727)
T 4b8c_D 250 TRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELG 290 (727)
T ss_dssp SCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGG
T ss_pred CEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhc
Confidence 777777777766 6677777777777777777666665443
No 134
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.21 E-value=4.6e-11 Score=126.32 Aligned_cols=119 Identities=22% Similarity=0.270 Sum_probs=98.9
Q ss_pred CccEEEecCCCCCCCchhhcCCCCCcEEEeCCCCCCC-cccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhc
Q 041360 272 EVKVLSLTGVRFSSLPSSLGRLFNLQTLCLGGCRLKD-IAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLIS 350 (561)
Q Consensus 272 ~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~-p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~ 350 (561)
.|++|++++|.++.+|. ++.+.+|++|+|++|.++. |..++.+++|++|++++|.+..+| . ++
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~--------------l~ 505 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-G--------------VA 505 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-G--------------GT
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-c--------------cC
Confidence 58999999999999987 9999999999999999888 899999999999999999887665 2 67
Q ss_pred CCCCCcEEEccCCcccccccCCCcccchHhhcCCCCCcEEEEeeccCcccCccc-----ccccccEEE
Q 041360 351 KFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIQVRDAQILPQDL-----VLVELQRYK 413 (561)
Q Consensus 351 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-----~~~~L~~L~ 413 (561)
++++|++|++++|.+.... .+..++.+++|+.|+++.|.++..|... .+++|+.|+
T Consensus 506 ~l~~L~~L~Ls~N~l~~~~-------~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 506 NLPRLQELLLCNNRLQQSA-------AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp TCSSCCEEECCSSCCCSSS-------TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCcEEECCCCCCCCCC-------CcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 8889999999998764322 0367888999999999999988776543 478888775
No 135
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.19 E-value=4.6e-11 Score=126.32 Aligned_cols=107 Identities=19% Similarity=0.223 Sum_probs=82.2
Q ss_pred CCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeCCCCCCCcccccCCCCCcEEEcc
Q 041360 245 PNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLGGCRLKDIAIVGQLKKLEILSFR 324 (561)
Q Consensus 245 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~p~~i~~L~~L~~L~l~ 324 (561)
..|+.|+++++. +..+|. |+++++|++|++++|.++.+|..++.+++|++|+|++|.++.++.++.+++|++|+++
T Consensus 441 ~~L~~L~Ls~n~--l~~lp~--~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 441 ADVRVLHLAHKD--LTVLCH--LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLC 516 (567)
T ss_dssp TTCSEEECTTSC--CSSCCC--GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECC
T ss_pred cCceEEEecCCC--CCCCcC--ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECC
Confidence 357888888886 666776 5788888888888888888888888888888888888888873378888888888888
Q ss_pred CCcCccc--ChhhhccccccccCchhhcCCCCCcEEEccCCcccccc
Q 041360 325 DSYIEEL--PHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDK 369 (561)
Q Consensus 325 ~~~~~~l--p~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~ 369 (561)
+|.+..+ |.. ++++++|+.|++++|.+....
T Consensus 517 ~N~l~~~~~p~~--------------l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 517 NNRLQQSAAIQP--------------LVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp SSCCCSSSTTGG--------------GGGCTTCCEEECTTSGGGGSS
T ss_pred CCCCCCCCCcHH--------------HhcCCCCCEEEecCCcCCCCc
Confidence 8877665 332 567777888888887765443
No 136
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.18 E-value=2.8e-11 Score=132.07 Aligned_cols=87 Identities=26% Similarity=0.302 Sum_probs=46.6
Q ss_pred CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeCCCCCCC-cccccCCCCCcEE
Q 041360 243 QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLGGCRLKD-IAIVGQLKKLEIL 321 (561)
Q Consensus 243 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~-p~~i~~L~~L~~L 321 (561)
.+++|+.|+++++. +..+|..+| ++++|++|+|++|.+..+|.+++.|.+|++|+|++|.++. |..+++|.+|++|
T Consensus 222 ~l~~L~~L~Ls~n~--l~~l~~~~~-~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L 298 (727)
T 4b8c_D 222 DDQLWHALDLSNLQ--IFNISANIF-KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYF 298 (727)
T ss_dssp CCCCCCEEECTTSC--CSCCCGGGG-GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEE
T ss_pred cCCCCcEEECCCCC--CCCCChhhc-CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEE
Confidence 44555555555554 345554442 5555555555555555555555555555555555555555 5555555555555
Q ss_pred EccCCcCcccC
Q 041360 322 SFRDSYIEELP 332 (561)
Q Consensus 322 ~l~~~~~~~lp 332 (561)
++++|.+..+|
T Consensus 299 ~L~~N~l~~lp 309 (727)
T 4b8c_D 299 YFFDNMVTTLP 309 (727)
T ss_dssp ECCSSCCCCCC
T ss_pred ECCCCCCCccC
Confidence 55555544444
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.17 E-value=1e-10 Score=103.49 Aligned_cols=111 Identities=16% Similarity=0.267 Sum_probs=90.1
Q ss_pred ceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchh-hcCCCCCcEEEeCC
Q 041360 225 PIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSS-LGRLFNLQTLCLGG 303 (561)
Q Consensus 225 l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~-i~~L~~L~~L~l~~ 303 (561)
.+.++++++.+..+|..+ .++|+.|+++++. +..++...|+++++|++|++++|.++.+|+. +..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~~ip~~~-~~~l~~L~L~~N~--i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGI-PTTTQVLYLYDNQ--ITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCSSCCSCC-CTTCSEEECCSSC--CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcCccCccC-CCCCcEEEcCCCc--CCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 357888888888888766 4889999999997 7777666668999999999999999998765 57899999999999
Q ss_pred CCCCC-c-ccccCCCCCcEEEccCCcCcccChhhhcc
Q 041360 304 CRLKD-I-AIVGQLKKLEILSFRDSYIEELPHEIGQL 338 (561)
Q Consensus 304 ~~l~~-p-~~i~~L~~L~~L~l~~~~~~~lp~~i~~L 338 (561)
|.++. + ..+..+++|++|++++|.+...+..+..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~l~~l 124 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACSDILYL 124 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBGGGHHH
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCchhHHHH
Confidence 99888 5 45889999999999998777665544433
No 138
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.13 E-value=1.9e-10 Score=102.44 Aligned_cols=113 Identities=20% Similarity=0.296 Sum_probs=98.1
Q ss_pred CCceEEEccCCCccccCCcc--CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchh-hcCCCCCcEE
Q 041360 223 KGPIAISLPHRDIQELPERL--QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSS-LGRLFNLQTL 299 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~-i~~L~~L~~L 299 (561)
.+++++++++|.+..++... .+++|++|+++++. +..++...|+.+++|++|++++|.++.+|.. +..+++|++|
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L 105 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ--IQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKEL 105 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc--ceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEE
Confidence 68999999999998888754 78999999999997 7788887779999999999999999998765 6899999999
Q ss_pred EeCCCCCCC-cc-cccCCCCCcEEEccCCcCcccChhhhc
Q 041360 300 CLGGCRLKD-IA-IVGQLKKLEILSFRDSYIEELPHEIGQ 337 (561)
Q Consensus 300 ~l~~~~l~~-p~-~i~~L~~L~~L~l~~~~~~~lp~~i~~ 337 (561)
++++|.++. |. .+..+++|++|++++|.+...+..+..
T Consensus 106 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~l~~ 145 (177)
T 2o6r_A 106 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 145 (177)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred ECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCccHHH
Confidence 999999988 64 468899999999999987765544443
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.03 E-value=2e-11 Score=111.00 Aligned_cols=107 Identities=16% Similarity=0.204 Sum_probs=53.4
Q ss_pred CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeCCCCCCCcccccCCCCCcEEE
Q 041360 243 QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLGGCRLKDIAIVGQLKKLEILS 322 (561)
Q Consensus 243 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~p~~i~~L~~L~~L~ 322 (561)
.+++|++|+++++. +..+| . ++++++|++|++++|.+..+|..+..+++|++|++++|.+..++.++.+++|++|+
T Consensus 46 ~l~~L~~L~ls~n~--l~~l~-~-~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~ 121 (198)
T 1ds9_A 46 TLKACKHLALSTNN--IEKIS-S-LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLY 121 (198)
T ss_dssp HTTTCSEEECSEEE--ESCCC-C-HHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEE
T ss_pred cCCCCCEEECCCCC--Ccccc-c-cccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEE
Confidence 45555555555554 33444 2 34555555555555555555555555555555555555555522455555555555
Q ss_pred ccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcc
Q 041360 323 FRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFS 365 (561)
Q Consensus 323 l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~ 365 (561)
+++|.+..+|.- ..+..+++|++|++++|..
T Consensus 122 l~~N~i~~~~~~------------~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 122 MSNNKITNWGEI------------DKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp ESEEECCCHHHH------------HHHTTTTTCSEEEECSCHH
T ss_pred CCCCcCCchhHH------------HHHhcCCCCCEEEecCCcc
Confidence 555544433210 1144555555555555543
No 140
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.03 E-value=6.8e-10 Score=98.08 Aligned_cols=102 Identities=19% Similarity=0.245 Sum_probs=84.4
Q ss_pred ccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCC-chhhcCCCCCcEEEeCCCCCCC-c-ccccCCCCCcEEEc
Q 041360 247 LELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSL-PSSLGRLFNLQTLCLGGCRLKD-I-AIVGQLKKLEILSF 323 (561)
Q Consensus 247 L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~l~~-p-~~i~~L~~L~~L~l 323 (561)
.++++++++. +..+|..+ .++|++|++++|.++.+ |..+..+.+|++|+|++|+++. | ..+..+++|++|++
T Consensus 11 ~~~l~~s~n~--l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 11 GTTVDCSGKS--LASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TTEEECTTSC--CSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCC--cCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 4678888887 77888754 38899999999999998 6678999999999999999888 5 45689999999999
Q ss_pred cCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCccc
Q 041360 324 RDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQ 366 (561)
Q Consensus 324 ~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~ 366 (561)
++|.+..+|.+ .+.++++|++|++++|...
T Consensus 86 ~~N~l~~~~~~-------------~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 86 NDNQLKSIPRG-------------AFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CSSCCCCCCTT-------------TTTTCTTCCEEECCSSCBC
T ss_pred CCCccCEeCHH-------------HhcCCCCCCEEEeCCCCCC
Confidence 99988776642 3678888999999988664
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.99 E-value=1.8e-09 Score=95.73 Aligned_cols=101 Identities=18% Similarity=0.291 Sum_probs=66.4
Q ss_pred cEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCC-chhhcCCCCCcEEEeCCCCCCC-cc-cccCCCCCcEEEcc
Q 041360 248 ELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSL-PSSLGRLFNLQTLCLGGCRLKD-IA-IVGQLKKLEILSFR 324 (561)
Q Consensus 248 ~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~l~~-p~-~i~~L~~L~~L~l~ 324 (561)
+.++++++. +..+|..+ ..+|++|++++|.+..+ |..+..+.+|++|+|++|+++. |. .+.++++|++|+++
T Consensus 15 ~~l~~~~n~--l~~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~ 89 (174)
T 2r9u_A 15 TLVNCQNIR--LASVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN 89 (174)
T ss_dssp SEEECCSSC--CSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred cEEEeCCCC--CCccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence 566666665 56666644 26777777777777776 4566777777777777777776 43 35677777777777
Q ss_pred CCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCccc
Q 041360 325 DSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQ 366 (561)
Q Consensus 325 ~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~ 366 (561)
+|.+..+|.+ .+.++++|++|++++|...
T Consensus 90 ~N~l~~l~~~-------------~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 90 DNHLKSIPRG-------------AFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SSCCCCCCTT-------------TTTTCTTCSEEECCSSCBC
T ss_pred CCccceeCHH-------------HhccccCCCEEEeCCCCcc
Confidence 7766655432 2556666777777766543
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.86 E-value=9.3e-11 Score=106.60 Aligned_cols=130 Identities=18% Similarity=0.214 Sum_probs=104.4
Q ss_pred CCceEEEccCCCccccCCccCCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeC
Q 041360 223 KGPIAISLPHRDIQELPERLQCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLG 302 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~ 302 (561)
.+++.+++++|.+..+|....+++|+.|++++|. +..+|..+ ..+++|++|++++|.+..+| .+..+++|++|+++
T Consensus 48 ~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~--l~~l~~~~-~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~ 123 (198)
T 1ds9_A 48 KACKHLALSTNNIEKISSLSGMENLRILSLGRNL--IKKIENLD-AVADTLEELWISYNQIASLS-GIEKLVNLRVLYMS 123 (198)
T ss_dssp TTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEE--ECSCSSHH-HHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEES
T ss_pred CCCCEEECCCCCCccccccccCCCCCEEECCCCC--cccccchh-hcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECC
Confidence 6899999999999888833388999999999997 66888754 77899999999999999987 68999999999999
Q ss_pred CCCCCC-c--ccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEE
Q 041360 303 GCRLKD-I--AIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELY 359 (561)
Q Consensus 303 ~~~l~~-p--~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~ 359 (561)
+|.+.. + ..+..+++|++|++++|.+...+..-. .........+..+++|+.|+
T Consensus 124 ~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~---~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 124 NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENN---ATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTT---THHHHHHHHHHHCSSCSEEC
T ss_pred CCcCCchhHHHHHhcCCCCCEEEecCCcccccccccc---chHHHHHHHHHhCCCcEEEC
Confidence 999988 4 479999999999999997765432100 00111223467888899887
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.77 E-value=2.1e-08 Score=98.77 Aligned_cols=57 Identities=21% Similarity=0.257 Sum_probs=42.7
Q ss_pred CCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCc-hhhcCCCCCcEEEeCC
Q 041360 244 CPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLP-SSLGRLFNLQTLCLGG 303 (561)
Q Consensus 244 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~ 303 (561)
+++|+.+.+.. . +..++...|.+|.+|+.|+++++.+..++ ..+..+.++.++.+..
T Consensus 100 ~~~L~~l~L~~-~--i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 100 KQTLEKVILSE-K--IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp CTTCCC-CBCT-T--CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred cCCCcEEECCc-c--ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 88999999988 5 77788888899999999999998877654 3555666666665544
No 144
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.71 E-value=3.8e-08 Score=97.71 Aligned_cols=102 Identities=14% Similarity=0.067 Sum_probs=82.2
Q ss_pred EEEccCC-CccccCCcc-CCCCccEEEeec-cCCCCccccHHHHcCCCCccEEEecCCCCCCCc-hhhcCCCCCcEEEeC
Q 041360 227 AISLPHR-DIQELPERL-QCPNLELFLLFR-KGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLP-SSLGRLFNLQTLCLG 302 (561)
Q Consensus 227 ~l~l~~~-~~~~l~~~~-~~~~L~~L~l~~-~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~L~~L~~L~l~ 302 (561)
.++.+++ .+..+|. + .+++|+.|++++ +. +..++...|+++.+|++|+|++|.+..+| ..+..|.+|++|+|+
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~--l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQH--LQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSS--CCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCC--CCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 3566666 7888888 6 778899999996 75 78888777799999999999999999875 467999999999999
Q ss_pred CCCCCC-cccccCCCCCcEEEccCCcCccc
Q 041360 303 GCRLKD-IAIVGQLKKLEILSFRDSYIEEL 331 (561)
Q Consensus 303 ~~~l~~-p~~i~~L~~L~~L~l~~~~~~~l 331 (561)
+|.+.. |+.+....+|++|++.+|.+...
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNPLHCS 118 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCCCCC
T ss_pred CCccceeCHHHcccCCceEEEeeCCCccCC
Confidence 999888 64443333499999999877644
No 145
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.70 E-value=3.3e-08 Score=98.16 Aligned_cols=100 Identities=18% Similarity=0.184 Sum_probs=83.6
Q ss_pred EEEeecc-CCCCccccHHHHcCCCCccEEEecC-CCCCCCc-hhhcCCCCCcEEEeCCCCCCC--cccccCCCCCcEEEc
Q 041360 249 LFLLFRK-GYGSMQISDLFFEGTEEVKVLSLTG-VRFSSLP-SSLGRLFNLQTLCLGGCRLKD--IAIVGQLKKLEILSF 323 (561)
Q Consensus 249 ~L~l~~~-~~~~~~~~~~~~~~l~~Lr~L~l~~-~~i~~lp-~~i~~L~~L~~L~l~~~~l~~--p~~i~~L~~L~~L~l 323 (561)
.++.+++ . +..+|. ++.+.+|++|+|++ |.+..+| ..++.|.+|++|+|++|.++. |..+++|++|++|+|
T Consensus 12 ~v~~~~~n~--l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 12 GLRCTRDGA--LDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp CEECCSSCC--CTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred EEEcCCCCC--CCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence 4566666 4 778998 59999999999996 9999987 579999999999999999998 467899999999999
Q ss_pred cCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCccc
Q 041360 324 RDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQ 366 (561)
Q Consensus 324 ~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~ 366 (561)
++|.+..+|.++ +..++ |+.|++.+|.+.
T Consensus 88 ~~N~l~~~~~~~-------------~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 88 SFNALESLSWKT-------------VQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CSSCCSCCCSTT-------------TCSCC-CCEEECCSSCCC
T ss_pred CCCccceeCHHH-------------cccCC-ceEEEeeCCCcc
Confidence 999988877543 33444 889999888654
No 146
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.58 E-value=9.1e-08 Score=94.16 Aligned_cols=199 Identities=10% Similarity=0.086 Sum_probs=107.8
Q ss_pred cccHHHHcC--------CCCccEEEecCCCCCCCch-hhcCCCCCcEEEeCCCCCCC--cccccCCCCCcEEEccCCc--
Q 041360 261 QISDLFFEG--------TEEVKVLSLTGVRFSSLPS-SLGRLFNLQTLCLGGCRLKD--IAIVGQLKKLEILSFRDSY-- 327 (561)
Q Consensus 261 ~~~~~~~~~--------l~~Lr~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~l~~--p~~i~~L~~L~~L~l~~~~-- 327 (561)
.+|...|.+ +.+|+.|++.+ .++.+++ .+..+.+|++|++.++.+.. +..+..+.++..+......
T Consensus 83 ~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~ 161 (329)
T 3sb4_A 83 FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAY 161 (329)
T ss_dssp EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHH
T ss_pred ccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhh
Confidence 455666667 77777777777 7777643 56777777777777777655 3556666666655554321
Q ss_pred --CcccC-hhhhcccccc---------ccCchhh---cCCCCCcEEEccCCcccccccCCCcccchHhhc-CCCCCcEEE
Q 041360 328 --IEELP-HEIGQLTRLV---------VIAPNLI---SKFSQLEELYMGDSFSQWDKVEGGSNASLAELK-GLSKLTTLE 391 (561)
Q Consensus 328 --~~~lp-~~i~~L~~L~---------~l~~~~i---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~-~l~~L~~L~ 391 (561)
...+. ..+.....|+ .++.... ....+++.+.+.+.... .....+. .+++|+.|+
T Consensus 162 ~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~---------~~~~~l~~~~~~L~~l~ 232 (329)
T 3sb4_A 162 RFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDN---------ADFKLIRDYMPNLVSLD 232 (329)
T ss_dssp HTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCH---------HHHHHHHHHCTTCCEEE
T ss_pred hccccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecH---------HHHHHHHHhcCCCeEEE
Confidence 01110 0011111111 1111100 12333444444332111 1112222 378999999
Q ss_pred EeeccCcccCccc--ccccccEEEEEeccccccCCCCccccceEEEecCCccchhhhhhhHHHhhcccc-ceeeccccCc
Q 041360 392 IQVRDAQILPQDL--VLVELQRYKICIGEAWRMWGVTSEISRLVRLHGLENVSTLLENYGMKMLLKEAE-EIHLNELKGV 468 (561)
Q Consensus 392 l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~ll~~L~-~L~l~~~~~~ 468 (561)
++.|.+..++... .+.+|+.+.+... + ..+ ....|..+ ++|+ .+.+.+ .+
T Consensus 233 L~~n~i~~I~~~aF~~~~~L~~l~l~~n--i------------~~I----------~~~aF~~~-~~L~~~l~l~~--~l 285 (329)
T 3sb4_A 233 ISKTNATTIPDFTFAQKKYLLKIKLPHN--L------------KTI----------GQRVFSNC-GRLAGTLELPA--SV 285 (329)
T ss_dssp CTTBCCCEECTTTTTTCTTCCEEECCTT--C------------CEE----------CTTTTTTC-TTCCEEEEECT--TC
T ss_pred CCCCCcceecHhhhhCCCCCCEEECCcc--c------------cee----------hHHHhhCC-hhccEEEEEcc--cc
Confidence 9988888888764 6778888876211 1 111 12223333 6777 888875 56
Q ss_pred ccccccccCCCCCCCccEEEEecCCccchhh
Q 041360 469 QNAVHELDDGEGFPRLKHLRVESCSEILHIV 499 (561)
Q Consensus 469 ~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~ 499 (561)
+.++... ..++++|+.+++.. ++++.++
T Consensus 286 ~~I~~~a--F~~c~~L~~l~l~~-n~i~~I~ 313 (329)
T 3sb4_A 286 TAIEFGA--FMGCDNLRYVLATG-DKITTLG 313 (329)
T ss_dssp CEECTTT--TTTCTTEEEEEECS-SCCCEEC
T ss_pred eEEchhh--hhCCccCCEEEeCC-CccCccc
Confidence 6665433 24678888888866 5666665
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.54 E-value=9e-09 Score=102.89 Aligned_cols=163 Identities=13% Similarity=0.029 Sum_probs=110.4
Q ss_pred CCceEEEccCCCccccC-----Ccc--CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCC-----chhh
Q 041360 223 KGPIAISLPHRDIQELP-----ERL--QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSL-----PSSL 290 (561)
Q Consensus 223 ~~l~~l~l~~~~~~~l~-----~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~l-----p~~i 290 (561)
+.++.+++++|.+.... ..+ ..++|+.|++++|. ........++..+++|++|+|++|.+... ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 67889999998885322 222 23689999999987 22222333445567899999999988652 2223
Q ss_pred -cCCCCCcEEEeCCCCCCC------cccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCC
Q 041360 291 -GRLFNLQTLCLGGCRLKD------IAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDS 363 (561)
Q Consensus 291 -~~L~~L~~L~l~~~~l~~------p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~ 363 (561)
...++|++|+|++|.+.. +..+...++|++|++++|.+.... +. .++. .+...++|++|++++|
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g--~~------~L~~-~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEG--LE------LLAA-QLDRNRQLQELNVAYN 221 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHH--HH------HHHH-HGGGCSCCCEEECCSS
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHH--HH------HHHH-HHhcCCCcCeEECCCC
Confidence 346789999999998765 244577889999999999865422 11 1111 2566778999999998
Q ss_pred cccccccCCCcccchHhhcCCCCCcEEEEeeccCcc
Q 041360 364 FSQWDKVEGGSNASLAELKGLSKLTTLEIQVRDAQI 399 (561)
Q Consensus 364 ~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 399 (561)
.+.... ..+....+...++|+.|++++|.+..
T Consensus 222 ~i~~~g----~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 222 GAGDTA----ALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp CCCHHH----HHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CCCHHH----HHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 653211 11334556677889999999988764
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.44 E-value=3e-08 Score=99.11 Aligned_cols=157 Identities=11% Similarity=0.047 Sum_probs=107.0
Q ss_pred CCCccEEEeeccCCCCccccHHHHc-----CCCCccEEEecCCCCCCC--chhhcCCCCCcEEEeCCCCCCC--cccc--
Q 041360 244 CPNLELFLLFRKGYGSMQISDLFFE-----GTEEVKVLSLTGVRFSSL--PSSLGRLFNLQTLCLGGCRLKD--IAIV-- 312 (561)
Q Consensus 244 ~~~L~~L~l~~~~~~~~~~~~~~~~-----~l~~Lr~L~l~~~~i~~l--p~~i~~L~~L~~L~l~~~~l~~--p~~i-- 312 (561)
.++|+.|++++|. +.......+. ...+|++|+|++|.+..- ..-...+.+|++|+|++|.+.. ...+
T Consensus 71 ~~~L~~L~Ls~n~--l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVR--MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSC--CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HhhCCEEEecCCC--CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 5679999999997 4433222222 337999999999998652 2222345689999999999876 3444
Q ss_pred ---cCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhcCCCCCcE
Q 041360 313 ---GQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTT 389 (561)
Q Consensus 313 ---~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 389 (561)
...++|++|++++|.+.... +. .++. .+...++|++|++++|.+.... .......+...++|+.
T Consensus 149 ~L~~~~~~L~~L~Ls~n~l~~~~--~~------~l~~-~L~~~~~L~~L~Ls~N~l~~~g----~~~L~~~L~~~~~L~~ 215 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNPLTAAG--VA------VLME-GLAGNTSVTHLSLLHTGLGDEG----LELLAAQLDRNRQLQE 215 (372)
T ss_dssp HHHSTTCCCCEEECCSSCCHHHH--HH------HHHH-HHHTCSSCCEEECTTSSCHHHH----HHHHHHHGGGCSCCCE
T ss_pred HHHhcCCccceeeCCCCCCChHH--HH------HHHH-HHhcCCCcCEEeCCCCCCCcHH----HHHHHHHHhcCCCcCe
Confidence 34688999999999875422 11 1111 2578889999999999753211 1133456788889999
Q ss_pred EEEeeccCcccCcc-----c-ccccccEEEEE
Q 041360 390 LEIQVRDAQILPQD-----L-VLVELQRYKIC 415 (561)
Q Consensus 390 L~l~~~~~~~~~~~-----~-~~~~L~~L~l~ 415 (561)
|++++|.+...... + ..++|+.|++.
T Consensus 216 L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls 247 (372)
T 3un9_A 216 LNVAYNGAGDTAALALARAAREHPSLELLHLY 247 (372)
T ss_dssp EECCSSCCCHHHHHHHHHHHHHCSSCCEEECT
T ss_pred EECCCCCCCHHHHHHHHHHHHhCCCCCEEecc
Confidence 99999988643221 1 45778888874
No 149
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.36 E-value=2.1e-06 Score=86.62 Aligned_cols=161 Identities=19% Similarity=0.165 Sum_probs=84.8
Q ss_pred CCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCchhhcCCCCCcEEEeCCCCCCC--cccccCCCCCcEEE
Q 041360 245 PNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPSSLGRLFNLQTLCLGGCRLKD--IAIVGQLKKLEILS 322 (561)
Q Consensus 245 ~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~~L~~L~l~~~~l~~--p~~i~~L~~L~~L~ 322 (561)
.+|+.+.+.. . +..++...|.+|.+|+.+++.++.++.+|.......+|+.+.+..+ ++. ...+.++.+|+.++
T Consensus 157 ~~L~~i~lp~-~--l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~ 232 (401)
T 4fdw_A 157 STVQEIVFPS-T--LEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIE 232 (401)
T ss_dssp CCCCEEECCT-T--CCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEE
T ss_pred CCceEEEeCC-C--ccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEe
Confidence 3566666654 2 5566666667777777777777777777665555677777777643 444 36677777777777
Q ss_pred ccCCcCcccChhhh---ccccc------cccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhcCCCCCcEEEEe
Q 041360 323 FRDSYIEELPHEIG---QLTRL------VVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIQ 393 (561)
Q Consensus 323 l~~~~~~~lp~~i~---~L~~L------~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 393 (561)
+..+ +..++...- +|+.+ ..++...+.++++|+.+.+.++....... ..-....+.++++|+.+.+.
T Consensus 233 l~~~-l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~---~~I~~~aF~~c~~L~~l~l~ 308 (401)
T 4fdw_A 233 IPEN-VSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPE---AMIHPYCLEGCPKLARFEIP 308 (401)
T ss_dssp CCTT-CCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTT---CEECTTTTTTCTTCCEECCC
T ss_pred cCCC-ccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcc---cEECHHHhhCCccCCeEEeC
Confidence 7553 343332211 11111 33444445556666666655543220000 00001234555566665555
Q ss_pred eccCcccCccc--ccccccEEEE
Q 041360 394 VRDAQILPQDL--VLVELQRYKI 414 (561)
Q Consensus 394 ~~~~~~~~~~~--~~~~L~~L~l 414 (561)
+.+..++... .+.+|+.+.+
T Consensus 309 -~~i~~I~~~aF~~c~~L~~l~l 330 (401)
T 4fdw_A 309 -ESIRILGQGLLGGNRKVTQLTI 330 (401)
T ss_dssp -TTCCEECTTTTTTCCSCCEEEE
T ss_pred -CceEEEhhhhhcCCCCccEEEE
Confidence 3344443332 3455555544
No 150
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.14 E-value=3e-06 Score=83.92 Aligned_cols=180 Identities=16% Similarity=0.095 Sum_probs=103.0
Q ss_pred CCceEEEccCCCcc---------ccCCcc-CCCCccEEEeeccCCC---C-----ccccHHHHcCCCCccEEEecCCCCC
Q 041360 223 KGPIAISLPHRDIQ---------ELPERL-QCPNLELFLLFRKGYG---S-----MQISDLFFEGTEEVKVLSLTGVRFS 284 (561)
Q Consensus 223 ~~l~~l~l~~~~~~---------~l~~~~-~~~~L~~L~l~~~~~~---~-----~~~~~~~~~~l~~Lr~L~l~~~~i~ 284 (561)
..++.|.+...... .+.+.. .+++|+.|.+...... + ..+ ..++..+++|+.|+++++.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L-~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDL-SPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBC-HHHHHTCTTCCEEEEECCBTC
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCH-HHHHhcCCCCcEEEEeCCCCc
Confidence 45667777644332 112222 5688999988654200 1 123 344578899999999887433
Q ss_pred CCchhhcCCCCCcEEEeCCCCCCC--ccccc--CCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEc
Q 041360 285 SLPSSLGRLFNLQTLCLGGCRLKD--IAIVG--QLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYM 360 (561)
Q Consensus 285 ~lp~~i~~L~~L~~L~l~~~~l~~--p~~i~--~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l 360 (561)
.++. + .+++|+.|++..|.+.. ...+. .+++|++|+++.+.-..... ..+..+..+.. ...+++|+.|++
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~--~~~~~l~~~l~--~~~~p~Lr~L~L 259 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD--GDMNVFRPLFS--KDRFPNLKWLGI 259 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCC--SCGGGTGGGSC--TTTCTTCCEEEE
T ss_pred eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccc--hhHHHHHHHHh--cCCCCCcCEEeC
Confidence 4554 4 38899999999888765 35554 78999999985421000000 00111111111 245788999998
Q ss_pred cCCcccccccCCCcccchHhhcCCCCCcEEEEeeccCccc-----Ccc-cccccccEEEE
Q 041360 361 GDSFSQWDKVEGGSNASLAELKGLSKLTTLEIQVRDAQIL-----PQD-LVLVELQRYKI 414 (561)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-----~~~-~~~~~L~~L~l 414 (561)
.+|....... ..+.+...+++|++|+|+.|.+... ... ..+++|+.|++
T Consensus 260 ~~~~i~~~~~-----~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L 314 (362)
T 2ra8_A 260 VDAEEQNVVV-----EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINM 314 (362)
T ss_dssp ESCTTHHHHH-----HHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEEC
T ss_pred CCCCCchHHH-----HHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEEC
Confidence 8776532111 1222234577899999988776542 221 24566777666
No 151
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.13 E-value=2.3e-05 Score=78.85 Aligned_cols=168 Identities=15% Similarity=0.132 Sum_probs=83.6
Q ss_pred ceEEEccCCCccccCCcc--CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCc-hhhcCCCCCcEEEe
Q 041360 225 PIAISLPHRDIQELPERL--QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLP-SSLGRLFNLQTLCL 301 (561)
Q Consensus 225 l~~l~l~~~~~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~L~~L~~L~l 301 (561)
++.+.+.. .+..++... .|++|+.+.+..+. +..++...|. +..|+.+.+..+ ++.++ ..+..+.+|+.+.+
T Consensus 159 L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~--l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l 233 (401)
T 4fdw_A 159 VQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK--ITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEI 233 (401)
T ss_dssp CCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC--CSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEEC
T ss_pred ceEEEeCC-CccEehHHHhhCcccCCeeecCCCc--ceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEec
Confidence 44444443 344443332 55666666665544 4445544443 345555555422 44432 23444445555555
Q ss_pred CCC---------------------CCCC--cccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEE
Q 041360 302 GGC---------------------RLKD--IAIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEEL 358 (561)
Q Consensus 302 ~~~---------------------~l~~--p~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L 358 (561)
..+ .++. ...+.++.+|+.+++.++.+..- .+..++...+.++++|+.+
T Consensus 234 ~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~--------~~~~I~~~aF~~c~~L~~l 305 (401)
T 4fdw_A 234 PENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDD--------PEAMIHPYCLEGCPKLARF 305 (401)
T ss_dssp CTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCC--------TTCEECTTTTTTCTTCCEE
T ss_pred CCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCC--------cccEECHHHhhCCccCCeE
Confidence 432 2222 23444455555555544332200 0013555667788888888
Q ss_pred EccCCcccccccCCCcccchHhhcCCCCCcEEEEeeccCcccCccc--ccccccEEEEEe
Q 041360 359 YMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIQVRDAQILPQDL--VLVELQRYKICI 416 (561)
Q Consensus 359 ~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~ 416 (561)
.+..+.. .+. ...+.++++|+.+.+.. .+..++... .+ +|+.+.+..
T Consensus 306 ~l~~~i~--~I~-------~~aF~~c~~L~~l~lp~-~l~~I~~~aF~~~-~L~~l~l~~ 354 (401)
T 4fdw_A 306 EIPESIR--ILG-------QGLLGGNRKVTQLTIPA-NVTQINFSAFNNT-GIKEVKVEG 354 (401)
T ss_dssp CCCTTCC--EEC-------TTTTTTCCSCCEEEECT-TCCEECTTSSSSS-CCCEEEECC
T ss_pred EeCCceE--EEh-------hhhhcCCCCccEEEECc-cccEEcHHhCCCC-CCCEEEEcC
Confidence 8774321 111 13567778888888843 344444332 45 788877743
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.02 E-value=8.4e-06 Score=80.69 Aligned_cols=182 Identities=11% Similarity=0.042 Sum_probs=85.9
Q ss_pred ccccCCCCCcEEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhcCCCCCcE
Q 041360 310 AIVGQLKKLEILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTT 389 (561)
Q Consensus 310 ~~i~~L~~L~~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~ 389 (561)
..+.++++|+.|.+.........-++... ..+. ..+..+++|+.|.+++|... .. ..+. +++|+.
T Consensus 133 ~s~~~l~~L~~L~l~~~~~e~~~is~~~~---~~L~-~ll~~~P~L~~L~L~g~~~l-~l---------~~~~-~~~L~~ 197 (362)
T 2ra8_A 133 ENKEKFAHFEGLFWGDIDFEEQEISWIEQ---VDLS-PVLDAMPLLNNLKIKGTNNL-SI---------GKKP-RPNLKS 197 (362)
T ss_dssp TTHHHHTTCSEEEECCCCTTTCCGGGCBC---CBCH-HHHHTCTTCCEEEEECCBTC-BC---------CSCB-CTTCSE
T ss_pred HhhhhcchhhheeecCcchhhcccccccc---cCHH-HHHhcCCCCcEEEEeCCCCc-ee---------cccc-CCCCcE
Confidence 55778889999988664332221111110 1122 23677888888888776211 11 1122 678888
Q ss_pred EEEeeccCcccC--cc--cccccccEEEEEeccccccCCCCccccceEEEecCCccchhhhhhhHH-Hhhccccceeecc
Q 041360 390 LEIQVRDAQILP--QD--LVLVELQRYKICIGEAWRMWGVTSEISRLVRLHGLENVSTLLENYGMK-MLLKEAEEIHLNE 464 (561)
Q Consensus 390 L~l~~~~~~~~~--~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~-~ll~~L~~L~l~~ 464 (561)
|.+..+.+..-. .. ..+++|+.|+++.+..... +... .......+. ..+|+|+.|++.+
T Consensus 198 L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~--~~~~--------------~~~l~~~l~~~~~p~Lr~L~L~~ 261 (362)
T 2ra8_A 198 LEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYG--FDGD--------------MNVFRPLFSKDRFPNLKWLGIVD 261 (362)
T ss_dssp EEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGT--CCSC--------------GGGTGGGSCTTTCTTCCEEEEES
T ss_pred EEEecCCCChHHHHHHHHccCCCCcEEEEeccccccc--cchh--------------HHHHHHHHhcCCCCCcCEEeCCC
Confidence 888766553211 11 1567777777753221110 0000 000000000 1136777777766
Q ss_pred ccCcccccccccCCCCCCCccEEEEecCCccchhhcccCcccCCcCccccccccccccc
Q 041360 465 LKGVQNAVHELDDGEGFPRLKHLRVESCSEILHIVGSVGRVRRKVFPLLESLSLKKASF 523 (561)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 523 (561)
|.-.......+.....+++|++|+|+. +.+.......-......+++|+.|++.+|.-
T Consensus 262 ~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i 319 (362)
T 2ra8_A 262 AEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYNYL 319 (362)
T ss_dssp CTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBBC
T ss_pred CCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCCcC
Confidence 543221111111023567777777765 3454421000000113567777777776653
No 153
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.82 E-value=1.2e-05 Score=69.90 Aligned_cols=92 Identities=17% Similarity=0.169 Sum_probs=64.5
Q ss_pred ccCCcc-CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCC-CCCC-chhhcCC----CCCcEEEeCCCC-CCC
Q 041360 237 ELPERL-QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVR-FSSL-PSSLGRL----FNLQTLCLGGCR-LKD 308 (561)
Q Consensus 237 ~l~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~-i~~l-p~~i~~L----~~L~~L~l~~~~-l~~ 308 (561)
.+|... .-.+|+.|++++|. ....-... +.++++|+.|+|++|. ++.- -..++.+ ++|++|+|++|. +++
T Consensus 52 ~LP~~~~~~~~L~~LDLs~~~-Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD 129 (176)
T 3e4g_A 52 HLPTGPLDKYKIQAIDATDSC-IMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD 129 (176)
T ss_dssp GSCCCSTTCCCEEEEEEESCC-CCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred cCCcccCCCceEeEEeCcCCC-ccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence 344432 34578899999887 23222333 3789999999999985 5541 2345554 369999999987 887
Q ss_pred --cccccCCCCCcEEEccCC-cCcc
Q 041360 309 --IAIVGQLKKLEILSFRDS-YIEE 330 (561)
Q Consensus 309 --p~~i~~L~~L~~L~l~~~-~~~~ 330 (561)
...+.++++|++|++++| .++.
T Consensus 130 ~Gl~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 130 KGIIALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHHHHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHHHHhcCCCCCEEECCCCCCCCc
Confidence 677888999999999998 4543
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.82 E-value=0.00031 Score=70.64 Aligned_cols=74 Identities=14% Similarity=0.077 Sum_probs=36.6
Q ss_pred ccccceeeccccCcccccccccCCCCCCCccEEEEecCCccchhhcccCcccCCcCc---cccccccccccccccCCCCC
Q 041360 455 KEAEEIHLNELKGVQNAVHELDDGEGFPRLKHLRVESCSEILHIVGSVGRVRRKVFP---LLESLSLKKASFVILHGQKP 531 (561)
Q Consensus 455 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~---~L~~L~l~~c~~~~~~~~~~ 531 (561)
.+|+.+.+.+ +++.++... ..++.+|+.+.|.+ +++.+. ..+|. +|+.+.+-..-..+... .
T Consensus 297 ~~L~~i~l~~--~i~~I~~~a--F~~c~~L~~i~lp~--~v~~I~-------~~aF~~c~~L~~i~lp~~l~~I~~~--a 361 (394)
T 4fs7_A 297 SSLTEVKLLD--SVKFIGEEA--FESCTSLVSIDLPY--LVEEIG-------KRSFRGCTSLSNINFPLSLRKIGAN--A 361 (394)
T ss_dssp TTCCEEEECT--TCCEECTTT--TTTCTTCCEECCCT--TCCEEC-------TTTTTTCTTCCEECCCTTCCEECTT--T
T ss_pred cccccccccc--ccceechhh--hcCCCCCCEEEeCC--cccEEh-------HHhccCCCCCCEEEECccccEehHH--H
Confidence 5666666642 345554322 23456777777642 344443 34443 45554442211144222 3
Q ss_pred CCCCCCCcccCC
Q 041360 532 TAASKGPEREKP 543 (561)
Q Consensus 532 ~~~l~~L~~L~i 543 (561)
+..+++|+.+++
T Consensus 362 F~~C~~L~~i~l 373 (394)
T 4fs7_A 362 FQGCINLKKVEL 373 (394)
T ss_dssp BTTCTTCCEEEE
T ss_pred hhCCCCCCEEEE
Confidence 566677777766
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.81 E-value=1.5e-05 Score=71.02 Aligned_cols=118 Identities=13% Similarity=0.138 Sum_probs=59.5
Q ss_pred HcCCCCccEEEecCC-CCCC-----CchhhcCCCCCcEEEeCCCCCCC--c----ccccCCCCCcEEEccCCcCcccChh
Q 041360 267 FEGTEEVKVLSLTGV-RFSS-----LPSSLGRLFNLQTLCLGGCRLKD--I----AIVGQLKKLEILSFRDSYIEELPHE 334 (561)
Q Consensus 267 ~~~l~~Lr~L~l~~~-~i~~-----lp~~i~~L~~L~~L~l~~~~l~~--p----~~i~~L~~L~~L~l~~~~~~~lp~~ 334 (561)
+...+.|++|+|++| .+.. +...+....+|++|+|++|.+.. . ..+...++|++|++++|.+..- +
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~--g 109 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS--G 109 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH--H
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH--H
Confidence 355566666666666 5543 34445555666666666666543 1 2334445666666666654421 1
Q ss_pred hhccccccccCchhhcCCCCCcEEEc--cCCcccccccCCCcccchHhhcCCCCCcEEEEeeccC
Q 041360 335 IGQLTRLVVIAPNLISKFSQLEELYM--GDSFSQWDKVEGGSNASLAELKGLSKLTTLEIQVRDA 397 (561)
Q Consensus 335 i~~L~~L~~l~~~~i~~l~~L~~L~l--~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 397 (561)
+..+ . ..+...++|++|++ ++|.+.... ..+....+...+.|+.|++++|.+
T Consensus 110 ~~~l------~-~~L~~n~~L~~L~L~~~~N~i~~~g----~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 110 ILAL------V-EALQSNTSLIELRIDNQSQPLGNNV----EMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHH------H-HGGGGCSSCCEEECCCCSSCCCHHH----HHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHH------H-HHHHhCCCceEEEecCCCCCCCHHH----HHHHHHHHHhCCCcCEEeccCCCC
Confidence 1111 0 11444556666666 445432111 112334455556666666666554
No 156
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.72 E-value=2.8e-05 Score=73.02 Aligned_cols=86 Identities=26% Similarity=0.287 Sum_probs=61.4
Q ss_pred cCCCCccEEEecCCCCCCCc---hhhcCCCCCcEEEeCCCCCCCcccccCCC--CCcEEEccCCcCcc-cChhhhccccc
Q 041360 268 EGTEEVKVLSLTGVRFSSLP---SSLGRLFNLQTLCLGGCRLKDIAIVGQLK--KLEILSFRDSYIEE-LPHEIGQLTRL 341 (561)
Q Consensus 268 ~~l~~Lr~L~l~~~~i~~lp---~~i~~L~~L~~L~l~~~~l~~p~~i~~L~--~L~~L~l~~~~~~~-lp~~i~~L~~L 341 (561)
.++++|+.|+|++|.+..++ ..+..+++|++|+|++|.++....+..+. +|++|++++|.+.. +|..-..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y---- 242 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTY---- 242 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHH----
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhH----
Confidence 56889999999999988754 66778999999999999988754455555 89999999997653 3311000
Q ss_pred cccCchhhcCCCCCcEEEc
Q 041360 342 VVIAPNLISKFSQLEELYM 360 (561)
Q Consensus 342 ~~l~~~~i~~l~~L~~L~l 360 (561)
-...+..+++|+.|+-
T Consensus 243 ---~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 243 ---ISAIRERFPKLLRLDG 258 (267)
T ss_dssp ---HHHHHHHCTTCCEESS
T ss_pred ---HHHHHHHCcccCeECC
Confidence 0122567777777773
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.68 E-value=4.4e-05 Score=66.39 Aligned_cols=83 Identities=17% Similarity=0.280 Sum_probs=56.0
Q ss_pred CCccEEEecCCCCCCC-chhhcCCCCCcEEEeCCCC-CCC--cccccCC----CCCcEEEccCC-cCcccChhhhccccc
Q 041360 271 EEVKVLSLTGVRFSSL-PSSLGRLFNLQTLCLGGCR-LKD--IAIVGQL----KKLEILSFRDS-YIEELPHEIGQLTRL 341 (561)
Q Consensus 271 ~~Lr~L~l~~~~i~~l-p~~i~~L~~L~~L~l~~~~-l~~--p~~i~~L----~~L~~L~l~~~-~~~~lp~~i~~L~~L 341 (561)
..|+.||+++|.++.- -..+..+++|++|+|++|. +++ ...+..+ ++|++|++++| +++.- ++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~--Gl------ 132 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK--GI------ 132 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH--HH------
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH--HH------
Confidence 4688888888887652 3456778888888888886 766 5666665 36888888887 34421 11
Q ss_pred cccCchhhcCCCCCcEEEccCCccc
Q 041360 342 VVIAPNLISKFSQLEELYMGDSFSQ 366 (561)
Q Consensus 342 ~~l~~~~i~~l~~L~~L~l~~~~~~ 366 (561)
..+.++++|++|++++|...
T Consensus 133 -----~~L~~~~~L~~L~L~~c~~I 152 (176)
T 3e4g_A 133 -----IALHHFRNLKYLFLSDLPGV 152 (176)
T ss_dssp -----HHGGGCTTCCEEEEESCTTC
T ss_pred -----HHHhcCCCCCEEECCCCCCC
Confidence 11456777777777777544
No 158
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.61 E-value=6e-05 Score=66.97 Aligned_cols=111 Identities=16% Similarity=0.119 Sum_probs=71.1
Q ss_pred CCCCccEEEeecc-CCCCc-----cccHHHHcCCCCccEEEecCCCCCC-----CchhhcCCCCCcEEEeCCCCCCC---
Q 041360 243 QCPNLELFLLFRK-GYGSM-----QISDLFFEGTEEVKVLSLTGVRFSS-----LPSSLGRLFNLQTLCLGGCRLKD--- 308 (561)
Q Consensus 243 ~~~~L~~L~l~~~-~~~~~-----~~~~~~~~~l~~Lr~L~l~~~~i~~-----lp~~i~~L~~L~~L~l~~~~l~~--- 308 (561)
..+.|++|+++++ . +. .+... +...++|++|+|++|.+.. +...+....+|++|+|++|.+..
T Consensus 34 ~~~~L~~L~L~~n~~--i~~~g~~~l~~~-L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 34 NDPDLEEVNLNNIMN--IPVPTLKACAEA-LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp TCTTCCEEECTTCTT--CCHHHHHHHHHH-HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred cCCCCCEEEecCCCC--CCHHHHHHHHHH-HHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 4566777777776 4 22 12222 3567788888888888764 45556666788888888888765
Q ss_pred ---cccccCCCCCcEEEc--cCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcc
Q 041360 309 ---IAIVGQLKKLEILSF--RDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFS 365 (561)
Q Consensus 309 ---p~~i~~L~~L~~L~l--~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~ 365 (561)
...+...++|++|++ ++|.+..- +...+. ..+...++|++|++++|..
T Consensus 111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~--g~~~l~-------~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 111 LALVEALQSNTSLIELRIDNQSQPLGNN--VEMEIA-------NMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHGGGGCSSCCEEECCCCSSCCCHH--HHHHHH-------HHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHhCCCceEEEecCCCCCCCHH--HHHHHH-------HHHHhCCCcCEEeccCCCC
Confidence 245666778888888 66765432 111111 1255667788888887754
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.54 E-value=7.2e-05 Score=70.16 Aligned_cols=78 Identities=27% Similarity=0.325 Sum_probs=61.4
Q ss_pred CCCCccEEEeeccCCCCccccH--HHHcCCCCccEEEecCCCCCCCchhhcCCC--CCcEEEeCCCCCCC--c-------
Q 041360 243 QCPNLELFLLFRKGYGSMQISD--LFFEGTEEVKVLSLTGVRFSSLPSSLGRLF--NLQTLCLGGCRLKD--I------- 309 (561)
Q Consensus 243 ~~~~L~~L~l~~~~~~~~~~~~--~~~~~l~~Lr~L~l~~~~i~~lp~~i~~L~--~L~~L~l~~~~l~~--p------- 309 (561)
.+++|++|++++|. +..++. ..++.+++|++|+|++|.+..+ ..+..+. +|++|+|++|.+.. |
T Consensus 168 ~l~~L~~L~Ls~N~--l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 168 NIPELLSLNLSNNR--LYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HCTTCCEEECTTSC--CCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hCCCCCEEECCCCC--CCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 58899999999997 555432 3347899999999999999887 3455555 99999999999764 2
Q ss_pred ccccCCCCCcEEEc
Q 041360 310 AIVGQLKKLEILSF 323 (561)
Q Consensus 310 ~~i~~L~~L~~L~l 323 (561)
..+..+++|+.||=
T Consensus 245 ~il~~~P~L~~LDg 258 (267)
T 3rw6_A 245 AIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHCTTCCEESS
T ss_pred HHHHHCcccCeECC
Confidence 24778899998864
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=97.25 E-value=0.002 Score=64.54 Aligned_cols=54 Identities=15% Similarity=0.097 Sum_probs=29.5
Q ss_pred CCCCCccEEEEecCCccchhhcccCcccCCcC---ccccccccccccccccCCCCCCCCCCCCcccCC
Q 041360 479 EGFPRLKHLRVESCSEILHIVGSVGRVRRKVF---PLLESLSLKKASFVILHGQKPTAASKGPEREKP 543 (561)
Q Consensus 479 ~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~---~~L~~L~l~~c~~~~~~~~~~~~~l~~L~~L~i 543 (561)
..+.+|+.+.+.+ +++.++ ..+| ++|+.+.+-+--..+.. ..+..+++|+.+.+
T Consensus 294 ~~~~~L~~i~l~~--~i~~I~-------~~aF~~c~~L~~i~lp~~v~~I~~--~aF~~c~~L~~i~l 350 (394)
T 4fs7_A 294 YGCSSLTEVKLLD--SVKFIG-------EEAFESCTSLVSIDLPYLVEEIGK--RSFRGCTSLSNINF 350 (394)
T ss_dssp TTCTTCCEEEECT--TCCEEC-------TTTTTTCTTCCEECCCTTCCEECT--TTTTTCTTCCEECC
T ss_pred ccccccccccccc--ccceec-------hhhhcCCCCCCEEEeCCcccEEhH--HhccCCCCCCEEEE
Confidence 3567888888754 455543 3445 45666655321114432 23566677777766
No 161
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.83 E-value=0.019 Score=56.06 Aligned_cols=148 Identities=16% Similarity=0.174 Sum_probs=88.4
Q ss_pred ceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHcCCChHHHHHHHHHHcC-CCHHHH-HHHHHHHhhCCCCCC
Q 041360 19 KNFLIEVLSKEEALQLFENILGDSTKTSTIQPIADEIVKRCGGLPVAVTTVANALKS-KSLDIW-KDALSQLRSSNPREI 96 (561)
Q Consensus 19 ~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~-~~~~~w-~~~~~~l~~~~~~~~ 96 (561)
..+++.+|+.+|+.+++.+.........+ .+.+..+++.++|.|+++..++..+.. .+...+ ..+.+.
T Consensus 196 ~~i~l~pl~~~e~~~~l~~~~~~~~~~~~-~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~--------- 265 (350)
T 2qen_A 196 GEVLVKPFDKDTSVEFLKRGFREVNLDVP-ENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEV--------- 265 (350)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCCCC-HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHH---------
T ss_pred ceeeCCCCCHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHHHHHHHHH---------
Confidence 48999999999999999886532111111 467889999999999999999876532 222222 111111
Q ss_pred CCchhhHHHHHHHHHHhc---CChHHHHHHHhhcccCCCcccCHHHHHHHHhhcCcccccccHHHHHHHHHHHHHHHHHc
Q 041360 97 DGMDKNVYTSIELSYNLL---ASKEAKSLFRLCGLYNEGHAIQVASLLRYGMGWGLFKNVYTLEEARSRVHRLIDNLKSS 173 (561)
Q Consensus 97 ~~~~~~~~~~l~~sy~~L---~~~~~k~cfl~~s~fp~~~~~~~~~l~~~w~a~g~~~~~~~~~~~~~~~~~~i~~L~~~ 173 (561)
+...+.-.+..+ ++. .+..+..+|. + .++...+.....+..- ..+.. ....+++.|.+.
T Consensus 266 ------~~~~~~~~l~~l~~~~~~-~~~~l~~la~---g-~~~~~~l~~~~~~~~~---~~~~~----~~~~~l~~L~~~ 327 (350)
T 2qen_A 266 ------AKGLIMGELEELRRRSPR-YVDILRAIAL---G-YNRWSLIRDYLAVKGT---KIPEP----RLYALLENLKKM 327 (350)
T ss_dssp ------HHHHHHHHHHHHHHHCHH-HHHHHHHHHT---T-CCSHHHHHHHHHHTTC---CCCHH----HHHHHHHHHHHT
T ss_pred ------HHHHHHHHHHHHHhCChh-HHHHHHHHHh---C-CCCHHHHHHHHHHHhC---CCCHH----HHHHHHHHHHhC
Confidence 111111122222 554 8888888887 2 2455555554322110 01122 234577888889
Q ss_pred CcccccCCCCceeh-hHHHHHHHH
Q 041360 174 CLLLDGDGKDEVKM-HDVIHVVAV 196 (561)
Q Consensus 174 sll~~~~~~~~~~m-h~lv~~~~~ 196 (561)
+++... .+.|.+ |++++++.+
T Consensus 328 gli~~~--~~~y~~~~p~~~~~~~ 349 (350)
T 2qen_A 328 NWIVEE--DNTYKIADPVVATVLR 349 (350)
T ss_dssp TSEEEE--TTEEEESSHHHHHHHT
T ss_pred CCEEec--CCEEEEecHHHHHHHc
Confidence 999765 245555 778887653
No 162
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.60 E-value=0.024 Score=55.54 Aligned_cols=147 Identities=14% Similarity=0.175 Sum_probs=86.0
Q ss_pred ceEecCCCCHHHHHHHHHHHhCC-CCCCCCchHHHHHHHHHcCCChHHHHHHHHHHcC-CCHHHHH-HHHHHHhhCCCCC
Q 041360 19 KNFLIEVLSKEEALQLFENILGD-STKTSTIQPIADEIVKRCGGLPVAVTTVANALKS-KSLDIWK-DALSQLRSSNPRE 95 (561)
Q Consensus 19 ~~~~l~~L~~~~a~~Lf~~~~~~-~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~~-~~~~~w~-~~~~~l~~~~~~~ 95 (561)
..+++.+|+.+|+.+++.+.+.. ....++ ...|++.++|.|+++..++..+.. .+...|- .+.+..
T Consensus 202 ~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~----~~~i~~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~------- 270 (357)
T 2fna_A 202 STVELKPFSREEAIEFLRRGFQEADIDFKD----YEVVYEKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYA------- 270 (357)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HHHHHHHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHH-------
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCCCCc----HHHHHHHhCCCHHHHHHHHHHHccccchHHHHHHHHHHH-------
Confidence 58999999999999999986531 111122 288999999999999999987652 2333331 111111
Q ss_pred CCCchhhHHHHHH-HHHH--hcCChHHHHHHHhhcccCCCcccCHHHHHHHHh-hcCcccccccHHHHHHHHHHHHHHHH
Q 041360 96 IDGMDKNVYTSIE-LSYN--LLASKEAKSLFRLCGLYNEGHAIQVASLLRYGM-GWGLFKNVYTLEEARSRVHRLIDNLK 171 (561)
Q Consensus 96 ~~~~~~~~~~~l~-~sy~--~L~~~~~k~cfl~~s~fp~~~~~~~~~l~~~w~-a~g~~~~~~~~~~~~~~~~~~i~~L~ 171 (561)
...+...+. +.++ .+++. .+..+..+|. + . +...+..... ..|. ..+. .....+++.|+
T Consensus 271 ----~~~~~~~l~~~~~~~~~l~~~-~~~~l~~la~---g-~-~~~~l~~~~~~~~g~---~~~~----~~~~~~L~~L~ 333 (357)
T 2fna_A 271 ----KKLILKEFENFLHGREIARKR-YLNIMRTLSK---C-G-KWSDVKRALELEEGI---EISD----SEIYNYLTQLT 333 (357)
T ss_dssp ----HHHHHHHHHHHHTTCGGGHHH-HHHHHHHHTT---C-B-CHHHHHHHHHHHHCS---CCCH----HHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhhccccccHH-HHHHHHHHHc---C-C-CHHHHHHHHHHhcCC---CCCH----HHHHHHHHHHH
Confidence 111111221 1111 56775 8888888887 2 1 4444443211 1121 0011 22345778888
Q ss_pred HcCcccccCCCCceeh-hHHHHHHH
Q 041360 172 SSCLLLDGDGKDEVKM-HDVIHVVA 195 (561)
Q Consensus 172 ~~sll~~~~~~~~~~m-h~lv~~~~ 195 (561)
+.+++...+ +.|.+ |++++++.
T Consensus 334 ~~gli~~~~--~~y~f~~~~~~~~l 356 (357)
T 2fna_A 334 KHSWIIKEG--EKYCPSEPLISLAF 356 (357)
T ss_dssp HTTSEEESS--SCEEESSHHHHHHT
T ss_pred hCCCEEecC--CEEEecCHHHHHhh
Confidence 999997653 45664 78888764
No 163
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.12 E-value=0.048 Score=54.41 Aligned_cols=74 Identities=8% Similarity=0.102 Sum_probs=34.2
Q ss_pred ccEEEeeccCCCCccccHHHHcCCCCccEEEecCCC---CCCCc-hhhcCCCCCcEEEeCCCCCCC--cccccCCCCCcE
Q 041360 247 LELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVR---FSSLP-SSLGRLFNLQTLCLGGCRLKD--IAIVGQLKKLEI 320 (561)
Q Consensus 247 L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~---i~~lp-~~i~~L~~L~~L~l~~~~l~~--p~~i~~L~~L~~ 320 (561)
|+++.+... +..+....|.++.+|+.+.+..+. ++.+. ..+..+.+|+.+.+..+ ++. ...+..+.+|+.
T Consensus 66 L~sI~iP~s---vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~ 141 (394)
T 4gt6_A 66 LTSVQIPDT---VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDT 141 (394)
T ss_dssp CCEEEECTT---CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCE
T ss_pred CEEEEECCC---eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccc
Confidence 555555432 445555555666666666665432 33332 23444444444443322 222 133444555555
Q ss_pred EEcc
Q 041360 321 LSFR 324 (561)
Q Consensus 321 L~l~ 324 (561)
+.+.
T Consensus 142 i~lp 145 (394)
T 4gt6_A 142 VTIP 145 (394)
T ss_dssp EECC
T ss_pred cccc
Confidence 5553
No 164
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=95.98 E-value=0.18 Score=49.85 Aligned_cols=53 Identities=9% Similarity=0.110 Sum_probs=26.6
Q ss_pred CCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCch-hhcCCCCCcEEEe
Q 041360 244 CPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLPS-SLGRLFNLQTLCL 301 (561)
Q Consensus 244 ~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp~-~i~~L~~L~~L~l 301 (561)
..+|+.+.+... +..++...|.++.+|+.+.+..+ ++.++. .+... +|+.+.+
T Consensus 45 ~~~i~~v~ip~~---vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~ 98 (379)
T 4h09_A 45 RDRISEVRVNSG---ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTG 98 (379)
T ss_dssp GGGCSEEEECTT---EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEE
T ss_pred ccCCEEEEeCCC---ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEEC
Confidence 445566555432 45555555666666666666432 444432 23332 4444444
No 165
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=95.81 E-value=0.13 Score=51.17 Aligned_cols=78 Identities=13% Similarity=0.274 Sum_probs=42.4
Q ss_pred CCceEEEccCCC---ccccCCcc--CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCc-hhhcCCCCC
Q 041360 223 KGPIAISLPHRD---IQELPERL--QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLP-SSLGRLFNL 296 (561)
Q Consensus 223 ~~l~~l~l~~~~---~~~l~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~L~~L 296 (561)
.+++.+.+..+. +..+.... .+.+|+.+.+... +..++...|..+.+|+.+.+..+ +..++ ..+..+.+|
T Consensus 87 ~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~---~~~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L 162 (394)
T 4gt6_A 87 TSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS---VTEIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSL 162 (394)
T ss_dssp TTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT---CSEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTC
T ss_pred ccCceEeecCCCCCeeeEechhhchhcccceeeccCCc---cceehhhhhhhhcccccccccce-eeeecccceeccccc
Confidence 455666665432 33343332 5666666655432 44566666677777777777532 33332 345556666
Q ss_pred cEEEeCCC
Q 041360 297 QTLCLGGC 304 (561)
Q Consensus 297 ~~L~l~~~ 304 (561)
+.+.+..+
T Consensus 163 ~~i~~~~~ 170 (394)
T 4gt6_A 163 HTVTLPDS 170 (394)
T ss_dssp CEEECCTT
T ss_pred ccccccce
Confidence 66666543
No 166
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.68 E-value=0.053 Score=44.47 Aligned_cols=50 Identities=18% Similarity=0.294 Sum_probs=23.3
Q ss_pred EEEecCCCCC--CCchhhcCCCCCcEEEeCCCCCCC-c-ccccCCCCCcEEEccCC
Q 041360 275 VLSLTGVRFS--SLPSSLGRLFNLQTLCLGGCRLKD-I-AIVGQLKKLEILSFRDS 326 (561)
Q Consensus 275 ~L~l~~~~i~--~lp~~i~~L~~L~~L~l~~~~l~~-p-~~i~~L~~L~~L~l~~~ 326 (561)
+++-++++++ .+|..+. .+|++|+|++|.|+. + ..+..+++|++|+|.+|
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 4444444444 4443221 234555555555444 2 33444555555555554
No 167
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.63 E-value=0.17 Score=50.61 Aligned_cols=138 Identities=14% Similarity=0.090 Sum_probs=78.8
Q ss_pred eEecCCCCHHHHHHHHHHHhC---CCCCCCCchHHHHHHHHHcC------CChHHHHHHHHHH-c-----CC---CHHHH
Q 041360 20 NFLIEVLSKEEALQLFENILG---DSTKTSTIQPIADEIVKRCG------GLPVAVTTVANAL-K-----SK---SLDIW 81 (561)
Q Consensus 20 ~~~l~~L~~~~a~~Lf~~~~~---~~~~~~~~~~~~~~i~~~c~------glPLai~~~g~~L-~-----~~---~~~~w 81 (561)
.+++.+++.++++++|...+. ... .--.+.+..+++.++ |.|..+..+.... . .. +.+.+
T Consensus 209 ~i~l~~l~~~e~~~ll~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v 286 (412)
T 1w5s_A 209 KLHLPAYKSRELYTILEQRAELGLRDT--VWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLV 286 (412)
T ss_dssp EEECCCCCHHHHHHHHHHHHHHHBCTT--SCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHH
T ss_pred eeeeCCCCHHHHHHHHHHHHHhcCCCC--CCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHH
Confidence 399999999999999987653 211 112567889999999 9997655544321 1 11 33444
Q ss_pred HHHHHHHhhCCCCCCCCchhhHHHHHHHHHHhcCChHHHHHHHhhcccC--CCcccCHHHHHHHHh--h---cCcccccc
Q 041360 82 KDALSQLRSSNPREIDGMDKNVYTSIELSYNLLASKEAKSLFRLCGLYN--EGHAIQVASLLRYGM--G---WGLFKNVY 154 (561)
Q Consensus 82 ~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s~fp--~~~~~~~~~l~~~w~--a---~g~~~~~~ 154 (561)
..+...... ...+.-.+..||.+ .+.++..++.+. .+..++...+...|. + .|. . ..
T Consensus 287 ~~~~~~~~~-------------~~~~~~~l~~l~~~-~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~ 350 (412)
T 1w5s_A 287 RKAVSENEA-------------ASIQTHELEALSIH-ELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNV-K-PR 350 (412)
T ss_dssp HHHHHHC-------------------CCSSSSSCHH-HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCC-C-CC
T ss_pred HHHHHHHhc-------------cchHHHHHHcCCHH-HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCC-C-CC
Confidence 444433210 12223345678876 788888788653 233555555544332 1 111 0 00
Q ss_pred cHHHHHHHHHHHHHHHHHcCccccc
Q 041360 155 TLEEARSRVHRLIDNLKSSCLLLDG 179 (561)
Q Consensus 155 ~~~~~~~~~~~~i~~L~~~sll~~~ 179 (561)
+ ...+.+++++|.+.+++...
T Consensus 351 ~----~~~~~~~l~~L~~~gli~~~ 371 (412)
T 1w5s_A 351 G----YTQYHIYLKHLTSLGLVDAK 371 (412)
T ss_dssp C----HHHHHHHHHHHHHTTSEEEE
T ss_pred C----HHHHHHHHHHHHhCCCEEee
Confidence 1 12344578889999999653
No 168
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=94.53 E-value=0.043 Score=48.47 Aligned_cols=119 Identities=11% Similarity=0.168 Sum_probs=69.4
Q ss_pred HcCCCCccEEEecCC-CCCC-----CchhhcCCCCCcEEEeCCCCCCC--c----ccccCCCCCcEEEccCCcCcccChh
Q 041360 267 FEGTEEVKVLSLTGV-RFSS-----LPSSLGRLFNLQTLCLGGCRLKD--I----AIVGQLKKLEILSFRDSYIEELPHE 334 (561)
Q Consensus 267 ~~~l~~Lr~L~l~~~-~i~~-----lp~~i~~L~~L~~L~l~~~~l~~--p----~~i~~L~~L~~L~l~~~~~~~lp~~ 334 (561)
...-..|+.|+|+++ .|.. +-..+..-..|+.|+|++|.+.. . ..+..=..|++|++++|.|.. .+
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~--~G 114 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP--EL 114 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH--HH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH--HH
Confidence 355567888888775 5543 44556666778888888887764 1 334455678888888887652 22
Q ss_pred hhccccccccCchhhcCCCCCcEEEccCCcc-cccccCCCcccchHhhcCCCCCcEEEEeecc
Q 041360 335 IGQLTRLVVIAPNLISKFSQLEELYMGDSFS-QWDKVEGGSNASLAELKGLSKLTTLEIQVRD 396 (561)
Q Consensus 335 i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~-~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 396 (561)
...+. ..+..-+.|++|+++++.. ..... ...+....+..-+.|+.|+++++.
T Consensus 115 a~ala-------~aL~~N~tL~~L~L~n~~~~~ig~~--g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 115 LARLL-------RSTLVTQSIVEFKADNQRQSVLGNQ--VEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHH-------HHTTTTCCCSEEECCCCSSCCCCHH--HHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHH-------HHHhhCCceeEEECCCCcCcCcCHH--HHHHHHHHHHhCCCcCeEeccCCC
Confidence 21111 1244455688888875422 11110 012344566666778888877654
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.05 E-value=0.069 Score=43.78 Aligned_cols=53 Identities=30% Similarity=0.368 Sum_probs=33.4
Q ss_pred EEEeeccCCCCc--cccHHHHcCCCCccEEEecCCCCCCCch-hhcCCCCCcEEEeCCCCC
Q 041360 249 LFLLFRKGYGSM--QISDLFFEGTEEVKVLSLTGVRFSSLPS-SLGRLFNLQTLCLGGCRL 306 (561)
Q Consensus 249 ~L~l~~~~~~~~--~~~~~~~~~l~~Lr~L~l~~~~i~~lp~-~i~~L~~L~~L~l~~~~l 306 (561)
.++.++.. +. .+|..+ -.+|++|+|++|.|+.+|. .+..+.+|++|+|++|.+
T Consensus 12 ~v~Cs~~~--L~~~~vP~~l---p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRG--LTWASLPTAF---PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSC--CCTTTSCSCC---CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCC--CccccCCCCC---CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 34444444 44 566432 2457778888888877765 456677788888877763
No 170
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=92.14 E-value=0.56 Score=46.17 Aligned_cols=124 Identities=17% Similarity=0.195 Sum_probs=69.1
Q ss_pred CCCCccEEEeeccCCCCccccHHHHcCCCCccEEEecCCCCCCCc-hhhcCCCCCcEEEeCCCCCCC--cccccCCCCCc
Q 041360 243 QCPNLELFLLFRKGYGSMQISDLFFEGTEEVKVLSLTGVRFSSLP-SSLGRLFNLQTLCLGGCRLKD--IAIVGQLKKLE 319 (561)
Q Consensus 243 ~~~~L~~L~l~~~~~~~~~~~~~~~~~l~~Lr~L~l~~~~i~~lp-~~i~~L~~L~~L~l~~~~l~~--p~~i~~L~~L~ 319 (561)
.+.+|+.+.+... +..+....|.++..|+.+.+..+ ++.+. ..+..+.+|+.+.+... +.. ...+..+.+|+
T Consensus 215 ~~~~l~~i~~~~~---~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 215 YGKNLKKITITSG---VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TCSSCSEEECCTT---CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred cccccceeeeccc---eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 4566666666443 34455555667777777777554 44443 34556667777777543 333 25566677777
Q ss_pred EEEccCCcCcccChhhhccccccccCchhhcCCCCCcEEEccCCcccccccCCCcccchHhhcCCCCCcEEEEe
Q 041360 320 ILSFRDSYIEELPHEIGQLTRLVVIAPNLISKFSQLEELYMGDSFSQWDKVEGGSNASLAELKGLSKLTTLEIQ 393 (561)
Q Consensus 320 ~L~l~~~~~~~lp~~i~~L~~L~~l~~~~i~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~L~~L~l~ 393 (561)
.+.+.++.+..++ ...+.++.+|+.+.+..+.. .+. ..++.++++|+.+.+.
T Consensus 290 ~i~l~~~~i~~I~-------------~~aF~~c~~L~~i~lp~~l~--~I~-------~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 290 KVVMDNSAIETLE-------------PRVFMDCVKLSSVTLPTALK--TIQ-------VYAFKNCKALSTISYP 341 (379)
T ss_dssp EEEECCTTCCEEC-------------TTTTTTCTTCCEEECCTTCC--EEC-------TTTTTTCTTCCCCCCC
T ss_pred cccccccccceeh-------------hhhhcCCCCCCEEEcCcccc--EEH-------HHHhhCCCCCCEEEEC
Confidence 7777665554443 23355666666666654321 111 0345556666665553
No 171
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=89.67 E-value=0.55 Score=42.47 Aligned_cols=72 Identities=13% Similarity=0.181 Sum_probs=48.7
Q ss_pred CEEeeccchhh-hcccCCcceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHcCCChHHHHHHHHHH
Q 041360 1 MILTSRNRDLL-ERDMNSQKNFLIEVLSKEEALQLFENILGDSTKTSTIQPIADEIVKRCGGLPVAVTTVANAL 73 (561)
Q Consensus 1 IlvTTR~~~va-~~~~~~~~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L 73 (561)
||+||+..... .....-...+++++++.++..+++.+.+......- -.+..+.|++.|+|.|..+..+...+
T Consensus 159 ~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~G~~~~~~~~~~~~ 231 (250)
T 1njg_A 159 FLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAH-EPRALQLLARAAEGSLRDALSLTDQA 231 (250)
T ss_dssp EEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCB-CHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred EEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 35666554322 11112236899999999999999998875222111 14678899999999999988776544
No 172
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=88.20 E-value=1.2 Score=42.68 Aligned_cols=54 Identities=17% Similarity=-0.049 Sum_probs=41.7
Q ss_pred ceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHcCCChHHHHHHHHHH
Q 041360 19 KNFLIEVLSKEEALQLFENILGDSTKTSTIQPIADEIVKRCGGLPVAVTTVANAL 73 (561)
Q Consensus 19 ~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L 73 (561)
.++.+.+++.+|..+++.+.+......- -.+....+++.++|.|-.+..+...+
T Consensus 161 ~~i~l~~~~~~e~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~G~~r~l~~~l~~~ 214 (324)
T 1hqc_A 161 IVEHLEYYTPEELAQGVMRDARLLGVRI-TEEAALEIGRRSRGTMRVAKRLFRRV 214 (324)
T ss_dssp CEEECCCCCHHHHHHHHHHHHHTTTCCC-CHHHHHHHHHHSCSCHHHHHHHHHHH
T ss_pred EEEecCCCCHHHHHHHHHHHHHhcCCCC-CHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 5899999999999999998875322211 25778899999999998887766554
No 173
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=86.63 E-value=0.61 Score=41.02 Aligned_cols=91 Identities=11% Similarity=0.038 Sum_probs=51.6
Q ss_pred cCCCCccEEEecCCCCCC-----CchhhcCCCCCcEEEeCCCCCCC--c----ccccCCCCCcEEEccCCcCcccChhhh
Q 041360 268 EGTEEVKVLSLTGVRFSS-----LPSSLGRLFNLQTLCLGGCRLKD--I----AIVGQLKKLEILSFRDSYIEELPHEIG 336 (561)
Q Consensus 268 ~~l~~Lr~L~l~~~~i~~-----lp~~i~~L~~L~~L~l~~~~l~~--p----~~i~~L~~L~~L~l~~~~~~~lp~~i~ 336 (561)
..-..|+.|+|++|.+.. +-..+..-..|++|+|++|.|.. . ..+..=..|++|+++++....+.....
T Consensus 67 ~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~ 146 (197)
T 1pgv_A 67 CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVE 146 (197)
T ss_dssp TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHH
T ss_pred hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHH
Confidence 455677777777777653 44455555678888888877765 1 345555568888887553322221110
Q ss_pred ccccccccCchhhcCCCCCcEEEccCCc
Q 041360 337 QLTRLVVIAPNLISKFSQLEELYMGDSF 364 (561)
Q Consensus 337 ~L~~L~~l~~~~i~~l~~L~~L~l~~~~ 364 (561)
. .+. ..+..-+.|.+|+++.+.
T Consensus 147 ~-----~ia-~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 147 M-----DMM-MAIEENESLLRVGISFAS 168 (197)
T ss_dssp H-----HHH-HHHHHCSSCCEEECCCCC
T ss_pred H-----HHH-HHHHhCCCcCeEeccCCC
Confidence 0 000 124455667777776553
No 174
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=82.52 E-value=18 Score=35.02 Aligned_cols=139 Identities=12% Similarity=0.058 Sum_probs=79.2
Q ss_pred ceEecCCCCHHHHHHHHHHHhCC-CCCCCCchHHHHHHHHHcC---CChH-HHHHHHHHHc-----C---CCHHHHHHHH
Q 041360 19 KNFLIEVLSKEEALQLFENILGD-STKTSTIQPIADEIVKRCG---GLPV-AVTTVANALK-----S---KSLDIWKDAL 85 (561)
Q Consensus 19 ~~~~l~~L~~~~a~~Lf~~~~~~-~~~~~~~~~~~~~i~~~c~---glPL-ai~~~g~~L~-----~---~~~~~w~~~~ 85 (561)
..+.+++++.++..+++.+.+.. .....--.++.+.++++++ |.|- |+..+..+.. + .+.+.+..++
T Consensus 194 ~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~ 273 (387)
T 2v1u_A 194 VELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSAR 273 (387)
T ss_dssp EECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHH
T ss_pred eEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Confidence 58999999999999999988631 0011111356777888888 9993 3333332221 1 1667777776
Q ss_pred HHHhhCCCCCCCCchhhHHHHHHHHHHhcCChHHHHHHHhhc-ccCCCcccCHHHHHHHHh----hcCcccccccHHHHH
Q 041360 86 SQLRSSNPREIDGMDKNVYTSIELSYNLLASKEAKSLFRLCG-LYNEGHAIQVASLLRYGM----GWGLFKNVYTLEEAR 160 (561)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s-~fp~~~~~~~~~l~~~w~----a~g~~~~~~~~~~~~ 160 (561)
+... ...+.-++..++.+ .+..+...+ .+.....+....+.+.+. ..|. .. . +.
T Consensus 274 ~~~~--------------~~~~~~~~~~l~~~-~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~----~~ 332 (387)
T 2v1u_A 274 AEIE--------------RDRVSEVVRTLPLH-AKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLGL-EH-V----TL 332 (387)
T ss_dssp HHHH--------------HHHHHHHHHSSCHH-HHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTTC-CC-C----CH
T ss_pred HHHh--------------hchHHHHHHcCCHH-HHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCC-CC-C----CH
Confidence 6542 22455678889875 555554444 332222455554444332 1221 10 0 12
Q ss_pred HHHHHHHHHHHHcCcccc
Q 041360 161 SRVHRLIDNLKSSCLLLD 178 (561)
Q Consensus 161 ~~~~~~i~~L~~~sll~~ 178 (561)
..+.++++.|...++++.
T Consensus 333 ~~~~~~l~~L~~~gli~~ 350 (387)
T 2v1u_A 333 RRVSGIISELDMLGIVKS 350 (387)
T ss_dssp HHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHhCCCeEE
Confidence 345567888888998864
No 175
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=78.16 E-value=12 Score=36.35 Aligned_cols=137 Identities=12% Similarity=0.005 Sum_probs=77.7
Q ss_pred eEecCCCCHHHHHHHHHHHhC-CCCCCCCchHHHHHHHHHcC---CChH-HHHHHHHHH--c----CCCHHHHHHHHHHH
Q 041360 20 NFLIEVLSKEEALQLFENILG-DSTKTSTIQPIADEIVKRCG---GLPV-AVTTVANAL--K----SKSLDIWKDALSQL 88 (561)
Q Consensus 20 ~~~l~~L~~~~a~~Lf~~~~~-~~~~~~~~~~~~~~i~~~c~---glPL-ai~~~g~~L--~----~~~~~~w~~~~~~l 88 (561)
.+++++++.++..++|.+.+. ......--.+..+.+++.++ |.|- |+..+-.+. + ..+.+.+..+++..
T Consensus 191 ~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 191 SVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp EEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHH
T ss_pred eEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 899999999999999999863 11111111466778888888 8776 444433332 1 22777787777664
Q ss_pred hhCCCCCCCCchhhHHHHHHHHHHhcCChHHHHHHHhhcccCCCcccCHHHHHHHHhhcCcccccccHHHHHHHHHHHHH
Q 041360 89 RSSNPREIDGMDKNVYTSIELSYNLLASKEAKSLFRLCGLYNEGHAIQVASLLRYGMGWGLFKNVYTLEEARSRVHRLID 168 (561)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~~~~~~l~~~w~a~g~~~~~~~~~~~~~~~~~~i~ 168 (561)
. ...+..+++.|+.+ .|..+..++....+-.+. +.....-...|. . .. ....+.++++
T Consensus 271 ~--------------~~~~~~~~~~l~~~-~~~~l~al~~~~~~~~~~-~~~~~~~~~~g~-~-~~----~~~~~~~~l~ 328 (384)
T 2qby_B 271 E--------------QERLIEAVKALPFH-YKLALRSLIESEDVMSAH-KMYTDLCNKFKQ-K-PL----SYRRFSDIIS 328 (384)
T ss_dssp H--------------HHHHHHHHHSSCHH-HHHHHHHHHTCCBHHHHH-HHHHHHHHHTTC-C-CC----CHHHHHHHHH
T ss_pred h--------------cchHHHHHHcCCHH-HHHHHHHHHHhcccChHH-HHHHHHHHHcCC-C-CC----CHHHHHHHHH
Confidence 2 23466678889875 555555555411100111 111111112221 1 01 1234556788
Q ss_pred HHHHcCcccc
Q 041360 169 NLKSSCLLLD 178 (561)
Q Consensus 169 ~L~~~sll~~ 178 (561)
.|.+.++++.
T Consensus 329 ~L~~~gli~~ 338 (384)
T 2qby_B 329 ELDMFGIVKI 338 (384)
T ss_dssp HHHHTTSEEE
T ss_pred HHHhCCCEEE
Confidence 8999999975
No 176
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=75.52 E-value=21 Score=34.43 Aligned_cols=139 Identities=9% Similarity=0.014 Sum_probs=76.4
Q ss_pred ceEecCCCCHHHHHHHHHHHhCC-CCCCCCchHHHHHHHHHcC---CChHHH-HHHHHHHc-----C---CCHHHHHHHH
Q 041360 19 KNFLIEVLSKEEALQLFENILGD-STKTSTIQPIADEIVKRCG---GLPVAV-TTVANALK-----S---KSLDIWKDAL 85 (561)
Q Consensus 19 ~~~~l~~L~~~~a~~Lf~~~~~~-~~~~~~~~~~~~~i~~~c~---glPLai-~~~g~~L~-----~---~~~~~w~~~~ 85 (561)
..+++++++.++..+++.+.+.. .....-..++.+.+++.++ |.|..+ ..+..... + .+.+.++.++
T Consensus 190 ~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~ 269 (386)
T 2qby_A 190 EEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAK 269 (386)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHH
T ss_pred eeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHH
Confidence 58999999999999999987531 1111122567778888887 988844 33332221 1 1556666665
Q ss_pred HHHhhCCCCCCCCchhhHHHHHHHHHHhcCChHHHHHHHhhcccCC-C-cccCHHHHHHHHh----hcCcccccccHHHH
Q 041360 86 SQLRSSNPREIDGMDKNVYTSIELSYNLLASKEAKSLFRLCGLYNE-G-HAIQVASLLRYGM----GWGLFKNVYTLEEA 159 (561)
Q Consensus 86 ~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s~fp~-~-~~~~~~~l~~~w~----a~g~~~~~~~~~~~ 159 (561)
+... ...+.-++..++.+ .+..+..++...+ + ..+....+.+.+. ..|. .. . .
T Consensus 270 ~~~~--------------~~~~~~~~~~l~~~-~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~-~~-~----~ 328 (386)
T 2qby_A 270 EEIE--------------RDRVRDIILTLPFH-SKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGV-EA-V----T 328 (386)
T ss_dssp HHHH--------------HHHHHHHHHTSCHH-HHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTC-CC-C----C
T ss_pred HHHh--------------hchHHHHHHcCCHH-HHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCC-CC-C----C
Confidence 5531 23455667788875 5555555553211 1 1233433322221 1111 00 0 1
Q ss_pred HHHHHHHHHHHHHcCcccc
Q 041360 160 RSRVHRLIDNLKSSCLLLD 178 (561)
Q Consensus 160 ~~~~~~~i~~L~~~sll~~ 178 (561)
...+..+++.|.+.++++.
T Consensus 329 ~~~~~~~l~~L~~~gli~~ 347 (386)
T 2qby_A 329 QRRVSDIINELDMVGILTA 347 (386)
T ss_dssp HHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHHHhCCCEEE
Confidence 1334557788888899864
No 177
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=68.65 E-value=58 Score=31.27 Aligned_cols=139 Identities=9% Similarity=-0.015 Sum_probs=78.1
Q ss_pred ceEecCCCCHHHHHHHHHHHhCC-CCCCCCchHHHHHHHHHc---------CCChHHHHHHH-HHHc-----CC---CHH
Q 041360 19 KNFLIEVLSKEEALQLFENILGD-STKTSTIQPIADEIVKRC---------GGLPVAVTTVA-NALK-----SK---SLD 79 (561)
Q Consensus 19 ~~~~l~~L~~~~a~~Lf~~~~~~-~~~~~~~~~~~~~i~~~c---------~glPLai~~~g-~~L~-----~~---~~~ 79 (561)
..+++.+++.++..+++.+.+.. .....--.+....+++.+ +|.|-.+..+. .+.. +. +.+
T Consensus 186 ~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~ 265 (389)
T 1fnn_A 186 YVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPE 265 (389)
T ss_dssp CEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHH
Confidence 37999999999999999988641 101111246788899999 78765443332 2221 21 444
Q ss_pred HHHHHHHHHhhCCCCCCCCchhhHHHHHHHHHHhcCChHHHHHHHhhcccC---CCcccCHHHHHHHHhh----cCcccc
Q 041360 80 IWKDALSQLRSSNPREIDGMDKNVYTSIELSYNLLASKEAKSLFRLCGLYN---EGHAIQVASLLRYGMG----WGLFKN 152 (561)
Q Consensus 80 ~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s~fp---~~~~~~~~~l~~~w~a----~g~~~~ 152 (561)
....+....... .+.-.+..|+.+ .+.++..++.+. .+..+....+...+.. .|..+
T Consensus 266 ~v~~~~~~~~~~--------------~~~~~l~~l~~~-~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~- 329 (389)
T 1fnn_A 266 DVRKSSKEVLFG--------------ISEEVLIGLPLH-EKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERP- 329 (389)
T ss_dssp HHHHHHHHHSCC--------------CCHHHHHHSCHH-HHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCC-
T ss_pred HHHHHHHHHhhh--------------hHHHHHHcCCHH-HHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCC-
Confidence 444444443211 112345678775 666666566543 2214555555554432 22111
Q ss_pred cccHHHHHHHHHHHHHHHHHcCcccc
Q 041360 153 VYTLEEARSRVHRLIDNLKSSCLLLD 178 (561)
Q Consensus 153 ~~~~~~~~~~~~~~i~~L~~~sll~~ 178 (561)
.+ ...+..++++|.+.+++..
T Consensus 330 -~~----~~~~~~~l~~L~~~gli~~ 350 (389)
T 1fnn_A 330 -RV----HSQLWSYLNDLREKGIVET 350 (389)
T ss_dssp -CC----HHHHHHHHHHHHHTTSSEE
T ss_pred -CC----HHHHHHHHHHHHhCCCeEE
Confidence 01 2345678889999999965
No 178
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=65.49 E-value=9.1 Score=33.49 Aligned_cols=54 Identities=11% Similarity=0.052 Sum_probs=39.4
Q ss_pred ceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHcCCChHHHHHHHHHH
Q 041360 19 KNFLIEVLSKEEALQLFENILGDSTKTSTIQPIADEIVKRCGGLPVAVTTVANAL 73 (561)
Q Consensus 19 ~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L 73 (561)
..+++.+++.++..+++.+.+...... --.+....+++.++|.|..+..+...+
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~l~~~ 207 (226)
T 2chg_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVK-ITEDGLEALIYISGGDFRKAINALQGA 207 (226)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ceeecCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 489999999999999999887421111 114678889999999999665544433
No 179
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=52.84 E-value=18 Score=33.89 Aligned_cols=52 Identities=13% Similarity=0.088 Sum_probs=37.7
Q ss_pred ceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHcCCChHH-HHHHHH
Q 041360 19 KNFLIEVLSKEEALQLFENILGDSTKTSTIQPIADEIVKRCGGLPVA-VTTVAN 71 (561)
Q Consensus 19 ~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLa-i~~~g~ 71 (561)
..+++.+++.++..+++.+.+...... --++.+..+++.++|.|.. +..+..
T Consensus 159 ~~i~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~G~~r~a~~~l~~ 211 (323)
T 1sxj_B 159 AILRYSKLSDEDVLKRLLQIIKLEDVK-YTNDGLEAIIFTAEGDMRQAINNLQS 211 (323)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCC-BCHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred eEEeecCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 489999999999999999877421111 1146788999999999954 444433
No 180
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=44.09 E-value=31 Score=33.11 Aligned_cols=52 Identities=13% Similarity=0.197 Sum_probs=38.9
Q ss_pred ceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHcCCChHHHHHHHH
Q 041360 19 KNFLIEVLSKEEALQLFENILGDSTKTSTIQPIADEIVKRCGGLPVAVTTVAN 71 (561)
Q Consensus 19 ~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~ 71 (561)
..+++.+++.++..+++.+.+......- -.+.+..+++.++|.|..+..+..
T Consensus 171 ~~i~~~~l~~~~~~~~l~~~~~~~~~~~-~~~a~~~l~~~~~G~~r~~~~~l~ 222 (373)
T 1jr3_A 171 LQFHLKALDVEQIRHQLEHILNEEHIAH-EPRALQLLARAAEGSLRDALSLTD 222 (373)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHHHTCCB-CHHHHHHHHHHSSSCHHHHHHHHH
T ss_pred eEeeCCCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHCCCCHHHHHHHHH
Confidence 6899999999999999998764111111 146678899999999998766543
No 181
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=34.63 E-value=78 Score=27.67 Aligned_cols=50 Identities=8% Similarity=0.069 Sum_probs=37.3
Q ss_pred ceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHcCCChHHHHHH
Q 041360 19 KNFLIEVLSKEEALQLFENILGDSTKTSTIQPIADEIVKRCGGLPVAVTTV 69 (561)
Q Consensus 19 ~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~ 69 (561)
.++++.+++.++..+++.+.+...... --.++...+++.++|.+-.+..+
T Consensus 167 ~~i~l~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~g~~r~l~~~ 216 (242)
T 3bos_A 167 LTYQLQPMMDDEKLAALQRRAAMRGLQ-LPEDVGRFLLNRMARDLRTLFDV 216 (242)
T ss_dssp EEEECCCCCGGGHHHHHHHHHHHTTCC-CCHHHHHHHHHHTTTCHHHHHHH
T ss_pred ceEEeCCCCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHccCCHHHHHHH
Confidence 689999999999999999987421111 12567888999999988666544
No 182
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=33.05 E-value=51 Score=30.73 Aligned_cols=55 Identities=15% Similarity=0.063 Sum_probs=40.1
Q ss_pred ceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHcCCChHHHHHHHHHHc
Q 041360 19 KNFLIEVLSKEEALQLFENILGDSTKTSTIQPIADEIVKRCGGLPVAVTTVANALK 74 (561)
Q Consensus 19 ~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~L~ 74 (561)
..+++.+++.++..+++.+.+......-+ .+....+++.++|.|-.+..+-..+.
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~~~~~~~~~~-~~~~~~l~~~~~g~~r~~~~~l~~~~ 216 (327)
T 1iqp_A 162 AIFRFRPLRDEDIAKRLRYIAENEGLELT-EEGLQAILYIAEGDMRRAINILQAAA 216 (327)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTTCEEC-HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cEEEecCCCHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 47899999999999999988742221111 46788899999999987665544443
No 183
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=28.72 E-value=45 Score=27.61 Aligned_cols=81 Identities=14% Similarity=0.144 Sum_probs=50.9
Q ss_pred HcCCCHHHHHHHHHHHhhCCCCCCCCchhhHHHHHHHHHHhcCChHHHHHHHhhcccCCCcccCHHHHHHHHhhcCcccc
Q 041360 73 LKSKSLDIWKDALSQLRSSNPREIDGMDKNVYTSIELSYNLLASKEAKSLFRLCGLYNEGHAIQVASLLRYGMGWGLFKN 152 (561)
Q Consensus 73 L~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~sy~~L~~~~~k~cfl~~s~fp~~~~~~~~~l~~~w~a~g~~~~ 152 (561)
+..++.+.|-..++.++.......+.....++++..-+...+|+. . ...=++-|.+|+....+..
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~--------------k-~~~wrrYI~LWIrYA~~~e 72 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPD--------------K-YGQNESFARIQVRFAELKA 72 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGG--------------G-GTTCHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCcc--------------c-cccHHHHHHHHHHHHHHHH
Confidence 345689999999998886532222233456777777788888874 1 2344566788886666655
Q ss_pred cccHHHHHHHHHHHHH
Q 041360 153 VYTLEEARSRVHRLID 168 (561)
Q Consensus 153 ~~~~~~~~~~~~~~i~ 168 (561)
..+.+++.+.+...+.
T Consensus 73 i~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 73 IQEPDDARDYFQMARA 88 (161)
T ss_dssp HHCGGGCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH
Confidence 4555666666555554
No 184
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=28.17 E-value=1.2e+02 Score=27.89 Aligned_cols=53 Identities=11% Similarity=0.053 Sum_probs=38.8
Q ss_pred ceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHcCCChHHHHHHHHH
Q 041360 19 KNFLIEVLSKEEALQLFENILGDSTKTSTIQPIADEIVKRCGGLPVAVTTVANA 72 (561)
Q Consensus 19 ~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~~g~~ 72 (561)
..+++.+++.++..+++.+.+......- -.+....+++.++|.+-.+...-..
T Consensus 154 ~~i~~~~~~~~~~~~~l~~~~~~~~~~i-~~~~l~~l~~~~~G~~r~~~~~l~~ 206 (319)
T 2chq_A 154 AVFRFKPVPKEAMKKRLLEICEKEGVKI-TEDGLEALIYISGGDFRKAINALQG 206 (319)
T ss_dssp EEEECCCCCHHHHHHHHHHHHHTTCCCB-CHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4899999999999999998874322211 2467888999999998866544433
No 185
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=25.56 E-value=2.6e+02 Score=25.03 Aligned_cols=86 Identities=15% Similarity=0.164 Sum_probs=51.9
Q ss_pred CEEeeccchhhhc---ccCCcceEecCCCCH-HHHHHHHHHHhCCCCCCCCchHHHHHHHHHcCC------ChHHHHHHH
Q 041360 1 MILTSRNRDLLER---DMNSQKNFLIEVLSK-EEALQLFENILGDSTKTSTIQPIADEIVKRCGG------LPVAVTTVA 70 (561)
Q Consensus 1 IlvTTR~~~va~~---~~~~~~~~~l~~L~~-~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~g------lPLai~~~g 70 (561)
||.||........ ...-...+++++++. ++..+++.+.. . . -.+....+++.+.| +.-++..+-
T Consensus 170 ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~~-~--~---~~~~~~~l~~~~~g~~~~g~ir~l~~~l~ 243 (272)
T 1d2n_A 170 IIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALELLG-N--F---KDKERTTIAQQVKGKKVWIGIKKLLMLIE 243 (272)
T ss_dssp EEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHHHT-C--S---CHHHHHHHHHHHTTSEEEECHHHHHHHHH
T ss_pred EEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHhcC-C--C---CHHHHHHHHHHhcCCCccccHHHHHHHHH
Confidence 3556666543211 111135789999998 67777766532 1 1 14667888888887 455554444
Q ss_pred HHHcCCCHHHHHHHHHHHhhCC
Q 041360 71 NALKSKSLDIWKDALSQLRSSN 92 (561)
Q Consensus 71 ~~L~~~~~~~w~~~~~~l~~~~ 92 (561)
.+-...+...|+.++..+....
T Consensus 244 ~a~~~~~~~~~~~~~~~l~~~~ 265 (272)
T 1d2n_A 244 MSLQMDPEYRVRKFLALLREEG 265 (272)
T ss_dssp HHTTSCGGGHHHHHHHHHHHTS
T ss_pred HHhhhchHHHHHHHHHHHHHcC
Confidence 4433346678888888876663
No 186
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=20.95 E-value=40 Score=17.88 Aligned_cols=17 Identities=29% Similarity=0.442 Sum_probs=13.4
Q ss_pred cCCChHHHHHHHHHHcC
Q 041360 59 CGGLPVAVTTVANALKS 75 (561)
Q Consensus 59 c~glPLai~~~g~~L~~ 75 (561)
-.-+|||+.++++.+..
T Consensus 8 rrklplavav~agv~~a 24 (28)
T 2vda_B 8 RRKLPLAVAVAAGVMSA 24 (28)
T ss_dssp CCCCTHHHHHHHHTTCC
T ss_pred cccCchHHHHHHHHhHh
Confidence 35689999999987753
No 187
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=20.74 E-value=1.5e+02 Score=27.88 Aligned_cols=44 Identities=14% Similarity=0.093 Sum_probs=34.7
Q ss_pred ceEecCCCCHHHHHHHHHHHhCCCCCCCCchHHHHHHHHHcCCChHHHHH
Q 041360 19 KNFLIEVLSKEEALQLFENILGDSTKTSTIQPIADEIVKRCGGLPVAVTT 68 (561)
Q Consensus 19 ~~~~l~~L~~~~a~~Lf~~~~~~~~~~~~~~~~~~~i~~~c~glPLai~~ 68 (561)
..+++.++++++..+.+.+.. .- -.+.+..+++.++|.|..+..
T Consensus 160 ~~~~~~~~~~~~~~~~L~~~~-----~~-~~~~~~~l~~~s~G~~r~a~~ 203 (334)
T 1a5t_A 160 RLHYLAPPPEQYAVTWLSREV-----TM-SQDALLAALRLSAGSPGAALA 203 (334)
T ss_dssp EEEECCCCCHHHHHHHHHHHC-----CC-CHHHHHHHHHHTTTCHHHHHH
T ss_pred eeeeCCCCCHHHHHHHHHHhc-----CC-CHHHHHHHHHHcCCCHHHHHH
Confidence 589999999999999998875 11 145678899999999976544
Done!