Query 041361
Match_columns 127
No_of_seqs 105 out of 714
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 10:28:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041361.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041361hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m00_A Aristolochene synthase; 100.0 2.8E-39 9.7E-44 278.4 11.8 110 12-127 17-127 (550)
2 3n0f_A Isoprene synthase; terp 100.0 5.4E-39 1.8E-43 276.9 10.9 114 12-127 15-129 (555)
3 2ong_A 4S-limonene synthase; m 100.0 8.1E-39 2.8E-43 274.9 11.6 116 12-127 2-119 (543)
4 3g4d_A (+)-delta-cadinene synt 100.0 1E-38 3.4E-43 275.2 11.9 110 12-127 22-132 (554)
5 2j5c_A 1,8-cineole synthase; t 100.0 1.6E-38 5.3E-43 274.6 8.8 111 12-127 35-146 (569)
6 1n1b_A (+)-bornyl diphosphate 100.0 1.6E-38 5.4E-43 273.5 8.1 116 12-127 6-122 (549)
7 3pya_A ENT-copalyl diphosphate 99.9 6.9E-23 2.4E-27 181.1 9.5 87 41-127 221-316 (727)
8 3sdr_A Alpha-bisabolene syntha 99.9 5.4E-23 1.8E-27 183.7 7.5 91 37-127 273-369 (817)
9 3p5p_A Taxadiene synthase; cla 99.9 8.6E-23 2.9E-27 181.3 7.7 91 37-127 221-317 (764)
10 3s9v_A Abietadiene synthase, c 99.9 9.4E-23 3.2E-27 181.5 7.3 91 37-127 245-341 (785)
11 3sdr_A Alpha-bisabolene syntha 97.9 5.1E-06 1.7E-10 74.5 2.7 44 12-55 25-68 (817)
12 1c07_A Protein (epidermal grow 82.8 6.9 0.00023 24.6 7.5 62 59-126 25-86 (95)
13 1pd3_A Nonstructural protein N 77.7 1.6 5.4E-05 26.5 2.4 33 41-73 16-48 (58)
14 1qjt_A EH1, epidermal growth f 69.4 15 0.00051 23.4 5.9 59 61-126 28-86 (99)
15 3s9v_A Abietadiene synthase, c 61.4 4 0.00014 36.5 2.4 41 15-55 4-45 (785)
16 1fi6_A EH domain protein REPS1 57.9 12 0.00041 23.3 3.7 70 48-126 9-84 (92)
17 1eh2_A EPS15; calcium binding, 49.9 34 0.0012 22.2 5.0 58 59-125 29-88 (106)
18 1b0n_B Protein (SINI protein); 42.5 33 0.0011 20.6 3.7 27 60-89 12-38 (57)
19 3vmx_A Voltage-gated hydrogen 39.9 11 0.00036 22.3 1.1 8 114-121 39-46 (48)
20 2jq6_A EH domain-containing pr 38.4 53 0.0018 22.7 4.8 60 59-126 65-125 (139)
21 3a2a_A Voltage-gated hydrogen 33.5 13 0.00045 22.6 0.8 9 114-122 46-54 (58)
22 3ldz_A STAM-1, signal transduc 28.1 1.4E+02 0.0049 20.3 6.7 21 104-124 120-140 (140)
23 3mtu_E Head morphogenesis prot 26.0 90 0.0031 20.0 3.8 32 61-92 23-55 (77)
24 1q08_A Zn(II)-responsive regul 24.6 87 0.003 19.5 3.7 25 61-88 3-27 (99)
25 1iq3_A Ralbp1-interacting prot 22.5 14 0.00049 24.2 -0.5 58 61-126 39-97 (110)
26 2p9x_A Hypothetical protein PH 22.3 1.2E+02 0.0042 20.1 4.1 36 43-78 46-82 (99)
27 2pmy_A RAS and EF-hand domain- 22.1 1.3E+02 0.0046 17.8 4.8 40 48-90 27-70 (91)
28 3brc_A Conserved protein of un 20.5 43 0.0015 24.2 1.6 14 63-76 142-155 (156)
29 4h62_V Mediator of RNA polymer 20.2 54 0.0019 17.1 1.6 18 74-91 5-22 (31)
30 3zyq_A Hepatocyte growth facto 20.0 1.1E+02 0.0038 22.5 4.0 22 104-125 124-145 (226)
No 1
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=2.8e-39 Score=278.43 Aligned_cols=110 Identities=35% Similarity=0.577 Sum_probs=100.1
Q ss_pred CCCCCCCCCCCcccccccCcccchHHHHHHHHHHHHHHHHHHHHh-hhhhhhHHHHHHHHHHhCcchhhHHHHHHHHHHH
Q 041361 12 RQSANYKPNIWKYDFIQSLHSKYKEEGCRSRAEKLTNDVKQMFLE-AADLLAKLELIDRICKLGLSYLFEEQIREILVDT 90 (127)
Q Consensus 12 r~~a~~~ps~W~~~fl~s~~~~~~~~~~~~~~e~Lk~~vr~~l~~-~~~~~~~L~lID~lqRLGI~yhFe~EI~~~L~~i 90 (127)
||+++|+||+|||+|++++...+..+.+.+++++||++||+||.+ ..++.++|+|||+||||||+|||++||+++|+++
T Consensus 17 R~~~~~~ps~W~d~fl~~~~~~~~~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i 96 (550)
T 3m00_A 17 RPVADFSPSLWGDQFLSFSIKNQVAEKYAKEIEALKEQTRNMLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQI 96 (550)
T ss_dssp CCCCCCCCCTTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHH
T ss_pred CCCCCCCcccccccccccCCcchhhHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHH
Confidence 999999999999999998766666778999999999999999975 4789999999999999999999999999999999
Q ss_pred HHhhcccCCCCCCCCHHHHHHHHHHHhhCCCCCCCCC
Q 041361 91 VAFLKNDTGCLEVKDLYATALCFKLLRQHGYEISQGI 127 (127)
Q Consensus 91 ~~~~~~~~~~~~~~dL~~~AL~FRLLRqhGy~VS~DV 127 (127)
|+.+. . ..|||+|||+|||||||||+|||||
T Consensus 97 ~~~~~----~--~~dl~~~al~FRLLR~hGy~VS~dv 127 (550)
T 3m00_A 97 YNQNS----N--CNDLCTSALQFRLLRQHGFNISPEI 127 (550)
T ss_dssp HHHCC----C--CSSHHHHHHHHHHHHHTTCCCCGGG
T ss_pred HHhcc----c--CCCHHHHHHHHHHHHhcCCCCChHH
Confidence 95432 1 2699999999999999999999997
No 2
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=5.4e-39 Score=276.94 Aligned_cols=114 Identities=42% Similarity=0.649 Sum_probs=94.6
Q ss_pred CCCCCCCCCCCcccccccCcccchHHHHHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHHHHHhCcchhhHHHHHHHHHHH
Q 041361 12 RQSANYKPNIWKYDFIQSLHSKYKEEGCRSRAEKLTNDVKQMFLEAA-DLLAKLELIDRICKLGLSYLFEEQIREILVDT 90 (127)
Q Consensus 12 r~~a~~~ps~W~~~fl~s~~~~~~~~~~~~~~e~Lk~~vr~~l~~~~-~~~~~L~lID~lqRLGI~yhFe~EI~~~L~~i 90 (127)
|++++|+||+|||+|++++.+.+..+.+.+++++||++||+||.+.. ++.++|+|||+||||||+|||++||+++|++|
T Consensus 15 ~~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~L~lID~lqRLGi~~hF~~EI~~~L~~i 94 (555)
T 3n0f_A 15 RRSADYEPNSWDYDFLLSSDTDESIEVYKDKAKKLEAEVRREINNEKAEFLTLLELIDNVQRLGLGYRFESDIRRALDRF 94 (555)
T ss_dssp --CCCCCCCTTCHHHHTCC-----CHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHTTCGGGSHHHHHHHHHHH
T ss_pred CCCCCCCcccccccccccCCcchhhHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHH
Confidence 99999999999999999876666677899999999999999997666 89999999999999999999999999999999
Q ss_pred HHhhcccCCCCCCCCHHHHHHHHHHHhhCCCCCCCCC
Q 041361 91 VAFLKNDTGCLEVKDLYATALCFKLLRQHGYEISQGI 127 (127)
Q Consensus 91 ~~~~~~~~~~~~~~dL~~~AL~FRLLRqhGy~VS~DV 127 (127)
|+.... ... ...|||+|||+|||||||||+|||||
T Consensus 95 ~~~~~~-~~~-~~~DL~~~Al~FRLLR~hGy~VS~dv 129 (555)
T 3n0f_A 95 VSSGGF-DGV-TKTSLHATALSFRLLRQHGFEVSQEA 129 (555)
T ss_dssp HHTCHH-HHH-TTTCHHHHHHHHHHHHHTTCCCCGGG
T ss_pred Hhhccc-ccc-ccCCHHHHHHHHHHHHhcCCCcChHH
Confidence 952000 001 12699999999999999999999997
No 3
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=8.1e-39 Score=274.87 Aligned_cols=116 Identities=39% Similarity=0.627 Sum_probs=101.1
Q ss_pred CCCCCCCCCCCcccccccCcccchHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhCcchhhHHHHHHHHHHHH
Q 041361 12 RQSANYKPNIWKYDFIQSLHSKYKEEGCRSRAEKLTNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEQIREILVDTV 91 (127)
Q Consensus 12 r~~a~~~ps~W~~~fl~s~~~~~~~~~~~~~~e~Lk~~vr~~l~~~~~~~~~L~lID~lqRLGI~yhFe~EI~~~L~~i~ 91 (127)
|++++|+||+||++|++++...+..+++.++++.||++||+|+.+..++.++|+|||+||||||+|||++||+++|+++|
T Consensus 2 r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~Lk~~V~~~~~~~~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~ 81 (543)
T 2ong_A 2 RRSGNYNPSRWDVNFIQSLLSDYKEDKHVIRASELVTLVKMELEKETDQIRQLELIDDLQRMGLSDHFQNEFKEILSSIY 81 (543)
T ss_dssp CCCCCCCCCSSCHHHHHHCCCSSCSTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTGGGTTHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCcccccCCCchhhhhHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHH
Confidence 89999999999999999876666666889999999999999998766899999999999999999999999999999999
Q ss_pred HhhcccCCC-CC-CCCHHHHHHHHHHHhhCCCCCCCCC
Q 041361 92 AFLKNDTGC-LE-VKDLYATALCFKLLRQHGYEISQGI 127 (127)
Q Consensus 92 ~~~~~~~~~-~~-~~dL~~~AL~FRLLRqhGy~VS~DV 127 (127)
+.+.....+ .. ..|||+|||+|||||||||+|||||
T Consensus 82 ~~~~~~~~~~~~~~~dl~~~al~FRlLR~hGy~vs~dv 119 (543)
T 2ong_A 82 LDHHYYKNPFPKEERDLYSTSLAFRLLREHGFQVAQEV 119 (543)
T ss_dssp HTTTCCCSSCCCCCCCHHHHHHHHHHHHHTTCCCCGGG
T ss_pred HhhcccccccccccCCHHHHHHHHHHHHHcCCCccHHH
Confidence 654321100 11 3699999999999999999999997
No 4
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=1e-38 Score=275.21 Aligned_cols=110 Identities=33% Similarity=0.614 Sum_probs=94.0
Q ss_pred CCCCCCCCCCCcccccccCcccchHHHHHHHHHHHHHHHHHHHHh-hhhhhhHHHHHHHHHHhCcchhhHHHHHHHHHHH
Q 041361 12 RQSANYKPNIWKYDFIQSLHSKYKEEGCRSRAEKLTNDVKQMFLE-AADLLAKLELIDRICKLGLSYLFEEQIREILVDT 90 (127)
Q Consensus 12 r~~a~~~ps~W~~~fl~s~~~~~~~~~~~~~~e~Lk~~vr~~l~~-~~~~~~~L~lID~lqRLGI~yhFe~EI~~~L~~i 90 (127)
||+++|+||+|||+|+++ ...+..+.+.+++++||++||+||.+ ..++.++|+|||+||||||+|||++||+++|+++
T Consensus 22 R~~~~~~ps~W~~~fl~~-~~~~~~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i 100 (554)
T 3g4d_A 22 RPKADFQPSIWGDLFLNC-PDKNIDAETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENI 100 (554)
T ss_dssp ---CCCCCCTTTTTTTSC-CC---CHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHH
T ss_pred CCCCCCCccccccccccC-CCchhhHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHH
Confidence 999999999999999998 55666778999999999999999975 4799999999999999999999999999999999
Q ss_pred HHhhcccCCCCCCCCHHHHHHHHHHHhhCCCCCCCCC
Q 041361 91 VAFLKNDTGCLEVKDLYATALCFKLLRQHGYEISQGI 127 (127)
Q Consensus 91 ~~~~~~~~~~~~~~dL~~~AL~FRLLRqhGy~VS~DV 127 (127)
|+. . . .+..|||+|||+|||||||||+|||||
T Consensus 101 ~~~--~--~-~~~~dl~~~al~FRlLR~hGy~VS~dv 132 (554)
T 3g4d_A 101 YHN--N--N-DAENDLYTTSIRFRLLREHGYNVSCDV 132 (554)
T ss_dssp HHS--C--C-CTTCCHHHHHHHHHHHHHTTCCCCGGG
T ss_pred Hhc--c--C-CCCCCHHHHHHHHHHHHhcCCCCChhH
Confidence 953 1 1 122699999999999999999999997
No 5
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=1.6e-38 Score=274.57 Aligned_cols=111 Identities=41% Similarity=0.663 Sum_probs=76.2
Q ss_pred CCCCCCCCCCCcccccccCcccchHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhCcchhhHHHHHHHHHHHH
Q 041361 12 RQSANYKPNIWKYDFIQSLHSKYKEEGCRSRAEKLTNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEQIREILVDTV 91 (127)
Q Consensus 12 r~~a~~~ps~W~~~fl~s~~~~~~~~~~~~~~e~Lk~~vr~~l~~~~~~~~~L~lID~lqRLGI~yhFe~EI~~~L~~i~ 91 (127)
|++++|+||+||++|++++...+..+++.++++.||++||+|+.+..++.++|+|||+||||||+|||++||+++|+.||
T Consensus 35 r~~~~~~ps~W~~~fl~~~~~~~~~~~~~~~~~~Lk~~Vr~~~~~~~d~~~~l~lID~lqrLGi~~hFe~EI~~~L~~i~ 114 (569)
T 2j5c_A 35 IRTGGYQPTLWDFSTIQSFDSEYKEEKHLMRAAGMIDQVKMMLQEEVDSIRRLELIDDLRRLGISCHFEREIVEILNSKY 114 (569)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHT
T ss_pred CCCCCCCCCcCCcccccCCCchhhhHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHH
Confidence 99999999999999999876666666788999999999999998766899999999999999999999999999999998
Q ss_pred -HhhcccCCCCCCCCHHHHHHHHHHHhhCCCCCCCCC
Q 041361 92 -AFLKNDTGCLEVKDLYATALCFKLLRQHGYEISQGI 127 (127)
Q Consensus 92 -~~~~~~~~~~~~~dL~~~AL~FRLLRqhGy~VS~DV 127 (127)
+.+. . ...|||+|||+|||||||||+|||||
T Consensus 115 ~~~~~----~-~~~Dl~~~al~FRlLR~hGy~Vs~dv 146 (569)
T 2j5c_A 115 YTNNE----I-DERDLYSTALRFRLLRQYDFSVSQEV 146 (569)
T ss_dssp TSSCC----S-CTTCHHHHHHHHHHHHHTTCCCCGGG
T ss_pred HhccC----c-ccCChhhhhHHhHHHHhcCCCcCHHH
Confidence 5311 1 22699999999999999999999997
No 6
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=1.6e-38 Score=273.54 Aligned_cols=116 Identities=41% Similarity=0.620 Sum_probs=91.7
Q ss_pred CCCCCCCCCCCcccccccCcccchHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhCcchhhHHHHHHHHHHHH
Q 041361 12 RQSANYKPNIWKYDFIQSLHSKYKEEGCRSRAEKLTNDVKQMFLEAADLLAKLELIDRICKLGLSYLFEEQIREILVDTV 91 (127)
Q Consensus 12 r~~a~~~ps~W~~~fl~s~~~~~~~~~~~~~~e~Lk~~vr~~l~~~~~~~~~L~lID~lqRLGI~yhFe~EI~~~L~~i~ 91 (127)
|++++|+||+||++|++|+...+..+++.++++.||++||+|+.+..++.++|+|||+||||||+|||++||+++|+++|
T Consensus 6 r~~~~~~ps~W~~~fl~s~~~~~~~~~~~~~~~~Lk~~V~~~~~~~~d~~~~l~lvD~lqrLGi~~hF~~EI~~~L~~i~ 85 (549)
T 1n1b_A 6 RRSGNYQPALWDSNYIQSLNTPYTEERHLDRKAELIVQVRILLKEKMEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIY 85 (549)
T ss_dssp ---------CCCHHHHHHCCCSTTSHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCcccCCCcchhhhHHHHHHHHHHHHHHHHHhcccCHHHHHHhHHHHHhCCchhhhHHHHHHHHHHHH
Confidence 89999999999999998776666667889999999999999998766899999999999999999999999999999999
Q ss_pred HhhcccCCCC-CCCCHHHHHHHHHHHhhCCCCCCCCC
Q 041361 92 AFLKNDTGCL-EVKDLYATALCFKLLRQHGYEISQGI 127 (127)
Q Consensus 92 ~~~~~~~~~~-~~~dL~~~AL~FRLLRqhGy~VS~DV 127 (127)
+.+....... ...|||+|||+|||||||||+|||||
T Consensus 86 ~~~~~~~~~~~~~~dl~~~al~FRlLR~hGy~Vs~dv 122 (549)
T 1n1b_A 86 NEHKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDV 122 (549)
T ss_dssp HHCHHHHHCCCCSCCHHHHHHHHHHHHHTTCCCCGGG
T ss_pred hhhccccccccccCChhhchhhhhHHHhcCCCcCHHH
Confidence 6421100110 12699999999999999999999997
No 7
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=99.88 E-value=6.9e-23 Score=181.11 Aligned_cols=87 Identities=37% Similarity=0.602 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHh-----hhhhhhHHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhcccCC----CCCCCCHHHHHH
Q 041361 41 SRAEKLTNDVKQMFLE-----AADLLAKLELIDRICKLGLSYLFEEQIREILVDTVAFLKNDTG----CLEVKDLYATAL 111 (127)
Q Consensus 41 ~~~e~Lk~~vr~~l~~-----~~~~~~~L~lID~lqRLGI~yhFe~EI~~~L~~i~~~~~~~~~----~~~~~dL~~~AL 111 (127)
+..+.|+..|++.... +.+++++|+|||+||||||+|||++||+++|+.+|+.+..... .....|||+|||
T Consensus 221 ~~l~YL~~~v~k~~g~VP~~yP~d~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~~~~~g~~~~~~~~~~DL~~tAL 300 (727)
T 3pya_A 221 NCLEYLRNAVKRFNGGVPNVFPVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAM 300 (727)
T ss_dssp HHHHHHHHHHHHTTTCCCSSCCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHTCCTTCCCSSSSCSCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcCcccccCCCCCCHHHHHH
Confidence 4456777777776533 3699999999999999999999999999999999964322100 011259999999
Q ss_pred HHHHHhhCCCCCCCCC
Q 041361 112 CFKLLRQHGYEISQGI 127 (127)
Q Consensus 112 ~FRLLRqhGy~VS~DV 127 (127)
+|||||||||+|||||
T Consensus 301 ~FRLLRqhGy~VS~Dv 316 (727)
T 3pya_A 301 AFRLLRQHGYQVSADV 316 (727)
T ss_dssp HHHHHHHTTCCCCGGG
T ss_pred HHHHHHhCCCCCCHHH
Confidence 9999999999999996
No 8
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=99.87 E-value=5.4e-23 Score=183.67 Aligned_cols=91 Identities=32% Similarity=0.487 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh--hhhhhhHHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhccc-CCC--CC-CCCHHHHH
Q 041361 37 EGCRSRAEKLTNDVKQMFLE--AADLLAKLELIDRICKLGLSYLFEEQIREILVDTVAFLKND-TGC--LE-VKDLYATA 110 (127)
Q Consensus 37 ~~~~~~~e~Lk~~vr~~l~~--~~~~~~~L~lID~lqRLGI~yhFe~EI~~~L~~i~~~~~~~-~~~--~~-~~dL~~~A 110 (127)
+++.++++.+.++....+.. +.+++++|+|||+||||||+|||++||+++|+++|+.+... ... .+ ..|||+||
T Consensus 273 ~~~~~YL~~~~~~~~g~VP~~yP~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tA 352 (817)
T 3sdr_A 273 AKCLEFLNSVMIKFGNFVPCLYPVDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTA 352 (817)
T ss_dssp HHHHHHHHHHHHHHSSCCCSSSCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHHCCTTCCCSSTTCSSCCHHHHH
T ss_pred hhHHHHHHHHHHhcCCCCCccCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHH
Confidence 44555555554443222333 36899999999999999999999999999999999644320 000 11 26999999
Q ss_pred HHHHHHhhCCCCCCCCC
Q 041361 111 LCFKLLRQHGYEISQGI 127 (127)
Q Consensus 111 L~FRLLRqhGy~VS~DV 127 (127)
|+|||||||||+|||||
T Consensus 353 l~FRlLR~~Gy~VS~dv 369 (817)
T 3sdr_A 353 LGFRLLRLHRYNVSPAI 369 (817)
T ss_dssp HHHHHHHHTTCCCCGGG
T ss_pred HHHHHHHHcCCCccHhH
Confidence 99999999999999996
No 9
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=99.87 E-value=8.6e-23 Score=181.34 Aligned_cols=91 Identities=31% Similarity=0.454 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHh--hhhhhhHHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhccc-CCC--CC-CCCHHHHH
Q 041361 37 EGCRSRAEKLTNDVKQMFLE--AADLLAKLELIDRICKLGLSYLFEEQIREILVDTVAFLKND-TGC--LE-VKDLYATA 110 (127)
Q Consensus 37 ~~~~~~~e~Lk~~vr~~l~~--~~~~~~~L~lID~lqRLGI~yhFe~EI~~~L~~i~~~~~~~-~~~--~~-~~dL~~~A 110 (127)
+++.++++.+.++....+.. +.+++++|+|||+||||||+|||++||+++|+.+|+.+... ... .+ ..|||+||
T Consensus 221 ~~~~~YL~~~~~~~~g~VP~~yP~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tA 300 (764)
T 3p5p_A 221 EKCFTFLNNLLDKFGGCVPCMYSIDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRHWSERGIGWGRDSLVPDLNTTA 300 (764)
T ss_dssp HHHHHHHHHHHHHHTSCCCSSCCCHHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHTCCTTCCCSSTTCSSCCHHHHH
T ss_pred hhHHHHHHHHHHhcCCCCCCcCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhcccccccCCCCCCHHHHH
Confidence 44555555554443223333 36899999999999999999999999999999999643320 000 11 25999999
Q ss_pred HHHHHHhhCCCCCCCCC
Q 041361 111 LCFKLLRQHGYEISQGI 127 (127)
Q Consensus 111 L~FRLLRqhGy~VS~DV 127 (127)
|+|||||||||+|||||
T Consensus 301 l~FRlLR~~Gy~VS~dv 317 (764)
T 3p5p_A 301 LGLRTLRMHGYNVSSDV 317 (764)
T ss_dssp HHHHHHHHTTCCCCGGG
T ss_pred HHHHHHHhcCCCccHhH
Confidence 99999999999999996
No 10
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=99.87 E-value=9.4e-23 Score=181.49 Aligned_cols=91 Identities=25% Similarity=0.403 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHHHHHHh--hhhhhhHHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhcccC-CC---CCCCCHHHHH
Q 041361 37 EGCRSRAEKLTNDVKQMFLE--AADLLAKLELIDRICKLGLSYLFEEQIREILVDTVAFLKNDT-GC---LEVKDLYATA 110 (127)
Q Consensus 37 ~~~~~~~e~Lk~~vr~~l~~--~~~~~~~L~lID~lqRLGI~yhFe~EI~~~L~~i~~~~~~~~-~~---~~~~dL~~~A 110 (127)
+++.++++.+.++....+.. +.+++++|+|||+||||||+|||++||+++|+.+|+.+.... .. ....|||+||
T Consensus 245 ~~~~~YL~~~~~~~~g~VP~~yP~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~~~~~gi~~~~~~~~~Dl~~tA 324 (785)
T 3s9v_A 245 KKCLDFLNFVLKKFGNHVPCHYPLDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDDTA 324 (785)
T ss_dssp HHHHHHHHHHHHHHSSCCCSSCCCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTCCTTCCCSSTTCSSCCHHHHH
T ss_pred hhHHHHHHHHHHhcCCCCCCcCCCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHhhhccccccccCCCCCHHHHH
Confidence 44555555554433222333 368999999999999999999999999999999996433200 00 1125999999
Q ss_pred HHHHHHhhCCCCCCCCC
Q 041361 111 LCFKLLRQHGYEISQGI 127 (127)
Q Consensus 111 L~FRLLRqhGy~VS~DV 127 (127)
|+|||||||||+|||||
T Consensus 325 l~FRlLR~~Gy~VS~dv 341 (785)
T 3s9v_A 325 MGLRILRLHGYNVSSDV 341 (785)
T ss_dssp HHHHHHHHTTCCCCGGG
T ss_pred HHHHHHHhcCCCCCHHH
Confidence 99999999999999996
No 11
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=97.87 E-value=5.1e-06 Score=74.54 Aligned_cols=44 Identities=43% Similarity=0.800 Sum_probs=31.7
Q ss_pred CCCCCCCCCCCcccccccCcccchHHHHHHHHHHHHHHHHHHHH
Q 041361 12 RQSANYKPNIWKYDFIQSLHSKYKEEGCRSRAEKLTNDVKQMFL 55 (127)
Q Consensus 12 r~~a~~~ps~W~~~fl~s~~~~~~~~~~~~~~e~Lk~~vr~~l~ 55 (127)
|++|+|+|++|+++|++|+.+++.++.+.+++++|+++||+||.
T Consensus 25 Rrsany~Ps~W~~~~i~sl~~~~~~~~~~~~~~~Lie~VK~~l~ 68 (817)
T 3sdr_A 25 RRTANPHPNVWGYDLVHSLKSPYIDSSYRERAEVLVSEIKAMLN 68 (817)
T ss_dssp ----------CHHHHHHTCCCGGGSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCCeeeccCCcccchhHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998888888899999999999999986
No 12
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=82.77 E-value=6.9 Score=24.65 Aligned_cols=62 Identities=16% Similarity=0.126 Sum_probs=33.8
Q ss_pred hhhhHHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHhhCCCCCCCC
Q 041361 59 DLLAKLELIDRICKLGLSYLFEEQIREILVDTVAFLKNDTGCLEVKDLYATALCFKLLRQHGYEISQG 126 (127)
Q Consensus 59 ~~~~~L~lID~lqRLGI~yhFe~EI~~~L~~i~~~~~~~~~~~~~~dL~~~AL~FRLLRqhGy~VS~D 126 (127)
..+..=++...+.++|+. ++|++.++..+ ..++....+.+++...-..+..-.|.|+.++..
T Consensus 25 G~I~~~el~~~l~~~g~~---~~~~~~i~~~~---D~d~dG~i~~~EF~~~~~~~~~~~~~g~~lP~~ 86 (95)
T 1c07_A 25 GFVSGLEVREIFLKTGLP---STLLAHIWSLC---DTKDCGKLSKDQFALAFHLISQKLIKGIDPPHV 86 (95)
T ss_dssp SEECHHHHHHHHHTTTCC---HHHHHHHHHHH---CTTCSSSEETTTHHHHHHHHHHHHTSCCCCCSS
T ss_pred CcEeHHHHHHHHHHcCCC---HHHHHHHHHHH---CCCCCCcCCHHHHHHHHHHHHHHHHcCCCCCCc
Confidence 334455677778889976 67777776654 222001111134443333333334899988754
No 13
>1pd3_A Nonstructural protein NS2; influenza virus A, NEP/NS2, unknown function; 2.60A {Influenza a virus} SCOP: a.30.3.1
Probab=77.69 E-value=1.6 Score=26.54 Aligned_cols=33 Identities=9% Similarity=0.209 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHh
Q 041361 41 SRAEKLTNDVKQMFLEAADLLAKLELIDRICKL 73 (127)
Q Consensus 41 ~~~e~Lk~~vr~~l~~~~~~~~~L~lID~lqRL 73 (127)
+.+.-|.++||..|..+.++++++.+..+||-|
T Consensus 16 EeIRwlIeE~Rh~Lk~TensfeQItfmqalQLl 48 (58)
T 1pd3_A 16 EEIRWLIEEVRHRLKITENSFEQITFMQALQLL 48 (58)
T ss_dssp HHHHHHHHHHHHTCCCCTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHH
Confidence 444556677887777778999999999999864
No 14
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=69.39 E-value=15 Score=23.43 Aligned_cols=59 Identities=24% Similarity=0.252 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHHHHHHhhCCCCCCCC
Q 041361 61 LAKLELIDRICKLGLSYLFEEQIREILVDTVAFLKNDTGCLEVKDLYATALCFKLLRQHGYEISQG 126 (127)
Q Consensus 61 ~~~L~lID~lqRLGI~yhFe~EI~~~L~~i~~~~~~~~~~~~~~dL~~~AL~FRLLRqhGy~VS~D 126 (127)
+..=++...+.++|+. ++|+++++..+ ..++....+ .+=|..++.---+.|+|+.++.+
T Consensus 28 Is~~el~~~l~~~~l~---~~~l~~i~~~~---D~d~dG~i~-~~EF~~~~~~~~~~~~g~~~~~~ 86 (99)
T 1qjt_A 28 VLALDAAAFLKKSGLP---DLILGKIWDLA---DTDGKGVLS-KQEFFVALRLVACAQNGLEVSLS 86 (99)
T ss_dssp CCSHHHHHHHHTSSSC---HHHHHHHHHHH---CCSSSSSCC-SHHHHHHHHHHHHHTTTCCSSGG
T ss_pred CCHHHHHHHHHHcCCC---HHHHHHHHHHH---CCCCCCcCC-HHHHHHHHHHHHHHHcCCCCChh
Confidence 4444566677888976 67777776655 222111111 23456677777889999998853
No 15
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=61.37 E-value=4 Score=36.46 Aligned_cols=41 Identities=37% Similarity=0.631 Sum_probs=15.4
Q ss_pred CCCCCCCCcccccccCcccch-HHHHHHHHHHHHHHHHHHHH
Q 041361 15 ANYKPNIWKYDFIQSLHSKYK-EEGCRSRAEKLTNDVKQMFL 55 (127)
Q Consensus 15 a~~~ps~W~~~fl~s~~~~~~-~~~~~~~~e~Lk~~vr~~l~ 55 (127)
.+|+|.+|.+.++.++..+.. ...+.++++.+++++|+||.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 45 (785)
T 3s9v_A 4 REFPPGFWKDDLIDSLTSSHKVAASDEKRIETLISEIKNMFR 45 (785)
T ss_dssp -----------------------CCHHHHHHHHHHHHHHHHH
T ss_pred ccCCcccCcccccccCCCccccCcchhHHHHHHHHHHHHHhh
Confidence 368899999999987665543 33456788999999999984
No 16
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=57.90 E-value=12 Score=23.26 Aligned_cols=70 Identities=13% Similarity=0.143 Sum_probs=37.3
Q ss_pred HHHHHHHHh----hhhhhhHHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhcccCCCCCCCCH--HHHHHHHHHHhhCCC
Q 041361 48 NDVKQMFLE----AADLLAKLELIDRICKLGLSYLFEEQIREILVDTVAFLKNDTGCLEVKDL--YATALCFKLLRQHGY 121 (127)
Q Consensus 48 ~~vr~~l~~----~~~~~~~L~lID~lqRLGI~yhFe~EI~~~L~~i~~~~~~~~~~~~~~dL--~~~AL~FRLLRqhGy 121 (127)
++++.++.. .+..+..=++...+.++|+. ++|++.++..+ ..+ .+ +.-++ +..++.-.-.+|.|+
T Consensus 9 ~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~---~~~~~~i~~~~---D~d--~d-G~i~~~EF~~~~~~~~~~~~g~ 79 (92)
T 1fi6_A 9 QYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLP---ILELSHIWELS---DFD--KD-GALTLDEFCAAFHLVVARKNGY 79 (92)
T ss_dssp HHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSC---HHHHHHHHHHH---CTT--CS-SEEEHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCC---HHHHHHHHHHH---CCC--CC-CCCCHHHHHHHHHHHHHHHcCC
Confidence 345555542 12334555677778889976 56777766554 222 11 11122 223333334568899
Q ss_pred CCCCC
Q 041361 122 EISQG 126 (127)
Q Consensus 122 ~VS~D 126 (127)
.++..
T Consensus 80 ~lp~~ 84 (92)
T 1fi6_A 80 DLPEK 84 (92)
T ss_dssp CCCCC
T ss_pred CCCcc
Confidence 98764
No 17
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=49.89 E-value=34 Score=22.23 Aligned_cols=58 Identities=9% Similarity=0.013 Sum_probs=34.5
Q ss_pred hhhhHHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhcccCCCCCCCC--HHHHHHHHHHHhhCCCCCCC
Q 041361 59 DLLAKLELIDRICKLGLSYLFEEQIREILVDTVAFLKNDTGCLEVKD--LYATALCFKLLRQHGYEISQ 125 (127)
Q Consensus 59 ~~~~~L~lID~lqRLGI~yhFe~EI~~~L~~i~~~~~~~~~~~~~~d--L~~~AL~FRLLRqhGy~VS~ 125 (127)
..+..=++...+.++|+. ++|+++++..+ ..+ .+ ..-| =|..++.---.++.|..++.
T Consensus 29 G~Is~~el~~~l~~~gl~---~~el~~i~~~~---D~d--~d-G~id~~EF~~~m~~~~~~~~g~~lP~ 88 (106)
T 1eh2_A 29 GFLSGDKVKPVLLNSKLP---VDILGRVWELS---DID--HD-GMLDRDEFAVAMFLVYCALEKEPVPM 88 (106)
T ss_dssp SCCBHHHHHHHHHTTTCC---HHHHHHHHHHH---CSS--CS-SBCCHHHHHHHHHHHHHHHHTCCCCS
T ss_pred CeEcHHHHHHHHHHcCCC---HHHHHHHHHHH---cCC--CC-CcCcHHHHHHHHHHHHHHHcCCCCCC
Confidence 334555677788899977 66777665554 222 11 1113 24555555566778988875
No 18
>1b0n_B Protein (SINI protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1
Probab=42.47 E-value=33 Score=20.62 Aligned_cols=27 Identities=26% Similarity=0.223 Sum_probs=22.6
Q ss_pred hhhHHHHHHHHHHhCcchhhHHHHHHHHHH
Q 041361 60 LLAKLELIDRICKLGLSYLFEEQIREILVD 89 (127)
Q Consensus 60 ~~~~L~lID~lqRLGI~yhFe~EI~~~L~~ 89 (127)
..+.+.||...+++|++ -+||.+.|.-
T Consensus 12 d~ewl~LI~~Ak~lGls---leEIrefL~l 38 (57)
T 1b0n_B 12 DQEWVELMVEAKEANIS---PEEIRKYLLL 38 (57)
T ss_dssp CHHHHHHHHHHHHTTCC---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCC---HHHHHHHHHH
Confidence 36789999999999987 5899988753
No 19
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=39.91 E-value=11 Score=22.29 Aligned_cols=8 Identities=63% Similarity=1.016 Sum_probs=6.0
Q ss_pred HHHhhCCC
Q 041361 114 KLLRQHGY 121 (127)
Q Consensus 114 RLLRqhGy 121 (127)
+||||||.
T Consensus 39 ~LLkqHgl 46 (48)
T 3vmx_A 39 KLLKQNGL 46 (48)
T ss_dssp HHHHHTTC
T ss_pred HHHHHcCC
Confidence 57888875
No 20
>2jq6_A EH domain-containing protein 1; metal binding protein; NMR {Homo sapiens} PDB: 2kff_A 2kfg_A 2kfh_A 2ksp_A
Probab=38.36 E-value=53 Score=22.72 Aligned_cols=60 Identities=12% Similarity=0.051 Sum_probs=35.6
Q ss_pred hhhhHHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhcccCCCCCC-CCHHHHHHHHHHHhhCCCCCCCC
Q 041361 59 DLLAKLELIDRICKLGLSYLFEEQIREILVDTVAFLKNDTGCLEV-KDLYATALCFKLLRQHGYEISQG 126 (127)
Q Consensus 59 ~~~~~L~lID~lqRLGI~yhFe~EI~~~L~~i~~~~~~~~~~~~~-~dL~~~AL~FRLLRqhGy~VS~D 126 (127)
..+..=++...+.++|+. ++|+++++..+ ..+ .+..- .+=|..++.---+++.|+.++..
T Consensus 65 G~Is~~El~~~l~~~gl~---~~el~~I~~~~---D~d--~dG~Ld~~EF~~am~li~~~~~G~~lP~~ 125 (139)
T 2jq6_A 65 GKITGANAKKEMVKSKLP---NTVLGKIWKLA---DVD--KDGLLDDEEFALANHLIKVKLEGHELPAD 125 (139)
T ss_dssp SEEEHHHHHHHHHHTTCC---HHHHHHHHHHH---CSS--CCSEEEHHHHHHHHHHHHHHHTTSCCCSC
T ss_pred CeECHHHHHHHHHHhCcC---HHHHHHHHHHh---CCC--CCCcCcHHHHHHHHHHHHHHHcCCCCCcc
Confidence 335556677788899987 56666665544 222 11100 13345566666678999998764
No 21
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=33.53 E-value=13 Score=22.56 Aligned_cols=9 Identities=78% Similarity=1.051 Sum_probs=5.1
Q ss_pred HHHhhCCCC
Q 041361 114 KLLRQHGYE 122 (127)
Q Consensus 114 RLLRqhGy~ 122 (127)
+||||||.-
T Consensus 46 ~LLkqHgl~ 54 (58)
T 3a2a_A 46 KLLRQHGLL 54 (58)
T ss_dssp HHHHHC---
T ss_pred HHHHHcCCc
Confidence 589999863
No 22
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=28.12 E-value=1.4e+02 Score=20.27 Aligned_cols=21 Identities=19% Similarity=0.275 Sum_probs=17.6
Q ss_pred CCHHHHHHHHHHHhhCCCCCC
Q 041361 104 KDLYATALCFKLLRQHGYEIS 124 (127)
Q Consensus 104 ~dL~~~AL~FRLLRqhGy~VS 124 (127)
.+|..+.=.++.|+..||..+
T Consensus 120 ~~l~~i~~~Y~~Lk~~G~~FP 140 (140)
T 3ldz_A 120 PQLSLISAMIKNLKEQGVTFP 140 (140)
T ss_dssp GGGTHHHHHHHHHHHTTCCCC
T ss_pred CCchHHHHHHHHHHHccCcCc
Confidence 368888889999999999764
No 23
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=26.03 E-value=90 Score=19.97 Aligned_cols=32 Identities=19% Similarity=0.306 Sum_probs=22.4
Q ss_pred hhHHHHHHHHHHhCcch-hhHHHHHHHHHHHHH
Q 041361 61 LAKLELIDRICKLGLSY-LFEEQIREILVDTVA 92 (127)
Q Consensus 61 ~~~L~lID~lqRLGI~y-hFe~EI~~~L~~i~~ 92 (127)
+++-+--.+||.|-++| -|+++|+..=+.++.
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~EKTIDDLEDkL~~ 55 (77)
T 3mtu_E 23 LAQSERTEALQQLRVNYGSFVSEYNDLEEKVAH 55 (77)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555778888888 589999998888763
No 24
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=24.56 E-value=87 Score=19.48 Aligned_cols=25 Identities=44% Similarity=0.709 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHhCcchhhHHHHHHHHH
Q 041361 61 LAKLELIDRICKLGLSYLFEEQIREILV 88 (127)
Q Consensus 61 ~~~L~lID~lqRLGI~yhFe~EI~~~L~ 88 (127)
++.|.+|-.++.+|++= +||+..|.
T Consensus 3 l~rL~~I~~lr~lGfsL---~eIk~~l~ 27 (99)
T 1q08_A 3 LQRLKFIRHARQLGFSL---ESIRELLS 27 (99)
T ss_dssp HHHHHHHHHHHHTTCCH---HHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCH---HHHHHHHH
Confidence 45566677777777553 46666654
No 25
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=22.50 E-value=14 Score=24.16 Aligned_cols=58 Identities=16% Similarity=0.149 Sum_probs=31.6
Q ss_pred hhHHHHHHHHHHhCcchhhHHHHHHHHHHHHHhhcccCCCCCC-CCHHHHHHHHHHHhhCCCCCCCC
Q 041361 61 LAKLELIDRICKLGLSYLFEEQIREILVDTVAFLKNDTGCLEV-KDLYATALCFKLLRQHGYEISQG 126 (127)
Q Consensus 61 ~~~L~lID~lqRLGI~yhFe~EI~~~L~~i~~~~~~~~~~~~~-~dL~~~AL~FRLLRqhGy~VS~D 126 (127)
+..=++...+.++|+. ++|+++++..+ ..+ .+..- .+=|..++.-.-.+|.|+.++.-
T Consensus 39 Is~~el~~~l~~~gl~---~~el~~i~~~~---D~d--~dG~I~~~EF~~~m~~~~~~~~G~~lP~~ 97 (110)
T 1iq3_A 39 ISGSVAKNFFTKSKLS---IPELSYIWELS---DAD--CDGALTLPEFCAAFHLIVARKNGYPLPEG 97 (110)
T ss_dssp EEHHHHHHHCCSSSCS---SCCHHHHHHHH---CSS--SCSEEEHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred EcHHHHHHHHHHcCCC---HHHHHHHHHHH---cCC--CCCcCcHHHHHHHHHHHHHHHcCCCCCcc
Confidence 4444566677888876 45777766554 222 11100 12233444444557889998753
No 26
>2p9x_A Hypothetical protein PH0832; pyrococcus horikoshii OT3, NPPSFA, national project on prote structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=22.31 E-value=1.2e+02 Score=20.13 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHH-HhCcchh
Q 041361 43 AEKLTNDVKQMFLEAADLLAKLELIDRIC-KLGLSYL 78 (127)
Q Consensus 43 ~e~Lk~~vr~~l~~~~~~~~~L~lID~lq-RLGI~yh 78 (127)
=.+.|+.|.++|.+-..-+--|.+|+-++ +||+.--
T Consensus 46 P~kFkeaV~~LFGEysarllem~i~~~~~~~L~l~~~ 82 (99)
T 2p9x_A 46 PQKFKEAVSKLFGEYSARLLEMVIISKLKGRLGEDIE 82 (99)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHSCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 35677888888876443333456899998 8886543
No 27
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=22.12 E-value=1.3e+02 Score=17.82 Aligned_cols=40 Identities=10% Similarity=0.174 Sum_probs=25.1
Q ss_pred HHHHHHHHh----hhhhhhHHHHHHHHHHhCcchhhHHHHHHHHHHH
Q 041361 48 NDVKQMFLE----AADLLAKLELIDRICKLGLSYLFEEQIREILVDT 90 (127)
Q Consensus 48 ~~vr~~l~~----~~~~~~~L~lID~lqRLGI~yhFe~EI~~~L~~i 90 (127)
++++.++.. .+..+..=+|...+..+|+. ++|++.++..+
T Consensus 27 ~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~---~~~~~~~~~~~ 70 (91)
T 2pmy_A 27 ARLRSVFAACDANRSGRLEREEFRALCTELRVR---PADAEAVFQRL 70 (91)
T ss_dssp HHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCC---HHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcC---HHHHHHHHHHh
Confidence 445555542 23445666777888999954 57777776655
No 28
>3brc_A Conserved protein of unknown function; methanobacterium thermoautotrophicum, STR genomics, MCSG, PSI-2; 1.60A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=20.50 E-value=43 Score=24.16 Aligned_cols=14 Identities=14% Similarity=0.482 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhCcc
Q 041361 63 KLELIDRICKLGLS 76 (127)
Q Consensus 63 ~L~lID~lqRLGI~ 76 (127)
..+|+++|+|+|+.
T Consensus 142 ~~E~~~AL~RiG~~ 155 (156)
T 3brc_A 142 RSEMTHALERIGFK 155 (156)
T ss_dssp HHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHhCcC
Confidence 35688999999974
No 29
>4h62_V Mediator of RNA polymerase II transcription subun; mediator complex, nucleus; HET: MES; 3.00A {Saccharomyces cerevisiae}
Probab=20.22 E-value=54 Score=17.06 Aligned_cols=18 Identities=33% Similarity=0.552 Sum_probs=10.5
Q ss_pred CcchhhHHHHHHHHHHHH
Q 041361 74 GLSYLFEEQIREILVDTV 91 (127)
Q Consensus 74 GI~yhFe~EI~~~L~~i~ 91 (127)
|+...=|++|++.|++-.
T Consensus 5 gvtrfdekqieelldnci 22 (31)
T 4h62_V 5 GVTRFDEKQIEELLDNCI 22 (31)
T ss_dssp -----CHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHH
Confidence 566666899999998743
No 30
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=20.01 E-value=1.1e+02 Score=22.55 Aligned_cols=22 Identities=5% Similarity=0.193 Sum_probs=18.8
Q ss_pred CCHHHHHHHHHHHhhCCCCCCC
Q 041361 104 KDLYATALCFKLLRQHGYEISQ 125 (127)
Q Consensus 104 ~dL~~~AL~FRLLRqhGy~VS~ 125 (127)
.+|-.++=.++.|+..||..++
T Consensus 124 ~~l~~i~~~Y~~Lk~~G~~FP~ 145 (226)
T 3zyq_A 124 PKYKVVQDTYQIMKVEGHVFPE 145 (226)
T ss_dssp GGGHHHHHHHHHHHHHTCCCCC
T ss_pred cchHHHHHHHHHHHhcCCCccc
Confidence 3688899999999999998864
Done!