Query 041371
Match_columns 437
No_of_seqs 260 out of 1094
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 06:25:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041371.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/041371hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03191 Type I inositol-1,4,5 100.0 1E-101 2E-106 812.6 30.2 384 1-394 110-605 (621)
2 KOG0566 Inositol-1,4,5-triphos 100.0 7.1E-93 1.5E-97 761.3 21.7 304 1-397 539-848 (1080)
3 smart00128 IPPc Inositol polyp 100.0 1.1E-81 2.3E-86 631.0 27.2 294 1-386 5-310 (310)
4 COG5411 Phosphatidylinositol 5 100.0 3.1E-69 6.7E-74 545.8 17.9 306 1-398 32-344 (460)
5 PTZ00312 inositol-1,4,5-tripho 100.0 1.4E-32 3E-37 267.2 10.6 174 189-378 64-356 (356)
6 KOG0565 Inositol polyphosphate 99.9 1E-27 2.2E-32 215.3 12.2 142 148-294 2-145 (145)
7 KOG1976 Inositol polyphosphate 99.8 1.1E-19 2.4E-24 177.6 5.3 172 190-381 154-389 (391)
8 PF03372 Exo_endo_phos: Endonu 98.9 2.5E-10 5.5E-15 105.5 -0.1 99 158-275 72-173 (249)
9 PRK05421 hypothetical protein; 98.8 1.7E-07 3.7E-12 92.2 15.0 59 192-269 134-193 (263)
10 PRK11756 exonuclease III; Prov 98.5 1.1E-06 2.4E-11 86.1 11.6 65 192-270 88-155 (268)
11 TIGR00633 xth exodeoxyribonucl 98.4 4.7E-06 1E-10 80.1 13.1 34 2-39 2-36 (255)
12 PRK13911 exodeoxyribonuclease 98.3 1.4E-05 3.1E-10 78.4 15.1 35 2-39 2-36 (250)
13 TIGR03395 sphingomy sphingomye 98.3 9.2E-06 2E-10 81.1 13.4 147 189-377 117-282 (283)
14 PTZ00297 pantothenate kinase; 97.8 0.00054 1.2E-08 81.8 18.0 69 191-269 131-206 (1452)
15 TIGR00195 exoDNase_III exodeox 97.8 0.00029 6.4E-09 68.4 13.1 34 2-39 2-35 (254)
16 KOG2756 Predicted Mg2+-depende 97.4 0.00093 2E-08 66.0 9.9 62 198-273 197-258 (349)
17 smart00476 DNaseIc deoxyribonu 97.3 0.005 1.1E-07 61.6 13.9 57 195-271 129-189 (276)
18 COG3568 ElsH Metal-dependent h 97.3 0.0019 4.2E-08 63.8 10.2 61 192-273 118-186 (259)
19 PLN03144 Carbon catabolite rep 96.6 0.092 2E-06 57.9 17.1 62 206-286 418-480 (606)
20 COG0708 XthA Exonuclease III [ 95.9 0.018 3.9E-07 57.1 6.3 33 3-39 3-35 (261)
21 PRK15251 cytolethal distending 95.5 0.16 3.5E-06 50.7 11.5 55 191-268 140-194 (271)
22 PF14529 Exo_endo_phos_2: Endo 94.4 0.068 1.5E-06 44.9 4.8 33 343-375 86-119 (119)
23 KOG3873 Sphingomyelinase famil 93.1 0.77 1.7E-05 47.6 10.3 202 153-387 74-299 (422)
24 KOG2338 Transcriptional effect 87.0 1.2 2.6E-05 47.8 5.9 95 162-270 204-304 (495)
25 COG3021 Uncharacterized protei 72.9 1.9 4E-05 44.0 1.5 60 191-269 173-233 (309)
26 PF08002 DUF1697: Protein of u 44.3 6.7 0.00015 35.2 -0.3 53 7-68 12-65 (137)
27 KOG3870 Uncharacterized conser 40.1 12 0.00026 39.4 0.8 19 255-273 349-367 (434)
28 COG3021 Uncharacterized protei 25.0 2.1E+02 0.0046 29.4 6.7 37 342-380 270-307 (309)
29 PRK10947 global DNA-binding tr 23.8 45 0.00097 30.1 1.5 24 316-346 93-119 (135)
30 PF10515 APP_amyloid: beta-amy 20.1 34 0.00073 25.9 -0.1 7 317-323 45-51 (52)
No 1
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=100.00 E-value=1e-101 Score=812.61 Aligned_cols=384 Identities=49% Similarity=0.853 Sum_probs=314.5
Q ss_pred CEEEEeeCCCCCCCCCCCcccccCCCCCCcEEEEeeEEeeecCCCccccccCCchhHHHHHHHHHHhcCCCCcccccccc
Q 041371 1 TFVGTWNVGGKSPHEDLNLRDWLKSTAPADIYVLGFQEIVPLNAGNVLGAEDNGPAAKWLSLIRQALNGNKTDQELSQYY 80 (437)
Q Consensus 1 ifvgTWNV~g~~P~~~~~l~~WL~~~~~~DIyviGfQEiV~Lnagnvl~~ed~~~~~~W~~~i~~~Ln~~~~~~~~~~~~ 80 (437)
||||||||||+.|+.+++|.+||...+||||||||||||||||||||+|++|+.|+++|+.+|+++||+..+....-.++
T Consensus 110 v~v~TWNV~g~~p~~~l~l~~wl~~~~p~DiyviG~QE~v~lna~nv~~~~~~~~~~~W~~~i~~tl~~~~~~~~~~k~~ 189 (621)
T PLN03191 110 VTIGTWNVAGRLPSEDLEIEDWLSTEEPADIYIIGFQEVVPLNAGNVLGAEDSRPIPKWEAIIRRTLNKSNKPESKHKSY 189 (621)
T ss_pred EEEEEeecCCCCCcccCCHHHhccCCCCCCEEEEeeEEeccCcHhhhhccccCCchhhHHHHHHHHHhccCCCCCccccC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999865542111122
Q ss_pred cCCCCCCC-------------c---------------------------------------h---hhhcccCCccccccc
Q 041371 81 NNATSPQT-------------D---------------------------------------Q---DQQASLKPRISFSDL 105 (437)
Q Consensus 81 ~~~~~~~~-------------~---------------------------------------~---~~~~~~~~~~s~~~~ 105 (437)
+++++|.. + + ..++.+..++|.+|
T Consensus 190 S~ppsp~~~~~~~~~e~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~s~~~- 268 (621)
T PLN03191 190 SAPPSPVLRTSIVADELAEEVDSLPLEMMNNEFIDAATGCPSLEPERNKNIGWPEHSLDATPQVVSSNSKLRRVFSSSA- 268 (621)
T ss_pred CCCCCcccCCcchhhhhhhhcccChhhhcccccccccccccccchhhccccCCcccccccCcccccccccceeeecccc-
Confidence 22233211 0 0 00222333333333
Q ss_pred cchhhhccchhhHHhhhhccC-----CC-------CC---------------------CCCCCCC-----------c---
Q 041371 106 LSLEDELGQEDFERLLSLQSS-----SN-------SS---------------------EEDSPSS-----------T--- 138 (437)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~-----~~-------~~---------------------~~~~~~~-----------~--- 138 (437)
.+|-.+.|.++++... +. +. .-++++. .
T Consensus 269 -----r~~~~~~e~p~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (621)
T PLN03191 269 -----RLGFKWPENPSLFSPQRFALNARGLKRSHRSFGNLGLSWNEIKQRSEVPEVPEVIDSLSDVSDRSSEAEDDTFKE 343 (621)
T ss_pred -----ccccCCCCCccccCchhhcccccccchhhhccccccccccchhhcccccccccccccccccccccCCCccccccc
Confidence 2333333333321100 00 00 0001000 0
Q ss_pred --------c--CCCCCCCCCeEEEEeechheeeEeeEEecccccccCcceeeeEeecceeeccCceEEEEEEEEeCeEEE
Q 041371 139 --------C--KSGSPMRRRYCLAASKQMVGIFLCIWVRADLYKHISNLKVSSVGRGIMGYLGNKGSISISMTLHNTTFC 208 (437)
Q Consensus 139 --------~--~~~~~~~~~Y~lv~s~qmvGi~L~Vfvr~~l~~~I~~v~~~~v~tG~~G~~GNKGaV~ir~~i~~ts~~ 208 (437)
. ........+|++|.++||+||+|+||||+++.++|++|++++|+||+||++||||||+|||.+++|+||
T Consensus 344 ~~~~~~~~~~~~~~~~~~~~YvkV~S~qLvGl~L~VFvk~~l~~~Is~V~~s~V~tGl~G~~GNKGAVaIr~~l~~Ts~c 423 (621)
T PLN03191 344 VPSYQLPEDLIKDCRKVKQKYVRIVSKQMVGIYVSVWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSISMSLFQSRLC 423 (621)
T ss_pred CChhhhhhHHHHhhccCCCCEEEEEEEeeeeEEEEEEEehhhhhhcccceeeeEeeccccccccceeEEEEEEEcCcEEE
Confidence 0 012235679999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeccCCCCCCccHhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccceEEEeccccccccCCchhHHHHHHhcCHH
Q 041371 209 FVGTHLASGEKEGDEIRRNSDVAQILKRTRFSHSYIDPAQPLPPETILEHDVIFWLGDLNYRLANGYGDTHEQLKRNDWQ 288 (437)
Q Consensus 209 FVn~HLaAg~~~~~~~rRn~d~~~I~~~~~f~~~~~~~~~~~~~~~i~~~D~vfw~GDLNyRI~~~~~~v~~li~~~~~~ 288 (437)
|||||||||++++++.+||+|+.+|+++++|..... ...+..|.+||+|||||||||||++++++++++|.+++|.
T Consensus 424 FVn~HLAAg~~~~~~~rRN~D~~~I~~~l~F~~~~~----~~~~~~I~dhD~vFWlGDLNYRIdl~~~ev~~lI~~~~~~ 499 (621)
T PLN03191 424 FVCSHLTSGHKDGAEQRRNADVYEIIRRTRFSSVLD----TDQPQTIPSHDQIFWFGDLNYRLNMLDTEVRKLVAQKRWD 499 (621)
T ss_pred EEEeccccccccchHHHHHHHHHHHHhccccCcccc----cCCCccccccceEEEecCccccccCCHHHHHHHHhhccHH
Confidence 999999999988888899999999999999975311 1135678899999999999999999999999999999999
Q ss_pred HHHhhhhhHHHHHcCcccCCccccccccCCCcccccCCCccccccccccCcccCCccccceeeecCCceEEeeecccCcc
Q 041371 289 ALLEKDQLRLEQRAGRVFEGWEEGDIYFPPTYKYITNSDHYVVQTSKSKEKRRTPAWCDRILWKGEGLKQLCYVRGESRF 368 (437)
Q Consensus 289 ~Ll~~DQL~~~~~~g~~f~gf~E~~I~F~PTYKy~~~sd~Y~~~t~~s~~k~R~PSWcDRIL~~~~~~~~l~Y~~~e~~~ 368 (437)
+||++|||++++++|++|.||+||+|+|||||||+.|++.|+....++++|+|+|||||||||++.+++++.|.+.++++
T Consensus 500 ~LL~~DQL~~e~~~g~vF~GF~Eg~I~FpPTYKYd~gSd~Ydg~~~~Ts~KkR~PSWCDRILykg~~i~~l~Y~s~ei~~ 579 (621)
T PLN03191 500 ELINSDQLIKELRSGHVFDGWKEGPIKFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLGKGIKQLCYKRSEIRL 579 (621)
T ss_pred HHHHHhHHHHHHHcCCccCCcccCCccCCCCcccccCCccccccccccccCccccchhheEeecCCCceEeEeccCCccc
Confidence 99999999999999999999999999999999999999999865456789999999999999999999999999999999
Q ss_pred CCCccccceEEEEEeeccCCCCcccc
Q 041371 369 SDHRPVYSFFSVQVNSANKPKPRTIN 394 (437)
Q Consensus 369 SDHrPV~a~F~v~v~~~~~~~~~~i~ 394 (437)
||||||+|.|.|+|+.+++.|.+++.
T Consensus 580 SDHRPV~A~F~v~V~~id~~k~q~~~ 605 (621)
T PLN03191 580 SDHRPVSSMFLVEVEVFDHRKLQRAL 605 (621)
T ss_pred CCchhcceEEEEEEEecCHHHHHhhh
Confidence 99999999999999999999988844
No 2
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.1e-93 Score=761.28 Aligned_cols=304 Identities=42% Similarity=0.759 Sum_probs=284.4
Q ss_pred CEEEEeeCCCCCCCCCCCcccccCCC------CCCcEEEEeeEEeeecCCCccccccCCchhHHHHHHHHHHhcCCCCcc
Q 041371 1 TFVGTWNVGGKSPHEDLNLRDWLKST------APADIYVLGFQEIVPLNAGNVLGAEDNGPAAKWLSLIRQALNGNKTDQ 74 (437)
Q Consensus 1 ifvgTWNV~g~~P~~~~~l~~WL~~~------~~~DIyviGfQEiV~Lnagnvl~~ed~~~~~~W~~~i~~~Ln~~~~~~ 74 (437)
||||||||||+.+....+|.+||.+. .++|||||||||||+||||||+.+ |....+.|+..|+++||+.
T Consensus 539 IfvgTfNvNG~s~~~k~~L~~WLfp~s~~~~~~~aDIyviG~eEvVeLnag~iv~A-s~tk~~~Wee~i~~~Ln~~---- 613 (1080)
T KOG0566|consen 539 IFVGTFNVNGRSAAFKDDLSDWLFPISRGKEFSPADIYVIGFEEVVELNAGNIVSA-STTKRRFWEEKILKTLNRY---- 613 (1080)
T ss_pred EEEEeeeccCccccchhhHHhhccccccCCcCCcCcEEEEeehhhhhcCccceecc-ChHHHHHHHHHHHHHhcCC----
Confidence 79999999997776556799999763 379999999999999999999986 5567788999999999741
Q ss_pred cccccccCCCCCCCchhhhcccCCccccccccchhhhccchhhHHhhhhccCCCCCCCCCCCCccCCCCCCCCCeEEEEe
Q 041371 75 ELSQYYNNATSPQTDQDQQASLKPRISFSDLLSLEDELGQEDFERLLSLQSSSNSSEEDSPSSTCKSGSPMRRRYCLAAS 154 (437)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~lv~s 154 (437)
..+|+++++
T Consensus 614 -----------------------------------------------------------------------~~kYvlL~s 622 (1080)
T KOG0566|consen 614 -----------------------------------------------------------------------KNKYVLLRS 622 (1080)
T ss_pred -----------------------------------------------------------------------CCceEEEeh
Confidence 357999999
Q ss_pred echheeeEeeEEecccccccCcceeeeEeecceeeccCceEEEEEEEEeCeEEEEEeeccCCCCCCccHhHHHHHHHHHH
Q 041371 155 KQMVGIFLCIWVRADLYKHISNLKVSSVGRGIMGYLGNKGSISISMTLHNTTFCFVGTHLASGEKEGDEIRRNSDVAQIL 234 (437)
Q Consensus 155 ~qmvGi~L~Vfvr~~l~~~I~~v~~~~v~tG~~G~~GNKGaV~ir~~i~~ts~~FVn~HLaAg~~~~~~~rRn~d~~~I~ 234 (437)
.||+|++|++|+|.++.++|++|..++++||++|+.||||||+|||.+++|+|||||+|||||+.+ .+.||.||.+|.
T Consensus 623 ~QlvGv~L~iF~r~~~~p~Ik~V~~~tkKTGfGG~tgNKGAVAIrf~~~~TsfCFv~SHlAAG~sn--v~ERn~DY~tI~ 700 (1080)
T KOG0566|consen 623 EQLVGVCLLLFIRPDHAPYIKDVAGDTKKTGFGGATGNKGAVAIRFVYHATSFCFVCSHLAAGQSN--VEERNEDYKTIA 700 (1080)
T ss_pred hhhheeeEEEEEcccccchhhhcccceeecccccccCCCceEEEEEEeccccEEEEecccccccch--HhhhhhhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999975 667999999999
Q ss_pred HhcCCCCCCCCCCCCCCCCcccccceEEEeccccccccCCchhHHHHHHhcCHHHHHhhhhhHHHHHcCcccCCcccccc
Q 041371 235 KRTRFSHSYIDPAQPLPPETILEHDVIFWLGDLNYRLANGYGDTHEQLKRNDWQALLEKDQLRLEQRAGRVFEGWEEGDI 314 (437)
Q Consensus 235 ~~~~f~~~~~~~~~~~~~~~i~~~D~vfw~GDLNyRI~~~~~~v~~li~~~~~~~Ll~~DQL~~~~~~g~~f~gf~E~~I 314 (437)
++++|+.+ ..|.+||+|||||||||||++++++|+++|++++|+.|+++|||+++|.+|.+|.||.|++|
T Consensus 701 r~l~Fp~G----------r~I~~HD~ifW~GDFNYRI~l~nEEVr~~v~~~d~~kL~e~DQL~~q~~~G~vF~gF~E~~l 770 (1080)
T KOG0566|consen 701 RKLRFPRG----------RMIFSHDYIFWLGDFNYRIDLSNEEVRRLVRNQDLDKLLEYDQLTQQMNAGQVFPGFHEGQL 770 (1080)
T ss_pred HhccccCC----------ccccCCceEEEecccceeecCCHHHHHHHHHhccHHHHhhHHHHHHHHhcCccccccccccc
Confidence 99999976 47899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccccCCCccccccccccCcccCCccccceeeecCCceEEeeecccCccCCCccccceEEEEEeeccCCCCcccc
Q 041371 315 YFPPTYKYITNSDHYVVQTSKSKEKRRTPAWCDRILWKGEGLKQLCYVRGESRFSDHRPVYSFFSVQVNSANKPKPRTIN 394 (437)
Q Consensus 315 ~F~PTYKy~~~sd~Y~~~t~~s~~k~R~PSWcDRIL~~~~~~~~l~Y~~~e~~~SDHrPV~a~F~v~v~~~~~~~~~~i~ 394 (437)
+|+||||||.|||+|| +|+|+|+|||||||||+++.+++++|.+.|+++||||||+|+|+++|..++.+++.+|+
T Consensus 771 tF~PTYKyD~gTd~YD-----TSeK~R~PAWTDRIL~r~e~~~~l~Y~~~el~~SDHRPV~A~~~a~i~~Vd~~kk~~l~ 845 (1080)
T KOG0566|consen 771 TFPPTYKYDPGTDDYD-----TSEKCRTPAWTDRILWRGEKLELLSYKRAELKTSDHRPVYAIFRAEIFEVDEQKKLRLF 845 (1080)
T ss_pred ccCCcccccCCCCccc-----cchhccCccchhhheeccccccccccccccccccCCCceEEEEEEEEEEEcHHHHHHHH
Confidence 9999999999999995 78999999999999999999999999999999999999999999999999999998766
Q ss_pred CCC
Q 041371 395 PKS 397 (437)
Q Consensus 395 ~~~ 397 (437)
..-
T Consensus 846 eev 848 (1080)
T KOG0566|consen 846 EEV 848 (1080)
T ss_pred HHH
Confidence 443
No 3
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=100.00 E-value=1.1e-81 Score=630.97 Aligned_cols=294 Identities=39% Similarity=0.777 Sum_probs=261.2
Q ss_pred CEEEEeeCCCCCCCCCCCcccccCC------CCCCcEEEEeeEEeeecCCCccccccCCchhHHHHHHHHHHhcCCCCcc
Q 041371 1 TFVGTWNVGGKSPHEDLNLRDWLKS------TAPADIYVLGFQEIVPLNAGNVLGAEDNGPAAKWLSLIRQALNGNKTDQ 74 (437)
Q Consensus 1 ifvgTWNV~g~~P~~~~~l~~WL~~------~~~~DIyviGfQEiV~Lnagnvl~~ed~~~~~~W~~~i~~~Ln~~~~~~ 74 (437)
|||+||||||+.++...+|.+||.. ..+||||||||||||++++++++. .++.....|.++|..+|+.
T Consensus 5 v~v~TwNv~~~~~~p~~~l~~~l~~~~~~~~~~~pDI~viglQEi~~~~~~~~~~-~~~~~~~~W~~~i~~~l~~----- 78 (310)
T smart00128 5 VLVGTWNVGGLKADPKVDVTSWLFQKIDVKQSEKPDIYVIGLQEVVDLENGVLLE-TIAGKERLWSKLIESSLNG----- 78 (310)
T ss_pred EEEEEEECCCccCCChhhHHHhhccccccccCCCCCEEEEEeeeecccchhhhhh-ccchhHHHHHHHHHHhcCC-----
Confidence 6999999999862223468999975 257999999999999999999875 3556788899998877631
Q ss_pred cccccccCCCCCCCchhhhcccCCccccccccchhhhccchhhHHhhhhccCCCCCCCCCCCCccCCCCCCCCCeEEEEe
Q 041371 75 ELSQYYNNATSPQTDQDQQASLKPRISFSDLLSLEDELGQEDFERLLSLQSSSNSSEEDSPSSTCKSGSPMRRRYCLAAS 154 (437)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~lv~s 154 (437)
..+|.++++
T Consensus 79 -----------------------------------------------------------------------~~~Y~~v~~ 87 (310)
T smart00128 79 -----------------------------------------------------------------------DGQYNVLAK 87 (310)
T ss_pred -----------------------------------------------------------------------CCceEEEee
Confidence 247999999
Q ss_pred echheeeEeeEEecccccccCcceeeeEeecceeeccCceEEEEEEEEeCeEEEEEeeccCCCCCCccHhHHHHHHHHHH
Q 041371 155 KQMVGIFLCIWVRADLYKHISNLKVSSVGRGIMGYLGNKGSISISMTLHNTTFCFVGTHLASGEKEGDEIRRNSDVAQIL 234 (437)
Q Consensus 155 ~qmvGi~L~Vfvr~~l~~~I~~v~~~~v~tG~~G~~GNKGaV~ir~~i~~ts~~FVn~HLaAg~~~~~~~rRn~d~~~I~ 234 (437)
.+|+||+|+||+|.++.++|++++++++++|++|.+||||||+++|.+.+++||||||||+||+++ ..+||+||.+|+
T Consensus 88 ~~l~gi~l~vf~~~~~~~~i~~v~~~~v~~G~~~~~~nKG~v~i~~~~~~~~~~fv~~HL~a~~~~--~~~R~~~~~~I~ 165 (310)
T smart00128 88 VRLVGILVLVFVKANHLVYIKDVETFTVKTGMGGLWGNKGAVAVRFKLSDTSFCFVNSHLAAGASN--VEQRNQDYKTIL 165 (310)
T ss_pred eeecceEEEEEEehhhcCccceeEeeeeeccccceeecCceEEEEEEEcCcEEEEEeeccccccch--hhhhHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999864 678999999999
Q ss_pred HhcCCCCCCCCCCCCCCCCcccccceEEEeccccccccCCc-hhHHHHHHhcCHHHHHhhhhhHHHHHcCcccCCccccc
Q 041371 235 KRTRFSHSYIDPAQPLPPETILEHDVIFWLGDLNYRLANGY-GDTHEQLKRNDWQALLEKDQLRLEQRAGRVFEGWEEGD 313 (437)
Q Consensus 235 ~~~~f~~~~~~~~~~~~~~~i~~~D~vfw~GDLNyRI~~~~-~~v~~li~~~~~~~Ll~~DQL~~~~~~g~~f~gf~E~~ 313 (437)
++++|+... ...+.+||++||||||||||++.. +++.++|++++|..|+++|||+.+++++.+|.||.|++
T Consensus 166 ~~~~f~~~~--------~~~~~~~d~~f~~GDlNyRi~~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~~~~f~~f~E~~ 237 (310)
T smart00128 166 RALSFPERA--------ELSQFDHDVVFWFGDLNFRLDSPSYEEVRRKISKKEFDDLLEKDQLNRQKEAGKVFKGFQEGP 237 (310)
T ss_pred HhcCCCCCc--------cccccccceEEEecCcceeecCCCHHHHHHHHhhCcHHHHhhhhhHHHHhhcccccCcCccCC
Confidence 999987531 123678999999999999999987 89999999999999999999999999999999999999
Q ss_pred cccCCCcccc-cCCCccccccccccCcccCCccccceeeec--CCceEEe-eec-ccCccCCCccccceEEEEEeecc
Q 041371 314 IYFPPTYKYI-TNSDHYVVQTSKSKEKRRTPAWCDRILWKG--EGLKQLC-YVR-GESRFSDHRPVYSFFSVQVNSAN 386 (437)
Q Consensus 314 I~F~PTYKy~-~~sd~Y~~~t~~s~~k~R~PSWcDRIL~~~--~~~~~l~-Y~~-~e~~~SDHrPV~a~F~v~v~~~~ 386 (437)
|+|||||||+ .|++.|+ +++|+|+|||||||||+. ..+.++. |.+ .++.+||||||+|.|.|.++.++
T Consensus 238 I~F~PTYK~~~~~t~~Yd-----~~~k~R~PsWcDRIL~~~~~~~~~~~~~Y~s~~~~~~SDHkPV~~~f~v~~~~~~ 310 (310)
T smart00128 238 ITFPPTYKYDSVGTETYD-----TSEKKRVPAWCDRILYRSNGPNLIQLSEYHSGMELTTSDHKPVFATFRLKVTAVD 310 (310)
T ss_pred cCCCCCeeecCCCCcccc-----CcccccCcchhheehhhccCCCceecccccCCCccCCcCcccccEEEEEEEEecC
Confidence 9999999999 9999995 567999999999999995 3456665 865 57999999999999999998764
No 4
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=3.1e-69 Score=545.80 Aligned_cols=306 Identities=37% Similarity=0.616 Sum_probs=277.7
Q ss_pred CEEEEeeCCCCCCCCCCCcccccCC----CCCCcEEEEeeEEeeecCCCccccccCCchhHHHHHHHHHHhcCCCCcccc
Q 041371 1 TFVGTWNVGGKSPHEDLNLRDWLKS----TAPADIYVLGFQEIVPLNAGNVLGAEDNGPAAKWLSLIRQALNGNKTDQEL 76 (437)
Q Consensus 1 ifvgTWNV~g~~P~~~~~l~~WL~~----~~~~DIyviGfQEiV~Lnagnvl~~ed~~~~~~W~~~i~~~Ln~~~~~~~~ 76 (437)
+|++|+|.+|+.|. .++..||.+ ...+|+||+||||+|+|++|.++++.-......|++.+...||+ .
T Consensus 32 ~f~~~~n~~~~~~k--~~~k~~lfP~~~~~~~~dlyVvGlQEvv~lt~~sils~~p~~rl~~wes~~~~~Ln~-~----- 103 (460)
T COG5411 32 IFVSTFNPPGKPPK--ASTKRWLFPEIEATELADLYVVGLQEVVELTPGSILSADPYDRLRIWESKVLDCLNG-A----- 103 (460)
T ss_pred eEeccccCCCCCch--hhhhhhcccccccccccceEEeccceeeeccchhhccCCcccccchhHHHHHHHhcc-c-----
Confidence 69999999999883 368999987 24699999999999999999999975455567899999988873 1
Q ss_pred cccccCCCCCCCchhhhcccCCccccccccchhhhccchhhHHhhhhccCCCCCCCCCCCCccCCCCCCCCCeEEEEeec
Q 041371 77 SQYYNNATSPQTDQDQQASLKPRISFSDLLSLEDELGQEDFERLLSLQSSSNSSEEDSPSSTCKSGSPMRRRYCLAASKQ 156 (437)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~lv~s~q 156 (437)
+ ..++|.++.+.|
T Consensus 104 ----------~---------------------------------------------------------~~eky~~l~s~q 116 (460)
T COG5411 104 ----------Q---------------------------------------------------------SDEKYSLLRSPQ 116 (460)
T ss_pred ----------c---------------------------------------------------------cCCceEEecchh
Confidence 0 046899999999
Q ss_pred hheeeEeeEEecccccccCcceeeeEeecceeeccCceEEEEEEEEeCeEEEEEeeccCCCCCCccHhHHHHHHHHHHHh
Q 041371 157 MVGIFLCIWVRADLYKHISNLKVSSVGRGIMGYLGNKGSISISMTLHNTTFCFVGTHLASGEKEGDEIRRNSDVAQILKR 236 (437)
Q Consensus 157 mvGi~L~Vfvr~~l~~~I~~v~~~~v~tG~~G~~GNKGaV~ir~~i~~ts~~FVn~HLaAg~~~~~~~rRn~d~~~I~~~ 236 (437)
|+|+++.||.+.+..+.+.+|..+..+||++|..+|||+|+++|.+..+++|||+|||+||.. +.++|+.||..|.+.
T Consensus 117 ~~~~~~~vf~~~~~~~v~~~V~~~~~KtG~gg~s~nKGav~i~~~~~~t~~cFv~shlaag~~--N~eeR~~Dy~~I~~~ 194 (460)
T COG5411 117 LGGILLRVFSLATNLPVVKPVSGTVKKTGFGGSSSNKGAVAIRFNYERTSFCFVNSHLAAGVN--NIEERIFDYRSIASN 194 (460)
T ss_pred ccCcceEEeeeccccceeccccccccccccceecccccccceeEEeecCCcEEEecchhcccc--cHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999985 467899999999999
Q ss_pred cCCCCCCCCCCCCCCCCcccccceEEEeccccccccCCchhHHHHHHhcC--HHHHHhhhhhHHHHHcCcccCCcccccc
Q 041371 237 TRFSHSYIDPAQPLPPETILEHDVIFWLGDLNYRLANGYGDTHEQLKRND--WQALLEKDQLRLEQRAGRVFEGWEEGDI 314 (437)
Q Consensus 237 ~~f~~~~~~~~~~~~~~~i~~~D~vfw~GDLNyRI~~~~~~v~~li~~~~--~~~Ll~~DQL~~~~~~g~~f~gf~E~~I 314 (437)
++|+++ ..|.+||++||+|||||||++.++++...+...+ +..|+++|||..++..|.+|.+|.|..|
T Consensus 195 i~f~~g----------~~I~~hdti~w~GDlNyRVts~~e~v~~~~~~~~g~~~~l~~~DqL~~e~~~g~~f~~f~E~~i 264 (460)
T COG5411 195 ICFSRG----------LRIYDHDTIFWLGDLNYRVTSTNEEVRPEIASDDGRLDKLFEYDQLLWEMEVGNVFPGFKEPVI 264 (460)
T ss_pred eecCCC----------ceecccceEEEecccCceeecCchhcchhhhCCcchhhhhhhhhhHhhhhcccccccceecccc
Confidence 999865 4688999999999999999999999999998887 7889999999999999999999999999
Q ss_pred ccCCCcccccCCCccccccccccCcccCCccccceeeecCCceEEeeeccc-CccCCCccccceEEEEEeeccCCCCccc
Q 041371 315 YFPPTYKYITNSDHYVVQTSKSKEKRRTPAWCDRILWKGEGLKQLCYVRGE-SRFSDHRPVYSFFSVQVNSANKPKPRTI 393 (437)
Q Consensus 315 ~F~PTYKy~~~sd~Y~~~t~~s~~k~R~PSWcDRIL~~~~~~~~l~Y~~~e-~~~SDHrPV~a~F~v~v~~~~~~~~~~i 393 (437)
+|||||||+.|+++|+ +++|.|+||||||||+++..+...+|.+.. +++||||||+|+|++.+..+|..++..+
T Consensus 265 ~FpPTYKfd~gt~~yd-----tsdk~RiPsWtDRIl~~s~~~~p~sY~sip~l~~SDHrPV~a~~~~~i~~~d~~~k~~~ 339 (460)
T COG5411 265 TFPPTYKFDYGTDEYD-----TSDKGRIPSWTDRILYKSEQLTPHSYSSIPHLMISDHRPVYATFRAKIKVVDPSKKEGL 339 (460)
T ss_pred cCCCceEeecCCcccc-----ccccccCCchhhhhhhhccccccccccccCceeecCCCeEEEEEecceEEeCcchhhhh
Confidence 9999999999999995 568999999999999999999999998866 9999999999999999999998877765
Q ss_pred cCCCC
Q 041371 394 NPKSC 398 (437)
Q Consensus 394 ~~~~~ 398 (437)
....+
T Consensus 340 ~~~l~ 344 (460)
T COG5411 340 IEKLY 344 (460)
T ss_pred hhhhh
Confidence 54444
No 5
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=99.98 E-value=1.4e-32 Score=267.21 Aligned_cols=174 Identities=28% Similarity=0.425 Sum_probs=130.5
Q ss_pred eccCceEEEEEEEEeCeEEEEEeeccCCCCCCc---------cHhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccc
Q 041371 189 YLGNKGSISISMTLHNTTFCFVGTHLASGEKEG---------DEIRRNSDVAQILKRTRFSHSYIDPAQPLPPETILEHD 259 (437)
Q Consensus 189 ~~GNKGaV~ir~~i~~ts~~FVn~HLaAg~~~~---------~~~rRn~d~~~I~~~~~f~~~~~~~~~~~~~~~i~~~D 259 (437)
.++.||.+.+|++|+++.|||||+||.++..+. +...|..++..|+.+.. ..+..++
T Consensus 64 kwSRKGfmrtrw~i~~t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~--------------~~~~~~~ 129 (356)
T PTZ00312 64 GRSRKGFLLLSLRLGTVVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECS--------------AFISPSD 129 (356)
T ss_pred CccccceEEEEEEECCEEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHh--------------hccCCCC
Confidence 378999999999999999999999999998754 23568899999997532 1234679
Q ss_pred eEEEeccccccccCCchhHHHHHH----------h------cCHHHHHhhhhhHHHHHc-------------CcccCCcc
Q 041371 260 VIFWLGDLNYRLANGYGDTHEQLK----------R------NDWQALLEKDQLRLEQRA-------------GRVFEGWE 310 (437)
Q Consensus 260 ~vfw~GDLNyRI~~~~~~v~~li~----------~------~~~~~Ll~~DQL~~~~~~-------------g~~f~gf~ 310 (437)
++|||||||||++... ..+.++ . ..|.+|++.|||..|++. .+.|.++.
T Consensus 130 ~lF~fGDfNyRld~~~--~~e~L~ek~Ql~ve~~~g~~~~P~hf~~Lf~~dQl~rE~~~fd~e~q~l~~~va~~s~~eLa 207 (356)
T PTZ00312 130 PLFIFGDFNVRLDGHN--LLEWLKEKMQIDVKIEVKRVRAPDRFWELFTNPQTQGEIRRFDLELQRLMDVVAQQSGVELA 207 (356)
T ss_pred cEEEeccceeeecccc--HHHHhcccccccccccccccCChHHHHHHhcChhhhHHHhhhhhhhhhhhhhhhhhcccchh
Confidence 9999999999999742 222222 1 248999999999999884 56777999
Q ss_pred ccccccCCCcccccC----------------CCccccc--------------------cc-----------------ccc
Q 041371 311 EGDIYFPPTYKYITN----------------SDHYVVQ--------------------TS-----------------KSK 337 (437)
Q Consensus 311 E~~I~F~PTYKy~~~----------------sd~Y~~~--------------------t~-----------------~s~ 337 (437)
|+||.||||||-... ...|.++ |. ..+
T Consensus 208 E~pI~FpPTYkrva~r~~~~~~~~~a~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~g~~d~i~~~~~l~~~ta~P~r~~ 287 (356)
T PTZ00312 208 EFAIRFPPTYPRVAERTNTGAQIESAGANVAASVYGVKDVAAKLDNQQRKKAAKDLKGTADAILASVVLTRVTAIPHRNY 287 (356)
T ss_pred cccccCCCcchhhhhhcCCcchhhhcccccccchhcccccccccccccccchhhhccCccceeeeeeeeecccccCCcch
Confidence 999999999993311 1111100 00 125
Q ss_pred CcccCCccccceeeecCCc----------------------------eEEeeecccCccCCCccccceE
Q 041371 338 EKRRTPAWCDRILWKGEGL----------------------------KQLCYVRGESRFSDHRPVYSFF 378 (437)
Q Consensus 338 ~k~R~PSWcDRIL~~~~~~----------------------------~~l~Y~~~e~~~SDHrPV~a~F 378 (437)
.+.|+|||||||||...++ ....|.+.++..+||.||+..|
T Consensus 288 ~~~r~pawcdrvl~~~~~~~~~~~~r~~~a~~~~~aa~~~~~~~~~~~~~~Y~s~~L~htDH~~V~~lF 356 (356)
T PTZ00312 288 CRDRLPAWCDRVLWNPAGLELMTGDRSRSASPQSAAASKGDQASGQSCRYAYRSIDLIHTDHDGVFLLF 356 (356)
T ss_pred hcccchhhhheeeechhhhhhhcCccccCCCcchhhhccCCcccchhhhheeeeeeeeeccCccceecC
Confidence 6899999999999974321 1245778899999999999876
No 6
>KOG0565 consensus Inositol polyphosphate 5-phosphatase and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1e-27 Score=215.31 Aligned_cols=142 Identities=45% Similarity=0.716 Sum_probs=125.0
Q ss_pred CeEEEEeechheeeEeeEEecccccccCcceeeeEeecceeeccCceEEEEEEEEeCeEEEEEeeccCCCCCCccHhHHH
Q 041371 148 RYCLAASKQMVGIFLCIWVRADLYKHISNLKVSSVGRGIMGYLGNKGSISISMTLHNTTFCFVGTHLASGEKEGDEIRRN 227 (437)
Q Consensus 148 ~Y~lv~s~qmvGi~L~Vfvr~~l~~~I~~v~~~~v~tG~~G~~GNKGaV~ir~~i~~ts~~FVn~HLaAg~~~~~~~rRn 227 (437)
.|..+.+.+|+|+.+.+|++.++..++.+++++++++|++|++||||+|++++.++++++|||+|||+||.++.+ ++||
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~g~~~~~~nkg~v~is~~~~~~~~~~v~~hl~~~~~~~~-~~r~ 80 (145)
T KOG0565|consen 2 LYVVVASGRLVGIDLSVLLRRDLLDHSFNVRVSEVGTGIMGYLGNKGGVAISFVLSQTSFCFVISHLTSGVHKVY-ERRN 80 (145)
T ss_pred cEEEEeeeEEEEEEEEEEehhhhhhhhcccEEEEecceEEEEeCCCCeEEEEEEEcCceEEEEEecccccchhhH-HHhh
Confidence 599999999999999999999999999999999999999999999999999999999999999999999987643 3499
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCCCCCcccc-cceEEEeccccccccCC-chhHHHHHHhcCHHHHHhhh
Q 041371 228 SDVAQILKRTRFSHSYIDPAQPLPPETILE-HDVIFWLGDLNYRLANG-YGDTHEQLKRNDWQALLEKD 294 (437)
Q Consensus 228 ~d~~~I~~~~~f~~~~~~~~~~~~~~~i~~-~D~vfw~GDLNyRI~~~-~~~v~~li~~~~~~~Ll~~D 294 (437)
+|+.+|++++.|..... ...+..+.. ||.|||+||||||+..+ +.++..++..+.+..|+++|
T Consensus 81 ~d~~~i~~~~~~~~~~~----~~~~~~~~~~~D~v~w~GDlN~Rl~~~~~~~~~~~~~~~~~~~l~~~d 145 (145)
T KOG0565|consen 81 EDYQEILNGLRFPSVSP----ASEPVISDGEHDTVIWLGDLNYRLSGPSYLEVRTLISVKSRDGLLEKD 145 (145)
T ss_pred ccHHHHHhhccccccCc----ccccccccccccEEEEecceeeeecCcccccchhhhhhcchhhhhccC
Confidence 99999999999986421 112223333 89999999999999998 77888889899998888776
No 7
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=99.78 E-value=1.1e-19 Score=177.56 Aligned_cols=172 Identities=27% Similarity=0.450 Sum_probs=111.3
Q ss_pred ccCceEEEEEEEEeCeEEEEEeeccCCCCCCc---------cHhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccce
Q 041371 190 LGNKGSISISMTLHNTTFCFVGTHLASGEKEG---------DEIRRNSDVAQILKRTRFSHSYIDPAQPLPPETILEHDV 260 (437)
Q Consensus 190 ~GNKGaV~ir~~i~~ts~~FVn~HLaAg~~~~---------~~~rRn~d~~~I~~~~~f~~~~~~~~~~~~~~~i~~~D~ 260 (437)
++.||-.-.|++|++..|.|||.||-...++. ....|.+.+.-+|+++.= .-+..|.
T Consensus 154 ~~rkg~~~~r~~I~~k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~~--------------~~~~~~~ 219 (391)
T KOG1976|consen 154 NQRKGFLLARFRIHGKEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELDE--------------EGLRNDA 219 (391)
T ss_pred hhhccccceeEEEcCceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHHh--------------hccCceE
Confidence 57899999999999999999999997665321 123577777777776521 1124579
Q ss_pred EEEeccccccccCCc-----------hhH--------HHHH---------------HhcCHHHHHhhhhhHH-----HH-
Q 041371 261 IFWLGDLNYRLANGY-----------GDT--------HEQL---------------KRNDWQALLEKDQLRL-----EQ- 300 (437)
Q Consensus 261 vfw~GDLNyRI~~~~-----------~~v--------~~li---------------~~~~~~~Ll~~DQL~~-----~~- 300 (437)
+|.|||||||++... ..+ .++| +++.|+ -+.+|-+.. -+
T Consensus 220 ~fVfGdfNfrLds~s~ln~l~a~q~~qtv~~~d~~~vv~~ifr~esd~drkv~l~vEkk~FD-yfnh~~f~d~~r~~~~~ 298 (391)
T KOG1976|consen 220 IFVFGDFNFRLDSTSLLNYLAATQLVQTVAKKDEDGVVESIFRVESDGDRKVTLTVEKKRFD-YFNHDWFFDLGRGMVKR 298 (391)
T ss_pred EEEecccccccchHHHHHHHhcCCccchhhhcccCcceeeEEeecccCCceeEEEeehhhcc-hhhhHHHHHcCchhhhh
Confidence 999999999999631 011 1111 111111 111122110 00
Q ss_pred --HcCcccCC-ccccccccCCCcccccCCCccccccccccCcccCCccccceeeecCC----------ceEEeeec--cc
Q 041371 301 --RAGRVFEG-WEEGDIYFPPTYKYITNSDHYVVQTSKSKEKRRTPAWCDRILWKGEG----------LKQLCYVR--GE 365 (437)
Q Consensus 301 --~~g~~f~g-f~E~~I~F~PTYKy~~~sd~Y~~~t~~s~~k~R~PSWcDRIL~~~~~----------~~~l~Y~~--~e 365 (437)
+.-..|+. ..|..|.|||||.|..+..+= ...++.|+||||||||+.... .+.+.|.. .|
T Consensus 299 ~dkEl~nf~~kl~E~~i~FpPsypysed~~~~-----E~~m~TrcPAWcDRILmn~~a~eLv~~~e~e~~~~~Y~~vg~e 373 (391)
T KOG1976|consen 299 YDKELANFAFKLKEETIFFPPSYPYSEDDSGK-----EEFMRTRCPAWCDRILMNDRANELVKHDEFEASGLYYGLVGEE 373 (391)
T ss_pred cchHHHHHHHHHhheeecCCCCCCCCcCccch-----HHHHhccChHhhhhhhcCccHHHHhhccccCcccceecccccc
Confidence 01112333 679999999999998765321 234789999999999997531 12355654 36
Q ss_pred CccCCCccccceEEEE
Q 041371 366 SRFSDHRPVYSFFSVQ 381 (437)
Q Consensus 366 ~~~SDHrPV~a~F~v~ 381 (437)
..+.|||||+..|++.
T Consensus 374 ~c~GdHKpVfl~~~i~ 389 (391)
T KOG1976|consen 374 KCVGDHKPVFLHASIC 389 (391)
T ss_pred cccCCCcceEEEEeec
Confidence 7899999999999874
No 8
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=98.89 E-value=2.5e-10 Score=105.53 Aligned_cols=99 Identities=20% Similarity=0.268 Sum_probs=53.8
Q ss_pred heeeEeeEEecccccccCcceeeeEeecce---eeccCceEEEEEEEEeCeEEEEEeeccCCCCCCccHhHHHHHHHHHH
Q 041371 158 VGIFLCIWVRADLYKHISNLKVSSVGRGIM---GYLGNKGSISISMTLHNTTFCFVGTHLASGEKEGDEIRRNSDVAQIL 234 (437)
Q Consensus 158 vGi~L~Vfvr~~l~~~I~~v~~~~v~tG~~---G~~GNKGaV~ir~~i~~ts~~FVn~HLaAg~~~~~~~rRn~d~~~I~ 234 (437)
.+..+.++.|.++...+........+.+.. ....+++.+.+++. +..|+++++|+.+... .|..+..+++
T Consensus 72 ~~~g~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~~~H~~~~~~-----~~~~~~~~~~ 144 (249)
T PF03372_consen 72 GGYGVAILSRSPIFSSVSYVFSLFSKPGIRIFRRSSKSKGIVPVSIN--GKPITVVNVHLPSSND-----ERQEQWRELL 144 (249)
T ss_dssp SSEEEEEEESSCCCEEEEEEEEEESSSTTCEEEEEEEEEEEEEEEEE--TEEEEEEEEETTSHHH-----HHHHHHHHHH
T ss_pred cCceEEEEEcccccccccccccccccccccccccccccccccccccc--ceEEEeeeccccccch-----hhhhhhhhhh
Confidence 566677888887554443333333233322 23456666666666 9999999999998532 2222222333
Q ss_pred HhcCCCCCCCCCCCCCCCCcccccceEEEeccccccccCCc
Q 041371 235 KRTRFSHSYIDPAQPLPPETILEHDVIFWLGDLNYRLANGY 275 (437)
Q Consensus 235 ~~~~f~~~~~~~~~~~~~~~i~~~D~vfw~GDLNyRI~~~~ 275 (437)
..+.-... . .....+|++||||.+.+...
T Consensus 145 ~~~~~~~~------~------~~~~~~iv~GDfN~~~~~~~ 173 (249)
T PF03372_consen 145 ARIQKIYA------D------NPNEPVIVMGDFNSRPDSRD 173 (249)
T ss_dssp HHHHHHHH------T------SSCCEEEEEEE-SS-BSSGG
T ss_pred hhhhhccc------c------cccceEEEEeecccCCccch
Confidence 32210000 0 00116999999999998643
No 9
>PRK05421 hypothetical protein; Provisional
Probab=98.76 E-value=1.7e-07 Score=92.23 Aligned_cols=59 Identities=15% Similarity=0.133 Sum_probs=42.2
Q ss_pred CceEEEEEEEE-eCeEEEEEeeccCCCCCCccHhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccceEEEeccccc
Q 041371 192 NKGSISISMTL-HNTTFCFVGTHLASGEKEGDEIRRNSDVAQILKRTRFSHSYIDPAQPLPPETILEHDVIFWLGDLNY 269 (437)
Q Consensus 192 NKGaV~ir~~i-~~ts~~FVn~HLaAg~~~~~~~rRn~d~~~I~~~~~f~~~~~~~~~~~~~~~i~~~D~vfw~GDLNy 269 (437)
-||++.+.+.+ .+..+.++|+||.+.... ...|..++..|.+.+. . ....+|++||||=
T Consensus 134 ~r~~l~a~~~~~~g~~l~v~ntHl~~~~~~--~~~r~~q~~~l~~~~~---~--------------~~~p~Il~GDFN~ 193 (263)
T PRK05421 134 PKSALITEYPLPNGRTLLVVNIHAINFSLG--VDVYSKQLEPIGDQIA---H--------------HSGPVILAGDFNT 193 (263)
T ss_pred cceeEEEEEEeCCCCEEEEEEECccccCcC--hHHHHHHHHHHHHHHH---h--------------CCCCEEEEccccc
Confidence 37899999988 566799999999875322 3457778877776431 0 0146899999993
No 10
>PRK11756 exonuclease III; Provisional
Probab=98.48 E-value=1.1e-06 Score=86.12 Aligned_cols=65 Identities=11% Similarity=0.181 Sum_probs=37.9
Q ss_pred CceEEEEEEEEeCeEEEEEeeccCCCCCCc---cHhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccceEEEecccc
Q 041371 192 NKGSISISMTLHNTTFCFVGTHLASGEKEG---DEIRRNSDVAQILKRTRFSHSYIDPAQPLPPETILEHDVIFWLGDLN 268 (437)
Q Consensus 192 NKGaV~ir~~i~~ts~~FVn~HLaAg~~~~---~~~rRn~d~~~I~~~~~f~~~~~~~~~~~~~~~i~~~D~vfw~GDLN 268 (437)
..+.+.+.+...+..|.|+|+|++.+.... ....|...+..+...+.- .......+|++||||
T Consensus 88 ~~r~l~~~i~~~~g~~~v~n~y~P~~~~~~~~~~~~~r~~~~~~l~~~l~~--------------~~~~~~pvIl~GDfN 153 (268)
T PRK11756 88 QRRIIMATIPTPNGNLTVINGYFPQGESRDHPTKFPAKRQFYQDLQNYLET--------------ELSPDNPLLIMGDMN 153 (268)
T ss_pred cCCEEEEEEEcCCCCEEEEEEEecCCCCCCcchhHHHHHHHHHHHHHHHHH--------------HhccCCCEEEEeecc
Confidence 357788888876666999999998875311 111233333333332210 001224699999999
Q ss_pred cc
Q 041371 269 YR 270 (437)
Q Consensus 269 yR 270 (437)
--
T Consensus 154 ~~ 155 (268)
T PRK11756 154 IS 155 (268)
T ss_pred cC
Confidence 64
No 11
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.39 E-value=4.7e-06 Score=80.11 Aligned_cols=34 Identities=38% Similarity=0.665 Sum_probs=23.3
Q ss_pred EEEEeeCCCCCCCCCCCc-ccccCCCCCCcEEEEeeEEe
Q 041371 2 FVGTWNVGGKSPHEDLNL-RDWLKSTAPADIYVLGFQEI 39 (437)
Q Consensus 2 fvgTWNV~g~~P~~~~~l-~~WL~~~~~~DIyviGfQEi 39 (437)
-|.||||+|-..... .+ .+||... .||| ++|||+
T Consensus 2 ri~t~Nv~g~~~~~~-~~~~~~l~~~-~~DI--v~LQE~ 36 (255)
T TIGR00633 2 KIISWNVNGLRARLH-KLFLDWLKEE-QPDV--LCLQET 36 (255)
T ss_pred EEEEEecccHHHHhh-ccHHHHHHhc-CCCE--EEEEec
Confidence 489999998644322 34 6777764 5687 467996
No 12
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=98.33 E-value=1.4e-05 Score=78.42 Aligned_cols=35 Identities=29% Similarity=0.434 Sum_probs=25.1
Q ss_pred EEEEeeCCCCCCCCCCCcccccCCCCCCcEEEEeeEEe
Q 041371 2 FVGTWNVGGKSPHEDLNLRDWLKSTAPADIYVLGFQEI 39 (437)
Q Consensus 2 fvgTWNV~g~~P~~~~~l~~WL~~~~~~DIyviGfQEi 39 (437)
=|.||||||-.-.....+.+||... .||| |.|||+
T Consensus 2 ki~swNVNgir~~~~~~~~~~l~~~-~~DI--iclQEt 36 (250)
T PRK13911 2 KLISWNVNGLRACMTKGFMDFFNSV-DADV--FCIQES 36 (250)
T ss_pred EEEEEEeCChhHhhhhhHHHHHHhc-CCCE--EEEEee
Confidence 3789999996533323478899864 6786 568997
No 13
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=98.31 E-value=9.2e-06 Score=81.12 Aligned_cols=147 Identities=20% Similarity=0.328 Sum_probs=87.1
Q ss_pred eccCceEEEEEEEEeCeEEEEEeeccCCCCCC----ccHhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccceEEEe
Q 041371 189 YLGNKGSISISMTLHNTTFCFVGTHLASGEKE----GDEIRRNSDVAQILKRTRFSHSYIDPAQPLPPETILEHDVIFWL 264 (437)
Q Consensus 189 ~~GNKGaV~ir~~i~~ts~~FVn~HLaAg~~~----~~~~rRn~d~~~I~~~~~f~~~~~~~~~~~~~~~i~~~D~vfw~ 264 (437)
...+||.+.+++.+.+..+.++|.||.+.... .....|..++.+|.+.+.-. .+-..+.+|++
T Consensus 117 ~~~~kg~l~a~i~~~g~~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~~~-------------~~~~~~pvIl~ 183 (283)
T TIGR03395 117 NLSNKGFAYVKINKNGKKFHVIGTHLQAQDSMCSKLGPASIRANQLNEIQDFIDSK-------------NIPKDETVLIG 183 (283)
T ss_pred cccCCceEEEEEecCCeEEEEEEeCCCCCcccccccccHHHHHHHHHHHHHHHhhc-------------cCCCCceEEEE
Confidence 35789999999999999999999999985321 11456888998887754210 11233569999
Q ss_pred ccccccccCCchhHHHHHHhcCHHHHHhhhhhHHHHHcCcccCCccccccccCCCcccccCCCccccccccccCcccCCc
Q 041371 265 GDLNYRLANGYGDTHEQLKRNDWQALLEKDQLRLEQRAGRVFEGWEEGDIYFPPTYKYITNSDHYVVQTSKSKEKRRTPA 344 (437)
Q Consensus 265 GDLNyRI~~~~~~v~~li~~~~~~~Ll~~DQL~~~~~~g~~f~gf~E~~I~F~PTYKy~~~sd~Y~~~t~~s~~k~R~PS 344 (437)
||||-.=+. .+ |..|+ .+|. ... .+|. .|.|-||...+.|... .. .+-.|.
T Consensus 184 GDfN~~~~s--~~---------~~~ml--~~l~----~~~--p~~~------g~~~T~d~~~N~~a~~---~~-~~~~~~ 234 (283)
T TIGR03395 184 GDLNVNKGS--NE---------YHDMF--KTLN----VSE--PRYV------GVPATWDATTNSIAKY---YY-PKEEPE 234 (283)
T ss_pred eeCCCCCCC--HH---------HHHHH--HHhc----ccC--CCcC------CCCCCcCCCcCchhhh---hc-CCCCcc
Confidence 999976432 11 22221 1111 110 1121 2455567766666421 11 123477
Q ss_pred cccceeeecCCce-----EEee---------ec-ccCccCCCccccce
Q 041371 345 WCDRILWKGEGLK-----QLCY---------VR-GESRFSDHRPVYSF 377 (437)
Q Consensus 345 WcDRIL~~~~~~~-----~l~Y---------~~-~e~~~SDHrPV~a~ 377 (437)
+-||||+++...+ .+.+ .. ....+|||-||++.
T Consensus 235 ~lDyvl~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~sdh~~v~~~ 282 (283)
T TIGR03395 235 YLDYIFVSKSHAQPPVWQNKVLDPKSVTSWFKKYTYDDFSDHYPVYGF 282 (283)
T ss_pred eEEEEEEECCCCCCccccceEEeccccccccccccccccccccceeee
Confidence 9999999865321 1111 11 23468999999874
No 14
>PTZ00297 pantothenate kinase; Provisional
Probab=97.84 E-value=0.00054 Score=81.85 Aligned_cols=69 Identities=10% Similarity=0.148 Sum_probs=40.9
Q ss_pred cCceEEEEEEEEe----C-eEEEEEeeccCCCCCCccHhHHHHHHHHHHHh-c-CCCCCCCCCCCCCCCCcccccceEEE
Q 041371 191 GNKGSISISMTLH----N-TTFCFVGTHLASGEKEGDEIRRNSDVAQILKR-T-RFSHSYIDPAQPLPPETILEHDVIFW 263 (437)
Q Consensus 191 GNKGaV~ir~~i~----~-ts~~FVn~HLaAg~~~~~~~rRn~d~~~I~~~-~-~f~~~~~~~~~~~~~~~i~~~D~vfw 263 (437)
.+||.+-+.+.+. + ..+.|+|.||.+........+|...+.+++.. + .|... ..+.....+|+
T Consensus 131 ~~RG~L~a~I~vp~~~g~~~~v~v~~tHL~~~~~~~~R~~Q~~ql~~~i~~~i~~~~~~----------~~~~~~~PvIL 200 (1452)
T PTZ00297 131 VRRGCLFAEVEVPLAEGGSQRIVFFNVHLRQEDSLPSTSSQVQETRRFVESVIANVYEQ----------NNDGAEIPFVI 200 (1452)
T ss_pred cccceEEEEEEccccCCCCceEEEEEeCCCCCCCcchHHHHHHHHHHHHHHhhhhhccc----------ccCCCCCCEEE
Confidence 5899999998884 2 57999999999875421122233334444332 1 01000 11123357999
Q ss_pred eccccc
Q 041371 264 LGDLNY 269 (437)
Q Consensus 264 ~GDLNy 269 (437)
.||||=
T Consensus 201 aGDFN~ 206 (1452)
T PTZ00297 201 AGDFNI 206 (1452)
T ss_pred EeeCCC
Confidence 999993
No 15
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=97.82 E-value=0.00029 Score=68.37 Aligned_cols=34 Identities=29% Similarity=0.498 Sum_probs=23.8
Q ss_pred EEEEeeCCCCCCCCCCCcccccCCCCCCcEEEEeeEEe
Q 041371 2 FVGTWNVGGKSPHEDLNLRDWLKSTAPADIYVLGFQEI 39 (437)
Q Consensus 2 fvgTWNV~g~~P~~~~~l~~WL~~~~~~DIyviGfQEi 39 (437)
=|.||||+|-.... ..+..||... .|||++ |||.
T Consensus 2 ri~t~Ni~g~~~~~-~~~~~~l~~~-~~DIi~--LQE~ 35 (254)
T TIGR00195 2 KIISWNVNGLRARL-HKGLAWLKEN-QPDVLC--LQET 35 (254)
T ss_pred EEEEEEcCcHHHhH-HHHHHHHHhc-CCCEEE--EEec
Confidence 47899999954322 2367788765 578866 8995
No 16
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=97.41 E-value=0.00093 Score=65.97 Aligned_cols=62 Identities=19% Similarity=0.359 Sum_probs=42.7
Q ss_pred EEEEEeCeEEEEEeeccCCCCCCccHhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccceEEEeccccccccC
Q 041371 198 ISMTLHNTTFCFVGTHLASGEKEGDEIRRNSDVAQILKRTRFSHSYIDPAQPLPPETILEHDVIFWLGDLNYRLAN 273 (437)
Q Consensus 198 ir~~i~~ts~~FVn~HLaAg~~~~~~~rRn~d~~~I~~~~~f~~~~~~~~~~~~~~~i~~~D~vfw~GDLNyRI~~ 273 (437)
+-..+.+..+||.++||.+-... ..+|.+++...+++++=.- .++..-.||+-||+|.|=..
T Consensus 197 ~Ev~v~G~Kl~l~tsHLEStr~h--~P~r~~qF~~~~~k~~EaI------------e~lPnA~ViFGGD~NlrD~e 258 (349)
T KOG2756|consen 197 VEVNVSGNKLCLMTSHLESTRGH--APERMNQFKMVLKKMQEAI------------ESLPNATVIFGGDTNLRDRE 258 (349)
T ss_pred EEEeecCceEEEEeccccCCCCC--ChHHHHHHHHHHHHHHHHH------------HhCCCceEEEcCcccchhhh
Confidence 44556677799999999997642 4578888887777653100 11123468999999998654
No 17
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=97.30 E-value=0.005 Score=61.56 Aligned_cols=57 Identities=14% Similarity=0.259 Sum_probs=33.9
Q ss_pred EEEEEEEEeCe---EEEEEeeccCCCCCCccHhHHHHHHHH-HHHhcCCCCCCCCCCCCCCCCcccccceEEEecccccc
Q 041371 195 SISISMTLHNT---TFCFVGTHLASGEKEGDEIRRNSDVAQ-ILKRTRFSHSYIDPAQPLPPETILEHDVIFWLGDLNYR 270 (437)
Q Consensus 195 aV~ir~~i~~t---s~~FVn~HLaAg~~~~~~~rRn~d~~~-I~~~~~f~~~~~~~~~~~~~~~i~~~D~vfw~GDLNyR 270 (437)
...++|+...+ .|.+|++|+.+.. ..++.+.+.+ ++.... .. ..+-||++||||=-
T Consensus 129 P~~~~F~~~~~~~~~F~li~~H~~p~~----~~~e~~aL~~v~~~~~~---------------~~-~~~~villGDFNa~ 188 (276)
T smart00476 129 PFVVKFSSPSTAVKEFVIVPLHTTPEA----AVAEIDALYDVYLDVRQ---------------KW-GTEDVIFMGDFNAG 188 (276)
T ss_pred ceEEEEEeCCCCCccEEEEEecCChHH----HHHHHHHHHHHHHHHHH---------------hh-ccCCEEEEccCCCC
Confidence 45567776664 7999999998853 2234433222 222210 00 12568999999974
Q ss_pred c
Q 041371 271 L 271 (437)
Q Consensus 271 I 271 (437)
.
T Consensus 189 ~ 189 (276)
T smart00476 189 C 189 (276)
T ss_pred C
Confidence 4
No 18
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=97.26 E-value=0.0019 Score=63.80 Aligned_cols=61 Identities=25% Similarity=0.410 Sum_probs=44.8
Q ss_pred CceEEEEEEEEe-CeEEEEEeeccCCCCCCccHhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccceEEEecccc--
Q 041371 192 NKGSISISMTLH-NTTFCFVGTHLASGEKEGDEIRRNSDVAQILKRTRFSHSYIDPAQPLPPETILEHDVIFWLGDLN-- 268 (437)
Q Consensus 192 NKGaV~ir~~i~-~ts~~FVn~HLaAg~~~~~~~rRn~d~~~I~~~~~f~~~~~~~~~~~~~~~i~~~D~vfw~GDLN-- 268 (437)
-.|++-+.+... +..|-++|.||.=.+ +.|.++...|++.+.++. ...++++||||
T Consensus 118 ~Rgal~a~~~~~~g~~l~V~~~HL~l~~-----~~R~~Q~~~L~~~~~l~~----------------~~p~vl~GDFN~~ 176 (259)
T COG3568 118 PRGALLAEIELPGGKPLRVINAHLGLSE-----ESRLRQAAALLALAGLPA----------------LNPTVLMGDFNNE 176 (259)
T ss_pred CceeEEEEEEcCCCCEEEEEEEeccccH-----HHHHHHHHHHHhhccCcc----------------cCceEEEccCCCC
Confidence 378888888885 669999999999443 458888888887332221 12789999999
Q ss_pred -----ccccC
Q 041371 269 -----YRLAN 273 (437)
Q Consensus 269 -----yRI~~ 273 (437)
||+..
T Consensus 177 p~s~~yr~~~ 186 (259)
T COG3568 177 PGSAEYRLAA 186 (259)
T ss_pred CCCccceecc
Confidence 66654
No 19
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=96.58 E-value=0.092 Score=57.93 Aligned_cols=62 Identities=21% Similarity=0.252 Sum_probs=40.5
Q ss_pred EEEEEeeccCCCCCCccHhHHHHHHHHHHHhcC-CCCCCCCCCCCCCCCcccccceEEEeccccccccCCchhHHHHHHh
Q 041371 206 TFCFVGTHLASGEKEGDEIRRNSDVAQILKRTR-FSHSYIDPAQPLPPETILEHDVIFWLGDLNYRLANGYGDTHEQLKR 284 (437)
Q Consensus 206 s~~FVn~HLaAg~~~~~~~rRn~d~~~I~~~~~-f~~~~~~~~~~~~~~~i~~~D~vfw~GDLNyRI~~~~~~v~~li~~ 284 (437)
.||++|+||-.+....+ -|..+...|++.+. +... ..-.+|++||||- .+...+.++|.+
T Consensus 418 ~l~VaNTHL~~~p~~~d--vRl~Q~~~Ll~~l~~~~~~--------------~~~PvIlcGDFNS---~P~S~vy~lLt~ 478 (606)
T PLN03144 418 LLCVANTHIHANQELKD--VKLWQVHTLLKGLEKIAAS--------------ADIPMLVCGDFNS---VPGSAPHCLLAT 478 (606)
T ss_pred EEEEEEeeeccCCccch--hHHHHHHHHHHHHHHHhhc--------------CCCceEEeccCCC---CCCChhhhhhhc
Confidence 59999999977654333 46666666766542 1100 1125899999995 455668888877
Q ss_pred cC
Q 041371 285 ND 286 (437)
Q Consensus 285 ~~ 286 (437)
|.
T Consensus 479 G~ 480 (606)
T PLN03144 479 GK 480 (606)
T ss_pred CC
Confidence 64
No 20
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=95.85 E-value=0.018 Score=57.11 Aligned_cols=33 Identities=39% Similarity=0.823 Sum_probs=23.6
Q ss_pred EEEeeCCCCCCCCCCCcccccCCCCCCcEEEEeeEEe
Q 041371 3 VGTWNVGGKSPHEDLNLRDWLKSTAPADIYVLGFQEI 39 (437)
Q Consensus 3 vgTWNV~g~~P~~~~~l~~WL~~~~~~DIyviGfQEi 39 (437)
+.||||||-.-.-. .+.+||....| || |++||+
T Consensus 3 I~SwNVNgiRar~~-~~~~~l~~~~p-DV--lclQEt 35 (261)
T COG0708 3 IASWNVNGLRARLK-KLLDWLEEEQP-DV--LCLQET 35 (261)
T ss_pred eEEEehhhHHHHHH-HHHHHHHHhCC-CE--EEEEec
Confidence 68999999543222 27889987645 86 678997
No 21
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=95.48 E-value=0.16 Score=50.69 Aligned_cols=55 Identities=20% Similarity=0.225 Sum_probs=36.0
Q ss_pred cCceEEEEEEEEeCeEEEEEeeccCCCCCCccHhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccceEEEecccc
Q 041371 191 GNKGSISISMTLHNTTFCFVGTHLASGEKEGDEIRRNSDVAQILKRTRFSHSYIDPAQPLPPETILEHDVIFWLGDLN 268 (437)
Q Consensus 191 GNKGaV~ir~~i~~ts~~FVn~HLaAg~~~~~~~rRn~d~~~I~~~~~f~~~~~~~~~~~~~~~i~~~D~vfw~GDLN 268 (437)
.....+++++ .+ +.|.+.|+.+.... .|.+.+..|..-.+ .. ..+.-.+++||||
T Consensus 140 ~~Rpilgi~i--~~--~~ffstH~~a~~~~----da~aiV~~I~~~f~--~~-------------~~~~pw~I~GDFN 194 (271)
T PRK15251 140 ASRPIIGIRI--GN--DVFFSIHALANGGT----DAGAIVRAVHNFFR--PN-------------MRHINWMIAGDFN 194 (271)
T ss_pred cccceEEEEe--cC--eEEEEeeecCCCCc----cHHHHHHHHHHHHh--hc-------------cCCCCEEEeccCC
Confidence 4566777775 33 78999999998421 26667777766431 11 0125688999999
No 22
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=94.40 E-value=0.068 Score=44.94 Aligned_cols=33 Identities=24% Similarity=0.226 Sum_probs=17.5
Q ss_pred CccccceeeecCCceE-EeeecccCccCCCcccc
Q 041371 343 PAWCDRILWKGEGLKQ-LCYVRGESRFSDHRPVY 375 (437)
Q Consensus 343 PSWcDRIL~~~~~~~~-l~Y~~~e~~~SDHrPV~ 375 (437)
.+-=|+||........ ..-.......|||+||.
T Consensus 86 ~s~iD~~~~s~~~~~~~~~~~~~~~~~SDH~~I~ 119 (119)
T PF14529_consen 86 GSRIDLILTSDNLLSWCVWVISSDDSGSDHCPIT 119 (119)
T ss_dssp EE--EEEEEECCGCCCEEEEEETTSSSSSB--EE
T ss_pred CceEEEEEECChHHhcCcEEEeCCCCCCCccCCC
Confidence 4556899987653322 12223456789999984
No 23
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=93.08 E-value=0.77 Score=47.57 Aligned_cols=202 Identities=19% Similarity=0.235 Sum_probs=103.8
Q ss_pred EeechheeeEeeEEecccccccCc-----ceeeeEeecceeeccCceEEEEEEEEeCeEEEEEeeccCCCC---CCccHh
Q 041371 153 ASKQMVGIFLCIWVRADLYKHISN-----LKVSSVGRGIMGYLGNKGSISISMTLHNTTFCFVGTHLASGE---KEGDEI 224 (437)
Q Consensus 153 ~s~qmvGi~L~Vfvr~~l~~~I~~-----v~~~~v~tG~~G~~GNKGaV~ir~~i~~ts~~FVn~HLaAg~---~~~~~~ 224 (437)
.|--| |-.|+||.|-.+..-.-+ -....+-.| -..|-||--..++.+.+..+.+.|+||-|-- +.....
T Consensus 74 HSGim-GaGL~vfSK~PI~~t~~~~y~lNG~p~~i~rG--DWf~GK~Vgl~~l~~~g~~v~~yntHLHAeY~rq~D~YL~ 150 (422)
T KOG3873|consen 74 HSGIM-GAGLCVFSKHPILETLFHRYSLNGYPHAIHRG--DWFGGKGVGLTVLLVGGRMVNLYNTHLHAEYDRQNDEYLC 150 (422)
T ss_pred hcccc-cCceEEeecCchhhhhhhccccCCccceeeec--cccccceeEEEEEeeCCEEeeeeehhccccccccCchhhh
Confidence 34445 888999988764322111 111112222 2357788777788888989999999999852 222334
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccceEEEecccccccc-CCchhHH--HHHHhcCHHHHHhhhhhHHHHH
Q 041371 225 RRNSDVAQILKRTRFSHSYIDPAQPLPPETILEHDVIFWLGDLNYRLA-NGYGDTH--EQLKRNDWQALLEKDQLRLEQR 301 (437)
Q Consensus 225 rRn~d~~~I~~~~~f~~~~~~~~~~~~~~~i~~~D~vfw~GDLNyRI~-~~~~~v~--~li~~~~~~~Ll~~DQL~~~~~ 301 (437)
.|..+-.++-+-++- +....|.||..||||-+=. ++..-.. .+. .-|..+. -||.-..-.
T Consensus 151 HR~~QAwdlaqfi~~--------------t~q~~~vVI~~GDLN~~P~dl~~~ll~~a~l~--daw~~~h-~~q~e~~~~ 213 (422)
T KOG3873|consen 151 HRVAQAWDLAQFIRA--------------TRQNADVVILAGDLNMQPQDLGHKLLLSAGLV--DAWTSLH-LDQCESDSF 213 (422)
T ss_pred HHHHHHHHHHHHHHH--------------HhcCCcEEEEecCCCCCccccceeeeeccchh--hhHhhhc-hhhhcCccc
Confidence 576655555442221 1224699999999998743 2322211 111 1122221 233321111
Q ss_pred cCcccCCccccccccCCCcccccCCCccccccccccCcccCCc----cccceeeecCCce--EEeee----c--c-cCcc
Q 041371 302 AGRVFEGWEEGDIYFPPTYKYITNSDHYVVQTSKSKEKRRTPA----WCDRILWKGEGLK--QLCYV----R--G-ESRF 368 (437)
Q Consensus 302 ~g~~f~gf~E~~I~F~PTYKy~~~sd~Y~~~t~~s~~k~R~PS----WcDRIL~~~~~~~--~l~Y~----~--~-e~~~ 368 (437)
+..-|++..|+--+ +.--+.|. +..+|.|- =-|-||+++.... ...|. + + +..+
T Consensus 214 r~s~~~~l~~g~tc-------d~~~N~y~------~aqk~~ddp~~~RiDYvl~k~~~~~~~~a~~~~t~~rvP~~d~s~ 280 (422)
T KOG3873|consen 214 RLSEDKELVEGNTC-------DSPLNCYT------SAQKREDDPLGKRIDYVLVKPGDCNAKIAEVEFTEPRVPGEDCSY 280 (422)
T ss_pred ccchhhhhhcCCcc-------cCcchhhh------HHHhCCCCccceeeeEEEEcCcceEEEeeeEEecCCCCCCCCCCc
Confidence 11123344455311 11112331 11122221 1488898875432 22221 2 2 4678
Q ss_pred CCCccccceEEEEEeeccC
Q 041371 369 SDHRPVYSFFSVQVNSANK 387 (437)
Q Consensus 369 SDHrPV~a~F~v~v~~~~~ 387 (437)
|||-.+.|++.+.-.....
T Consensus 281 SDH~Al~a~L~I~~~~~~~ 299 (422)
T KOG3873|consen 281 SDHEALMATLKIFKQPPRS 299 (422)
T ss_pred cchhhheeEEEeecCCCCC
Confidence 9999999998886554433
No 24
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=87.04 E-value=1.2 Score=47.76 Aligned_cols=95 Identities=22% Similarity=0.254 Sum_probs=58.2
Q ss_pred EeeEEecccccccCcceee--eEeecceeeccCceEEEEEEEEeCe---EEEEEeeccCCCCCCccHhHHHHHHHHHHHh
Q 041371 162 LCIWVRADLYKHISNLKVS--SVGRGIMGYLGNKGSISISMTLHNT---TFCFVGTHLASGEKEGDEIRRNSDVAQILKR 236 (437)
Q Consensus 162 L~Vfvr~~l~~~I~~v~~~--~v~tG~~G~~GNKGaV~ir~~i~~t---s~~FVn~HLaAg~~~~~~~rRn~d~~~I~~~ 236 (437)
++++-+..+...+.+-.+. -.+.|++..-.=++.|+.+|++-+. -++..|.||--+...+++ |-.+...|++.
T Consensus 204 ~ai~w~~~~F~lv~~~~l~y~~~~~~l~n~~NV~lvv~l~f~~~~~~sq~ilVanTHLl~np~~~~v--rL~Q~~iiL~~ 281 (495)
T KOG2338|consen 204 VAILWHSAKFKLVNHSELNYFDSGSALANRDNVGLVVSLEFRLVDESSQGILVANTHLLFNPSRSDV--RLAQVYIILAE 281 (495)
T ss_pred EEEEEecccceecccchhhcccccchhhcccceeEEEEEEecccCcccCceEEEeeeeeecCcccch--hhHHHHHHHHH
Confidence 4444555544444333332 3455555432225666777766665 799999999999876664 77778788876
Q ss_pred cC-CCCCCCCCCCCCCCCcccccceEEEecccccc
Q 041371 237 TR-FSHSYIDPAQPLPPETILEHDVIFWLGDLNYR 270 (437)
Q Consensus 237 ~~-f~~~~~~~~~~~~~~~i~~~D~vfw~GDLNyR 270 (437)
+. |... -..|=.||++||||=-
T Consensus 282 ~~~~~~~------------~~~~~pi~l~GDfNt~ 304 (495)
T KOG2338|consen 282 LEKMSKS------------SKSHWPIFLCGDFNTE 304 (495)
T ss_pred HHHHHhh------------cccCCCeEEecCCCCC
Confidence 52 1111 0034579999999943
No 25
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=72.95 E-value=1.9 Score=43.95 Aligned_cols=60 Identities=17% Similarity=0.247 Sum_probs=39.8
Q ss_pred cCceEEEEEEEE-eCeEEEEEeeccCCCCCCccHhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccceEEEeccccc
Q 041371 191 GNKGSISISMTL-HNTTFCFVGTHLASGEKEGDEIRRNSDVAQILKRTRFSHSYIDPAQPLPPETILEHDVIFWLGDLNY 269 (437)
Q Consensus 191 GNKGaV~ir~~i-~~ts~~FVn~HLaAg~~~~~~~rRn~d~~~I~~~~~f~~~~~~~~~~~~~~~i~~~D~vfw~GDLNy 269 (437)
+-||+..+.-.. +++.+..++.|..-..-. ....| ++..++.+.++ .. ..-+|+.||||=
T Consensus 173 ~pk~~~~t~~~~~~g~~l~v~~lh~~~~~~~-~~~~~-~ql~~l~~~i~-~~----------------~gpvIlaGDfNa 233 (309)
T COG3021 173 LPKSALATAYPLPDGTELTVVALHAVNFPVG-TDPQR-AQLLELGDQIA-GH----------------SGPVILAGDFNA 233 (309)
T ss_pred CCccceeEEEEcCCCCEEEEEeeccccccCC-ccHHH-HHHHHHHHHHH-cC----------------CCCeEEeecCCC
Confidence 568888777765 468899999998854322 23355 66667766542 00 035899999995
No 26
>PF08002 DUF1697: Protein of unknown function (DUF1697); InterPro: IPR012545 This family contains many hypothetical bacterial proteins.; PDB: 2HIY_B.
Probab=44.32 E-value=6.7 Score=35.16 Aligned_cols=53 Identities=34% Similarity=0.503 Sum_probs=34.1
Q ss_pred eCCCCCCCCCCCcccccCCCCCCcEEEEeeEEee-ecCCCccccccCCchhHHHHHHHHHHhc
Q 041371 7 NVGGKSPHEDLNLRDWLKSTAPADIYVLGFQEIV-PLNAGNVLGAEDNGPAAKWLSLIRQALN 68 (437)
Q Consensus 7 NV~g~~P~~~~~l~~WL~~~~~~DIyviGfQEiV-~Lnagnvl~~ed~~~~~~W~~~i~~~Ln 68 (437)
||||+.--...+|.++|.. +||+++. -++.|||+-. .......=...|.++|.
T Consensus 12 NVGG~nki~MaeLr~~l~~--------~Gf~~V~Tyi~SGNvvf~-~~~~~~~l~~~ie~~l~ 65 (137)
T PF08002_consen 12 NVGGKNKIKMAELREALED--------LGFTNVRTYIQSGNVVFE-SDRDPAELAAKIEKALE 65 (137)
T ss_dssp SBTTBS---HHHHHHHHHH--------CT-EEEEEETTTTEEEEE-ESS-HHHHHHHHHHHHH
T ss_pred ecCCCCcccHHHHHHHHHH--------cCCCCceEEEeeCCEEEe-cCCChHHHHHHHHHHHH
Confidence 9999642223468888875 6999987 8999999876 33344555566666664
No 27
>KOG3870 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.10 E-value=12 Score=39.42 Aligned_cols=19 Identities=32% Similarity=0.683 Sum_probs=15.6
Q ss_pred ccccceEEEeccccccccC
Q 041371 255 ILEHDVIFWLGDLNYRLAN 273 (437)
Q Consensus 255 i~~~D~vfw~GDLNyRI~~ 273 (437)
+..++.||+=||||||==+
T Consensus 349 L~~S~LvIFKGDLNYRKL~ 367 (434)
T KOG3870|consen 349 LQKSSLVIFKGDLNYRKLT 367 (434)
T ss_pred HhhCcEEEEeccccHHHHh
Confidence 4568899999999999544
No 28
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.00 E-value=2.1e+02 Score=29.35 Aligned_cols=37 Identities=30% Similarity=0.370 Sum_probs=25.1
Q ss_pred CCcc-ccceeeecCCceEEeeecccCccCCCccccceEEE
Q 041371 342 TPAW-CDRILWKGEGLKQLCYVRGESRFSDHRPVYSFFSV 380 (437)
Q Consensus 342 ~PSW-cDRIL~~~~~~~~l~Y~~~e~~~SDHrPV~a~F~v 380 (437)
.+.| -|-|++++. ....-.+.+..-|||+||.+.|+.
T Consensus 270 ~~g~PIDhvf~rgl--~~~ka~rl~~~gSDH~PLLveF~~ 307 (309)
T COG3021 270 AFGLPIDHVFYRGL--TVMKARRLPDRGSDHRPLLVEFSY 307 (309)
T ss_pred ccCCCcceeeecCc--chhhhhhccccCCCCCceEEEEEe
Confidence 3444 488888873 222223455688999999999975
No 29
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=23.78 E-value=45 Score=30.08 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=16.4
Q ss_pred cCCCccc-ccCC--CccccccccccCcccCCccc
Q 041371 316 FPPTYKY-ITNS--DHYVVQTSKSKEKRRTPAWC 346 (437)
Q Consensus 316 F~PTYKy-~~~s--d~Y~~~t~~s~~k~R~PSWc 346 (437)
=||-||| +++. ..|. ..-|.|.|-
T Consensus 93 ~paKYky~dp~G~~~TWT-------GrGR~P~wi 119 (135)
T PRK10947 93 RPAKYSYVDENGETKTWT-------GQGRTPAVI 119 (135)
T ss_pred CCCCCcccCCCCCcCccc-------CCCCCCHHH
Confidence 3789999 5433 3453 468999996
No 30
>PF10515 APP_amyloid: beta-amyloid precursor protein C-terminus; InterPro: IPR019543 This is the amyloid, C-terminal, protein of the beta-Amyloid precursor protein (APP) which is a conserved and ubiquitous transmembrane glycoprotein strongly implicated in the pathogenesis of Alzheimer's disease but whose normal biological function is unknown. The C-terminal 100 residues are released and aggregate into amyloid deposits which are strongly implicated in the pathology of Alzheimer's disease plaque-formation. The domain is associated with IPR008154 from INTERPRO, further towards the N terminus. ; PDB: 2ROZ_A 3DXD_D 1X11_D 2LP1_A 2LOH_A 3MXC_L 3MXY_L 3DXC_B 3DXE_D 3L81_B ....
Probab=20.06 E-value=34 Score=25.91 Aligned_cols=7 Identities=71% Similarity=1.379 Sum_probs=5.2
Q ss_pred CCCcccc
Q 041371 317 PPTYKYI 323 (437)
Q Consensus 317 ~PTYKy~ 323 (437)
-|||||-
T Consensus 45 NPTYkyf 51 (52)
T PF10515_consen 45 NPTYKYF 51 (52)
T ss_dssp SCTCHHC
T ss_pred CCceecc
Confidence 4899883
Done!