BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 041372
(564 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
pdb|3VTA|B Chain B, Crystal Structure Of Cucumisin, A Subtilisin-Like
Endoprotease From Cucumis Melo L
Length = 621
Score = 288 bits (736), Expect = 7e-78, Method: Compositional matrix adjust.
Identities = 190/564 (33%), Positives = 300/564 (53%), Gaps = 53/564 (9%)
Query: 20 RDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFNLCYXXXXXXX 79
RD++GHGTHTAST AG +V +L+G+ GTARGG P AR+A YK CW + C
Sbjct: 89 RDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAA 148
Query: 80 XXXXXXXVVDILSLSFGPSPPQPIYFEDSTSIGTFHAFQKGILVSASAGN---SIFPGTA 136
VDI+SLS G + P+ YF D+ +IG+FHA ++GIL S SAGN + F T
Sbjct: 149 YDDAIADGVDIISLSVGGANPRH-YFVDAIAIGSFHAVERGILTSNSAGNGGPNFF--TT 205
Query: 137 TNVAPGILTVAASSVDRKSYSNIYLGNSKILKGSSLNPLETKTFYGLIAGSTAAAQLQQQ 196
+++P +L+VAAS++DRK + + +GN + +G S+N + + +Y L++G +
Sbjct: 206 ASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVSINTFDNQ-YYPLVSG--------RD 256
Query: 197 MQGSVSGYSTLSGFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFVRESGGVGMILI 256
+ + ST S FC + +++ + L+KGKIVVC EAS F + G +L+
Sbjct: 257 IPNTGFDKST-SRFCTDKSVNPN-LLKGKIVVC--EASFGPHE----FFKSLDGAAGVLM 308
Query: 257 DPNAKDIGFQFVIPATLIGQEEAQELQAYMTAGKNPIARIYPPQTILKTKPAPEMAAFSS 316
N +D + +P++++ + Y+ + ++P A I+ TIL AP + +FSS
Sbjct: 309 TSNTRDYADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTILNAS-APVVVSFSS 367
Query: 317 MGPNIITADIIRSPVA---IEATA-----------EQSVDYNIISGTSMSCPHVSAVAAI 362
GPN T D+I+ ++ +E A ++ +NIISGTSMSCPH++ +A
Sbjct: 368 RGPNRATKDVIKPDISGPGVEILAAWPSVAPVGGIRRNTLFNIISGTSMSCPHITGIATY 427
Query: 363 IKSHHPSWSPXXXXXXXXXXXXVLNNNQQQIRRDPNGSQTTPFDNGSGHINQVAAMNPGL 422
+K+++P+WSP +N R +P F GSGH+N + A+ PGL
Sbjct: 428 VKTYNPTWSPAAIKSALMTTASPMN-----ARFNPQAE----FAYGSGHVNPLKAVRPGL 478
Query: 423 IYDFDSHDIINFLCSTGATPRQLENLTGEIIHCQNP-LPPSYNFNYPSIGVS---NMNGS 478
+YD + D + FLC G + + +TG+ C + ++ NYPS G+S + +
Sbjct: 479 VYDANESDYVKFLCGQGYNTQAVRRITGDYSACTSGNTGRVWDLNYPSFGLSVSPSQTFN 538
Query: 479 LSIHRTVTYYGEGPTVYVGHVNNPTGVNVSVSSAELKFTKTGEKMSFRVDFMPFKKIGGS 538
+RT+T + Y ++ P G+ +SV+ L F G++ SF + I G
Sbjct: 539 QYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVR--GSIKGF 596
Query: 539 FVFGDLTWSNGIHRVRSPIGLNVL 562
V L WS+G+H VRSPI + L
Sbjct: 597 VVSASLVWSDGVHYVRSPITITSL 620
>pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I6S|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3
pdb|3I74|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
pdb|3I74|B Chain B, Crystal Structure Of The Plant Subtilisin-Like Protease
Sbt3 In Complex With A Chloromethylketone Inhibitor
Length = 649
Score = 238 bits (606), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 192/588 (32%), Positives = 274/588 (46%), Gaps = 81/588 (13%)
Query: 13 SISFRSARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFNLCY 72
+I+ SARD+DGHGTH AS AG + VS FG A GTARG AP ARLA+YK + +
Sbjct: 91 NITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNEGTF 150
Query: 73 XXXXXXXXXXXXXXVVDILSLSFGPSPPQPIYFEDSTSIGTFHAFQKGILVSASAGNSIF 132
VD++S+S+G P+Y ED+ SI +F A KG+LVSASAGN
Sbjct: 151 TSDLIAAMDQAVADGVDMISISYGYRF-IPLY-EDAISIASFGAMMKGVLVSASAGNR-G 207
Query: 133 PGTAT--NVAPGILTVAASSVDRKSYSNIYLGNSKILKGSSLNPL-----ETKTFYGLIA 185
PG + N +P IL VA+ DR + LGN ++G SL P ++ Y
Sbjct: 208 PGIGSLNNGSPWILCVASGHTDRTFAGTLTLGNGLKIRGWSLFPARAFVRDSPVIYNKTL 267
Query: 186 GSTAAAQLQQQMQGSVSGYSTLSGFCKNNTLDHHTLIKGKIVVCT--------IEASTDN 237
++ +L Q++ + IV+C + T
Sbjct: 268 SDCSSEELLSQVENP----------------------ENTIVICDDNGDFSDQMRIITRA 305
Query: 238 RREKCIFVRESGGVGMILIDPNAKDIGFQFVIPATLIGQEEAQELQAYMTAGKNPIARIY 297
R + IF+ E GV PN P ++ ++E +++ Y+ P A I
Sbjct: 306 RLKAAIFISEDPGVFRSATFPN----------PGVVVNKKEGKQVINYVKNSVTPTATIT 355
Query: 298 PPQTILKTKPAPEMAAFSSMGPN-----IITADIIRSPVAIEATAEQSV----------- 341
+T L TKPAP +AA S+ GP+ I DI+ V I A +V
Sbjct: 356 FQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSIGTNILL 415
Query: 342 --DYNIISGTSMSCPHVSAVAAIIKSHHPSWSPXXXXXXXXXXXXVLNNNQQQIRRDPNG 399
DY + SGTSM+ PH + +AA++K+ HP WSP L+N ++ I+ N
Sbjct: 416 STDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPIKDSDNN 475
Query: 400 SQTTPFDNGSGHINQVAAMNPGLIYDFDSHDIINFLCSTGATPRQLENL--TGEIIHCQN 457
TP D G+GH++ A++PGL+YD D +N LCS T Q + + + +C N
Sbjct: 476 KAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSASHNCSN 535
Query: 458 PLPPSYNFNYPS-IGVSNMNGSLSI-----HRTVTYYGEGPTVYVGHVNNPTGVNVSVSS 511
PS + NYPS I + ++ G+ ++ RTVT G+G Y + P +SVS
Sbjct: 536 ---PSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSP 592
Query: 512 AELKFTKTGEKMSFRVDFMPFKKIGGSFVFGDLTW--SNGIHRVRSPI 557
L F EK S+ + G S G +TW NG H VRSPI
Sbjct: 593 QILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPI 640
>pdb|1AK9|A Chain A, Subtilisin Mutant 8321
Length = 275
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 41/62 (66%), Gaps = 4/62 (6%)
Query: 310 EMAAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPS 369
+ A+FSS+GP + D++ V+I++T + Y SGTSM+ PHV+ AA+I S HP+
Sbjct: 185 QRASFSSVGPEL---DVMAPGVSIQSTLPGN-KYGAKSGTSMASPHVAGAAALILSKHPN 240
Query: 370 WS 371
W+
Sbjct: 241 WT 242
>pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
Length = 275
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 4/62 (6%)
Query: 310 EMAAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPS 369
+ A+FSS+GP + D++ V+I++T + Y +GTSM+ PHV+ AA+I S HP+
Sbjct: 185 QRASFSSVGPEL---DVMAPGVSIQSTLPGN-KYGAYNGTSMASPHVAGAAALILSKHPN 240
Query: 370 WS 371
W+
Sbjct: 241 WT 242
>pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin
Bpn' And Streptomyces Subtilisin Inhibitor At 1.8
Angstroms Resolution
pdb|1SIB|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|1SBN|E Chain E, Refined Crystal Structures Of Subtilisin Novo In Complex
With Wild-Type And Two Mutant Eglins. Comparison With
Other Serine Proteinase Inhibitor Complexes
pdb|3SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|5SIC|E Chain E, Molecular Recognition At The Active Site Of Subtilisin
Bpn': Crystallographic Studies Using Genetically
Engineered Proteinaceous Inhibitor Ssi (Streptomyces
Subtilisin Inhibitor)
pdb|1SUP|A Chain A, Subtilisin Bpn' At 1.6 Angstroms Resolution: Analysis Of
Discrete Disorder And Comparison Of Crystal Forms
pdb|2ST1|A Chain A, The Three-dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 4/62 (6%)
Query: 310 EMAAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPS 369
+ A+FSS+GP + D++ V+I++T + Y +GTSM+ PHV+ AA+I S HP+
Sbjct: 185 QRASFSSVGPEL---DVMAPGVSIQSTLPGN-KYGAYNGTSMASPHVAGAAALILSKHPN 240
Query: 370 WS 371
W+
Sbjct: 241 WT 242
>pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of
Subtilisin Bpn And Subtilisin Novo
pdb|1SBT|A Chain A, Atomic Coordinates For Subtilisin Bpn (Or Novo)
Length = 275
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 4/62 (6%)
Query: 310 EMAAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPS 369
+ A+FSS+GP + D++ V+I++T + Y +GTSM+ PHV+ AA+I S HP+
Sbjct: 185 QRASFSSVGPEL---DVMAPGVSIQSTLPGN-KYGAYNGTSMASPHVAGAAALILSKHPN 240
Query: 370 WS 371
W+
Sbjct: 241 WT 242
>pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution
pdb|1TM1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2
pdb|1TM3|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k Mutant
pdb|1TM4|E Chain E, Crystal Structure Of The Complex Of Subtilsin Bpn'with
Chymotrypsin Inhibitor 2 M59g Mutant
pdb|1TM5|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59a Mutant
pdb|1TM7|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59y Mutant
pdb|1TMG|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59f Mutant
pdb|1TO1|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 Y61a Mutant
pdb|1TO2|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59k, In Ph 9 Cryosoak
pdb|1Y1K|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58a Mutant
pdb|1Y33|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 T58p Mutant
pdb|1Y34|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60a Mutant
pdb|1Y3B|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 E60s Mutant
pdb|1Y3C|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R62a Mutant
pdb|1Y3D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R67a Mutant
pdb|1Y3F|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 F69a Mutant
pdb|1Y48|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 R65a Mutant
pdb|1Y4A|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59r/e60s Mutant
pdb|1Y4D|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With
Chymotrypsin Inhibitor 2 M59rE60S MUTANT
Length = 281
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 4/62 (6%)
Query: 310 EMAAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPS 369
+ A+FSS+GP + D++ V+I++T + Y +GTSM+ PHV+ AA+I S HP+
Sbjct: 185 QRASFSSVGPEL---DVMAPGVSIQSTLPGN-KYGAYNGTSMASPHVAGAAALILSKHPN 240
Query: 370 WS 371
W+
Sbjct: 241 WT 242
>pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d,
G169a, Q206c, N218s)
Length = 275
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Query: 310 EMAAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPS 369
+ A+FSS+GP + D++ V+I +T + Y SGTSM+ PHV+ AA+I S HP+
Sbjct: 185 QRASFSSVGPEL---DVMAPGVSIXSTLPGN-KYGAYSGTSMASPHVAGAAALILSKHPN 240
Query: 370 WS 371
W+
Sbjct: 241 WT 242
>pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 35%
Dimethylformamide
pdb|1YJA|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (M50f,
N76d, G169a, Q206c, N218s, And K256y) In 20%
Dimethylformamide
pdb|1SBH|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) Mutant (M50f,
N76d, G169a, Q206c, N218s, K256y)
pdb|1YJC|A Chain A, Subtilisin Bpn' 8397+1 (e.c. 3.4.21.14) (mutant With Met
50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169
Replaced By Ala, Gln 206 Replaced By Cys, Asn 218
Replaced By Ser And Lys 256 Replaced By Tyr) (m50f,
N76d, G169a, Q206c, N218s, And K256y) In 50%
Dimethylformamide
Length = 275
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Query: 310 EMAAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPS 369
+ A+FSS+GP + D++ V+I +T + Y SGTSM+ PHV+ AA+I S HP+
Sbjct: 185 QRASFSSVGPEL---DVMAPGVSIXSTLPGN-KYGAYSGTSMASPHVAGAAALILSKHPN 240
Query: 370 WS 371
W+
Sbjct: 241 WT 242
>pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of
Subtilisin Bpn'
Length = 275
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 41/62 (66%), Gaps = 4/62 (6%)
Query: 310 EMAAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPS 369
+ A+FSS+GP + D++ V+I++T + Y +GTSM+ PHV+ AA+I S HP+
Sbjct: 185 QRASFSSVGPEL---DVMAPGVSIQSTLPGN-KYGAYNGTSMASPHVAGAAALILSKHPN 240
Query: 370 WS 371
W+
Sbjct: 241 WT 242
>pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Query: 310 EMAAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPS 369
+ A+FSS+GP + D++ V+I++T + Y SGT M+ PHV+ AA+I S HP+
Sbjct: 185 QRASFSSVGPEL---DVMAPGVSIQSTLPGN-KYGAYSGTXMASPHVAGAAALILSKHPN 240
Query: 370 WS 371
W+
Sbjct: 241 WT 242
>pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design
pdb|1SUD|A Chain A, Calcium-Independent Subtilisin By Design
Length = 275
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Query: 310 EMAAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPS 369
+ A+FSS+GP + D++ V+I++T + Y SGT M+ PHV+ AA+I S HP+
Sbjct: 185 QRASFSSVGPEL---DVMAPGVSIQSTLPGN-KYGAKSGTXMASPHVAGAAALILSKHPN 240
Query: 370 WS 371
W+
Sbjct: 241 WT 242
>pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186
Length = 275
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Query: 310 EMAAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPS 369
+ A+FSS+GP + D++ V+I++T + Y SGT M+ PHV+ AA+I S HP+
Sbjct: 185 QRASFSSVGPEL---DVMAPGVSIQSTLPGN-KYGAYSGTXMASPHVAGAAALILSKHPN 240
Query: 370 WS 371
W+
Sbjct: 241 WT 242
>pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam
Length = 266
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 310 EMAAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPS 369
+ A FSS+GP + D++ V+I +T Y +SGTSM+ PHV+ AA+I S HP+
Sbjct: 176 QRAPFSSVGPEL---DVMAPGVSICSTLPGG-KYGALSGTSMASPHVAGAAALILSKHPN 231
Query: 370 WS 371
W+
Sbjct: 232 WT 233
>pdb|1UBN|A Chain A, Selenosubtilisin Bpn
Length = 275
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Query: 310 EMAAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPS 369
+ A+FSS+GP + D++ V+I++T + Y +GT M+ PHV+ AA+I S HP+
Sbjct: 185 QRASFSSVGPEL---DVMAPGVSIQSTLPGN-KYGAYNGTXMASPHVAGAAALILSKHPN 240
Query: 370 WS 371
W+
Sbjct: 241 WT 242
>pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In
Complex With Subtilisin Bpn'
Length = 275
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Query: 310 EMAAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPS 369
+ A+FSS+GP + D++ V+I++T + Y +GT M+ PHV+ AA+I S HP+
Sbjct: 185 QRASFSSVGPEL---DVMAPGVSIQSTLPGN-KYGAYNGTXMASPHVAGAAALILSKHPN 240
Query: 370 WS 371
W+
Sbjct: 241 WT 242
>pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin
Bpn(Prime) Through Incremental Changes In The Free
Energy Of Unfolding
Length = 275
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Query: 310 EMAAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPS 369
+ A+FSS+GP + D++ V+I +T + Y SGTSM+ PHV+ AA+I S HP+
Sbjct: 185 QRASFSSVGPEL---DVMAPGVSICSTLPGN-KYGAKSGTSMASPHVAGAAALILSKHPN 240
Query: 370 WS 371
W+
Sbjct: 241 WT 242
>pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal
Growth Mutant
Length = 266
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Query: 310 EMAAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPS 369
+ A+FSS+GP + D++ V+I +T + Y SGTSM+ PHV+ AA+I S HP+
Sbjct: 176 QRASFSSVGPEL---DVMAPGVSICSTLPGN-KYGAKSGTSMASPHVAGAAALILSKHPN 231
Query: 370 WS 371
W+
Sbjct: 232 WT 233
>pdb|1AQN|A Chain A, Subtilisin Mutant 8324
pdb|1AU9|A Chain A, Subtilisin Bpn' Mutant 8324 In Citrate
Length = 275
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Query: 310 EMAAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPS 369
+ A+FSS+GP + D++ V+I +T + Y SGTSM+ PHV+ AA+I S HP+
Sbjct: 185 QRASFSSVGPEL---DVMAPGVSICSTLPGN-KYGAKSGTSMASPHVAGAAALILSKHPN 240
Query: 370 WS 371
W+
Sbjct: 241 WT 242
>pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant
Length = 266
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Query: 310 EMAAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPS 369
+ A+FSS+GP + D++ V+I +T + Y SGTSM+ PHV+ AA+I S HP+
Sbjct: 176 QRASFSSVGPEL---DVMAPGVSICSTLPGN-KYGAKSGTSMASPHVAGAAALILSKHPN 231
Query: 370 WS 371
W+
Sbjct: 232 WT 233
>pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A
Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6.
Crystallization Temperature 20 C Diffraction
Temperature- 160 C
Length = 266
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Query: 310 EMAAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPS 369
+ A+FSS+GP + D++ V+I +T + Y SGT+M+ PHV+ AA+I S HP+
Sbjct: 176 QRASFSSVGPEL---DVMAPGVSIVSTLPGN-KYGAKSGTAMASPHVAGAAALILSKHPN 231
Query: 370 WS 371
W+
Sbjct: 232 WT 233
>pdb|1SUA|A Chain A, Subtilisin Bpn'
Length = 266
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Query: 310 EMAAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPS 369
+ A+FSS+GP + D++ V+I +T + Y SGT+M+ PHV+ AA+I S HP+
Sbjct: 176 QRASFSSVGPEL---DVMAPGVSIVSTLPGN-KYGAKSGTAMASPHVAGAAALILSKHPN 231
Query: 370 WS 371
W+
Sbjct: 232 WT 233
>pdb|1GNS|A Chain A, Subtilisin Bpn'
Length = 263
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 310 EMAAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPS 369
+ A+FSS+GP + D++ V+I +T + Y SGT M+ PHV+ AA+I S HP+
Sbjct: 173 QRASFSSVGPEL---DVMAPGVSIWSTLPGN-KYGAKSGTXMASPHVAGAAALILSKHPN 228
Query: 370 WS 371
W+
Sbjct: 229 WT 230
>pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam
pdb|3BGO|S Chain S, Azide Complex Of Engineered Subtilisin Subt_bacam
pdb|3CO0|S Chain S, Substrate Complex Of Fluoride-Sensitive Engineered
Subtilisin Subt_bacam
Length = 266
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 310 EMAAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPS 369
+ A FSS+GP + D++ V+I +T Y +SGT+M+ PHV+ AA+I S HP+
Sbjct: 176 QRAPFSSVGPEL---DVMAPGVSICSTLPGG-KYGALSGTAMASPHVAGAAALILSKHPN 231
Query: 370 WS 371
W+
Sbjct: 232 WT 233
>pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus
Amyloliquefaciens Subtilisin At 1.8 Angstroms And An
Analysis Of The Structural Consequences Of Peroxide
Inactivation
Length = 275
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Query: 310 EMAAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPS 369
+ A+FSS+GP + D++ V+I++T + Y +GTS + PHV+ AA+I S HP+
Sbjct: 185 QRASFSSVGPEL---DVMAPGVSIQSTLPGN-KYGAYNGTSXASPHVAGAAALILSKHPN 240
Query: 370 WS 371
W+
Sbjct: 241 WT 242
>pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture
pdb|1MPT|A Chain A, Crystal Structure Of A New Alkaline Serine Protease
(M-Protease) From Bacillus Sp. Ksm-K16
Length = 269
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 312 AAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPSWS 371
A+FS G + DI+ V +++T S Y ++GTSM+ PHV+ VAA++K +PSWS
Sbjct: 181 ASFSQYGAGL---DIVAPGVNVQSTYPGST-YASLNGTSMATPHVAGVAALVKQKNPSWS 236
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 15/114 (13%)
Query: 18 SARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARL-AIYKACWFNLCYXXXX 76
S +D +GHGTH A TIA A+ ++ + G+ APSA L A+
Sbjct: 55 STQDGNGHGTHVAGTIA-ALNNSIGVLGV--------APSAELYAVKVLGASGSGSVSSI 105
Query: 77 XXXXXXXXXXVVDILSLSFGPSPPQPIYFEDSTSIGTFHAFQKGILVSASAGNS 130
+ + +LS G SP E + + A +G+LV A++GNS
Sbjct: 106 AQGLEWAGNNGMHVANLSLG-SPSPSATLEQAVN----SATSRGVLVVAASGNS 154
>pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant
Length = 266
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 4/62 (6%)
Query: 310 EMAAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPS 369
+ A+FSS+GP + D++ V+I +T + Y SGT M+ PHV+ AA+I S HP+
Sbjct: 176 QRASFSSVGPEL---DVMAPGVSICSTLPGN-KYGAKSGTXMASPHVAGAAALILSKHPN 231
Query: 370 WS 371
W+
Sbjct: 232 WT 233
>pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic
Bacterium And The Leech Inhibitor Eglin-C
Length = 275
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 44/80 (55%), Gaps = 9/80 (11%)
Query: 297 YP---PQTIL--KTKPAPEMAAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSM 351
YP P TI A + A+FSS G + D++ V+I++T Y +GTSM
Sbjct: 167 YPAKYPSTIAVGAVNSANQRASFSSAGSEL---DVMAPGVSIQSTLPGGT-YGAYNGTSM 222
Query: 352 SCPHVSAVAAIIKSHHPSWS 371
+ PHV+ AA+I S HP+W+
Sbjct: 223 ATPHVAGAAALILSKHPTWT 242
>pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline
Protease, Subtilisin Bl, At 1.4 Angstroms Resolution
Length = 269
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 294 ARIYPPQTILKTKPAPEMAAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSC 353
AR + T A+FS G + DI+ V +++T S Y ++GTSM+
Sbjct: 163 ARYANAMAVGATDQNNNRASFSQYGAGL---DIVAPGVNVQSTYPGST-YASLNGTSMAT 218
Query: 354 PHVSAVAAIIKSHHPSWS 371
PHV+ AA++K +PSWS
Sbjct: 219 PHVAGAAALVKQKNPSWS 236
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 15/114 (13%)
Query: 18 SARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFN-LCYXXXX 76
S +D +GHGTH A TIA A+ ++ + G+ APSA L K +
Sbjct: 55 STQDGNGHGTHVAGTIA-ALNNSIGVLGV--------APSAELYAVKVLGADGRGAISSI 105
Query: 77 XXXXXXXXXXVVDILSLSFGPSPPQPIYFEDSTSIGTFHAFQKGILVSASAGNS 130
+ + +LS G SP E + + A +G+LV A++GNS
Sbjct: 106 AQGLEWAGNNGMHVANLSLG-SPSPSATLEQAVN----SATSRGVLVVAASGNS 154
>pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis
Natto
Length = 275
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 38/62 (61%), Gaps = 4/62 (6%)
Query: 310 EMAAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPS 369
+ A+FSS+G + D++ V+I++T Y +GT M+ PHV+ AA+I S HP+
Sbjct: 185 QRASFSSVGSEL---DVMAPGVSIQSTLPGGT-YGAYNGTXMATPHVAGAAALILSKHPT 240
Query: 370 WS 371
W+
Sbjct: 241 WT 242
>pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant
Length = 269
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 294 ARIYPPQTILKTKPAPEMAAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSC 353
AR + T A+FS G + DI+ V +++T S Y ++GTSM+
Sbjct: 163 ARYANAMAVGATDQNNNRASFSQYGAGL---DIVAPGVNVQSTYPGST-YASLNGTSMAT 218
Query: 354 PHVSAVAAIIKSHHPSWS 371
PHV+ AA++K +PSWS
Sbjct: 219 PHVAGAAALVKQKNPSWS 236
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 9/47 (19%)
Query: 18 SARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYK 64
S +D +GHGTH A TIA A+ ++ + G+ APSA L K
Sbjct: 55 STQDGNGHGTHVAGTIA-ALNNSIGVLGV--------APSAELYAVK 92
>pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18
Structures
Length = 269
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 312 AAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPSWS 371
A+FS G + DI+ V +++T S Y ++GTSM+ PHV+ AA++K +PSWS
Sbjct: 181 ASFSQYGAGL---DIVAPGVNVQSTYPGST-YASLNGTSMATPHVAGAAALVKQKNPSWS 236
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 18 SARDSDGHGTHTASTIAGAVVENVSLFGMA 47
S +D +GHGTH A TIA A+ ++ + G+A
Sbjct: 55 STQDGNGHGTHVAGTIA-ALNNSIGVLGVA 83
>pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N
Length = 269
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 312 AAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPSWS 371
A+FS G + DI+ V +++T S Y ++GTSM+ PHV+ AA++K +PSWS
Sbjct: 181 ASFSQYGAGL---DIVAPGVNVQSTYPGST-YASLNGTSMATPHVAGAAALVKQKNPSWS 236
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 18 SARDSDGHGTHTASTIAGAVVENVSLFGMA 47
S +D +GHGTH A TIA A+ ++ + G+A
Sbjct: 55 STQDGNGHGTHVAGTIA-ALNNSIGVLGVA 83
>pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin
pdb|1TK2|A Chain A, Crystal Structure Of The Complex Formed Between Alkaline
Proteinase Savinase And Gramicidin S At 1.5a Resolution
pdb|1JEA|A Chain A, Altered Topology And Flexibility In Engineered Subtilisin
pdb|1SVN|A Chain A, Savinase
pdb|3BX1|A Chain A, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|3BX1|B Chain B, Complex Between The Barley Alpha-AmylaseSUBTILISIN
Inhibitor And The Subtilisin Savinase
pdb|1GCI|A Chain A, The 0.78 Angstroms Structure Of A Serine Protease-Bacillus
Lentus Subtilisin
Length = 269
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 37/60 (61%), Gaps = 4/60 (6%)
Query: 312 AAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPSWS 371
A+FS G + DI+ V +++T S Y ++GTSM+ PHV+ AA++K +PSWS
Sbjct: 181 ASFSQYGAGL---DIVAPGVNVQSTYPGST-YASLNGTSMATPHVAGAAALVKQKNPSWS 236
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 15/114 (13%)
Query: 18 SARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARL-AIYKACWFNLCYXXXX 76
S +D +GHGTH A TIA A+ ++ + G+ APSA L A+
Sbjct: 55 STQDGNGHGTHVAGTIA-ALNNSIGVLGV--------APSAELYAVKVLGASGSGSVSSI 105
Query: 77 XXXXXXXXXXVVDILSLSFGPSPPQPIYFEDSTSIGTFHAFQKGILVSASAGNS 130
+ + +LS G SP E + + T +G+LV A++GNS
Sbjct: 106 AQGLEWAGNNGMHVANLSLG-SPSPSATLEQAVNSAT----SRGVLVVAASGNS 154
>pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex
Length = 275
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 310 EMAAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPS 369
+ A+FSS G + D++ V+I++T Y +GT M+ PHV+ AA+I S HP+
Sbjct: 185 QRASFSSAGSEL---DVMAPGVSIQSTLPGGT-YGAYNGTCMATPHVAGAAALILSKHPT 240
Query: 370 WS 371
W+
Sbjct: 241 WT 242
>pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87)
K27rV104YN123ST274A
Length = 269
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 294 ARIYPPQTILKTKPAPEMAAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSC 353
AR + T A+FS G + DI+ V +++T S Y ++GT M+
Sbjct: 163 ARYANAMAVGATDQNNNRASFSQYGAGL---DIVAPGVNVQSTYPGST-YASLNGTXMAT 218
Query: 354 PHVSAVAAIIKSHHPSWS 371
PHV+ AA++K +PSWS
Sbjct: 219 PHVAGAAALVKQKNPSWS 236
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 9/47 (19%)
Query: 18 SARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYK 64
S +D +GHGTH A TIA A+ ++ + G+ APSA L K
Sbjct: 55 STQDGNGHGTHVAGTIA-ALNNSIGVLGV--------APSAELYAVK 92
>pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin
Length = 269
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 294 ARIYPPQTILKTKPAPEMAAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSC 353
AR + T A+FS G + DI+ V +++T S Y ++GT M+
Sbjct: 163 ARYANAMAVGATDQNNNRASFSQYGAGL---DIVAPGVNVQSTYPGST-YASLNGTXMAT 218
Query: 354 PHVSAVAAIIKSHHPSWS 371
PHV+ AA++K +PSWS
Sbjct: 219 PHVAGAAALVKQKNPSWS 236
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 9/47 (19%)
Query: 18 SARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYK 64
S +D +GHGTH A TIA A+ ++ + G+ APSA L K
Sbjct: 55 STQDGNGHGTHVAGTIA-ALDNSIGVLGV--------APSAELYAVK 92
>pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus
Lentus
Length = 269
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 312 AAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPSWS 371
A+FS G + DI+ V +++T S Y ++GT M+ PHV+ AA++K +PSWS
Sbjct: 181 ASFSQYGAGL---DIVAPGVNVQSTYPGST-YASLNGTXMATPHVAGAAALVKQKNPSWS 236
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Query: 18 SARDSDGHGTHTASTIAGAVVENVSLFGMA 47
S +D +GHGTH A TIA A+ ++ + G+A
Sbjct: 55 STQDGNGHGTHVAGTIA-ALNNSIGVLGVA 83
>pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I
Length = 269
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 294 ARIYPPQTILKTKPAPEMAAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSC 353
AR + T A+FS G + DI+ V +++T S Y ++GT M+
Sbjct: 163 ARYANAMAVGATDQNNNRASFSQYGAGL---DIVAPGVNVQSTYPGST-YASLNGTXMAT 218
Query: 354 PHVSAVAAIIKSHHPSWS 371
PHV+ AA++K +PSWS
Sbjct: 219 PHVAGAAALVKQKNPSWS 236
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 15/114 (13%)
Query: 18 SARDSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFNLCYXXXXX 77
S +D +GHGTH A TIA A+ ++ + G+ APSA L K +
Sbjct: 55 STQDGNGHGTHVAGTIA-ALDNSIGVLGV--------APSAELYAVKVLGASGSGAISSI 105
Query: 78 XXXXX-XXXXVVDILSLSFGPSPPQPIYFEDSTSIGTFHAFQKGILVSASAGNS 130
+ + +LS G SP E + + A +G+LV A++GNS
Sbjct: 106 AQGLEWAGNNGMHVANLSLG-SPSPSATLEQAVN----SATSRGVLVVAASGNS 154
>pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
pdb|3AFG|B Chain B, Crystal Structure Of Pron-Tk-Sp From Thermococcus
Kodakaraensis
Length = 539
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 343 YNIISGTSMSCPHVSAVAAIIKSHHPSWSP 372
Y GT+M+ PHV+ +AA++ HPSW+P
Sbjct: 352 YTAAPGTAMATPHVAGIAALLLQAHPSWTP 381
Score = 28.9 bits (63), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 47/117 (40%), Gaps = 18/117 (15%)
Query: 21 DSDGHGTHTASTIAGAVVENVSLFGMARGTARGGAPSARLAIYKACWFNLCYXXXXXXXX 80
D +GHGTH AS AG + G +G AP A+L K N
Sbjct: 176 DDNGHGTHVASIAAGT-------GAASNGKYKGMAPGAKLVGIKV--LNGQGSGSISDII 226
Query: 81 XXXXXXV-------VDILSLSFGPSPPQPIYFEDSTSIGTFHAFQKGILVSASAGNS 130
V + +++LS G S Q DS S +A+ G++V +AGNS
Sbjct: 227 NGVDWAVQNKDKYGIKVINLSLGSS--QSSDGTDSLSQAVNNAWDAGLVVVVAAGNS 281
>pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The
C5a Peptidase From Streptococcus Pyogenes (Scpa)
Length = 936
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 85/378 (22%), Positives = 145/378 (38%), Gaps = 66/378 (17%)
Query: 25 HGTHTASTIAG-AVVENVSLFGMARGTARGGAPSARLAIYKACWFN--LCYXXXXXXXXX 81
HGTH + ++G A E + + G P A+L + + N Y
Sbjct: 97 HGTHVSGILSGNAPSETKEPYRL-----EGAMPEAQLLLMRVEIVNGLADYARNYAQAIR 151
Query: 82 XXXXXVVDILSLSFGPSPPQPIYFEDSTSIGTFHAFQKGILVSASAGNSIFPGTATNV-- 139
++++SFG + D T +A KG+ + SAGN G T +
Sbjct: 152 DAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPL 211
Query: 140 --------------APGILTVAASSVDRKSYSNIYLGNSKILKGSSLNPLETKTFYGLIA 185
A LTVA+ S D K + + + + L T F A
Sbjct: 212 ADHPDYGVVGTPAAADSTLTVASYSPD-KQLTETATVKTDDHQAKEMPVLSTNRFEPNKA 270
Query: 186 GSTAAAQLQQQMQGSVSGYSTLSGFCKNNTLDHHTLIKGKIVVCTIEASTDNRREKCIFV 245
A A G +++ D +KGKI + IE + ++K
Sbjct: 271 YDYAYAN---------------RGMKEDDFKD----VKGKIAL--IERGDIDFKDKIANA 309
Query: 246 RESGGVGMILIDPNAKDIGFQFVIP------ATLIGQEEAQELQAYMTAGKNPIARIYPP 299
+++G VG+++ D +D GF +P A I +++ L+ K I P
Sbjct: 310 KKAGAVGVLIYD--NQDKGFPIELPNVDQMPAAFISRKDGLLLK---DNSKKTITFNATP 364
Query: 300 QTILKTKPAPEMAAFSSMGPNIITAD-----IIRSPVAIEATAEQSVDYNIISGTSMSCP 354
+ +L T +++ FSS G +TAD I +P ++ + Y +SGTSMS P
Sbjct: 365 K-VLPTASDTKLSRFSSWG---LTADGNIKPDIAAPGQDILSSVANNKYAKLSGTSMSAP 420
Query: 355 HVSAVAAIIKSHHPSWSP 372
V+ + +++ + + P
Sbjct: 421 LVAGIMGLLQKQYETQYP 438
>pdb|2IXT|A Chain A, Sphericase
pdb|2IXT|B Chain B, Sphericase
pdb|3D43|A Chain A, The Crystal Structure Of Sph At 0.8a
pdb|3D43|B Chain B, The Crystal Structure Of Sph At 0.8a
Length = 310
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 343 YNIISGTSMSCPHVSAVAAIIKSHHPSWS 371
YN ISGTSM+ PHVS +AA I + +PS S
Sbjct: 243 YNTISGTSMATPHVSGLAAKIWAENPSLS 271
Score = 33.9 bits (76), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 20/122 (16%)
Query: 18 SARDSDGHGTHTAST-IAGAVVENVSLFGMARGTARGGAPSARLAIYK------ACWFNL 70
S D +GHGTH A T +A + ++G+A P A L YK + + +
Sbjct: 64 SCTDRNGHGTHVAGTALADGGSDQAGIYGVA--------PDADLWAYKVLLDSGSGYSDD 115
Query: 71 CYXXXXXXXXXXXXXXVVDILSLSFGPSPPQPIYFEDSTSIGTFHAFQKGILVSASAGNS 130
I+S+S G S + S +A+ KG+L+ A+AGNS
Sbjct: 116 IAAAIRHAADQATATGTKTIISMSLGSSANNSL-----ISSAVNYAYSKGVLIVAAAGNS 170
Query: 131 IF 132
+
Sbjct: 171 GY 172
>pdb|1V6C|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1V6C|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like
Protease Apa1 From Antarctic Psychrotroph
Pseudoalteromonas Sp. As-11
pdb|1WVM|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1WVM|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-Like Serine
Protease Apa1 From Antarctic Psychrotroph
Pseudoaleromonas Sp. As-11, Complexed With Inhibitor
Chymostatin
pdb|1Y9Z|A Chain A, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
pdb|1Y9Z|B Chain B, Crystal Structure Of Psychrophilic Subtilisin-like Serine
Protease From Antarctic Psychrotroph Pseudoalteromonas
Sp. As-11 At 0.14 Nm Resolution
Length = 441
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 342 DYNIISGTSMSCPHVSAVAAIIKSHHPSWS 371
DY +GTSM+ PHVS VA ++ S+HP S
Sbjct: 361 DYEYYNGTSMATPHVSGVATLVWSYHPECS 390
>pdb|1EA7|A Chain A, Sphericase
Length = 310
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 21/29 (72%)
Query: 343 YNIISGTSMSCPHVSAVAAIIKSHHPSWS 371
YN ISGT M+ PHVS +AA I + +PS S
Sbjct: 243 YNTISGTXMATPHVSGLAAKIWAENPSLS 271
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 20/122 (16%)
Query: 18 SARDSDGHGTHTAST-IAGAVVENVSLFGMARGTARGGAPSARLAIYK------ACWFNL 70
S D +GHGTH A T +A + ++G+A P A L YK + + +
Sbjct: 64 SCTDRNGHGTHVAGTALADGGSDQAGIYGVA--------PDADLWAYKVLLDSGSGYSDD 115
Query: 71 CYXXXXXXXXXXXXXXVVDILSLSFGPSPPQPIYFEDSTSIGTFHAFQKGILVSASAGNS 130
I+S+S G S + S +A+ KG+L+ A+AGNS
Sbjct: 116 IAAAIRHAADQATATGTKTIISMSLGSSANNSL-----ISSAVNYAYSKGVLIVAAAGNS 170
Query: 131 IF 132
+
Sbjct: 171 GY 172
>pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|B Chain B, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|3QTL|C Chain C, Structural Basis For Dual-Inhibition Mechanism Of A
Non-Classical Kazal-Type Serine Protease Inhibitor From
Horseshoe Crab In Complex With Subtilisin
pdb|4HX2|A Chain A, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
pdb|4HX2|C Chain C, Crystal Structure Of Streptomyces Caespitosus Sermetstatin
In Complex With Bacillus Licheniformis Subtilisin
Length = 274
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 312 AAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPSWS 371
A+FSS+G + + +P A + + Y ++GTSM+ PHV+ AA+I S HP+ S
Sbjct: 186 ASFSSVGAELE----VMAPGAGVYSTYPTNTYATLNGTSMASPHVAGAAALILSKHPNLS 241
>pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex
Formed Between Subtilisin Carlsberg And Eglin C, An
Elastase Inhibitor From The Leech Hirudo Medicinalis.
Structural Analysis, Subtilisin Structure And Interface
Geometry
pdb|2SEC|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein
Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And
Ci-2- Subtilisin Novo
pdb|1OYV|A Chain A, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1OYV|B Chain B, Crystal Structure Of Tomato Inhibitor-Ii In A Ternary
Complex With Subtilisin Carlsberg
pdb|1R0R|E Chain E, 1.1 Angstrom Resolution Structure Of The Complex Between
The Protein Inhibitor, Omtky3, And The Serine Protease,
Subtilisin Carlsberg
pdb|1AF4|A Chain A, Crystal Structure Of Subtilisin Carlsberg In Anhydrous
Dioxane
pdb|1BE6|A Chain A, Trans-Cinnamoyl-Subtilisin In Anhydrous Acetonitrile
pdb|1BE8|A Chain A, Trans-Cinnamoyl-Subtilisin In Water
pdb|1BFK|A Chain A, Crystal Structure Of Subtilisin Carlsberg In 40%
Acetonitrile
pdb|1BFU|A Chain A, Subtilisin Carlsberg In 20% Dioxane
pdb|1SBC|A Chain A, The Refined Crystal Structure Of Subtilisin Carlsberg At
2.5 Angstroms Resolution
pdb|1SCA|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCB|A Chain A, Enzyme Crystal Structure In A Neat Organic Solvent
pdb|1SCD|A Chain A, X-Ray Crystal Structure Of Cross-Linked Subtilism
Carlsberg In Water Vs. Acetonitrile
pdb|2WUV|A Chain A, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile
pdb|2WUW|E Chain E, Crystallographic Analysis Of Counter-Ion Effects On
Subtilisin Enzymatic Action In Acetonitrile (Native
Data)
Length = 274
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 312 AAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPSWS 371
A+FSS+G + + +P A + + Y ++GTSM+ PHV+ AA+I S HP+ S
Sbjct: 186 ASFSSVGAELE----VMAPGAGVYSTYPTNTYATLNGTSMASPHVAGAAALILSKHPNLS 241
>pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By
N-(Tert-Butoxycarbonyl-Alanyl-
Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation
Of Covalent Enzyme-Inhibitor Linkage In The Form Of A
Carbamate Derivative
Length = 276
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 312 AAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPSWS 371
A+FSS+G + + +P A + + Y ++GTSM+ PHV+ AA+I S HP+ S
Sbjct: 186 ASFSSVGAELE----VMAPGAGVYSTYPTNTYATLNGTSMASPHVAGAAALILSKHPNLS 241
>pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
pdb|1YU6|B Chain B, Crystal Structure Of The Subtilisin Carlsberg:omtky3
Complex
Length = 275
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 312 AAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPSWS 371
A+FSS+G + + +P A + + Y ++GTSM+ PHV+ AA+I S HP+ S
Sbjct: 187 ASFSSVGAELE----VMAPGAGVYSTYPTNTYATLNGTSMASPHVAGAAALILSKHPNLS 242
>pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin
Length = 275
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 312 AAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPSWS 371
A+FSS+G + + +P A + + Y ++GTSM+ PHV+ AA+I S HP+ S
Sbjct: 187 ASFSSVGAELE----VMAPGAGVYSTYPTNTYATLNGTSMASPHVAGAAALILSKHPNLS 242
>pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar)
pdb|3UNX|A Chain A, Bond Length Analysis Of Asp, Glu And His Residues In
Subtilisin Carlsberg At 1.26a Resolution
Length = 274
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 312 AAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPSWS 371
A+FSS+G + + +P A + + Y ++GTSM+ PHV+ AA+I S HP+ S
Sbjct: 186 ASFSSVGAELE----VMAPGAGVYSTYPTNTYATLNGTSMASPHVAGAAALILSKHPNLS 241
>pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme
From A Psychrotroph Serratia Species
Length = 278
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 344 NIISGTSMSCPHVSAVAAIIKSHHPSWSP 372
N ISGTSM+ PHV+ VAA+ +P+ SP
Sbjct: 218 NTISGTSMASPHVAGVAALYLDENPNLSP 246
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%), Gaps = 3/31 (9%)
Query: 19 ARDSDGHGTHTASTIAGA---VVENVSLFGM 46
A D +GHGTH A TI G+ V +NV++ G+
Sbjct: 66 ATDCNGHGTHVAGTIGGSTYGVAKNVNVVGV 96
>pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N-
Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone
Length = 274
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 312 AAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPSWS 371
A+FSS+G + +++ V++ +T + Y ++GTSM+ PHV+ AA+I S +P+ S
Sbjct: 186 ASFSSVGSEL---EVMAPGVSVYSTYPSNT-YTSLNGTSMASPHVAGAAALILSKYPTLS 241
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 53/135 (39%), Gaps = 33/135 (24%)
Query: 8 LESINSISFRSAR----DSDGHGTHTASTIAG--------AVVENVSLFGMARGTARGGA 55
L+ + SF S D +GHGTH A T+A V NVSL+ + + G
Sbjct: 42 LKVVGGASFVSGESYNTDGNGHGTHVAGTVAALDNTTGVLGVAPNVSLYAIKVLNSSGSG 101
Query: 56 PSARLAIYKACWFNLCYXXXXXXXXXXXXXXVVDILSLSFGPSPPQPIYFEDSTSIGTFH 115
Y A + + +D++++S G P + +
Sbjct: 102 S------YSAIVSGIEWATQNG----------LDVINMSLG-GPSGSTALKQAVD----K 140
Query: 116 AFQKGILVSASAGNS 130
A+ GI+V A+AGNS
Sbjct: 141 AYASGIVVVAAAGNS 155
>pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1SEL|B Chain B, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms
Resolution
pdb|1AV7|A Chain A, Subtilisin Carlsberg L-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
pdb|1AVT|A Chain A, Subtilisin Carlsberg D-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|1VSB|A Chain A, Subtilisin Carlsberg L-Para-Chlorophenyl-1-Acetamido
Boronic Acid Inhibitor Complex
pdb|3VSB|A Chain A, Subtilisin Carlsberg D-Naphthyl-1-Acetamido Boronic Acid
Inhibitor Complex
Length = 274
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 312 AAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSHHPSWS 371
A+FSS+G + + +P A + + Y ++GT M+ PHV+ AA+I S HP+ S
Sbjct: 186 ASFSSVGAELE----VMAPGAGVYSTYPTNTYATLNGTXMASPHVAGAAALILSKHPNLS 241
>pdb|4DZT|A Chain A, Aqualysin I: The Crystal Structure Of A Serine Protease
From An Extreme Thermophile, Thermus Aquaticus Yt-1
Length = 276
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 294 ARIYPPQTILKTKPAPEMAAFSSMGPNIITADIIRSPVAI-EATAEQSVDYNIISGTSMS 352
AR+ T+ T + A+FS+ G + D+ +I A ++GTSM+
Sbjct: 168 ARVAEALTVGATTSSDARASFSNYGSCV---DLFAPGASIPSAWYTSDTATQTLNGTSMA 224
Query: 353 CPHVSAVAAIIKSHHPSWSP 372
PHV+ VAA+ +PS +P
Sbjct: 225 TPHVAGVAALYLEQNPSATP 244
>pdb|3TI7|A Chain A, Crystal Structure Of The Basic Protease Bprv From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 301 TILKTKPAPEMAAFSSMGPNIITA---DIIRSPVAIEATAEQSVDYNIISGTSMSCPHVS 357
++ T P + A FS+ G + A I S + + Y + +GTSM+ PHVS
Sbjct: 225 SVGATTPKGKRAPFSNYGARVHLAAPGTNILSTIDVGQAGPVRSSYGMKAGTSMAAPHVS 284
Query: 358 AVAAIIKS 365
VAA++ S
Sbjct: 285 GVAALVIS 292
>pdb|3TI9|A Chain A, Crystal Structure Of The Basic Protease Bprb From The
Ovine Footrot Pathogen, Dichelobacter Nodosus
Length = 352
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 301 TILKTKPAPEMAAFSSMGPNIITA---DIIRSPVAIEATAEQSVDYNIISGTSMSCPHVS 357
++ T P + A FS+ G + A I S + + Y + +GTSM+ PHVS
Sbjct: 225 SVGATTPKGKRAPFSNYGARVHLAAPGTNILSTIDVGQAGPVRSSYGMKAGTSMAAPHVS 284
Query: 358 AVAAIIKS 365
VAA++ S
Sbjct: 285 GVAALVIS 292
>pdb|1PEK|E Chain E, Structure Of The Complex Of Proteinase K With A
Substrate-analogue Hexa-peptide Inhibitor At 2.2
Angstroms Resolution
pdb|1HT3|A Chain A, Mercury Induced Modifications In The Stereochemistry Of
The Active Site Through Cys-73 In A Serine Protease:
Crystal Structure Of The Complex Of A Partially
Modified Proteinase K With Mercury At 1.8 A Resolution
pdb|1PFG|A Chain A, Strategy To Design Inhibitors: Structure Of A Complex Of
Proteinase K With A Designed Octapeptide Inhibitor
N-Ac-Pro-Ala-Pro-Phe-Dala-Ala- Ala-Ala-Nh2 At 2.5a
Resolution
Length = 279
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 16 FRSARDSDGHGTHTASTIAG---AVVENVSLFGM 46
+ S+RD +GHGTH A T+ VV+ LFG+
Sbjct: 60 YYSSRDGNGHGTHCAGTVGSRTYGVVKKTQLFGV 93
>pdb|1DBI|A Chain A, Crystal Structure Of A Thermostable Serine Protease
Length = 280
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 310 EMAAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAIIKSH 366
+A+FS+ G + D++ V I +T + Y +SGTSM+ PHV+ +AA++ S
Sbjct: 190 RLASFSNYGTWV---DVVAPGVDIVSTITGN-RYAYMSGTSMASPHVAGLAALLASQ 242
>pdb|3A3P|A Chain A, Crystal Structure Of Complex Between E201aSA-Subtilisin
And Tk-Propeptide
Length = 329
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 66/162 (40%), Gaps = 22/162 (13%)
Query: 13 SISFRSARDSDGHGTHTASTIAGAVVENVSLFGMARGT---------ARGGAPSARLAIY 63
S R D +GHGTH TIA A+ ++ + G+A G ARG + +AI
Sbjct: 72 STKLRDCADQNGHGTHVIGTIA-ALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIG 130
Query: 64 KACWF----NLCYXXXXXXXXXXXXXXVVDILSLSFGPSPPQPIYFEDSTSIGTFHAFQK 119
A + +++S+S G P Y D A+
Sbjct: 131 IAQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLG-GPADDSYLYDM----IIQAYNA 185
Query: 120 GILVSASAGNSIFPGTATNVA-PGILTVAA--SSVDRKSYSN 158
GI++ A++GN P + A P ++ V A S+ + S+SN
Sbjct: 186 GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSN 227
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 343 YNIISGTSMSCPHVSAVAAIIKSHH 367
Y + GT+M+ PHVS V A+I++ +
Sbjct: 248 YETLMGTAMATPHVSGVVALIQAAY 272
>pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 339
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 343 YNIISGTSMSCPHVSAVAAIIKS 365
Y+ ++GTSM+ PHVS VAA++ S
Sbjct: 269 YSFMAGTSMATPHVSGVAALVIS 291
>pdb|3F7M|A Chain A, Crystal Structure Of Apo Cuticle-Degrading Protease
(Ver112) From Verticillium Psalliotae
Length = 279
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 18 SARDSDGHGTHTASTIAG---AVVENVSLFGM 46
+ARD GHGTH A TI V + VS+FG+
Sbjct: 63 TARDGHGHGTHCAGTIGSKTWGVAKKVSIFGV 94
>pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 343 YNIISGTSMSCPHVSAVAAIIKS 365
Y+ ++GTSM+ PHVS VAA++ S
Sbjct: 269 YSFMAGTSMATPHVSGVAALVIS 291
>pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease
Length = 340
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 19/23 (82%)
Query: 343 YNIISGTSMSCPHVSAVAAIIKS 365
Y+ ++GTSM+ PHVS VAA++ S
Sbjct: 269 YSFMAGTSMATPHVSGVAALVIS 291
>pdb|1R6V|A Chain A, Crystal Structure Of Fervidolysin From Fervidobacterium
Pennivorans, A Keratinolytic Enzyme Related To
Subtilisin
Length = 671
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 14/75 (18%)
Query: 298 PPQTILKTKPAPEMAAFSSMGPNIITADIIRSPVAIEATAEQSVDYNIISGTSMSCPHVS 357
P TIL T P + + N+ A Y+ GTSM+ PHV+
Sbjct: 343 PGVTILSTVPGEDSIGYEGHNENV--------------PATNGGTYDYYQGTSMAAPHVT 388
Query: 358 AVAAIIKSHHPSWSP 372
V A++ P+ P
Sbjct: 389 GVVAVLLQKFPNAKP 403
>pdb|2GKO|A Chain A, S41 Psychrophilic Protease
Length = 309
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 310 EMAAFSSMGPNIITADIIRSPVAIEATAEQSV--------DYNIISGTSMSCPHVSAVAA 361
+A FSS G D + +E +A + Y ISGTSM+ PH + +AA
Sbjct: 201 RVADFSSRGHKRTAGDYVIQKGDVEISAPGAAVYSTWFDGGYATISGTSMASPHAAGLAA 260
Query: 362 IIKSHHPS 369
I + P+
Sbjct: 261 KIWAQSPA 268
>pdb|1S2N|A Chain A, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1S2N|B Chain B, Crystal Strucure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|A Chain A, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
pdb|1SH7|B Chain B, Crystal Structure Of A Cold Adapted Subtilisin-Like Serine
Proteinase
Length = 284
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 343 YNIISGTSMSCPHVSAVAAIIKSHHPSWSP 372
Y ISGTSM+ PHV+ VAA+ + +P
Sbjct: 213 YKTISGTSMATPHVAGVAALYLQENNGLTP 242
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 3/29 (10%)
Query: 21 DSDGHGTHTASTIAGA---VVENVSLFGM 46
D +GHGTH A TI G+ V +NV++ G+
Sbjct: 66 DCNGHGTHVAGTIGGSQYGVAKNVNIVGV 94
>pdb|3PRK|E Chain E, Inhibition Of Proteinase K By
Methoxysuccinyl-Ala-Ala-Pro-Ala- Chloromethyl Ketone.
An X-Ray Study At 2.2-Angstroms Resolution
pdb|1BJR|E Chain E, Complex Formed Between Proteolytically Generated
Lactoferrin Fragment And Proteinase K
pdb|1CNM|A Chain A, Enhancement Of Catalytic Efficiency Of Proteinase K
Through Exposure To Anhydrous Organic Solvent At 70
Degrees Celsius
pdb|1EGQ|A Chain A, Enhancement Of Enzyme Activity Through Three-Phase
Partitioning: Crystal Structure Of A Modified Serine
Proteinase At 1.5 A Resolution
pdb|1OYO|A Chain A, Regulation Of Protease Activity By Melanin: Crystal
Structure Of The Complex Formed Between Proteinase K
And Melanin Monomers At 2.0 Resolution
pdb|1PJ8|A Chain A, Structure Of A Ternary Complex Of Proteinase K, Mercury
And A Substrate-Analogue Hexapeptide At 2.2 A
Resolution
pdb|2DP4|E Chain E, Crystal Structure Of The Complex Formed Between
Proteinase K And A Human Lactoferrin Fragment At 2.9 A
Resolution
pdb|1PTK|A Chain A, Studies On The Inhibitory Action Of Mercury Upon
Proteinase K
pdb|2PKC|A Chain A, Crystal Structure Of Calcium-Free Proteinase K At 1.5
Angstroms Resolution
pdb|2PRK|A Chain A, Synchrotron X-Ray Data Collection And Restrained Least-
Squares Refinement Of The Crystal Structure Of
Proteinase K At 1.5 Angstroms Resolution
pdb|3D9Q|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id23-1 Beamline
pdb|3DDZ|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE0|X Chain X, Proteinase K By Lb Nanotemplate Method After The Second
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE2|X Chain X, Proteinase K By Lb Nanotemplate Method After The Fourth
Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE3|X Chain X, Proteinase K By Classical Hanging Drop Method Before
High X- Ray Dose On Esrf Id23-1 Beamline
pdb|3DE4|X Chain X, Proteinase K By Classical Hanging Drop Method After The
First Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE5|X Chain X, Roteinase K By Classical Hanging Drop Method After The
Second Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE6|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Third Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DE7|X Chain X, Proteinase K By Classical Hanging Drop Method After The
Fourth Step Of High X-Ray Dose On Esrf Id23-1 Beamline
pdb|3DVQ|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dose On Esrf Id14-2 Beamline
pdb|3DVR|X Chain X, Proteinase K By Lb Nanotemplate Method After The First
Step Of High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DVS|X Chain X, Proteinase K By Lb Nanotmplate Method After The Second
Step Of High Dose On Esrf Id14-2 Beamline
pdb|3DW1|X Chain X, Proteinase K By Lb Nanotemplate Method After The Third
Step High X-Ray Dose On Esrf Id14-2 Beamline
pdb|3DW3|X Chain X, Proteinase K By Classical Hanging Drop Method Before
High X Ray Dose On Esrf Id 14-2 Beamline
pdb|3DWE|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X- Ray Dose On Esrf Id14-2 Beamline
pdb|3I2Y|X Chain X, Proteinase K By Classical Hanging Drop Method Before
High X- On Id14-2 Beamline At Esrf
pdb|3I30|X Chain X, Proteinase K By Classical Hanging Drop Method After High
X-R Id14-2 Beamline At Esrf
pdb|3I37|X Chain X, Proteinase K By Lb Nanotemplate Method Before High X-Ray
Dos 2 Beamline At Esrf
pdb|3I34|X Chain X, Proteinase K By Lb Nanotemplate Method After High X-Ray
Dose On Id14-2 Beamline At Esrf
pdb|3PTL|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Nonapeptide,
Lys-Gly-Glu-Ala-Asp-Ala-Leu-Ser-Leu-Asp At 1.3 A
Resolution.
pdb|4DJ5|X Chain X, Proteinase K By Langmuir-Blodgett Hanging Drop Method At
1.8a Resolution For Unique Water Distribution
Length = 279
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 16 FRSARDSDGHGTHTASTIAG---AVVENVSLFGM 46
+ S+RD +GHGTH A T+ V + LFG+
Sbjct: 60 YYSSRDGNGHGTHCAGTVGSRTYGVAKKTQLFGV 93
>pdb|1IC6|A Chain A, Structure Of A Serine Protease Proteinase K From
Tritirachium Album Limber At 0.98 A Resolution
pdb|1P7V|A Chain A, Structure Of A Complex Formed Between Proteinase K And A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ala- Ala At Atomic Resolution
pdb|1P7W|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Designed Heptapeptide Inhibitor
Pro-Ala-Pro-Phe-Ala-Ser-Ala At Atomic Resolution
pdb|2HD4|A Chain A, Crystal Structure Of Proteinase K Inhibited By A
Lactoferrin Octapeptide Gly-Asp-Glu-Gln-Gly-Glu-Asn-Lys
At 2.15 A Resolution
pdb|2DQK|A Chain A, Crystal Structure Of The Complex Of Proteinase K With A
Specific Lactoferrin Peptide Val-Leu-Leu-His At 1.93 A
Resolution
pdb|2HPZ|A Chain A, Crystal Structure Of Proteinase K Complex With A
Synthetic Peptide Klkllvvirlk At 1.69 A Resolution
pdb|2DUJ|A Chain A, Crystal Structure Of The Complex Formed Between
Proteinase K And A Synthetic Peptide
Leu-Leu-Phe-Asn-Asp At 1.67 A Resolution
pdb|2ID8|A Chain A, Crystal Structure Of Proteinase K
pdb|2G4V|A Chain A, Anomalous Substructure Of Proteinase K
pdb|2PQ2|A Chain A, Structure Of Serine Proteinase K Complex With A Highly
Flexible Hydrophobic Peptide At 1.8a Resolution
pdb|2PWA|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Alanine Boronic Acid At 0.83a Resolution
pdb|2PWB|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Coumarin At 1.9 A Resolution
pdb|2PYZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With
Auramine At 1.8a Resolution
pdb|2V8B|A Chain A, Sad Structure Solution Of Proteinase K Grown In Selenate
Solution
pdb|3DYB|A Chain A, Proteinase K- Digalacturonic Acid Complex
pdb|3GT3|A Chain A, Structure Of Proteinase K With The Mad Triangle B3c
pdb|3GT4|A Chain A, Structure Of Proteinase K With The Magic Triangle I3c
pdb|3OSZ|A Chain A, Crystal Structure Of The Complex Of Proteinase K With An
Antimicrobial Nonapeptide, At 2.26 A Resolution
pdb|3L1K|A Chain A, Sad Structure Solution Of Proteinase K Grown In
Potassium Tellurate Solution
pdb|3AJ8|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
H2o Solution Using Peg 8000
pdb|3AJ9|A Chain A, X-Ray Analysis Of Crystal Of Proteinase K Obtained From
D2o Solution Using Peg 8000
pdb|3Q40|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution.
pdb|3Q5G|A Chain A, Sulphur Sad Structure Solution Of Proteinase K Grown In
So4 Solution
pdb|3QMP|A Chain A, Selenium Sad Structure Solution Of Proteinase K Grown In
So4-Less Solution And Soaked In Selenate.
pdb|4B5L|A Chain A, The 1.6 A High Energy Room Temperature Structure Of
Proteinase K At 38.4 Kev And 0.04 Mgy
pdb|4FON|A Chain A, High Energy Remote Sad Structure Solution Of Proteinase
K From The 37.8 Kev Tellurium K Edge
Length = 279
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 16 FRSARDSDGHGTHTASTIAG---AVVENVSLFGM 46
+ S+RD +GHGTH A T+ V + LFG+
Sbjct: 60 YYSSRDGNGHGTHCAGTVGSRTYGVAKKTQLFGV 93
>pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin
Length = 398
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 67/168 (39%), Gaps = 22/168 (13%)
Query: 7 SLESINSISFRSARDSDGHGTHTASTIAGAVVENVSLFGMARGT---------ARGGAPS 57
+L S R D +GHGTH TIA A+ ++ + G+A G ARG
Sbjct: 135 TLRGKVSTKLRDCADQNGHGTHVIGTIA-ALNNDIGVVGVAPGVQIYSVRVLDARGSGSY 193
Query: 58 ARLAIYKACWF----NLCYXXXXXXXXXXXXXXVVDILSLSFGPSPPQPIYFEDSTSIGT 113
+ +AI + +++S+S G P Y D
Sbjct: 194 SDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLG-GPADDSYLYDM----I 248
Query: 114 FHAFQKGILVSASAGNSIFPGTATNVA-PGILTVAA--SSVDRKSYSN 158
A+ GI++ A++GN P + A P ++ V A S+ + S+SN
Sbjct: 249 IQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSN 296
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 343 YNIISGTSMSCPHVSAVAAIIKSHH 367
Y + GT+M+ PHVS V A+I++ +
Sbjct: 317 YETLMGTAMATPHVSGVVALIQAAY 341
>pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
pdb|2ZWP|B Chain B, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a
Length = 398
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 67/168 (39%), Gaps = 22/168 (13%)
Query: 7 SLESINSISFRSARDSDGHGTHTASTIAGAVVENVSLFGMARGT---------ARGGAPS 57
+L S R D +GHGTH TIA A+ ++ + G+A G ARG
Sbjct: 135 TLRGKVSTKLRDCADQNGHGTHVIGTIA-ALNNDIGVVGVAPGVQIYSVRVLDARGSGSY 193
Query: 58 ARLAIYKACWF----NLCYXXXXXXXXXXXXXXVVDILSLSFGPSPPQPIYFEDSTSIGT 113
+ +AI + +++S+S G P Y D
Sbjct: 194 SDIAIGIEQAILGPDGVADKDGDGIIAGDPDADAAEVISMSLG-GPADDSYLYDM----I 248
Query: 114 FHAFQKGILVSASAGNSIFPGTATNVA-PGILTVAA--SSVDRKSYSN 158
A+ GI++ A++GN P + A P ++ V A S+ + S+SN
Sbjct: 249 IQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSN 296
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 343 YNIISGTSMSCPHVSAVAAIIKSHH 367
Y + GT+M+ PHVS V A+I++ +
Sbjct: 317 YETLMGTAMATPHVSGVVALIQAAY 341
>pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|B Chain B, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
pdb|2ZWO|C Chain C, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a
Length = 398
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 67/168 (39%), Gaps = 22/168 (13%)
Query: 7 SLESINSISFRSARDSDGHGTHTASTIAGAVVENVSLFGMARGT---------ARGGAPS 57
+L S R D +GHGTH TIA A+ ++ + G+A G ARG
Sbjct: 135 TLRGKVSTKLRDCADQNGHGTHVIGTIA-ALNNDIGVVGVAPGVQIYSVRVLDARGSGSY 193
Query: 58 ARLAIYKACWF----NLCYXXXXXXXXXXXXXXVVDILSLSFGPSPPQPIYFEDSTSIGT 113
+ +AI + +++S+S G P Y D
Sbjct: 194 SDIAIGIEQAILGPDGVADKDGDGIIAGDPDDAAAEVISMSLG-GPADDSYLYDM----I 248
Query: 114 FHAFQKGILVSASAGNSIFPGTATNVA-PGILTVAA--SSVDRKSYSN 158
A+ GI++ A++GN P + A P ++ V A S+ + S+SN
Sbjct: 249 IQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSN 296
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 343 YNIISGTSMSCPHVSAVAAIIKSHH 367
Y + GT+M+ PHVS V A+I++ +
Sbjct: 317 YETLMGTAMATPHVSGVVALIQAAY 341
>pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin
Soaked By 10mm Cacl2
Length = 395
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 67/168 (39%), Gaps = 22/168 (13%)
Query: 7 SLESINSISFRSARDSDGHGTHTASTIAGAVVENVSLFGMARGT---------ARGGAPS 57
+L S R D +GHGTH TIA A+ ++ + G+A G ARG
Sbjct: 132 TLRGKVSTKLRDCADQNGHGTHVIGTIA-ALNNDIGVVGVAPGVQIYSVRVLDARGSGSY 190
Query: 58 ARLAIYKACWF----NLCYXXXXXXXXXXXXXXVVDILSLSFGPSPPQPIYFEDSTSIGT 113
+ +AI + +++S+S G P Y D
Sbjct: 191 SDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLG-GPADDSYLYDM----I 245
Query: 114 FHAFQKGILVSASAGNSIFPGTATNVA-PGILTVAA--SSVDRKSYSN 158
A+ GI++ A++GN P + A P ++ V A S+ + S+SN
Sbjct: 246 IQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSN 293
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 343 YNIISGTSMSCPHVSAVAAIIKSHH 367
Y + GT+M+ PHVS V A+I++ +
Sbjct: 314 YETLMGTAMATPHVSGVVALIQAAY 338
>pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of
Pro-Sa-Subtilisin
Length = 398
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 67/168 (39%), Gaps = 22/168 (13%)
Query: 7 SLESINSISFRSARDSDGHGTHTASTIAGAVVENVSLFGMARGT---------ARGGAPS 57
+L S R D +GHGTH TIA A+ ++ + G+A G ARG
Sbjct: 135 TLRGKVSTKLRDCADQNGHGTHVIGTIA-ALNNDIGVVGVAPGVQIYSVRVLDARGSGSY 193
Query: 58 ARLAIYKACWF----NLCYXXXXXXXXXXXXXXVVDILSLSFGPSPPQPIYFEDSTSIGT 113
+ +AI + +++S+S G P Y D
Sbjct: 194 SDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLG-GPADDSYLYDM----I 248
Query: 114 FHAFQKGILVSASAGNSIFPGTATNVA-PGILTVAA--SSVDRKSYSN 158
A+ GI++ A++GN P + A P ++ V A S+ + S+SN
Sbjct: 249 IQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSN 296
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 343 YNIISGTSMSCPHVSAVAAIIKSHH 367
Y + GT+M+ PHVS V A+I++ +
Sbjct: 317 YETLMGTAMATPHVSGVVALIQAAY 341
>pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between
Mat-Tk-Subtilisin And Tk- Propeptide
Length = 320
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 22/162 (13%)
Query: 13 SISFRSARDSDGHGTHTASTIAGAVVENVSLFGMARGT---------ARGGAPSARLAIY 63
S R D +GHGTH TIA A+ ++ + G+A G ARG + +AI
Sbjct: 63 STKLRDCADQNGHGTHVIGTIA-ALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIG 121
Query: 64 KACWF----NLCYXXXXXXXXXXXXXXVVDILSLSFGPSPPQPIYFEDSTSIGTFHAFQK 119
+ +++S+S G P Y D A+
Sbjct: 122 IEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLG-GPADDSYLYDM----IIQAYNA 176
Query: 120 GILVSASAGNSIFPGTATNVA-PGILTVAA--SSVDRKSYSN 158
GI++ A++GN P + A P ++ V A S+ + S+SN
Sbjct: 177 GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSN 218
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 343 YNIISGTSMSCPHVSAVAAIIKSHH 367
Y + GT+M+ PHVS V A+I++ +
Sbjct: 239 YETLMGTAMATPHVSGVVALIQAAY 263
>pdb|2Z56|A Chain A, Crystal Structure Of G56s-Propeptide:s324a-Subtilisin
Complex
pdb|2Z57|A Chain A, Crystal Structure Of G56e-Propeptide:s324a-Subtilisin
Complex
pdb|2Z58|A Chain A, Crystal Structure Of G56w-Propeptide:s324a-Subtilisin
Complex
Length = 318
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 22/162 (13%)
Query: 13 SISFRSARDSDGHGTHTASTIAGAVVENVSLFGMARGT---------ARGGAPSARLAIY 63
S R D +GHGTH TIA A+ ++ + G+A G ARG + +AI
Sbjct: 61 STKLRDCADQNGHGTHVIGTIA-ALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIG 119
Query: 64 KACWF----NLCYXXXXXXXXXXXXXXVVDILSLSFGPSPPQPIYFEDSTSIGTFHAFQK 119
+ +++S+S G P Y D A+
Sbjct: 120 IEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLG-GPADDSYLYDM----IIQAYNA 174
Query: 120 GILVSASAGNSIFPGTATNVA-PGILTVAA--SSVDRKSYSN 158
GI++ A++GN P + A P ++ V A S+ + S+SN
Sbjct: 175 GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSN 216
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 343 YNIISGTSMSCPHVSAVAAIIKSHH 367
Y + GT+M+ PHVS V A+I++ +
Sbjct: 237 YETLMGTAMATPHVSGVVALIQAAY 261
>pdb|2ZRQ|A Chain A, Crystal Structure Of S324a-Subtilisin
pdb|3A3N|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Two C-Terminal Residues
pdb|3A3O|A Chain A, Crystal Structure Of Complex Between Sa-Subtilisin And Tk-
Propeptide With Deletion Of The Five C-Terminal Residues
Length = 329
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 22/162 (13%)
Query: 13 SISFRSARDSDGHGTHTASTIAGAVVENVSLFGMARGT---------ARGGAPSARLAIY 63
S R D +GHGTH TIA A+ ++ + G+A G ARG + +AI
Sbjct: 72 STKLRDCADQNGHGTHVIGTIA-ALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIG 130
Query: 64 KACWF----NLCYXXXXXXXXXXXXXXVVDILSLSFGPSPPQPIYFEDSTSIGTFHAFQK 119
+ +++S+S G P Y D A+
Sbjct: 131 IEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLG-GPADDSYLYDM----IIQAYNA 185
Query: 120 GILVSASAGNSIFPGTATNVA-PGILTVAA--SSVDRKSYSN 158
GI++ A++GN P + A P ++ V A S+ + S+SN
Sbjct: 186 GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSN 227
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 343 YNIISGTSMSCPHVSAVAAIIKSHH 367
Y + GT+M+ PHVS V A+I++ +
Sbjct: 248 YETLMGTAMATPHVSGVVALIQAAY 272
>pdb|2Z2X|A Chain A, Crystal Structure Of Mature Form Of Tk-Subtilisin
Length = 318
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 22/162 (13%)
Query: 13 SISFRSARDSDGHGTHTASTIAGAVVENVSLFGMARGT---------ARGGAPSARLAIY 63
S R D +GHGTH TIA A+ ++ + G+A G ARG + +AI
Sbjct: 61 STKLRDCADQNGHGTHVIGTIA-ALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIG 119
Query: 64 KACWF----NLCYXXXXXXXXXXXXXXVVDILSLSFGPSPPQPIYFEDSTSIGTFHAFQK 119
+ +++S+S G P Y D A+
Sbjct: 120 IEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLG-GPADDSYLYDM----IIQAYNA 174
Query: 120 GILVSASAGNSIFPGTATNVA-PGILTVAA--SSVDRKSYSN 158
GI++ A++GN P + A P ++ V A S+ + S+SN
Sbjct: 175 GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSN 216
>pdb|2Z2Y|A Chain A, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
pdb|2Z2Y|C Chain C, Crystal Structure Of Autoprocessed Form Of Tk-Subtilisin
Length = 318
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 22/162 (13%)
Query: 13 SISFRSARDSDGHGTHTASTIAGAVVENVSLFGMARGT---------ARGGAPSARLAIY 63
S R D +GHGTH TIA A+ ++ + G+A G ARG + +AI
Sbjct: 61 STKLRDCADQNGHGTHVIGTIA-ALNNDIGVVGVAPGVQIYSVRVLDARGSGSYSDIAIG 119
Query: 64 KACWF----NLCYXXXXXXXXXXXXXXVVDILSLSFGPSPPQPIYFEDSTSIGTFHAFQK 119
+ +++S+S G P Y D A+
Sbjct: 120 IEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLG-GPADDSYLYDM----IIQAYNA 174
Query: 120 GILVSASAGNSIFPGTATNVA-PGILTVAA--SSVDRKSYSN 158
GI++ A++GN P + A P ++ V A S+ + S+SN
Sbjct: 175 GIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSNDNIASFSN 216
>pdb|1TEC|E Chain E, Crystallographic Refinement By Incorporation Of Molecular
Dynamics. The Thermostable Serine Protease Thermitase
Complexed With Eglin-C
pdb|2TEC|E Chain E, Molecular Dynamics Refinement Of A Thermitase-Eglin-C
Complex At 1.98 Angstroms Resolution And Comparison Of
Two Crystal Forms That Differ In Calcium Content
pdb|3TEC|E Chain E, Calcium Binding To Thermitase. Crystallographic Studies Of
Thermitase At 0, 5 And 100 Mm Calcium
Length = 279
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 343 YNIISGTSMSCPHVSAVAAIIKSH 366
Y +SGTSM+ PHV+ VA ++ S
Sbjct: 218 YASLSGTSMATPHVAGVAGLLASQ 241
>pdb|1THM|A Chain A, Crystal Structure Of Thermitase At 1.4 Angstroms
Resolution
Length = 279
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 343 YNIISGTSMSCPHVSAVAAIIKSH 366
Y +SGTSM+ PHV+ VA ++ S
Sbjct: 218 YASLSGTSMATPHVAGVAGLLASQ 241
>pdb|2X8J|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 325 DIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAII 363
DI+ V I++T S Y +SGT+M+ PHV+ A+I
Sbjct: 226 DIVAPGVGIKSTYLDS-GYAELSGTAMAAPHVAGALALI 263
>pdb|2Q18|X Chain X, 2-Keto-3-Deoxy-D-Arabinonate Dehydratase
pdb|2Q19|X Chain X, 2-keto-3-deoxy-d-arabinonate Dehydratase Apo Form
pdb|2Q1A|X Chain X, 2-Keto-3-Deoxy-D-Arabinonate Dehydratase Complexed With
Magnesium And 2-Oxobutyrate
pdb|2Q1C|X Chain X, 2-Keto-3-Deoxy-D-Arabinonate Dehydratase Complexed With
Calcium And 2- Oxobutyrate
pdb|2Q1D|X Chain X, 2-Keto-3-Deoxy-D-Arabinonate Dehydratase Complexed With
Magnesium And 2,5-Dioxopentanoate
pdb|3BQB|A Chain A, Hexagonal Kristal Form Of 2-Keto-3-Deoxyarabinonate
Dehydratase
pdb|3BQB|X Chain X, Hexagonal Kristal Form Of 2-Keto-3-Deoxyarabinonate
Dehydratase
pdb|3BQB|Z Chain Z, Hexagonal Kristal Form Of 2-Keto-3-Deoxyarabinonate
Dehydratase
pdb|3BQB|Y Chain Y, Hexagonal Kristal Form Of 2-Keto-3-Deoxyarabinonate
Dehydratase
Length = 293
Score = 28.9 bits (63), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 21/83 (25%)
Query: 254 ILIDPNAKDIGFQFVIPATLIGQEEAQELQAYMTAGKNPIARIYPPQTILKTKPAPEMAA 313
+++D N K +G+ T++ A++L+A +NP+ Y PQ+ + A
Sbjct: 148 VVLDSNGKILGY------TIMDDVSARDLEA-----ENPL---YLPQSKI-------YAG 186
Query: 314 FSSMGPNIITADIIRSPVAIEAT 336
+ GP I+T+D I++P +++ T
Sbjct: 187 CCAFGPVIVTSDEIKNPYSLDIT 209
>pdb|2X8J|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2X8J|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 327
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 325 DIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAII 363
DI+ V I++T S Y +SGT+M+ PHV+ A+I
Sbjct: 226 DIVAPGVGIKSTYLDS-GYAELSGTAMAAPHVAGALALI 263
>pdb|2WV7|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WV7|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|A Chain A, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|B Chain B, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|C Chain C, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|D Chain D, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|E Chain E, Intracellular Subtilisin Precursor From B. Clausii
pdb|2WWT|F Chain F, Intracellular Subtilisin Precursor From B. Clausii
Length = 329
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 325 DIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAII 363
DI+ V I++T S Y +SGT+M+ PHV+ A+I
Sbjct: 226 DIVAPGVGIKSTYLDS-GYAELSGTAMAAPHVAGALALI 263
>pdb|2XRM|A Chain A, Processed Intracellular Subtilisin From B. Clausii
Length = 311
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 325 DIIRSPVAIEATAEQSVDYNIISGTSMSCPHVSAVAAII 363
DI+ V I++T S Y +SGT+M+ PHV+ A+I
Sbjct: 208 DIVAPGVGIKSTYLDS-GYAELSGTAMAAPHVAGALALI 245
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,215,057
Number of Sequences: 62578
Number of extensions: 641373
Number of successful extensions: 1606
Number of sequences better than 100.0: 90
Number of HSP's better than 100.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1407
Number of HSP's gapped (non-prelim): 202
length of query: 564
length of database: 14,973,337
effective HSP length: 104
effective length of query: 460
effective length of database: 8,465,225
effective search space: 3894003500
effective search space used: 3894003500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)