Query 041371
Match_columns 437
No_of_seqs 260 out of 1094
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 10:35:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/041371.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/041371hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mtc_A Type II inositol-1,4,5- 100.0 4E-93 1.4E-97 710.6 31.2 296 1-387 10-308 (313)
2 4a9c_A Phosphatidylinositol-3, 100.0 2.8E-89 9.5E-94 684.1 27.6 287 1-383 10-314 (316)
3 1i9z_A Synaptojanin, phosphati 100.0 2.7E-84 9.4E-89 657.2 28.8 304 1-397 27-332 (347)
4 2xsw_A 72 kDa inositol polypho 100.0 2.2E-81 7.5E-86 638.0 31.6 291 1-390 28-330 (357)
5 2imq_X Salivary nitrophorin; f 100.0 1.8E-66 6E-71 511.6 21.4 266 1-382 9-282 (282)
6 4gz1_A Tyrosyl-DNA phosphodies 99.4 4.1E-12 1.4E-16 117.5 15.1 65 189-270 98-162 (256)
7 4fva_A 5'-tyrosyl-DNA phosphod 99.3 1.7E-11 6E-16 113.5 12.6 67 191-271 104-170 (256)
8 4f1h_A Tyrosyl-DNA phosphodies 99.3 4.7E-11 1.6E-15 108.4 14.9 62 192-270 95-156 (250)
9 3teb_A Endonuclease/exonucleas 99.2 2E-10 6.8E-15 107.8 14.4 62 190-271 120-181 (266)
10 4gew_A 5'-tyrosyl-DNA phosphod 99.1 1.4E-10 4.9E-15 117.2 11.2 65 192-270 211-275 (362)
11 3g6s_A Putative endonuclease/e 99.1 1.4E-09 4.7E-14 103.0 13.4 60 191-269 114-175 (267)
12 3l1w_A Uncharacterized protein 99.0 3.5E-09 1.2E-13 99.5 15.6 62 190-270 107-170 (257)
13 1ako_A Exonuclease III; AP-end 99.0 2.1E-10 7.2E-15 107.7 5.5 68 191-272 87-157 (268)
14 3mpr_A Putative endonuclease/e 98.9 5.8E-09 2E-13 101.2 12.1 63 191-270 118-182 (298)
15 2jc4_A Exodeoxyribonuclease II 98.5 3.2E-08 1.1E-12 92.1 3.8 53 206-272 98-152 (256)
16 1zwx_A SMCL, sphingomyelinase- 98.5 7.7E-07 2.6E-11 85.3 12.1 71 190-273 128-202 (301)
17 1vyb_A ORF2 contains A reverse 98.4 5.5E-07 1.9E-11 82.5 9.4 54 195-271 97-150 (238)
18 3i41_A Beta-hemolysin; beta to 98.4 9.1E-07 3.1E-11 87.0 9.8 70 190-272 147-220 (317)
19 2jc5_A Exodeoxyribonuclease; h 98.3 9.1E-08 3.1E-12 89.1 1.5 35 2-39 3-37 (259)
20 2ddr_A Sphingomyelin phosphodi 98.2 6.4E-06 2.2E-10 78.9 12.0 69 190-271 128-200 (306)
21 2o3h_A DNA-(apurinic or apyrim 98.2 1.9E-06 6.7E-11 81.9 8.2 52 205-271 130-182 (285)
22 3g91_A MTH0212, exodeoxyribonu 98.2 2.5E-06 8.6E-11 80.6 7.8 35 2-39 5-39 (265)
23 1hd7_A DNA-(apurinic or apyrim 98.2 1.6E-06 5.3E-11 85.0 6.4 52 205-271 163-215 (318)
24 2ei9_A Non-LTR retrotransposon 97.9 3.2E-05 1.1E-09 73.4 9.7 56 192-271 77-132 (240)
25 1wdu_A TRAS1 ORF2P; four-layer 97.2 0.0022 7.6E-08 59.5 11.1 59 191-271 101-159 (245)
26 1sr4_B CDT B, cytolethal diste 97.1 0.0016 5.3E-08 63.3 9.3 38 3-42 7-48 (261)
27 2a40_B Deoxyribonuclease-1; WA 96.7 0.0056 1.9E-07 57.6 9.1 61 193-272 111-174 (260)
28 4b8c_D Glucose-repressible alc 96.7 0.00045 1.5E-08 75.6 1.6 74 203-285 545-619 (727)
29 2j63_A AP-endonuclease; base e 96.6 0.0065 2.2E-07 63.4 9.5 35 346-380 430-466 (467)
30 2f1n_A CDT B, cytolethal diste 95.9 0.04 1.4E-06 53.3 10.2 61 191-270 129-189 (262)
31 3ngq_A CCR4-NOT transcription 95.6 0.043 1.5E-06 56.1 10.0 73 205-285 195-269 (398)
32 2voa_A AF_EXO, XTHA, exodeoxyr 95.6 0.02 7E-07 52.7 6.8 34 2-39 3-36 (257)
33 2voa_A AF_EXO, XTHA, exodeoxyr 69.7 0.55 1.9E-05 42.9 -1.6 35 345-379 216-256 (257)
34 2j63_A AP-endonuclease; base e 61.3 0.64 2.2E-05 48.3 -3.3 35 2-39 151-188 (467)
35 2ddr_A Sphingomyelin phosphodi 53.6 9 0.00031 35.6 3.6 15 366-380 291-305 (306)
36 1sr4_B CDT B, cytolethal diste 35.5 16 0.00056 35.0 2.3 60 191-268 120-179 (261)
37 2hiy_A Hypothetical protein; C 34.5 7.9 0.00027 35.1 -0.2 53 7-68 15-68 (183)
38 3pt1_A UPF0364 protein YMR027W 33.6 8.2 0.00028 40.2 -0.2 17 255-271 374-390 (471)
39 2yka_B ORF57 protein, 52 kDa i 37.1 10 0.00035 23.2 0.0 9 342-350 8-16 (26)
40 2a40_B Deoxyribonuclease-1; WA 25.5 16 0.00054 33.5 0.2 12 367-378 248-259 (260)
No 1
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=100.00 E-value=4e-93 Score=710.64 Aligned_cols=296 Identities=42% Similarity=0.762 Sum_probs=270.4
Q ss_pred CEEEEeeCCCCCCCCCCCcccccCC-CCCCcEEEEeeEEeeecCCCccccccCCchhHHHHHHHHHHhcCCCCccccccc
Q 041371 1 TFVGTWNVGGKSPHEDLNLRDWLKS-TAPADIYVLGFQEIVPLNAGNVLGAEDNGPAAKWLSLIRQALNGNKTDQELSQY 79 (437)
Q Consensus 1 ifvgTWNV~g~~P~~~~~l~~WL~~-~~~~DIyviGfQEiV~Lnagnvl~~ed~~~~~~W~~~i~~~Ln~~~~~~~~~~~ 79 (437)
||||||||||+.|++ +|.+||.. ..+||||||||||+ +|++++++.. |.....+|++.|.++|+.
T Consensus 10 i~v~TwNvng~~~~~--~l~~wL~~~~~~pDI~viGlQE~-~l~~~~~~~~-~~~~~~~W~~~i~~~L~~---------- 75 (313)
T 3mtc_A 10 FFAGTYNVNGQSPKE--CLRLWLSNGIQAPDVYCVGFQEL-DLSKEAFFFH-DTPKEEEWFKAVSEGLHP---------- 75 (313)
T ss_dssp EEEEEEECTTCCCCS--CTHHHHSSSCCCCSEEEEEEECS-CCSHHHHTTC-CCHHHHHHHHHHHHHSCT----------
T ss_pred EEEEEEEcCCccCch--hHHHHhcccCCCCCeEEEEEEec-ccchhhhccc-CcchHHHHHHHHHHhcCC----------
Confidence 699999999999865 58999986 46899999999999 8999887753 455678999999998841
Q ss_pred ccCCCCCCCchhhhcccCCccccccccchhhhccchhhHHhhhhccCCCCCCCCCCCCccCCCCCCCCCeEEEEeechhe
Q 041371 80 YNNATSPQTDQDQQASLKPRISFSDLLSLEDELGQEDFERLLSLQSSSNSSEEDSPSSTCKSGSPMRRRYCLAASKQMVG 159 (437)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~lv~s~qmvG 159 (437)
..+|++|++.||+|
T Consensus 76 ------------------------------------------------------------------~~~Y~~v~s~~lvG 89 (313)
T 3mtc_A 76 ------------------------------------------------------------------DAKYAKVKLIRLVG 89 (313)
T ss_dssp ------------------------------------------------------------------TSCEEEEEEEEETT
T ss_pred ------------------------------------------------------------------CCCEEEEEEechhh
Confidence 24699999999999
Q ss_pred eeEeeEEecccccccCcceeeeEeecceeeccCceEEEEEEEEeCeEEEEEeeccCCCCCCccHhHHHHHHHHHHHhcCC
Q 041371 160 IFLCIWVRADLYKHISNLKVSSVGRGIMGYLGNKGSISISMTLHNTTFCFVGTHLASGEKEGDEIRRNSDVAQILKRTRF 239 (437)
Q Consensus 160 i~L~Vfvr~~l~~~I~~v~~~~v~tG~~G~~GNKGaV~ir~~i~~ts~~FVn~HLaAg~~~~~~~rRn~d~~~I~~~~~f 239 (437)
|+|+||||+++.++|++|++++||||++|++||||||+|||.+++|+|||||||||||+++ .++||+||.+|+++++|
T Consensus 90 l~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~cFVnsHLaA~~~~--~~~Rn~d~~~I~~~l~f 167 (313)
T 3mtc_A 90 IMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEE--YERRNQDYKDICSRMQF 167 (313)
T ss_dssp EEEEEEEEGGGGGGEEEEEEEEEECSGGGTSTTSEEEEEEEEETTEEEEEEEEECCCSGGG--HHHHHHHHHHHHHHCCB
T ss_pred hhhhhhhhhhhhhhcceeEeeeecccccccccCCceEEEEEEECCcEEEEEeeccCCCchH--HHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999999999864 68999999999999999
Q ss_pred CCCCCCCCCCCCCCcccccceEEEecccccccc-CCchhHHHHHHhcCHHHHHhhhhhHHHHHcCcccCCccccccccCC
Q 041371 240 SHSYIDPAQPLPPETILEHDVIFWLGDLNYRLA-NGYGDTHEQLKRNDWQALLEKDQLRLEQRAGRVFEGWEEGDIYFPP 318 (437)
Q Consensus 240 ~~~~~~~~~~~~~~~i~~~D~vfw~GDLNyRI~-~~~~~v~~li~~~~~~~Ll~~DQL~~~~~~g~~f~gf~E~~I~F~P 318 (437)
.... + ...+..|.+||+|||||||||||+ ++.++++++|++++|+.||++|||+++|++|++|.||.|++|+|||
T Consensus 168 ~~~~--~--~~~~~~i~~~d~vfw~GDLNyRi~~~~~~~v~~~i~~~~~~~Ll~~DQL~~~~~~g~~f~gf~E~~I~F~P 243 (313)
T 3mtc_A 168 CQPD--P--SLPPLTISNHDVILWLGDLNYRIEELDVEKVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQP 243 (313)
T ss_dssp CCSC--S--SSCCBCTTSSSEEEEEEECCCCBCSSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSCTTCBCCCCCSCC
T ss_pred CCCC--C--ccCCccccCCceEEEeccccccccCCCHHHHHHHHhcCCHHHHHHhHHHHHHHHcCCccCCcccCCcCcCC
Confidence 7642 1 233567899999999999999997 7889999999999999999999999999999999999999999999
Q ss_pred CcccccCCCccccccccccCcccCCccccceeeecCCceEEeeecc-cCccCCCccccceEEEEEeeccC
Q 041371 319 TYKYITNSDHYVVQTSKSKEKRRTPAWCDRILWKGEGLKQLCYVRG-ESRFSDHRPVYSFFSVQVNSANK 387 (437)
Q Consensus 319 TYKy~~~sd~Y~~~t~~s~~k~R~PSWcDRIL~~~~~~~~l~Y~~~-e~~~SDHrPV~a~F~v~v~~~~~ 387 (437)
||||+.|++.|+ +++|+|+|||||||||++.+++++.|.+. ++++||||||+|.|.++++++..
T Consensus 244 TYKyd~~s~~yd-----ts~k~R~PsWcDRIL~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~~~~~~~~~ 308 (313)
T 3mtc_A 244 TYKYDTGSDDWD-----TSEKCRAPAWCDRILWKGKNITQLSYQSHMALKTSDHKPVSSVFDIGVRVVAH 308 (313)
T ss_dssp CBCBCTTSSSBC-----CSTTCCCCBCCEEEEEEESSEEEEEEEECTTCCSSSSCCEEEEEEEEEEEECC
T ss_pred CccCcCCCcccc-----cccCEecccccceEEEecCCeEEEeeeeccCccCCCccCeEEEEEEEEEEeec
Confidence 999999999995 67899999999999999999999999885 69999999999999999998754
No 2
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=100.00 E-value=2.8e-89 Score=684.09 Aligned_cols=287 Identities=35% Similarity=0.646 Sum_probs=241.7
Q ss_pred CEEEEeeCCCCCCCCCCCcccccCCC------------CCCcEEEEeeEEeeecCCCccccccCCchhHHHHHHHHHHhc
Q 041371 1 TFVGTWNVGGKSPHEDLNLRDWLKST------------APADIYVLGFQEIVPLNAGNVLGAEDNGPAAKWLSLIRQALN 68 (437)
Q Consensus 1 ifvgTWNV~g~~P~~~~~l~~WL~~~------------~~~DIyviGfQEiV~Lnagnvl~~ed~~~~~~W~~~i~~~Ln 68 (437)
||||||||||+.|++ +|.+||.+. .|||||||||||+.+ ...+|++.|+++|+
T Consensus 10 i~vgTwNv~g~~p~~--~L~~wl~~~~~~~~~~~~~~~~~~DiyviG~QE~~~-------------~~~~W~~~i~~~L~ 74 (316)
T 4a9c_A 10 VFIGTWNMGSVPPPK--NVTSWFTSKGLGKTLDEVTVTIPHDIYVFGTQENSV-------------GDREWLDLLRGGLK 74 (316)
T ss_dssp EEEEEEECTTSCCCS--CCHHHHTTCSEEECCCTTGGGSCCSEEEEEEESCCS-------------CHHHHHHHHHHHHH
T ss_pred EEEEEeEcCCcCCCc--chhHhhcccccccCcccccccCCCcEEEEecccccc-------------chhHHHHHHHHHhc
Confidence 799999999999986 579999752 368999999999731 25799999999995
Q ss_pred CCCCcccccccccCCCCCCCchhhhcccCCccccccccchhhhccchhhHHhhhhccCCCCCCCCCCCCccCCCCCCCCC
Q 041371 69 GNKTDQELSQYYNNATSPQTDQDQQASLKPRISFSDLLSLEDELGQEDFERLLSLQSSSNSSEEDSPSSTCKSGSPMRRR 148 (437)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (437)
.. . ..+
T Consensus 75 ~~---------------------------------------------------~-----------------------~~~ 80 (316)
T 4a9c_A 75 EL---------------------------------------------------T-----------------------DLD 80 (316)
T ss_dssp HH---------------------------------------------------H-----------------------SCC
T ss_pred cc---------------------------------------------------c-----------------------CCC
Confidence 20 0 246
Q ss_pred eEEEEeechheeeEeeEEecccccccCcceeeeEeecceeeccCceEEEEEEEEeCeEEEEEeeccCCCCCCccHhHHHH
Q 041371 149 YCLAASKQMVGIFLCIWVRADLYKHISNLKVSSVGRGIMGYLGNKGSISISMTLHNTTFCFVGTHLASGEKEGDEIRRNS 228 (437)
Q Consensus 149 Y~lv~s~qmvGi~L~Vfvr~~l~~~I~~v~~~~v~tG~~G~~GNKGaV~ir~~i~~ts~~FVn~HLaAg~~~~~~~rRn~ 228 (437)
|.+|+++||+||+|+||||.++.++|++|++++||||++|++||||||+|||.+++++|||||||||||+++ .++||+
T Consensus 81 Y~~v~s~~L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~~FVn~HLaAg~~~--~~~Rn~ 158 (316)
T 4a9c_A 81 YRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEK--TARRNQ 158 (316)
T ss_dssp CEEEEEEEETTEEEEEEECGGGGGGEEEEEEEEEEEC------CEEEEEEEEEETTEEEEEEEEECCCSTTC--HHHHHH
T ss_pred EEEEEeeeehheeeeeEEeHHHhhhCcccccceeeeeeeEecCCCceEEEEEEECCcEEEEEEeccccCchH--HHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999864 789999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCCCCCcccccceEEEeccccccccCCchhHHHHHHhcCHHHHHhhhhhHHHHHcCcccCC
Q 041371 229 DVAQILKRTRFSHSYIDPAQPLPPETILEHDVIFWLGDLNYRLANGYGDTHEQLKRNDWQALLEKDQLRLEQRAGRVFEG 308 (437)
Q Consensus 229 d~~~I~~~~~f~~~~~~~~~~~~~~~i~~~D~vfw~GDLNyRI~~~~~~v~~li~~~~~~~Ll~~DQL~~~~~~g~~f~g 308 (437)
||.+|++++.|...... ..+...+||||||||||||||+++.++++++|++++|+.||++|||+++|++|++|.|
T Consensus 159 d~~~I~~~l~f~~~~~~-----~~d~~~~~d~vfw~GDLNyRi~~~~~~v~~~i~~~~~~~Ll~~DQL~~e~~~g~~F~g 233 (316)
T 4a9c_A 159 NYLDILRLLSLGDRQLN-----AFDISLRFTHLFWFGDLNYRLDMDIQEILNYISRKEFEPLLRVDQLNLEREKHKVFLR 233 (316)
T ss_dssp HHHHHHHHCCC------------CCTTTTSSEEEEEEECCCCBSSCHHHHHHHHHTTCCHHHHTTBHHHHHHHTTSSSTT
T ss_pred HHHHHHHhCCCCCCCcC-----ccccCCcCCeEEEcCCccCCcCCCHHHHHHHHhcccHHHHhccChHHHHHhcCCcccc
Confidence 99999999999753111 1233467899999999999999999999999999999999999999999999999999
Q ss_pred ccccccccCCCcccccCCC-ccccccc-cccCcccCCccccceeeecC---CceEEeeec-ccCccCCCccccceEEEEE
Q 041371 309 WEEGDIYFPPTYKYITNSD-HYVVQTS-KSKEKRRTPAWCDRILWKGE---GLKQLCYVR-GESRFSDHRPVYSFFSVQV 382 (437)
Q Consensus 309 f~E~~I~F~PTYKy~~~sd-~Y~~~t~-~s~~k~R~PSWcDRIL~~~~---~~~~l~Y~~-~e~~~SDHrPV~a~F~v~v 382 (437)
|+|++|+|||||||+.|++ .|++++. ++++|+|+|||||||||++. .+.++.|.+ .++++||||||+|.|.|+|
T Consensus 234 f~E~~i~F~PTYKy~~~s~~~y~~~~~~~~~~k~R~PaWcDRIL~~~~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~v~V 313 (316)
T 4a9c_A 234 FSEEEISFPPTYRYERGSRDTYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIVTSDHSPVFGTFEVGV 313 (316)
T ss_dssp CBCCCCCSCCCBCBCTTCSSCBCCC--------CCCCBCCEEEEEEECTTCCEEEEEEEECSSCCSSSSCCEEEEEEEEC
T ss_pred cccCCcccCCCccccCCCcccccccccccccccccCCcccceEEeccCCCCceEEeeecccCCcCCCCcccEEEEEEEEE
Confidence 9999999999999999995 5765432 25678899999999999975 477889986 5899999999999999998
Q ss_pred e
Q 041371 383 N 383 (437)
Q Consensus 383 ~ 383 (437)
.
T Consensus 314 ~ 314 (316)
T 4a9c_A 314 T 314 (316)
T ss_dssp C
T ss_pred E
Confidence 5
No 3
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=100.00 E-value=2.7e-84 Score=657.24 Aligned_cols=304 Identities=34% Similarity=0.611 Sum_probs=269.6
Q ss_pred CEEEEeeCCCCCCCCCCCcccccCC--CCCCcEEEEeeEEeeecCCCccccccCCchhHHHHHHHHHHhcCCCCcccccc
Q 041371 1 TFVGTWNVGGKSPHEDLNLRDWLKS--TAPADIYVLGFQEIVPLNAGNVLGAEDNGPAAKWLSLIRQALNGNKTDQELSQ 78 (437)
Q Consensus 1 ifvgTWNV~g~~P~~~~~l~~WL~~--~~~~DIyviGfQEiV~Lnagnvl~~ed~~~~~~W~~~i~~~Ln~~~~~~~~~~ 78 (437)
||||||||||+.|+ .+|.+||.+ ..+||||||||||||+|+++++++. |+.+...|++.|+++|+...
T Consensus 27 i~v~TwNv~g~~~~--~~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~~-~~~~~~~w~~~i~~~L~~~~------- 96 (347)
T 1i9z_A 27 IFVASYNLNGCSAT--TKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISA-DPAKRREWESCVKRLLNGKC------- 96 (347)
T ss_dssp EEEEEEECTTCCCC--SCCHHHHSCSSSCCCSEEEEEEECSSCCC-----CC-CHHHHHHHHHHHHHHHHHTC-------
T ss_pred EEEEeEecCCCCCc--hhHHHHhccccCCCCCEEEEEeEEeecCchhhhccc-CchhHHHHHHHHHHHHhhcc-------
Confidence 69999999999984 469999986 3689999999999999999999974 66678899999999996310
Q ss_pred cccCCCCCCCchhhhcccCCccccccccchhhhccchhhHHhhhhccCCCCCCCCCCCCccCCCCCCCCCeEEEEeechh
Q 041371 79 YYNNATSPQTDQDQQASLKPRISFSDLLSLEDELGQEDFERLLSLQSSSNSSEEDSPSSTCKSGSPMRRRYCLAASKQMV 158 (437)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~lv~s~qmv 158 (437)
+.+..|.++.+.+|+
T Consensus 97 -----------------------------------------------------------------~~~~~Y~~v~s~~l~ 111 (347)
T 1i9z_A 97 -----------------------------------------------------------------TSGPGYVQLRSGQLV 111 (347)
T ss_dssp -----------------------------------------------------------------CSSCCEEEEEEEEET
T ss_pred -----------------------------------------------------------------cCCCceeEEEEeecc
Confidence 003579999999999
Q ss_pred eeeEeeEEecccccccCcceeeeEeecceeeccCceEEEEEEEEeCeEEEEEeeccCCCCCCccHhHHHHHHHHHHHhcC
Q 041371 159 GIFLCIWVRADLYKHISNLKVSSVGRGIMGYLGNKGSISISMTLHNTTFCFVGTHLASGEKEGDEIRRNSDVAQILKRTR 238 (437)
Q Consensus 159 Gi~L~Vfvr~~l~~~I~~v~~~~v~tG~~G~~GNKGaV~ir~~i~~ts~~FVn~HLaAg~~~~~~~rRn~d~~~I~~~~~ 238 (437)
|++|+||+|.++.++|++|++++++||++|++||||||+++|.+++++||||||||+||+++ ..+||+|+.+|++++.
T Consensus 112 g~~L~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gnKGav~vr~~~~~~~l~fvn~HLaa~~~~--~~~R~~d~~~I~~~l~ 189 (347)
T 1i9z_A 112 GTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGYTN--YDERDHDYRTIASGLR 189 (347)
T ss_dssp TEEEEEEEEGGGGGGEEEEEEEEEECCCC----CCEEEEEEEEETTEEEEEEEEECCCCSSC--HHHHHHHHHHHHHHCC
T ss_pred ceEEEEEEehHhhhhccceeeeeEeccCCCccCCCceEEEEEEECCeEEEEEEecCCCCCcc--HHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999864 5679999999999999
Q ss_pred CCCCCCCCCCCCCCCcccccceEEEeccccccccCCchhHHHHHHhcCHHHHHhhhhhHHHHHcCcccCCccccccccCC
Q 041371 239 FSHSYIDPAQPLPPETILEHDVIFWLGDLNYRLANGYGDTHEQLKRNDWQALLEKDQLRLEQRAGRVFEGWEEGDIYFPP 318 (437)
Q Consensus 239 f~~~~~~~~~~~~~~~i~~~D~vfw~GDLNyRI~~~~~~v~~li~~~~~~~Ll~~DQL~~~~~~g~~f~gf~E~~I~F~P 318 (437)
|... ..|.+||++||+|||||||+++.+.+.++|++++|..||++|||+.++++|++|.||.|++|+|+|
T Consensus 190 f~~~----------~~i~~~d~v~~~GDlNyRi~~~~~~v~~~i~~~~~~~Ll~~DqL~~~~~~~~~f~~f~E~~i~F~P 259 (347)
T 1i9z_A 190 FRRG----------RSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPP 259 (347)
T ss_dssp CGGG----------CCTTSSSEEEEEEECCCCBSSCHHHHHHHHHTTCHHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCC
T ss_pred cCcc----------cccccCccEEEecccccccCCCHHHHHHHHhhccHHHhhcccHHHHHHhcCCcccccccCCCCCCC
Confidence 8753 357789999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccCCCccccccccccCcccCCccccceeeecCCceEEeeecccCccCCCccccceEEEEEeeccCCCCccccCCC
Q 041371 319 TYKYITNSDHYVVQTSKSKEKRRTPAWCDRILWKGEGLKQLCYVRGESRFSDHRPVYSFFSVQVNSANKPKPRTINPKS 397 (437)
Q Consensus 319 TYKy~~~sd~Y~~~t~~s~~k~R~PSWcDRIL~~~~~~~~l~Y~~~e~~~SDHrPV~a~F~v~v~~~~~~~~~~i~~~~ 397 (437)
||||+.+++.|+ +++|+|+|||||||||++ .++++.|.+.++++||||||+|.|.+.|+.+++++++++....
T Consensus 260 TYK~~~~~~~yd-----~s~k~R~PsWcDRIL~~~-~l~~~~Y~~~~~~~SDH~PV~a~f~~~v~~~~~~~~~~~~~~~ 332 (347)
T 1i9z_A 260 TYKFDIGTDIYD-----TSDKHRVPAWTDRILYRG-ELVPHSYQSVPLYYSDHRPIYATYEANIVKVDREKKKILFEEL 332 (347)
T ss_dssp CBCBCTTSSCBC-----CSTTCCCCBCCEEEEEES-SCEEEEEEECCCCSSSBCCEEEEEEEEEEEECHHHHHHHHHHH
T ss_pred CcccCCCCcccc-----ccccccCCcccceEEEeC-CEEEEEEEecCccCCCcCCceeEEEEEEecCCHHHHHHHHHHH
Confidence 999999999995 678999999999999998 8999999998899999999999999999999999988865443
No 4
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=100.00 E-value=2.2e-81 Score=637.96 Aligned_cols=291 Identities=32% Similarity=0.576 Sum_probs=253.1
Q ss_pred CEEEEeeCCCCCCCCCCCcccccCC---CCCCcEEEEeeEEeeecCCCccccccCCchhHHHHHHHHHHhcCCCCccccc
Q 041371 1 TFVGTWNVGGKSPHEDLNLRDWLKS---TAPADIYVLGFQEIVPLNAGNVLGAEDNGPAAKWLSLIRQALNGNKTDQELS 77 (437)
Q Consensus 1 ifvgTWNV~g~~P~~~~~l~~WL~~---~~~~DIyviGfQEiV~Lnagnvl~~ed~~~~~~W~~~i~~~Ln~~~~~~~~~ 77 (437)
||||||||||..+.. .+|.+||.+ ..+||||||||||+++ ....|.+.|.++|+
T Consensus 28 i~v~TwNv~g~~~~~-~~L~~~l~~~~~~~~pDI~viGlQEi~~-------------~~~~W~~~l~~~L~--------- 84 (357)
T 2xsw_A 28 LFVATWNMQGQKELP-PSLDEFLLPAEADYAQDLYVIGVQEGCS-------------DRREWETRLQETLG--------- 84 (357)
T ss_dssp EEEEEEECTTCSSCC-SCCHHHHSCTTCCSCCSEEEEEEESCCS-------------CHHHHHHHHHHHHC---------
T ss_pred EEEEEEecCCCCCCc-ccHHHHhccccccCCCCEEEEEeeeccc-------------hHHHHHHHHHHHhC---------
Confidence 689999999864332 268999964 3579999999999853 14689998888772
Q ss_pred ccccCCCCCCCchhhhcccCCccccccccchhhhccchhhHHhhhhccCCCCCCCCCCCCccCCCCCCCCCeEEEEeech
Q 041371 78 QYYNNATSPQTDQDQQASLKPRISFSDLLSLEDELGQEDFERLLSLQSSSNSSEEDSPSSTCKSGSPMRRRYCLAASKQM 157 (437)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~lv~s~qm 157 (437)
..|+++.+.+|
T Consensus 85 ---------------------------------------------------------------------~~Y~~v~s~~l 95 (357)
T 2xsw_A 85 ---------------------------------------------------------------------PHYVLLSSAAH 95 (357)
T ss_dssp ---------------------------------------------------------------------TTEEEEEEEEE
T ss_pred ---------------------------------------------------------------------Ccccchhhhhh
Confidence 25999999999
Q ss_pred heeeEeeEEecccccccCcceeeeEeecceeeccCceEEEEEEEEeCeEEEEEeeccCCCCCCccHhHHHHHHHHHHHhc
Q 041371 158 VGIFLCIWVRADLYKHISNLKVSSVGRGIMGYLGNKGSISISMTLHNTTFCFVGTHLASGEKEGDEIRRNSDVAQILKRT 237 (437)
Q Consensus 158 vGi~L~Vfvr~~l~~~I~~v~~~~v~tG~~G~~GNKGaV~ir~~i~~ts~~FVn~HLaAg~~~~~~~rRn~d~~~I~~~~ 237 (437)
+|++|+||+|.++.++|+++++++|+||++|++||||||+|||.+++++||||||||+||+++ .++||+||.+|++++
T Consensus 96 ~g~~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gNKGav~vr~~~~~t~~~Fvn~HLaa~~~~--~~~Rn~d~~~I~~~l 173 (357)
T 2xsw_A 96 GVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFLFITSHFTSGDGK--VAERLLDYTRTVQAL 173 (357)
T ss_dssp TTEEEEEEEEGGGGGGBBCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEECCCSTTC--HHHHHHHHHHHHHHC
T ss_pred hhEEEEEEEchHHhhcCceeEecccccccccccccccEEEEEEEECCeEEEEEEEccCCCCch--HHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999864 679999999999999
Q ss_pred CCCCCCCC--CCCCCCCCcccccceEEEeccccccccCCchhHHHHHH---hcCHHHHHhhhhhHHHHHcCcccCCcccc
Q 041371 238 RFSHSYID--PAQPLPPETILEHDVIFWLGDLNYRLANGYGDTHEQLK---RNDWQALLEKDQLRLEQRAGRVFEGWEEG 312 (437)
Q Consensus 238 ~f~~~~~~--~~~~~~~~~i~~~D~vfw~GDLNyRI~~~~~~v~~li~---~~~~~~Ll~~DQL~~~~~~g~~f~gf~E~ 312 (437)
.|+..... |......+.+.+||+|||+|||||||+++++++.++|+ .++|+.||++|||+.++++|++|.||+|+
T Consensus 174 ~f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~~~~~~v~~~i~~~~~~~~~~Ll~~DQL~~~~~~g~~F~gf~E~ 253 (357)
T 2xsw_A 174 VLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSGGRTVVDALLCQGLVVDVPALLQHDQLIREMRKGSIFKGFQEP 253 (357)
T ss_dssp CCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBSSCHHHHHHHHC---CCCHHHHHTTBHHHHHHHHTSSSTTCBCC
T ss_pred cccccccccccccccccccccccceEEEecccCcccccchHHHHHHHhhcchhhHHHHHhcChhHHHHhccccccCcccc
Confidence 99764211 00001123456899999999999999999989999886 47899999999999999999999999999
Q ss_pred ccccCCCcccccCCCccccccccccCcccCCccccceeeecC---CceEEeeec-ccCccCCCccccceEEEEEeeccCC
Q 041371 313 DIYFPPTYKYITNSDHYVVQTSKSKEKRRTPAWCDRILWKGE---GLKQLCYVR-GESRFSDHRPVYSFFSVQVNSANKP 388 (437)
Q Consensus 313 ~I~F~PTYKy~~~sd~Y~~~t~~s~~k~R~PSWcDRIL~~~~---~~~~l~Y~~-~e~~~SDHrPV~a~F~v~v~~~~~~ 388 (437)
+|+|||||||+.|++.|+ +++|+|+|||||||||++. .++++.|.+ .++++||||||+|.|.+.++...+.
T Consensus 254 ~I~F~PTYKy~~~t~~Yd-----ts~k~R~PaWcDRIL~~~~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~v~v~~~~~~ 328 (357)
T 2xsw_A 254 DIHFLPSYKFDIGKDTYD-----STSKQRTPSYTDRVLYRSRHKGDICPVSYSSCPGIKTSDHRPVYGLFRVKVRPGRDN 328 (357)
T ss_dssp CCCSCCCBCBCTTSSSBC-----CSTTCCCCBCCEEEEEEESSTTSEEEEEEEECTTCCSSSSCCEEEEEEEECCCCCSC
T ss_pred CCCCCCCccccCCCcccc-----ccCCCCCCcccceEEEecCCCCceEEEEeEecccccCCCcCCceeEEEEEEecCCcc
Confidence 999999999999999995 5689999999999999964 588999988 4799999999999999999877665
Q ss_pred CC
Q 041371 389 KP 390 (437)
Q Consensus 389 ~~ 390 (437)
.+
T Consensus 329 ip 330 (357)
T 2xsw_A 329 IP 330 (357)
T ss_dssp SC
T ss_pred cc
Confidence 44
No 5
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=100.00 E-value=1.8e-66 Score=511.63 Aligned_cols=266 Identities=23% Similarity=0.412 Sum_probs=231.0
Q ss_pred CEEEEeeCCCCCCCCCCCcccccCC--CCCCcEEEEeeEEeeecCCCccccccCCchhHHHHHHHHHHhcCCCCcccccc
Q 041371 1 TFVGTWNVGGKSPHEDLNLRDWLKS--TAPADIYVLGFQEIVPLNAGNVLGAEDNGPAAKWLSLIRQALNGNKTDQELSQ 78 (437)
Q Consensus 1 ifvgTWNV~g~~P~~~~~l~~WL~~--~~~~DIyviGfQEiV~Lnagnvl~~ed~~~~~~W~~~i~~~Ln~~~~~~~~~~ 78 (437)
|+|+||||++..|++ +|.+|+.. ..+||||||||||++ +++.+. .....|.+.|.++|+
T Consensus 9 i~V~T~Nv~~~~~~~--~l~~wl~~~~~~~pDI~viglQEv~-~~~~~~------~~~~~w~~~l~~~L~---------- 69 (282)
T 2imq_X 9 VHTVSWNSGHERAPT--NLEELLGLNSGETPDVIAVAVQGFG-FQTDKP------QQGPACVKNFQSLLT---------- 69 (282)
T ss_dssp EEEEEEEEETCCCCS--CCHHHHTCTTSCCCSEEEEEEEESC-TTTCTT------CCHHHHHHHHHHHHH----------
T ss_pred EEEEEEeCCCCcCch--hHHHHhcccccCCCCEEEEEeeeec-cccccc------hhhHHHHHHHHHhcC----------
Confidence 689999998887764 57899973 468999999999986 454431 236789999888873
Q ss_pred cccCCCCCCCchhhhcccCCccccccccchhhhccchhhHHhhhhccCCCCCCCCCCCCccCCCCCCCCCeEEEEe--ec
Q 041371 79 YYNNATSPQTDQDQQASLKPRISFSDLLSLEDELGQEDFERLLSLQSSSNSSEEDSPSSTCKSGSPMRRRYCLAAS--KQ 156 (437)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~lv~s--~q 156 (437)
...|.++.+ .+
T Consensus 70 -------------------------------------------------------------------~~~Y~~v~~~~~~ 82 (282)
T 2imq_X 70 -------------------------------------------------------------------SKGYTKLKNTITE 82 (282)
T ss_dssp -------------------------------------------------------------------HTTEEEEEEEECS
T ss_pred -------------------------------------------------------------------CCceEEEEeccCc
Confidence 125888988 89
Q ss_pred hheeeEeeEEecccccccCcceeeeEeecceeeccCceEEEEEEEEeCeEEEEEeeccCCCCCCccHhHHHHHHHHHHHh
Q 041371 157 MVGIFLCIWVRADLYKHISNLKVSSVGRGIMGYLGNKGSISISMTLHNTTFCFVGTHLASGEKEGDEIRRNSDVAQILKR 236 (437)
Q Consensus 157 mvGi~L~Vfvr~~l~~~I~~v~~~~v~tG~~G~~GNKGaV~ir~~i~~ts~~FVn~HLaAg~~~~~~~rRn~d~~~I~~~ 236 (437)
|+|++++||+|.++.+.|+++++ +|++|.+||||||+++|.+++++||||||||+|++.+ .++|++|+..|+++
T Consensus 83 ~~G~~l~vf~k~~~~~~i~~~~~----~~~~g~~g~kGav~~r~~~~~~~~~fvn~HL~~~~~~--~~~R~~~~~~I~~~ 156 (282)
T 2imq_X 83 TMGLTVYCLEKHLDQNTLKNETI----IVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVT--STNTKYAYDTRLDY 156 (282)
T ss_dssp SEEEEEEEEGGGCCTTTCCCEEE----EEECSTTSCSEEEEEEEEETTEEEEEEEEECCTTCCC--TTSSSSSCCGGGCT
T ss_pred eeEEEEEEEEccccCccceeeee----ccccccccCCceEEEEEEECCEEEEEEEECCCCCCch--HHHHHHHHHHHHHh
Confidence 99999999999999888887765 5667889999999999999999999999999999643 45799999999876
Q ss_pred cCCCCCCCCCCCCCCCCcccccceEEEeccccccccCCchhHHHHHHhcCHHHHHhhhhhHHHHHcCcccCCcccccccc
Q 041371 237 TRFSHSYIDPAQPLPPETILEHDVIFWLGDLNYRLANGYGDTHEQLKRNDWQALLEKDQLRLEQRAGRVFEGWEEGDIYF 316 (437)
Q Consensus 237 ~~f~~~~~~~~~~~~~~~i~~~D~vfw~GDLNyRI~~~~~~v~~li~~~~~~~Ll~~DQL~~~~~~g~~f~gf~E~~I~F 316 (437)
+.+ +.++|++||+||||||++.+.+++.++|++++|..|+++|||..+++ |.+|.||.|++|+|
T Consensus 157 ~~~---------------~~~~~~vi~~GDfN~r~~~~~~~~~~~i~~~~~~~l~~~DqL~~~~~-~~~f~~f~e~~i~f 220 (282)
T 2imq_X 157 SKK---------------DDPSDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQLKKAKE-QKLFDGWTEPQVTF 220 (282)
T ss_dssp TSS---------------SSCCSEEEEEEECSCCBCSCHHHHHHHHHTTCHHHHHTTBTHHHHHH-TTSSTTCBCCCCCS
T ss_pred hhc---------------cCccceEEEecccccccCCCHHHHHHHHhhccHHHHhhhhHHHHhhc-cccccccccCCcCC
Confidence 532 33678999999999999999999999999999999999999999999 99999999999999
Q ss_pred CCCcccccCCCccccccccccCcccCCccccceeeecC---CceEEeeecc-cCccCCCccccceEEEEE
Q 041371 317 PPTYKYITNSDHYVVQTSKSKEKRRTPAWCDRILWKGE---GLKQLCYVRG-ESRFSDHRPVYSFFSVQV 382 (437)
Q Consensus 317 ~PTYKy~~~sd~Y~~~t~~s~~k~R~PSWcDRIL~~~~---~~~~l~Y~~~-e~~~SDHrPV~a~F~v~v 382 (437)
+|||||+.++++|+ ++|+|||||||||++. .++++.|.+. ++.+||||||+|.|.+++
T Consensus 221 ~PTYk~~~~~~~y~--------~~R~Psw~DrIl~~~~~~~~~~~~~y~~~~~~~~SDH~PV~a~f~~~~ 282 (282)
T 2imq_X 221 KPTYKFKPNTDEYD--------LSATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKFRVTL 282 (282)
T ss_dssp CCCBCBCTTSSCBC--------TTSCCBCCEEEEEECSSSCCEEEEEEEECTTCCSSSSCCEEEEEEEEC
T ss_pred CCCccccCCCcccc--------ccCCccccceEEEecCCCCceEeeEecCCCCCCCCCcCCeEEEEEEEC
Confidence 99999999999995 3699999999999963 6889999887 789999999999999864
No 6
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.40 E-value=4.1e-12 Score=117.46 Aligned_cols=65 Identities=18% Similarity=0.382 Sum_probs=47.7
Q ss_pred eccCceEEEEEEEEeCeEEEEEeeccCCCCCCccHhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccceEEEecccc
Q 041371 189 YLGNKGSISISMTLHNTTFCFVGTHLASGEKEGDEIRRNSDVAQILKRTRFSHSYIDPAQPLPPETILEHDVIFWLGDLN 268 (437)
Q Consensus 189 ~~GNKGaV~ir~~i~~ts~~FVn~HLaAg~~~~~~~rRn~d~~~I~~~~~f~~~~~~~~~~~~~~~i~~~D~vfw~GDLN 268 (437)
....++.+.+.+.+.+..+.++|+||.++... ...|..++..|++.++- ......+|++||||
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~--~~~~~~q~~~~~~~l~~---------------~~~~~pvIl~GDfN 160 (256)
T 4gz1_A 98 TKMMRNLLCVNVSLGGNEFCLMTSHLESTREH--SAERIRQLKTVLGKMQE---------------APDSTTVIFAGDTN 160 (256)
T ss_dssp CSSCCEEEEEEEEETTEEEEEEECBCCCSGGG--HHHHHHHHHHHHHHHHH---------------SCTTSEEEEEEECC
T ss_pred ccccceEEEEEEEeCCEEEEEEeecccccccc--hhhhhHHHHHHhhhhhh---------------ccCcceEEEeCccC
Confidence 34567888899999999999999999987642 34566777777776521 01234689999999
Q ss_pred cc
Q 041371 269 YR 270 (437)
Q Consensus 269 yR 270 (437)
.+
T Consensus 161 ~~ 162 (256)
T 4gz1_A 161 LR 162 (256)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 7
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.29 E-value=1.7e-11 Score=113.46 Aligned_cols=67 Identities=18% Similarity=0.200 Sum_probs=44.7
Q ss_pred cCceEEEEEEEEeCeEEEEEeeccCCCCCCccHhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccceEEEecccccc
Q 041371 191 GNKGSISISMTLHNTTFCFVGTHLASGEKEGDEIRRNSDVAQILKRTRFSHSYIDPAQPLPPETILEHDVIFWLGDLNYR 270 (437)
Q Consensus 191 GNKGaV~ir~~i~~ts~~FVn~HLaAg~~~~~~~rRn~d~~~I~~~~~f~~~~~~~~~~~~~~~i~~~D~vfw~GDLNyR 270 (437)
+.++.+.+.+.+.+..+.++|+||.+.... ...|..++..++..+.... .......+|++||||-+
T Consensus 104 ~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~--~~~~~~q~~~~~~~~~~~~------------~~~~~~~vIl~GDfN~~ 169 (256)
T 4fva_A 104 MYRTLQILEGSIGGLKVFLLNTHLESTREH--RPQRCAQFGFCMDKVREII------------AQNPGALVFFGGDLNLR 169 (256)
T ss_dssp SCCEEEEEEEEETTEEEEEEEEECCCSGGG--HHHHHHHHHHHHHHHHHHH------------HHSTTCEEEEEEECCCC
T ss_pred ccceeEEEEEEeCCeEEEEEEecCCCCCcc--hHHHHHHHHHHHHHhhhhh------------hccCCCcEEEeccCCCC
Confidence 457788889999999999999999987532 3345555555554321000 00123579999999965
Q ss_pred c
Q 041371 271 L 271 (437)
Q Consensus 271 I 271 (437)
-
T Consensus 170 ~ 170 (256)
T 4fva_A 170 D 170 (256)
T ss_dssp G
T ss_pred c
Confidence 3
No 8
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.29 E-value=4.7e-11 Score=108.39 Aligned_cols=62 Identities=18% Similarity=0.362 Sum_probs=45.1
Q ss_pred CceEEEEEEEEeCeEEEEEeeccCCCCCCccHhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccceEEEecccccc
Q 041371 192 NKGSISISMTLHNTTFCFVGTHLASGEKEGDEIRRNSDVAQILKRTRFSHSYIDPAQPLPPETILEHDVIFWLGDLNYR 270 (437)
Q Consensus 192 NKGaV~ir~~i~~ts~~FVn~HLaAg~~~~~~~rRn~d~~~I~~~~~f~~~~~~~~~~~~~~~i~~~D~vfw~GDLNyR 270 (437)
..+.+.+.+.+.+..+.++++||.+... ....|..++.+|++.++= ......+|++||||-.
T Consensus 95 ~~~~~~~~~~~~~~~~~v~~~hl~~~~~--~~~~r~~q~~~~~~~l~~---------------~~~~~pvIl~GDfN~~ 156 (250)
T 4f1h_A 95 MRNLLIAQVTFSGQKLYLMTSHLESCKN--QSQERTKQLRVVLQKIKE---------------APEDAIVIFAGDTNLR 156 (250)
T ss_dssp CCEEEEEEEEETTEEEEEEECBCCCSGG--GHHHHHHHHHHHHHHHHH---------------SCTTEEEEEEEECCCC
T ss_pred cceEEEEEEecCCcEEEEeccccccccc--cHHHHHHHHHHHHHHHHh---------------cCCCCCEEEEEecCCC
Confidence 4567778888999999999999998754 244577778888776520 0123468999999953
No 9
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.20 E-value=2e-10 Score=107.78 Aligned_cols=62 Identities=19% Similarity=0.353 Sum_probs=48.3
Q ss_pred ccCceEEEEEEEEeCeEEEEEeeccCCCCCCccHhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccceEEEeccccc
Q 041371 190 LGNKGSISISMTLHNTTFCFVGTHLASGEKEGDEIRRNSDVAQILKRTRFSHSYIDPAQPLPPETILEHDVIFWLGDLNY 269 (437)
Q Consensus 190 ~GNKGaV~ir~~i~~ts~~FVn~HLaAg~~~~~~~rRn~d~~~I~~~~~f~~~~~~~~~~~~~~~i~~~D~vfw~GDLNy 269 (437)
+..+|.+.+++.+.+..+.++|+||.+.... ...|..++..|++.+. ....+|++||||-
T Consensus 120 ~~~r~~~~~~~~~~~~~~~v~~~Hl~~~~~~--~~~r~~q~~~l~~~~~------------------~~~~~il~GDfN~ 179 (266)
T 3teb_A 120 ISARRIVSITINYEGQDIEFYSCHMNLPNCE--TEDMGKNIQTILNRTQ------------------NSNLKILMGDFNT 179 (266)
T ss_dssp TTCCEEEEEEEEETTEEEEEEEEECCCTTCT--TCCHHHHHHHHHTSSC------------------SCCEEEEEEECCC
T ss_pred cccceEEEEEEEeCCeEEEEEEecCCCccCC--hHHHHHHHHHHHHHHh------------------cCCcEEEEeECCC
Confidence 4568999999999999999999999987532 2347778888876431 1367999999998
Q ss_pred cc
Q 041371 270 RL 271 (437)
Q Consensus 270 RI 271 (437)
.-
T Consensus 180 ~~ 181 (266)
T 3teb_A 180 DA 181 (266)
T ss_dssp CT
T ss_pred CC
Confidence 65
No 10
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.14 E-value=1.4e-10 Score=117.18 Aligned_cols=65 Identities=18% Similarity=0.245 Sum_probs=44.8
Q ss_pred CceEEEEEEEEeCeEEEEEeeccCCCCCCccHhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccceEEEecccccc
Q 041371 192 NKGSISISMTLHNTTFCFVGTHLASGEKEGDEIRRNSDVAQILKRTRFSHSYIDPAQPLPPETILEHDVIFWLGDLNYR 270 (437)
Q Consensus 192 NKGaV~ir~~i~~ts~~FVn~HLaAg~~~~~~~rRn~d~~~I~~~~~f~~~~~~~~~~~~~~~i~~~D~vfw~GDLNyR 270 (437)
..+++.+.+.+.+..|+++|+||.++.. ...+|..++..++..+.-.. .......+|++||||-+
T Consensus 211 ~r~~l~~~i~~~g~~l~v~ntHL~s~~~--~~~~R~~Q~~~l~~~~~~~~------------~~~~~~pvIl~GDFN~~ 275 (362)
T 4gew_A 211 YRTLQILEGSIGGLKVFLLNTHLESTRE--HRPQRCAQFGFCMDKVREII------------AQNPGALVFFGGDLNLR 275 (362)
T ss_dssp CCEEEEEEEEETTEEEEEEEEECCCSGG--GHHHHHHHHHHHHHHHHHHH------------HHCTTCEEEEEEECCCC
T ss_pred cceEEEEEEEECCEEEEEEEecCCcccc--chhHHHHHHHHHHHHhHhhh------------hcCCCCCeEEeecCCCC
Confidence 4678888999999999999999998753 23467777766665432100 00123569999999965
No 11
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.06 E-value=1.4e-09 Score=102.97 Aligned_cols=60 Identities=18% Similarity=0.188 Sum_probs=42.4
Q ss_pred cCceEEEEEEEE--eCeEEEEEeeccCCCCCCccHhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccceEEEecccc
Q 041371 191 GNKGSISISMTL--HNTTFCFVGTHLASGEKEGDEIRRNSDVAQILKRTRFSHSYIDPAQPLPPETILEHDVIFWLGDLN 268 (437)
Q Consensus 191 GNKGaV~ir~~i--~~ts~~FVn~HLaAg~~~~~~~rRn~d~~~I~~~~~f~~~~~~~~~~~~~~~i~~~D~vfw~GDLN 268 (437)
.+++++.+.+.. .+..|+++|+||.+.. ...|.++...|++.+. .+.....+|++||||
T Consensus 114 ~~R~~~~~~~~~~~~~~~~~v~~~Hl~~~~----~~~R~~q~~~l~~~l~---------------~~~~~~pvIl~GDfN 174 (267)
T 3g6s_A 114 CVRIATWAKFKDKATGKIFMAVNTHFDHVG----EEARRQSALLIIRKIK---------------EIVGERPAVVTGDFN 174 (267)
T ss_dssp SCCEEEEEEEEETTTCCEEEEEEEECCSSC----HHHHHHHHHHHHHHHH---------------HHTTTSCEEEEEECS
T ss_pred CcceEEEEEEEEcCCCCEEEEEEeCCCCCC----HHHHHHHHHHHHHHHH---------------HhcCCCCEEEEeECC
Confidence 467888888884 5789999999998753 3467676666666542 011134689999999
Q ss_pred c
Q 041371 269 Y 269 (437)
Q Consensus 269 y 269 (437)
-
T Consensus 175 ~ 175 (267)
T 3g6s_A 175 V 175 (267)
T ss_dssp S
T ss_pred C
Confidence 6
No 12
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.05 E-value=3.5e-09 Score=99.46 Aligned_cols=62 Identities=19% Similarity=0.192 Sum_probs=44.6
Q ss_pred ccCceEEEEEEEEe--CeEEEEEeeccCCCCCCccHhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccceEEEeccc
Q 041371 190 LGNKGSISISMTLH--NTTFCFVGTHLASGEKEGDEIRRNSDVAQILKRTRFSHSYIDPAQPLPPETILEHDVIFWLGDL 267 (437)
Q Consensus 190 ~GNKGaV~ir~~i~--~ts~~FVn~HLaAg~~~~~~~rRn~d~~~I~~~~~f~~~~~~~~~~~~~~~i~~~D~vfw~GDL 267 (437)
...++++.+.+... +..+.++|+||.+.. ...|..++..|++.+. ..+.. +.+|++|||
T Consensus 107 ~~~r~~~~~~~~~~~~g~~~~v~~~Hl~~~~----~~~r~~q~~~l~~~i~--------------~~~~~-~pvil~GDf 167 (257)
T 3l1w_A 107 GCPRIALWGLFKETTQNTPFLVINVHLDHIS----AHARLAGMTVILEELH--------------DKIAQ-YPTLLMGDF 167 (257)
T ss_dssp SSCCEEEEEEEEETTCSSCEEEEEEECCSSC----HHHHHHHHHHHHHHTH--------------HHHHH-SCEEEEEEC
T ss_pred cccceeEEEEEEEcCCCCEEEEEEeCCCCCC----HHHHHHHHHHHHHHHH--------------HHcCC-CCEEEEeeC
Confidence 34678888888874 678999999998863 3467788888877542 00112 279999999
Q ss_pred ccc
Q 041371 268 NYR 270 (437)
Q Consensus 268 NyR 270 (437)
|-.
T Consensus 168 N~~ 170 (257)
T 3l1w_A 168 NAE 170 (257)
T ss_dssp CCC
T ss_pred CCC
Confidence 963
No 13
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=99.01 E-value=2.1e-10 Score=107.72 Aligned_cols=68 Identities=9% Similarity=0.114 Sum_probs=45.6
Q ss_pred cCceEEEEEEEEeCeEEEEEeeccCCCCCCc---cHhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccceEEEeccc
Q 041371 191 GNKGSISISMTLHNTTFCFVGTHLASGEKEG---DEIRRNSDVAQILKRTRFSHSYIDPAQPLPPETILEHDVIFWLGDL 267 (437)
Q Consensus 191 GNKGaV~ir~~i~~ts~~FVn~HLaAg~~~~---~~~rRn~d~~~I~~~~~f~~~~~~~~~~~~~~~i~~~D~vfw~GDL 267 (437)
..++.+.+++.+.+..|+++|+||.++.... ....|...+..|.+.+.-. ......+|++|||
T Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~r~~~~~~l~~~~~~~--------------~~~~~~~Il~GDF 152 (268)
T 1ako_A 87 AQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETE--------------LKRDNPVLIMGDM 152 (268)
T ss_dssp HHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHHHHHHHHHHHHHHHH--------------CCTTSCEEEEEEC
T ss_pred cCCCEEEEEEEcCCCeEEEEEEEecCCCCcccchhHHHHHHHHHHHHHHHHHh--------------hhCCCCEEEEeEC
Confidence 4578899999998889999999999876321 1224556665655443200 0123569999999
Q ss_pred ccccc
Q 041371 268 NYRLA 272 (437)
Q Consensus 268 NyRI~ 272 (437)
|-..+
T Consensus 153 N~~~~ 157 (268)
T 1ako_A 153 NISPT 157 (268)
T ss_dssp CCCCS
T ss_pred CCCCc
Confidence 96544
No 14
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=98.92 E-value=5.8e-09 Score=101.18 Aligned_cols=63 Identities=11% Similarity=0.007 Sum_probs=42.7
Q ss_pred cCceEEEEEEE--EeCeEEEEEeeccCCCCCCccHhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccceEEEecccc
Q 041371 191 GNKGSISISMT--LHNTTFCFVGTHLASGEKEGDEIRRNSDVAQILKRTRFSHSYIDPAQPLPPETILEHDVIFWLGDLN 268 (437)
Q Consensus 191 GNKGaV~ir~~--i~~ts~~FVn~HLaAg~~~~~~~rRn~d~~~I~~~~~f~~~~~~~~~~~~~~~i~~~D~vfw~GDLN 268 (437)
-+++++.+.|. ..+..|+++|+||.+.. ...|..+...|++.+.=... . ....+|++||||
T Consensus 118 ~~R~~~~~~~~~~~~g~~~~v~~~Hl~~~~----~~~R~~q~~~l~~~i~~~~~----------~---~~~pvIl~GDfN 180 (298)
T 3mpr_A 118 LPRICSWGHFKCKDTGFEFLFFNLHMDHIG----KKARVESAFLVQEKMKELGR----------G---KNLPAILTGDFN 180 (298)
T ss_dssp SCCEEEEEEEEETTTCCEEEEEEEECCSSC----HHHHHHHHHHHHHHHHHTTT----------T---SCCCEEEEEECS
T ss_pred cCceeEEEEEEEcCCCCEEEEEEecCCCCC----HHHHHHHHHHHHHHHHHHhc----------C---CCCcEEEEEeCC
Confidence 36778888888 46789999999998642 34677777777665421000 0 124689999999
Q ss_pred cc
Q 041371 269 YR 270 (437)
Q Consensus 269 yR 270 (437)
-.
T Consensus 181 ~~ 182 (298)
T 3mpr_A 181 VD 182 (298)
T ss_dssp SC
T ss_pred CC
Confidence 54
No 15
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=98.54 E-value=3.2e-08 Score=92.06 Aligned_cols=53 Identities=19% Similarity=0.166 Sum_probs=30.9
Q ss_pred EEEEEeeccCCCCCCcc--HhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccceEEEecccccccc
Q 041371 206 TFCFVGTHLASGEKEGD--EIRRNSDVAQILKRTRFSHSYIDPAQPLPPETILEHDVIFWLGDLNYRLA 272 (437)
Q Consensus 206 s~~FVn~HLaAg~~~~~--~~rRn~d~~~I~~~~~f~~~~~~~~~~~~~~~i~~~D~vfw~GDLNyRI~ 272 (437)
.+.++|+|++++...+. ...|.+.+..+.+.+.- .+.....+|++||||-...
T Consensus 98 ~~~v~~~h~~~~~~~~~~~~~~r~~~~~~l~~~~~~--------------~~~~~~~~il~GDFN~~~~ 152 (256)
T 2jc4_A 98 GVRVINVYCVNGEALDSPKFKYKEQWFAALTEFVRD--------------EMTRHGKLVLLGDFNIAPA 152 (256)
T ss_dssp TEEEEEEECCCCCSTTSHHHHHHHHHHHHHHHHHHH--------------HHTTCSSEEEEEECCCCCS
T ss_pred CEEEEEEEecCCCCCCcHhHHHHHHHHHHHHHHHHH--------------HhcCCCCEEEEeECCCCCc
Confidence 79999999998764221 12344444444432210 0012356999999997654
No 16
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=98.49 E-value=7.7e-07 Score=85.30 Aligned_cols=71 Identities=23% Similarity=0.348 Sum_probs=49.8
Q ss_pred ccCceEEEEEEEEeCeEEEEEeeccCCCCCC----ccHhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccceEEEec
Q 041371 190 LGNKGSISISMTLHNTTFCFVGTHLASGEKE----GDEIRRNSDVAQILKRTRFSHSYIDPAQPLPPETILEHDVIFWLG 265 (437)
Q Consensus 190 ~GNKGaV~ir~~i~~ts~~FVn~HLaAg~~~----~~~~rRn~d~~~I~~~~~f~~~~~~~~~~~~~~~i~~~D~vfw~G 265 (437)
..++|++.+.+.+.+..+.++|+||.+.... .....|..++..|.+.+.=. .+.....+|++|
T Consensus 128 ~~~r~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~-------------~~~~~~pvIl~G 194 (301)
T 1zwx_A 128 LSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKK-------------NIPKDEIIFIGG 194 (301)
T ss_dssp GBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHH-------------TCCTTSEEEEEE
T ss_pred ccCCCeEEEEEEECCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHh-------------CCCCCCeEEEEe
Confidence 3579999999999999999999999987431 12345777777776644200 011235799999
Q ss_pred cccccccC
Q 041371 266 DLNYRLAN 273 (437)
Q Consensus 266 DLNyRI~~ 273 (437)
|||-.-..
T Consensus 195 DfN~~~~~ 202 (301)
T 1zwx_A 195 DLNVNYGT 202 (301)
T ss_dssp ECCCCTTS
T ss_pred eCCCCCCc
Confidence 99976543
No 17
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=98.45 E-value=5.5e-07 Score=82.52 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=35.8
Q ss_pred EEEEEEEEeCeEEEEEeeccCCCCCCccHhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccceEEEeccccccc
Q 041371 195 SISISMTLHNTTFCFVGTHLASGEKEGDEIRRNSDVAQILKRTRFSHSYIDPAQPLPPETILEHDVIFWLGDLNYRL 271 (437)
Q Consensus 195 aV~ir~~i~~ts~~FVn~HLaAg~~~~~~~rRn~d~~~I~~~~~f~~~~~~~~~~~~~~~i~~~D~vfw~GDLNyRI 271 (437)
.+.+.+.+.+..+.++|+|++++.. .+ -+.++++.+. .. ....+|++||||-..
T Consensus 97 ~i~~~~~~~~~~~~v~~~y~p~~~~----~~---~~~~l~~~l~--~~--------------~~~~~Il~GDFN~~~ 150 (238)
T 1vyb_A 97 YIMVKGSIQQEELTILNIYAPNTGA----PR---FIKQVLSDLQ--RD--------------LDSHTLIMGDFNTPL 150 (238)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSSH----HH---HHHHHHHHTT--TT--------------CCTTEEEEEECSSCS
T ss_pred EEEEEEEeCCCcEEEEEEecCCCCc----HH---HHHHHHHHHH--hc--------------cCCCEEEEccCCCCC
Confidence 5667777888999999999988642 12 1334555432 00 124689999999743
No 18
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=98.38 E-value=9.1e-07 Score=86.96 Aligned_cols=70 Identities=21% Similarity=0.297 Sum_probs=50.9
Q ss_pred ccCceEEEEEEEEeCeEEEEEeeccCCCCCC----ccHhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccceEEEec
Q 041371 190 LGNKGSISISMTLHNTTFCFVGTHLASGEKE----GDEIRRNSDVAQILKRTRFSHSYIDPAQPLPPETILEHDVIFWLG 265 (437)
Q Consensus 190 ~GNKGaV~ir~~i~~ts~~FVn~HLaAg~~~----~~~~rRn~d~~~I~~~~~f~~~~~~~~~~~~~~~i~~~D~vfw~G 265 (437)
..+||.+.+++.+.+..|.++|+||.+.... .....|..+...|.+.+.-. .+.....+|++|
T Consensus 147 ~~~r~~~~~~i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~-------------~~~~~~pvIl~G 213 (317)
T 3i41_A 147 DSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKK-------------NIPKDETVYIGG 213 (317)
T ss_dssp GBCCEEEEEEEEETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHH-------------TCCTTSCEEEEE
T ss_pred ccCcceEEEEEEECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHh-------------ccCCCCeEEEEe
Confidence 5789999999999999999999999986521 13457888887777654210 011235689999
Q ss_pred ccccccc
Q 041371 266 DLNYRLA 272 (437)
Q Consensus 266 DLNyRI~ 272 (437)
|||-.-.
T Consensus 214 DfN~~~~ 220 (317)
T 3i41_A 214 DLNVNKG 220 (317)
T ss_dssp ECCCCTT
T ss_pred ECCCCCC
Confidence 9997763
No 19
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=98.35 E-value=9.1e-08 Score=89.15 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=22.9
Q ss_pred EEEEeeCCCCCCCCCCCcccccCCCCCCcEEEEeeEEe
Q 041371 2 FVGTWNVGGKSPHEDLNLRDWLKSTAPADIYVLGFQEI 39 (437)
Q Consensus 2 fvgTWNV~g~~P~~~~~l~~WL~~~~~~DIyviGfQEi 39 (437)
=|.||||+|........|.++|.. ..||| |+|||+
T Consensus 3 ~v~t~Ni~~~~~~~~~~i~~~i~~-~~~DI--i~LQE~ 37 (259)
T 2jc5_A 3 KIISANVNGIRSAYKKGFYEYIAA-SGADI--VCVQEL 37 (259)
T ss_dssp EEEEEECSSHHHHHHTTHHHHHHH-TTCSE--EEEECC
T ss_pred EEEEEeeccHHHHHHhHHHHHHHh-cCCCE--EEEEEe
Confidence 478999998532211136677764 36886 678997
No 20
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=98.25 E-value=6.4e-06 Score=78.90 Aligned_cols=69 Identities=20% Similarity=0.314 Sum_probs=47.7
Q ss_pred ccCceEEEEEEEEeCeEEEEEeeccCCCCCC----ccHhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccceEEEec
Q 041371 190 LGNKGSISISMTLHNTTFCFVGTHLASGEKE----GDEIRRNSDVAQILKRTRFSHSYIDPAQPLPPETILEHDVIFWLG 265 (437)
Q Consensus 190 ~GNKGaV~ir~~i~~ts~~FVn~HLaAg~~~----~~~~rRn~d~~~I~~~~~f~~~~~~~~~~~~~~~i~~~D~vfw~G 265 (437)
...+|++.+.+.+.+..+.++|+||.+.... .....|..++..|.+.+.-.. +.....+|++|
T Consensus 128 ~~~r~~~~~~i~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~-------------~~~~~pvil~G 194 (306)
T 2ddr_A 128 LSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNKN-------------IPNNEYVLIGG 194 (306)
T ss_dssp CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHHT-------------CCTTSCEEEEE
T ss_pred hcCCCeEEEEEEeCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhc-------------CCCCCEEEEEe
Confidence 3578999999999999999999999987421 124467777777765432000 01224689999
Q ss_pred cccccc
Q 041371 266 DLNYRL 271 (437)
Q Consensus 266 DLNyRI 271 (437)
|||-.-
T Consensus 195 DfN~~~ 200 (306)
T 2ddr_A 195 DMNVNK 200 (306)
T ss_dssp ECCCCC
T ss_pred eCCCCc
Confidence 999866
No 21
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=98.24 E-value=1.9e-06 Score=81.95 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=30.9
Q ss_pred eEEEEEeeccCCCCCCc-cHhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccceEEEeccccccc
Q 041371 205 TTFCFVGTHLASGEKEG-DEIRRNSDVAQILKRTRFSHSYIDPAQPLPPETILEHDVIFWLGDLNYRL 271 (437)
Q Consensus 205 ts~~FVn~HLaAg~~~~-~~~rRn~d~~~I~~~~~f~~~~~~~~~~~~~~~i~~~D~vfw~GDLNyRI 271 (437)
..+.++|+|+++..... ...+|.+.+..|.+.+. .+.....+|++||||-..
T Consensus 130 ~~~~v~~~h~p~~~~~~~~~~~r~~~~~~l~~~l~---------------~~~~~~p~Il~GDFN~~~ 182 (285)
T 2o3h_A 130 DSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLK---------------GLASRKPLVLCGDLNVAH 182 (285)
T ss_dssp SSCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHH---------------HHHTTSCEEEEEECSCCC
T ss_pred CCEEEEEEEcCCCCCcchhHHHHHHHHHHHHHHHH---------------hhccCCCEEEEEECCCCC
Confidence 57999999998765321 12335555555544321 011125699999999754
No 22
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=98.20 E-value=2.5e-06 Score=80.58 Aligned_cols=35 Identities=31% Similarity=0.548 Sum_probs=22.9
Q ss_pred EEEEeeCCCCCCCCCCCcccccCCCCCCcEEEEeeEEe
Q 041371 2 FVGTWNVGGKSPHEDLNLRDWLKSTAPADIYVLGFQEI 39 (437)
Q Consensus 2 fvgTWNV~g~~P~~~~~l~~WL~~~~~~DIyviGfQEi 39 (437)
-|.||||+|-.......+.+||... .||| |+|||+
T Consensus 5 ~i~s~Nv~g~~~~~~~~l~~~i~~~-~~DI--v~LQEt 39 (265)
T 3g91_A 5 KIISWNVNGLRAVHRKGFLKWFMEE-KPDI--LCLQEI 39 (265)
T ss_dssp EEEEEECSCHHHHHHHTHHHHHHHH-CCSE--EEEECC
T ss_pred EEEEEEcCCchhhhhhhHHHHHHhc-CCCE--EEEEec
Confidence 4789999985322111467787643 6786 567996
No 23
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=98.19 E-value=1.6e-06 Score=85.00 Aligned_cols=52 Identities=15% Similarity=0.112 Sum_probs=31.3
Q ss_pred eEEEEEeeccCCCCCCc-cHhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccceEEEeccccccc
Q 041371 205 TTFCFVGTHLASGEKEG-DEIRRNSDVAQILKRTRFSHSYIDPAQPLPPETILEHDVIFWLGDLNYRL 271 (437)
Q Consensus 205 ts~~FVn~HLaAg~~~~-~~~rRn~d~~~I~~~~~f~~~~~~~~~~~~~~~i~~~D~vfw~GDLNyRI 271 (437)
..|.++|+|+++..... ....|.+.+..|.+.+. .+.....+|++||||-..
T Consensus 163 ~~~~v~~vh~p~~~~~~~~~~~r~~~~~~l~~~l~---------------~~~~~~pvIl~GDFN~~~ 215 (318)
T 1hd7_A 163 DSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLK---------------GLASRKPLVLCGDLNVAH 215 (318)
T ss_dssp SSCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHH---------------HHHHHSCEEEEEECSCCC
T ss_pred CCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHH---------------hcccCCCEEEEeeCCCCC
Confidence 57999999998765321 12335555555544321 111225699999999654
No 24
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=97.93 E-value=3.2e-05 Score=73.35 Aligned_cols=56 Identities=13% Similarity=0.046 Sum_probs=35.4
Q ss_pred CceEEEEEEEEeCeEEEEEeeccCCCCCCccHhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccceEEEeccccccc
Q 041371 192 NKGSISISMTLHNTTFCFVGTHLASGEKEGDEIRRNSDVAQILKRTRFSHSYIDPAQPLPPETILEHDVIFWLGDLNYRL 271 (437)
Q Consensus 192 NKGaV~ir~~i~~ts~~FVn~HLaAg~~~~~~~rRn~d~~~I~~~~~f~~~~~~~~~~~~~~~i~~~D~vfw~GDLNyRI 271 (437)
..|++.|.+.+ ..+.++|+|++.+... ..+.+.+.++...+. ...++++||||=--
T Consensus 77 ~~~~~~i~i~~--~~i~i~svY~P~~~~~---~~~~~~l~~l~~~~~-------------------~~~~Ii~GDfN~~~ 132 (240)
T 2ei9_A 77 STHITVVHIGG--WDLYMVSAYFQYSDPI---DPYLHRLGNILDRLR-------------------GARVVICADTNAHS 132 (240)
T ss_dssp CSSEEEEEETT--TTEEEEEEECCTTSCS---HHHHHHHHHHHHHTT-------------------TSCEEEEEECCCCC
T ss_pred CCCEEEEEEee--ccEEEEEEEcCCCCch---hHHHHHHHHHHHhcC-------------------CCcEEEEEeccccc
Confidence 46777766654 5688999999998642 223334444443210 13589999999543
No 25
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=97.19 E-value=0.0022 Score=59.50 Aligned_cols=59 Identities=7% Similarity=0.111 Sum_probs=41.6
Q ss_pred cCceEEEEEEEEeCeEEEEEeeccCCCCCCccHhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccceEEEecccccc
Q 041371 191 GNKGSISISMTLHNTTFCFVGTHLASGEKEGDEIRRNSDVAQILKRTRFSHSYIDPAQPLPPETILEHDVIFWLGDLNYR 270 (437)
Q Consensus 191 GNKGaV~ir~~i~~ts~~FVn~HLaAg~~~~~~~rRn~d~~~I~~~~~f~~~~~~~~~~~~~~~i~~~D~vfw~GDLNyR 270 (437)
-..|.+.+.+...+..+.++|+|++.+.. ...+.+.+.++++.+ ....+|++||||-.
T Consensus 101 ~~~~~~~~~i~~~~~~~~v~~vy~p~~~~---~~~~~~~l~~~~~~~-------------------~~~~~Ii~GDfN~~ 158 (245)
T 1wdu_A 101 TTNNIVVVGIRTRAWEITLVSYYFEPDKP---IESYLEQIKRVERKM-------------------GPKRLIFGGDANAK 158 (245)
T ss_dssp CCSSEEEEEEECSSCEEEEEEEECCTTSC---SHHHHHHHHHHHHTT-------------------CSSSEEEEEECCCC
T ss_pred ccCCEEEEEEEcCCCcEEEEEEEeCCCCC---HHHHHHHHHHHHHHh-------------------CCCcEEEEeccccC
Confidence 35677888888888899999999998753 223445666665532 11458999999954
Q ss_pred c
Q 041371 271 L 271 (437)
Q Consensus 271 I 271 (437)
-
T Consensus 159 ~ 159 (245)
T 1wdu_A 159 S 159 (245)
T ss_dssp C
T ss_pred c
Confidence 3
No 26
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=97.10 E-value=0.0016 Score=63.26 Aligned_cols=38 Identities=39% Similarity=0.581 Sum_probs=27.3
Q ss_pred EEEeeCCCCCCCCC----CCcccccCCCCCCcEEEEeeEEeeec
Q 041371 3 VGTWNVGGKSPHED----LNLRDWLKSTAPADIYVLGFQEIVPL 42 (437)
Q Consensus 3 vgTWNV~g~~P~~~----~~l~~WL~~~~~~DIyviGfQEiV~L 42 (437)
|+|||+-|..+..+ ..+..||.....|||+ .+||+--+
T Consensus 7 v~TwNi~g~~~~~~~k~~~~i~~~i~~~~~~DIl--aLQEa~~~ 48 (261)
T 1sr4_B 7 VATWNLQGSSAVNESKWNINVRQLLSGEQGADIL--MVQEAGSL 48 (261)
T ss_dssp EEEEECCCCSSSSHHHHHHHHHHHHCSTTCCSEE--EEESCCSC
T ss_pred EEEEEcCCCCCCChhhhhhHHHHHHcCCCCCCEE--EEecCCCC
Confidence 79999998654331 2367888887789985 57998544
No 27
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=96.67 E-value=0.0056 Score=57.56 Aligned_cols=61 Identities=13% Similarity=0.270 Sum_probs=36.2
Q ss_pred ceEEEEEEEEe---CeEEEEEeeccCCCCCCccHhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccceEEEeccccc
Q 041371 193 KGSISISMTLH---NTTFCFVGTHLASGEKEGDEIRRNSDVAQILKRTRFSHSYIDPAQPLPPETILEHDVIFWLGDLNY 269 (437)
Q Consensus 193 KGaV~ir~~i~---~ts~~FVn~HLaAg~~~~~~~rRn~d~~~I~~~~~f~~~~~~~~~~~~~~~i~~~D~vfw~GDLNy 269 (437)
.+...+.|... +..|.++|+||.+... .++.+.+.++++.+. .......+|++||||-
T Consensus 111 R~p~~~~~~~~~~~g~~~~vi~~Hl~~~~~----~~q~~~l~~~~~~~~---------------~~~~~~~vil~GDfN~ 171 (260)
T 2a40_B 111 REPAVVKFSSHSTKVKEFAIVALHSAPSDA----VAEINSLYDVYLDVQ---------------QKWHLNDVMLMGDFNA 171 (260)
T ss_dssp SCCEEEEEECTTSSSSEEEEEECCCCGGGH----HHHHHHHHHHHHHHH---------------HHHCCCCEEEEEECCC
T ss_pred eCCEEEEEEeCCCCCceEEEEEecCCCCCc----HHHHHHHHHHHHHHH---------------HhCCCCCEEEEecCCC
Confidence 45566677765 5789999999997532 122233334433220 0011246899999997
Q ss_pred ccc
Q 041371 270 RLA 272 (437)
Q Consensus 270 RI~ 272 (437)
.-.
T Consensus 172 ~~~ 174 (260)
T 2a40_B 172 DCS 174 (260)
T ss_dssp STT
T ss_pred CCc
Confidence 644
No 28
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.66 E-value=0.00045 Score=75.59 Aligned_cols=74 Identities=16% Similarity=0.105 Sum_probs=0.0
Q ss_pred eCeEEEEEeeccCCCCCCccHhHHHHHHHHHHHhcC-CCCCCCCCCCCCCCCcccccceEEEeccccccccCCchhHHHH
Q 041371 203 HNTTFCFVGTHLASGEKEGDEIRRNSDVAQILKRTR-FSHSYIDPAQPLPPETILEHDVIFWLGDLNYRLANGYGDTHEQ 281 (437)
Q Consensus 203 ~~ts~~FVn~HLaAg~~~~~~~rRn~d~~~I~~~~~-f~~~~~~~~~~~~~~~i~~~D~vfw~GDLNyRI~~~~~~v~~l 281 (437)
.+..|+++|+||.++.... ..|......+++.+. +..... ......-.....||++||||-.-+ +.+.+.
T Consensus 545 ~g~~l~V~ntHL~~~p~~~--~~R~~Qa~~l~~~l~~~~~~~~----~~~~~~~~~~~pvIl~GDFNs~P~---s~~~~~ 615 (727)
T 4b8c_D 545 SGDTIWAVTTHLHWDPKFN--DVKTFQVGVLLDHLETLLKEET----SHNFRQDIKKFPVLICGDFNSYIN---SAVYEL 615 (727)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEEEeccccCCCCC--chHHHHHHHHHHHHHHHHHHhc----ccccccccCCCceEEecccCCCCC---CcceEe
Confidence 3678999999999864322 235444444444332 000000 000000012346999999995433 344454
Q ss_pred HHhc
Q 041371 282 LKRN 285 (437)
Q Consensus 282 i~~~ 285 (437)
+..+
T Consensus 616 l~~~ 619 (727)
T 4b8c_D 616 INTG 619 (727)
T ss_dssp ----
T ss_pred eecC
Confidence 4443
No 29
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=96.56 E-value=0.0065 Score=63.42 Aligned_cols=35 Identities=14% Similarity=0.044 Sum_probs=22.2
Q ss_pred ccceeeecCCce-EEe-eecccCccCCCccccceEEE
Q 041371 346 CDRILWKGEGLK-QLC-YVRGESRFSDHRPVYSFFSV 380 (437)
Q Consensus 346 cDRIL~~~~~~~-~l~-Y~~~e~~~SDHrPV~a~F~v 380 (437)
-|+||....-.. ... ....+...|||.||.+.|.+
T Consensus 430 IDyIlvS~~l~~~v~~~~I~~~~~~SDH~PV~~~l~~ 466 (467)
T 2j63_A 430 LDYFVVSSRLASYVVDCFPMPTVMGSDHCPFQMWMRH 466 (467)
T ss_dssp CEEEEEEGGGGGGEEEEEECTTCCSSSBCCEEEEEEC
T ss_pred eEEEEEcHHHHcceeEEEECCCCCCCCcccEEEEEEc
Confidence 599998754221 111 22234578999999998764
No 30
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=95.86 E-value=0.04 Score=53.31 Aligned_cols=61 Identities=18% Similarity=0.236 Sum_probs=38.8
Q ss_pred cCceEEEEEEEEeCeEEEEEeeccCCCCCCccHhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccceEEEecccccc
Q 041371 191 GNKGSISISMTLHNTTFCFVGTHLASGEKEGDEIRRNSDVAQILKRTRFSHSYIDPAQPLPPETILEHDVIFWLGDLNYR 270 (437)
Q Consensus 191 GNKGaV~ir~~i~~ts~~FVn~HLaAg~~~~~~~rRn~d~~~I~~~~~f~~~~~~~~~~~~~~~i~~~D~vfw~GDLNyR 270 (437)
+....++|++ ..+.|.+.|+.|+... .|.+.+..|.+-++ .. +..+...--.+++||||=.
T Consensus 129 ~~Rp~lgiri----~~~~ff~tHa~a~~g~----da~a~v~~I~~~~~--~~---------~~~~~~~~pwii~GDFNr~ 189 (262)
T 2f1n_A 129 GGRPLLGIRI----GNDAFFTAHAIAMRNN----DAPALVEEVYNFFR--DS---------RDPVHQALNWMILGDFNRE 189 (262)
T ss_dssp TCCCEEEEEE----TTEEEEEEECCSSSSC----SHHHHHHHHHHHHH--TC---------SSHHHHTCEEEEEEECSSC
T ss_pred CCCceEEEEE----CCEEEEEEEecCCCCc----cHHHHHHHHHHHHh--cC---------cccccCCCcEEEEecCCCC
Confidence 3778888887 2488999999998432 26677777776432 11 0000111368899999954
No 31
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=95.63 E-value=0.043 Score=56.09 Aligned_cols=73 Identities=8% Similarity=-0.033 Sum_probs=40.7
Q ss_pred eEEEEEeeccCCCCCCccHhHHHHHHHHHHHhcC-CCCCCCCCCCCCCC-CcccccceEEEeccccccccCCchhHHHHH
Q 041371 205 TTFCFVGTHLASGEKEGDEIRRNSDVAQILKRTR-FSHSYIDPAQPLPP-ETILEHDVIFWLGDLNYRLANGYGDTHEQL 282 (437)
Q Consensus 205 ts~~FVn~HLaAg~~~~~~~rRn~d~~~I~~~~~-f~~~~~~~~~~~~~-~~i~~~D~vfw~GDLNyRI~~~~~~v~~li 282 (437)
..|+++|+||..+... ..-|..+...|++.+. |..... ....+ ..-...-.+|++||||-- +...+.++|
T Consensus 195 ~~l~V~nTHL~~~p~~--~~vRl~Q~~~Ll~~l~~~~~~~~---~~~~~~~~~~~~~PvIl~GDFNs~---P~s~vy~~L 266 (398)
T 3ngq_A 195 QLLIVANAHMHWDPEY--SDVKLIQTMMFVSEVKNILEKAS---SRPGSPTADPNSIPLVLCADLNSL---PDSGVVEYL 266 (398)
T ss_dssp CEEEEEEEECCCCTTC--HHHHHHHHHHHHHHHHHHHCC----------------CCCEEEEEECSCC---TTSHHHHHH
T ss_pred cEEEEEEeCcCCCCCC--HHHHHHHHHHHHHHHHHHHHHhh---cccccccccCCCCceEEEeeCCCC---CCCHHHHHH
Confidence 4699999999997643 2346667766666542 111000 00000 000012368999999954 445677777
Q ss_pred Hhc
Q 041371 283 KRN 285 (437)
Q Consensus 283 ~~~ 285 (437)
.+|
T Consensus 267 ~~G 269 (398)
T 3ngq_A 267 SNG 269 (398)
T ss_dssp HHT
T ss_pred hcC
Confidence 765
No 32
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=95.57 E-value=0.02 Score=52.68 Aligned_cols=34 Identities=32% Similarity=0.448 Sum_probs=21.6
Q ss_pred EEEEeeCCCCCCCCCCCcccccCCCCCCcEEEEeeEEe
Q 041371 2 FVGTWNVGGKSPHEDLNLRDWLKSTAPADIYVLGFQEI 39 (437)
Q Consensus 2 fvgTWNV~g~~P~~~~~l~~WL~~~~~~DIyviGfQEi 39 (437)
=|.||||+|...... .+.++|.. ..||| |+|||+
T Consensus 3 rv~t~Nv~g~~~~~~-~i~~~i~~-~~~Di--i~lQE~ 36 (257)
T 2voa_A 3 KIATFNVNSIRSRLH-IVIPWLKE-NKPDI--LCMQET 36 (257)
T ss_dssp EEEEEECSCGGGTHH-HHHHHHHH-HCCSE--EEEECC
T ss_pred EEEEEecCChHHHHH-HHHHHHhh-cCCCE--EEEEEe
Confidence 378999998643211 24555543 35786 678997
No 33
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=69.69 E-value=0.55 Score=42.88 Aligned_cols=35 Identities=23% Similarity=0.120 Sum_probs=20.9
Q ss_pred cccceeeecCC---ceEEeeecc---cCccCCCccccceEE
Q 041371 345 WCDRILWKGEG---LKQLCYVRG---ESRFSDHRPVYSFFS 379 (437)
Q Consensus 345 WcDRIL~~~~~---~~~l~Y~~~---e~~~SDHrPV~a~F~ 379 (437)
=-|+||....- +........ ....|||.||.+.|.
T Consensus 216 rID~i~~s~~~~~~~~~~~v~~~~~~~~~~SDH~pv~~~l~ 256 (257)
T 2voa_A 216 RGDAILATPPLAERCVDCYADIKPRLAEKPSDHLPLVAVFD 256 (257)
T ss_dssp CCEEEEECHHHHTTEEEEEECCHHHHSSSCCSBCCEEEEEC
T ss_pred EEEEEEECHHHHhhhheeEeehhhccCCCCCCccCEEEEEe
Confidence 36999987531 221111111 136899999998875
No 34
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=61.30 E-value=0.64 Score=48.33 Aligned_cols=35 Identities=31% Similarity=0.465 Sum_probs=22.3
Q ss_pred EEEEeeCCCCCCCC--C-CCcccccCCCCCCcEEEEeeEEe
Q 041371 2 FVGTWNVGGKSPHE--D-LNLRDWLKSTAPADIYVLGFQEI 39 (437)
Q Consensus 2 fvgTWNV~g~~P~~--~-~~l~~WL~~~~~~DIyviGfQEi 39 (437)
=|.||||+|-.... . ..|.+||... .||| |+|||+
T Consensus 151 KI~TwNVnGl~~~~kr~~~~i~~~I~~~-~pDI--VcLQEt 188 (467)
T 2j63_A 151 KFITWNVAGLRGLLKKNASALRAFMEAE-KPDV--LCLQET 188 (467)
T ss_dssp EEEEEECSCHHHHHHHCTTHHHHHHHHH-CCSE--EEEECC
T ss_pred EEEEEEcCCCcccccccHHHHHHHHHHc-CCCE--EEEEec
Confidence 37899999842111 0 1366777643 5785 678997
No 35
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=53.64 E-value=9 Score=35.61 Aligned_cols=15 Identities=40% Similarity=0.640 Sum_probs=13.0
Q ss_pred CccCCCccccceEEE
Q 041371 366 SRFSDHRPVYSFFSV 380 (437)
Q Consensus 366 ~~~SDHrPV~a~F~v 380 (437)
...|||.||.+.|.+
T Consensus 291 ~~~SDH~pv~a~l~~ 305 (306)
T 2ddr_A 291 NDYSDHYPVEATISM 305 (306)
T ss_dssp CCSCSSCCEEEEEEC
T ss_pred cCCCCCcceeEEEEe
Confidence 468999999998875
No 36
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=35.53 E-value=16 Score=34.97 Aligned_cols=60 Identities=18% Similarity=0.216 Sum_probs=36.5
Q ss_pred cCceEEEEEEEEeCeEEEEEeeccCCCCCCccHhHHHHHHHHHHHhcCCCCCCCCCCCCCCCCcccccceEEEecccc
Q 041371 191 GNKGSISISMTLHNTTFCFVGTHLASGEKEGDEIRRNSDVAQILKRTRFSHSYIDPAQPLPPETILEHDVIFWLGDLN 268 (437)
Q Consensus 191 GNKGaV~ir~~i~~ts~~FVn~HLaAg~~~~~~~rRn~d~~~I~~~~~f~~~~~~~~~~~~~~~i~~~D~vfw~GDLN 268 (437)
-..|++.|+ +.+ +.|++.||.+.... .|......|.+.++ ... ..+ . ..+.-.+++||||
T Consensus 120 ~~R~~l~i~--i~g--~~f~s~Hl~~~~~~----ea~~~v~~I~~~~~--~~~------~~~-~-~~~~~~ii~GDFN 179 (261)
T 1sr4_B 120 QSRPAVGIR--IGT--DVFFTVHALATGGS----DAVSLIRNIFTTFN--SSS------SPP-E-RRVYSWMVVGDFN 179 (261)
T ss_dssp CCCCEEEEE--ETT--EEEEEEECCTTTTT----THHHHHHHHHHHHH--C---------CG-G-GGGCEEEEEEECS
T ss_pred cCcceEEEE--ECC--eEEEEeCCCCCCCc----hHHHHHHHHHHHHH--hcc------cCC-c-ccCCcEEEEeeCC
Confidence 367888874 666 99999999998521 24445555555321 000 000 0 1235789999999
No 37
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=34.46 E-value=7.9 Score=35.08 Aligned_cols=53 Identities=26% Similarity=0.401 Sum_probs=34.6
Q ss_pred eCCCCCCCCCCCcccccCCCCCCcEEEEeeEEee-ecCCCccccccCCchhHHHHHHHHHHhc
Q 041371 7 NVGGKSPHEDLNLRDWLKSTAPADIYVLGFQEIV-PLNAGNVLGAEDNGPAAKWLSLIRQALN 68 (437)
Q Consensus 7 NV~g~~P~~~~~l~~WL~~~~~~DIyviGfQEiV-~Lnagnvl~~ed~~~~~~W~~~i~~~Ln 68 (437)
||||+.--...+|.+.|.. +||+++. .++.|||+-..+. +...=...|.++|.
T Consensus 15 NVGG~nkv~MadLr~~l~~--------lGf~~V~TyI~SGNvvF~s~~-~~~~l~~~ie~~l~ 68 (183)
T 2hiy_A 15 NVGGKNKVVMAELRQELTN--------LGLEKVESYINSGNIFFTSID-SKAQLVEKLETFFA 68 (183)
T ss_dssp SCC-CCCCCHHHHHHHHHH--------HTCEEEEEETTTTEEEEEECS-CHHHHHHHHHHHHH
T ss_pred ecCCCCcccHHHHHHHHHH--------cCCccceEEEecCCEEEecCC-CHHHHHHHHHHHHH
Confidence 8998532223356666654 6999976 8999999875444 44555666666664
No 38
>3pt1_A UPF0364 protein YMR027W; alpha/beta fold, carbohydrate phosphatase, F6P binding, HYDR; HET: F6P; 1.77A {Saccharomyces cerevisiae}
Probab=33.57 E-value=8.2 Score=40.21 Aligned_cols=17 Identities=35% Similarity=0.810 Sum_probs=14.6
Q ss_pred ccccceEEEeccccccc
Q 041371 255 ILEHDVIFWLGDLNYRL 271 (437)
Q Consensus 255 i~~~D~vfw~GDLNyRI 271 (437)
+.+.+.||+=||||||=
T Consensus 374 L~~S~LVIFKGDLNYRK 390 (471)
T 3pt1_A 374 LQKSNLVIFKGDLNYRK 390 (471)
T ss_dssp HTTCSEEEEEHHHHHHH
T ss_pred HhhCcEEEEecchhhhh
Confidence 45689999999999984
No 39
>2yka_B ORF57 protein, 52 kDa immediate-early phosphoprotein; RNA binding protein-transcription complex, RNA binding prote; NMR {Saimiriine herpesvirus 2}
Probab=37.12 E-value=10 Score=23.24 Aligned_cols=9 Identities=33% Similarity=0.973 Sum_probs=7.3
Q ss_pred CCcccccee
Q 041371 342 TPAWCDRIL 350 (437)
Q Consensus 342 ~PSWcDRIL 350 (437)
-|+|.|||=
T Consensus 8 r~nWs~RV~ 16 (26)
T 2yka_B 8 KTSWADRVR 16 (26)
Confidence 489999984
No 40
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=25.53 E-value=16 Score=33.52 Aligned_cols=12 Identities=42% Similarity=0.517 Sum_probs=10.3
Q ss_pred ccCCCccccceE
Q 041371 367 RFSDHRPVYSFF 378 (437)
Q Consensus 367 ~~SDHrPV~a~F 378 (437)
..|||.||.+.|
T Consensus 248 ~~SDH~PV~~~l 259 (260)
T 2a40_B 248 AISDHYPVEVTL 259 (260)
T ss_dssp HHCSBCCEEEEB
T ss_pred hcCCCCeEEEEe
Confidence 579999999865
Done!