Query 041368
Match_columns 102
No_of_seqs 105 out of 283
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 10:32:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041368.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041368hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2z2q_B Coat protein gamma; wil 32.9 24 0.00082 20.4 1.8 19 83-101 20-38 (44)
2 1nov_D Nodamura virus coat pro 31.5 27 0.00091 20.2 1.8 19 83-101 20-38 (44)
3 1f4s_P Ethanol regulon transcr 30.0 39 0.0013 19.8 2.6 23 2-24 4-26 (65)
4 1urf_A Protein kinase C-like 1 29.3 44 0.0015 21.6 2.8 33 48-80 25-59 (81)
5 2jr2_A UPF0352 protein CPS_261 28.3 24 0.00081 22.7 1.4 21 52-72 40-60 (76)
6 1zme_C Proline utilization tra 25.7 39 0.0013 19.4 1.9 15 10-24 2-16 (70)
7 1lqb_D HIF-1 alpha, hypoxia-in 22.4 23 0.00079 19.4 0.4 10 27-36 13-22 (34)
8 1cld_A CD2-LAC9; zinc-binding 22.1 44 0.0015 18.7 1.6 20 6-25 6-25 (61)
9 3cxj_A Uncharacterized protein 21.8 38 0.0013 24.3 1.6 27 54-80 66-92 (165)
10 3coq_A Regulatory protein GAL4 21.8 51 0.0017 19.7 2.0 13 11-23 3-15 (89)
11 1d66_A Protein (GAL4); protein 21.7 54 0.0018 18.4 2.0 20 6-25 5-24 (66)
12 1pyi_A Protein (pyrimidine pat 21.6 55 0.0019 19.9 2.2 16 9-24 4-19 (96)
13 2p9x_A Hypothetical protein PH 21.1 29 0.001 23.2 0.8 13 38-50 46-59 (99)
No 1
>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D
Probab=32.90 E-value=24 Score=20.43 Aligned_cols=19 Identities=21% Similarity=0.114 Sum_probs=15.7
Q ss_pred CCcccHHHHHHHHHHHHhc
Q 041368 83 PIYGCVGHIVALQQQVSIT 101 (102)
Q Consensus 83 PV~Gc~G~i~~Lq~ql~~l 101 (102)
-|.|.+|+|...-++|.+|
T Consensus 20 ~iPGPVG~~asGi~~l~~l 38 (44)
T 2z2q_B 20 NIPGPIGVAASGISGLSAL 38 (44)
T ss_pred cCCCchhHHHHhHHHHHHH
Confidence 4889999999988888664
No 2
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=31.48 E-value=27 Score=20.24 Aligned_cols=19 Identities=26% Similarity=0.137 Sum_probs=15.6
Q ss_pred CCcccHHHHHHHHHHHHhc
Q 041368 83 PIYGCVGHIVALQQQVSIT 101 (102)
Q Consensus 83 PV~Gc~G~i~~Lq~ql~~l 101 (102)
-|.|.+|++...-++|..|
T Consensus 20 ~iPGPVG~~asGi~gl~~l 38 (44)
T 1nov_D 20 TIPGPVGVAATGIKGIIET 38 (44)
T ss_pred cCCCchhHHHHhHHHHHHH
Confidence 4889999999888887654
No 3
>1f4s_P Ethanol regulon transcriptional factor; protein-DNA complex, zinc binuclear cluster protein, transcription/DNA complex; HET: DNA; NMR {Emericella nidulans} SCOP: g.38.1.1 PDB: 1f5e_P* 2alc_A 3alc_A
Probab=30.05 E-value=39 Score=19.81 Aligned_cols=23 Identities=17% Similarity=0.478 Sum_probs=17.2
Q ss_pred CCCCCCCCCCChhhhhhhcCCCC
Q 041368 2 MMSANNGGGPCGACKFLRRKCVK 24 (102)
Q Consensus 2 ~~~~~~~~~~CaaCk~lRr~C~~ 24 (102)
+........+|-.||.-+.+|..
T Consensus 4 ~~~r~r~~~ACd~CR~rK~kCd~ 26 (65)
T 1f4s_P 4 ADTRRRQNHSCDPCRKGKRRCDA 26 (65)
T ss_dssp TTTSCCSSCCCHHHHHHTCCCSC
T ss_pred CCCCCccCcchHHHhhhhccCCC
Confidence 33445567889999998888876
No 4
>1urf_A Protein kinase C-like 1; transferase, G-protein, HR1 domain, helical, coiled coil, ATP-binding, serine/threonine-protein kinase, phosphorylation; NMR {Homo sapiens} SCOP: a.2.6.1 PDB: 2rmk_B*
Probab=29.30 E-value=44 Score=21.59 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=25.8
Q ss_pred hchhhHHHHhhcCCCcchHH--HHHHHHHHHhhcc
Q 041368 48 FGASNASKLLSRIPPHKRLD--AVVSLCYEAMART 80 (102)
Q Consensus 48 FG~snv~k~L~~~~~~~R~~--a~~Sl~yEA~~R~ 80 (102)
=|+.|+++++.+-+..+|.- .++.++.|+...+
T Consensus 25 ~GAENmi~~y~~g~~~drKlLaeAQqmL~DSk~KI 59 (81)
T 1urf_A 25 QGAENMIQTYSNGSTKDRKLLLTAQQMLQDSKTKI 59 (81)
T ss_dssp HHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHH
Confidence 49999999999998888753 4667777776653
No 5
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=28.29 E-value=24 Score=22.67 Aligned_cols=21 Identities=19% Similarity=0.528 Sum_probs=16.3
Q ss_pred hHHHHhhcCCCcchHHHHHHH
Q 041368 52 NASKLLSRIPPHKRLDAVVSL 72 (102)
Q Consensus 52 nv~k~L~~~~~~~R~~a~~Sl 72 (102)
-++++|.++++.+|..++++.
T Consensus 40 ~vTnlln~V~~~qR~~iAe~F 60 (76)
T 2jr2_A 40 AVTNIIAQVPESKRVAVVDNF 60 (76)
T ss_dssp HHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHH
Confidence 356778899999998877654
No 6
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=25.65 E-value=39 Score=19.39 Aligned_cols=15 Identities=27% Similarity=0.532 Sum_probs=8.7
Q ss_pred CCChhhhhhhcCCCC
Q 041368 10 GPCGACKFLRRKCVK 24 (102)
Q Consensus 10 ~~CaaCk~lRr~C~~ 24 (102)
.+|..|+..+-+|..
T Consensus 2 ~aC~~Cr~rK~kCd~ 16 (70)
T 1zme_C 2 VACLSCRKRHIKCPG 16 (70)
T ss_dssp CCCHHHHHHTCCCCC
T ss_pred cchHHHHhccCCCCC
Confidence 456666666666653
No 7
>1lqb_D HIF-1 alpha, hypoxia-inducible factor 1 alpha; protein-peptide complex, tumor suppressor, cancer, proteosomal degradation, ubiquitin; 2.00A {Homo sapiens}
Probab=22.35 E-value=23 Score=19.45 Aligned_cols=10 Identities=40% Similarity=0.886 Sum_probs=8.1
Q ss_pred ccCcCCCCCc
Q 041368 27 VFAPYFDADQ 36 (102)
Q Consensus 27 ~laPyFpa~~ 36 (102)
+||||.|-++
T Consensus 13 mLAPYIpMdd 22 (34)
T 1lqb_D 13 MLAPYIPMDD 22 (34)
T ss_pred HhcCccccCc
Confidence 5899999664
No 8
>1cld_A CD2-LAC9; zinc-binding domain, transcription regulation; NMR {Kluyveromyces lactis} SCOP: g.38.1.1
Probab=22.14 E-value=44 Score=18.67 Aligned_cols=20 Identities=30% Similarity=0.547 Sum_probs=11.9
Q ss_pred CCCCCCChhhhhhhcCCCCC
Q 041368 6 NNGGGPCGACKFLRRKCVKG 25 (102)
Q Consensus 6 ~~~~~~CaaCk~lRr~C~~~ 25 (102)
.....+|..|+..+-+|...
T Consensus 6 ~r~~~aC~~Cr~rk~kCd~~ 25 (61)
T 1cld_A 6 EVMHQACDACRKKKWKCSKT 25 (61)
T ss_dssp ----CCCHHHHHSCCCCCCC
T ss_pred cccchHHHHHHhcCCCcCCc
Confidence 44567788888877777653
No 9
>3cxj_A Uncharacterized protein; PSI-II, structural genomics structure initiative; 2.80A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=21.82 E-value=38 Score=24.34 Aligned_cols=27 Identities=7% Similarity=0.033 Sum_probs=23.2
Q ss_pred HHHhhcCCCcchHHHHHHHHHHHhhcc
Q 041368 54 SKLLSRIPPHKRLDAVVSLCYEAMART 80 (102)
Q Consensus 54 ~k~L~~~~~~~R~~a~~Sl~yEA~~R~ 80 (102)
.+.|.++++++|.+.+.+|.|+....-
T Consensus 66 ~~~L~~l~~~eR~~fl~~i~~~Ll~~~ 92 (165)
T 3cxj_A 66 QAGIRALSMEKRTEFIWKVRFTLNRFG 92 (165)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 367899999999999999999987654
No 10
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=21.81 E-value=51 Score=19.67 Aligned_cols=13 Identities=31% Similarity=1.009 Sum_probs=7.2
Q ss_pred CChhhhhhhcCCC
Q 041368 11 PCGACKFLRRKCV 23 (102)
Q Consensus 11 ~CaaCk~lRr~C~ 23 (102)
+|..||..+-+|.
T Consensus 3 aC~~Cr~rK~kCd 15 (89)
T 3coq_A 3 ACDICRLKKLKCS 15 (89)
T ss_dssp CCHHHHHHTCCCC
T ss_pred cchhhhccCCCCC
Confidence 4555555555554
No 11
>1d66_A Protein (GAL4); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.70A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1aw6_A
Probab=21.68 E-value=54 Score=18.40 Aligned_cols=20 Identities=25% Similarity=0.622 Sum_probs=13.7
Q ss_pred CCCCCCChhhhhhhcCCCCC
Q 041368 6 NNGGGPCGACKFLRRKCVKG 25 (102)
Q Consensus 6 ~~~~~~CaaCk~lRr~C~~~ 25 (102)
.....+|..|+..+-+|...
T Consensus 5 ~r~~~aC~~Cr~rK~kCd~~ 24 (66)
T 1d66_A 5 SSIEQACDICRLKKLKCSKE 24 (66)
T ss_dssp ---CCCCHHHHHHTCCCCCC
T ss_pred CcCCchHHHHHhCcCcCCCc
Confidence 34567899999888888754
No 12
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=21.64 E-value=55 Score=19.94 Aligned_cols=16 Identities=25% Similarity=0.744 Sum_probs=11.4
Q ss_pred CCCChhhhhhhcCCCC
Q 041368 9 GGPCGACKFLRRKCVK 24 (102)
Q Consensus 9 ~~~CaaCk~lRr~C~~ 24 (102)
..+|..||..+-+|..
T Consensus 4 ~~aC~~Cr~rK~kCd~ 19 (96)
T 1pyi_A 4 RTACKRCRLKKIKCDQ 19 (96)
T ss_dssp CCCCHHHHHHTCCCCC
T ss_pred cchhHHHhccCcCcCC
Confidence 4678888877777754
No 13
>2p9x_A Hypothetical protein PH0832; pyrococcus horikoshii OT3, NPPSFA, national project on prote structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=21.12 E-value=29 Score=23.20 Aligned_cols=13 Identities=46% Similarity=0.818 Sum_probs=11.3
Q ss_pred ccHH-HHHHHhhch
Q 041368 38 TTHF-AAVHKVFGA 50 (102)
Q Consensus 38 ~~~F-~~vhkvFG~ 50 (102)
|++| ..|.++||.
T Consensus 46 P~kFkeaV~~LFGE 59 (99)
T 2p9x_A 46 PQKFKEAVSKLFGE 59 (99)
T ss_dssp HHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHH
Confidence 6899 599999995
Done!