BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041371
(437 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N9V|A Chain A, Crystal Structure Of Inpp5b
pdb|3N9V|B Chain B, Crystal Structure Of Inpp5b
Length = 313
Score = 187 bits (474), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 140/241 (58%), Gaps = 13/241 (5%)
Query: 148 RYCLAASKQMVGIFLCIWVRADLYKHISNLKVSSVGRGIMGYLGNKGSISISMTLHNTTF 207
+Y ++VGI L ++V+ + +IS ++ +VG GIMG +GNKG ++I HNT+
Sbjct: 75 KYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSI 134
Query: 208 CFVGTHLASGEKEGDEIRRNSDVAQILKRTRFSHSYIDPAQPLPPETILEHDVIFWLGDL 267
C V +HLA+ +E + RRN D I R +F P LPP TI HDVI WLGDL
Sbjct: 135 CVVNSHLAAHIEEYE--RRNQDYKDICSRMQFCQ----PDPSLPPLTISNHDVILWLGDL 188
Query: 268 NYRLAN-GYGDTHEQLKRNDWQALLEKDQLRLEQRAGRVFEGWEEGDIYFPPTYKYITNS 326
NYR+ + ++ D+Q L DQL+++ A VFEG+ EG++ F PTYKY T S
Sbjct: 189 NYRIEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGS 248
Query: 327 DHYVVQTSKSKEKRRTPAWCDRILWKGEGLKQLCYVRGES-RFSDHRPVYSFFSVQVNSA 385
D + + EK R PAWCDRILWKG+ + QL Y + + SDH+PV S F + V
Sbjct: 249 DDW-----DTSEKCRAPAWCDRILWKGKNITQLSYQSHMALKTSDHKPVSSVFDIGVRVV 303
Query: 386 N 386
N
Sbjct: 304 N 304
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
Query: 2 FVGTWNVGGKSPHEDLNLRDWLKSTAPA-DIYVLGFQEI 39
F GT+NV G+SP E L L WL + A D+Y +GFQE+
Sbjct: 8 FAGTYNVNGQSPKECLRL--WLSNGIQAPDVYCVGFQEL 44
>pdb|3MTC|A Chain A, Crystal Structure Of Inpp5b In Complex With
Phosphatidylinositol 4- Phosphate
Length = 313
Score = 185 bits (469), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 100/237 (42%), Positives = 139/237 (58%), Gaps = 13/237 (5%)
Query: 148 RYCLAASKQMVGIFLCIWVRADLYKHISNLKVSSVGRGIMGYLGNKGSISISMTLHNTTF 207
+Y ++VGI L ++V+ + +IS ++ +VG GIMG +GNKG ++I HNT+
Sbjct: 78 KYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSI 137
Query: 208 CFVGTHLASGEKEGDEIRRNSDVAQILKRTRFSHSYIDPAQPLPPETILEHDVIFWLGDL 267
C V +HLA+ +E + RRN D I R +F P LPP TI HDVI WLGDL
Sbjct: 138 CVVNSHLAAHIEEYE--RRNQDYKDICSRMQFCQ----PDPSLPPLTISNHDVILWLGDL 191
Query: 268 NYRLAN-GYGDTHEQLKRNDWQALLEKDQLRLEQRAGRVFEGWEEGDIYFPPTYKYITNS 326
NYR+ + ++ D+Q L DQL+++ A VFEG+ EG++ F PTYKY T S
Sbjct: 192 NYRIEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGS 251
Query: 327 DHYVVQTSKSKEKRRTPAWCDRILWKGEGLKQLCYVRGES-RFSDHRPVYSFFSVQV 382
D + + EK R PAWCDRILWKG+ + QL Y + + SDH+PV S F + V
Sbjct: 252 DDW-----DTSEKCRAPAWCDRILWKGKNITQLSYQSHMALKTSDHKPVSSVFDIGV 303
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/39 (51%), Positives = 26/39 (66%), Gaps = 3/39 (7%)
Query: 2 FVGTWNVGGKSPHEDLNLRDWLKSTAPA-DIYVLGFQEI 39
F GT+NV G+SP E L L WL + A D+Y +GFQE+
Sbjct: 11 FAGTYNVNGQSPKECLRL--WLSNGIQAPDVYCVGFQEL 47
>pdb|1I9Y|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin
pdb|1I9Z|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin In Complex With
Inositol (1,4)-Bisphosphate And Calcium Ion
Length = 347
Score = 132 bits (332), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 118/245 (48%), Gaps = 18/245 (7%)
Query: 149 YCLAASKQMVGIFLCIWVRADLYKHISNLKVSSVGRGIMGYLGNKGSISISMTLHNTTFC 208
Y S Q+VG L I+ + I N++ + G+ G GNKG+++I +T C
Sbjct: 102 YVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLC 161
Query: 209 FVGTHLASGEKEGDEIRRNSDVAQILKRTRFSHSYIDPAQPLPPETILEHDVIFWLGDLN 268
F+ +HLA+G DE R+ D I RF +I HD + W GD N
Sbjct: 162 FITSHLAAGYTNYDE--RDHDYRTIASGLRFRRG----------RSIFNHDYVVWFGDFN 209
Query: 269 YRLANGYGDTHEQLKRNDWQALLEKDQLRLEQRAGRVFEGWEEGDIYFPPTYKYITNSDH 328
YR++ Y + + + L E DQL + G+VF + E I FPPTYK+ +D
Sbjct: 210 YRISLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDI 269
Query: 329 YVVQTSKSKEKRRTPAWCDRILWKGEGLKQLCYVRGESRFSDHRPVYSFFSVQVNSANKP 388
Y + +K R PAW DRIL++GE L Y +SDHRP+Y+ + + ++
Sbjct: 270 Y-----DTSDKHRVPAWTDRILYRGE-LVPHSYQSVPLYYSDHRPIYATYEANIVKVDRE 323
Query: 389 KPRTI 393
K + +
Sbjct: 324 KKKIL 328
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 42/73 (57%), Gaps = 5/73 (6%)
Query: 2 FVGTWNVGGKSPHEDLNLRDWL--KSTAPADIYVLGFQEIVPLNAGNVLGAEDNGPAAKW 59
FV ++N+ G S L +WL ++T ADIYV+GFQEIV L V+ A D +W
Sbjct: 28 FVASYNLNGCSA--TTKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISA-DPAKRREW 84
Query: 60 LSLIRQALNGNKT 72
S +++ LNG T
Sbjct: 85 ESCVKRLLNGKCT 97
>pdb|2XSW|A Chain A, Crystal Structure Of Human Inpp5e
pdb|2XSW|B Chain B, Crystal Structure Of Human Inpp5e
Length = 357
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 124/251 (49%), Gaps = 16/251 (6%)
Query: 149 YCLAASKQMVGIFLCIWVRADLYKHISNLKVSSVGRGIMGYLGNKGSISISMTLHNTTFC 208
Y L +S +++ +++R DL S ++ S+V I+ + KG++ IS T T+F
Sbjct: 87 YVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFL 146
Query: 209 FVGTHLASGEKEGDEIRRNSDVAQILKRTRFSHSYID--PAQPLPPETILEHDVIFWLGD 266
F+ +H SG+ G R D + ++ + D P + + D +FW GD
Sbjct: 147 FITSHFTSGD--GKVAERLLDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGD 204
Query: 267 LNYRLANGYGDTHEQLKRN---DWQALLEKDQLRLEQRAGRVFEGWEEGDIYFPPTYKYI 323
N+RL+ G L + D ALL+ DQL E R G +F+G++E DI+F P+YK+
Sbjct: 205 FNFRLSGGRTVVDALLCQGLVVDVPALLQHDQLIREMRKGSIFKGFQEPDIHFLPSYKFD 264
Query: 324 TNSDHYVVQTSKSKEKRRTPAWCDRILWKGEGLKQLCYVRGES----RFSDHRPVYSFFS 379
D Y S K+RTP++ DR+L++ +C V S + SDHRPVY F
Sbjct: 265 IGKDTY-----DSTSKQRTPSYTDRVLYRSRHKGDICPVSYSSCPGIKTSDHRPVYGLFR 319
Query: 380 VQVNSANKPKP 390
V+V P
Sbjct: 320 VKVRPGRDNIP 330
>pdb|3NR8|B Chain B, Crystal Structure Of Human Ship2
pdb|3NR8|A Chain A, Crystal Structure Of Human Ship2
pdb|4A9C|A Chain A, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
pdb|4A9C|B Chain B, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
Length = 316
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 117/238 (49%), Gaps = 13/238 (5%)
Query: 153 ASKQMVGIFLCIWVRADLYKHISNLKVSSVGRGIMGYLGNKGSISISMTLHNTTFCFVGT 212
A + + I + + V+ + IS++ SSV GI LGNKG++ +S + T+F FV
Sbjct: 85 AMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNC 144
Query: 213 HLASGEKEGDEIRRNSDVAQILKRTRFSHSYIDPAQPLPPETILEHDVIFWLGDLNYRLA 272
HL SG ++ RRN + IL+ ++ + L +FW GDLNYRL
Sbjct: 145 HLTSGNEK--TARRNQNYLDILRLLSLGDRQLNAF-----DISLRFTHLFWFGDLNYRLD 197
Query: 273 NGYGDTHEQLKRNDWQALLEKDQLRLEQRAGRVFEGWEEGDIYFPPTYKYITNS-DHYVV 331
+ + R +++ LL DQL LE+ +VF + E +I FPPTY+Y S D Y
Sbjct: 198 MDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYERGSRDTYAW 257
Query: 332 QTSKSKEKR-RTPAWCDRILWKGEGLKQ-LCYVRG---ESRFSDHRPVYSFFSVQVNS 384
K R P+WCDRILWK +C G + SDH PV+ F V V S
Sbjct: 258 HKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIVTSDHSPVFGTFEVGVTS 315
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 33/79 (41%), Gaps = 27/79 (34%)
Query: 1 TFVGTWNVGGKSPHEDLNLRDWLKS------------TAPADIYVLGFQEIVPLNAGNVL 48
F+GTWN+G P + N+ W S T P DIYV G QE N +
Sbjct: 10 VFIGTWNMGSVPPPK--NVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQE-------NSV 60
Query: 49 GAEDNGPAAKWLSLIRQAL 67
G + WL L+R L
Sbjct: 61 GDRE------WLDLLRGGL 73
>pdb|1NTF|A Chain A, Crystal Structure Of Cimex Nitrophorin
pdb|1Y21|A Chain A, Crystal Structure Of Cimex Nitrophorin No Complex
pdb|1SI6|X Chain X, Crystal Structure Of Cimex Nitrophorin Complex With Co
pdb|1YJH|A Chain A, Crystal Structure Of Cimex Nitrophorin Ferrous No Complex
pdb|2IMQ|X Chain X, Crystal Structure Of Ferrous Cimex Nitrophorin
Length = 282
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/193 (27%), Positives = 88/193 (45%), Gaps = 30/193 (15%)
Query: 194 GSISISMTLHNTTFCFVGTHLASGEKEGDEIRRNSDVAQILKRTRFSHSYIDPAQPLPPE 253
G I S T++N F F + ++ + + D TR +S D
Sbjct: 116 GGIVTSFTIYNKRFSFTTSRMSDEDVTSTNTKYAYD-------TRLDYSKKDDPS----- 163
Query: 254 TILEHDVIFWLGDLNYRLANGYGDTHEQLKRNDWQALLEKDQLRLEQRAGRVFEGWEEGD 313
D +FW+GDLN R+ + +N+ L+ DQL+ + + ++F+GW E
Sbjct: 164 -----DFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLK-KAKEQKLFDGWTEPQ 217
Query: 314 IYFPPTYKYITNSDHYVVQTSKSKEKRRTPAWCDRILWK---GEGLKQLCY-VRGESRFS 369
+ F PTYK+ N+D Y + TP+W DR L+K G+ ++ L Y + +
Sbjct: 218 VTFKPTYKFKPNTDEY--------DLSATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQT 269
Query: 370 DHRPVYSFFSVQV 382
+HRPV + F V +
Sbjct: 270 EHRPVLAKFRVTL 282
>pdb|1QO7|A Chain A, Structure Of Aspergillus Niger Epoxide Hydrolase
pdb|1QO7|B Chain B, Structure Of Aspergillus Niger Epoxide Hydrolase
pdb|3G0I|A Chain A, Complex Of Aspergillus Niger Epoxide Hydrolase With
Valpromide (2-Propylpentanamide)
pdb|3G0I|B Chain B, Complex Of Aspergillus Niger Epoxide Hydrolase With
Valpromide (2-Propylpentanamide)
Length = 394
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 248 QPLPPETILEHDVIFWLGDLNYRLANGYGDTHEQLKRNDWQALLEKD 294
+PLP ETILE ++WL + R + Y +T + +L+K+
Sbjct: 285 KPLPSETILEMVSLYWLTESFPRAIHTYRETTPTASAPNGATMLQKE 331
>pdb|1VGY|A Chain A, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
pdb|1VGY|B Chain B, Crystal Structure Of Succinyl Diaminopimelate
Desuccinylase
Length = 393
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 307 EGWEEGDIYFPPTYKYITN 325
E W+EG+ YFPPT I+N
Sbjct: 221 EVWDEGNEYFPPTSFQISN 239
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,627,970
Number of Sequences: 62578
Number of extensions: 521368
Number of successful extensions: 949
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 915
Number of HSP's gapped (non-prelim): 19
length of query: 437
length of database: 14,973,337
effective HSP length: 102
effective length of query: 335
effective length of database: 8,590,381
effective search space: 2877777635
effective search space used: 2877777635
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)