Query 041368
Match_columns 102
No_of_seqs 105 out of 283
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 10:32:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041368.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/041368hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1zmec1 g.38.1.1 (C:31-66) PUT 48.2 5.2 0.00038 20.5 1.9 16 9-24 1-16 (36)
2 d1pyia1 g.38.1.1 (A:30-71) PPR 47.9 5.7 0.00042 20.7 2.2 17 9-25 2-18 (42)
3 d2otaa1 a.284.1.1 (A:7-68) Hyp 45.5 6.8 0.00049 22.8 2.4 20 53-72 35-54 (62)
4 d3coqa1 g.38.1.1 (A:8-48) Gal4 45.2 5.7 0.00042 20.5 1.9 15 10-24 2-16 (41)
5 d3alca_ g.38.1.1 (A:) Ethanol 42.9 8.7 0.00063 21.4 2.6 19 5-23 7-25 (65)
6 d1clda_ g.38.1.1 (A:) CD2-Lac9 41.4 6.5 0.00048 19.5 1.6 16 10-25 1-16 (33)
7 d1qp9a1 g.38.1.1 (A:55-97) Hap 28.9 17 0.0012 18.7 2.1 19 7-25 5-23 (43)
8 d1wyua1 c.67.1.7 (A:1-437) Gly 27.8 9.7 0.00071 28.8 1.3 34 30-65 2-35 (437)
9 d1urfa_ a.2.6.1 (A:) Protein k 26.9 24 0.0018 20.9 2.8 32 48-79 25-58 (81)
10 d1nbja_ g.3.3.2 (A:) Cycloviol 22.1 18 0.0013 17.9 1.2 10 22-31 1-10 (30)
No 1
>d1zmec1 g.38.1.1 (C:31-66) PUT3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=48.21 E-value=5.2 Score=20.45 Aligned_cols=16 Identities=25% Similarity=0.507 Sum_probs=12.0
Q ss_pred CCCChhhhhhhcCCCC
Q 041368 9 GGPCGACKFLRRKCVK 24 (102)
Q Consensus 9 ~~~CaaCk~lRr~C~~ 24 (102)
+.+|..||..+.+|..
T Consensus 1 S~aC~~Cr~rK~kCd~ 16 (36)
T d1zmec1 1 SVACLSCRKRHIKCPG 16 (36)
T ss_dssp CCCCHHHHHHTCCCCC
T ss_pred CccHHHHHHhCCcCCC
Confidence 3578888888888864
No 2
>d1pyia1 g.38.1.1 (A:30-71) PPR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=47.87 E-value=5.7 Score=20.71 Aligned_cols=17 Identities=24% Similarity=0.684 Sum_probs=13.4
Q ss_pred CCCChhhhhhhcCCCCC
Q 041368 9 GGPCGACKFLRRKCVKG 25 (102)
Q Consensus 9 ~~~CaaCk~lRr~C~~~ 25 (102)
..+|..||..+.+|...
T Consensus 2 r~aC~~Cr~rK~kCd~~ 18 (42)
T d1pyia1 2 RTACKRCRLKKIKCDQE 18 (42)
T ss_dssp CCCCHHHHHHTCCCCCC
T ss_pred cHHHHHHHHhCcCCCCc
Confidence 46788888888888754
No 3
>d2otaa1 a.284.1.1 (A:7-68) Hypothetical protein CPS2611 {Colwellia psychrerythraea [TaxId: 28229]}
Probab=45.48 E-value=6.8 Score=22.84 Aligned_cols=20 Identities=20% Similarity=0.559 Sum_probs=16.0
Q ss_pred HHHHhhcCCCcchHHHHHHH
Q 041368 53 ASKLLSRIPPHKRLDAVVSL 72 (102)
Q Consensus 53 v~k~L~~~~~~~R~~a~~Sl 72 (102)
++++|.++|+.+|..++++.
T Consensus 35 vTnii~~V~~~qR~~iAe~F 54 (62)
T d2otaa1 35 VTNIIAQVPESKRVAVVDNF 54 (62)
T ss_dssp HHHHHTTSCGGGHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 56677889999999887764
No 4
>d3coqa1 g.38.1.1 (A:8-48) Gal4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=45.17 E-value=5.7 Score=20.47 Aligned_cols=15 Identities=33% Similarity=0.924 Sum_probs=12.6
Q ss_pred CCChhhhhhhcCCCC
Q 041368 10 GPCGACKFLRRKCVK 24 (102)
Q Consensus 10 ~~CaaCk~lRr~C~~ 24 (102)
.+|..||..+.+|..
T Consensus 2 ~AC~~Cr~rK~KCd~ 16 (41)
T d3coqa1 2 QACDICRLKKLKCSK 16 (41)
T ss_dssp CCCHHHHHHTCCCCC
T ss_pred cchHHHHHhCcccCC
Confidence 589999999999975
No 5
>d3alca_ g.38.1.1 (A:) Ethanol regulon transcriptional activator ALCR DNA-binding domain {Emericella nidulans, also known as Aspergillus nidulans [TaxId: 162425]}
Probab=42.87 E-value=8.7 Score=21.42 Aligned_cols=19 Identities=21% Similarity=0.623 Sum_probs=15.5
Q ss_pred CCCCCCCChhhhhhhcCCC
Q 041368 5 ANNGGGPCGACKFLRRKCV 23 (102)
Q Consensus 5 ~~~~~~~CaaCk~lRr~C~ 23 (102)
..-...+|-.||..+.+|.
T Consensus 7 r~R~~~AC~~CR~rK~kCd 25 (65)
T d3alca_ 7 RRRQNHSCDPCRKGKRRCD 25 (65)
T ss_dssp SSSSCCSCHHHHHTTCCCS
T ss_pred CcCcCHhHHHHHhccccCC
Confidence 3445779999999999995
No 6
>d1clda_ g.38.1.1 (A:) CD2-Lac9 {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}
Probab=41.39 E-value=6.5 Score=19.48 Aligned_cols=16 Identities=38% Similarity=0.812 Sum_probs=13.4
Q ss_pred CCChhhhhhhcCCCCC
Q 041368 10 GPCGACKFLRRKCVKG 25 (102)
Q Consensus 10 ~~CaaCk~lRr~C~~~ 25 (102)
.+|..||..+.+|+.+
T Consensus 1 rAC~~Cr~rK~kCd~~ 16 (33)
T d1clda_ 1 QACDACRKKKWKCSKT 16 (33)
T ss_dssp CCCHHHHHSCCCCCCC
T ss_pred CChHHHHHhcCccCcc
Confidence 4799999999999754
No 7
>d1qp9a1 g.38.1.1 (A:55-97) Hap1 (Cyp1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.91 E-value=17 Score=18.75 Aligned_cols=19 Identities=26% Similarity=0.314 Sum_probs=15.5
Q ss_pred CCCCCChhhhhhhcCCCCC
Q 041368 7 NGGGPCGACKFLRRKCVKG 25 (102)
Q Consensus 7 ~~~~~CaaCk~lRr~C~~~ 25 (102)
..+.+|..|+-.+-+|+..
T Consensus 5 r~~~aC~~Cr~rKikCd~~ 23 (43)
T d1qp9a1 5 RIPLGCTICRKRKVKCDKL 23 (43)
T ss_dssp CCCSSCHHHHHHTSCCCCC
T ss_pred CcccchHHHHhhccCcCCc
Confidence 3567899999999999754
No 8
>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}
Probab=27.76 E-value=9.7 Score=28.85 Aligned_cols=34 Identities=15% Similarity=0.300 Sum_probs=28.1
Q ss_pred cCCCCCccccHHHHHHHhhchhhHHHHhhcCCCcch
Q 041368 30 PYFDADQGTTHFAAVHKVFGASNASKLLSRIPPHKR 65 (102)
Q Consensus 30 PyFpa~~~~~~F~~vhkvFG~snv~k~L~~~~~~~R 65 (102)
||.|..+ ++.+..-+..|+++|-.++.++|++.|
T Consensus 2 ~y~p~s~--~d~~~mL~~iG~~s~~dl~~~IP~~~~ 35 (437)
T d1wyua1 2 DYTPHTE--EEIREMLRRVGAASLEDLFAHLPKEIL 35 (437)
T ss_dssp CCCCCCH--HHHHHHHHHHTCSSTGGGGTTSCGGGS
T ss_pred CCCCcCH--HHHHHHHHHcCCCCHHHHHHhccHHHh
Confidence 6899874 678889999999999999988876543
No 9
>d1urfa_ a.2.6.1 (A:) Protein kinase c-like 1, pkn/prk1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.88 E-value=24 Score=20.93 Aligned_cols=32 Identities=16% Similarity=0.117 Sum_probs=23.5
Q ss_pred hchhhHHHHhhcCCCcchHH--HHHHHHHHHhhc
Q 041368 48 FGASNASKLLSRIPPHKRLD--AVVSLCYEAMAR 79 (102)
Q Consensus 48 FG~snv~k~L~~~~~~~R~~--a~~Sl~yEA~~R 79 (102)
=|+.||+++++.-...+|.. -+++++-|++.+
T Consensus 25 eGaEnm~k~~~~~~~~DrK~l~eaq~~l~eS~~K 58 (81)
T d1urfa_ 25 QGAENMIQTYSNGSTKDRKLLLTAQQMLQDSKTK 58 (81)
T ss_dssp HHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCcccHHHHHHHHHHHHHHHHH
Confidence 48999999999876666643 466777777655
No 10
>d1nbja_ g.3.3.2 (A:) Cycloviolacin O1 {Plant (Viola odorata) [TaxId: 97441]}
Probab=22.15 E-value=18 Score=17.91 Aligned_cols=10 Identities=40% Similarity=1.315 Sum_probs=8.1
Q ss_pred CCCCCccCcC
Q 041368 22 CVKGCVFAPY 31 (102)
Q Consensus 22 C~~~C~laPy 31 (102)
|.++|+..|+
T Consensus 1 caescv~ipc 10 (30)
T d1nbja_ 1 CAESCVYIPC 10 (30)
T ss_dssp CCCCCSSSCC
T ss_pred CccceEEEee
Confidence 7788888876
Done!