Query 041368
Match_columns 102
No_of_seqs 105 out of 283
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 06:23:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041368.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041368hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03195 DUF260: Protein of un 100.0 1E-51 2.2E-56 285.2 8.2 90 11-101 1-90 (101)
2 PF08158 NUC130_3NT: NUC130/3N 64.7 3.9 8.5E-05 25.1 1.2 37 28-74 5-45 (52)
3 PF15300 INT_SG_DDX_CT_C: INTS 52.0 13 0.00027 24.0 2.0 27 51-77 23-51 (65)
4 PF03242 LEA_3: Late embryogen 49.3 6.1 0.00013 27.0 0.2 17 73-89 58-74 (93)
5 PF04706 Dickkopf_N: Dickkopf 49.0 13 0.00028 22.9 1.6 18 8-25 19-36 (52)
6 PRK00451 glycine dehydrogenase 46.8 13 0.00028 30.1 1.7 35 29-65 2-36 (447)
7 PF11333 DUF3135: Protein of u 44.4 35 0.00076 22.7 3.3 60 38-101 17-78 (83)
8 PF00172 Zn_clus: Fungal Zn(2) 34.9 25 0.00054 19.7 1.2 15 10-24 1-15 (40)
9 PF14623 Vint: Hint-domain 34.0 10 0.00022 28.5 -0.7 39 43-87 121-159 (162)
10 PF05965 FYRC: F/Y rich C-term 30.1 43 0.00094 21.5 1.9 24 42-65 51-76 (86)
11 PF11387 DUF2795: Protein of u 30.0 62 0.0013 18.8 2.4 31 32-64 6-37 (44)
12 PF14653 IGFL: Insulin growth 27.6 33 0.00071 23.5 1.0 14 20-33 43-56 (89)
13 COG0295 Cdd Cytidine deaminase 23.0 54 0.0012 23.8 1.5 27 4-30 80-107 (134)
14 COG0339 Dcp Zn-dependent oligo 22.3 42 0.00091 30.5 1.0 31 24-54 353-384 (683)
15 PF07208 DUF1414: Protein of u 22.3 46 0.001 20.0 0.9 20 53-72 16-36 (44)
16 PF04727 ELMO_CED12: ELMO/CED- 21.6 2.8E+02 0.0061 19.6 5.1 43 32-80 51-93 (170)
17 cd05562 Peptidases_S53_like Pe 21.5 1.1E+02 0.0023 23.8 3.0 43 50-93 223-269 (275)
18 PF13776 DUF4172: Domain of un 21.4 1.5E+02 0.0032 19.7 3.2 45 30-76 9-56 (82)
19 cd07920 Pumilio Pumilio-family 21.1 1.5E+02 0.0032 22.6 3.6 40 48-88 164-203 (322)
20 smart00542 FYRC "FY-rich" doma 20.9 61 0.0013 21.2 1.3 19 46-64 51-71 (86)
21 cd09071 FAR_C C-terminal domai 20.6 34 0.00074 21.7 0.1 21 46-66 45-65 (92)
22 PLN02721 threonine aldolase 20.2 2.1E+02 0.0045 21.7 4.3 49 50-101 4-52 (353)
No 1
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=100.00 E-value=1e-51 Score=285.24 Aligned_cols=90 Identities=62% Similarity=1.082 Sum_probs=88.2
Q ss_pred CChhhhhhhcCCCCCCccCcCCCCCccccHHHHHHHhhchhhHHHHhhcCCCcchHHHHHHHHHHHhhcccCCCcccHHH
Q 041368 11 PCGACKFLRRKCVKGCVFAPYFDADQGTTHFAAVHKVFGASNASKLLSRIPPHKRLDAVVSLCYEAMARTRDPIYGCVGH 90 (102)
Q Consensus 11 ~CaaCk~lRr~C~~~C~laPyFpa~~~~~~F~~vhkvFG~snv~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPV~Gc~G~ 90 (102)
+|||||||||+|+++|+||||||+++ +++|++||||||++||+|||+++|+++|+++|+||+|||++|.+||||||+|+
T Consensus 1 ~CaaCk~lRr~C~~~C~laPyFP~~~-~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~ 79 (101)
T PF03195_consen 1 PCAACKHLRRRCSPDCVLAPYFPADQ-PQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGI 79 (101)
T ss_pred CChHHHHHhCCCCCCCcCCCCCChhH-HHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHH
Confidence 79999999999999999999999998 69999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhc
Q 041368 91 IVALQQQVSIT 101 (102)
Q Consensus 91 i~~Lq~ql~~l 101 (102)
||.|||||+++
T Consensus 80 i~~L~~ql~~~ 90 (101)
T PF03195_consen 80 ISQLQQQLQQL 90 (101)
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 2
>PF08158 NUC130_3NT: NUC130/3NT domain; InterPro: IPR012977 This N-terminal domain is found in a novel nucleolar protein family defined by NUC130/133 [].
Probab=64.71 E-value=3.9 Score=25.12 Aligned_cols=37 Identities=24% Similarity=0.407 Sum_probs=26.5
Q ss_pred cCcCCCCCccccHHHHHHHhhchhhHHHHhhc----CCCcchHHHHHHHHH
Q 041368 28 FAPYFDADQGTTHFAAVHKVFGASNASKLLSR----IPPHKRLDAVVSLCY 74 (102)
Q Consensus 28 laPyFpa~~~~~~F~~vhkvFG~snv~k~L~~----~~~~~R~~a~~Sl~y 74 (102)
.++|+|.+ ...| ..-+..+|++ ++|+.|...++||+-
T Consensus 5 va~cYp~~--~~~F--------p~~L~~lL~~~~~~L~p~lR~~lv~aLiL 45 (52)
T PF08158_consen 5 VAHCYPKE--TKDF--------PQELIDLLRNHHTVLDPDLRMKLVKALIL 45 (52)
T ss_pred cccccHHH--HHHH--------HHHHHHHHHhccccCCHHHHHHHHHHHHH
Confidence 46777764 4567 2345666655 889999999999984
No 3
>PF15300 INT_SG_DDX_CT_C: INTS6/SAGE1/DDX26B/CT45 C-terminus
Probab=51.99 E-value=13 Score=24.00 Aligned_cols=27 Identities=30% Similarity=0.293 Sum_probs=23.3
Q ss_pred hhHHHHhhcC--CCcchHHHHHHHHHHHh
Q 041368 51 SNASKLLSRI--PPHKRLDAVVSLCYEAM 77 (102)
Q Consensus 51 snv~k~L~~~--~~~~R~~a~~Sl~yEA~ 77 (102)
+.|.++|+.+ |.+.|...+..++.||.
T Consensus 23 e~iF~lL~~vqG~~~~r~~fv~~~IkEA~ 51 (65)
T PF15300_consen 23 EKIFKLLEQVQGPLEVRKQFVEMIIKEAA 51 (65)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 4688899998 67889999999999995
No 4
>PF03242 LEA_3: Late embryogenesis abundant protein; InterPro: IPR004926 Late-embryogenesis abundant (LEA) genes encode a diverse group of proteins that accumulate to high levels during the maturation phase of seed development []. This group includes LEA-5 [], whose expression is induced by salt, drought and heat stress [], and related proteins. ; GO: 0006950 response to stress
Probab=49.26 E-value=6.1 Score=27.03 Aligned_cols=17 Identities=24% Similarity=0.302 Sum_probs=14.3
Q ss_pred HHHHhhcccCCCcccHH
Q 041368 73 CYEAMARTRDPIYGCVG 89 (102)
Q Consensus 73 ~yEA~~R~~dPV~Gc~G 89 (102)
-.|-..|..|||-|++-
T Consensus 58 ~~~~~~W~pDPvTGyyr 74 (93)
T PF03242_consen 58 SKEKSSWMPDPVTGYYR 74 (93)
T ss_pred cccccccccCCCCcccc
Confidence 56778999999999874
No 5
>PF04706 Dickkopf_N: Dickkopf N-terminal cysteine-rich region; InterPro: IPR006796 Dickkopf proteins are a class of Wnt antagonists. They possess two conserved cysteine-rich regions. This family represents the N-terminal conserved region []. The C-terminal region has been found to share significant sequence similarity to the colipase fold (IPR001981 from INTERPRO) [].; GO: 0007275 multicellular organismal development, 0030178 negative regulation of Wnt receptor signaling pathway, 0005576 extracellular region
Probab=48.99 E-value=13 Score=22.89 Aligned_cols=18 Identities=22% Similarity=0.635 Sum_probs=15.5
Q ss_pred CCCCChhhhhhhcCCCCC
Q 041368 8 GGGPCGACKFLRRKCVKG 25 (102)
Q Consensus 8 ~~~~CaaCk~lRr~C~~~ 25 (102)
....|..||-++++|..|
T Consensus 19 ~~~~C~~Cr~~~~rC~Rd 36 (52)
T PF04706_consen 19 FESKCLPCRKRRKRCTRD 36 (52)
T ss_pred CCccChhhccCCCCCCCC
Confidence 348999999999999865
No 6
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=46.83 E-value=13 Score=30.07 Aligned_cols=35 Identities=20% Similarity=0.435 Sum_probs=27.4
Q ss_pred CcCCCCCccccHHHHHHHhhchhhHHHHhhcCCCcch
Q 041368 29 APYFDADQGTTHFAAVHKVFGASNASKLLSRIPPHKR 65 (102)
Q Consensus 29 aPyFpa~~~~~~F~~vhkvFG~snv~k~L~~~~~~~R 65 (102)
-||.|.+ ++.-+..-+.||.++|-.+++.+|.+.|
T Consensus 2 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 36 (447)
T PRK00451 2 MPYIPHT--EEDIREMLDAIGVKSIDELFADIPEELR 36 (447)
T ss_pred CCCCCCC--HHHHHHHHHHhCCCCHHHHHHhCCHHHH
Confidence 3899987 3788889999999999887777664433
No 7
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=44.41 E-value=35 Score=22.72 Aligned_cols=60 Identities=13% Similarity=0.156 Sum_probs=46.3
Q ss_pred ccHHHHHHHhhchhhHHHHhhcCCCcchH--HHHHHHHHHHhhcccCCCcccHHHHHHHHHHHHhc
Q 041368 38 TTHFAAVHKVFGASNASKLLSRIPPHKRL--DAVVSLCYEAMARTRDPIYGCVGHIVALQQQVSIT 101 (102)
Q Consensus 38 ~~~F~~vhkvFG~snv~k~L~~~~~~~R~--~a~~Sl~yEA~~R~~dPV~Gc~G~i~~Lq~ql~~l 101 (102)
|+.|.... ..-+-.++...|++.++ .++.+-|=---.|.++|+.-|+-+...+..++..+
T Consensus 17 Pe~fe~lr----~~~~ee~I~~a~~~~q~rL~~lQ~~Id~~~~~~knP~~~~~~l~~~m~~~~~~l 78 (83)
T PF11333_consen 17 PEAFEQLR----QELIEEMIESAPEEMQPRLRALQFHIDMQRSRCKNPLHRCVLLSRMMYEQFYKL 78 (83)
T ss_pred HHHHHHHH----HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHH
Confidence 68886544 35677799999987654 45666666667789999999999999999988764
No 8
>PF00172 Zn_clus: Fungal Zn(2)-Cys(6) binuclear cluster domain; InterPro: IPR001138 The N-terminal region of a number of fungal transcriptional regulatory proteins contains a Cys-rich motif that is involved in zinc-dependent binding of DNA. The region forms a binuclear Zn cluster, in which two Zn atoms are bound by six Cys residues [, ]. A wide range of proteins are known to contain this domain. These include the proteins involved in arginine, proline, pyrimidine, quinate, maltose and galactose metabolism; amide and GABA catabolism; leucine biosynthesis, amongst others.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1AJY_A 1ZME_C 2VEQ_A 1CLD_A 1PYI_B 1D66_A 3COQ_A 1AW6_A 2ER8_A 2ERE_A ....
Probab=34.89 E-value=25 Score=19.69 Aligned_cols=15 Identities=27% Similarity=0.678 Sum_probs=10.3
Q ss_pred CCChhhhhhhcCCCC
Q 041368 10 GPCGACKFLRRKCVK 24 (102)
Q Consensus 10 ~~CaaCk~lRr~C~~ 24 (102)
.+|..|+..+.+|..
T Consensus 1 ~aC~~Cr~rK~kCd~ 15 (40)
T PF00172_consen 1 RACDRCRRRKVKCDG 15 (40)
T ss_dssp -SBHHHHHHTS--ST
T ss_pred CcChHHHhhCcCcCC
Confidence 378899999998886
No 9
>PF14623 Vint: Hint-domain
Probab=33.97 E-value=10 Score=28.46 Aligned_cols=39 Identities=26% Similarity=0.372 Sum_probs=27.9
Q ss_pred HHHHhhchhhHHHHhhcCCCcchHHHHHHHHHHHhhcccCCCccc
Q 041368 43 AVHKVFGASNASKLLSRIPPHKRLDAVVSLCYEAMARTRDPIYGC 87 (102)
Q Consensus 43 ~vhkvFG~snv~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPV~Gc 87 (102)
.+|.+||...|.+-|..|+.-.-. +.+...-.|||..|-
T Consensus 121 raH~fFG~~~V~~~L~~L~~~~~G------~v~~~g~~Rd~~Tgl 159 (162)
T PF14623_consen 121 RAHAFFGDNAVVRDLASLPGFANG------VVECRGVKRDPETGL 159 (162)
T ss_pred EeecccCcHHHHHHHHhCCCCCCC------EEEecceEECccccc
Confidence 479999999999999999864211 334445578887663
No 10
>PF05965 FYRC: F/Y rich C-terminus; InterPro: IPR003889 The "FY-rich" domain C-terminal region is sometimes closely juxtaposed with the N-terminal region (IPR003888 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=30.06 E-value=43 Score=21.47 Aligned_cols=24 Identities=25% Similarity=0.530 Sum_probs=17.8
Q ss_pred HHHHHhhchhh--HHHHhhcCCCcch
Q 041368 42 AAVHKVFGASN--ASKLLSRIPPHKR 65 (102)
Q Consensus 42 ~~vhkvFG~sn--v~k~L~~~~~~~R 65 (102)
.+-+.+||.++ |.++|++||..++
T Consensus 51 isG~~~FGls~p~V~~lie~Lp~a~~ 76 (86)
T PF05965_consen 51 ISGPEMFGLSNPAVQRLIESLPGADK 76 (86)
T ss_dssp --HHHHHSTTSHHHHHHHTTSTTGGG
T ss_pred CCHhHhcCCCCHHHHHHHHhCCCcch
Confidence 45678899875 8999999997554
No 11
>PF11387 DUF2795: Protein of unknown function (DUF2795); InterPro: IPR021527 This family of proteins has no known function.
Probab=29.99 E-value=62 Score=18.83 Aligned_cols=31 Identities=19% Similarity=0.399 Sum_probs=20.3
Q ss_pred CCCCccccHHHHHHHhhc-hhhHHHHhhcCCCcc
Q 041368 32 FDADQGTTHFAAVHKVFG-ASNASKLLSRIPPHK 64 (102)
Q Consensus 32 Fpa~~~~~~F~~vhkvFG-~snv~k~L~~~~~~~ 64 (102)
||+++ .+.....+=-| ...|+..|+.+|..+
T Consensus 6 yPa~k--~~Lv~~A~~~gA~~~vl~~L~~lP~~~ 37 (44)
T PF11387_consen 6 YPADK--DELVRHARRNGAPDDVLDALERLPDRE 37 (44)
T ss_pred CCCCH--HHHHHHHHHcCCCHHHHHHHHHCCccC
Confidence 78876 44544444444 457899999999544
No 12
>PF14653 IGFL: Insulin growth factor-like family
Probab=27.56 E-value=33 Score=23.51 Aligned_cols=14 Identities=50% Similarity=1.132 Sum_probs=12.8
Q ss_pred cCCCCCCccCcCCC
Q 041368 20 RKCVKGCVFAPYFD 33 (102)
Q Consensus 20 r~C~~~C~laPyFp 33 (102)
++|.++|.|.|.|.
T Consensus 43 ~~Cg~~Ctf~pcfe 56 (89)
T PF14653_consen 43 RKCGPNCTFWPCFE 56 (89)
T ss_pred cccCCCCCccCccc
Confidence 67999999999996
No 13
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=22.98 E-value=54 Score=23.79 Aligned_cols=27 Identities=22% Similarity=0.541 Sum_probs=19.7
Q ss_pred CCCCCCCCChhhhhh-hcCCCCCCccCc
Q 041368 4 SANNGGGPCGACKFL-RRKCVKGCVFAP 30 (102)
Q Consensus 4 ~~~~~~~~CaaCk~l-Rr~C~~~C~laP 30 (102)
..+...+||.+||-. ..=|.++...-.
T Consensus 80 ~~~~~~sPCG~CRQ~i~Ef~~~d~~ii~ 107 (134)
T COG0295 80 DTGKPVSPCGACRQVLAEFCGDDTLIIL 107 (134)
T ss_pred CCCCCcCCcHHHHHHHHHhcCCCceEEE
Confidence 346778999999954 566777776654
No 14
>COG0339 Dcp Zn-dependent oligopeptidases [Amino acid transport and metabolism]
Probab=22.31 E-value=42 Score=30.45 Aligned_cols=31 Identities=19% Similarity=0.408 Sum_probs=22.4
Q ss_pred CCCccCcCCCCCcc-ccHHHHHHHhhchhhHH
Q 041368 24 KGCVFAPYFDADQG-TTHFAAVHKVFGASNAS 54 (102)
Q Consensus 24 ~~C~laPyFpa~~~-~~~F~~vhkvFG~snv~ 54 (102)
++=-++||||-++= ..-|..++++||..=+-
T Consensus 353 de~elrpYF~l~~Vl~GlF~~~~rLfGI~~~e 384 (683)
T COG0339 353 DEEELRPYFPLNKVLEGLFEVAKRLFGITFVE 384 (683)
T ss_pred CHHHhhhcCChhHHHHHHHHHHHHHcCeEEEE
Confidence 34568999997641 25799999999975443
No 15
>PF07208 DUF1414: Protein of unknown function (DUF1414); InterPro: IPR009857 This family consists of several hypothetical bacterial proteins of around 70 residues in length. Members of this family are often referred to as YejL. The function of this family is unknown.; PDB: 2JPQ_A 2JUZ_B 2JUW_B 2QTI_A 2OTA_A 2JR2_A 2JRX_A.
Probab=22.28 E-value=46 Score=20.05 Aligned_cols=20 Identities=20% Similarity=0.521 Sum_probs=13.7
Q ss_pred HHHHhh-cCCCcchHHHHHHH
Q 041368 53 ASKLLS-RIPPHKRLDAVVSL 72 (102)
Q Consensus 53 v~k~L~-~~~~~~R~~a~~Sl 72 (102)
++++|. ++|+++|..++++.
T Consensus 16 vTniln~~V~~~qR~~iAe~F 36 (44)
T PF07208_consen 16 VTNILNTSVPPAQRQAIAEKF 36 (44)
T ss_dssp HHHHHHHCS-HHHHHHHHHHH
T ss_pred HHHHHhhcCCHHHHHHHHHHH
Confidence 455664 79999999877654
No 16
>PF04727 ELMO_CED12: ELMO/CED-12 family; InterPro: IPR006816 This entry represents the ELMO (EnguLfment and Cell MOtility) domain, which is found in a number of eukaryotic proteins involved in the cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility, including CED-12, ELMO-1 and ELMO-2. ELMO-1 and ELMO-2 are components of signalling pathways that regulate phagocytosis and cell migration and are mammalian orthologues of the Caenorhabditis elegans gene, ced-12 that is required for the engulfment of dying cells and cell migration. ELMO-1/2 act in association with DOCK1 and CRK. ELMO-1/2 interact with the SH3-domain of DOCK1 via an SH3-binding site to enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1. ELMO-1/2 could be part of a complex with DOCK1 and Rac1 that could be required to activate Rac Rho small GTPases. Regulatory GTPases in the Ras superfamily employ a cycle of alternating GTP binding and hydrolysis, controlled by guanine nucleotide exchange factors and GTPase-activating proteins (GAPs), as essential features of their actions in cells. Within the Ras superfamily, the Arf family is composed of 30 members, including 22 Arf-like (Arl) proteins. The ELMO domain has been proposed to be a GAP domain for ARL2 and other members of the Arf family [].; GO: 0006909 phagocytosis, 0005856 cytoskeleton
Probab=21.64 E-value=2.8e+02 Score=19.56 Aligned_cols=43 Identities=16% Similarity=0.253 Sum_probs=32.5
Q ss_pred CCCCccccHHHHHHHhhchhhHHHHhhcCCCcchHHHHHHHHHHHhhcc
Q 041368 32 FDADQGTTHFAAVHKVFGASNASKLLSRIPPHKRLDAVVSLCYEAMART 80 (102)
Q Consensus 32 Fpa~~~~~~F~~vhkvFG~snv~k~L~~~~~~~R~~a~~Sl~yEA~~R~ 80 (102)
|+.++|..+|..+ -++|..+++-+.+. .++.++.|+-|...+.
T Consensus 51 FQ~~dP~tDFR~~-G~LgL~~L~yf~~~-----~~~~~~~~l~~~~~~~ 93 (170)
T PF04727_consen 51 FQGEDPATDFRGM-GLLGLDCLLYFAEN-----YPDEFRRILREQSSRS 93 (170)
T ss_pred CCCCCcHHHHhhh-hHHHHHHHHHHHHH-----ChHHHHHHHHHccCcc
Confidence 5667788899776 78888888888875 3446777777777776
No 17
>cd05562 Peptidases_S53_like Peptidase domain in the S53 family. Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi
Probab=21.48 E-value=1.1e+02 Score=23.79 Aligned_cols=43 Identities=16% Similarity=0.117 Sum_probs=29.0
Q ss_pred hhhHHHHhhcCCCcchHHHHHHHHHHHhhcc----cCCCcccHHHHHH
Q 041368 50 ASNASKLLSRIPPHKRLDAVVSLCYEAMART----RDPIYGCVGHIVA 93 (102)
Q Consensus 50 ~snv~k~L~~~~~~~R~~a~~Sl~yEA~~R~----~dPV~Gc~G~i~~ 93 (102)
++.+.-+|.+..|+.-.+.++.++.+..-.. .|+.+| +|+|.-
T Consensus 223 VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~g~d~~~G-~G~vda 269 (275)
T cd05562 223 AAGVAALVLSANPGLTPADIRDALRSTALDMGEPGYDNASG-SGLVDA 269 (275)
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCCCCCCCcC-cCcccH
Confidence 4566777777777777777888887755433 567777 676654
No 18
>PF13776 DUF4172: Domain of unknown function (DUF4172)
Probab=21.36 E-value=1.5e+02 Score=19.69 Aligned_cols=45 Identities=16% Similarity=0.163 Sum_probs=26.1
Q ss_pred cCCCCCccccHHH-HHHH-hhchhhHHHHhhcCCCcchHH-HHHHHHHHH
Q 041368 30 PYFDADQGTTHFA-AVHK-VFGASNASKLLSRIPPHKRLD-AVVSLCYEA 76 (102)
Q Consensus 30 PyFpa~~~~~~F~-~vhk-vFG~snv~k~L~~~~~~~R~~-a~~Sl~yEA 76 (102)
|.|.++. .... ...+ .+....++..+..+..+.|.+ .+++|.-|+
T Consensus 9 P~F~wd~--~~l~~~l~~~~~~~G~LlG~~~~l~~~~~~~~~l~~l~~e~ 56 (82)
T PF13776_consen 9 PNFRWDS--SALEPLLAEVRLRQGRLLGKMSHLGFDLRQEAILDTLTAEI 56 (82)
T ss_pred CCCEEcH--HHHHHHHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHH
Confidence 7788774 2332 1111 223345777788888776654 466776665
No 19
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=21.07 E-value=1.5e+02 Score=22.65 Aligned_cols=40 Identities=15% Similarity=0.275 Sum_probs=31.4
Q ss_pred hchhhHHHHhhcCCCcchHHHHHHHHHHHhhcccCCCcccH
Q 041368 48 FGASNASKLLSRIPPHKRLDAVVSLCYEAMARTRDPIYGCV 88 (102)
Q Consensus 48 FG~snv~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPV~Gc~ 88 (102)
+|-.-|.++|+..+++++..+++.|.-+...=..|| ||.+
T Consensus 164 ~G~~vvq~~l~~~~~~~~~~l~~~l~~~~~~L~~d~-~Gn~ 203 (322)
T cd07920 164 YGCRVIQRCLEHCSEEQREPLLEEILEHALELVQDQ-FGNY 203 (322)
T ss_pred cccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCC-chhh
Confidence 577778888888888888888888888777777774 7764
No 20
>smart00542 FYRC "FY-rich" domain, C-terminal region. is sometimes closely juxtaposed with the N-terminal region (FYRN), but sometimes is far distant. Unknown function, but occurs frequently in chromatin-associated proteins.
Probab=20.90 E-value=61 Score=21.18 Aligned_cols=19 Identities=32% Similarity=0.628 Sum_probs=15.3
Q ss_pred Hhhchhh--HHHHhhcCCCcc
Q 041368 46 KVFGASN--ASKLLSRIPPHK 64 (102)
Q Consensus 46 kvFG~sn--v~k~L~~~~~~~ 64 (102)
.+||.++ |+++|+++|..+
T Consensus 51 ~mFGls~p~V~~lie~Lpga~ 71 (86)
T smart00542 51 DMFGLSSPAVVKLIEQLPGVH 71 (86)
T ss_pred HHhCCCcHHHHHHHHhCCCch
Confidence 5688775 899999999755
No 21
>cd09071 FAR_C C-terminal domain of fatty acyl CoA reductases. C-terminal domain of fatty acyl CoA reductases, a family of SDR-like proteins. SDRs or short-chain dehydrogenases/reductases are Rossmann-fold NAD(P)H-binding proteins. Many proteins in this FAR_C family may function as fatty acyl-CoA reductases (FARs), acting on medium and long chain fatty acids, and have been reported to be involved in diverse processes such as the biosynthesis of insect pheromones, plant cuticular wax production, and mammalian wax biosynthesis. In Arabidopsis thaliana, proteins with this particular architecture have also been identified as the MALE STERILITY 2 (MS2) gene product, which is implicated in male gametogenesis. Mutations in MS2 inhibit the synthesis of exine (sporopollenin), rendering plants unable to reduce pollen wall fatty acids to corresponding alcohols. The function of this C-terminal domain is unclear.
Probab=20.65 E-value=34 Score=21.69 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=18.0
Q ss_pred HhhchhhHHHHhhcCCCcchH
Q 041368 46 KVFGASNASKLLSRIPPHKRL 66 (102)
Q Consensus 46 kvFG~snv~k~L~~~~~~~R~ 66 (102)
-.|-..|+.++.+.+++++|+
T Consensus 45 w~F~~~n~~~L~~~l~~~Dr~ 65 (92)
T cd09071 45 WRFDNDNTRALWERLSEEDRE 65 (92)
T ss_pred EEeeCcHHHHHHHHCCHHHHH
Confidence 457889999999999988876
No 22
>PLN02721 threonine aldolase
Probab=20.24 E-value=2.1e+02 Score=21.71 Aligned_cols=49 Identities=14% Similarity=0.137 Sum_probs=30.0
Q ss_pred hhhHHHHhhcCCCcchHHHHHHHHHHHhhcccCCCcccHHHHHHHHHHHHhc
Q 041368 50 ASNASKLLSRIPPHKRLDAVVSLCYEAMARTRDPIYGCVGHIVALQQQVSIT 101 (102)
Q Consensus 50 ~snv~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPV~Gc~G~i~~Lq~ql~~l 101 (102)
+|.++++-.+.++.-.+.+++++.. + +..+..+|--..+..|+.+|.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~a~~~-~--~~~~~~~~~~~~~~~l~~~la~~ 52 (353)
T PLN02721 4 VSRVVDLRSDTVTKPTDAMRAAMAN-A--EVDDDVLGYDPTALRLEEEMAKI 52 (353)
T ss_pred hhhhhhhhcccccCCCHHHHHHHHh-c--cCCCcccCCCHHHHHHHHHHHHH
Confidence 4566777777666555667777643 2 33345566555677777777653
Done!