BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041361
(127 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 76.3 bits (186), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 66/121 (54%), Gaps = 9/121 (7%)
Query: 12 RQSANYKPNIWKYDFIQSLHSKYKEEGCRSRAEKLTNDVKQMFXXXXXXXXXXXXIDRIC 71
R+S NY+P +W ++IQSL++ Y EE R +L V+ + I +
Sbjct: 6 RRSGNYQPALWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKEKMEPVQQLELIHDLK 65
Query: 72 KLGLSYLFEEQIREILVDTVAFLKNDTGC-----LEVKDLYATALCFKLLRQHGYEISQG 126
LGLS F+++I+EIL + N+ C +E DLY TAL F+LLRQHG+ ISQ
Sbjct: 66 YLGLSDFFQDEIKEIL----GVIYNEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQD 121
Query: 127 I 127
+
Sbjct: 122 V 122
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 75.5 bits (184), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 66/119 (55%), Gaps = 4/119 (3%)
Query: 12 RQSANYKPNIWKYDFIQSLHSKYKEEGCRSRAEKLTNDVKQMFXXXXXXXXXXXXIDRIC 71
R+S NY P+ W +FIQSL S YKE+ RA +L VK ID +
Sbjct: 2 RRSGNYNPSRWDVNFIQSLLSDYKEDKHVIRASELVTLVKMELEKETDQIRQLELIDDLQ 61
Query: 72 KLGLSYLFEEQIREILVDTV---AFLKNDTGCLEVKDLYATALCFKLLRQHGYEISQGI 127
++GLS F+ + +EIL + KN E +DLY+T+L F+LLR+HG++++Q +
Sbjct: 62 RMGLSDHFQNEFKEILSSIYLDHHYYKNPFPK-EERDLYSTSLAFRLLREHGFQVAQEV 119
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 73.2 bits (178), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 4/115 (3%)
Query: 13 QSANYKPNIWKYDFIQSLHSKYKEEGCRSRAEKLTNDVKQMFXXXXXXXXXXXXIDRICK 72
++ Y+P +W + IQS S+YKEE RA + + VK M ID + +
Sbjct: 36 RTGGYQPTLWDFSTIQSFDSEYKEEKHLMRAAGMIDQVKMMLQEEVDSIRRLELIDDLRR 95
Query: 73 LGLSYLFEEQIREILVDTVAFLKNDTGCLEVKDLYATALCFKLLRQHGYEISQGI 127
LG+S FE +I EIL ++ + N+ ++ +DLY+TAL F+LLRQ+ + +SQ +
Sbjct: 96 LGISCHFEREIVEIL-NSKYYTNNE---IDERDLYSTALRFRLLRQYDFSVSQEV 146
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 72.4 bits (176), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 45/115 (39%), Positives = 65/115 (56%), Gaps = 3/115 (2%)
Query: 12 RQSANYKPNIWKYDFIQSLHSKYKEEGCRSRAEKLTNDV-KQMFXXXXXXXXXXXXIDRI 70
R+SA+Y+PN W YDF+ S + E + +A+KL +V +++ ID +
Sbjct: 15 RRSADYEPNSWDYDFLLSSDTDESIEVYKDKAKKLEAEVRREINNEKAEFLTLLELIDNV 74
Query: 71 CKLGLSYLFEEQIREILVDTVAFLKNDTGCLEVKDLYATALCFKLLRQHGYEISQ 125
+LGL Y FE IR L V+ D G + L+ATAL F+LLRQHG+E+SQ
Sbjct: 75 QRLGLGYRFESDIRRALDRFVSSGGFD-GVTKTS-LHATALSFRLLRQHGFEVSQ 127
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 42/66 (63%), Gaps = 6/66 (9%)
Query: 67 IDRICKLGLSYLFEEQIREILVDTVAFLKNDTG-----CLEVKDLYATALCFKLLRQHGY 121
+DR+ +LG+S FEE+I+E L D V D G C V+D+ TA+ F+LLRQHGY
Sbjct: 252 VDRLQRLGISRYFEEEIKECL-DYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLRQHGY 310
Query: 122 EISQGI 127
++S +
Sbjct: 311 QVSADV 316
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 7/114 (6%)
Query: 12 RQSANYKPNIWKYDFIQSLHSKYKEEGCRSRAEKLTNDVKQMFXXXXXXXXXXXX-IDRI 70
R A+++P+IW D + K + R ++L +V++M ID +
Sbjct: 22 RPKADFQPSIWG-DLFLNCPDKNIDAETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSV 80
Query: 71 CKLGLSYLFEEQIREILVDTVAFLKNDTGCLEVKDLYATALCFKLLRQHGYEIS 124
+LG+SY F ++I + L + + ND DLY T++ F+LLR+HGY +S
Sbjct: 81 QRLGVSYHFTKEIEDEL-ENIYHNNNDAE----NDLYTTSIRFRLLREHGYNVS 129
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 54/117 (46%), Gaps = 7/117 (5%)
Query: 12 RQSANYKPNIWKYDFIQSLHSKYKEEGCRSRAEKLTNDVKQMFXXX-XXXXXXXXXIDRI 70
R A++ P++W F+ E E L + M ID I
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSMLLATGRKLADTLNLIDII 74
Query: 71 CKLGLSYLFEEQIREILVDTVAFLKNDTGCLEVKDLYATALCFKLLRQHGYEISQGI 127
+LG+SY FE++I EIL D + ++ C DL +AL F+LLRQHG+ IS I
Sbjct: 75 ERLGISYHFEKEIDEIL-DQI--YNQNSNC---NDLCTSALQFRLLRQHGFNISPEI 125
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 50.4 bits (119), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 54/117 (46%), Gaps = 7/117 (5%)
Query: 12 RQSANYKPNIWKYDFIQSLHSKYKEEGCRSRAEKLTNDVKQMFXXX-XXXXXXXXXIDRI 70
R A++ P++W F+ E E L + M ID I
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAQEIEALKEQTRSMLLATGRKLADTLNLIDII 74
Query: 71 CKLGLSYLFEEQIREILVDTVAFLKNDTGCLEVKDLYATALCFKLLRQHGYEISQGI 127
+LG+SY FE++I EIL D + ++ C DL +AL F+LLRQHG+ IS I
Sbjct: 75 ERLGISYHFEKEIDEIL-DQI--YNQNSNC---NDLCTSALQFRLLRQHGFNISPEI 125
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 9/118 (7%)
Query: 12 RQSANYKPNIWKYDFIQ-SLHSKYKEEGCRSRAEKLTNDVKQMFXXX-XXXXXXXXXIDR 69
R A++ P++W F+ S+ ++ E+ + E L + M ID
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAK-EIEALKEQTRNMLLATGMKLADTLNLIDT 73
Query: 70 ICKLGLSYLFEEQIREILVDTVAFLKNDTGCLEVKDLYATALCFKLLRQHGYEISQGI 127
I +LG+SY FE++I +IL D + ++ C DL +AL F+LLRQHG+ IS I
Sbjct: 74 IERLGISYHFEKEIDDIL-DQI--YNQNSNC---NDLCTSALQFRLLRQHGFNISPEI 125
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 9/118 (7%)
Query: 12 RQSANYKPNIWKYDFIQ-SLHSKYKEEGCRSRAEKLTNDVKQMFXXX-XXXXXXXXXIDR 69
R A++ P++W F+ S+ ++ E+ + E L + M ID
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAK-EIEALKEQTRNMLLATGMKLADTLNLIDT 73
Query: 70 ICKLGLSYLFEEQIREILVDTVAFLKNDTGCLEVKDLYATALCFKLLRQHGYEISQGI 127
I +LG+SY FE++I +IL D + ++ C DL +AL F+LLRQHG+ IS I
Sbjct: 74 IERLGISYHFEKEIDDIL-DQI--YNQNSNC---NDLCTSALQFRLLRQHGFNISPEI 125
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 9/118 (7%)
Query: 12 RQSANYKPNIWKYDFIQ-SLHSKYKEEGCRSRAEKLTNDVKQMFXXX-XXXXXXXXXIDR 69
R A++ P++W F+ S+ ++ E+ + E L + M ID
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAK-EIEALKEQTRNMLLATGMKLADTLNLIDT 73
Query: 70 ICKLGLSYLFEEQIREILVDTVAFLKNDTGCLEVKDLYATALCFKLLRQHGYEISQGI 127
I +LG+SY FE++I +IL D + ++ C DL +AL F+LLRQHG+ IS I
Sbjct: 74 IERLGISYHFEKEIDDIL-DQI--YNQNSNC---NDLCTSALQFRLLRQHGFNISPEI 125
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 9/118 (7%)
Query: 12 RQSANYKPNIWKYDFIQ-SLHSKYKEEGCRSRAEKLTNDVKQMFXXX-XXXXXXXXXIDR 69
R A++ P++W F+ S+ ++ E+ + E L + M ID
Sbjct: 15 RPVADFSPSLWGDQFLSFSIDNQVAEKYAK-EIEALKEQTRNMLLATGMKLADTLNLIDT 73
Query: 70 ICKLGLSYLFEEQIREILVDTVAFLKNDTGCLEVKDLYATALCFKLLRQHGYEISQGI 127
I +LG+SY FE++I +IL D + ++ C DL +AL F+LLRQHG+ IS I
Sbjct: 74 IERLGISYHFEKEIDDIL-DQI--YNQNSNC---NDLCTSALQFRLLRQHGFNISPEI 125
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 9/118 (7%)
Query: 12 RQSANYKPNIWKYDFIQ-SLHSKYKEEGCRSRAEKLTNDVKQMFXXX-XXXXXXXXXIDR 69
R A++ P++W F+ S+ ++ E+ + E L + M ID
Sbjct: 17 RPVADFSPSLWGDQFLSFSIKNQVAEKYAK-EIEALKEQTRNMLLATGMKLADTLNLIDT 75
Query: 70 ICKLGLSYLFEEQIREILVDTVAFLKNDTGCLEVKDLYATALCFKLLRQHGYEISQGI 127
I +LG+SY FE++I +IL D + ++ C DL +AL F+LLRQHG+ IS I
Sbjct: 76 IERLGISYHFEKEIDDIL-DQI--YNQNSNC---NDLCTSALQFRLLRQHGFNISPEI 127
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 9/118 (7%)
Query: 12 RQSANYKPNIWKYDFIQ-SLHSKYKEEGCRSRAEKLTNDVKQMFXXX-XXXXXXXXXIDR 69
R A++ P++W F+ S+ ++ E+ + E L + M ID
Sbjct: 17 RPVADFSPSLWGDQFLSFSIKNQVAEKYAK-EIEALKEQTRNMLLATGMKLADTLNLIDT 75
Query: 70 ICKLGLSYLFEEQIREILVDTVAFLKNDTGCLEVKDLYATALCFKLLRQHGYEISQGI 127
I +LG+SY FE++I +IL D + ++ C DL +AL F+LLRQHG+ IS I
Sbjct: 76 IERLGISYHFEKEIDDIL-DQI--YNQNSNC---NDLCTSALQFRLLRQHGFNISPEI 127
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 50.1 bits (118), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 9/118 (7%)
Query: 12 RQSANYKPNIWKYDFIQ-SLHSKYKEEGCRSRAEKLTNDVKQMFXXX-XXXXXXXXXIDR 69
R A++ P++W F+ S+ ++ E+ + E L + M ID
Sbjct: 2 RPVADFSPSLWGDQFLSFSIKNQVAEKYAK-EIEALKEQTRNMLLATGMKLADTLNLIDT 60
Query: 70 ICKLGLSYLFEEQIREILVDTVAFLKNDTGCLEVKDLYATALCFKLLRQHGYEISQGI 127
I +LG+SY FE++I +IL D + ++ C DL +AL F+LLRQHG+ IS I
Sbjct: 61 IERLGISYHFEKEIDDIL-DQI--YNQNSNC---NDLCTSALQFRLLRQHGFNISPEI 112
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 47.0 bits (110), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 27/43 (62%)
Query: 12 RQSANYKPNIWKYDFIQSLHSKYKEEGCRSRAEKLTNDVKQMF 54
R++AN PN+W YD + SL S Y + R RAE L +++K M
Sbjct: 25 RRTANPHPNVWGYDLVHSLKSPYIDSSYRERAEVLVSEIKAML 67
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 67 IDRICKLGLSYLFEEQIREILVDTVAFLKNDTGCL-----EVKDLYATALCFKLLRQHGY 121
+D I +LG+ FE++I+E L D V N+ G + DL TAL F+LLR H Y
Sbjct: 305 VDNIVRLGIYRHFEKEIKEAL-DYVYRHWNERGIGWGRLNPIADLETTALGFRLLRLHRY 363
Query: 122 EISQGI 127
+S I
Sbjct: 364 NVSPAI 369
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 67 IDRICKLGLSYLFEEQIREILVDTVAFLKNDTGCL-----EVKDLYATALCFKLLRQHGY 121
+D + +LG+ F+E+I+E L D V ++ G V D+ TA+ ++LR HGY
Sbjct: 277 VDTVERLGIDRHFKEEIKEAL-DYVYSHWDERGIGWARENPVPDIDDTAMGLRILRLHGY 335
Query: 122 EISQGI 127
+S +
Sbjct: 336 NVSSDV 341
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 31.6 bits (70), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
Query: 67 IDRICKLGLSYLFEEQIREILVDTVAFLKNDTGCLE-----VKDLYATALCFKLLRQHGY 121
+D I LG+ F+++I+ L D V ++ G V DL TAL + LR HGY
Sbjct: 253 VDNIEHLGIGRHFKQEIKGAL-DYVYRHWSERGIGWGRDSLVPDLNTTALGLRTLRMHGY 311
Query: 122 EISQGI 127
+S +
Sbjct: 312 NVSSDV 317
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,273,977
Number of Sequences: 62578
Number of extensions: 97055
Number of successful extensions: 202
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 165
Number of HSP's gapped (non-prelim): 19
length of query: 127
length of database: 14,973,337
effective HSP length: 87
effective length of query: 40
effective length of database: 9,529,051
effective search space: 381162040
effective search space used: 381162040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)