BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 041368
         (102 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2A7S|A Chain A, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
           Mycobacterium Tuberculosis
 pdb|2A7S|B Chain B, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
           Mycobacterium Tuberculosis
 pdb|2A7S|C Chain C, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
           Mycobacterium Tuberculosis
 pdb|2A7S|D Chain D, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
           Mycobacterium Tuberculosis
 pdb|2A7S|E Chain E, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
           Mycobacterium Tuberculosis
 pdb|2A7S|F Chain F, Crystal Structure Of The Acyl-Coa Carboxylase, Accd5, From
           Mycobacterium Tuberculosis
          Length = 548

 Score = 26.6 bits (57), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 34  ADQGTTHFAAVHKVFGASNASKLLSRIPPHKRLDAVVSLCYEAMART 80
           A  GT H+AA  +        +LLS +PP+   DA     Y+A A T
Sbjct: 243 AKSGTAHYAASGEQDAFDYVRELLSYLPPNNSTDAPR---YQAAAPT 286


>pdb|2BZR|A Chain A, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
           Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
 pdb|2BZR|B Chain B, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
           Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
 pdb|2BZR|C Chain C, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
           Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
 pdb|2BZR|D Chain D, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
           Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
 pdb|2BZR|E Chain E, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
           Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
 pdb|2BZR|F Chain F, Crystal Structure Of Accd5 (Rv3280), An Acyl-Coa
           Carboxylase Beta-Subunit From Mycobacterium Tuberculosis
          Length = 548

 Score = 26.6 bits (57), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 34  ADQGTTHFAAVHKVFGASNASKLLSRIPPHKRLDAVVSLCYEAMART 80
           A  GT H+AA  +        +LLS +PP+   DA     Y+A A T
Sbjct: 243 AKSGTAHYAASGEQDAFDYVRELLSYLPPNNSTDAPR---YQAAAPT 286


>pdb|4FYD|A Chain A, Crystal Structure Of Yeast Dna Polymerase Alpha Bound To
           Dna/rna And Dgtp
 pdb|4FYD|B Chain B, Crystal Structure Of Yeast Dna Polymerase Alpha Bound To
           Dna/rna And Dgtp
          Length = 910

 Score = 26.2 bits (56), Expect = 5.2,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 62  PHKRLDAVVSLCYEAMARTRDPIYGCVGHI 91
           PHKR+   +    +A+  T + +YGC+G++
Sbjct: 582 PHKRVQCDIR--QQALKLTANSMYGCLGYV 609


>pdb|4FVM|A Chain A, Crystal Structure Of Yeast Dna Polymerase Alpha
 pdb|4FXD|A Chain A, Crystal Structure Of Yeast Dna Polymerase Alpha Bound To
           Dna/rna
 pdb|4FXD|B Chain B, Crystal Structure Of Yeast Dna Polymerase Alpha Bound To
           Dna/rna
          Length = 910

 Score = 26.2 bits (56), Expect = 5.2,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 62  PHKRLDAVVSLCYEAMARTRDPIYGCVGHI 91
           PHKR+   +    +A+  T + +YGC+G++
Sbjct: 582 PHKRVQCDIR--QQALKLTANSMYGCLGYV 609


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.326    0.137    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,789,507
Number of Sequences: 62578
Number of extensions: 88182
Number of successful extensions: 228
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 226
Number of HSP's gapped (non-prelim): 5
length of query: 102
length of database: 14,973,337
effective HSP length: 67
effective length of query: 35
effective length of database: 10,780,611
effective search space: 377321385
effective search space used: 377321385
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)